BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011463
         (485 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/470 (77%), Positives = 418/470 (88%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           MG KT+ KWS +I SAQV QLI+AE+D+ KA+VIFDSATAEY NGFRH + TFSLMIS+L
Sbjct: 1   MGSKTVIKWSKQIGSAQVAQLIKAERDIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRL 60

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           VSAN FR AE+LL R+ +EKC+ITEDIFLSICR YGRVH+PLDA+RVF KMKE+ CEP+ 
Sbjct: 61  VSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQ 120

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           KSYITV AILV ENQLKLA RFYR+MRE+GI P VASLNVLIKALCKNSGTMDAA +IFR
Sbjct: 121 KSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFR 180

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           EMPNRGC PDSYTYGTLINGLCRLGKI EAKELFKEMETKACSPTVVTYTSLI+GLCQSK
Sbjct: 181 EMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSK 240

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
            ++ A+RL EEM SKG++PNVFTYSSLMDG CK GCSS+A+ELL MM+S+RH PN++TYS
Sbjct: 241 DLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYS 300

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL++GLCKEGKLQEAVEILDRMKLQGL+PDAGLYGKIIS FCDI K+ EAANFLDEMVLG
Sbjct: 301 TLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLG 360

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           GI+PNRLTWSLH+RIHN VVQGLC   PNRAFQ+YLSMR R IS+D+ T+ SL+  FC K
Sbjct: 361 GISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNK 420

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           GD+HK+A +VDE+VLDGC+PDE TW+AV+ A WDRRK+R++AEL+ +ELM
Sbjct: 421 GDLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELVQVELM 470


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/477 (75%), Positives = 417/477 (87%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           MG KT+ KWS +I SAQV QLI+AE+D+ KA+VIFDSATAEY NGFRH + TFSLMIS+L
Sbjct: 1   MGSKTVIKWSKQIGSAQVAQLIKAERDIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRL 60

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           VSAN FR AE+LL R+ +EKC+ITEDIFLSICR YGRVH+PLDA+RVF KMKE+ CEP+ 
Sbjct: 61  VSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQ 120

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           KSYITV AILV ENQLKLA RFYR+MRE+GI P VASLNVLIKALCKNSGTMDAA +IFR
Sbjct: 121 KSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFR 180

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           EMPNRGC P SYTYGTLI GLCRLGKI EAKELFKEMETKACSPTVVTY SLI+GLCQSK
Sbjct: 181 EMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSK 240

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
            ++ A+RL EEM SKG++PNVFTYSSLMDG CK GCSS+A+ELL MM+S+RH PN++TYS
Sbjct: 241 DLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYS 300

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL++GLCKEGKLQEAVEILDRMKLQGL+PDAGLYGKIIS FCDI K+ EAANFLDEMVLG
Sbjct: 301 TLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLG 360

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           GI+PNRLTWSLH+RIHN VVQGLC   PNRAFQ+YLSMR R IS+D+ T+ SL+  FC K
Sbjct: 361 GISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNK 420

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           GD+HK+A +VDE+VLDGC+PDE TW+AV+ A WDRRK+R++AEL+ +ELM   +  E
Sbjct: 421 GDLHKAAHLVDEMVLDGCIPDEXTWNAVVCAFWDRRKVRESAELVQVELMGTFLNLE 477


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/476 (70%), Positives = 418/476 (87%), Gaps = 1/476 (0%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           MG+KT+ KWS +IT ++V QL+RAE+D+ KA +IFDSA+AEY+NGFRHD++TF +MISKL
Sbjct: 1   MGMKTLLKWSKQITPSKVEQLLRAERDLRKAKIIFDSASAEYSNGFRHDHTTFGVMISKL 60

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           VSAN+FRPAE++L+R+ +EKC ITE+IFLSICRGYGRVH PLDA+RVF KM +FGC+PT 
Sbjct: 61  VSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTD 120

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           KSYI+V AILVEENQLK+A  FY++MRE+G++  V SLNVLIKALCKNSGT+DAAF+IFR
Sbjct: 121 KSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFR 180

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           EMP RGC PDSYTYGTLINGLC+LGK +EAKELFKEM+TK CSP+VVTY+ L++GLCQ+ 
Sbjct: 181 EMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAG 240

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
           +V+EAM LF++M+ K +EPNVFTYSSLMDGLCK G S +AMELL+MM+ KRH+PN+VTYS
Sbjct: 241 NVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYS 300

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL+NGLCKEGKL EAVE LDRMKLQGLKPDAGLYGKII+ FC+I K+QEAA +LDEMVLG
Sbjct: 301 TLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLG 360

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            I+PNR+TWSLH++++N VVQGLC   + NR+FQ+Y+ MR R IS+D+ T+ SL+ CFCK
Sbjct: 361 QISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCK 420

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
           KGD+HK+ARI DE+VLDGC+PD G WSAV+   WDRRK+R+A E +++ELMN+ VE
Sbjct: 421 KGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVREAFESIVVELMNEFVE 476


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/478 (69%), Positives = 401/478 (83%), Gaps = 1/478 (0%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           MG KT+FKW  +IT++ V+QLI+AEKDV+KA+ +FDSATAEY NGFRHD+ TF L+IS+L
Sbjct: 1   MGSKTLFKWPKQITNSLVVQLIKAEKDVHKAVNMFDSATAEYGNGFRHDHETFGLIISRL 60

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           V+ NQFRPAE +L+R+ +EKC +TEDIFLSICRGYGRVHRPLDA+RVF KM+ F   PT 
Sbjct: 61  VTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIRVFHKMEGFQLRPTQ 120

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           K+Y+T+L ILVEEN +K A  FYR MRE+GI   V SLN+LIKALCKN  T+D+A +IF+
Sbjct: 121 KAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQ 180

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           EMPNRGC PDSYTYGTLINGLCRLG I EAKELFKEME K  S +VVTYTSLI+GLCQS 
Sbjct: 181 EMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSN 240

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
           +++EA+ L EEM+   +EPNVFTYSSLMDGLCKGG SSQAM+LL++M  K H PN+VTYS
Sbjct: 241 NLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYS 300

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL+NGLCKE KL+EAVEILDRM++QGLKP+AGLYGKIIS  C  G YQEAANF+DEMVLG
Sbjct: 301 TLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLG 360

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           GI+PNR +WSLH+R+HN VVQGLC   DP RAFQ+YLSMR R ISV+  T+  L+ CFCK
Sbjct: 361 GISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCK 420

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           +GD+HK+ARI++E+VLDGC+PDEG W+ V+  LWDR+K+R+A E LL+EL  K VEAE
Sbjct: 421 RGDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWDRKKVREATEQLLVELQQKFVEAE 478


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/478 (66%), Positives = 396/478 (82%), Gaps = 1/478 (0%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           M  KT+FKW  +IT++ V QLI+AEKD+NK LV+FDSAT EY+NGFRHD++TF  MI +L
Sbjct: 1   MASKTLFKWPKQITNSLVEQLIKAEKDINKTLVMFDSATEEYSNGFRHDHNTFGAMIHRL 60

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           VS NQFRPAE +L+R+ +E C++TED+FL+ICRGYGRVHRPLDA+RVF KM++F  +PT 
Sbjct: 61  VSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQ 120

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           KSY+TV  ILVEEN +K A  FY+ MRE GI P V SLN+LIKALCKN  T+++AF++FR
Sbjct: 121 KSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFR 180

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           EMPNRGC PDSYTYGTLINGLC+LGKI +AKEL  EME K  SP+VV+YTSLI+GLCQS 
Sbjct: 181 EMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSN 240

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
           +++EA+ L EEM   G+EPNVFTYSSLMDGLCK G SSQAMELL++M+ +R  PN+VTYS
Sbjct: 241 NLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYS 300

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL+NGLCKEGK +EAVEILDRM+LQGLKPDAG+YG+IIS  C    YQEAANF+DEM LG
Sbjct: 301 TLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALG 360

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           GI+PNR +W+ H+++HN VVQGLC   DP RAFQ+YLSMR R ISV+  T+  L+ CFCK
Sbjct: 361 GISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCK 420

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           +GD++K+ARI++E++LDGC+PDEG W+ +M  LWDR+K+R+  ELL+ EL  K VEAE
Sbjct: 421 RGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELLVAELKQKFVEAE 478


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/472 (66%), Positives = 383/472 (81%), Gaps = 1/472 (0%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           MG K MFKW+  +T   V QLI+AE+D+ KAL+IFDSATAEYANGF+HD +TFSLMISKL
Sbjct: 30  MGSKAMFKWAKTVTPTHVQQLIQAERDIKKALIIFDSATAEYANGFKHDLNTFSLMISKL 89

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           +SANQFR AE LLDR+ +EK D+TEDI LSICR YGR+H+PLD++RVF KM++F C+PT 
Sbjct: 90  ISANQFRLAETLLDRMKEEKIDVTEDILLSICRAYGRIHKPLDSIRVFHKMQDFHCKPTE 149

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           KSYI+VLAILVEENQLK AFRFYR MR++GI P V SLNVLIKA CKNSGTMD A  +FR
Sbjct: 150 KSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFR 209

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
            M N GC PDSYTYGTLINGLCR   I EAKEL +EMETK CSP+VVTYTS+I+GLCQ  
Sbjct: 210 TMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLN 269

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
           +V+EAMRL E+M+ K +EPNVFTYSSLMDG CK G SS+A ++L++MI KR RPN+++YS
Sbjct: 270 NVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYS 329

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TLLNGLC EGK+ EA+EI DRMKLQG KPDAGLYGKI++C CD+ ++QEAANFLDEMVL 
Sbjct: 330 TLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLC 389

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           GI PNR+TWSLH+R HN V+ GLC   + NRAFQ+YLS+  R IS+   T++SL+ CFC 
Sbjct: 390 GIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCN 449

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           K D+ K++RI+DE+V++GC+P    WS ++    D RK   A +LL L+LM+
Sbjct: 450 KKDLPKTSRILDEMVINGCIPQGEMWSTMVNCFCDERKACDAMKLLQLQLMD 501


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/470 (65%), Positives = 386/470 (82%), Gaps = 1/470 (0%)

Query: 1   MGVKTM-FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISK 59
           MG K M FKWS  IT +QV++L+RAEKDV K++ +FDSATAEYANG+ HD S+F  M+ +
Sbjct: 1   MGSKVMMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLR 60

Query: 60  LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
           LVSAN+F+ AEDL+ R+  E C ++EDI LSICRGYGRVHRP D++RVF KMK+F C+P+
Sbjct: 61  LVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPS 120

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
            K+Y+TVLAILVEENQL LAF+FY++MREIG+ P VASLNVLIKALC+N GT+DA  KIF
Sbjct: 121 QKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF 180

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
            EMP RGC PDSYTYGTLI+GLCR G+I EAK+LF EM  K C+PTVVTYTSLINGLC S
Sbjct: 181 LEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGS 240

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
           K+V+EAMR  EEM+SKG+EPNVFTYSSLMDGLCK G S QAMEL +MM+++  RPN+VTY
Sbjct: 241 KNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTY 300

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           +TL+ GLCKE K+QEAVE+LDRM LQGLKPDAGLYGK+IS FC I K++EAANFLDEM+L
Sbjct: 301 TTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMIL 360

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           GGITPNRLTW++H++  N VV+GLC   P+RAF +YLSMR+R ISV+  T  SL+ C CK
Sbjct: 361 GGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCK 420

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           KG+  K+ ++VDE+V DGC+P +GTW  ++    D+  + +A++ LL +L
Sbjct: 421 KGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEASDTLLRDL 470



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 118/290 (40%), Gaps = 44/290 (15%)

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G   D  ++G ++  L    K   A++L   M+ + C  +     S+  G  +     ++
Sbjct: 46  GYVHDQSSFGYMVLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDS 105

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           +R+F +M+    +P+   Y +++  L +    + A +  + M      P + + + L+  
Sbjct: 106 LRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKA 165

Query: 306 LCK-EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           LC+ +G +   ++I   M  +G  PD+  YG                             
Sbjct: 166 LCRNDGTVDAGLKIFLEMPKRGCDPDSYTYG----------------------------- 196

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                        T++ GLC+    + A +++  M  +  +   +TY+SLI   C   ++
Sbjct: 197 -------------TLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNV 243

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            ++ R ++E+   G  P+  T+S++M  L    +  QA EL  + +   C
Sbjct: 244 DEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGC 293


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/470 (65%), Positives = 386/470 (82%), Gaps = 1/470 (0%)

Query: 1   MGVKTM-FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISK 59
           MG K M FKWS  IT +QV++L+RAEKDV K++ +FDSATAEYANG+ HD S+F  M+S+
Sbjct: 1   MGSKMMMFKWSKNITPSQVIKLMRAEKDVEKSIAVFDSATAEYANGYLHDQSSFGYMVSR 60

Query: 60  LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
           LVSAN+F+ AED++ R+  E C ++EDI LSICRGYGRVHRP D++RVF KMK+F C+P+
Sbjct: 61  LVSANKFKAAEDIVARMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPS 120

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
            K+Y+TVLAILVEENQL LAF+FY++MREIG+ P VASLNVLIKALC+N GT+DA  KIF
Sbjct: 121 QKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF 180

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
            EMP RGC PDSYTYGTLI+GLCR G+I EAK+LF EM  K C+PTVVTYTSLINGLC S
Sbjct: 181 HEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGS 240

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
           K+V+EAMR  EEM+ KG+EPNVFTYSSLMDGLCK G S QAMEL +MM+++  RPN+VTY
Sbjct: 241 KNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTY 300

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           +TL+ GLCKE K+QEAVE+LDRM LQGLKPDAGLYGK+IS FC + K++EAANFLDEM+L
Sbjct: 301 TTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMIL 360

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           GGITPNRLTW++H++  N VV+GLC   P+RAF +YLSMR+R ISV+  T  SL+ C CK
Sbjct: 361 GGITPNRLTWNIHVKTSNEVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLDSLVKCLCK 420

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           KG+  K+ ++VDE+V DGC+P++GTW  ++    D   + +A++ LL +L
Sbjct: 421 KGEFQKAVQLVDEIVTDGCIPNKGTWKLLIGHTLDNTIVGEASDSLLRDL 470



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 119/290 (41%), Gaps = 44/290 (15%)

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G   D  ++G +++ L    K   A+++   M+ + C  +     S+  G  +     ++
Sbjct: 46  GYLHDQSSFGYMVSRLVSANKFKAAEDIVARMKIENCVVSEDILLSICRGYGRVHRPFDS 105

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           +R+F +M+    +P+   Y +++  L +    + A +  + M      P + + + L+  
Sbjct: 106 LRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKA 165

Query: 306 LCK-EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           LC+ +G +   ++I   M  +G  PD+  YG                             
Sbjct: 166 LCRNDGTVDAGLKIFHEMPKRGCDPDSYTYG----------------------------- 196

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                        T++ GLC+    + A +++  M  +  +   +TY+SLI   C   ++
Sbjct: 197 -------------TLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNV 243

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            ++ R V+E+   G  P+  T+S++M  L    +  QA EL  + +   C
Sbjct: 244 DEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGC 293


>gi|357135887|ref|XP_003569539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Brachypodium distachyon]
          Length = 476

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/466 (43%), Positives = 295/466 (63%), Gaps = 12/466 (2%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANG-FRHDNSTFSLMISKLVSA 63
           T  KW   +T+  + +L+RAE+D  +AL +FD+ATA   +        T SL+ S+L SA
Sbjct: 7   TPAKWPKTLTAGHLHRLVRAERDPRRALALFDAATAASVSAPILPSPDTVSLLTSRLASA 66

Query: 64  NQFRPAEDLLDRVN---KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEP-T 119
                A  LL R         D+ E  FL++ R + R HRPL A+++F         P +
Sbjct: 67  GLLPLATSLLSRSRALFPSAADL-EPPFLTLLRAFSRTHRPLAALQLFRSAPSALALPHS 125

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN-SGTMDAAFKI 178
            +SY  VLA LV  + L LA      MR  G  P  A+ NVL+KA C + S  ++ A ++
Sbjct: 126 ARSYTAVLATLVSHSHLPLAHSLLADMRAGGFAPTTATYNVLLKAHCSDASAPIEDAVRL 185

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           FR +P     PD+ +Y T+I+GLCR  +  +A+E+F EM     +PTVVTYT++IN L +
Sbjct: 186 FRNIPK----PDACSYNTVIDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTTVINWLAR 241

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
              +++A+++F+EM   G+ PNV TYSSL+DGLCKGG ++ A+ELL  M  +   PN +T
Sbjct: 242 DGCLDDALKMFDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALELLDRMAKEAKLPNTIT 301

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           YS+++NGLCKE +L EA+E+LDRM+LQG KPDAGL+GK+I   C  G+  EAAN+LDEMV
Sbjct: 302 YSSVINGLCKEDRLNEAMEVLDRMRLQGRKPDAGLFGKLIVGLCGAGRAVEAANYLDEMV 361

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
           L G+ PNR+TWSLH+RI++ VV  LC K +  R F+VY SMR R IS +  T+  L+  F
Sbjct: 362 LSGVEPNRVTWSLHVRINDAVVTALCAKGEAGRTFRVYQSMRTRGISTEPGTFHLLVEFF 421

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            KK D+ K+A +V +++ + C+P+  TW  ++T  W ++K+RQ AE
Sbjct: 422 SKKNDLEKAAHVVLDMLSEKCIPERETWDIILTRYWSKKKVRQEAE 467


>gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 500

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/470 (43%), Positives = 295/470 (62%), Gaps = 16/470 (3%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATA-----EYANGFRHDNSTFSLMISK 59
           T  KW   +T+  + +L+R E+D  +AL +FD+ATA                T SL+ S+
Sbjct: 27  TPTKWPKNLTAEHLHRLVRGERDPRRALALFDAATAAPVSTSVPTQILPSPDTVSLLTSR 86

Query: 60  LVSANQFRPAEDLLDRVN---KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116
           L SA     A  LL R         D+ E  FL++ R + R HRPLDA+++F        
Sbjct: 87  LASAGLLPLATSLLSRSRALFPSNADL-EPPFLTLLRAFCRTHRPLDALQLFRSAPSALS 145

Query: 117 EP-TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT-MDA 174
            P + +SY  VLA LV  + L LA      MR  G  P  A+ NVL+KA C ++   +D 
Sbjct: 146 LPHSARSYTAVLAGLVAHSHLPLAHSLLADMRASGFGPTTATYNVLLKAHCSDAAAHIDD 205

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A ++FR +P     PD+ +Y TLI+GLCR  +  EA+ELF EM     +PTVVTYT++IN
Sbjct: 206 AVRLFRNIPK----PDACSYNTLIDGLCRRSRRVEAQELFSEMVENGIAPTVVTYTTIIN 261

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
            L +   +++A+ +F+EM  +G+ PNV TYSSL+DGLCKGG ++ A++LL+ +  +   P
Sbjct: 262 WLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGLCKGGRAASALDLLERLAKEVKLP 321

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N + YS+++NGLCKEG L+EA+E+LDRM+LQG KPDAGL+GK+I   CD G+  EAAN+L
Sbjct: 322 NTIIYSSVINGLCKEGLLREAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYL 381

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
           DEMVL G+ PNR+TWSLH+RI+  VV  LC K +  RAFQVY SMR R IS +  T+  L
Sbjct: 382 DEMVLAGVQPNRVTWSLHVRINVAVVTALCVKGEVGRAFQVYQSMRTRGISTEPSTFHLL 441

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           +  F KK  + K+A +V +++ + C+P+  TW  +++  W ++K+RQ AE
Sbjct: 442 VEFFSKKNHLEKAAHVVLDMLSERCIPERETWDVIVSGYWSKKKVRQEAE 491



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 15/274 (5%)

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSP-TVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
           TL+   CR  +  +A +LF+   +    P +  +YT+++ GL     +  A  L  +MR+
Sbjct: 119 TLLRAFCRTHRPLDALQLFRSAPSALSLPHSARSYTAVLAGLVAHSHLPLAHSLLADMRA 178

Query: 255 KGVEPNVFTYSSLMDGLCKGGCS--SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            G  P   TY+ L+   C    +    A+ L + +     +P+  +Y+TL++GLC+  + 
Sbjct: 179 SGFGPTTATYNVLLKAHCSDAAAHIDDAVRLFRNI----PKPDACSYNTLIDGLCRRSRR 234

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA E+   M   G+ P    Y  II+     G   +A    DEM   GI PN +T+S  
Sbjct: 235 VEAQELFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGIAPNVVTYS-- 292

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV-DSLTYSSLITCFCKKGDIHKSARIVD 431
                +++ GLCK     +    L    + + + +++ YSS+I   CK+G + ++  ++D
Sbjct: 293 -----SLIDGLCKGGRAASALDLLERLAKEVKLPNTIIYSSVINGLCKEGLLREAMEVLD 347

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + L G  PD G +  ++  L D  +  +AA  L
Sbjct: 348 RMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYL 381


>gi|226492629|ref|NP_001143148.1| uncharacterized protein LOC100275629 [Zea mays]
 gi|195615066|gb|ACG29363.1| hypothetical protein [Zea mays]
          Length = 478

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/468 (44%), Positives = 296/468 (63%), Gaps = 14/468 (2%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEY----ANGFRHDNSTFSLMISKL 60
           T  KW   +T+  + +L+RAE+D  +AL IFD ATA       +      +T SL+ S+L
Sbjct: 7   TPPKWPKTLTADHLHRLVRAERDPRRALAIFDGATAAASTSAPDPITPSPATVSLLTSRL 66

Query: 61  VSANQFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVF-DKMKEFGCE 117
            SA     A  LL R       +   E  FL + R + R HRPL A+ +F     +    
Sbjct: 67  ASAGHLPLATSLLSRSRGVFPSVAALEPPFLGLLRAFSRTHRPLAALHLFRSAPSDLALP 126

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT-MDAAF 176
            + +SY  VLA LV  + L LA      MR  G  P  A+ NVL+KA C ++   ++ A 
Sbjct: 127 HSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKAHCSDAAAHIEDAL 186

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           ++FR +P     PD  +Y T+I+GLCR G++ EA ++F EM  K  +PTVVTYT++I+ L
Sbjct: 187 RLFRNIPK----PDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWL 242

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
            +    ++A+++F EM  +GV PN+ TYSSL+DGLCKGG ++ A+ELL  M+ ++  PN 
Sbjct: 243 AREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMVKEKKLPNT 302

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           +TYS++++GLCKE  L EA+E+LDRM+LQG KPDAGL+GK+I   CD G+  EAAN+LDE
Sbjct: 303 ITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDE 362

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
           MVL GI PNR+TWSLH RI+NTV+  LC K +  RAFQVY S R RSIS D  T+  L+ 
Sbjct: 363 MVLAGIEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQSTRTRSISTDPTTFHLLVE 422

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            F  K +I K+AR+V +++ + C+P+  TW A+++  W ++K+RQ A+
Sbjct: 423 SF-SKNNIEKAARVVLDMLSERCIPERETWDAIISGYWSKKKVRQEAK 469



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 149/323 (46%), Gaps = 22/323 (6%)

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD----SYTYGTLINGLCRLGK 206
           I P  A++++L   L  ++G +  A  +     +RG  P        +  L+    R  +
Sbjct: 52  ITPSPATVSLLTSRLA-SAGHLPLATSLLSR--SRGVFPSVAALEPPFLGLLRAFSRTHR 108

Query: 207 IYEAKELFKEMETKACSP-TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
              A  LF+   +    P +  +Y +++  L     +  A  L  +MR+ G  P   TY+
Sbjct: 109 PLAALHLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYN 168

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            L+    K  CS  A  +   +   R+  +P++ +Y+T+++GLC+ G+L EA+++   M 
Sbjct: 169 VLL----KAHCSDAAAHIEDALRLFRNIPKPDVCSYNTIIDGLCRRGRLAEALDMFSEMV 224

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            + + P    Y  +I      G + +A     EM   G++PN +T+S       +++ GL
Sbjct: 225 GKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYS-------SLIDGL 277

Query: 384 CKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK      A ++   M       +++TYSS+I   CK+  + ++  ++D + L G  PD 
Sbjct: 278 CKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDA 337

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
           G +  ++  L D  +  +AA  L
Sbjct: 338 GLFGKLIVGLCDAGRAVEAANYL 360


>gi|413950866|gb|AFW83515.1| hypothetical protein ZEAMMB73_465290 [Zea mays]
          Length = 478

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/468 (44%), Positives = 296/468 (63%), Gaps = 14/468 (2%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEY----ANGFRHDNSTFSLMISKL 60
           T  KW   +T+  + +L+RAE+D  +AL IFD ATA       +      +T SL+ S+L
Sbjct: 7   TPPKWPKTLTADHLHRLVRAERDPRRALAIFDGATAAASTSAPDPITPSLATVSLLTSRL 66

Query: 61  VSANQFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVF-DKMKEFGCE 117
            SA     A  LL R       +   E  FL + R + R HRPL A+ +F     +    
Sbjct: 67  ASAGHLPLATSLLSRSRGVFPSVAALEPPFLGLLRAFSRTHRPLAALHLFRSAPSDLALP 126

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT-MDAAF 176
            + +SY  VLA LV  + L LA      MR  G  P  A+ NVL+KA C ++   ++ A 
Sbjct: 127 HSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKAHCSDAAAHIEDAL 186

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           ++FR +P     PD  +Y T+I+GLCR G++ EA ++F EM  K  +PTVVTYT++I+ L
Sbjct: 187 RLFRNIPK----PDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWL 242

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
            +    ++A+++F EM  +GV PN+ TYSSL+DGLCKGG ++ A+ELL  MI ++  PN+
Sbjct: 243 AREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIKEKKLPNM 302

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           +TYS++++GLCKE  L EA+EILDRM+LQG KPDAGL+GK+I   CD G+  EAAN+LDE
Sbjct: 303 ITYSSVIDGLCKEHMLSEAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDE 362

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
           MVL GI PNR+TWSLH RI+NTV+  LC K +  RAFQVY S R RSIS D  T+  L+ 
Sbjct: 363 MVLAGIEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQSTRTRSISTDPTTFHLLVE 422

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            F  K +I K+AR+V +++ + C+P+  TW  +++  W ++K+RQ A+
Sbjct: 423 SF-SKNNIEKAARVVLDMLSERCIPERETWDVIISGYWSKKKVRQEAK 469



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 149/323 (46%), Gaps = 22/323 (6%)

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD----SYTYGTLINGLCRLGK 206
           I P +A++++L   L  ++G +  A  +     +RG  P        +  L+    R  +
Sbjct: 52  ITPSLATVSLLTSRLA-SAGHLPLATSLLSR--SRGVFPSVAALEPPFLGLLRAFSRTHR 108

Query: 207 IYEAKELFKEMETKACSP-TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
              A  LF+   +    P +  +Y +++  L     +  A  L  +MR+ G  P   TY+
Sbjct: 109 PLAALHLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYN 168

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            L+    K  CS  A  +   +   R+  +P++ +Y+T+++GLC+ G+L EA+++   M 
Sbjct: 169 VLL----KAHCSDAAAHIEDALRLFRNIPKPDVCSYNTIIDGLCRRGRLAEALDMFSEMV 224

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            + + P    Y  +I      G + +A     EM   G++PN +T+S       +++ GL
Sbjct: 225 GKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYS-------SLIDGL 277

Query: 384 CKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK      A ++   M       + +TYSS+I   CK+  + ++  I+D + L G  PD 
Sbjct: 278 CKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLCKEHMLSEAMEILDRMRLQGRKPDA 337

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
           G +  ++  L D  +  +AA  L
Sbjct: 338 GLFGKLIVGLCDAGRAVEAANYL 360


>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
 gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
          Length = 647

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 291/477 (61%), Gaps = 36/477 (7%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           +W   +T+  + +L+RAE+D  +AL +FD+ATA  ++    D+ST +       +A    
Sbjct: 109 RWPKTLTADHLHRLVRAERDPRRALALFDAATARPSSASPPDDSTAA-------AAAPVL 161

Query: 68  PAEDLLDRVNKEKCDIT----------------------EDIFLSICRGYGRVHRPLDAM 105
           P+ D +  +       +                      E  FLS+ R Y R H+PL A+
Sbjct: 162 PSRDTVSLLTSRLASASLLPLASSLLSRSRELFPSPGELEPPFLSLLRAYSRAHQPLAAL 221

Query: 106 RVFDKMKE-FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            +F       G   + +SY  VLA LV  + L LA      MR  G  P  A+ NVL+KA
Sbjct: 222 HLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKA 281

Query: 165 LCKNSGT-MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            C ++   +D A ++FR +P     PD+ +Y T+I+GLCR G++ EA++LF EM     +
Sbjct: 282 HCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTA 337

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PTVVTYT+LI+ L +    ++A++LF+EM  +G+ PNV TYSSL+DGLCKGG ++ A+EL
Sbjct: 338 PTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVEL 397

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M+ +R  PN +TYS++++GLCKEG L +A+EILDRM+LQG KPDAGL+GK+I   CD
Sbjct: 398 LDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCD 457

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
            G+  EA+N+LDEM   GI PNRLTWSLH RI++ VV  LC K +  RAFQVY SMR R 
Sbjct: 458 AGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRG 517

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           IS    T+  L+ C  KK ++ K+A +V +++ + C+P+  TW  ++ A W ++K+R
Sbjct: 518 ISTKPTTFHLLVECLSKKNNLEKAAHVVRDMLSERCIPERETWDTIVRAYWSKKKLR 574



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 129/274 (47%), Gaps = 15/274 (5%)

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSP-TVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
           +L+    R  +   A  LF+   +    P +  +YT+++  L     +  A  L  +MR+
Sbjct: 206 SLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRA 265

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH--RPNIVTYSTLLNGLCKEGKL 312
            G  P   TY+ L+    K  CS  A+ +   +   R+  +P+  +Y+T+++GLC+ G+L
Sbjct: 266 AGFAPTTATYNVLV----KAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCRRGRL 321

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++   M   G  P    Y  +I        + +A    DEM   GI PN +T+S  
Sbjct: 322 PEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYS-- 379

Query: 373 IRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
                +++ GLCK      A ++   M       +++TYSS+I   CK+G + ++  I+D
Sbjct: 380 -----SLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILD 434

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + L G  PD G +  ++  L D  +  +A+  L
Sbjct: 435 RMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYL 468



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 13/240 (5%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           + SL+    ++     A+ LF    S  G+  +  +Y++++  L      S A  LL  M
Sbjct: 204 FLSLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADM 263

Query: 288 ISKRHRPNIVTYSTLLNGLCKEG--KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +    P   TY+ L+   C +    + +AV +   +     KPDA  Y  +I   C  G
Sbjct: 264 RAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIP----KPDACSYNTVIDGLCRRG 319

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
           +  EA +   EM+  G  P  +T++  I   + + +  C  D   A +++  M  R I  
Sbjct: 320 RLPEARDLFAEMIANGTAPTVVTYTTLI---HWLAREACFDD---ALKLFDEMARRGIMP 373

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +TYSSLI   CK G    +  ++D +V +  LP+  T+S+V+  L     + QA E+L
Sbjct: 374 NVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEIL 433


>gi|242058297|ref|XP_002458294.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
 gi|241930269|gb|EES03414.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
          Length = 534

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/461 (43%), Positives = 290/461 (62%), Gaps = 12/461 (2%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEY---ANGFRHDNSTFSLMISKLV 61
           T  KW   +T+  + +L+RAE+D  +AL IFD+ATA      +      +T SL+ S+L 
Sbjct: 7   TPPKWPKTLTADHLHRLVRAERDPRRALAIFDAATAASTSAPDPITPSPATVSLLTSRLA 66

Query: 62  SANQFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVF-DKMKEFGCEP 118
           SA     A  LL R       +   E  FL + R + R HRPL A+ +F     +     
Sbjct: 67  SAGHLPLATSLLSRSRGVFPSVAALEPPFLGLLRAFSRTHRPLAALHLFRSAPSDLALPH 126

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT-MDAAFK 177
           + +SY  VLA LV  + L LA      MR  G  P  A+ NVL+KA C ++   +  A +
Sbjct: 127 SARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKAQCSDAAADIKDALR 186

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +FR +P     PD  +Y T+I+GLCR G++  A E+F EM  K  +PTVVTYT+LI+ L 
Sbjct: 187 LFRNIPK----PDVCSYNTIIDGLCRRGRLAAALEMFSEMVGKCIAPTVVTYTTLIHWLA 242

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +    ++A+++F+EM  +GV PN+ TYSSL+DGLCKGG ++ A+EL+  MI ++  PN +
Sbjct: 243 REGCFDDALKIFDEMGRRGVSPNLVTYSSLIDGLCKGGRAASALELMDRMIKEKKLPNTI 302

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TYS++++GLCKE  L EA+E+LDRM+LQG KPDAGL+GK+I   CD G+  EAAN+LDEM
Sbjct: 303 TYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEM 362

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
           +L GI PNR+TWSLH RI+NTV+  LC K +  RAFQVY S R RSIS D  T+  L+  
Sbjct: 363 ILAGIEPNRVTWSLHTRINNTVLTALCAKGELGRAFQVYQSTRTRSISTDPTTFHLLVES 422

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           F KK ++ K+A +V +++ + C+P+  TW  +++  W ++K
Sbjct: 423 FSKKKNMEKAAHVVLDMLSERCIPERETWDVIISGYWSKKK 463



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 153/326 (46%), Gaps = 28/326 (8%)

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD----SYTYGTLINGLCRLGK 206
           I P  A++++L   L  ++G +  A  +     +RG  P        +  L+    R  +
Sbjct: 51  ITPSPATVSLLTSRLA-SAGHLPLATSLLSR--SRGVFPSVAALEPPFLGLLRAFSRTHR 107

Query: 207 IYEAKELFKEMETKACSP-TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
              A  LF+   +    P +  +Y +++  L     +  A  L  +MR+ G  P   TY+
Sbjct: 108 PLAALHLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYN 167

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            L+    K  CS  A ++   +   R+  +P++ +Y+T+++GLC+ G+L  A+E+   M 
Sbjct: 168 VLL----KAQCSDAAADIKDALRLFRNIPKPDVCSYNTIIDGLCRRGRLAAALEMFSEMV 223

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            + + P    Y  +I      G + +A    DEM   G++PN +T+S       +++ GL
Sbjct: 224 GKCIAPTVVTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTYS-------SLIDGL 276

Query: 384 CKTDPNRAFQVYLSMRNRSIS----VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
           CK    RA    L + +R I      +++TYSS+I   CK+  + ++  ++D + L G  
Sbjct: 277 CKG--GRAASA-LELMDRMIKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRK 333

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           PD G +  ++  L D  +  +AA  L
Sbjct: 334 PDAGLFGKLIVGLCDAGRAVEAANYL 359


>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
          Length = 571

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 291/477 (61%), Gaps = 36/477 (7%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           +W   +T+  + +L+RAE+D  +AL +FD+ATA  ++    D+ST +       +A    
Sbjct: 10  RWPKTLTADHLHRLVRAERDPRRALALFDAATARPSSASPPDDSTAA-------AAAPVL 62

Query: 68  PAEDLLDRVNKEKCDIT----------------------EDIFLSICRGYGRVHRPLDAM 105
           P+ D +  +       +                      E  FLS+ R Y R H+PL A+
Sbjct: 63  PSRDTVSLLTSRLASASLLPLASSLLSRSRELFPSPGELEPPFLSLLRAYSRAHQPLAAL 122

Query: 106 RVFDKMKE-FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            +F       G   + +SY  VLA LV  + L LA      MR  G  P  A+ NVL+KA
Sbjct: 123 HLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKA 182

Query: 165 LCKNSGT-MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            C ++   +D A ++FR +P     PD+ +Y T+I+GLCR G++ EA++LF EM     +
Sbjct: 183 HCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTA 238

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PTVVTYT+LI+ L +    ++A++LF+EM  +G+ PNV TYSSL+DGLCKGG ++ A+EL
Sbjct: 239 PTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVEL 298

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M+ +R  PN +TYS++++GLCKEG L +A+EILDRM+LQG KPDAGL+GK+I   CD
Sbjct: 299 LDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCD 358

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
            G+  EA+N+LDEM   GI PNRLTWSLH RI++ VV  LC K +  RAFQVY SMR R 
Sbjct: 359 AGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRG 418

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           IS    T+  L+ C  KK ++ K+A +V +++ + C+P+  TW  ++ A W ++K+R
Sbjct: 419 ISTKPTTFHLLVECLSKKNNLEKAAHVVRDMLSERCIPERETWDTIVRAYWSKKKLR 475



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 129/274 (47%), Gaps = 15/274 (5%)

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSP-TVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
           +L+    R  +   A  LF+   +    P +  +YT+++  L     +  A  L  +MR+
Sbjct: 107 SLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRA 166

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH--RPNIVTYSTLLNGLCKEGKL 312
            G  P   TY+ L+    K  CS  A+ +   +   R+  +P+  +Y+T+++GLC+ G+L
Sbjct: 167 AGFAPTTATYNVLV----KAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCRRGRL 222

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++   M   G  P    Y  +I        + +A    DEM   GI PN +T+S  
Sbjct: 223 PEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYS-- 280

Query: 373 IRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
                +++ GLCK      A ++   M       +++TYSS+I   CK+G + ++  I+D
Sbjct: 281 -----SLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILD 335

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + L G  PD G +  ++  L D  +  +A+  L
Sbjct: 336 RMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYL 369



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 13/240 (5%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           + SL+    ++     A+ LF    S  G+  +  +Y++++  L      S A  LL  M
Sbjct: 105 FLSLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADM 164

Query: 288 ISKRHRPNIVTYSTLLNGLCKEG--KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +    P   TY+ L+   C +    + +AV +   +     KPDA  Y  +I   C  G
Sbjct: 165 RAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIP----KPDACSYNTVIDGLCRRG 220

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
           +  EA +   EM+  G  P  +T++  I   + + +  C  D   A +++  M  R I  
Sbjct: 221 RLPEARDLFAEMIANGTAPTVVTYTTLI---HWLAREACFDD---ALKLFDEMARRGIMP 274

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +TYSSLI   CK G    +  ++D +V +  LP+  T+S+V+  L     + QA E+L
Sbjct: 275 NVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEIL 334


>gi|255564122|ref|XP_002523058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537620|gb|EEF39243.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 286

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/286 (65%), Positives = 228/286 (79%), Gaps = 5/286 (1%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           M  KT+FKWS KIT +QV Q+IRAEKD+ KA ++FDSATAEY++GF+HDNSTFS +ISKL
Sbjct: 1   MATKTLFKWSKKITPSQVEQVIRAEKDIEKAKLVFDSATAEYSHGFKHDNSTFSAIISKL 60

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           +SANQF   ED+L+R+ +EKC+ITEDIFLSICR YGRVHRPLD++RVF KMK+F C+ T 
Sbjct: 61  LSANQFTLVEDMLNRMKQEKCNITEDIFLSICRAYGRVHRPLDSIRVFHKMKDFECKATQ 120

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           KSYITV AILVEEN+LK A RFY+HMRE+GI   V SLNVLIKALCKNS T+DAAF+IF 
Sbjct: 121 KSYITVFAILVEENRLKDAMRFYQHMREMGISASVVSLNVLIKALCKNSSTIDAAFRIFN 180

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           EMPNRGC PDSYTYGTLINGLCR GKI+EAKELF EMETK CSP+VVTY+ LI+G     
Sbjct: 181 EMPNRGCNPDSYTYGTLINGLCRFGKIWEAKELFIEMETKCCSPSVVTYSCLIHG----- 235

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            + +A+RL +EM   G  P+  T++ ++ G        +A ELL +
Sbjct: 236 DLHKAIRLVDEMVLDGCVPDQLTWTVVLCGFLDRRKVWEASELLAI 281



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 124/244 (50%), Gaps = 13/244 (5%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           G +    ++  +++ L+  NQ  L       M++   + C  + ++ + ++C+  G +  
Sbjct: 45  GFKHDNSTFSAIISKLLSANQFTLVEDMLNRMKQ---EKCNITEDIFL-SICRAYGRVHR 100

Query: 175 ---AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              + ++F +M +  C     +Y T+   L    ++ +A   ++ M     S +VV+   
Sbjct: 101 PLDSIRVFHKMKDFECKATQKSYITVFAILVEENRLKDAMRFYQHMREMGISASVVSLNV 160

Query: 232 LINGLCQ-SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           LI  LC+ S +++ A R+F EM ++G  P+ +TY +L++GLC+ G   +A EL   M +K
Sbjct: 161 LIKALCKNSSTIDAAFRIFNEMPNRGCNPDSYTYGTLINGLCRFGKIWEAKELFIEMETK 220

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++VTYS L++     G L +A+ ++D M L G  PD   +  ++  F D  K  EA
Sbjct: 221 CCSPSVVTYSCLIH-----GDLHKAIRLVDEMVLDGCVPDQLTWTVVLCGFLDRRKVWEA 275

Query: 351 ANFL 354
           +  L
Sbjct: 276 SELL 279



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 49/290 (16%)

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
           + G   D+ T+  +I+ L    +    +++   M+ + C+ T   + S+     +     
Sbjct: 43  SHGFKHDNSTFSAIISKLLSANQFTLVEDMLNRMKQEKCNITEDIFLSICRAYGRVHRPL 102

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           +++R+F +M+    +    +Y ++   L +      AM   Q M       ++V+ + L+
Sbjct: 103 DSIRVFHKMKDFECKATQKSYITVFAILVEENRLKDAMRFYQHMREMGISASVVSLNVLI 162

Query: 304 NGLCKEGK-LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
             LCK    +  A  I + M  +G  PD+  YG                           
Sbjct: 163 KALCKNSSTIDAAFRIFNEMPNRGCNPDSYTYG--------------------------- 195

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
                          T++ GLC+      A ++++ M  +  S   +TYS LI      G
Sbjct: 196 ---------------TLINGLCRFGKIWEAKELFIEMETKCCSPSVVTYSCLI-----HG 235

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           D+HK+ R+VDE+VLDGC+PD+ TW+ V+    DRRK+ +A+ELL +EL++
Sbjct: 236 DLHKAIRLVDEMVLDGCVPDQLTWTVVLCGFLDRRKVWEASELLAIELLS 285


>gi|222619024|gb|EEE55156.1| hypothetical protein OsJ_02962 [Oryza sativa Japonica Group]
          Length = 428

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 156/321 (48%), Positives = 223/321 (69%), Gaps = 6/321 (1%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGT-MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
           MR  G  P  A+ NVL+KA C ++   +D A ++FR +P     PD+ +Y T+I+GLCR 
Sbjct: 1   MRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGLCRR 56

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G++ EA++LF EM     +PTVVTYT+LI+ L +    ++A++LF+EM  +G+ PNV TY
Sbjct: 57  GRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTY 116

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           SSL+DGLCKGG ++ A+ELL  M+ +R  PN +TYS++++GLCKEG L +A+EILDRM+L
Sbjct: 117 SSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRL 176

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           QG KPDAGL+GK+I   CD G+  EA+N+LDEM   GI PNRLTWSLH RI++ VV  LC
Sbjct: 177 QGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALC 236

Query: 385 -KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
            K +  RAFQVY SMR R IS    T+  L+ C  KK ++ K+A +V +++ + C+P+  
Sbjct: 237 SKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDMLSERCIPERE 296

Query: 444 TWSAVMTALWDRRKMRQAAEL 464
           TW  ++ A W ++K+R    +
Sbjct: 297 TWDTIVRAYWSKKKLRAVGSV 317



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 145/336 (43%), Gaps = 35/336 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV--NKEKCDITEDIFLSICRGYGRVHR 100
           A GF    +T+++++ K   ++   P +D + RV  N  K D     + ++  G  R  R
Sbjct: 3   AAGFAPTTATYNVLV-KAHCSDAAVPIDDAV-RVFRNIPKPDACS--YNTVIDGLCRRGR 58

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A  +F +M   G  PT  +Y T++  L  E     A + +  M   GI P V + + 
Sbjct: 59  LPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSS 118

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  LCK  G   +A ++   M      P++ TY ++I+GLC+ G + +A E+   M  +
Sbjct: 119 LIDGLCKG-GRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQ 177

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P    +  LI GLC +    EA    +EM   G+ PN  T+S               
Sbjct: 178 GRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWS--------------- 222

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
                  +  R    +VT       LC +G++  A ++   M+ +G+      +  ++ C
Sbjct: 223 -------LHGRINDAVVT------ALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVEC 269

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
                  ++AA+ + +M+     P R TW   +R +
Sbjct: 270 LSKKNNLEKAAHVVRDMLSERCIPERETWDTIVRAY 305



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 14/217 (6%)

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH--RPNIVTYSTLLNGLCKE 309
           MR+ G  P   TY+ L+    K  CS  A+ +   +   R+  +P+  +Y+T+++GLC+ 
Sbjct: 1   MRAAGFAPTTATYNVLV----KAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCRR 56

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+L EA ++   M   G  P    Y  +I        + +A    DEM   GI PN +T+
Sbjct: 57  GRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTY 116

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           S       +++ GLCK      A ++   M       +++TYSS+I   CK+G + ++  
Sbjct: 117 S-------SLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAME 169

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I+D + L G  PD G +  ++  L D  +  +A+  L
Sbjct: 170 ILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYL 206


>gi|255536721|ref|XP_002509427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549326|gb|EEF50814.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 277

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 145/297 (48%), Positives = 181/297 (60%), Gaps = 45/297 (15%)

Query: 76  VNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
           + +EKC+ITEDIFLSIC+ YGRVHRPLD++RVF KMK+F C+PT KSYITV AILVEEN+
Sbjct: 1   MKQEKCNITEDIFLSICKAYGRVHRPLDSIRVFHKMKDFECKPTQKSYITVFAILVEENR 60

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           LK A RFY+HMRE+GI   V SLN+LIKALCKNS T+D AF+I  EMPNRGC P+SYTYG
Sbjct: 61  LKDAMRFYQHMREMGISTSVVSLNILIKALCKNSSTIDVAFRILSEMPNRGCNPNSYTYG 120

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACS-----------PTVVTYTSLINGLCQSKSVEE 244
           TLIN LCR  KI+EAKELF EMETKA             P    Y  +INGLC++  ++E
Sbjct: 121 TLINSLCRFRKIWEAKELFIEMETKAVEMLDKMKLQGIKPDAGLYGKIINGLCENCKLQE 180

Query: 245 AMRLFEEMRSKGVEPNVFTYS-------SLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           A    +EM   G+ PN  T+S        ++ GLC  G  ++A +L              
Sbjct: 181 AANFLDEMVLVGISPNRLTWSLHVRTNNIVVQGLCSIGDLNRAFQL-------------- 226

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
                         L +A  ++D M L G  PD   +  ++  F D  K  EA+  L
Sbjct: 227 -------------DLHKATRLVDEMVLDGCVPDQMTWSVVLCGFLDRRKVWEASKLL 270



 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 122/303 (40%), Positives = 176/303 (58%), Gaps = 40/303 (13%)

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M    C      + ++     R+ +  ++  +F +M+   C PT  +Y ++   L +   
Sbjct: 1   MKQEKCNITEDIFLSICKAYGRVHRPLDSIRVFHKMKDFECKPTQKSYITVFAILVEENR 60

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS-SQAMELLQMMISKRHRPNIVTYS 300
           +++AMR ++ MR  G+  +V + + L+  LCK   +   A  +L  M ++   PN  TY 
Sbjct: 61  LKDAMRFYQHMREMGISTSVVSLNILIKALCKNSSTIDVAFRILSEMPNRGCNPNSYTYG 120

Query: 301 TLLNGLCKEGKLQEA-----------VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           TL+N LC+  K+ EA           VE+LD+MKLQG+KPDAGLYGKII+  C+  K QE
Sbjct: 121 TLINSLCRFRKIWEAKELFIEMETKAVEMLDKMKLQGIKPDAGLYGKIINGLCENCKLQE 180

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSL 408
           AANFLDEMVL GI+PNRLTWSLH+R +N VVQGLC   D NRAFQ+              
Sbjct: 181 AANFLDEMVLVGISPNRLTWSLHVRTNNIVVQGLCSIGDLNRAFQL-------------- 226

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
                        D+HK+ R+VDE+VLDGC+PD+ TWS V+    DRRK+ +A++LL +E
Sbjct: 227 -------------DLHKATRLVDEMVLDGCVPDQMTWSVVLCGFLDRRKVWEASKLLAIE 273

Query: 469 LMN 471
           L++
Sbjct: 274 LLS 276


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 147/449 (32%), Positives = 246/449 (54%), Gaps = 15/449 (3%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V+  +   ++  KAL  F S   E       +  T+++MI  L  AN+   A     ++ 
Sbjct: 100 VIHALCKARNTAKALDYFRSMECE------KNVITWTIMIDGLCKANRLPEATTYFAKMK 153

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+     E  +  +  G+ +VH+   A  +  +MKE G  P   +Y TV+     + ++ 
Sbjct: 154 KKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVD 213

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A++ +R M E G  P + + N L+  LC+N G MD A+++  EM  RG  PD ++Y TL
Sbjct: 214 TAYKLFRQMVENGCMPNLVTYNTLLSGLCRN-GLMDEAYELLDEMRERGLQPDKFSYDTL 272

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           + GLC+ GKI  A ++F++     C P VV Y++LI GLC++  ++EA +LFE+MR    
Sbjct: 273 MAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSC 332

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
           EP+V T+++LMDGLCKG    +A ++L+ M  +   PN++TYS+L++GLCK G++++A E
Sbjct: 333 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQE 392

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +  RM ++G++P+   Y  +I  FC       A   ++EM   G  P+ +T+       N
Sbjct: 393 VFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY-------N 445

Query: 378 TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           T++ GLCKT     A +++  M+ +  + D +TYS LI  FCK   I  +  + D+++  
Sbjct: 446 TLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ 505

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             LPD  T+S ++    +   +  A  LL
Sbjct: 506 AVLPDVVTFSTLVEGYCNAGLVDDAERLL 534



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 126/419 (30%), Positives = 223/419 (53%), Gaps = 10/419 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D   +S +I+ L  A +   A  L +++ +  C+     F ++  G  +  R  +A +V 
Sbjct: 300 DVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 359

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M++  C P   +Y +++  L +  Q++ A   ++ M   GI+P V + N LI   C  
Sbjct: 360 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMT 419

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G +D+A  +  EM   GC PD  TY TLI+GLC+ G+  EA  LF +M+ K C+P V+T
Sbjct: 420 NG-VDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT 478

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y+ LI G C+ + ++ A  LF++M  + V P+V T+S+L++G C  G    A  LL+ M+
Sbjct: 479 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 538

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +    P++ TY++L++G CK G++ EA  +L RM  +G +P+   Y  +I  FC  GK  
Sbjct: 539 ASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPT 598

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSM-RNRSISVD 406
            A   L+EMV  G+ PN +T+        +++ G C T D   A ++   + R+ +   D
Sbjct: 599 VAYRLLEEMVGNGVQPNVITY-------RSLIGGFCGTGDLEEARKILERLERDENCKAD 651

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              Y  ++   C+ G +  +  +++ +   G  P    + A++  L   +++ +A E+L
Sbjct: 652 MFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVL 710



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 194/367 (52%), Gaps = 13/367 (3%)

Query: 101 PLDAMRVFD-KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           P  A+R F    K+ G +    +Y  +   L+   ++       ++    GI P V +  
Sbjct: 4   PDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYA 63

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           V+I+ LCK SG +D A ++  EM   G  PD+  Y  +I+ LC+     +A + F+ ME 
Sbjct: 64  VVIQGLCK-SGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME- 121

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
             C   V+T+T +I+GLC++  + EA   F +M+ KG  PN +TY+ L++G CK     +
Sbjct: 122 --CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHR 179

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  LL+ M      PN+VTYST+++G C++ K+  A ++  +M   G  P+   Y  ++S
Sbjct: 180 AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 239

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
             C  G   EA   LDEM   G+ P++ ++       +T++ GLCKT   + A +V+   
Sbjct: 240 GLCRNGLMDEAYELLDEMRERGLQPDKFSY-------DTLMAGLCKTGKIDMALKVFEDN 292

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
            N     D + YS+LI   CK G + ++ ++ +++  + C PD  T++A+M  L    ++
Sbjct: 293 SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRL 352

Query: 459 RQAAELL 465
           ++A ++L
Sbjct: 353 QEAQQVL 359



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 164/316 (51%), Gaps = 2/316 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T++ +I      N    A  L++ +    C      + ++  G  +  R  +A
Sbjct: 401 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 460

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+F  MK   C P   +Y  ++    +  ++ +A   +  M +  + P V + + L++ 
Sbjct: 461 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEG 520

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C N+G +D A ++  EM    C+PD YTY +L++G C++G++ EA+ + K M  + C P
Sbjct: 521 YC-NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQP 579

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+LI+  C++     A RL EEM   GV+PNV TY SL+ G C  G   +A ++L
Sbjct: 580 NVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKIL 639

Query: 285 QMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           + +    + + ++  Y  +++GLC+ G++  A+E+L+ +K  G  P   +Y  +I   C 
Sbjct: 640 ERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQ 699

Query: 344 IGKYQEAANFLDEMVL 359
             +  +A   L+EM L
Sbjct: 700 GKELGKAMEVLEEMTL 715



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  TFS ++    +A     AE LL+ +    C      + S+  G+ +V R ++A RV 
Sbjct: 510 DVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVL 569

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M + GC+P   +Y  ++       +  +A+R    M   G+QP V +   LI   C  
Sbjct: 570 KRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFC-G 628

Query: 169 SGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           +G ++ A KI   +  +  C  D + Y  +++GLCR G++  A EL + ++     P   
Sbjct: 629 TGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHD 688

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMR-SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            Y +LI GLCQ K + +AM + EEM  S+   PN   Y +++  L + G   +A  L   
Sbjct: 689 IYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADE 748

Query: 287 MISKR 291
           ++  +
Sbjct: 749 LLGNK 753



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 243 EEAMRLFE-EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           + A+R F    + +G + NV+TY+ L + L +     +   +L+        PN+ TY+ 
Sbjct: 5   DAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAV 64

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           ++ GLCK G L +A E+L+ M+  G  PDA +Y  +I   C   K +  A  LD      
Sbjct: 65  VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALC---KARNTAKALDYFRSME 121

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
              N +TW++       ++ GLCK +    A   +  M+ +    +  TY+ LI  FCK 
Sbjct: 122 CEKNVITWTI-------MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKV 174

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             +H++  ++ E+   G  P+  T+S V+     + K+  A +L    + N C+
Sbjct: 175 HKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM 228


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 140/415 (33%), Positives = 234/415 (56%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+++MI  L  AN+   A     ++ K+     E  +  +  G+ +VH+   A  +  +M
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           KE G  P   +Y TV+     + ++  A++ +R M E G  P + + N L+  LC+N G 
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN-GL 127

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           MD A+++  EM  RG  PD ++Y TL+ GLC+ GKI  A ++F++     C P VV Y++
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 187

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI GLC++  ++EA +LFE+MR    EP+V T+++LMDGLCKG    +A ++L+ M  + 
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 247

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN++TYS+L++GLCK G++++A E+  RM ++G++P+   Y  +I  FC       A 
Sbjct: 248 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 307

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTY 410
             ++EM   G  P+ +T+       NT++ GLCKT     A +++  M+ +  + D +TY
Sbjct: 308 LLMEEMTATGCLPDIITY-------NTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITY 360

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           S LI  FCK   I  +  + D+++    LPD  T+S ++    +   +  A  LL
Sbjct: 361 SCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLL 415



 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 233/441 (52%), Gaps = 15/441 (3%)

Query: 28  VNKALVIFDSATAEYANG-FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ AL +F+    + +NG    D   +S +I+ L    +   A  L +++ +  C+    
Sbjct: 163 IDMALKVFE----DNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVV 218

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            F ++  G  +  R  +A +V + M++  C P   +Y +++  L +  Q++ A   ++ M
Sbjct: 219 TFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 278

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              GI+P V + N LI   C  +G +D+A  +  EM   GC PD  TY TLI+GLC+ G+
Sbjct: 279 IVRGIEPNVVTYNSLIHGFCMTNG-VDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGR 337

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
             EA  LF +M+ K C+P V+TY+ LI G C+ + ++ A  LF++M  + V P+V T+S+
Sbjct: 338 APEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFST 397

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L++G C  G    A  LL+ M++    P++ TY++L++G CK G++ EA  +L RM  +G
Sbjct: 398 LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG 457

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
            +P+   Y  +I  FC  GK   A   L+EMV  G+ PN +T+        +++ G C T
Sbjct: 458 CQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITY-------RSLIGGFCGT 510

Query: 387 -DPNRAFQVYLSM-RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
            D   A ++   + R+ +   D   Y  ++   C+ G +  +  +++ +   G  P    
Sbjct: 511 GDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDI 570

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           + A++  L   +++ +A E+L
Sbjct: 571 YVALIRGLCQGKELGKAMEVL 591



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 194/351 (55%), Gaps = 9/351 (2%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           CE    ++  ++  L + N+L  A  ++  M++ G  P   + NVLI   CK    +  A
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVH-KVHRA 61

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           + + +EM   G  P+  TY T+I+G CR  K+  A +LF++M    C P +VTY +L++G
Sbjct: 62  YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSG 121

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           LC++  ++EA  L +EMR +G++P+ F+Y +LM GLCK G    A+++ +   +    P+
Sbjct: 122 LCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPD 181

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +V YSTL+ GLCK G+L EA ++ ++M+    +PD   +  ++   C   + QEA   L+
Sbjct: 182 VVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLE 241

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLI 414
            M     TPN +T+S       +++ GLCKT   R A +V+  M  R I  + +TY+SLI
Sbjct: 242 TMEDRNCTPNVITYS-------SLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLI 294

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             FC    +  +  +++E+   GCLPD  T++ ++  L    +  +A  L 
Sbjct: 295 HGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLF 345



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 164/316 (51%), Gaps = 2/316 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T++ +I      N    A  L++ +    C      + ++  G  +  R  +A
Sbjct: 282 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 341

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+F  MK   C P   +Y  ++    +  ++ +A   +  M +  + P V + + L++ 
Sbjct: 342 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEG 401

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C N+G +D A ++  EM    C+PD YTY +L++G C++G++ EA+ + K M  + C P
Sbjct: 402 YC-NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQP 460

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+LI+  C++     A +L EEM   GV+PNV TY SL+ G C  G   +A ++L
Sbjct: 461 NVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKML 520

Query: 285 QMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           + +    + + ++  Y  +++GLC+ G++  A+E+L+ +K  G  P   +Y  +I   C 
Sbjct: 521 ERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQ 580

Query: 344 IGKYQEAANFLDEMVL 359
             +  +A   L+EM L
Sbjct: 581 GKELGKAMEVLEEMTL 596



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  TFS ++    +A     AE LL+ +    C      + S+  G+ +V R ++A RV 
Sbjct: 391 DVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVL 450

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M + GC+P   +Y  ++       +  +A++    M   G+QP V +   LI   C  
Sbjct: 451 KRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFC-G 509

Query: 169 SGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           +G ++ A K+   +  +  C  D + Y  +++GLCR G++  A EL + ++     P   
Sbjct: 510 TGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHD 569

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMR-SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            Y +LI GLCQ K + +AM + EEM  S+   PN   Y +++  L + G   +A  L   
Sbjct: 570 IYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADE 629

Query: 287 MISKR 291
           ++  +
Sbjct: 630 LLGNK 634



 Score = 44.7 bits (104), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           N +TW++       ++ GLCK +    A   +  M+ +    +  TY+ LI  FCK   +
Sbjct: 6   NVITWTI-------MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKV 58

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           H++  ++ E+   G  P+  T+S V+     + K+  A +L    + N C+
Sbjct: 59  HRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM 109


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 238/421 (56%), Gaps = 13/421 (3%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           +R  +STF  +I+   +   F+  E +LDR+  EK  I E  F+ I + YG+ H P  A+
Sbjct: 86  YRLGDSTFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFEKCFIVIFKAYGKAHLPEKAV 145

Query: 106 RVFDKMK-EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REIGIQPCVASLNVL 161
            +FD+M  EF C+ T KS+ +VL ++++E     A  FY H+   + + I P V + N++
Sbjct: 146 DLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLV 205

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IKA+CK  G +D A ++FR+M  R C PD YTY TL++GLC+  +I EA  L  EM+   
Sbjct: 206 IKAMCK-VGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDG 264

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P+ VT+  LINGLC+   +  A +L + M  KG  PN  TY++L+ GLC  G   +A+
Sbjct: 265 CFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAI 324

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL  M+S +  PN+VTY T++NGL K+G+  +   +L  M+ +G   +  +Y  +IS  
Sbjct: 325 SLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGL 384

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
              GK QEA +   EM + G       + L+  +++ V+ GLC+   P+ A +V   M N
Sbjct: 385 FKEGKSQEAMHLFKEMTVKG-------YELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTN 437

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  + ++ T SSL+  F + G+ H++  +  ++       +E  +S ++  L    K+++
Sbjct: 438 KGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKE 497

Query: 461 A 461
           A
Sbjct: 498 A 498



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 211/455 (46%), Gaps = 9/455 (1%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL +I  E   ++AL  ++            +  TF+L+I  +        A  +   + 
Sbjct: 167 VLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMT 226

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
             KC+     + ++  G  +  R  +A+ + D+M+  GC P+P ++  ++  L ++  L 
Sbjct: 227 IRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLS 286

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A +   +M   G  P   + N LI  LC   G ++ A  +   M +  C P+  TYGT+
Sbjct: 287 RAAKLVDNMFLKGCIPNEVTYNTLIHGLCL-KGKLEKAISLLDRMVSSKCVPNVVTYGTI 345

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           INGL + G+  +   +   ME +        Y++LI+GL +    +EAM LF+EM  KG 
Sbjct: 346 INGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGY 405

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
           E N   YS+++DGLC+ G    A+E+L  M +K   PN  T S+L+ G  + G    AVE
Sbjct: 406 ELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVE 465

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +   M       +   Y  +I   C  GK +EA     +M+  G  P+ + +S    I+ 
Sbjct: 466 VWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYS--SMING 523

Query: 378 TVVQGLCKTDPNRAFQVYLSM--RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             + GL +     A Q+Y  M  +      D +TY+ L+   CK+  I ++  +++ ++ 
Sbjct: 524 LSIAGLVED----AMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLD 579

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
            GC PD  T +  +  L ++    Q     L EL+
Sbjct: 580 RGCDPDLVTCTIFLRMLREKLDPPQDGREFLDELV 614



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 161/384 (41%), Gaps = 97/384 (25%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+++A  + D+    +  G   +  T++ +I  L    +   A  LLDR+   KC     
Sbjct: 284 DLSRAAKLVDNM---FLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVV 340

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + +I  G  +  R LD   V   M+E G       Y T+++ L +E + + A   ++ M
Sbjct: 341 TYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEM 400

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT------------- 193
              G +      + +I  LC++ G  D A ++  EM N+GCTP++YT             
Sbjct: 401 TVKGYELNTIVYSAVIDGLCRD-GKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGN 459

Query: 194 ----------------------YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
                                 Y  LI+GLC+ GK+ EA  ++ +M  K C P VV Y+S
Sbjct: 460 SHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSS 519

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKG--VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           +INGL  +  VE+AM+L+ EM  +G   +P+V TY+ L++ LCK    S+A++LL  M+ 
Sbjct: 520 MINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLD 579

Query: 290 ---------------------------------------KRHR----------------- 293
                                                  KR R                 
Sbjct: 580 RGCDPDLVTCTIFLRMLREKLDPPQDGREFLDELVVRLLKRQRVLGASKIVEVMLQKLLP 639

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVE 317
           P   T++ ++  LCK  K+Q  ++
Sbjct: 640 PKHSTWARVVENLCKPKKVQAVIQ 663



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 133/310 (42%), Gaps = 60/310 (19%)

Query: 177 KIFREMPNRGCTPDSY-----TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV---T 228
           KIF+  P  G    SY     T+ +LIN    LG   + K L K ++   C   V+    
Sbjct: 75  KIFKSGPKMG----SYRLGDSTFYSLINNYANLG---DFKSLEKVLDRMKCEKRVIFEKC 127

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  +     ++   E+A+ LF+ M                   C+  C            
Sbjct: 128 FIVIFKAYGKAHLPEKAVDLFDRMA------------------CEFECKRTGK------- 162

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM---KLQGLKPDAGLYGKIISCFCDIG 345
                    +++++LN + +EG    A+E  + +   K   + P+   +  +I   C +G
Sbjct: 163 ---------SFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVG 213

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
              +A     +M +    P+  T+        T++ GLCK D  + A  +   M+     
Sbjct: 214 LVDDAIQVFRDMTIRKCEPDVYTYC-------TLMDGLCKADRIDEAVSLLDEMQIDGCF 266

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
              +T++ LI   CKKGD+ ++A++VD + L GC+P+E T++ ++  L  + K+ +A  L
Sbjct: 267 PSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISL 326

Query: 465 LLLELMNKCV 474
           L   + +KCV
Sbjct: 327 LDRMVSSKCV 336



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 313 QEAVEILDRMKLQ-GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG---GITPNRLT 368
           ++AV++ DRM  +   K     +  +++     G +  A  F + ++      I+PN LT
Sbjct: 142 EKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLT 201

Query: 369 WSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           ++L       V++ +CK    + A QV+  M  R    D  TY +L+   CK   I ++ 
Sbjct: 202 FNL-------VIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAV 254

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            ++DE+ +DGC P   T++ ++  L  +  + +AA+L+    +  C+  EV
Sbjct: 255 SLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEV 305


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 230/421 (54%), Gaps = 13/421 (3%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           ++  +STF  +I    +   F+  E +LDR+  EK  + E  F+ I + YG+ H P  A+
Sbjct: 56  YKLGDSTFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKAV 115

Query: 106 RVFDKMK-EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REIGIQPCVASLNVL 161
            +FD+M  EF C+ T KS+ +VL ++++E     A  FY H+   + + I P V + N++
Sbjct: 116 GLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLV 175

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IK +CK  G +D A ++FR+MP   C PD YTY TL++GLC+  +I EA  L  EM+   
Sbjct: 176 IKTMCK-VGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDG 234

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P+ VT+  LINGLC+   +    +L + M  KG  PN  TY++L+ GLC  G   +A+
Sbjct: 235 CFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAI 294

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL  M+S +  PN+VTY T++NGL K+G+  +   +L  M+ +G   +  +Y  +IS  
Sbjct: 295 SLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGL 354

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
              GK QEA     EM +     N + +S        V+ GLC+   P+ A +V   M N
Sbjct: 355 FKEGKSQEAMQLFKEMTVKECELNTIVYS-------AVIDGLCRDGKPDEALEVLSEMTN 407

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
                ++ TYSSL+  F + G+ HK+  +  ++       +E  +S ++  L    K+++
Sbjct: 408 NRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKE 467

Query: 461 A 461
           A
Sbjct: 468 A 468



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 200/451 (44%), Gaps = 46/451 (10%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL +I  E    +AL  ++            +  TF+L+I  +        A  +   + 
Sbjct: 137 VLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMP 196

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
             KC      + ++  G  +  R  +A+ + D+M+  GC P+P ++              
Sbjct: 197 VSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTF-------------- 242

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                                NVLI  LCK  G +    K+   M  +GC P+  TY TL
Sbjct: 243 ---------------------NVLINGLCK-KGDLARVAKLVDNMFLKGCAPNEVTYNTL 280

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+GLC  GK+ +A  L   M +  C P VVTY ++INGL +     +  R+   M  +G 
Sbjct: 281 IHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGY 340

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
             N + YS+L+ GL K G S +AM+L + M  K    N + YS +++GLC++GK  EA+E
Sbjct: 341 HVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALE 400

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +L  M     KP+A  Y  ++  F + G   +A     +M     T N + +S+      
Sbjct: 401 VLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSV------ 454

Query: 378 TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++ GLCK      A  V+  M  +    D + Y S+I      G +  + ++ +E++  
Sbjct: 455 -LIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQ 513

Query: 437 --GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
                PD  T++ ++ AL  +  + +A +LL
Sbjct: 514 EPDSQPDVVTYNILLNALCKQSSISRAIDLL 544



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 206/439 (46%), Gaps = 32/439 (7%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T+  ++  L  A++   A  LLD +  + C  +   F  +  G  +        ++ 
Sbjct: 203 DVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLV 262

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D M   GC P   +Y T++  L  + +L+ A      M      P V +   +I  L K 
Sbjct: 263 DNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQ 322

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
              +D A ++   M  RG   + Y Y  LI+GL + GK  EA +LFKEM  K C    + 
Sbjct: 323 GRALDGA-RVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIV 381

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y+++I+GLC+    +EA+ +  EM +   +PN +TYSSLM G  + G   +A+E+ + M 
Sbjct: 382 YSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMA 441

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                 N V YS L++GLCK+GK++EA+ +  +M  +G KPD   YG +I+   + G  +
Sbjct: 442 KHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVE 501

Query: 349 EAANFLDEMVL--GGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISV 405
           +A    +EM+       P+ +T+       N ++  LCK +  +RA  +  SM +R    
Sbjct: 502 DALQLYNEMLCQEPDSQPDVVTY-------NILLNALCKQSSISRAIDLLNSMLDRGCDP 554

Query: 406 DSLT---------------------YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           D +T                        L+    K+  +  +++IV+ ++     P   T
Sbjct: 555 DLVTCIIFLRTLREKLDPPQDGREFLDGLVVRLLKRQRVLGASKIVEVMLQKLLPPKPST 614

Query: 445 WSAVMTALWDRRKMRQAAE 463
           W+ V+  L + +K++ A +
Sbjct: 615 WTRVVEDLCNPKKVQAAIQ 633



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 137/296 (46%), Gaps = 24/296 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  +   +S +IS L    + + A  L   +  ++C++   ++ ++  G  R  +P +A
Sbjct: 339 GYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEA 398

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + V  +M    C+P   +Y +++    E      A   ++ M +          +VLI  
Sbjct: 399 LEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHG 458

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKAC 222
           LCK+ G +  A  ++ +M  +GC PD   YG++INGL   G + +A +L+ EM  +    
Sbjct: 459 LCKD-GKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDS 517

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT-----------------YS 265
            P VVTY  L+N LC+  S+  A+ L   M  +G +P++ T                   
Sbjct: 518 QPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLDPPQDGR 577

Query: 266 SLMDGLCKGGCSSQ----AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
             +DGL       Q    A +++++M+ K   P   T++ ++  LC   K+Q A++
Sbjct: 578 EFLDGLVVRLLKRQRVLGASKIVEVMLQKLLPPKPSTWTRVVEDLCNPKKVQAAIQ 633



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 149/301 (49%), Gaps = 21/301 (6%)

Query: 177 KIFREMPNRGCTP--DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT---YTS 231
           KIF+  P  G     DS T+ +LI+    LG   + K L K ++   C   VV    +  
Sbjct: 45  KIFKSGPKMGSYKLGDS-TFYSLIDNYANLG---DFKSLEKVLDRMRCEKRVVVEKCFVV 100

Query: 232 LINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +     ++   E+A+ LF+ M  +   +  V +++S+++ + + G   +A+E    +I  
Sbjct: 101 IFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGA 160

Query: 291 RH---RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           +     PN++T++ ++  +CK G + +AV++   M +   +PD   Y  ++   C   + 
Sbjct: 161 KGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRI 220

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD 406
            EA + LDEM + G  P+ +T+       N ++ GLCK  D  R  ++  +M  +  + +
Sbjct: 221 DEAVSLLDEMQIDGCFPSPVTF-------NVLINGLCKKGDLARVAKLVDNMFLKGCAPN 273

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY++LI   C KG + K+  ++D +V   C+P+  T+  ++  L  + +    A +L 
Sbjct: 274 EVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLA 333

Query: 467 L 467
           L
Sbjct: 334 L 334



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 11/183 (6%)

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRM---KLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           + +++++LN + +EG    A+E  + +   K   + P+   +  +I   C +G   +A  
Sbjct: 131 VKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQ 190

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
              +M +    P+  T+        T++ GLCK D  + A  +   M+        +T++
Sbjct: 191 MFRDMPVSKCQPDVYTYC-------TLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFN 243

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            LI   CKKGD+ + A++VD + L GC P+E T++ ++  L  + K+ +A  LL   + +
Sbjct: 244 VLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSS 303

Query: 472 KCV 474
           KCV
Sbjct: 304 KCV 306



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 313 QEAVEILDRMKLQ-GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG---GITPNRLT 368
           ++AV + DRM  +   K     +  +++     G +  A  F + ++      I+PN LT
Sbjct: 112 EKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLT 171

Query: 369 WSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       N V++ +CK    + A Q++  M       D  TY +L+   CK   I ++ 
Sbjct: 172 F-------NLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAV 224

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            ++DE+ +DGC P   T++ ++  L  +  + + A+L+    +  C   EV
Sbjct: 225 SLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEV 275


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 152/423 (35%), Positives = 232/423 (54%), Gaps = 10/423 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D STF+++I  L  A+Q RPA  +L+ +        E  F +I +GY        A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGA 243

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIK 163
           +R+ ++M EFGC  +  S   ++    +E +++ A  F + M  + G  P   + N L+ 
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +G +  A +I   M   G  PD YTY ++I+GLC+LG++ EA E   +M T+ CS
Sbjct: 304 GLCK-AGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCS 362

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY +LI+ LC+   VEEA  L   + SKG+ P+V T++SL+ GLC       AMEL
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M SK   P+  TY+ L++ LC +GKL EA+ +L +M+L G       Y  +I  FC 
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             K +EA    DEM + G++ N +T+       NT++ GLCK+     A Q+   M    
Sbjct: 483 ANKIREAEEIFDEMEVHGVSRNSVTY-------NTLIDGLCKSRRVEDASQLMDQMIMEG 535

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              D  TY+SL+T FC+ GDI K+A IV  +  +GC PD  T+  +++ L    ++  A+
Sbjct: 536 QKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595

Query: 463 ELL 465
           +LL
Sbjct: 596 KLL 598



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 244/455 (53%), Gaps = 13/455 (2%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           +  ++L  +R++ D + AL +F+ A+ +    F  + + +  ++ +L  +  F     +L
Sbjct: 49  SDVKLLDSLRSQADDSAALRLFNLASKK--PNFSPEPALYEEILLRLGRSGSFDDMRKIL 106

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVE 132
           + +    C++    FL +   Y +     + + V   M  +FG +P    Y  +L +LV+
Sbjct: 107 EDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVD 166

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            N LKL    +  M   GI+P V++ NVLIKALC+ +  +  A  +  +MP+ G  PD  
Sbjct: 167 GNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCR-AHQLRPAILMLEDMPSYGLVPDEK 225

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           T+ T++ G    G +  A  + ++M    CS + V+   +++G C+   VE+A+   +EM
Sbjct: 226 TFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285

Query: 253 RSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
            ++ G  P+ +T+++L++GLCK G    A+E++ +M+ + + P++ TY+++++GLCK G+
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGE 345

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           ++EAVE LD+M  +   P+   Y  +IS  C   + +EA      +   GI P+  T+  
Sbjct: 346 VKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF-- 403

Query: 372 HIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                N+++QGLC T  +R A +++  MR++    D  TY+ LI   C KG + ++  ++
Sbjct: 404 -----NSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNML 458

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++ L GC     T++ ++       K+R+A E+ 
Sbjct: 459 KQMELSGCARSVITYNTLIDGFCKANKIREAEEIF 493



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/401 (31%), Positives = 212/401 (52%), Gaps = 11/401 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +GF  D  TF+ +++ L  A   + A +++D + +E  D     + S+  G  ++    +
Sbjct: 289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+   D+M    C P   +Y T+++ L +ENQ++ A    R +   GI P V + N LI+
Sbjct: 349 AVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 408

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC  +     A ++F EM ++GC PD +TY  LI+ LC  GK+ EA  + K+ME   C+
Sbjct: 409 GLCL-TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            +V+TY +LI+G C++  + EA  +F+EM   GV  N  TY++L+DGLCK      A +L
Sbjct: 468 RSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQL 527

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  MI +  +P+  TY++LL   C+ G +++A +I+  M   G +PD   YG +IS  C 
Sbjct: 528 MDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSM-RNR 401
            G+ + A+  L  + + GI       +L    +N V+QGL  K     A  ++  M    
Sbjct: 588 AGRVEVASKLLRSIQMKGI-------ALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQN 640

Query: 402 SISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPD 441
             + D+++Y  +    C  G  I ++   + EL+  G +P+
Sbjct: 641 EAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPE 681



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 123/271 (45%), Gaps = 7/271 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I     AN+ R AE++ D +           + ++  G  +  R  DA ++ D+M
Sbjct: 472 TYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQM 531

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G +P   +Y ++L        +K A    + M   G +P + +   LI  LCK +G 
Sbjct: 532 IMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK-AGR 590

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYT 230
           ++ A K+ R +  +G     + Y  +I GL R  K  EA  LF+EM E    +P  V+Y 
Sbjct: 591 VEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYR 650

Query: 231 SLINGLCQSKS-VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            +  GLC     + EA+    E+  KG  P   +   L +GL         ++L+ M++ 
Sbjct: 651 IVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQ 710

Query: 290 K-RHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           K R     V   +++ GL K  K Q+A+  L
Sbjct: 711 KARFSEEEV---SMVKGLLKIRKFQDALATL 738


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  250 bits (639), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 151/423 (35%), Positives = 233/423 (55%), Gaps = 10/423 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D STF+++I  L  A+Q RPA  +L+ +        E  F ++ +GY        A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIK 163
           +R+ ++M EFGC  +  S   ++    +E +++ A  F + M  + G  P   + N L+ 
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +G +  A +I   M   G  PD YTY ++I+GLC+LG++ EA E+  +M T+ CS
Sbjct: 304 GLCK-AGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY +LI+ LC+   VEEA  L   + SKG+ P+V T++SL+ GLC       AMEL
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M SK   P+  TY+ L++ LC +GKL EA+ +L +M+L G       Y  +I  FC 
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             K +EA    DEM + G++ N +T+       NT++ GLCK+     A Q+   M    
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTY-------NTLIDGLCKSRRVEDAAQLMDQMIMEG 535

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              D  TY+SL+T FC+ GDI K+A IV  +  +GC PD  T+  +++ L    ++  A+
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595

Query: 463 ELL 465
           +LL
Sbjct: 596 KLL 598



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 247/455 (54%), Gaps = 13/455 (2%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T  ++L  +R++ D + AL +F+ A+ +    F  + + +  ++ +L  +  F   + +L
Sbjct: 49  TDVKLLDSLRSQPDDSAALRLFNLASKK--PNFSPEPALYEEILLRLGRSGSFDDMKKIL 106

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVE 132
           + +   +C++    FL +   Y +     + + V D M  EFG +P    Y  +L +LV+
Sbjct: 107 EDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVD 166

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            N LKL    +  M   GI+P V++ NVLIKALC+ +  +  A  +  +MP+ G  PD  
Sbjct: 167 GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCR-AHQLRPAILMLEDMPSYGLVPDEK 225

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           T+ T++ G    G +  A  + ++M    CS + V+   +++G C+   VE+A+   +EM
Sbjct: 226 TFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285

Query: 253 RSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
            ++ G  P+ +T+++L++GLCK G    A+E++ +M+ + + P++ TY+++++GLCK G+
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGE 345

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           ++EAVE+LD+M  +   P+   Y  +IS  C   + +EA      +   GI P+  T+  
Sbjct: 346 VKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF-- 403

Query: 372 HIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                N+++QGLC T  +R A +++  MR++    D  TY+ LI   C KG + ++  ++
Sbjct: 404 -----NSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNML 458

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++ L GC     T++ ++       K R+A E+ 
Sbjct: 459 KQMELSGCARSVITYNTLIDGFCKANKTREAEEIF 493



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/401 (31%), Positives = 211/401 (52%), Gaps = 11/401 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +GF  D  TF+ +++ L  A   + A +++D + +E  D     + S+  G  ++    +
Sbjct: 289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V D+M    C P   +Y T+++ L +ENQ++ A    R +   GI P V + N LI+
Sbjct: 349 AVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 408

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC  +     A ++F EM ++GC PD +TY  LI+ LC  GK+ EA  + K+ME   C+
Sbjct: 409 GLCL-TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            +V+TY +LI+G C++    EA  +F+EM   GV  N  TY++L+DGLCK      A +L
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQL 527

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  MI +  +P+  TY++LL   C+ G +++A +I+  M   G +PD   YG +IS  C 
Sbjct: 528 MDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSM-RNR 401
            G+ + A+  L  + + GI       +L    +N V+QGL  K     A  ++  M    
Sbjct: 588 AGRVEVASKLLRSIQMKGI-------NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQN 640

Query: 402 SISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPD 441
               D+++Y  +    C  G  I ++   + EL+  G +P+
Sbjct: 641 EAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPE 681



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 122/271 (45%), Gaps = 7/271 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I     AN+ R AE++ D +           + ++  G  +  R  DA ++ D+M
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G +P   +Y ++L        +K A    + M   G +P + +   LI  LCK +G 
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK-AGR 590

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYT 230
           ++ A K+ R +  +G     + Y  +I GL R  K  EA  LF+EM E     P  V+Y 
Sbjct: 591 VEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYR 650

Query: 231 SLINGLCQSKS-VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            +  GLC     + EA+    E+  KG  P   +   L +GL         ++L+ M++ 
Sbjct: 651 IVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQ 710

Query: 290 K-RHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           K R     V   +++ GL K  K Q+A+  L
Sbjct: 711 KARFSEEEV---SMVKGLLKIRKFQDALATL 738


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/489 (29%), Positives = 263/489 (53%), Gaps = 51/489 (10%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +  + VL+ ++ +++++  L  F SA A  +N F+H  ST+ +MI +L    +    + +
Sbjct: 39  LQESDVLKRLKTDRNLSSVLGFF-SAIAN-SNAFQHTASTYRVMIERLGRECEMDMVQYI 96

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++  +  +  ED+F+ I  GY RV     A+++F ++ EFGC+PT + Y  +L  L+ 
Sbjct: 97  LQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLS 156

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           EN+ ++    Y +M++ G+ P V + N+L+KALCKN   +DAA K+F EM N+GC PD+ 
Sbjct: 157 ENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKND-RVDAAHKLFVEMSNKGCPPDAV 215

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY T+++ LC+ GKI +A+EL    +     P+V  Y +LI+G+C+   +E A++L  EM
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDGMCKEGRIEVAIKLLGEM 270

Query: 253 RSKGVEPNVFTYSSLMDGLCKG----------------GCSS------------------ 278
              GV+PNV +YS +++ LC                  GC +                  
Sbjct: 271 MDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKL 330

Query: 279 -QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A++L ++MI     PN+V Y+TL++GLC  G L+EA+++ D+M+  G  P+   Y  +
Sbjct: 331 YEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSIL 390

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I  F   G    A+   + M+  G  PN +T++  + +       LCK    ++A  +  
Sbjct: 391 IDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV-------LCKNSMFDQANSLVE 443

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M     + +++T+++ I   C  G +  + ++++ +   GCLP+  T++ ++ AL+   
Sbjct: 444 KMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMN 503

Query: 457 KMRQAAELL 465
           K  +A  L 
Sbjct: 504 KYEEAFGLF 512



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 229/447 (51%), Gaps = 14/447 (3%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE 79
            L+ A    NK  +I    T    +G   +  T+++++  L   ++   A  L   ++ +
Sbjct: 149 HLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNK 208

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
            C      + ++     +  +  DA  +  + K     P+   Y  ++  + +E ++++A
Sbjct: 209 GCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDGMCKEGRIEVA 263

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
            +    M + G+ P V S + +I +LC  SG ++ AF +F +M  RGC  + +T+  LI 
Sbjct: 264 IKLLGEMMDNGVDPNVVSYSCIINSLCV-SGNVELAFALFAQMFLRGCDANIHTFTPLIK 322

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           G    GK+YEA +L+K M    C P VV Y +LI+GLC + S+EEA+++ ++M+  G  P
Sbjct: 323 GCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLP 382

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           NV TYS L+DG  K G    A E    MIS   RPN+VTY+ +++ LCK     +A  ++
Sbjct: 383 NVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLV 442

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           ++M L+G  P+   +   I   C  G+ + A   L+ M   G  PN       I  +N +
Sbjct: 443 EKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN-------ITTYNEL 495

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +  L + +    AF ++  +  R++  + +TY++++  F + G + ++ ++  + ++ G 
Sbjct: 496 LDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGT 555

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
            PD  T++ ++ A   + K++ AA+L+
Sbjct: 556 APDSITYNTMIHAYCKQGKVKIAAQLV 582



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 192/411 (46%), Gaps = 41/411 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   +  ++S +I+ L  +     A  L  ++    CD     F  + +G     +  +
Sbjct: 273 NGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYE 332

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ ++  M + GCEP   +Y T++  L     L+ A +    M+  G  P V + ++LI 
Sbjct: 333 ALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILID 392

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
              K SG +  A + +  M + GC P+  TY  +++ LC+     +A  L ++M  + C+
Sbjct: 393 GFAK-SGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  +T+ + I GLC +  VE AM+L E M+  G  PN+ TY+ L+D L +     +A  L
Sbjct: 452 PNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGL 511

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            Q + ++  +PN+VTY+T+L G  + G + EA+++  +  ++G  PD+  Y  +I  +C 
Sbjct: 512 FQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCK 571

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
            GK + AA  ++                        V  + +  P               
Sbjct: 572 QGKVKIAAQLVER-----------------------VSSMKEWHP--------------- 593

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
             D +TY+SLI   C   +I ++   +D+ +  G  P+  TW+A++   +D
Sbjct: 594 --DIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFD 642


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/489 (29%), Positives = 263/489 (53%), Gaps = 51/489 (10%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +  + VL+ ++ +++++  L  F SA A  +N F+H  ST+ +MI +L    +    + +
Sbjct: 39  LQESDVLKRLKTDRNLSSVLGFF-SAIAN-SNAFQHTASTYRVMIERLGRECEMDMVQYI 96

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++  +  +  ED+F+ I  GY RV     A+++F ++ EFGC+PT + Y  +L  L+ 
Sbjct: 97  LQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLS 156

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           EN+ ++    Y +M++ G+ P V + N+L+KALCKN   +DAA K+F EM N+GC PD+ 
Sbjct: 157 ENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKND-RVDAAHKLFVEMSNKGCPPDAV 215

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY T+++ LC+ GKI +A+EL    +     P+V  Y +LI+G+C+   +E A++L  EM
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDGMCKEGRIEVAIKLLGEM 270

Query: 253 RSKGVEPNVFTYSSLMDGLCKG----------------GCSS------------------ 278
              GV+PNV +YS +++ LC                  GC +                  
Sbjct: 271 MDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKL 330

Query: 279 -QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A++L ++MI     PN+V Y+TL++GLC  G L+EA+++ D+M+  G  P+   Y  +
Sbjct: 331 YEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSIL 390

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I  F   G    A+   + M+  G  PN +T++  + +       LCK    ++A  +  
Sbjct: 391 IDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV-------LCKNSMFDQANSLVE 443

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M     + +++T+++ I   C  G +  + ++++ +   GCLP+  T++ ++ AL+   
Sbjct: 444 KMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMN 503

Query: 457 KMRQAAELL 465
           K  +A  L 
Sbjct: 504 KYEEAFGLF 512



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 229/447 (51%), Gaps = 14/447 (3%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE 79
            L+ A    NK  +I    T    +G   +  T+++++  L   ++   A  L   ++ +
Sbjct: 149 HLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNK 208

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
            C      + ++     +  +  DA  +  + K     P+   Y  ++  + +E ++++A
Sbjct: 209 GCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDGMCKEGRIEVA 263

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
            +    M + G+ P V S + +I +LC  SG ++ AF +F +M  RGC  + +T+  LI 
Sbjct: 264 IKLLGEMMDNGVDPNVVSYSCIINSLCV-SGNVELAFALFAQMFLRGCDANIHTFTPLIK 322

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           G    GK+YEA +L+K M    C P VV Y +LI+GLC + S+EEA+++ ++M+  G  P
Sbjct: 323 GCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLP 382

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           NV TYS L+DG  K G    A E    MIS   RPN+VTY+ +++ LCK     +A  ++
Sbjct: 383 NVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLV 442

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           ++M L+G  P+   +   I   C  G+ + A   L+ M   G  PN       I  +N +
Sbjct: 443 EKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN-------ITTYNEL 495

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +  L + +    AF ++  +  R++  + +TY++++  F + G + ++ ++  + ++ G 
Sbjct: 496 LDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGT 555

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
            PD  T++ ++ A   + K++ AA+L+
Sbjct: 556 APDSITYNTMIHAYCKQGKVKIAAQLV 582



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 192/411 (46%), Gaps = 41/411 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   +  ++S +I+ L  +     A  L  ++    CD     F  + +G     +  +
Sbjct: 273 NGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYE 332

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ ++  M + GCEP   +Y T++  L     L+ A +    M+  G  P V + ++LI 
Sbjct: 333 ALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILID 392

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
              K SG +  A + +  M + GC P+  TY  +++ LC+     +A  L ++M  + C+
Sbjct: 393 GFAK-SGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  +T+ + I GLC +  VE AM+L E M+  G  PN+ TY+ L+D L +     +A  L
Sbjct: 452 PNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGL 511

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            Q + ++  +PN+VTY+T+L G  + G + EA+++  +  ++G  PD+  Y  +I  +C 
Sbjct: 512 FQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCK 571

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
            GK + AA  ++                        V  + +  P               
Sbjct: 572 QGKVKIAAQLVER-----------------------VSSMKEWHP--------------- 593

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
             D +TY+SLI   C   +I ++   +D+ +  G  P+  TW+A++   +D
Sbjct: 594 --DIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFD 642


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 143/435 (32%), Positives = 236/435 (54%), Gaps = 19/435 (4%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IF S T      ++  + +F  +I    S+  FR  E++L ++ +E+    E  F+ + +
Sbjct: 47  IFKSGTQ--MGSYKLGDLSFYSLIESHASSLDFRSLEEVLHQMKRERRVFLEKNFIVMFK 104

Query: 94  GYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REI 149
            YG+ H P  A+ +F +M  EF C+ T KS+ +VL ++V+E     A  FY H+   + +
Sbjct: 105 AYGKAHLPEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSL 164

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            I P   + N++IKA+C+  G +D A ++FRE+P R C PD+YTY TL++GLC+  +I E
Sbjct: 165 NIHPNALTFNLVIKAMCR-LGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDE 223

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  L  EM+ +   P +V +  LI+ LC+   +  A +L + M  KG  PN  TY++L+ 
Sbjct: 224 AVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVH 283

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC  G   +A+ LL  M+S +  PN VT+ TL+NG   +G+  +   +L  ++ +G + 
Sbjct: 284 GLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRG 343

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC---KT 386
           +  +Y  +IS  C  GK+ +A     EMV  G  PN + +S        ++ GLC   K 
Sbjct: 344 NEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYS-------ALIDGLCREGKL 396

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           D  R F     M+N+    +S TYSSL+  + + GD HK+  +  E+  + C+ +E  +S
Sbjct: 397 DEARGF--LSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYS 454

Query: 447 AVMTALWDRRKMRQA 461
            ++  L    K  +A
Sbjct: 455 ILINGLCKDGKFMEA 469



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/498 (25%), Positives = 216/498 (43%), Gaps = 75/498 (15%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL +I  E   N+AL  ++   A  +     +  TF+L+I  +        A ++   + 
Sbjct: 138 VLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIP 197

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
              C      + ++  G  +  R  +A+ + D+M+  G  P   ++  +++ L ++  L 
Sbjct: 198 LRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLG 257

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A +   +M   G  P   + N L+  LC   G ++ A  +  +M +  C P+  T+GTL
Sbjct: 258 RAAKLVDNMFLKGCVPNEVTYNALVHGLCL-KGKLEKAVSLLNQMVSNKCVPNDVTFGTL 316

Query: 198 IN-----------------------------------GLCRLGKIYEAKELFKEMETKAC 222
           IN                                   GLC+ GK  +A EL+KEM  K C
Sbjct: 317 INGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGC 376

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  + Y++LI+GLC+   ++EA     EM++KG  PN FTYSSLM G  + G S +A+ 
Sbjct: 377 GPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAIL 436

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M +     N V YS L+NGLCK+GK  EA+ +  +M  +G+K D   Y  +I  FC
Sbjct: 437 VWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFC 496

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           +    ++     ++M+  G                 VVQ                     
Sbjct: 497 NANLVEQGLKLFNQMLCQG----------------PVVQP-------------------- 520

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              D +TY+ L+  FC +  I ++  I++ ++  GC PD  T    +  L +     Q  
Sbjct: 521 ---DVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMNPPQDG 577

Query: 463 ELLLLELMNKCVEAEVDI 480
              L EL+ + V+ +  I
Sbjct: 578 REFLDELVVRLVKRQRTI 595


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 258/485 (53%), Gaps = 37/485 (7%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S+ +  A VL+ ++ E D+  AL  F S     +  F+H   T+ +MI KL S  +    
Sbjct: 38  SSVLKEADVLKRLKHEHDITLALEYFKSIAN--SKSFKHTPLTYQMMIEKLASEREMDCV 95

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           + LL ++  E    +ED+F+S+   Y R      A++ F +M++F  +PT K Y  +L  
Sbjct: 96  QYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDA 155

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L++EN+ ++    Y +M++ G++P V + N+L+KALCKN+  +D A K+  EM ++GC P
Sbjct: 156 LLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNN-RVDGAHKLLVEMSSKGCDP 214

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  +Y TLI+ LC+LGK+ EA+EL       + +P+V  Y +LING+C+  + EEA +L 
Sbjct: 215 DEVSYTTLISSLCKLGKVKEAREL-----AMSFTPSVPVYNALINGVCKEYTFEEAFQLL 269

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM +KG++PNV +Y+++++ L   G    ++ +L  M ++   PN+ T+++L+ G   +
Sbjct: 270 DEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLK 329

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT- 368
           G   EA++  DRM  +G+ P+   Y  ++   C      +A +  ++M + G  PN  T 
Sbjct: 330 GGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTY 389

Query: 369 ---------------------WSLHIRIHNTVVQGLCKTDP-------NRAFQVYLSMRN 400
                                W +    H  VV   C  D        N+A+ +  +M+ 
Sbjct: 390 SALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQV 449

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
            +   +++T+++ I   C  G +  + ++ D++   GC P+  T++ ++ +L   R+  +
Sbjct: 450 ENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGE 509

Query: 461 AAELL 465
           A  L+
Sbjct: 510 AFGLV 514



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 166/333 (49%), Gaps = 1/333 (0%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           +A G   +  TF+ +I           A D  DR+ +E        + ++  G       
Sbjct: 308 FARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSL 367

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            DA+ VF++M+  GC P  ++Y  ++    +   L  A   +  M   G  P V +   +
Sbjct: 368 GDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCM 427

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LC+NS   + A+ +   M    C P++ T+ T I GLC  G++  A ++F +M    
Sbjct: 428 VDVLCRNS-MFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSG 486

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P   TY  L++ L + +   EA  L ++M  +G+E N+ TY++++ G C  G   +A+
Sbjct: 487 CFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEAL 546

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ELL  M+ +  +P+ +T + +++  CK+GK+  A++++DR+      PD   Y  +IS  
Sbjct: 547 ELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGI 606

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           C     +EA  +L  M+  GI+PN  TW++ +R
Sbjct: 607 CTHIGVEEAIVYLRRMLSEGISPNVATWNVLVR 639



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 190/426 (44%), Gaps = 9/426 (2%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           E A  F      ++ +I+ +     F  A  LLD +  +  D     + +I         
Sbjct: 237 ELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGN 296

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              ++ V  KM   GC P   ++ +++     +     A  F+  M   G+ P V + N 
Sbjct: 297 VELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNA 356

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+  LC      DA   +F +M   GC P+  TY  LI+G  + G +  A E++  M T 
Sbjct: 357 LMHGLCSKRSLGDAV-SVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITH 415

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C P VV YT +++ LC++    +A  L E M+ +   PN  T+++ + GLC  G    A
Sbjct: 416 GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWA 475

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +++   M +    PN  TY+ LL+ L K+ +  EA  ++  M+ +G++ +   Y  II  
Sbjct: 476 IKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYG 535

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           +C  G   EA   L +MV+ G  P+ +T        N V+   CK    N A Q+   + 
Sbjct: 536 YCCAGMLGEALELLGKMVVRGTKPDAITV-------NIVIDAYCKQGKVNIAIQLMDRLS 588

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
                 D + Y+SLI+  C    + ++   +  ++ +G  P+  TW+ ++  L+      
Sbjct: 589 AGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHS 648

Query: 460 QAAELL 465
            A + L
Sbjct: 649 GAVQFL 654



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 206/442 (46%), Gaps = 43/442 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE----DIFLSICRGYGRVH 99
           +G   +  T+++++  L   N+   A  LL  ++ + CD  E     +  S+C+  G+V 
Sbjct: 175 DGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCK-LGKVK 233

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
              +    F         P+   Y  ++  + +E   + AF+    M   GI P V S  
Sbjct: 234 EARELAMSF--------TPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYT 285

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I AL  ++G ++ +  +  +M  RGC+P+ +T+ +LI G    G  +EA + +  M  
Sbjct: 286 TIINAL-SDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIR 344

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +   P VV Y +L++GLC  +S+ +A+ +F +M   G  PNV TYS+L+DG  K G    
Sbjct: 345 EGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDG 404

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A E+   MI+    PN+V Y+ +++ LC+     +A  +++ M+++   P+   +   I 
Sbjct: 405 ASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIK 464

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWS----------------------------L 371
             C  G+   A    D+M   G  PN  T++                            L
Sbjct: 465 GLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIEL 524

Query: 372 HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
           ++  +NT++ G C       A ++   M  R    D++T + +I  +CK+G ++ + +++
Sbjct: 525 NLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLM 584

Query: 431 DELVLDGCLPDEGTWSAVMTAL 452
           D L      PD   ++++++ +
Sbjct: 585 DRLSAGKWHPDIIAYTSLISGI 606



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 157/312 (50%), Gaps = 3/312 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ ++  L S      A  + +++    C      + ++  GY +      A  V++ M
Sbjct: 353 AYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWM 412

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P   +Y  ++ +L   +    A+    +M+     P   + N  IK LC  SG 
Sbjct: 413 ITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLC-GSGR 471

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A K+F +M N GC P++ TY  L++ L +  +  EA  L K+ME +     +VTY +
Sbjct: 472 VDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNT 531

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I G C +  + EA+ L  +M  +G +P+  T + ++D  CK G  + A++L+  + + +
Sbjct: 532 IIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGK 591

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII-SCFCDIGKYQEA 350
             P+I+ Y++L++G+C    ++EA+  L RM  +G+ P+   +  ++   F ++G +  A
Sbjct: 592 WHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMG-HSGA 650

Query: 351 ANFLDEMVLGGI 362
             FLD ++  G 
Sbjct: 651 VQFLDAVLGSGF 662



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 16/182 (8%)

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S +H P  +TY  ++  L  E ++     +L +MKL+G+     L+  +I  +   G  +
Sbjct: 71  SFKHTP--LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSE 128

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ----VYLSMRNRSIS 404
           +A      M    + P        ++I+N ++  L   D NR FQ    +Y +M+   + 
Sbjct: 129 QALKTFYRMQDFRVKPT-------VKIYNHILDAL--LDENR-FQMINPIYSNMKKDGME 178

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            +  TY+ L+   CK   +  + +++ E+   GC PDE +++ ++++L    K+++A EL
Sbjct: 179 PNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL 238

Query: 465 LL 466
            +
Sbjct: 239 AM 240


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 258/485 (53%), Gaps = 37/485 (7%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S+ +  A VL+ ++ E D+  AL  F S     +  F+H   T+ +MI KL S  +    
Sbjct: 38  SSVLKEADVLKRLKHEHDITLALEYFKSIAN--SKSFKHTPLTYQMMIEKLASEREMDCV 95

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           + LL ++  E    +ED+F+S+   Y R      A++ F +M++F  +PT K Y  +L  
Sbjct: 96  QYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDA 155

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L++EN+ ++    Y +M++ G++P V + N+L+KALCKN+  +D A K+  EM ++GC P
Sbjct: 156 LLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNN-RVDGAHKLLVEMSSKGCDP 214

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  +Y TLI+ LC+LGK+ EA+EL       + +P+V  Y +LING+C+  + EEA +L 
Sbjct: 215 DEVSYTTLISSLCKLGKVKEAREL-----AMSFTPSVPVYNALINGVCKEYTFEEAFQLL 269

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM +KG++PNV +Y+++++ L   G    ++ +L  M ++   PN+ T+++L+ G   +
Sbjct: 270 DEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLK 329

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT- 368
           G   EA++  DRM  +G+ P+   Y  ++   C      +A +  ++M + G  PN  T 
Sbjct: 330 GGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTY 389

Query: 369 ---------------------WSLHIRIHNTVVQGLCKTDP-------NRAFQVYLSMRN 400
                                W +    H  VV   C  D        N+A+ +  +M+ 
Sbjct: 390 SALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQV 449

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
            +   +++T+++ I   C  G +  + ++ D++   GC P+  T++ ++ +L   R+  +
Sbjct: 450 ENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGE 509

Query: 461 AAELL 465
           A  L+
Sbjct: 510 AFGLV 514



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 166/333 (49%), Gaps = 1/333 (0%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           +A G   +  TF+ +I           A D  DR+ +E        + ++  G       
Sbjct: 308 FARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSL 367

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            DA+ VF++M+  GC P  ++Y  ++    +   L  A   +  M   G  P V +   +
Sbjct: 368 GDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCM 427

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LC+NS   + A+ +   M    C P++ T+ T I GLC  G++  A ++F +M    
Sbjct: 428 VDVLCRNS-MFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSG 486

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P   TY  L++ L + +   EA  L ++M  +G+E N+ TY++++ G C  G   +A+
Sbjct: 487 CFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEAL 546

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ELL  M+ +  +P+ +T + +++  CK+GK+  A++++DR+      PD   Y  +IS  
Sbjct: 547 ELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGI 606

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           C     +EA  +L  M+  GI+PN  TW++ +R
Sbjct: 607 CTHIGVEEAIVYLRRMLSEGISPNVATWNVLVR 639



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 190/426 (44%), Gaps = 9/426 (2%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           E A  F      ++ +I+ +     F  A  LLD +  +  D     + +I         
Sbjct: 237 ELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGN 296

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              ++ V  KM   GC P   ++ +++     +     A  F+  M   G+ P V + N 
Sbjct: 297 VELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNA 356

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+  LC      DA   +F +M   GC P+  TY  LI+G  + G +  A E++  M T 
Sbjct: 357 LMHGLCSKRSLGDAV-SVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITH 415

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C P VV YT +++ LC++    +A  L E M+ +   PN  T+++ + GLC  G    A
Sbjct: 416 GCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWA 475

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +++   M +    PN  TY+ LL+ L K+ +  EA  ++  M+ +G++ +   Y  II  
Sbjct: 476 IKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYG 535

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           +C  G   EA   L +MV+ G  P+ +T        N V+   CK    N A Q+   + 
Sbjct: 536 YCCAGMLGEALELLGKMVVRGTKPDAITV-------NIVIDAYCKQGKVNIAIQLMDRLS 588

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
                 D + Y+SLI+  C    + ++   +  ++ +G  P+  TW+ ++  L+      
Sbjct: 589 AGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHS 648

Query: 460 QAAELL 465
            A + L
Sbjct: 649 GAVQFL 654



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 209/451 (46%), Gaps = 43/451 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE----DIFLSICRGYGRVH 99
           +G   +  T+++++  L   N+   A  LL  ++ + CD  E     +  S+C+  G+V 
Sbjct: 175 DGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCK-LGKVK 233

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
              +    F         P+   Y  ++  + +E   + AF+    M   GI P V S  
Sbjct: 234 EARELAMSF--------TPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYT 285

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I AL  ++G ++ +  +  +M  RGC+P+ +T+ +LI G    G  +EA + +  M  
Sbjct: 286 TIINAL-SDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIR 344

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +   P VV Y +L++GLC  +S+ +A+ +F +M   G  PNV TYS+L+DG  K G    
Sbjct: 345 EGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDG 404

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A E+   MI+    PN+V Y+ +++ LC+     +A  +++ M+++   P+   +   I 
Sbjct: 405 ASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIK 464

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWS----------------------------L 371
             C  G+   A    D+M   G  PN  T++                            L
Sbjct: 465 GLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIEL 524

Query: 372 HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
           ++  +NT++ G C       A ++   M  R    D++T + +I  +CK+G ++ + +++
Sbjct: 525 NLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLM 584

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           D L      PD   ++++++ +     + +A
Sbjct: 585 DRLSAGKWHPDIIAYTSLISGICTHIGVEEA 615



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 154/305 (50%), Gaps = 3/305 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ ++  L S      A  + +++    C      + ++  GY +      A  V++ M
Sbjct: 353 AYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWM 412

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P   +Y  ++ +L   +    A+    +M+     P   + N  IK LC  SG 
Sbjct: 413 ITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLC-GSGR 471

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A K+F +M N GC P++ TY  L++ L +  +  EA  L K+ME +     +VTY +
Sbjct: 472 VDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNT 531

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I G C +  + EA+ L  +M  +G +P+  T + ++D  CK G  + A++L+  + + +
Sbjct: 532 IIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGK 591

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII-SCFCDIGKYQEA 350
             P+I+ Y++L++G+C    ++EA+  L RM  +G+ P+   +  ++   F ++G +  A
Sbjct: 592 WHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMG-HSGA 650

Query: 351 ANFLD 355
             FLD
Sbjct: 651 VQFLD 655



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 16/182 (8%)

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S +H P  +TY  ++  L  E ++     +L +MKL+G+     L+  +I  +   G  +
Sbjct: 71  SFKHTP--LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSE 128

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ----VYLSMRNRSIS 404
           +A      M    + P        ++I+N ++  L   D NR FQ    +Y +M+   + 
Sbjct: 129 QALKTFYRMQDFRVKPT-------VKIYNHILDAL--LDENR-FQMINPIYSNMKKDGME 178

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            +  TY+ L+   CK   +  + +++ E+   GC PDE +++ ++++L    K+++A EL
Sbjct: 179 PNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL 238

Query: 465 LL 466
            +
Sbjct: 239 AM 240


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  248 bits (633), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/484 (29%), Positives = 252/484 (52%), Gaps = 41/484 (8%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +  ++VL  ++ E ++  AL  F S     +N F+H   T++ MI +L         + L
Sbjct: 38  LKESEVLNKLKNEPNILLALHFFKSIAN--SNSFKHTPLTYTTMIKRLGYERDIDGIQYL 95

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L  +  E     ED+F+ +   Y R      A++ F ++ EFGC+P+ K Y  VL  L+ 
Sbjct: 96  LQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLS 155

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           EN+ ++    Y +M+  GI+  V + N+L+KALCKN   +DAA K+  EM  +GC PD+ 
Sbjct: 156 ENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKND-RVDAARKLLAEMSYKGCIPDAV 214

Query: 193 TYGTLINGLCRLGKIYEAK------------------------------ELFKEMETKAC 222
           +Y T+++ +CRLGK+ EA+                              ELF EM  +  
Sbjct: 215 SYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGI 274

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V+TY+++IN L +  +VE A+ +  +M  +G  PNV T++SLM G   GG   +A++
Sbjct: 275 DPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALD 334

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   MI +   PN V Y+TL++GLC  GK+ EAV +  +M+  G+ P+   Y  +I  F 
Sbjct: 335 LWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFA 394

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G    A+   ++M+  G  PN       + ++  +V  LC+    N A  +  +M N 
Sbjct: 395 KAGDLVGASEIWNKMITNGCLPN-------VVVYTCMVDVLCRNSMFNHALHLIENMANG 447

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +   +++T+++ I   C  G    + ++++++   GC P+  T++ V+  L++ ++ R+A
Sbjct: 448 NCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREA 507

Query: 462 AELL 465
            +++
Sbjct: 508 LQIV 511



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 179/354 (50%), Gaps = 10/354 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V  KM   GC P   ++ +++       +L  A   +  M + G +P   + N LI 
Sbjct: 297 ALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIH 356

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC + G M  A  + ++M   G  P+  TY TLI+G  + G +  A E++ +M T  C 
Sbjct: 357 GLC-SYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCL 415

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VV YT +++ LC++     A+ L E M +    PN  T+++ + GLC  G +  AM++
Sbjct: 416 PNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKV 475

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M      PN+ TY+ +L+GL    + +EA++I+  ++   +K +   Y  I+S FC 
Sbjct: 476 LNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCH 535

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G ++ A     ++++GG  P+ +T+       NTV+   CK  +   A Q+   +  + 
Sbjct: 536 AGMFKGALQIAGKLLVGGTKPDSITY-------NTVIYAYCKQGEVKTAIQLVDRLTKKG 588

Query: 403 ISV-DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
               D  TY+SL+   C    + ++   +D+++ +G  P+  TW+A++  L+ +
Sbjct: 589 EGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGLFSK 642



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 169/357 (47%), Gaps = 14/357 (3%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           TP +Y T++  L  E  +       + M+  GI  C   L V++    + +G  + A K 
Sbjct: 72  TPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGIS-CNEDLFVIVINAYRRAGLAEQALKT 130

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           F  +   GC P    Y  +++ L    K      ++  M+       V TY  L+  LC+
Sbjct: 131 FYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCK 190

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +  V+ A +L  EM  KG  P+  +Y++++  +C+ G   +A EL     S R +  +  
Sbjct: 191 NDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEAREL-----SMRIKSFVPV 245

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y+ L+NG C+E K++E  E+ + M ++G+ PD   Y  +I+   ++G  + A   L +M 
Sbjct: 246 YNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMF 305

Query: 359 LGGITPNRLTWSLHIRIHNTVVQG-LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
           L G +PN  T++  ++ +   + G LC+     A  ++  M       +++ Y++LI   
Sbjct: 306 LRGCSPNVHTFTSLMKGY--FMGGRLCE-----ALDLWNRMIQEGSEPNTVAYNTLIHGL 358

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           C  G + ++  +  ++  +G  P+E T+S ++        +  A+E+    + N C+
Sbjct: 359 CSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCL 415



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 132/318 (41%), Gaps = 37/318 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +   ++ +I  L S  +   A  +  ++ +      E  + ++  G+ +    + A
Sbjct: 343 GSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGA 402

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +++KM   GC P    Y  ++ +L   +    A     +M      P   + N  IK 
Sbjct: 403 SEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKG 462

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC  SG  + A K+  +M   GC P+  TY  +++GL    +  EA ++  E+E      
Sbjct: 463 LCC-SGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKS 521

Query: 225 TVVTYTSLINGLCQSK-----------------------------------SVEEAMRLF 249
            +VTY ++++G C +                                     V+ A++L 
Sbjct: 522 NLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLV 581

Query: 250 EEMRSKGVE-PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           + +  KG   P+VFTY+SL+ G+C      +A+  L  MI++   PN  T++ L+ GL  
Sbjct: 582 DRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGLFS 641

Query: 309 EGKLQEAVEILDRMKLQG 326
           +      + I+D +   G
Sbjct: 642 KLGHLGPIHIVDNILANG 659



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 127/281 (45%), Gaps = 18/281 (6%)

Query: 197 LINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           ++N L     I  A   FK +  + +   T +TYT++I  L   + ++    L + M+ +
Sbjct: 43  VLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLE 102

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G+  N   +  +++   + G + QA++    +     +P++  Y+ +L+ L  E K Q  
Sbjct: 103 GISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMI 162

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
             I + MK  G++ +   Y  ++   C   +   A   L EM   G  P+ ++++     
Sbjct: 163 NGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYT----- 217

Query: 376 HNTVVQGLC---KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
             TVV  +C   K +  R     LSMR +S       Y++LI  FC++  + +   + +E
Sbjct: 218 --TVVSSMCRLGKVEEARE----LSMRIKSFVP---VYNALINGFCREHKMEEVFELFNE 268

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           + ++G  PD  T+S V+  L +   +  A  +L    +  C
Sbjct: 269 MAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGC 309



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 3/196 (1%)

Query: 43  ANGFRHDNS-TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           ANG    N+ TF+  I  L  + +   A  +L+++ +  C      +  +  G     R 
Sbjct: 445 ANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRT 504

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A+++  +++E   +    +Y T+L+        K A +    +   G +P   + N +
Sbjct: 505 REALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTV 564

Query: 162 IKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           I A CK  G +  A ++   +  +G   PD +TY +L+ G+C    + EA     +M  +
Sbjct: 565 IYAYCK-QGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINE 623

Query: 221 ACSPTVVTYTSLINGL 236
              P   T+ +L+ GL
Sbjct: 624 GICPNRATWNALVRGL 639


>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
 gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 245/440 (55%), Gaps = 12/440 (2%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W  +++  +V+ +I  +++++ AL IFD A  ++   F H+  T+  MI KL  A  F P
Sbjct: 95  WPQRLSPKRVVSMISRQQNLDLALQIFDHA-GKFHRNFAHNYETYLAMIEKLSKARAFEP 153

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
            E L+ +++K +    E++F+++ R YG   RP  A+R F ++  FG +P+ +S+ T+L 
Sbjct: 154 METLISQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLN 213

Query: 129 ILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            LV+  +  L    +++ R+  GI P V + N+L+KALCK +  +DAA ++  EMP  G 
Sbjct: 214 TLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKN-DIDAAIRVLEEMPAMGF 272

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            P+  TY T++ G    G +  A+ +F E+  +   P   TYT L++G C+     +A++
Sbjct: 273 IPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVK 332

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           + +EM    VEPN  TY  +++  CK   S + + LL  M+ K++ P+      +++ LC
Sbjct: 333 VMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLC 392

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           +EGK++ A E+  ++  +   PD  +   +I   C  GK  EA    DE   G I P+ L
Sbjct: 393 EEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSI-PSTL 451

Query: 368 TWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+       N ++ G+C+  +   A +++ +M  +    ++ TY+ LI  FCK G+  + 
Sbjct: 452 TY-------NALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREG 504

Query: 427 ARIVDELVLDGCLPDEGTWS 446
            R+++E++ +GCLP++ T++
Sbjct: 505 IRVMEEMLDNGCLPNKATYA 524


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  248 bits (632), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 145/432 (33%), Positives = 238/432 (55%), Gaps = 14/432 (3%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IF SA+      ++  +STF  +I    ++  F     + DR+ +E+    E  F+ + R
Sbjct: 66  IFKSASQ--MGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFR 123

Query: 94  GYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYR--HMREIG 150
            YG+ H P  A+ +F +M  EF C  T +S+ +VL ++++E     A  FY      +  
Sbjct: 124 AYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTN 183

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I P V S N++IKA+CK  G +D A ++FREM  + C PD +TY TL++GLC+  +I EA
Sbjct: 184 ISPNVLSFNLVIKAMCK-LGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 242

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             L  EM+ + C P+ VT+  LINGLC+   +    +L + M  KG  PN  TY+++++G
Sbjct: 243 VLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIING 302

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC  G   +A+ LL  M++ +  PN VTY TL+NGL K+G+  + V +L  ++ +G   +
Sbjct: 303 LCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHAN 362

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              Y  +IS      K +EA     +MV  G  PN       I +++ ++ GLC+    +
Sbjct: 363 EYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPN-------IVVYSALIDGLCREGKLD 415

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A ++   M N+  + ++ TYSSLI  F K G+  K+ R+  E+  + C+P+E  +S ++
Sbjct: 416 EAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLI 475

Query: 450 TALWDRRKMRQA 461
             L +  K+R+A
Sbjct: 476 HGLCEDGKLREA 487



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 185/365 (50%), Gaps = 11/365 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ VF +M    CEP   +Y T++  L +E+++  A      M+  G  P   + NVLI 
Sbjct: 207 AIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLIN 266

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G M    K+   M  +GC P+  TY T+INGLC  GK+ +A  L   M    C 
Sbjct: 267 GLCKK-GDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCV 325

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY +LINGL +     + + L   +  +G   N + YS+L+ GL K   S +AM L
Sbjct: 326 PNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGL 385

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M+ K  +PNIV YS L++GLC+EGKL EA EIL  M  +G  P+A  Y  +I  F  
Sbjct: 386 WKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFK 445

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
            G  Q+A     EM      PN + +S+       ++ GLC+    R A  ++  M  R 
Sbjct: 446 TGNSQKAIRVWKEMAKNNCVPNEICYSV-------LIHGLCEDGKLREAMMMWTHMLGRG 498

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVL--DGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  D + YSS+I   C  G +    ++ +E++       PD  T++ ++ AL  +  +  
Sbjct: 499 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISH 558

Query: 461 AAELL 465
           A +LL
Sbjct: 559 AIDLL 563



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 169/365 (46%), Gaps = 59/365 (16%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           +  G   +  T++ +I+ L    +   A  LLDR+   KC   +  + ++  G  +  R 
Sbjct: 285 FLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRS 344

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           +D + +   ++E G      +Y T+++ L +E + + A   ++ M E G QP +   + L
Sbjct: 345 VDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSAL 404

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI----------------------- 198
           I  LC+  G +D A +I  EM N+GCTP+++TY +LI                       
Sbjct: 405 IDGLCR-EGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNN 463

Query: 199 ------------NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
                       +GLC  GK+ EA  ++  M  +   P VV Y+S+I+GLC + SVE  +
Sbjct: 464 CVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGL 523

Query: 247 RLFEEM--RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           +LF EM  +    +P+V TY+ L+  LCK    S A++LL  M+ +   P+++T +  LN
Sbjct: 524 KLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLN 583

Query: 305 G---------------------LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
                                 L K  ++  A +I++ M  + L P+A  + +II   C 
Sbjct: 584 ALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCK 643

Query: 344 IGKYQ 348
             K Q
Sbjct: 644 PKKVQ 648



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 119/258 (46%), Gaps = 17/258 (6%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF---TYSSLMDGLCKGGCSSQAMELL 284
           T+ SLI     S       ++F+ M+    E  VF    +  +     K     +A+EL 
Sbjct: 82  TFYSLIENYANSGDFGTLFQVFDRMKR---ERRVFIEKNFILVFRAYGKAHLPEKAIELF 138

Query: 285 QMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILD--RMKLQGLKPDAGLYGKIISCF 341
             M+ +   R  + +++++LN + +EG    A+E  +        + P+   +  +I   
Sbjct: 139 GRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAM 198

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C +G    A     EM +    P+  T+        T++ GLCK D  + A  +   M+ 
Sbjct: 199 CKLGLVDRAIEVFREMAIQKCEPDVFTYC-------TLMDGLCKEDRIDEAVLLLDEMQI 251

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
                 S+T++ LI   CKKGD+ +  ++VD + L GC+P+E T++ ++  L  + K+ +
Sbjct: 252 EGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDK 311

Query: 461 AAELLLLELMNKCVEAEV 478
           A  LL   + +KCV  +V
Sbjct: 312 AVSLLDRMVASKCVPNDV 329


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  248 bits (632), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 145/432 (33%), Positives = 238/432 (55%), Gaps = 14/432 (3%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IF SA+      ++  +STF  +I    ++  F     + DR+ +E+    E  F+ + R
Sbjct: 50  IFKSASQ--MGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFR 107

Query: 94  GYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYR--HMREIG 150
            YG+ H P  A+ +F +M  EF C  T +S+ +VL ++++E     A  FY      +  
Sbjct: 108 AYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTN 167

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I P V S N++IKA+CK  G +D A ++FREM  + C PD +TY TL++GLC+  +I EA
Sbjct: 168 ISPNVLSFNLVIKAMCK-LGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 226

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             L  EM+ + C P+ VT+  LINGLC+   +    +L + M  KG  PN  TY+++++G
Sbjct: 227 VLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIING 286

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC  G   +A+ LL  M++ +  PN VTY TL+NGL K+G+  + V +L  ++ +G   +
Sbjct: 287 LCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHAN 346

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              Y  +IS      K +EA     +MV  G  PN       I +++ ++ GLC+    +
Sbjct: 347 EYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPN-------IVVYSALIDGLCREGKLD 399

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A ++   M N+  + ++ TYSSLI  F K G+  K+ R+  E+  + C+P+E  +S ++
Sbjct: 400 EAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLI 459

Query: 450 TALWDRRKMRQA 461
             L +  K+R+A
Sbjct: 460 HGLCEDGKLREA 471



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 185/365 (50%), Gaps = 11/365 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ VF +M    CEP   +Y T++  L +E+++  A      M+  G  P   + NVLI 
Sbjct: 191 AIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLIN 250

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G M    K+   M  +GC P+  TY T+INGLC  GK+ +A  L   M    C 
Sbjct: 251 GLCK-KGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCV 309

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY +LINGL +     + + L   +  +G   N + YS+L+ GL K   S +AM L
Sbjct: 310 PNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGL 369

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M+ K  +PNIV YS L++GLC+EGKL EA EIL  M  +G  P+A  Y  +I  F  
Sbjct: 370 WKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFK 429

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
            G  Q+A     EM      PN + +S+       ++ GLC+    R A  ++  M  R 
Sbjct: 430 TGNSQKAIRVWKEMAKNNCVPNEICYSV-------LIHGLCEDGKLREAMMMWTHMLGRG 482

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVL--DGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  D + YSS+I   C  G +    ++ +E++       PD  T++ ++ AL  +  +  
Sbjct: 483 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISH 542

Query: 461 AAELL 465
           A +LL
Sbjct: 543 AIDLL 547



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 169/365 (46%), Gaps = 59/365 (16%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           +  G   +  T++ +I+ L    +   A  LLDR+   KC   +  + ++  G  +  R 
Sbjct: 269 FLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRS 328

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           +D + +   ++E G      +Y T+++ L +E + + A   ++ M E G QP +   + L
Sbjct: 329 VDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSAL 388

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI----------------------- 198
           I  LC+  G +D A +I  EM N+GCTP+++TY +LI                       
Sbjct: 389 IDGLCR-EGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNN 447

Query: 199 ------------NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
                       +GLC  GK+ EA  ++  M  +   P VV Y+S+I+GLC + SVE  +
Sbjct: 448 CVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGL 507

Query: 247 RLFEEM--RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           +LF EM  +    +P+V TY+ L+  LCK    S A++LL  M+ +   P+++T +  LN
Sbjct: 508 KLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLN 567

Query: 305 G---------------------LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
                                 L K  ++  A +I++ M  + L P+A  + +II   C 
Sbjct: 568 ALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCK 627

Query: 344 IGKYQ 348
             K Q
Sbjct: 628 PKKVQ 632



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 119/258 (46%), Gaps = 17/258 (6%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF---TYSSLMDGLCKGGCSSQAMELL 284
           T+ SLI     S       ++F+ M+    E  VF    +  +     K     +A+EL 
Sbjct: 66  TFYSLIENYANSGDFGTLFQVFDRMKR---ERRVFIEKNFILVFRAYGKAHLPEKAIELF 122

Query: 285 QMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILD--RMKLQGLKPDAGLYGKIISCF 341
             M+ +   R  + +++++LN + +EG    A+E  +        + P+   +  +I   
Sbjct: 123 GRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAM 182

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C +G    A     EM +    P+  T+        T++ GLCK D  + A  +   M+ 
Sbjct: 183 CKLGLVDRAIEVFREMAIQKCEPDVFTYC-------TLMDGLCKEDRIDEAVLLLDEMQI 235

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
                 S+T++ LI   CKKGD+ +  ++VD + L GC+P+E T++ ++  L  + K+ +
Sbjct: 236 EGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDK 295

Query: 461 AAELLLLELMNKCVEAEV 478
           A  LL   + +KCV  +V
Sbjct: 296 AVSLLDRMVASKCVPNDV 313


>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 245/440 (55%), Gaps = 12/440 (2%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W  +++  +V+ +I  +++++ AL IFD A  ++   F H+  T+  MI KL  A  F P
Sbjct: 95  WPQRLSPKRVVSMISRQQNLDLALQIFDHA-GKFHRNFAHNYETYLAMIEKLSKARAFEP 153

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
            E L+ +++K +    E++F+++ R YG   RP  A+R F ++  FG +P+ +S+ T+L 
Sbjct: 154 METLISQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLN 213

Query: 129 ILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            LV+  +  L    +++ R+  GI P V + N+L+KALCK +  +DAA ++  EMP  G 
Sbjct: 214 TLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKN-DIDAAIRVLEEMPAMGF 272

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            P+  TY T++ G    G +  A+ +F E+  +   P   TYT L++G C+     +A++
Sbjct: 273 IPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVK 332

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           + +EM    VEPN  TY  +++  CK   S + + LL  M+ K++ P+      +++ LC
Sbjct: 333 VMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLC 392

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           +EGK++ A E+  ++  +   PD  +   +I   C  GK  EA    DE   G I P+ L
Sbjct: 393 EEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSI-PSTL 451

Query: 368 TWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+       N ++ G+C+  +   A +++ +M  +    ++ TY+ LI  FCK G+  + 
Sbjct: 452 TY-------NALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREG 504

Query: 427 ARIVDELVLDGCLPDEGTWS 446
            R+++E++ +GCLP++ T++
Sbjct: 505 IRVMEEMLDNGCLPNKATYA 524


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/479 (30%), Positives = 248/479 (51%), Gaps = 33/479 (6%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
            V  +IR + D   AL +F+    E  +GF+H   T+  MI KL    +F   ED+L  +
Sbjct: 9   HVAAVIRYQNDPLNALKMFNQVKTE--DGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEM 66

Query: 77  NKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
            K     + E +++ I R YGR  +  +A+ VF++M  + CEP+ +SY  ++ ILVE   
Sbjct: 67  RKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGY 126

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
              A + Y  M++IGI P V +  + +K+ C  +G   AA ++   MP +GC  ++ +Y 
Sbjct: 127 FSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCI-TGRPTAALRLLNNMPGQGCEFNAVSYC 185

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            +I+G  +     EA  LF EM  +   P ++T+  LI+ LC+  +V+E+ +LF ++  +
Sbjct: 186 AVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR 245

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           GV PN+FT++  + GLC+ G   +A  LL+ ++S+   P++++Y+TL+ G CK  KL EA
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR- 374
              L +M   G++P+   Y  II+ FC  G  Q A   L + +  G  P+  T+S  I  
Sbjct: 306 ECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLING 365

Query: 375 ---------------------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVD 406
                                      ++NT+V+GL K     +A Q+   M     S D
Sbjct: 366 LCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             TY+ ++   CK G +  +  I+++ +  GC+PD  T++ ++     +R M +A E+L
Sbjct: 426 IWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL 484



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 213/428 (49%), Gaps = 19/428 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR--GYGRVHRPLDAMRVFD 109
           +++ +++ LV    F  A  +  R+  +   I  D++    R   +    RP  A+R+ +
Sbjct: 113 SYNAIMNILVEYGYFSQAHKVYMRM--KDIGIYPDVYTHTIRMKSFCITGRPTAALRLLN 170

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
            M   GCE    SY  V++   +EN    A+  +  M + GI P + + N LI  LCK  
Sbjct: 171 NMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCK-K 229

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  + K+F ++  RG  P+ +T+   I GLCR G I EA  L + + ++  +P V++Y
Sbjct: 230 GNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISY 289

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            +LI G C+   + EA     +M + GVEPN FTY+++++G CK G    A ++L+  + 
Sbjct: 290 NTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMF 349

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   P+  TYS+L+NGLC +G +  A+ +      +G K    LY  ++      G   +
Sbjct: 350 KGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQ 409

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISV 405
           A   + +M+  G +P+  T++L       VV GLCK    +D N      ++   +    
Sbjct: 410 ALQLMKDMMEHGCSPDIWTYNL-------VVNGLCKMGCLSDANGILNDAIA---KGCIP 459

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D  T+++LI  +CK+ ++ K+  I+D ++  G  PD  T++ ++  L   RK+    +  
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519

Query: 466 LLELMNKC 473
              L   C
Sbjct: 520 KAMLEKGC 527



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 199/401 (49%), Gaps = 12/401 (2%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +A  +FD    +   G   D  TF+ +I  L      + +E L  +V K         F 
Sbjct: 199 EAYHLFDEMLKQ---GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFN 255

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
              +G  R     +A R+ + +   G  P   SY T++    + ++L  A  +   M   
Sbjct: 256 IFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G++P   + N +I   CK +G M  A KI R+   +G  PD +TY +LINGLC  G +  
Sbjct: 316 GVEPNEFTYNTIINGFCK-AGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNR 374

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  +F E   K    +++ Y +L+ GL +   V +A++L ++M   G  P+++TY+ +++
Sbjct: 375 AMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVN 434

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLCK GC S A  +L   I+K   P+I T++TL++G CK+  + +A+EILD M   G+ P
Sbjct: 435 GLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITP 494

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
           D   Y  +++  C   K     +    M+  G TPN +T+       N +++  CK    
Sbjct: 495 DVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITY-------NILIESFCKDRKV 547

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
           + A +++  M+ R ++ D +T  +LI   C  G++ K+  +
Sbjct: 548 SEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYEL 588



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 219/453 (48%), Gaps = 11/453 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++A  + +S  +E   G   D  +++ +I      ++   AE  L ++     +  E  
Sbjct: 267 IDEAARLLESIVSE---GLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFT 323

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + +I  G+ +     +A ++       G  P   +Y +++  L  +  +  A   +    
Sbjct: 324 YNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM 383

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G +  +   N L+K L K  G +  A ++ ++M   GC+PD +TY  ++NGLC++G +
Sbjct: 384 EKGFKHSIILYNTLVKGLSK-QGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCL 442

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  +  +   K C P + T+ +LI+G C+ +++++A+ + + M S G+ P+V TY++L
Sbjct: 443 SDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTL 502

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++GLCK       ++  + M+ K   PNI+TY+ L+   CK+ K+ EA+E+   MK +GL
Sbjct: 503 LNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL 562

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KT 386
            PD      +I   C  G+  +A      +           +S    I N ++   C K 
Sbjct: 563 TPDIVTLCTLICGLCSNGELDKAYELFVTI------EKEYKFSYSTAIFNIMINAFCEKL 616

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           + + A +++  M     + D+ TY  +I  +CK G+I  +   + E +  G +P   T  
Sbjct: 617 NVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCG 676

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEVD 479
            V+  L    ++ +A  ++ L + N  V  EV+
Sbjct: 677 KVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVN 709



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 211/434 (48%), Gaps = 22/434 (5%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHR 100
           +G   +  T++ +I+    A   + A+ +L     +     E  + S+  G    G ++R
Sbjct: 315 SGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNR 374

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              AM VF +  E G + +   Y T++  L ++  +  A +  + M E G  P + + N+
Sbjct: 375 ---AMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++  LCK  G +  A  I  +   +GC PD +T+ TLI+G C+   + +A E+   M + 
Sbjct: 432 VVNGLCK-MGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +P V+TY +L+NGLC+++ ++  +  F+ M  KG  PN+ TY+ L++  CK    S+A
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLYGKIIS 339
           MEL + M ++   P+IVT  TL+ GLC  G+L +A E+   + K         ++  +I+
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMIN 610

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSM 398
            FC+      A     +M      P+  T+ +       ++   CKT + + A    L  
Sbjct: 611 AFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRV-------MIDSYCKTGNIDLAHTFLLEN 663

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
            ++ +     T   ++ C C    + ++  I++ +V +G +P+E      + ++++  K 
Sbjct: 664 ISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEE------VNSIFEADKK 717

Query: 459 RQAAELLLLELMNK 472
             AA  +++E + K
Sbjct: 718 EVAAPKIVVEYLLK 731


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/479 (30%), Positives = 248/479 (51%), Gaps = 33/479 (6%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
            V  +IR + D   AL +F+    E  +GF+H   T+  MI KL    +F   ED+L  +
Sbjct: 9   HVAAVIRYQNDPLNALKMFNQVKTE--DGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEM 66

Query: 77  NKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
            K     + E +++ I R YGR  +  +A+ VF++M  + CEP+ +SY  ++ ILVE   
Sbjct: 67  RKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGY 126

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
              A + Y  M++IGI P V +  + +K+ C  +G   AA ++   MP +GC  ++ +Y 
Sbjct: 127 FSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCI-TGRPTAALRLLNNMPGQGCEFNAVSYC 185

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            +I+G  +     EA  LF EM  +   P ++T+  LI+ LC+  +V+E+ +LF ++  +
Sbjct: 186 AVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR 245

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           GV PN+FT++  + GLC+ G   +A  LL+ ++S+   P++++Y+TL+ G CK  KL EA
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEA 305

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR- 374
              L +M   G++P+   Y  II+ FC  G  Q A   L + +  G  P+  T+S  I  
Sbjct: 306 ECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLING 365

Query: 375 ---------------------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVD 406
                                      ++NT+V+GL K     +A Q+   M     S D
Sbjct: 366 LCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             TY+ ++   CK G +  +  I+++ +  GC+PD  T++ ++     +R M +A E+L
Sbjct: 426 IWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL 484



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 213/428 (49%), Gaps = 19/428 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR--GYGRVHRPLDAMRVFD 109
           +++ +++ LV    F  A  +  R+  +   I  D++    R   +    RP  A+R+ +
Sbjct: 113 SYNAIMNILVEYGYFSQAHKVYMRM--KDIGIYPDVYTHTIRMKSFCITGRPTAALRLLN 170

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
            M   GCE    SY  V++   +EN    A+  +  M + GI P + + N LI  LCK  
Sbjct: 171 NMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCK-K 229

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  + K+F ++  RG  P+ +T+   I GLCR G I EA  L + + ++  +P V++Y
Sbjct: 230 GNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISY 289

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            +LI G C+   + EA     +M + GVEPN FTY+++++G CK G    A ++L+  + 
Sbjct: 290 NTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMF 349

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   P+  TYS+L+NGLC +G +  A+ +      +G K    LY  ++      G   +
Sbjct: 350 KGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQ 409

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISV 405
           A   + +M+  G +P+   W+     +N VV GLCK    +D N      ++   +    
Sbjct: 410 ALQLMKDMMEHGCSPD--IWT-----YNLVVNGLCKMGCLSDANGILNDAIA---KGCIP 459

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D  T+++LI  +CK+ ++ K+  I+D ++  G  PD  T++ ++  L   RK+    +  
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519

Query: 466 LLELMNKC 473
              L   C
Sbjct: 520 KAMLEKGC 527



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 199/401 (49%), Gaps = 12/401 (2%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +A  +FD    +   G   D  TF+ +I  L      + +E L  +V K         F 
Sbjct: 199 EAYHLFDEMLKQ---GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFN 255

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
              +G  R     +A R+ + +   G  P   SY T++    + ++L  A  +   M   
Sbjct: 256 IFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G++P   + N +I   CK +G M  A KI R+   +G  PD +TY +LINGLC  G +  
Sbjct: 316 GVEPNEFTYNTIINGFCK-AGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNR 374

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  +F E   K    +++ Y +L+ GL +   V +A++L ++M   G  P+++TY+ +++
Sbjct: 375 AMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVN 434

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLCK GC S A  +L   I+K   P+I T++TL++G CK+  + +A+EILD M   G+ P
Sbjct: 435 GLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITP 494

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
           D   Y  +++  C   K     +    M+  G TPN +T+       N +++  CK    
Sbjct: 495 DVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITY-------NILIESFCKDRKV 547

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
           + A +++  M+ R ++ D +T  +LI   C  G++ K+  +
Sbjct: 548 SEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYEL 588



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 219/453 (48%), Gaps = 11/453 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++A  + +S  +E   G   D  +++ +I      ++   AE  L ++     +  E  
Sbjct: 267 IDEAARLLESIVSE---GLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFT 323

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + +I  G+ +     +A ++       G  P   +Y +++  L  +  +  A   +    
Sbjct: 324 YNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM 383

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G +  +   N L+K L K  G +  A ++ ++M   GC+PD +TY  ++NGLC++G +
Sbjct: 384 EKGFKHSIILYNTLVKGLSK-QGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCL 442

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  +  +   K C P + T+ +LI+G C+ +++++A+ + + M S G+ P+V TY++L
Sbjct: 443 SDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTL 502

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++GLCK       ++  + M+ K   PNI+TY+ L+   CK+ K+ EA+E+   MK +GL
Sbjct: 503 LNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL 562

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KT 386
            PD      +I   C  G+  +A      +           +S    I N ++   C K 
Sbjct: 563 TPDIVTLCTLICGLCSNGELDKAYELFVTI------EKEYKFSYSTAIFNIMINAFCXKL 616

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           + + A +++  M     + D+ TY  +I  +CK G+I  +   + E +  G +P   T  
Sbjct: 617 NVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCG 676

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEVD 479
            V+  L    ++ +A  ++ L + N  V  EV+
Sbjct: 677 KVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVN 709


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/442 (35%), Positives = 240/442 (54%), Gaps = 12/442 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D NK  ++  + +   + G R D STF+++I  L  A+Q RPA  L++ +        E 
Sbjct: 172 DGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEK 231

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            F +I +G+        AMRV ++M E GC  T  +   ++    +E +++ A RF   M
Sbjct: 232 TFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEM 291

Query: 147 --REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
             RE G  P   + N+L+  L K +G +  A ++   M   G  PD YTY +LI+GLC+L
Sbjct: 292 SLRE-GFFPDKYTFNMLVNGLSK-TGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKL 349

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G++ EA ++  +M  + CSP  VTY ++I+ LC+   VEEA +L   +  KG+ P+V TY
Sbjct: 350 GEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTY 409

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +SL+ GLC     + AMEL + M +K   P+  TY+ L++ LC  GKLQEA+ +L  M++
Sbjct: 410 NSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEV 469

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G   +   Y  +I  FC   +  EA    D+M L G++ N +T+       NT++ GLC
Sbjct: 470 SGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTY-------NTLIDGLC 522

Query: 385 KTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K++    A Q+   M    +  D  TY+SL+T FCK GDI K+A IV  +  DGC PD  
Sbjct: 523 KSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIV 582

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           T+  ++  L    ++  A +LL
Sbjct: 583 TYGTLIAGLCKAGRVEAATKLL 604



 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/411 (30%), Positives = 225/411 (54%), Gaps = 10/411 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  TF+++++ L      + A +++D + +E  D     + S+  G  ++    +A
Sbjct: 296 GFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEA 355

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           ++V ++M E  C P   +Y T+++ L +ENQ++ A +    +   GI P V + N LI+ 
Sbjct: 356 VKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQG 415

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC  S     A ++++EM  +GC PD +TY  LI+ LC  GK+ EA  L KEME   C+ 
Sbjct: 416 LCL-SRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCAR 474

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V+TY +LI+G C++K + EA  +F++M  +GV  N  TY++L+DGLCK     +A +L+
Sbjct: 475 NVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLM 534

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             MI +  RP+  TY++LL   CK G +++A +I+  M   G +PD   YG +I+  C  
Sbjct: 535 DQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKA 594

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSI 403
           G+ + A   L  + + GI       +L    +N V+Q L +   ++ A +++  M  ++ 
Sbjct: 595 GRVEAATKLLRTIQMKGI-------NLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAE 647

Query: 404 SVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           + D++TY  +    C+ G  I ++   V E++  G +P+  ++  +   L+
Sbjct: 648 APDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLF 698



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 70/163 (42%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  T++ +++    A   + A D++  +  + C+     + ++  G  +  R   A
Sbjct: 541 GLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAA 600

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++   ++  G   TP +Y  V+  L    + K A R +R M E    P   +  ++ + 
Sbjct: 601 TKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRG 660

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           LC+  G +  A     EM  RG  P+  ++  L  GL  L  +
Sbjct: 661 LCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSLAMV 703


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 140/421 (33%), Positives = 232/421 (55%), Gaps = 13/421 (3%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           ++  ++TF  +I    ++ +F     +LDR+ +E   +TE IF+ I +  G+ H P +A+
Sbjct: 61  YKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAV 120

Query: 106 RVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REIGIQPCVASLNVL 161
             F +M  +  C+ T KS+ +VL ++++E     AF+FY H+      G QP + + N++
Sbjct: 121 NFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLI 180

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IKALCK  G +D A   FREMP + C PD +TY TL+NGLC+  ++ EA  L  EM+ + 
Sbjct: 181 IKALCK-LGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEG 239

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P  VT+  LI+ L ++  +  A +L + M  KG  PN  TY++L+ GLC  G   +A+
Sbjct: 240 CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAL 299

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ M+S +  PN VTY T++NGL K+ + ++ V IL  M+ +G K +  +Y  +IS  
Sbjct: 300 SLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGL 359

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
              GK + A     EM   G  PN       + ++   + GLC+ + P+ A  +   M +
Sbjct: 360 FKEGKSENAVRLWKEMAEKGCKPN-------VVVYGAFIDGLCRDEKPDEAEDILQEMLS 412

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +    ++ TYSSL+  F KKGD  K+  +  E++      +    S ++  L +  ++R+
Sbjct: 413 KGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLRE 472

Query: 461 A 461
           A
Sbjct: 473 A 473



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 144/505 (28%), Positives = 224/505 (44%), Gaps = 67/505 (13%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL +I  E D + A   +       + GF+ +  T++L+I  L    Q   A D    + 
Sbjct: 142 VLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMP 201

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
            + C+     + ++  G  +  R  +A+ + D+M+  GC P P ++  ++  L +   L 
Sbjct: 202 LKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLS 261

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A +   +M   G  P   + N LI  LC   G +D A  +  +M +  C P+  TYGT+
Sbjct: 262 RAAKLVDNMFLKGCVPNEVTYNTLIHGLCL-KGKLDKALSLLEKMVSSKCVPNQVTYGTI 320

Query: 198 INGLCRL-----------------------------------GKIYEAKELFKEMETKAC 222
           INGL +                                    GK   A  L+KEM  K C
Sbjct: 321 INGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGC 380

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y + I+GLC+ +  +EA  + +EM SKG  PN FTYSSLM G  K G S +A+ 
Sbjct: 381 KPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAIL 440

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M+S+  R N+V  S LLNGLC+ G+L+EA+ +   M  +GLKPD   Y  +I   C
Sbjct: 441 VWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLC 500

Query: 343 DIGKYQEAANFLDEMVL--GGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           D+G   +      EM        P+ +T+       N +   LC+ D   RA  +  SM 
Sbjct: 501 DVGSVDKGLKLFYEMQCQEPKSRPDVVTY-------NILFNALCRQDNLTRAIDLLNSML 553

Query: 400 NRSISVDSLT---------------------YSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +     DSLT                        L+    K+     + RIV+E++L   
Sbjct: 554 DEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERKLSALRIVEEMLLRFL 613

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAE 463
            P+  TWS V+      +++R+  +
Sbjct: 614 PPEPSTWSRVIQRTCKPKRIRETID 638



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 130/307 (42%), Gaps = 46/307 (14%)

Query: 177 KIFREMPNRGCTP-DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           +IF+  P  G       T+  LI       + +   ++   M+ +    T   +  +   
Sbjct: 50  QIFKSRPQFGSYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKA 109

Query: 236 LCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI---SKR 291
             ++    EA+  F  M +    +  V +++S+++ + + G  S A +    +    SK 
Sbjct: 110 CGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKG 169

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +PN++TY+ ++  LCK G++  AV+    M L+   PD   Y  +++  C   +  EA 
Sbjct: 170 FQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAV 229

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
             LDEM   G  PN                                          +T++
Sbjct: 230 FLLDEMQAEGCLPN-----------------------------------------PVTFN 248

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            LI    K GD+ ++A++VD + L GC+P+E T++ ++  L  + K+ +A  LL   + +
Sbjct: 249 VLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS 308

Query: 472 KCVEAEV 478
           KCV  +V
Sbjct: 309 KCVPNQV 315


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 140/421 (33%), Positives = 232/421 (55%), Gaps = 13/421 (3%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           ++  ++TF  +I    ++ +F     +LDR+ +E   +TE IF+ I +  G+ H P +A+
Sbjct: 85  YKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAV 144

Query: 106 RVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REIGIQPCVASLNVL 161
             F +M  +  C+ T KS+ +VL ++++E     AF+FY H+      G QP + + N++
Sbjct: 145 NFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLI 204

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IKALCK  G +D A   FREMP + C PD +TY TL+NGLC+  ++ EA  L  EM+ + 
Sbjct: 205 IKALCK-LGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEG 263

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P  VT+  LI+ L ++  +  A +L + M  KG  PN  TY++L+ GLC  G   +A+
Sbjct: 264 CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAL 323

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ M+S +  PN VTY T++NGL K+ + ++ V IL  M+ +G K +  +Y  +IS  
Sbjct: 324 SLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGL 383

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
              GK + A     EM   G  PN       + ++   + GLC+ + P+ A  +   M +
Sbjct: 384 FKEGKSENAVRLWKEMAEKGCKPN-------VVVYGAFIDGLCRDEKPDEAEDILQEMLS 436

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +    ++ TYSSL+  F KKGD  K+  +  E++      +    S ++  L +  ++R+
Sbjct: 437 KGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLRE 496

Query: 461 A 461
           A
Sbjct: 497 A 497



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 144/505 (28%), Positives = 224/505 (44%), Gaps = 67/505 (13%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL +I  E D + A   +       + GF+ +  T++L+I  L    Q   A D    + 
Sbjct: 166 VLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMP 225

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
            + C+     + ++  G  +  R  +A+ + D+M+  GC P P ++  ++  L +   L 
Sbjct: 226 LKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLS 285

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A +   +M   G  P   + N LI  LC   G +D A  +  +M +  C P+  TYGT+
Sbjct: 286 RAAKLVDNMFLKGCVPNEVTYNTLIHGLCL-KGKLDKALSLLEKMVSSKCVPNQVTYGTI 344

Query: 198 INGLCRL-----------------------------------GKIYEAKELFKEMETKAC 222
           INGL +                                    GK   A  L+KEM  K C
Sbjct: 345 INGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGC 404

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y + I+GLC+ +  +EA  + +EM SKG  PN FTYSSLM G  K G S +A+ 
Sbjct: 405 KPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAIL 464

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M+S+  R N+V  S LLNGLC+ G+L+EA+ +   M  +GLKPD   Y  +I   C
Sbjct: 465 VWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLC 524

Query: 343 DIGKYQEAANFLDEMVL--GGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           D+G   +      EM        P+ +T+       N +   LC+ D   RA  +  SM 
Sbjct: 525 DVGSVDKGLKLFYEMQCQEPKSRPDVVTY-------NILFNALCRQDNLTRAIDLLNSML 577

Query: 400 NRSISVDSLT---------------------YSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +     DSLT                        L+    K+     + RIV+E++L   
Sbjct: 578 DEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERKLSALRIVEEMLLRFL 637

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAE 463
            P+  TWS V+      +++R+  +
Sbjct: 638 PPEPSTWSRVIQRTCKPKRIRETID 662



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 130/307 (42%), Gaps = 46/307 (14%)

Query: 177 KIFREMPNRGCTP-DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           +IF+  P  G       T+  LI       + +   ++   M+ +    T   +  +   
Sbjct: 74  QIFKSRPQFGSYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKA 133

Query: 236 LCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI---SKR 291
             ++    EA+  F  M +    +  V +++S+++ + + G  S A +    +    SK 
Sbjct: 134 CGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKG 193

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +PN++TY+ ++  LCK G++  AV+    M L+   PD   Y  +++  C   +  EA 
Sbjct: 194 FQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAV 253

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
             LDEM   G  PN                                          +T++
Sbjct: 254 FLLDEMQAEGCLPN-----------------------------------------PVTFN 272

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            LI    K GD+ ++A++VD + L GC+P+E T++ ++  L  + K+ +A  LL   + +
Sbjct: 273 VLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS 332

Query: 472 KCVEAEV 478
           KCV  +V
Sbjct: 333 KCVPNQV 339


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 218/389 (56%), Gaps = 9/389 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + RG+  V      +  F +M+  GC P   +Y T++    +  ++  AF   + M   G
Sbjct: 220 LIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKG 279

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           +QP + S NV+I  LC+  G+M  A++I  EM  +G TPD  TY TL+NG C+ G  ++A
Sbjct: 280 MQPNLISYNVIINGLCR-EGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQA 338

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             +  EM     SP+VVTYT+LIN +C+++++  AM  F++MR +G+ PN  TY++L+DG
Sbjct: 339 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 398

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
             + G  ++A  +L  M      P++VTY+  ++G C   +++EA+ ++  M  +GL PD
Sbjct: 399 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 458

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              Y  IIS FC  G+   A     EMV  G++P+ +T+S       +++QGLC+     
Sbjct: 459 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS-------SLIQGLCEMRRLT 511

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  +   M +  +  D  TY++LI  +C +GD++K+  + DE++  G LPD  T+S ++
Sbjct: 512 EACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLI 571

Query: 450 TALWDRRKMRQAAELLLLELMNKCVEAEV 478
             L  + + R+A  LL   +  + V ++V
Sbjct: 572 NGLNKQARTREAKRLLFKLIYEESVPSDV 600



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 187/352 (53%), Gaps = 44/352 (12%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMD-AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
           G  P V S N ++ A+ ++ G++  +A +++REM     +P+ YTY  LI G C +G++ 
Sbjct: 172 GFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQ 231

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +    F EME   C P VVTY +LI+  C+   ++EA  L + M SKG++PN+ +Y+ ++
Sbjct: 232 KGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVII 291

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV------------ 316
           +GLC+ G   +A E+L+ M  K   P+ VTY+TLLNG CKEG   +A+            
Sbjct: 292 NGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVS 351

Query: 317 -----------------------EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
                                  E  D+M+++GL+P+   Y  +I  F   G   EA   
Sbjct: 352 PSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRI 411

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
           L+EM   G +P+ +T+       N  + G C  +    A  V   M  + ++ D ++YS+
Sbjct: 412 LNEMTESGFSPSVVTY-------NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 464

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +I+ FC+KG++ ++ ++  E+V  G  PD  T+S+++  L + R++ +A +L
Sbjct: 465 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDL 516



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 216/432 (50%), Gaps = 10/432 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G + +  +++++I+ L      + A ++L+ +  +     E  + ++  GY +     
Sbjct: 277 SKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFH 336

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+ +  +M   G  P+  +Y  ++  + +   L  A  F+  MR  G++P   +   LI
Sbjct: 337 QALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLI 396

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               +  G ++ A++I  EM   G +P   TY   I+G C L ++ EA  + +EM  K  
Sbjct: 397 DGFSRQ-GLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 455

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P VV+Y+++I+G C+   ++ A ++ +EM  KGV P+  TYSSL+ GLC+    ++A +
Sbjct: 456 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 515

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L Q M+     P+  TY+TL+N  C EG L +A+ + D M  +G  PDA  Y  +I+   
Sbjct: 516 LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLN 575

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTW--------SLHIRIHNTVVQGLC-KTDPNRAFQ 393
              + +EA   L +++     P+ +T+        ++  +    +++G C K   + A +
Sbjct: 576 KQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADR 635

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           V+ SM  R+       Y+ +I   C+ G++ K+  +  E++  G +P   T   ++ AL+
Sbjct: 636 VFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALF 695

Query: 454 DRRKMRQAAELL 465
                 + +E++
Sbjct: 696 KEGMNEEMSEVI 707



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 201/435 (46%), Gaps = 27/435 (6%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E + ++ALVI         NG      T++ +I+ +  A     A +  D++        
Sbjct: 332 EGNFHQALVIHAEMVR---NGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 388

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           E  + ++  G+ R     +A R+ ++M E G  P+  +Y   +       +++ A    +
Sbjct: 389 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQ 448

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E G+ P V S + +I   C+  G +D AF++ +EM  +G +PD+ TY +LI GLC +
Sbjct: 449 EMVEKGLAPDVVSYSTIISGFCRK-GELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEM 507

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            ++ EA +L +EM      P   TYT+LIN  C    + +A+ L +EM  KG  P+  TY
Sbjct: 508 RRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTY 567

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL---------------NGLCKE 309
           S L++GL K   + +A  LL  +I +   P+ VTY TL+                G C +
Sbjct: 568 SVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMK 627

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G + EA  + + M  +  KP   +Y  II   C  G   +A N   EM+  G  P+ +T 
Sbjct: 628 GLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTV 687

Query: 370 SLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSS-LITCFCKKGDIHKSAR 428
                   T+++ L K   N      +    RS  ++    +  L+    K+G++     
Sbjct: 688 I-------TLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLN 740

Query: 429 IVDELVLDGCLPDEG 443
           ++ ++  DG LP+ G
Sbjct: 741 VLTDMAKDGLLPNSG 755



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN- 389
           + ++  ++  +  +    +A N ++     G  P  L++       N+V+  + ++  + 
Sbjct: 142 SAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSY-------NSVLDAIVRSRGSV 194

Query: 390 --RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
              A +VY  M    +S +  TY+ LI  FC  G++ K      E+  +GCLP+  T++ 
Sbjct: 195 KLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNT 254

Query: 448 VMTALWDRRKMRQAAELL 465
           ++ A     ++ +A  LL
Sbjct: 255 LIDAYCKMGRIDEAFGLL 272


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/421 (33%), Positives = 232/421 (55%), Gaps = 13/421 (3%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F+  +STF  +I     ++ F   E +L+R+  E    +E  F  + + YG+ H P  A+
Sbjct: 68  FKVGDSTFYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKAYGKAHLPNKAI 127

Query: 106 RVFDKMK-EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REIGIQPCVASLNVL 161
            +F +M  EF C+PT KS+ +VL ++++      A  FY H+   +++ I P V S N++
Sbjct: 128 ELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLI 187

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IK++CK  G +D A ++FREMP R C PD+YTY TL++GLC++ +I EA  L  EM+ + 
Sbjct: 188 IKSMCK-LGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEG 246

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P+  T+  LINGLC+        +L + M  KG  PN  TY++L+ GLC  G   +A+
Sbjct: 247 CFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAL 306

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL  M+S +  PN VTY T++NGL K+G+  +   +L  M+ +G   +  +Y  ++S  
Sbjct: 307 SLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGL 366

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
              GK +EA     E +  G   N + +S        +V GLC+   P+ A ++   M +
Sbjct: 367 FKEGKSEEAMRLFKESMDKGCKLNTVLYS-------ALVDGLCRDRKPDEAMKILSEMTD 419

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  + ++ T+SSL+  F + G+ HK+  +  ++    C  +E  +S ++  L    K+ +
Sbjct: 420 KGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVME 479

Query: 461 A 461
           A
Sbjct: 480 A 480



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 198/421 (47%), Gaps = 43/421 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +F+L+I  +        A +L   +   KC      + ++  G  +V R  +A+ + D+M
Sbjct: 183 SFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEM 242

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  GC P+P ++  ++  L ++       +   +M   G  P   + N LI  LC   G 
Sbjct: 243 QIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL-KGK 301

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK---------------------IY-- 208
           +D A  +   M +  C P+  TYGT+INGL + G+                     +Y  
Sbjct: 302 LDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSV 361

Query: 209 ------------EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
                       EA  LFKE   K C    V Y++L++GLC+ +  +EAM++  EM  KG
Sbjct: 362 LVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKG 421

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
             PN FT+SSLM G  + G S +A+E+ + M       N V YS L++GLCK+GK+ EA+
Sbjct: 422 CAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAM 481

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            +  +M   G +PD   Y  +I   CD G  +EA    +EM+   + P+       +  +
Sbjct: 482 MVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLC--LEPDS---QPDVITY 536

Query: 377 NTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD-IHKSARIVDELV 434
           N +   LCK +  +RA  +  SM +R    D +T +  +    +K D     A+ +DELV
Sbjct: 537 NILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREKLDPPQDGAKFLDELV 596

Query: 435 L 435
           +
Sbjct: 597 V 597



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 136/296 (45%), Gaps = 24/296 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  +   +S+++S L    +   A  L      + C +   ++ ++  G  R  +P +A
Sbjct: 351 GYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEA 410

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M++  +M + GC P   ++ +++    E      A   ++ M +I         +VLI  
Sbjct: 411 MKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHG 470

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKAC 222
           LCK+   M+A   ++ +M   GC PD   Y ++I GLC  G + EA +L+ EM       
Sbjct: 471 LCKDGKVMEAMM-VWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDS 529

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM-----------DG- 270
            P V+TY  L N LC+  S+  A+ L   M  +G +P++ T +  +           DG 
Sbjct: 530 QPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREKLDPPQDGA 589

Query: 271 ---------LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
                    L K   +  A +++++M+ K   P   T++ +++ LC+  K+Q  ++
Sbjct: 590 KFLDELVVRLLKRQRNLGASKIVEVMLQKFLSPKASTWARVVHELCQPKKIQAVID 645



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 119/259 (45%), Gaps = 18/259 (6%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS---LMDGLCKGGCSSQAMELL 284
           T+ SLI     S       ++   MR   +E  VF+  S   +     K    ++A+EL 
Sbjct: 74  TFYSLIENYAYSSDFNSLEKVLNRMR---LENRVFSEKSFFVMFKAYGKAHLPNKAIELF 130

Query: 285 QMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRM---KLQGLKPDAGLYGKIISC 340
             M  + + +P + +++++LN + + G    A+E  + +   K   + P+   +  II  
Sbjct: 131 YRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKS 190

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
            C +G    A     EM +    P+  T+        T++ GLCK D  + A  +   M+
Sbjct: 191 MCKLGLVDNAIELFREMPVRKCVPDAYTYC-------TLMDGLCKVDRIDEAVSLLDEMQ 243

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
                    T++ LI   CKKGD  +  ++VD + L GC+P+E T++ ++  L  + K+ 
Sbjct: 244 IEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD 303

Query: 460 QAAELLLLELMNKCVEAEV 478
           +A  LL   + +KCV  EV
Sbjct: 304 KALSLLDRMVSSKCVPNEV 322


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 218/389 (56%), Gaps = 9/389 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + RG+  V      +  F +M+  GC P   +Y T++    +  ++  AF   + M   G
Sbjct: 16  LIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKG 75

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           +QP + S NV+I  LC+  G+M  A++I  EM  +G TPD  TY TL+NG C+ G  ++A
Sbjct: 76  MQPNLISYNVIINGLCR-EGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQA 134

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             +  EM     SP+VVTYT+LIN +C+++++  AM  F++MR +G+ PN  TY++L+DG
Sbjct: 135 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 194

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
             + G  ++A  +L  M      P++VTY+  ++G C   +++EA+ ++  M  +GL PD
Sbjct: 195 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 254

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              Y  IIS FC  G+   A     EMV  G++P+ +T+S       +++QGLC+     
Sbjct: 255 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS-------SLIQGLCEMRRLT 307

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  +   M +  +  D  TY++LI  +C +GD++K+  + DE++  G LPD  T+S ++
Sbjct: 308 EACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLI 367

Query: 450 TALWDRRKMRQAAELLLLELMNKCVEAEV 478
             L  + + R+A  LL   +  + V ++V
Sbjct: 368 NGLNKQARTREAKRLLFKLIYEESVPSDV 396



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 165/313 (52%), Gaps = 43/313 (13%)

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           +P+ YTY  LI G C +G++ +    F EME   C P VVTY +LI+  C+   ++EA  
Sbjct: 7   SPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFG 66

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L + M SKG++PN+ +Y+ +++GLC+ G   +A E+L+ M  K   P+ VTY+TLLNG C
Sbjct: 67  LLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC 126

Query: 308 KEG-----------------------------------KLQEAVEILDRMKLQGLKPDAG 332
           KEG                                    L  A+E  D+M+++GL+P+  
Sbjct: 127 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 186

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            Y  +I  F   G   EA   L+EM   G +P+ +T+       N  + G C  +    A
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY-------NAFIHGHCVLERMEEA 239

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             V   M  + ++ D ++YS++I+ FC+KG++ ++ ++  E+V  G  PD  T+S+++  
Sbjct: 240 LGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQG 299

Query: 452 LWDRRKMRQAAEL 464
           L + R++ +A +L
Sbjct: 300 LCEMRRLTEACDL 312



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 212/423 (50%), Gaps = 10/423 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +++++I+ L      + A ++L+ +  +     E  + ++  GY +      A+ +  +M
Sbjct: 82  SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 141

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P+  +Y  ++  + +   L  A  F+  MR  G++P   +   LI    +  G 
Sbjct: 142 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR-QGL 200

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A++I  EM   G +P   TY   I+G C L ++ EA  + +EM  K  +P VV+Y++
Sbjct: 201 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 260

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+   ++ A ++ +EM  KGV P+  TYSSL+ GLC+    ++A +L Q M+   
Sbjct: 261 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 320

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+  TY+TL+N  C EG L +A+ + D M  +G  PDA  Y  +I+      + +EA 
Sbjct: 321 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 380

Query: 352 NFLDEMVLGGITPNRLTW--------SLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
             L +++     P+ +T+        ++  +    +++G C K   + A +V+ SM  R+
Sbjct: 381 RLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERN 440

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
                  Y+ +I   C+ G++ K+  +  E++  G +P   T   ++ AL+      + +
Sbjct: 441 HKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMS 500

Query: 463 ELL 465
           E++
Sbjct: 501 EVI 503



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 157/368 (42%), Gaps = 54/368 (14%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           ++T   +L     E + ++ALVI         NG      T++ +I+ +  A     A +
Sbjct: 115 EVTYNTLLNGYCKEGNFHQALVIHAEMVR---NGVSPSVVTYTALINSMCKARNLNRAME 171

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
             D++        E  + ++  G+ R     +A R+ ++M E G  P+  +Y   +    
Sbjct: 172 FFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHC 231

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              +++ A    + M E G+ P V S + +I   C+  G +D AF++ +EM  +G +PD+
Sbjct: 232 VLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCR-KGELDRAFQMKQEMVEKGVSPDA 290

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY +LI GLC + ++ EA +L +EM      P   TYT+LIN  C    + +A+ L +E
Sbjct: 291 VTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDE 350

Query: 252 MRSKGVEPNVFTYSSLMDGL---------------------------------------- 271
           M  KG  P+  TYS L++GL                                        
Sbjct: 351 MIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEF 410

Query: 272 ----------CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
                     C  G   +A  + + M+ + H+P    Y+ +++G C+ G L +A  +   
Sbjct: 411 KSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKE 470

Query: 322 MKLQGLKP 329
           M   G  P
Sbjct: 471 MIHSGFVP 478



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 44/246 (17%)

Query: 252 MRSKGVEPNVF-----------------------------------TYSSLMDGLCKGGC 276
           +RS+ V PNV+                                   TY++L+D  CK G 
Sbjct: 2   IRSR-VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A  LL+ M SK  +PN+++Y+ ++NGLC+EG ++EA EIL+ M  +G  PD   Y  
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395
           +++ +C  G + +A     EMV  G++P+ +T++        ++  +CK  + NRA + +
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYT-------ALINSMCKARNLNRAMEFF 173

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             MR R +  +  TY++LI  F ++G ++++ RI++E+   G  P   T++A +      
Sbjct: 174 DQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVL 233

Query: 456 RKMRQA 461
            +M +A
Sbjct: 234 ERMEEA 239



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 8/180 (4%)

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           MI  R  PN+ TY+ L+ G C  G+LQ+ +     M+  G  P+   Y  +I  +C +G+
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
             EA   L  M   G+ PN +++       N ++ GLC+      A+++   M  +  + 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISY-------NVIINGLCREGSMKEAWEILEEMGYKGFTP 113

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D +TY++L+  +CK+G+ H++  I  E+V +G  P   T++A++ ++   R + +A E  
Sbjct: 114 DEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFF 173


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 127/364 (34%), Positives = 208/364 (57%), Gaps = 9/364 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            +R F++M+   C P   +Y TV+    +  ++  AF+  R M   G++P + + N++I 
Sbjct: 222 GLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVIN 281

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC+  G ++    +  EM  +G  PD  TY TL+NG C++G  ++A  L  EM      
Sbjct: 282 GLCR-VGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLP 340

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTYTSLIN +C++ ++  AM  F++M  +G+ PN  TY+SL++G  + G   +A  +
Sbjct: 341 PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI     P IVTY+ LLNG C  G+++EA+ +L  M+ +GL PD   Y  II+ FC 
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             +   A     EMV  G++P+ +T+S       +++QGLC+    N A  ++  M N+S
Sbjct: 461 YQELDRAFQMNAEMVEKGVSPDAITYS-------SLIQGLCEQRRLNEACDLFQEMLNKS 513

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D  TY+SLI  +CK+GD++++  + DE++  G LPD  T++ ++  L  + + R+A 
Sbjct: 514 LLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAK 573

Query: 463 ELLL 466
            LLL
Sbjct: 574 RLLL 577



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 235/464 (50%), Gaps = 14/464 (3%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K +++A  +  S   E   G   +  T++++I+ L    +      +L  ++++      
Sbjct: 252 KRIDEAFKLLRSMGLE---GLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDG 308

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + ++  GY +V     A+ +  +M   G  P   +Y +++  + +   L  A  F+  
Sbjct: 309 VTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQ 368

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   G++P   +   LI    +  G MD A++I+ EM   G  P   TY  L+NG C  G
Sbjct: 369 MHVRGLRPNGVTYTSLINGFSQ-KGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSG 427

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ EA  L + ME K  SP VV+Y+++I G C+ + ++ A ++  EM  KGV P+  TYS
Sbjct: 428 RMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYS 487

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           SL+ GLC+    ++A +L Q M++K   P+  TY++L+NG CKEG L EA+ + D M  +
Sbjct: 488 SLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKK 547

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAAN-----FLDEMVLGGITPNRLTWS---LHIRIHN 377
           G  PD   Y  +I+      + +EA       F DE +  GIT + L  S   +  +   
Sbjct: 548 GFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVV 607

Query: 378 TVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            +++G C K   N A QV+ SM  R+   +   Y+ +I   C+ G++HK+ ++  E+V  
Sbjct: 608 ALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDF 667

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
           G +P   T  A++ AL+    M +   L++ +++  C  ++ ++
Sbjct: 668 GFIPHTVTIIALVKALYS-EGMDEQLNLVIRDILRSCKLSDAEL 710


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 252/457 (55%), Gaps = 13/457 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+    + LI+ EKD   AL IF+  + +  NGF+H+N+T++ ++ KL   N F   + +
Sbjct: 91  ISHDSAIDLIKREKDPQHALNIFNMVSEQ--NGFQHNNATYATILDKLARCNNFHAVDRV 148

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE-PTPKSYITVLAILV 131
           L ++  E C   E IF+++ + + +       +  +  ++    E P+PK+  T L +L+
Sbjct: 149 LHQMTYETCKFHEGIFVNLMKHFSKSSLHEKLLHAYFSIQPIVREKPSPKALSTCLNLLL 208

Query: 132 EENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT-P 189
           + N++ LA +   H  R++  +P V   N+L+K  CKN G +D+AF+I  EM N   + P
Sbjct: 209 DSNRVDLARKLLLHAKRDLTRKPNVCVFNILVKYHCKN-GDLDSAFEIVEEMRNSEFSYP 267

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           +  TY TL++GLCR G++ EA +LF+EM ++    P  +TY  LING C+    + A  +
Sbjct: 268 NLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNV 327

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            + M+S G  PNV+ YS+L+DGLCK G    A  +L  +     +P+ VTY++L+N LC+
Sbjct: 328 IQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCR 387

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            GK  EA+E+L+ MK  G + D+  +  ++   C  GK++EA + ++++   G+  N+ +
Sbjct: 388 NGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGS 447

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           + +   + N++ Q   K +  RA ++   M  R       T + L+ C CK G +  +A 
Sbjct: 448 YRI---VLNSLTQ---KCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAV 501

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + +LV  G  P   TW  ++  +   RK+    ELL
Sbjct: 502 ALFDLVEMGFQPGLETWEVLIGLICRERKLLYVFELL 538



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 178/374 (47%), Gaps = 12/374 (3%)

Query: 101 PLDAMRVFDKMKE-FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           P  A+ +F+ + E  G +    +Y T+L  L   N      R    M     +       
Sbjct: 106 PQHALNIFNMVSEQNGFQHNNATYATILDKLARCNNFHAVDRVLHQMTYETCKFHEGIFV 165

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            L+K   K+S         F   P     P      T +N L    ++  A++L    + 
Sbjct: 166 NLMKHFSKSSLHEKLLHAYFSIQPIVREKPSPKALSTCLNLLLDSNRVDLARKLLLHAKR 225

Query: 220 KAC-SPTVVTYTSLINGLCQSKSVEEAMRLFEEMR-SKGVEPNVFTYSSLMDGLCKGGCS 277
                P V  +  L+   C++  ++ A  + EEMR S+   PN+ TYS+LMDGLC+ G  
Sbjct: 226 DLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRV 285

Query: 278 SQAMELLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
            +A +L + M+S+ H  P+ +TY+ L+NG C+ GK   A  ++  MK  G  P+   Y  
Sbjct: 286 KEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSA 345

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395
           ++   C +GK ++A   L E+   G+ P+ +T++       +++  LC+    + A ++ 
Sbjct: 346 LVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYT-------SLINFLCRNGKSDEAIELL 398

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M+      DS+T++ L+   C++G   ++  +V++L   G   ++G++  V+ +L  +
Sbjct: 399 EEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQK 458

Query: 456 RKMRQAAELLLLEL 469
            ++++A ELL L L
Sbjct: 459 CELKRAKELLGLML 472



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 6/271 (2%)

Query: 90  SICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
            +CR  GRV    D   +F++M       P P +Y  ++       +   A    + M+ 
Sbjct: 278 GLCRN-GRVKEAFD---LFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKS 333

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G  P V + + L+  LCK  G ++ A  +  E+   G  PD+ TY +LIN LCR GK  
Sbjct: 334 NGCYPNVYNYSALVDGLCK-VGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSD 392

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           EA EL +EM+   C    VT+  L+ GLC+    EEA+ + E++  +GV  N  +Y  ++
Sbjct: 393 EAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVL 452

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           + L +     +A ELL +M+ +  +P+  T + LL  LCK G + +A   L  +   G +
Sbjct: 453 NSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQ 512

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           P    +  +I   C   K       LDE+V+
Sbjct: 513 PGLETWEVLIGLICRERKLLYVFELLDELVV 543



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            +G + D  T++ +I+ L    +   A +LL+ + +  C      F  +  G  R  +  
Sbjct: 368 GSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFE 427

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ + +K+ + G      SY  VL  L ++ +LK A      M   G QP  A+ N L+
Sbjct: 428 EALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELL 487

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
             LCK     DAA  +F ++   G  P   T+  LI  +CR  K+    EL  E+
Sbjct: 488 VCLCKAGMVDDAAVALF-DLVEMGFQPGLETWEVLIGLICRERKLLYVFELLDEL 541


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 237/477 (49%), Gaps = 60/477 (12%)

Query: 43  ANGFRHDNSTFSL------------MISKLVSANQFRP-AEDLLDRVNKEKCDIT----E 85
           A+ FRH + TF L            ++ K +S   F P A  LL   N+     T     
Sbjct: 112 ASLFRHLHDTFHLCSSPFSSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYN 171

Query: 86  DIFLSICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            +  ++ R     HR  D A RVF  M   G  P   +Y  ++  +V +  L+    F R
Sbjct: 172 AVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMR 231

Query: 145 HMREIGIQPCVASLNVLIKALCK----------------------------------NSG 170
            M + GI P V + N LI A CK                                    G
Sbjct: 232 KMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKG 291

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            M    ++  EM  +G  PD  TY TL+NG C+ G +++   L  EM  K  SP VVTYT
Sbjct: 292 RMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYT 351

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LIN +C++ ++  A+ +F++MR +G+ PN  TY++L+DG C+ G  ++A ++L  MI  
Sbjct: 352 TLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVS 411

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++VTY+ L++G C  G++QEAV IL  M  +GL PD   Y  +I+ FC   +  +A
Sbjct: 412 GFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKA 471

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLT 409
               +EMV  G+ P+ +T+S       +++QGLC +     AF ++  M  R +  D +T
Sbjct: 472 FQMKEEMVEKGVLPDTVTYS-------SLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVT 524

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           Y+SLI  +C  G++ K+ R+ DE+V  G LPD  T+S ++  L  + + + A  LLL
Sbjct: 525 YTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLL 581



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 197/394 (50%), Gaps = 16/394 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRPLDAMRVF 108
           +++ +I+ L    +     +L++ +  +     E  + ++  G+   G +H+    + + 
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQ---GLVLL 335

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M   G  P   +Y T++  + +   L  A   +  MR  G++P   +   LI   C+ 
Sbjct: 336 SEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQ- 394

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G M+ A+K+  EM   G +P   TY  L++G C LG++ EA  + + M  +   P VV+
Sbjct: 395 KGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVS 454

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y+++I G C+ + + +A ++ EEM  KGV P+  TYSSL+ GLC      +A +L + M+
Sbjct: 455 YSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMM 514

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   P+ VTY++L+N  C +G+L +A+ + D M  +G  PD   Y  +I+      + +
Sbjct: 515 RRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTK 574

Query: 349 EAANFLDEMVLGGITPNRLTWSLHI--------RIHNTVVQGLC-KTDPNRAFQVYLSMR 399
            A   L ++      P+ +T++  I        +    +V+G C K   N A +V+ +M 
Sbjct: 575 VAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTML 634

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            R+   ++  Y+ +I    + G++HK+  +  EL
Sbjct: 635 QRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMEL 668



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 180/397 (45%), Gaps = 63/397 (15%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +FD+M+  G  P  ++Y T++    ++  +  A++    M   G  P V + N L+ 
Sbjct: 366 AVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVH 425

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR---LGKIYEAKELFKEMETK 220
             C   G +  A  I R M  RG  PD  +Y T+I G CR   LGK ++ KE   EM  K
Sbjct: 426 GYCF-LGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKE---EMVEK 481

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  VTY+SLI GLC  + + EA  LF EM  +G+ P+  TY+SL++  C  G  S+A
Sbjct: 482 GVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKA 541

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII-S 339
           + L   M+ +   P+ VTYS L+NGL K+ + + A  +L ++  +   PD   Y  +I +
Sbjct: 542 LRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIEN 601

Query: 340 C--------------FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           C              FC  G   EA      M+     PN   ++L I  H+        
Sbjct: 602 CSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSR------G 655

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG----------DIHKSARIVD---- 431
            + ++A+ +Y+ + + S +  ++   +L+    ++G          +I +S R+ D    
Sbjct: 656 GNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVA 715

Query: 432 ---------------------ELVLDGCLPDEGTWSA 447
                                E+  DG LPD G  S+
Sbjct: 716 KVLVEVNFKEGNMDAVLNVLTEMAKDGLLPDGGIHSS 752



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 154/389 (39%), Gaps = 54/389 (13%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++++A+ IFD        G R +  T++ +I           A  +L  +       +  
Sbjct: 362 NLSRAVEIFDQMRVR---GLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVV 418

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + ++  GY  + R  +A+ +   M E G  P   SY TV+A    E +L  AF+    M
Sbjct: 419 TYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEM 478

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G+ P   + + LI+ LC     ++A F +FREM  RG  PD  TY +LIN  C  G+
Sbjct: 479 VEKGVLPDTVTYSSLIQGLCLQQKLVEA-FDLFREMMRRGLPPDEVTYTSLINAYCVDGE 537

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQS--------------------------- 239
           + +A  L  EM  +   P  VTY+ LINGL +                            
Sbjct: 538 LSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNT 597

Query: 240 ----------KSVE-------------EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
                     KSVE             EA R+F+ M  +  +PN   Y+ ++ G  +GG 
Sbjct: 598 LIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGN 657

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A  L   +       + V    L+  L +EG   E   +L  +       DA +   
Sbjct: 658 VHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKV 717

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPN 365
           ++      G      N L EM   G+ P+
Sbjct: 718 LVEVNFKEGNMDAVLNVLTEMAKDGLLPD 746


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 124/361 (34%), Positives = 209/361 (57%), Gaps = 9/361 (2%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           V D M+  GC P   +Y T++A      ++  A R    MRE G++P + + N ++  LC
Sbjct: 177 VGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLC 236

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +G M+ A K+F EM   G TPD  +Y TL++G C+ G ++EA  +F EM  K   P V
Sbjct: 237 K-AGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDV 295

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VT+TSLI+ +C++ ++E A+ L  +MR +G+  N FT+++L+DG C+ G    A+  ++ 
Sbjct: 296 VTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKE 355

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M   R +P++V Y+ L+NG CK G++ EA E++  M+ +G+KPD   Y  I+S +C IG 
Sbjct: 356 MRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGD 415

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
              A     +M+  G+ P+ +T+S       ++++GLC+      A +++  M    +  
Sbjct: 416 TDSAFELNRKMLKKGVVPDAITYS-------SLIRGLCEERRLGDACELFEKMLQLGLQP 468

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D  TY++LI   CK+G++ K+  + DE++  G LPD  T+S ++  L    + ++A  LL
Sbjct: 469 DEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLL 528

Query: 466 L 466
            
Sbjct: 529 F 529



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 219/445 (49%), Gaps = 11/445 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
            G R    TF+ +++ L  A +   A  + D + +E        + ++  GY +     +
Sbjct: 219 GGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHE 278

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ VF +M + G  P   ++ +++  +     L+ A      MRE G++    +   LI 
Sbjct: 279 ALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALID 338

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+N G +D A    +EM      P    Y  LING C+LG++ EA+EL  EME K   
Sbjct: 339 GFCRN-GFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMK 397

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY+++++G C+    + A  L  +M  KGV P+  TYSSL+ GLC+      A EL
Sbjct: 398 PDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACEL 457

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M+    +P+  TY+TL++G CKEG +Q+A+ + D M  +G+ PD   Y  +I     
Sbjct: 458 FEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSK 517

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT--------VVQGLC-KTDPNRAFQV 394
             + +EA   L ++      P+ + +   +    T        +++G   K   N+A +V
Sbjct: 518 SARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKV 577

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           Y SM +R   +D   YS LI   C+ G+I K+     +L+  G  P+  +  +++  L++
Sbjct: 578 YQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFE 637

Query: 455 RRKMRQAAELLLLELMNKCVEAEVD 479
              M   A+ ++ EL+N C  A+ +
Sbjct: 638 -EGMTVEADNVIQELLNCCSLADAE 661



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 192/352 (54%), Gaps = 9/352 (2%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           G  P+  +Y  VL + + +  L  A R    M   G+ P V + N+L++ALC      +A
Sbjct: 115 GYAPSLLAYNAVL-LALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
              +  +M   GC P+  TY TL+   CR G++  A+ L   M      P++VT+ +++N
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           GLC++  +E+A ++F+EM  +G+ P+  +Y++L+ G CK GC  +A+ +   M  K   P
Sbjct: 234 GLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVP 293

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++VT+++L++ +C+ G L+ AV ++ +M+ +GL+ +   +  +I  FC  G   +A   +
Sbjct: 294 DVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAM 353

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
            EM    I P+ + +       N ++ G CK    + A ++   M  + +  D +TYS++
Sbjct: 354 KEMRECRIQPSVVCY-------NVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTI 406

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ +CK GD   +  +  +++  G +PD  T+S+++  L + R++  A EL 
Sbjct: 407 LSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELF 458



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 123/265 (46%), Gaps = 22/265 (8%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T+S ++S          A +L  ++ K+        + S+ RG     R  
Sbjct: 393 AKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLG 452

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F+KM + G +P   +Y T++    +E  ++ A   +  M + G+ P V + +VLI
Sbjct: 453 DACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLI 512

Query: 163 KALCKNSGTMDAA---FKIFREMPNRGCTPDSYTYGTLIN---------------GLCRL 204
             L K++ T +A    FK++ E P     PD+  Y  L++               G    
Sbjct: 513 DGLSKSARTKEAQRLLFKLYYEDP----VPDNIKYEALMHCCRTAEFKSVVALLKGFSMK 568

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G + +A ++++ M  +        Y+ LI+G C+  ++ +A+   +++   G  PN  + 
Sbjct: 569 GLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTST 628

Query: 265 SSLMDGLCKGGCSSQAMELLQMMIS 289
            SL+ GL + G + +A  ++Q +++
Sbjct: 629 ISLVRGLFEEGMTVEADNVIQELLN 653


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 231/432 (53%), Gaps = 15/432 (3%)

Query: 37  SATAEYANG-FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95
           S T+ +  G ++  + +F  +I    ++  F   E LL ++  E     E  F+ + + Y
Sbjct: 51  SNTSSHKWGSYKLGDLSFYSLIENFSNSLDFTSLEQLLHQMKCENRVFIEKSFIIMFKAY 110

Query: 96  GRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG---- 150
           G+ H P  A+ +F +M  EF C+ T KS+ TVL ++++E    LA  FY H+ +      
Sbjct: 111 GKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSN 170

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           IQP   S N++IKALC+  G +D A ++FR M +R C  D YTY TL++GLC  G+I EA
Sbjct: 171 IQPNGLSFNLVIKALCR-VGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEA 229

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             L  EM+ +   P  V +  LI+ LC+   +  A +L + M  KG  PN  TY+SL+ G
Sbjct: 230 VSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHG 289

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC  G   +AM LL  M++ +  PN +T+ TL++G  K G+  + V +L  ++ +G + +
Sbjct: 290 LCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGN 349

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
              Y  +IS     GK +       EMV  G  PN + +S        ++ GLC+   P+
Sbjct: 350 EFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYS-------ALIDGLCREGKPD 402

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A +  + M+N+  + +S TYSSL+  + + GDIHK+  +  E+  + C   E  +S ++
Sbjct: 403 EAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILI 462

Query: 450 TALWDRRKMRQA 461
             L    K+++A
Sbjct: 463 NGLCKNGKLKEA 474



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 195/461 (42%), Gaps = 75/461 (16%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +F+L+I  L        A ++   ++   C      + ++  G     R  +A+ + D+M
Sbjct: 177 SFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEM 236

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P P ++  +++ L ++  L  A +   +M   G  P   + N L+  LC   G 
Sbjct: 237 QVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCL-KGK 295

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +   M    C P+  T+GTL++G  + G+  +   +   +E K       +Y+S
Sbjct: 296 LDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSS 355

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+GL +    E  M+L++EM  KG +PN   YS+L+DGLC+ G   +A E L  M +K 
Sbjct: 356 LISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKG 415

Query: 292 HRPNIVTYSTLL-----------------------------------NGLCKEGKLQEAV 316
           H PN  TYS+L+                                   NGLCK GKL+EA+
Sbjct: 416 HTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEAL 475

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            +  +M  +G+K D   Y  +I  FC+    ++     ++M                   
Sbjct: 476 IVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQM------------------- 516

Query: 377 NTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
                 LC               N  +  D +TY+ L+  FC K  + ++  I++ ++  
Sbjct: 517 ------LC--------------HNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQ 556

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           GC PD  T    +  L D     Q     L EL+ + ++ +
Sbjct: 557 GCDPDFITCDIFLKTLRDNMDPPQDGREFLDELVVRLIKRQ 597



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 126/295 (42%), Gaps = 24/295 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+R +  ++S +IS L    +      L   + ++ C     ++ ++  G  R  +P +A
Sbjct: 345 GYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEA 404

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
                +MK  G  P   +Y +++    E   +  A   ++ M +          ++LI  
Sbjct: 405 KEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILING 464

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKAC 222
           LCKN G +  A  ++++M +RG   D   Y ++I+G C    + +  +LF +M       
Sbjct: 465 LCKN-GKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKL 523

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM-----------DG- 270
            P VVTY  L+N  C   SV  A+ +   M  +G +P+  T    +           DG 
Sbjct: 524 QPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGR 583

Query: 271 ---------LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
                    L K   +  A  ++++M+ K   P   T++  +  LCK  K+++ +
Sbjct: 584 EFLDELVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTWALAVQQLCKPMKVRKTI 638


>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
 gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 254/474 (53%), Gaps = 15/474 (3%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W  ++   +++ +I  +++++ A  IFD A  +Y  GF H   T+  +I KL  A  F  
Sbjct: 9   WPQRLYPKRLISMITHQENLDLAFQIFDYA-GKYHPGFSHTYDTYHSIIDKLSRARAFDG 67

Query: 69  AEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYIT 125
            E LL ++++    I   +D+F+S+ R YG   RP  A++ F ++KE F  +P+ K   T
Sbjct: 68  VESLLSQLSRNSSHIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLNT 127

Query: 126 VLAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
           +L + V+  +  L     ++ ++  G+ P V S N+LIKALCK +  ++ A K+F EMP 
Sbjct: 128 LLNVFVQNKRYHLVGSTLKNCKDKYGVLPNVFSFNILIKALCKKN-DVENALKVFDEMPT 186

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
            G  P+  TY T++ G    G +  A+++F E+  K   P   TYT L+ G C+   + +
Sbjct: 187 MGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSD 246

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A+++ + M   GVEPN  TY  ++D  CK   S +A  L+  M+ K+  P+      +++
Sbjct: 247 AIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVID 306

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
            LC++GK++ A  +  RM  +   PD  +   +I   C  GK  EA    DE   G I P
Sbjct: 307 VLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKVWEARKLFDEFEQGTI-P 365

Query: 365 NRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           + +T       +NT++ G+C + + N A +++  M  +    ++ TY+ LI  F K G +
Sbjct: 366 SLMT-------YNTLIAGMCERGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVV 418

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
            +  RI++E++ +GCLP++ T++ ++  L +        +++ + + ++ V+A+
Sbjct: 419 KEGVRILEEMLDNGCLPNKSTYTLLIEGLQESGMEGDVDKVMSMAMASREVDAD 472


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 202/362 (55%), Gaps = 3/362 (0%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S  +T A+V +LI ++ D   A+ IF+ A+ +   GF+H  ST+  +I KL  A QF+  
Sbjct: 95  SRMLTPARVHKLIASQTDALLAMEIFEVASRQ--PGFKHSYSTYHTLICKLGRARQFKTM 152

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           E L+ ++ K+ C  T  +F+ I   YG V  P +A++ F +M EFG EP  K +  +L +
Sbjct: 153 EGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIV 212

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L+E   L+ A   ++ + E GI P   + N+LI+A C +S  +  A+ +F +M  +GC P
Sbjct: 213 LIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHC-HSDKLSHAYFLFNKMHKQGCIP 271

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY  L+ GLCR  ++  A  +  EM  K   P  +TY +L+N LC+  ++ EA RL 
Sbjct: 272 DVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLL 331

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            +M+  G  P+V  Y++++ G C+ G +  A ++L+ M      PN ++Y TL+NGLC E
Sbjct: 332 SKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNE 391

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           GK  EA + ++ M   G  P   +Y  +I+  C+ GK  EA   L  M    + P+  TW
Sbjct: 392 GKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTW 451

Query: 370 SL 371
           S+
Sbjct: 452 SV 453



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 155/326 (47%), Gaps = 17/326 (5%)

Query: 147 REIGIQPCVASLNVLIKAL--CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
           R+ G +   ++ + LI  L   +   TM+    + ++M   GC      +  +I     +
Sbjct: 125 RQPGFKHSYSTYHTLICKLGRARQFKTMEG---LIQQMRKDGCPYTPGLFVDIIEIYGEV 181

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G   EA + F +M      P    +  L+  L + K +E A+ LF+++   G+ PN  TY
Sbjct: 182 GMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTY 241

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + L+   C     S A  L   M  +   P++ TYS L+ GLC++ +++ A+ +LD M  
Sbjct: 242 NILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLN 301

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +G  PDA  Y  +++  C     +EA   L +M + G  P+ + +       NTV+ G C
Sbjct: 302 KGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINY-------NTVITGFC 354

Query: 385 KTDPNRAF---QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           +    RA    Q+   M       ++L+Y +L+   C +G   ++   V+E++ +G +P 
Sbjct: 355 RE--GRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPH 412

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLL 467
              +  ++T L +  K+ +A E+L++
Sbjct: 413 ISIYHLLITGLCNEGKVGEACEVLVM 438



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 139/296 (46%), Gaps = 15/296 (5%)

Query: 175 AFKIFREMPNRGCTPDSY-TYGTLINGLCRLGKIYEAKE---LFKEMETKACSPTVVTYT 230
           A +IF     +     SY TY TLI   C+LG+  + K    L ++M    C  T   + 
Sbjct: 116 AMEIFEVASRQPGFKHSYSTYHTLI---CKLGRARQFKTMEGLIQQMRKDGCPYTPGLFV 172

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            +I    +     EA++ F +M   G EP    ++ L+  L +  C   A+ L + +   
Sbjct: 173 DIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEF 232

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN  TY+ L+   C   KL  A  + ++M  QG  PD   Y  ++   C   + + A
Sbjct: 233 GISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTA 292

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLT 409
              LDEM+  G  P+ LT+       NT++  LC K +   A+++   M+    + D + 
Sbjct: 293 LGVLDEMLNKGYVPDALTY-------NTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVIN 345

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y+++IT FC++G    + +I+ ++  +GCLP+  ++  ++  L +  K  +A + +
Sbjct: 346 YNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFV 401



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 116/248 (46%), Gaps = 8/248 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY +LI  L +++  +    L ++MR  G       +  +++   + G  ++A++    M
Sbjct: 135 TYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQM 194

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           +   + P    ++ LL  L +   L+ A+ +  ++   G+ P+   Y  +I   C   K 
Sbjct: 195 LEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKL 254

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVD 406
             A    ++M   G  P+  T+S+       ++QGLC K+    A  V   M N+    D
Sbjct: 255 SHAYFLFNKMHKQGCIPDVETYSI-------LMQGLCRKSQVKTALGVLDEMLNKGYVPD 307

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           +LTY++L+   C+K ++ ++ R++ ++ + GC PD   ++ V+T      +   A ++L 
Sbjct: 308 ALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILR 367

Query: 467 LELMNKCV 474
               N C+
Sbjct: 368 DMPENGCL 375


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 142/458 (31%), Positives = 249/458 (54%), Gaps = 15/458 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+    + LI+ E D  +AL IF+    +   GF H+N+T++ ++ KL  + +F+  + +
Sbjct: 58  ISHESAINLIKRETDPQRALEIFNRVAEQ--RGFSHNNATYATILHKLAKSKKFQAIDAV 115

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE-PTPKSYITVLAILV 131
           L ++  E C   E IFL++ + + ++      + +FD ++    E P+ K+  T L +LV
Sbjct: 116 LHQMTYETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLV 175

Query: 132 EENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT-P 189
           E NQ+ L  +F  + ++ + ++P     N+L+K  CKN G +D+AF++  EM     + P
Sbjct: 176 ESNQVDLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKN-GDIDSAFEVVEEMKKSHVSYP 234

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           +  TY TLINGLC  G++ EA ELF+EM +K    P  +TY +LING C  + V+ A+++
Sbjct: 235 NLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKI 294

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            E M+  G  PNVF YS+LM+G CK G   +A E+   M S   +P+ V Y+TL+N  C+
Sbjct: 295 MEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCR 354

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G++ EA+E+L  M+    + D   +  I+   C  G+++EA   L+ +   G+  N+ +
Sbjct: 355 AGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKAS 414

Query: 369 WSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           + +       V+  LC+  +  +A Q+   M  R +     T + L+   C+ G +  + 
Sbjct: 415 YRI-------VLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAV 467

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +  L+  G  P+  +W+ ++  +   RK+  A ELL
Sbjct: 468 MALLGLLELGFKPEPNSWALLVELICRERKLLPAFELL 505



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 142/275 (51%), Gaps = 2/275 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDR-VNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           T+S +I+ L  + + + A +L +  V+K++       + ++  G+    +   A+++ + 
Sbjct: 238 TYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEF 297

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           MK+ GC P   +Y  ++    +E +L+ A   +  M+ +G++P       LI   C+ +G
Sbjct: 298 MKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCR-AG 356

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +D A ++ ++M    C  D+ T+  ++ GLCR G+  EA+ + + +  +       +Y 
Sbjct: 357 RVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYR 416

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            ++N LC+   +++A +L   M  +GV P+  T + L+  LC+ G    A+  L  ++  
Sbjct: 417 IVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLEL 476

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
             +P   +++ L+  +C+E KL  A E+LD + +Q
Sbjct: 477 GFKPEPNSWALLVELICRERKLLPAFELLDDLVIQ 511



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 141/315 (44%), Gaps = 13/315 (4%)

Query: 165 LCKNSGTMDAAFKIF-REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           L K       A +IF R    RG + ++ TY T+++ L +  K      +  +M  + C 
Sbjct: 66  LIKRETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCK 125

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE-PNVFTYSSLMDGLCKGGCSSQAME 282
                + +L+    +    E  + +F+ +R    E P++   S+ ++ L +        +
Sbjct: 126 FHEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRK 185

Query: 283 -LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK-PDAGLYGKIISC 340
            LL    S    PN   ++ L+   CK G +  A E+++ MK   +  P+   Y  +I+ 
Sbjct: 186 FLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLING 245

Query: 341 FCDIGKYQEAANFLDEMVLGG-ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
            C  G+ +EA    +EMV    I P+ LT+       N ++ G C  +  +RA ++   M
Sbjct: 246 LCGSGRLKEAIELFEEMVSKDQILPDALTY-------NALINGFCHGEKVDRALKIMEFM 298

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           +    + +   YS+L+  FCK+G + ++  + DE+   G  PD   ++ ++       ++
Sbjct: 299 KKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRV 358

Query: 459 RQAAELLLLELMNKC 473
            +A ELL     NKC
Sbjct: 359 DEAMELLKDMRENKC 373



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 129/285 (45%), Gaps = 3/285 (1%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           K+   +   IT + ++  +     + +A+ +F+   ++  +    D  T++ +I+     
Sbjct: 228 KSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSK--DQILPDALTYNALINGFCHG 285

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
            +   A  +++ + K  C+     + ++  G+ +  R  +A  VFD+MK  G +P    Y
Sbjct: 286 EKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGY 345

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
            T++       ++  A    + MRE   +    + NV++  LC+  G  + A  +   +P
Sbjct: 346 TTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCR-EGRFEEARGMLERLP 404

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             G   +  +Y  ++N LCR G++ +A +L   M  +   P   T   L+  LC++  V 
Sbjct: 405 YEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVG 464

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +A+     +   G +P   +++ L++ +C+      A ELL  ++
Sbjct: 465 DAVMALLGLLELGFKPEPNSWALLVELICRERKLLPAFELLDDLV 509


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/389 (34%), Positives = 214/389 (55%), Gaps = 10/389 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G  +  R  DA+R+ ++M + G  P   SY TVL    + N+++ A      M 
Sbjct: 47  YNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMV 106

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G  P V S   +I  LCK    +D A ++  +M  RGC P+  TYGTL++G CR+G +
Sbjct: 107 MRGCPPDVVSYTTVINGLCKLD-QVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDL 165

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSS 266
             A EL ++M  +   P  +TY ++++GLC  + ++ A++LF+EM   G   P+VFTYS+
Sbjct: 166 DGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYST 225

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++D L K G    A  L++ M+SK   PN+VTYS+LL+GLCK GKL EA  +L RM   G
Sbjct: 226 IVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG 285

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             P+   Y  II   C +G+  EA + L+EMV GG  PN +T+++       ++   CK 
Sbjct: 286 CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTV-------LLDAFCKC 338

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                A  +   M  +    +  TY+SL+  FCKK ++ ++ +++  ++  GC+P+  ++
Sbjct: 339 GKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSY 398

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKCV 474
           + V+  L    K+ +   LL   L N CV
Sbjct: 399 NTVIAGLCKATKVHEGVLLLEQMLSNNCV 427



 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 131/431 (30%), Positives = 230/431 (53%), Gaps = 11/431 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NGF  +  +++ ++     AN+   A  LL+++    C      + ++  G  ++ +  +
Sbjct: 73  NGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDE 132

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A RV DKM + GC+P   +Y T++        L  A    R M E G +P   + N ++ 
Sbjct: 133 ACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMH 192

Query: 164 ALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            LC     +D+A ++F+EM   G C PD +TY T+++ L + GK+ +A  L + M +K C
Sbjct: 193 GLCSGR-KLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGC 251

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP VVTY+SL++GLC++  ++EA  L + M   G  PN+ TY++++DG CK G   +A  
Sbjct: 252 SPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYH 311

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+    +PN+VTY+ LL+  CK GK ++A+ +++ M  +G  P+   Y  ++  FC
Sbjct: 312 LLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFC 371

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNR 401
              + + A   L  M+  G  PN +++       NTV+ GLCK T  +    +   M + 
Sbjct: 372 KKDEVERACQLLSSMIQKGCVPNVVSY-------NTVIAGLCKATKVHEGVLLLEQMLSN 424

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +   D +T++++I   CK   +  +  + + +   GC P+  T+++++  L   R+  Q 
Sbjct: 425 NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQ- 483

Query: 462 AELLLLELMNK 472
           AE LL E+  K
Sbjct: 484 AEYLLREMTRK 494



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 237/458 (51%), Gaps = 32/458 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  +++ +I+ L   +Q   A  ++D++ +  C      + ++  G+ RV     A
Sbjct: 109 GCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGA 168

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + +  KM E G  P   +Y  ++  L    +L  A + ++ M E G   P V + + ++ 
Sbjct: 169 VELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVD 228

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +L K SG +D A ++   M ++GC+P+  TY +L++GLC+ GK+ EA  L + M    CS
Sbjct: 229 SLVK-SGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCS 287

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P +VTY ++I+G C+   ++EA  L EEM   G +PNV TY+ L+D  CK G +  A+ L
Sbjct: 288 PNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGL 347

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +++M+ K + PN+ TY++LL+  CK+ +++ A ++L  M  +G  P+   Y  +I+  C 
Sbjct: 348 VEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCK 407

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRI 375
             K  E    L++M+     P+ +T++                             ++  
Sbjct: 408 ATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVT 467

Query: 376 HNTVVQGLCKTDPNRAFQVYLS--MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           +N++V GLCK+      +  L    R +  S D +TY+++I   CK   + ++ ++  ++
Sbjct: 468 YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQM 527

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           + DG  PD+ T+S V+++L   R M +A  +L L L N
Sbjct: 528 LSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN 565



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 190/357 (53%), Gaps = 11/357 (3%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M   G +     + ++L  L +  Q   A   +R M +    P   + N +I  L K S 
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSK-SD 58

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +D A ++  EM + G  P+ ++Y T+++G C+  ++  A  L ++M  + C P VV+YT
Sbjct: 59  RLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYT 118

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++INGLC+   V+EA R+ ++M  +G +PNV TY +L+DG C+ G    A+EL++ M  +
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 178

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG-LKPDAGLYGKIISCFCDIGKYQE 349
            +RPN +TY+ +++GLC   KL  A+++   M+  G   PD   Y  I+      GK  +
Sbjct: 179 GYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDD 238

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A   ++ MV  G +PN +T+S       +++ GLCK    + A  +   M     S + +
Sbjct: 239 ACRLVEAMVSKGCSPNVVTYS-------SLLHGLCKAGKLDEATALLQRMTRSGCSPNIV 291

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TY+++I   CK G I ++  +++E+V  GC P+  T++ ++ A     K   A  L+
Sbjct: 292 TYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLV 348



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 238/491 (48%), Gaps = 52/491 (10%)

Query: 6   MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ 65
           +F +ST + S     L+++ K V+ A  + ++  ++   G   +  T+S ++  L  A +
Sbjct: 220 VFTYSTIVDS-----LVKSGK-VDDACRLVEAMVSK---GCSPNVVTYSSLLHGLCKAGK 270

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY-- 123
              A  LL R+ +  C      + +I  G+ ++ R  +A  + ++M + GC+P   +Y  
Sbjct: 271 LDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTV 330

Query: 124 --------------ITVLAILVEE-------------------NQLKLAFRFYRHMREIG 150
                         I ++ ++VE+                   ++++ A +    M + G
Sbjct: 331 LLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKG 390

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
             P V S N +I  LCK +   +    +  +M +  C PD  T+ T+I+ +C+  ++  A
Sbjct: 391 CVPNVVSYNTVIAGLCKATKVHEGVL-LLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIA 449

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM-RSKGVEPNVFTYSSLMD 269
            ELF  ++   C+P +VTY SL++GLC+S+  ++A  L  EM R +G  P++ TY++++D
Sbjct: 450 YELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVID 509

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLCK     +A +L   M+S    P+ VTYS +++ LCK   + EA  +L+ M   G  P
Sbjct: 510 GLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDP 569

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
            A  YG +I  FC  G   +A   L  ++  G  P+ +T+S+ I   +       +    
Sbjct: 570 GAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSK------RGRLR 623

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A ++  +M    +  D++TY++L+  FC       +  + + +   GC PD  T++ ++
Sbjct: 624 QAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683

Query: 450 TALWDRRKMRQ 460
             L D++  + 
Sbjct: 684 GHLVDKKSYKD 694



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 53/109 (48%)

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
           NR     H  +H ++++GLC         ++    +++   DS+TY+++I    K   + 
Sbjct: 2   NRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLD 61

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            + R+++E+V +G  P+  +++ V+       ++  A  LL   +M  C
Sbjct: 62  DAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGC 110


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/429 (34%), Positives = 231/429 (53%), Gaps = 14/429 (3%)

Query: 39  TAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98
           +A     F+  +ST S MI    ++  F   E LL R+  E   I E  F+ + R YG+ 
Sbjct: 66  SAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKA 125

Query: 99  HRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM----REIGIQP 153
           H P  A+ +F +M  EF C+ + KS+ +VL +++ E        FY ++      + I P
Sbjct: 126 HLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISP 185

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
              S N++IKALCK    +D A ++FR MP R C PD YTY TL++GLC+  +I EA  L
Sbjct: 186 NGLSFNLVIKALCKLR-FVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
             EM+++ CSP+ V Y  LI+GLC+   +    +L + M  KG  PN  TY++L+ GLC 
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 304

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A+ LL+ M+S +  PN VTY TL+NGL K+ +  +AV +L  M+ +G   +  +
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHI 364

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAF 392
           Y  +IS     GK +EA +   +M   G  PN       I +++ +V GLC+   PN A 
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPN-------IVVYSVLVDGLCREGKPNEAK 417

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++   M       ++ TYSSL+  F K G   ++ ++  E+   GC  ++  +S ++  L
Sbjct: 418 EILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGL 477

Query: 453 WDRRKMRQA 461
               ++++A
Sbjct: 478 CGVGRVKEA 486



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/405 (31%), Positives = 196/405 (48%), Gaps = 37/405 (9%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ VF  M E  C P   +Y T++  L +E ++  A      M+  G  P     NVLI 
Sbjct: 206 AIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLID 265

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G +    K+   M  +GC P+  TY TLI+GLC  GK+ +A  L + M +  C 
Sbjct: 266 GLCKK-GDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCI 324

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY +LINGL + +   +A+RL   M  +G   N   YS L+ GL K G + +AM L
Sbjct: 325 PNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSL 384

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M  K  +PNIV YS L++GLC+EGK  EA EIL+RM   G  P+A  Y  ++  F  
Sbjct: 385 WRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFK 444

Query: 344 IGKYQEAANFLDEMVLGGITPNR--------------------LTWSLHIRI-------- 375
            G  +EA     EM   G + N+                    + WS  + I        
Sbjct: 445 TGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVA 504

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSM---RNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           ++++++GLC     + A ++Y  M          D +TY+ L+   C + DI ++  +++
Sbjct: 505 YSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLN 564

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRR----KMRQAAELLLLELMNK 472
            ++  GC PD  T +  +  L ++     K R   E L++ L+ +
Sbjct: 565 SMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKR 609



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 116/258 (44%), Gaps = 15/258 (5%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T +S+I     S   +   +L   +R +       ++  +     K     +A++L   M
Sbjct: 79  TLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRM 138

Query: 288 ISK-RHRPNIVTYSTLLNGLCKEGKLQEAVEILD-----RMKLQGLKPDAGLYGKIISCF 341
           + + R + ++ +++++LN +  EG     +E  D      M +  + P+   +  +I   
Sbjct: 139 VDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMN-ISPNGLSFNLVIKAL 197

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C +     A      M      P+  T+        T++ GLCK +  + A  +   M++
Sbjct: 198 CKLRFVDRAIEVFRGMPERKCLPDGYTYC-------TLMDGLCKEERIDEAVLLLDEMQS 250

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
              S   + Y+ LI   CKKGD+ +  ++VD + L GC+P+E T++ ++  L  + K+ +
Sbjct: 251 EGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDK 310

Query: 461 AAELLLLELMNKCVEAEV 478
           A  LL   + +KC+  +V
Sbjct: 311 AVSLLERMVSSKCIPNDV 328


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score =  238 bits (606), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 153/492 (31%), Positives = 250/492 (50%), Gaps = 46/492 (9%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           ++ +  + V   +R E +V  AL  F   T   A  F+H   T+ +MI KL   ++    
Sbjct: 35  ASLLHESHVAHALRREPNVLYALQHFQYLTNTLA--FKHTPLTYHVMIEKLGRNSELDAL 92

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
             +L ++  E+   ++D F+ +   Y        A+++F ++KEFGC+PT K Y  +L  
Sbjct: 93  HYILHQMKIERIPCSQDSFICVLNSYKNSGLGDRALKMFYRIKEFGCKPTVKIYNHLLDA 152

Query: 130 LVEE--NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
           L+ E  N+  +    Y +MR  G++P V + NVL+KALCKN G +D A K+  EM  RGC
Sbjct: 153 LLGESGNKFHMIGAVYENMRGEGMEPNVFTYNVLLKALCKN-GKLDGACKLLVEMSKRGC 211

Query: 188 TPDSYTYGT--------------------------------LINGLCRLGKIYEAKELFK 215
            PD  +Y T                                LI GLCR G++ E   L  
Sbjct: 212 VPDGVSYTTVVAAMCEDGRVEEAREVARRFGAEGVVSVCNALICGLCREGRVGEVFGLMD 271

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM      P VV+Y+S+I+ L     VE A+ +  +M  +G  PNV T+SSLM G   GG
Sbjct: 272 EMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGG 331

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL-KPDAGLY 334
              + + L ++M+ +  RPN+V Y+TLLNGLC  G L EAV++  RM+     +P+   Y
Sbjct: 332 RVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTY 391

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQ 393
             ++  F   G  Q A+   ++MV  G+ PN       + ++ ++V  LCK    ++A++
Sbjct: 392 STLVHGFVKAGDLQGASEVWNKMVNCGVRPN-------VVVYTSMVDVLCKNSMFDQAYR 444

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +  +M         +T+++ I   C  G +  + R+VD++   GCLPD  T++ ++  L+
Sbjct: 445 LIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLF 504

Query: 454 DRRKMRQAAELL 465
              ++++A EL+
Sbjct: 505 SVNELKEACELI 516



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 195/410 (47%), Gaps = 17/410 (4%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           +F        NG   +  ++S +IS L    +   A  +L ++ +  C      F S+ +
Sbjct: 266 VFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMK 325

Query: 94  GY---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REI 149
           GY   GRV   +   RV   M   G  P    Y T+L  L     L  A      M ++ 
Sbjct: 326 GYFLGGRVGEGVGLWRV---MVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDC 382

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
             +P V + + L+    K +G +  A +++ +M N G  P+   Y ++++ LC+     +
Sbjct: 383 FCRPNVTTYSTLVHGFVK-AGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQ 441

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  L   M T  C PTVVT+ + I GLC    V  AMR+ ++M+  G  P+  TY+ L+D
Sbjct: 442 AYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLD 501

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GL       +A EL++ +  ++   N+VTY+T++ G    GK +  +++L RM + G+KP
Sbjct: 502 GLFSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKP 561

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGG-ITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           DA     +I  +  +GK + A  FLD +  G  + P+       I  H +++ G+C +  
Sbjct: 562 DAITVNVVIYAYSKLGKVRTAIQFLDRITAGKELCPD-------IIAHTSLLWGICNSLG 614

Query: 389 NRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
                VYL+ M N+ I  +  T+  L+  F KK       RI+D+++  G
Sbjct: 615 IEEAIVYLNKMLNKGIFPNIATWDVLVRGFFKKLGHMGPIRILDDILGKG 664


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  237 bits (605), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 145/429 (33%), Positives = 229/429 (53%), Gaps = 14/429 (3%)

Query: 39  TAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98
           +A     F+  +ST S MI    +   F   E LL R+  E   I E  F+ + R YG+ 
Sbjct: 66  SAPKMGSFKLGDSTLSSMIENYANLGDFASVEKLLSRIRLENRVIIERSFIVVFRAYGKA 125

Query: 99  HRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM----REIGIQP 153
           H P  A+ +F +M  EF C+ + KS+ +VL +++ E        FY ++      + I P
Sbjct: 126 HLPEKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISP 185

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
              S N++IKALCK  G +D A ++FR MP + C PD YTY TL++GLC+  +I EA  L
Sbjct: 186 NGLSFNLVIKALCK-LGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLL 244

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
             EM+++ CSP+ V Y  LI+GLC+   +    +L + M  KG  PN  TY++L+ GLC 
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCL 304

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A+ LL+ M+S +  PN VTY TL+NGL K+ +  +   +L  M+ +G + +  +
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHI 364

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAF 392
           Y  +IS     GK +EA     +M   G  PN       I +++ V+ GLC+   PN A 
Sbjct: 365 YSVLISGLFKEGKAEEAMTLWKKMAEKGCRPN-------IVVYSAVIDGLCREGKPNEAK 417

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++   M +     +  TYSSL+  F K G   ++ ++  E+   GC  +E  +S ++  L
Sbjct: 418 EILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGL 477

Query: 453 WDRRKMRQA 461
               ++++A
Sbjct: 478 CGVGRVKEA 486



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 220/461 (47%), Gaps = 13/461 (2%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDR 75
            VL +I  E   ++ L  +D       N     +  +F+L+I  L        A ++   
Sbjct: 153 SVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRG 212

Query: 76  VNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
           + ++KC      + ++  G  +  R  +A+ + D+M+  GC P+P  Y  ++  L ++  
Sbjct: 213 MPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGD 272

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           L    +   +M   G  P   + N LI  LC   G +D A  +   M +  C P+  TYG
Sbjct: 273 LSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLK-GKLDKAVSLLERMVSSKCIPNDVTYG 331

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           TLINGL +  +  +   L   ME +        Y+ LI+GL +    EEAM L+++M  K
Sbjct: 332 TLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEK 391

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G  PN+  YS+++DGLC+ G  ++A E+L  MIS    PN+ TYS+L+ G  K G  +EA
Sbjct: 392 GCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEA 451

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           +++   M   G   +   Y  +I   C +G+ +EA     +M+  GI P+ + +S     
Sbjct: 452 IQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYS----- 506

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSM---RNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
             ++++GLC     + A ++Y  M          D +TY+ L+   C + D+ ++  +++
Sbjct: 507 --SMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLN 564

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
            ++  GC PD  T +  +  L ++    +     L EL+ +
Sbjct: 565 CMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVAR 605



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 15/213 (7%)

Query: 273 KGGCSSQAMELLQMMISK-RHRPNIVTYSTLLNGLCKEGKLQEAVEILD-----RMKLQG 326
           K     +A++L   M+ + R + ++ +++++LN +  EG     +E  D      M +  
Sbjct: 124 KAHLPEKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMN- 182

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           + P+   +  +I   C +G    A      M      P+  T+        T++ GLCK 
Sbjct: 183 ISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYC-------TLMDGLCKE 235

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
           +  + A  +   M++   S   + Y+ LI   CKKGD+ +  ++VD + L GC P+E T+
Sbjct: 236 ERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTY 295

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           + ++  L  + K+ +A  LL   + +KC+  +V
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDV 328


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 239/462 (51%), Gaps = 20/462 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT +Q+ +L+    DV  ++ +F+ A  +   G+ H    + L+I KL +  +F+  + L
Sbjct: 59  ITPSQLCKLLELPLDVPTSMDLFEKAGLQ--RGYIHSFHVYYLLIDKLGNVGEFKMIDKL 116

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILV 131
           L ++  E C   E +F+ I R YG+   P  A R+   M    C EPT KSY  VL ILV
Sbjct: 117 LKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILV 176

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
             N  K+A   +  M   GI P V +  V++KA C     +D+A  + R+M   GC P+S
Sbjct: 177 AGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCM-VNEVDSACSLLRDMTKHGCVPNS 235

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
             Y  LI+ L    ++ EA +L +EM    C P V T+  +I+GLC++  + EA +L + 
Sbjct: 236 IIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDR 295

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M  +    +      LM GLC+ G   +A    + M+SK   PN V Y+TL+NG    G+
Sbjct: 296 MLLRDFTADALIQGYLMHGLCRMGKVDEA----RAMLSKIPNPNTVLYNTLINGYVVSGR 351

Query: 312 LQEAVEILDR-MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            +EA ++L + M + G +PDA  +  +I   C  G    A  FLDEMV  G  PN +T++
Sbjct: 352 FEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYT 411

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
           +       ++ G CK      A +V  SM  + +S++++ Y+ LI   CK G I  + ++
Sbjct: 412 I-------LIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQM 464

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL---LLLE 468
             E+   GC PD  T+++++  L    KM +A  L   +LLE
Sbjct: 465 YGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLE 506



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 175/330 (53%), Gaps = 1/330 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  TF++MI  L        A + LD + K+  +     +  +  G+ +     +A
Sbjct: 367 GFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEA 426

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            +V + M   G       Y  ++  L ++ +++ A + Y  M   G +P + + N LI  
Sbjct: 427 SKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYG 486

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN   M+ A  ++R+M   G   ++ TY TLI+   RL  I +A +L  EM  + C  
Sbjct: 487 LCKND-KMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPL 545

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +TY  LI  LC++ + E+ + L E+M  + + P++ + + L++  C+ G  + A++ L
Sbjct: 546 DNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFL 605

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + MI +   P+IVTY++L+NGLCK G+ QEA+ + + ++ +G+ PDA  Y  +IS +C  
Sbjct: 606 RDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYE 665

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           G + +A   L + V  G  PN +TWS+ I 
Sbjct: 666 GLFNDACQLLFKGVSNGFIPNEITWSILIN 695



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 197/368 (53%), Gaps = 14/368 (3%)

Query: 87  IFLSICRGY---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           ++ ++  GY   GR     D +  +  M   G EP   ++  ++  L ++  L  A  F 
Sbjct: 338 LYNTLINGYVVSGRFEEAKDLL--YKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFL 395

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M + G +P V +  +LI   CK  G  + A K+   M  +G + ++  Y  LI  LC+
Sbjct: 396 DEMVKKGFEPNVITYTILIDGFCK-QGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCK 454

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            GKI +A +++ EM +K C P + T+ SLI GLC++  +EEA+ L+ +M  +GV  N  T
Sbjct: 455 DGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVT 514

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y++L+    +     QA +L+  M  +    + +TY+ L+  LCK G  ++ + ++++M 
Sbjct: 515 YNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMF 574

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            + + P       +I+ FC  GK  +A  FL +M+  G+TP+ +T+       N+++ GL
Sbjct: 575 GEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTY-------NSLINGL 627

Query: 384 CKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK      A  ++  ++ + I  D++TY++LI+ +C +G  + + +++ + V +G +P+E
Sbjct: 628 CKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNE 687

Query: 443 GTWSAVMT 450
            TWS ++ 
Sbjct: 688 ITWSILIN 695



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 221/472 (46%), Gaps = 25/472 (5%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I    ++  +     VN+A+ + +     +  G   D  TF+ +I  L  A +   A  L
Sbjct: 236 IIYQMLIHALSENNRVNEAMKLLEEM---FLMGCEPDVQTFNDVIHGLCKAGRIHEAAKL 292

Query: 73  LDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS--YITVLA 128
            DR+     D T D  +   +  G  R+ +  +A  +  K+      P P +  Y T++ 
Sbjct: 293 HDRMLLR--DFTADALIQGYLMHGLCRMGKVDEARAMLSKI------PNPNTVLYNTLIN 344

Query: 129 ILVEENQLKLAFRF-YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
             V   + + A    Y++M   G +P   + N++I  LCK  G + +A +   EM  +G 
Sbjct: 345 GYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCK-KGYLVSALEFLDEMVKKGF 403

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            P+  TY  LI+G C+ G   EA ++   M  K  S   V Y  LI  LC+   +++A++
Sbjct: 404 EPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQ 463

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           ++ EM SKG +P+++T++SL+ GLCK     +A+ L + M+ +    N VTY+TL++   
Sbjct: 464 MYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFL 523

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           +   +Q+A +++  M+ +G   D   Y  +I   C  G  ++    +++M    I P+  
Sbjct: 524 RLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPS-- 581

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
                I   N ++   C+T   N A Q    M  R ++ D +TY+SLI   CK G   ++
Sbjct: 582 -----INSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEA 636

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
             + + L   G  PD  T++ +++          A +LL   + N  +  E+
Sbjct: 637 LNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEI 688


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 251/486 (51%), Gaps = 41/486 (8%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T I  + V+  +R E D+  A   F S     A  F+H   T+ +MI KL         +
Sbjct: 42  TPIKESDVVMRLRTETDIVLASNYFRSIANSKA--FQHTQLTYQIMIEKLGRECDVDGVQ 99

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL ++  E    +ED+F+++   Y RV     A+++F +++EFGC+PT K Y  +L  +
Sbjct: 100 YLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAM 159

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           + EN+ ++    Y +M+  G +P V + N+L+KALCKN+  +D A K+  EM N+GC PD
Sbjct: 160 LSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNN-RVDGACKLLVEMSNKGCEPD 218

Query: 191 SYTYGTLINGLCRLGKIYEAKE------------------------------LFKEMETK 220
             +Y T+I+ + +LGK+ EA+E                              L  +M  K
Sbjct: 219 VVSYTTVISSMSKLGKVEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEK 278

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P V+TY+++I+ L    +VE A+ ++ +M  +G  PNV+T++SLM G    G   +A
Sbjct: 279 GIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEA 338

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + +   M  +   PN+V Y+TL++GLC  GK+ EAV +  +M+  G  P+   YG +I  
Sbjct: 339 LNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDG 398

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           F   G    A+   ++M+  G  PN       + ++ ++V  LC++   ++A+ +   M 
Sbjct: 399 FAKAGDLVGASEIWNKMMTNGCIPN-------VVVYTSMVNVLCRSSMFSQAWSLIEKMS 451

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
             +   +++T+++ I   C  G +  +  +  ++   GC P+  T++ V+  L    +++
Sbjct: 452 TDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIK 511

Query: 460 QAAELL 465
           +A EL+
Sbjct: 512 EALELV 517



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 216/414 (52%), Gaps = 16/414 (3%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPL 102
           F+ + S ++ +I+      + +    LL ++ ++  D   IT    +S   G G V    
Sbjct: 245 FQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVEL-- 302

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+ V+ KM   GC P   ++ +++       ++  A   +  M E G +P V + N LI
Sbjct: 303 -ALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLI 361

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC + G M  A  +  +M   GC+P+  TYG LI+G  + G +  A E++ +M T  C
Sbjct: 362 HGLCSH-GKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGC 420

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV YTS++N LC+S    +A  L E+M +    PN  T+++ + GLC  G    A+ 
Sbjct: 421 IPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAIN 480

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M      PNI TY+ +L+GL KE +++EA+E++  M+ +G++ +   Y  I   FC
Sbjct: 481 LFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFC 540

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVY--LSMRN 400
           ++GK++EA   L +M++GG+ P+ +T+  +   +   +QG  KT    A Q+   LS   
Sbjct: 541 NVGKFEEALKLLGKMLVGGVKPDAITY--NTLTYAYCMQGKVKT----AIQLLDKLSAGG 594

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           + +  +   Y+SL+   C +  + ++   +D+++ +G   +  TW+A++  L++
Sbjct: 595 KWVP-EVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGLFN 647



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 161/333 (48%), Gaps = 5/333 (1%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +AL I++    E   GF  +   ++ +I  L S  +   A  +  ++ +  C      + 
Sbjct: 337 EALNIWNRMAEE---GFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYG 393

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  G+ +    + A  +++KM   GC P    Y +++ +L   +    A+     M   
Sbjct: 394 ALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTD 453

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
              P   + N  IK LC  SG ++ A  +F +M   GC+P+  TY  +++GL +  +I E
Sbjct: 454 NCPPNTVTFNTFIKGLCC-SGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKE 512

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A EL  EME K     +VTY ++  G C     EEA++L  +M   GV+P+  TY++L  
Sbjct: 513 ALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTY 572

Query: 270 GLCKGGCSSQAMELL-QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
             C  G    A++LL ++    +  P +  Y++LL G+C +  ++EAV  LD+M  +G+ 
Sbjct: 573 AYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGIC 632

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
            +A  +  ++    +   +    + LD+++  G
Sbjct: 633 LNAATWNALVRGLFNSLGHLGPIHILDDILTSG 665



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 156/331 (47%), Gaps = 12/331 (3%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           + M+  GI  C   L + +    +  G  + A K+F  +   GC P    Y  L++ +  
Sbjct: 103 QQMKLEGIS-CSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLS 161

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
             +    + ++  M+     P V TY  L+  LC++  V+ A +L  EM +KG EP+V +
Sbjct: 162 ENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVS 221

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y++++  + K G   +A EL     S R +PN+  Y+ L+NG C+E K++E   +L +M 
Sbjct: 222 YTTVISSMSKLGKVEEAREL-----SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMV 276

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            +G+ P+   Y  +IS    IG  + A     +M + G +PN  T++  ++ +       
Sbjct: 277 EKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGY------F 330

Query: 384 CKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
            +     A  ++  M       + + Y++LI   C  G + ++  +  ++  +GC P+  
Sbjct: 331 MRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVS 390

Query: 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           T+ A++        +  A+E+    + N C+
Sbjct: 391 TYGALIDGFAKAGDLVGASEIWNKMMTNGCI 421


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 244/466 (52%), Gaps = 18/466 (3%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
            +I    V++ +R E  V  AL  F S     +N F+H   TF +MI KL    Q    +
Sbjct: 39  AEIKELDVVKRLRQESCVPLALHFFKSIAN--SNLFKHTPLTFEVMIRKLAMDGQVDSVQ 96

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL ++  +    +ED+F+S+   Y +V     A+ +F ++KEFGC+P+ K Y  VL  L
Sbjct: 97  YLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTL 156

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           + EN++++ +  YR M+  G +P V + NVL+KALCKN+  +D A K+  EM N+GC PD
Sbjct: 157 LGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNN-KVDGAKKLLVEMSNKGCCPD 215

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           + +Y T+I+ +C +G + E +EL +  E     P V  Y +LINGLC+    + A  L  
Sbjct: 216 AVSYTTVISSMCEVGLVKEGRELAERFE-----PVVSVYNALINGLCKEHDYKGAFELMR 270

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EM  KG+ PNV +YS+L++ LC  G    A   L  M+ +   PNI T S+L+ G    G
Sbjct: 271 EMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRG 330

Query: 311 KLQEAVEILDRM-KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
              +A+++ ++M +  GL+P+   Y  ++  FC  G   +A +    M   G +PN    
Sbjct: 331 TTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPN---- 386

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
              IR + +++ G  K    + A  ++  M       + + Y++++   C+     ++  
Sbjct: 387 ---IRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAES 443

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL-LLELMNKC 473
           +++ +  + C P   T++A +  L D  ++  A ++   +E  ++C
Sbjct: 444 LIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRC 489



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 203/443 (45%), Gaps = 55/443 (12%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  +++ +IS +      +   +L +R      +    ++ ++  G  + H    A  + 
Sbjct: 215 DAVSYTTVISSMCEVGLVKEGRELAERF-----EPVVSVYNALINGLCKEHDYKGAFELM 269

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---------------------- 146
            +M E G  P   SY T++ +L    Q++LAF F   M                      
Sbjct: 270 REMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLR 329

Query: 147 --------------REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
                         R  G+QP V + N L++  C + G +  A  +F  M   GC+P+  
Sbjct: 330 GTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSH-GNIVKAVSVFSHMEEIGCSPNIR 388

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYG+LING  + G +  A  ++ +M T  C P VV YT+++  LC+    +EA  L E M
Sbjct: 389 TYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIM 448

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR--PNIVTYSTLLNGLCKEG 310
             +   P+V T+++ + GLC  G    A ++ + M  ++HR  PNIVTY+ LL+GL K  
Sbjct: 449 SKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQM-EQQHRCPPNIVTYNELLDGLAKAN 507

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +++EA  +   + ++G++  +  Y  ++   C+ G    A   + +M++ G +P+ +T  
Sbjct: 508 RIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITM- 566

Query: 371 LHIRIHNTVVQGLCKT-DPNRAFQVY--LSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                 N ++   CK     RA Q+   +S   R    D ++Y+++I   C+        
Sbjct: 567 ------NMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGV 620

Query: 428 RIVDELVLDGCLPDEGTWSAVMT 450
            +++ ++  G +P   TWS ++ 
Sbjct: 621 ILLERMISAGIVPSIATWSVLIN 643



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 178/369 (48%), Gaps = 9/369 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           ++S +I+ L ++ Q   A   L ++ K  C        S+ +G        DA+ ++++M
Sbjct: 283 SYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQM 342

Query: 112 -KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
            + FG +P   +Y T++        +  A   + HM EIG  P + +   LI    K  G
Sbjct: 343 IRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKR-G 401

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           ++D A  I+ +M   GC P+   Y  ++  LCR  K  EA+ L + M  + C+P+V T+ 
Sbjct: 402 SLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFN 461

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           + I GLC +  ++ A ++F +M  +    PN+ TY+ L+DGL K     +A  L + +  
Sbjct: 462 AFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFM 521

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           +    +  TY+TLL+G C  G    A++++ +M + G  PD      II  +C  GK + 
Sbjct: 522 RGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAER 581

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSL 408
           AA  LD +  G     R  W   +  +  V+ GLC+++      + L  M +  I     
Sbjct: 582 AAQMLDLVSCG-----RRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIA 636

Query: 409 TYSSLITCF 417
           T+S LI CF
Sbjct: 637 TWSVLINCF 645


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/482 (29%), Positives = 247/482 (51%), Gaps = 45/482 (9%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D NK  ++  + ++      RHD STF+++I  L  A+Q RPA  +++ +        E 
Sbjct: 180 DANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDET 239

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            F +I +GY        A+R+ ++M E+GC  T  +   ++    ++ ++  A  F +  
Sbjct: 240 TFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEA 299

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G +P   + N L+  LCK  G    A ++   M   G  PD YTY +LI+GLC+LG+
Sbjct: 300 VSEGFRPDQFTYNTLVNGLCK-IGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGE 358

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA--------------------- 245
           I EA ++  +M ++ CSP  VTY ++I+ LC+   V+EA                     
Sbjct: 359 IEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNS 418

Query: 246 --------------MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
                         M LFEEM+ KG  P+ FTY+ L+D LC      +A+ LL+ M    
Sbjct: 419 LIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG 478

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              N+V Y+TL++G CK  +++EA EI D M+LQG+  D+  Y  +I   C   + ++AA
Sbjct: 479 CARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAA 538

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
             +D+M++ G+ P++ T+       N+++   CKT D  +A  +  +M +   + D +TY
Sbjct: 539 QLMDQMIMEGLRPDKFTY-------NSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTY 591

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           ++LI+  CK G +  ++R++  + + G +     ++ V+ AL+ R +  +A   L  E++
Sbjct: 592 ATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMR-LFREML 650

Query: 471 NK 472
           +K
Sbjct: 651 DK 652



 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 237/455 (52%), Gaps = 12/455 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
            T  Q+++ +R + D   AL +F+ A+ +    F   +S +  ++ KL  A  F     +
Sbjct: 62  FTPKQLIETLRRQTDEVAALRVFNWASKQ--PNFVPSSSVYEEILRKLGKAGSFEYMRRV 119

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK-EFGCEPTPKSYITVLAILV 131
           L+ +    C+    IFL     YG+     + + +   M+ E+  +P  + Y  +L +LV
Sbjct: 120 LEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLV 179

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           + N+LKL    +  M    I+  V++ N+LIKALCK +  +  A  +  EMP+ G +PD 
Sbjct: 180 DANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCK-AHQVRPAILMMEEMPSYGLSPDE 238

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            T+ T++ G    G +  A  + ++M    C  T VT   LING C+   +++A+   +E
Sbjct: 239 TTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQE 298

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
             S+G  P+ FTY++L++GLCK G +  AME++  M+     P+I TY++L++GLCK G+
Sbjct: 299 AVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGE 358

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           ++EAV+ILD+M  +   P+A  Y  IIS  C   +  EA      +   GI P+  T+  
Sbjct: 359 IEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTF-- 416

Query: 372 HIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                N+++QGLC  ++   A  ++  M+ +    D  TY+ LI   C    + ++  ++
Sbjct: 417 -----NSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLL 471

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E+ L+GC  +   ++ ++      +++ +A E+ 
Sbjct: 472 KEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIF 506



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 197/392 (50%), Gaps = 46/392 (11%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++AL     A +E   GFR D  T++ +++ L      + A +++D +     D     
Sbjct: 289 IDQALSFIQEAVSE---GFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYT 345

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+  G  ++    +A+++ D+M    C P   +Y  +++ L +EN++  A    R + 
Sbjct: 346 YNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLT 405

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG------------ 195
             GI P V + N LI+ LC +S    +A  +F EM  +GC PD +TY             
Sbjct: 406 SKGILPDVCTFNSLIQGLCLSS-NHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKL 464

Query: 196 -----------------------TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
                                  TLI+G C+  +I EA+E+F EME +  S   VTY +L
Sbjct: 465 EEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTL 524

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+GLC+SK VE+A +L ++M  +G+ P+ FTY+SL+   CK G   +A +++Q M S   
Sbjct: 525 IDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGC 584

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            P+IVTY+TL++GLCK G++Q A  +L  ++++G+      Y  +I       +  EA  
Sbjct: 585 NPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMR 644

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
              EM+     P+ +T+ +       V +GLC
Sbjct: 645 LFREMLDKSEPPDAITYKI-------VYRGLC 669



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 145/303 (47%), Gaps = 2/303 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  TF+ +I  L  ++  + A DL + +  + C   E  +  +        +  
Sbjct: 406 SKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLE 465

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +  +M+  GC      Y T++    +  +++ A   +  M   G+     + N LI
Sbjct: 466 EALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLI 525

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK+    DAA ++  +M   G  PD +TY +L+   C+ G I +A ++ + M +  C
Sbjct: 526 DGLCKSKRVEDAA-QLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGC 584

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P +VTY +LI+GLC++  V+ A RL   ++ KG+      Y+ ++  L K   + +AM 
Sbjct: 585 NPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMR 644

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCK-EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           L + M+ K   P+ +TY  +  GLC   G + EAV+    M  +G  P+   +  +    
Sbjct: 645 LFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGL 704

Query: 342 CDI 344
           C +
Sbjct: 705 CTL 707


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 239/457 (52%), Gaps = 17/457 (3%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T I+  Q+ +L+    D+  ++ +F  A A+   G+ H      L+I KL +   F+  E
Sbjct: 62  TPISPFQLCKLLELPLDIPTSMELFQRAGAQ--KGYSHTFDACYLLIDKLGAVGDFKVIE 119

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF-DKMKEFGCEPTPKSYITVLAI 129
            LL ++  E     E +F+ I + YG+   P  A R+  D    + C+PT KSY  VL I
Sbjct: 120 KLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDI 179

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           LV+ +  ++A   +  M   G+ P V +  V++KALC  S  +D+A  + R+M   GC P
Sbjct: 180 LVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVS-EVDSACSLLRDMAKHGCVP 238

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +S  Y TLI+ LC   ++ EA +L ++M    C P V T+  +I+GLC++  + EA +L 
Sbjct: 239 NSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLL 298

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           + M  +G   +  TY  LM GLC+ G   +A  LL    +K   PN V Y+TL++G    
Sbjct: 299 DRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALL----NKIPNPNTVLYNTLISGYVAS 354

Query: 310 GKLQEAVEIL-DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           G+ +EA ++L + M + G +PDA  +  +I      G    A   L+EMV     PN +T
Sbjct: 355 GRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVIT 414

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +++       ++ G CK      A ++  SM  + +S++++ Y+ LI   CK G+I ++ 
Sbjct: 415 YTI-------LINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEAL 467

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           ++  E+   GC PD  T+++++  L    KM +A  L
Sbjct: 468 QLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSL 504



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 176/330 (53%), Gaps = 1/330 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  TF++MI  LV       A +LL+ +  ++ +     +  +  G+ +  R  +A
Sbjct: 372 GYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEA 431

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + + M   G       Y  ++  L ++  ++ A + +  M   G +P + + N LI  
Sbjct: 432 AEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLING 491

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN   M+ A  ++ +M   G   ++ TY TL++       I +A +L  EM  + C  
Sbjct: 492 LCKNH-KMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPL 550

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +TY  LI  LC++ +VE+ + LFEEM  KG+ P + + + L+ GLC+ G  + A++ L
Sbjct: 551 DNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFL 610

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           Q MI +   P+IVTY++L+NGLCK G +QEA  + ++++ +G++PDA  Y  +IS  C  
Sbjct: 611 QDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHE 670

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           G + +A   L + V  G  PN +TWS+ I 
Sbjct: 671 GMFNDACLLLYKGVDSGFIPNEVTWSILIN 700



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 205/406 (50%), Gaps = 18/406 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  TF+ +I  L  A +   A  LLDR+           +  +  G  R+ +  +A  + 
Sbjct: 274 DVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALL 333

Query: 109 DKMKEFGCEPTPKS--YITVLAILVEENQLKLAFRF-YRHMREIGIQPCVASLNVLIKAL 165
           +K+      P P +  Y T+++  V   + + A    Y +M   G +P   + N++I  L
Sbjct: 334 NKI------PNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGL 387

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            K  G + +A ++  EM  +   P+  TY  LING C+ G++ EA E+   M  K  S  
Sbjct: 388 VK-KGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLN 446

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
            V Y  LI  LC+  ++EEA++LF EM  KG +P+++T++SL++GLCK     +A+ L  
Sbjct: 447 TVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYH 506

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M  +    N VTY+TL++       +Q+A +++D M  +G   D   Y  +I   C  G
Sbjct: 507 DMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTG 566

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
             ++     +EM+  GI P  ++        N ++ GLC+T   N A +    M +R ++
Sbjct: 567 AVEKGLGLFEEMLGKGIFPTIISC-------NILISGLCRTGKVNDALKFLQDMIHRGLT 619

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
            D +TY+SLI   CK G + +++ + ++L  +G  PD  T++ +++
Sbjct: 620 PDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLIS 665



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 208/418 (49%), Gaps = 17/418 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  T+  ++  L    Q   A  LL+++      +  +  +S     GR     D 
Sbjct: 305 GFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPN-TVLYNTLISGYVASGRFEEAKDL 363

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +  ++ M   G EP   ++  ++  LV++  L  A      M     +P V +  +LI  
Sbjct: 364 L--YNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILING 421

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G ++ A +I   M  +G + ++  Y  LI  LC+ G I EA +LF EM  K C P
Sbjct: 422 FCK-QGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKP 480

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            + T+ SLINGLC++  +EEA+ L+ +M  +GV  N  TY++L+          QA +L+
Sbjct: 481 DIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLV 540

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+ +    + +TY+ L+  LCK G +++ + + + M  +G+ P       +IS  C  
Sbjct: 541 DEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRT 600

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           GK  +A  FL +M+  G+TP+ +T+       N+++ GLCK      A  ++  +++  I
Sbjct: 601 GKVNDALKFLQDMIHRGLTPDIVTY-------NSLINGLCKMGHVQEASNLFNKLQSEGI 653

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL-----WDRR 456
             D++TY++LI+  C +G  + +  ++ + V  G +P+E TWS ++  +     W  R
Sbjct: 654 RPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVKKIPWGAR 711



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 134/267 (50%), Gaps = 1/267 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   +   ++ +I  L        A  L   ++ + C      F S+  G  + H+  
Sbjct: 440 AKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKME 499

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ ++  M   G      +Y T++   +  + ++ AF+    M   G      + N LI
Sbjct: 500 EALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLI 559

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           KALCK +G ++    +F EM  +G  P   +   LI+GLCR GK+ +A +  ++M  +  
Sbjct: 560 KALCK-TGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGL 618

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P +VTY SLINGLC+   V+EA  LF +++S+G+ P+  TY++L+   C  G  + A  
Sbjct: 619 TPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACL 678

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKE 309
           LL   +     PN VT+S L+N + K+
Sbjct: 679 LLYKGVDSGFIPNEVTWSILINYIVKK 705



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 142/294 (48%), Gaps = 18/294 (6%)

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLING 235
           K+ ++M + G       +  ++    + G   +A  L  +M    +C PT  +Y  +++ 
Sbjct: 120 KLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDI 179

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           L        A  +F +M S+GV P V+T+  +M  LC       A  LL+ M      PN
Sbjct: 180 LVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPN 239

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
            V Y TL++ LC+  ++ EA+++L+ M L   +PD   +  +I   C  G+  EAA  LD
Sbjct: 240 SVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLD 299

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK---TDPNRAFQVYLSMRNRSISVDSLTYSS 412
            M+L G + + LT+         ++ GLC+    D  RA      + N+  + +++ Y++
Sbjct: 300 RMLLRGFSTDALTYGY-------LMHGLCRMGQVDEARA------LLNKIPNPNTVLYNT 346

Query: 413 LITCFCKKGDIHKSARIV-DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           LI+ +   G   ++  ++ + +V+ G  PD  T++ ++  L  +  +  A ELL
Sbjct: 347 LISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELL 400


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 212/372 (56%), Gaps = 10/372 (2%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           GR HR  +A+ V   M+  GC+P   +Y T++A      ++  A R    MRE G++P +
Sbjct: 169 GRGHRK-EALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNL 227

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N ++  +CK +G M+ A K+F EM   G  PD  +Y TL+ G C++G  +EA  +F 
Sbjct: 228 VTFNSVVNGICK-AGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFA 286

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM  K   P VVT+TSLI+ +C++ ++E A+ L  EMR +G++ N  T+++L+DG CK G
Sbjct: 287 EMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKG 346

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
               A+  ++ M   R +P++V Y+ L+NG C  G++ EA E++  M+ +G+KPD   Y 
Sbjct: 347 FLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYS 406

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
            I+S +C  G    A     +M+  G+ P+ +T+S  IR+       LC+      A  +
Sbjct: 407 TILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRV-------LCEEKRLGDAHVL 459

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           + +M +  +  D +TY+SLI   CK+G++ ++  + DE+V  G LPD  T+S ++  L  
Sbjct: 460 FKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSK 519

Query: 455 RRKMRQAAELLL 466
             + ++A  LL 
Sbjct: 520 SARTKEAQRLLF 531



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 224/444 (50%), Gaps = 11/444 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  TF+ +++ +  A +   A  + D + KE        + ++  GY +V    +A
Sbjct: 222 GLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEA 281

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + VF +M   G  P   ++ +++ ++ +   L+ A    R MRE G+Q    +   LI  
Sbjct: 282 LSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDG 341

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +D A    REM      P    Y  LING C +G++ EA+EL +EME K   P
Sbjct: 342 FCKK-GFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKP 400

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY+++++  C++     A +L ++M   GV P+  TYSSL+  LC+      A  L 
Sbjct: 401 DVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLF 460

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + MIS   +P+ VTY++L++G CKEG ++ A+ + D M   G+ PD   Y  +I+     
Sbjct: 461 KNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKS 520

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN--------TVVQGLC-KTDPNRAFQVY 395
            + +EA   L ++      P  + +   +R            +++G C K   N A +VY
Sbjct: 521 ARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVY 580

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            S+ +R+ ++D   YS LI   C++G++ K+     +++  G  P+  +  +++  L++ 
Sbjct: 581 QSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFE- 639

Query: 456 RKMRQAAELLLLELMNKCVEAEVD 479
           + M   A+ ++ +L+N C  A+ +
Sbjct: 640 KGMVVEADQVIQQLLNCCSLADAE 663



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 173/345 (50%), Gaps = 31/345 (8%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P V + N ++ AL  +  ++ +A + F  M + G  P+ YTY  L+  LC  G   E
Sbjct: 118 GYAPSVLAYNAVLLAL--SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKE 175

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  + ++M    C P  VTY +L+   C++  V+ A RL + MR  G++PN+ T++S+++
Sbjct: 176 ALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVN 235

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G+CK G    A ++   M+ +   P+ V+Y+TL+ G CK G   EA+ +   M  +G+ P
Sbjct: 236 GICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMP 295

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI---------------- 373
           D   +  +I   C  G  + A   + EM   G+  N +T++  I                
Sbjct: 296 DVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAV 355

Query: 374 ------RI------HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
                 RI      +N ++ G C     + A ++   M  + +  D +TYS++++ +CK 
Sbjct: 356 REMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKN 415

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           GD H + ++  +++ +G LPD  T+S+++  L + +++  A  L 
Sbjct: 416 GDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLF 460



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 195/428 (45%), Gaps = 27/428 (6%)

Query: 29  NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88
           ++AL +F   T +   G   D  TF+ +I  +  A     A  L+  + +    + E  F
Sbjct: 279 HEALSVFAEMTRK---GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITF 335

Query: 89  LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
            ++  G+ +     DA+    +M++   +P+   Y  ++       ++  A    R M  
Sbjct: 336 TALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEA 395

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G++P V + + ++ A CKN G   +AF++ ++M   G  PD+ TY +LI  LC   ++ 
Sbjct: 396 KGVKPDVVTYSTILSAYCKN-GDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLG 454

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A  LFK M +    P  VTYTSLI+G C+  +VE A+ L +EM   GV P+V TYS L+
Sbjct: 455 DAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLI 514

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYS---------------TLLNGLCKEGKLQ 313
           +GL K   + +A  LL  +  +   P  + Y                 LL G C +G + 
Sbjct: 515 NGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMN 574

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA ++   +  +    D  +Y  +I   C  G   +A +F  +M+  G  PN  +     
Sbjct: 575 EADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTI--- 631

Query: 374 RIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
               ++++GL  K     A QV   + N     D+    +LI    K+G++     ++  
Sbjct: 632 ----SLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHG 687

Query: 433 LVLDGCLP 440
           +  DG LP
Sbjct: 688 MARDGLLP 695


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 212/376 (56%), Gaps = 9/376 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +FDKM+  GC P   +Y T++    +  ++   F+  R M   G++P + S NV+I 
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC+     + +F +  EM  RG + D  TY TLI G C+ G  ++A  +  EM     +
Sbjct: 284 GLCREGRMKEVSF-VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLT 342

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P+V+TYTSLI+ +C++ ++  AM   ++MR +G+ PN  TY++L+DG  + G  ++A  +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ M      P++VTY+ L+NG C  GK+++A+ +L+ MK +GL PD   Y  ++S FC 
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
                EA     EMV  GI P+ +T+S       +++QG C+    + A  +Y  M    
Sbjct: 463 SYDVDEALRVKREMVEKGIKPDTITYS-------SLIQGFCEQRRTKEACDLYEEMLRVG 515

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D  TY++LI  +C +GD+ K+ ++ +E+V  G LPD  T+S ++  L  + + R+A 
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAK 575

Query: 463 ELLLLELMNKCVEAEV 478
            LLL     + V ++V
Sbjct: 576 RLLLKLFYEESVPSDV 591



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 175/344 (50%), Gaps = 29/344 (8%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P V S N ++ A  ++   +  A  +F+EM     +P+ +TY  LI G C  G I  
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  LF +METK C P VVTY +LI+G C+ + +++  +L   M  KG+EPN+ +Y+ +++
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC+ G   +   +L  M  + +  + VTY+TL+ G CKEG   +A+ +   M   GL P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW-------------------- 369
               Y  +I   C  G    A  FLD+M + G+ PN  T+                    
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 370 --------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
                   S  +  +N ++ G C T     A  V   M+ + +S D ++YS++++ FC+ 
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D+ ++ R+  E+V  G  PD  T+S+++    ++R+ ++A +L
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDL 507



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 216/420 (51%), Gaps = 14/420 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +++++I+ L    + +    +L  +N+    + E  + ++ +GY +      A+ +  +M
Sbjct: 277 SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P+  +Y +++  + +   +  A  F   MR  G+ P   +   L+    +  G 
Sbjct: 337 LRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQ-KGY 395

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           M+ A+++ REM + G +P   TY  LING C  GK+ +A  + ++M+ K  SP VV+Y++
Sbjct: 396 MNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +++G C+S  V+EA+R+  EM  KG++P+  TYSSL+ G C+   + +A +L + M+   
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+  TY+ L+N  C EG L++A+++ + M  +G+ PD   Y  +I+      + +EA 
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAK 575

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHN----------TVVQGLC-KTDPNRAFQVYLSMRN 400
             L ++      P+ +T+  H  I N          ++++G C K     A QV+ SM  
Sbjct: 576 RLLLKLFYEESVPSDVTY--HTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLG 633

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           ++   D   Y+ +I   C+ GDI K+  +  E+V  G L    T  A++ AL    K+ +
Sbjct: 634 KNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNE 693


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/386 (34%), Positives = 214/386 (55%), Gaps = 18/386 (4%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +  S+CR  G   R L+  R   +M   G  PT  +Y T++  L + N+L      +  +
Sbjct: 51  VLQSLCRA-GETARALEIFR--GEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            + G  P V + N LI +LCK +G ++ A ++   M +RGC P+  TY  LINGLC++G+
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCK-AGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGR 166

Query: 207 IYEAKELFKEMETKACS--PTVVTYTSLINGLCQSKSVEEAMRLFEEMR--SKGVEPNVF 262
           I EA+EL +EM  K+C   P ++TY S ++GLC+     EA  L   +R  S  V P+  
Sbjct: 167 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 226

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T+S+L+DGLCK G + +A      MI+  + PN+VTY+ L+NGLCK  K++ A  +++ M
Sbjct: 227 TFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESM 284

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G+ PD   Y  ++  FC   +  EA   L  M   G TPN +T+       N+++ G
Sbjct: 285 VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF-------NSIIDG 337

Query: 383 LCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LCK+D    AFQ+ L + NR +  D +T++ LI   CK G+  +++ + +E+V     PD
Sbjct: 338 LCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPD 397

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLL 467
             T+ A++  L    ++  A ++L L
Sbjct: 398 VMTFGALIDGLCKAGQVEAARDILDL 423



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 187/339 (55%), Gaps = 21/339 (6%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR-EMPNRGCTPDSY 192
           N   L F F R          VA  N+++++LC+ +G    A +IFR EM   G  P   
Sbjct: 29  NLCPLKFFFVRSSSR-----SVADYNIVLQSLCR-AGETARALEIFRGEMARDGVAPTIV 82

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY T+INGLC+  ++    ELF+E+  +   P VVTY +LI+ LC++  +EEA RL   M
Sbjct: 83  TYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGM 142

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR--PNIVTYSTLLNGLCKEG 310
            S+G  PNV TYS L++GLCK G   +A EL+Q M  K     PNI+TY++ L+GLCK+ 
Sbjct: 143 SSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQS 202

Query: 311 KLQEAVEILDRMKLQGLK--PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
              EA E++  ++   L+  PD   +  +I   C  G+  EA N  D+M+ GG  PN +T
Sbjct: 203 MTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVT 260

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       N +V GLCK D   RA  +  SM ++ ++ D +TYS L+  FCK   + ++ 
Sbjct: 261 Y-------NALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEAL 313

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            ++  +   GC P+  T+++++  L    +  +A ++ L
Sbjct: 314 ELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIAL 352



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 215/419 (51%), Gaps = 15/419 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFD 109
           T+S++I+ L    +   A +L+  + ++ CD+  +I  + S   G  +     +A  +  
Sbjct: 153 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 212

Query: 110 KMKEFGCEPTPKS--YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            +++     +P +  + T++  L +  Q   A      M   G  P V + N L+  LCK
Sbjct: 213 SLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCK 270

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
            +  M+ A  +   M ++G TPD  TY  L++  C+  ++ EA EL   M ++ C+P VV
Sbjct: 271 -ADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV 329

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+ S+I+GLC+S    EA ++  ++ ++ + P+  T++ L+ G CK G   QA  L + M
Sbjct: 330 TFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEM 389

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           ++K  +P+++T+  L++GLCK G+++ A +ILD M   G+ P+   Y  ++   C  G+ 
Sbjct: 390 VAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRI 449

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVD 406
           +E   FL+EMV  G  P  +T+        ++V  LC+    + A Q+   +++     D
Sbjct: 450 EEPCEFLEEMVSSGCVPESMTYG-------SLVYALCRASRTDDALQLVSKLKSFGWDPD 502

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++TY+ L+    K G   ++  +++E+V  G  PD  T++A    L     +    ELL
Sbjct: 503 TVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELL 561



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/402 (29%), Positives = 200/402 (49%), Gaps = 50/402 (12%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            M +F+++ + G  P   +Y T++  L +   L+ A R +  M   G  P V + +VLI 
Sbjct: 100 GMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLIN 159

Query: 164 ALCKNSGTMDAAFKIFREMPNRGC------------------------------------ 187
            LCK  G +D A ++ +EM  + C                                    
Sbjct: 160 GLCK-VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGS 218

Query: 188 ---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
              +PD+ T+ TLI+GLC+ G+  EA     +M      P VVTY +L+NGLC++  +E 
Sbjct: 219 LRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMER 276

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A  + E M  KGV P+V TYS L+D  CK     +A+ELL  M S+   PN+VT++++++
Sbjct: 277 AHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIID 336

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           GLCK  +  EA +I  ++  + L PD   +  +I+  C  G +++A+   +EMV   + P
Sbjct: 337 GLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQP 396

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDI 423
           + +T+         ++ GLCK     A +  L  M N  +  + +TY+ L+   CK G I
Sbjct: 397 DVMTFG-------ALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRI 449

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +    ++E+V  GC+P+  T+ +++ AL    +   A +L+
Sbjct: 450 EEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLV 491



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 165/330 (50%), Gaps = 5/330 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHR 100
           A G+  +  T++ +++ L  A++   A  +++ +  +   +T D+  +  +   + +  R
Sbjct: 251 AGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKG--VTPDVITYSVLVDAFCKASR 308

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A+ +   M   GC P   ++ +++  L + ++   AF+    +    + P   + N+
Sbjct: 309 VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNI 368

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   CK +G  + A  +F EM  +   PD  T+G LI+GLC+ G++  A+++   M   
Sbjct: 369 LIAGACK-AGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 427

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P VVTY  L++GLC+S  +EE     EEM S G  P   TY SL+  LC+   +  A
Sbjct: 428 GVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDA 487

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           ++L+  + S    P+ VTY+ L++GL K GK ++A+ +L+ M  +G +PD+  +      
Sbjct: 488 LQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGG 547

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
               G        L  ++  G+ P+  T S
Sbjct: 548 LHRSGNLAGTMELLRVVLAKGMLPDATTCS 577



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 115/201 (57%), Gaps = 1/201 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F++M     +P   ++  ++  L +  Q++ A      M  +G+ P V + NVL+ 
Sbjct: 382 ASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVH 441

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK SG ++   +   EM + GC P+S TYG+L+  LCR  +  +A +L  ++++    
Sbjct: 442 GLCK-SGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWD 500

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY  L++GL +S   E+A+ + EEM  KG +P+ FT+++   GL + G  +  MEL
Sbjct: 501 PDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMEL 560

Query: 284 LQMMISKRHRPNIVTYSTLLN 304
           L+++++K   P+  T S++L+
Sbjct: 561 LRVVLAKGMLPDATTCSSILD 581


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 244/446 (54%), Gaps = 12/446 (2%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W  ++   +++ +I  +++++ AL IF+ A  +Y   F H+  T+  +I KL  A  F P
Sbjct: 55  WPQRLYPKRLVSMITRQQNLDLALQIFEYA-GKYQPNFSHNYDTYDSIIHKLSRARVFGP 113

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
            E LL  ++K +    E+IF+++ R YG   +P  A+R F ++++F  + + +S  T+L 
Sbjct: 114 VELLLSDLHKSQIKCGENIFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLN 173

Query: 129 ILVEENQLKLAFRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
             V+  +  L    +++ R + G+ P V + N+LIKALCK +  +++A K+  EMP  G 
Sbjct: 174 AFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKN-DVESAVKVLDEMPAMGM 232

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            P+  TY T++ G    G +  A ++F E+  +   P   TYT L+NG C+   + +A++
Sbjct: 233 IPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIK 292

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L ++M   GVEPN  TY  +++  CK   + +A  LL  M+ +++ P+      +++ LC
Sbjct: 293 LMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLC 352

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           + GK++EA E+  RM  +   PD  +   +I   C  GK  EA     E   G I P+ L
Sbjct: 353 EAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFERGAI-PSLL 411

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T       +NT++ G+C K + + A +++  M  +    ++ TY+ LI  F K G+  + 
Sbjct: 412 T-------YNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEG 464

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTAL 452
            RI++E++ + C+P++ T++ ++  L
Sbjct: 465 IRILEEMLDNRCMPNKSTYAILIEEL 490



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 128/228 (56%), Gaps = 5/228 (2%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           GY    R  DA+++ D M E G EP   +Y  ++    +E +   A      M E    P
Sbjct: 280 GYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVP 339

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
             A    +I  LC+ +G ++ A ++++ M  + C PD+    TLI+ LC+ GK++EA++L
Sbjct: 340 SSALCCKVIDVLCE-AGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKL 398

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F E E  A  P+++TY +LI G+C+   + EA +L+++M  KG +PN FTY+ L+ G  K
Sbjct: 399 FGEFERGAI-PSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSK 457

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK---EGKLQEAVEI 318
            G + + + +L+ M+  R  PN  TY+ L+  LCK   EG++ + V +
Sbjct: 458 IGNAKEGIRILEEMLDNRCMPNKSTYAILIEELCKMGMEGEVDKVVSM 505



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 155/323 (47%), Gaps = 5/323 (1%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T +++I  L   N    A  +LD +           + +I  GY      ++A +VF ++
Sbjct: 203 TCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGEL 262

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G  P   +Y  ++    E+ +L  A +    M E G++P   +  V+++A CK    
Sbjct: 263 FDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKA 322

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            +A   +  +M  R   P S     +I+ LC  GKI EA EL+K M  K C P     ++
Sbjct: 323 GEAR-NLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMST 381

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+ LC+   V EA +LF E   +G  P++ TY++L+ G+C+ G  S+A +L   M+ K 
Sbjct: 382 LIHWLCKEGKVWEARKLFGEFE-RGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKG 440

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++PN  TY+ L+ G  K G  +E + IL+ M      P+   Y  +I   C +G   E  
Sbjct: 441 YKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAILIEELCKMGMEGEVD 500

Query: 352 NFLD-EMVLGGITPNRLTWSLHI 373
             +   M  GG+  +  +W L +
Sbjct: 501 KVVSMAMASGGVDSD--SWDLFL 521



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 131/305 (42%), Gaps = 58/305 (19%)

Query: 171 TMDAAFKIF----REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
            +D A +IF    +  PN     D  TY ++I+ L R       + L  ++         
Sbjct: 73  NLDLALQIFEYAGKYQPNFSHNYD--TYDSIIHKLSRARVFGPVELLLSDLHKSQIKCGE 130

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
             + ++I     +   + A+R F  ++   V+ +V + ++L++   +    ++  +L+  
Sbjct: 131 NIFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLNAFVQ----NKRYDLVHA 186

Query: 287 MISK-RHR----PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           M    R +    PN+ T + L+  LCK+  ++ AV++                       
Sbjct: 187 MFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKV----------------------- 223

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRN 400
                       LDEM   G+ PN +T++       T++ G   + D   A +V+  + +
Sbjct: 224 ------------LDEMPAMGMIPNVVTYT-------TILGGYSSRGDMVNANKVFGELFD 264

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R    D+ TY+ L+  +C++G +  + +++D++  +G  P+E T+  ++ A    +K  +
Sbjct: 265 RGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGE 324

Query: 461 AAELL 465
           A  LL
Sbjct: 325 ARNLL 329


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 235/453 (51%), Gaps = 13/453 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ-FRPAEDLLDRVNKEKCDITED 86
           +NKAL I + A +    GF     +++ ++  ++   Q  + AE +   + +        
Sbjct: 148 INKALSIVNLAKSY---GFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVY 204

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  + RG+         +  F +M+  GC P   +Y T++    +  ++  AF+  R M
Sbjct: 205 TYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLM 264

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G+ P + S NV+I  LC+  G M    +I  EM  R   PD  T+ TLING C +G 
Sbjct: 265 ALKGLNPNLISYNVVINGLCR-EGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGN 323

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
            ++A  L  EM     SP VVTYT+LIN +C++ ++  AM   ++MR +G+ PN  TY++
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DG  + G   QA ++++ M+     P I+TY+ L+NG C  G++++A  +L  M  +G
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             PD   Y  IIS FC   + ++A     EMV  GI+P+  T+S       +++QGLCK 
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYS-------SLIQGLCKQ 496

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                   ++  M +  +  D +TY+SLI  +C +GD+ K+ R+ DE++  G  PD  T+
Sbjct: 497 RRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTY 556

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           + ++     + + ++A  LLL  L  + V  E+
Sbjct: 557 NVLINGFNKQSRTKEAKRLLLKLLYEESVPNEI 589



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 216/423 (51%), Gaps = 10/423 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +++++I+ L    Q +   ++L+ ++K +       F ++  GY  V     A+ +  +M
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G  P   +Y T++  + +   L  A  F   MR+ G+ P   +   LI    +  G 
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQ-QGF 393

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A++I +EM   G TP   TY  LING C LG++ +A  L +EM  +   P VV+Y++
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYST 453

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+++ +E+A +L  EM +KG+ P+V TYSSL+ GLCK     +  +L Q M+S  
Sbjct: 454 IISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+ VTY++L+N  C EG L +A+ + D M  +G  PD   Y  +I+ F    + +EA 
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 352 NFLDEMVLGGITPNRLTW--------SLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
             L +++     PN +T+        +L  +    +++G C K   N A +V  SM  + 
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
             ++   Y+ +I    K G+I K+  +  E++  G  P   T  A+  +L+   K  +  
Sbjct: 634 YKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELN 693

Query: 463 ELL 465
           +LL
Sbjct: 694 QLL 696



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 185/365 (50%), Gaps = 7/365 (1%)

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
           + C+ +   +  V+      N +  A       +  G  P V S N ++ A+ +   ++ 
Sbjct: 126 YQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVK 185

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
            A  IF+EM   G +P+ YTY  LI G C  G +      F EME   C P VVTY ++I
Sbjct: 186 IAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTII 245

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +  C+ + + EA +L   M  KG+ PN+ +Y+ +++GLC+ G   +  E+L+ M  +R+ 
Sbjct: 246 DAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P+ VT++TL+NG C  G   +A+ +   M   GL P+   Y  +I+  C  G    A  F
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
           LD+M   G+ PN  T++    I     QG  K    +A+Q+   M     +   +TY++L
Sbjct: 366 LDQMRDRGLHPNGRTYT--TLIDGFSQQGFLK----QAYQIMKEMVENGFTPTIITYNAL 419

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           I   C  G +  ++ ++ E++  G +PD  ++S +++     +++ +A + L +E++ K 
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ-LKVEMVAKG 478

Query: 474 VEAEV 478
           +  +V
Sbjct: 479 ISPDV 483



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 126/303 (41%), Gaps = 22/303 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           GF  D  ++S +IS      +   A  L  +V      I+ D+  + S+ +G  +  R  
Sbjct: 443 GFIPDVVSYSTIISGFCRNQELEKAFQL--KVEMVAKGISPDVATYSSLIQGLCKQRRLG 500

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +   +F +M   G  P   +Y +++     E  L  A R +  M + G  P + + NVLI
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLI 560

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN---------------GLCRLGKI 207
               K S T +A  ++  ++      P+  TY TLI+               G C  G +
Sbjct: 561 NGFNKQSRTKEAK-RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLM 619

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  + + M  K        Y  +I+G  +  ++E+A  L++EM   G  P+  T  +L
Sbjct: 620 NEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMAL 679

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL-CKEGKLQEAVEILDRMKLQG 326
              L   G   +  +LL   + K  R      + +L G+  KEG +     +L  M L G
Sbjct: 680 AKSLYHEGKEVELNQLLDYTL-KSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMALSG 738

Query: 327 LKP 329
           L P
Sbjct: 739 LLP 741


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 235/453 (51%), Gaps = 13/453 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ-FRPAEDLLDRVNKEKCDITED 86
           +NKAL I + A +    GF     +++ ++  ++   Q  + AE +   + +        
Sbjct: 148 INKALSIVNLAKSY---GFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVY 204

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  + RG+         +  F +M+  GC P   +Y T++    +  ++  AF+  R M
Sbjct: 205 TYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLM 264

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G+ P + S NV+I  LC+  G M    +I  EM  R   PD  T+ TLING C +G 
Sbjct: 265 ALKGLNPNLISYNVVINGLCR-EGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGN 323

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
            ++A  L  EM     SP VVTYT+LIN +C++ ++  AM   ++MR +G+ PN  TY++
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DG  + G   QA ++++ M+     P I+TY+ L+NG C  G++++A  +L  M  +G
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             PD   Y  IIS FC   + ++A     EMV  GI+P+  T+S       +++QGLCK 
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYS-------SLIQGLCKQ 496

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                   ++  M +  +  D +TY+SLI  +C +GD+ K+ R+ DE++  G  PD  T+
Sbjct: 497 RRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTY 556

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           + ++     + + ++A  LLL  L  + V  E+
Sbjct: 557 NVLINGFNKQSRTKEAKRLLLKLLYEESVPNEI 589



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 216/423 (51%), Gaps = 10/423 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +++++I+ L    Q +   ++L+ ++K +       F ++  GY  V     A+ +  +M
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G  P   +Y T++  + +   L  A  F   MR+ G+ P   +   LI    +  G 
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQ-QGF 393

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A++I +EM   G TP   TY  LING C LG++ +A  L +EM  +   P VV+Y++
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYST 453

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+++ +E+A +L  EM +KG+ P+V TYSSL+ GLCK     +  +L Q M+S  
Sbjct: 454 IISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+ VTY++L+N  C EG L +A+ + D M  +G  PD   Y  +I+ F    + +EA 
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 352 NFLDEMVLGGITPNRLTW--------SLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
             L +++     PN +T+        +L  +    +++G C K   N A +V  SM  + 
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
             ++   Y+ +I    K G+I K+  +  E++  G  P   T  A+  +L+   K  +  
Sbjct: 634 YKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELN 693

Query: 463 ELL 465
           +LL
Sbjct: 694 QLL 696



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 185/365 (50%), Gaps = 7/365 (1%)

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
           + C+ +   +  V+      N +  A       +  G  P V S N ++ A+ +   ++ 
Sbjct: 126 YQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVK 185

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
            A  IF+EM   G +P+ YTY  LI G C  G +      F EME   C P VVTY ++I
Sbjct: 186 IAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTII 245

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +  C+ + + EA +L   M  KG+ PN+ +Y+ +++GLC+ G   +  E+L+ M  +R+ 
Sbjct: 246 DAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P+ VT++TL+NG C  G   +A+ +   M   GL P+   Y  +I+  C  G    A  F
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
           LD+M   G+ PN  T++    I     QG  K    +A+Q+   M     +   +TY++L
Sbjct: 366 LDQMRDRGLHPNGRTYT--TLIDGFSQQGFLK----QAYQIMKEMVENGFTPTIITYNAL 419

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           I   C  G +  ++ ++ E++  G +PD  ++S +++     +++ +A + L +E++ K 
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ-LKVEMVAKG 478

Query: 474 VEAEV 478
           +  +V
Sbjct: 479 ISPDV 483



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 126/303 (41%), Gaps = 22/303 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           GF  D  ++S +IS      +   A  L  +V      I+ D+  + S+ +G  +  R  
Sbjct: 443 GFIPDVVSYSTIISGFCRNQELEKAFQL--KVEMVAKGISPDVATYSSLIQGLCKQRRLG 500

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +   +F +M   G  P   +Y +++     E  L  A R +  M + G  P + + NVLI
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLI 560

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN---------------GLCRLGKI 207
               K S T +A  ++  ++      P+  TY TLI+               G C  G +
Sbjct: 561 NGFNKQSRTKEAK-RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLM 619

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  + + M  K        Y  +I+G  +  ++E+A  L++EM   G  P+  T  +L
Sbjct: 620 NEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMAL 679

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL-CKEGKLQEAVEILDRMKLQG 326
              L   G   +  +LL   + K  R      + +L G+  KEG +     +L  M L G
Sbjct: 680 AKSLYHEGKEVELNQLLDYTL-KSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMALSG 738

Query: 327 LKP 329
           L P
Sbjct: 739 LLP 741


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 250/489 (51%), Gaps = 51/489 (10%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           ++ + V++++R E D+  +L  F S +   +  F+H + T+  MI KL   N+      L
Sbjct: 39  VSESHVVKVLRQEHDIVSSLEYFKSLSN--SGTFKHTHLTYETMIDKLGRNNEMDGVSYL 96

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++  E    ++++F  + + Y R +     +++F +++EFGCEP+ K Y  VL  L+ 
Sbjct: 97  LQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLS 156

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +N  K+    Y +M+  G++P V + NVL+KALC+N G +D A K+  EM N+GC PD  
Sbjct: 157 QNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQN-GKVDGACKLLVEMSNKGCDPDDV 215

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +Y T+I+ +C+LG + +A+EL  + E     P V  Y +LI+G+C+    +EA  L  EM
Sbjct: 216 SYTTVISSMCKLGDVDKARELAMKFE-----PVVPVYNALIHGVCKECRFKEAFDLMNEM 270

Query: 253 RSKGVEPNVFTYS-----------------------------------SLMDGLCKGGCS 277
             +GV+PNV +YS                                   SL+ G    G  
Sbjct: 271 VDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRV 330

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A+ L  +MI +   PN+V Y+TL++GLC +G + EA+ + ++M+   ++P+   Y  I
Sbjct: 331 GDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTI 390

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I  F   G    A    ++M+  G  PN       + ++  +V  LC+    ++AF +  
Sbjct: 391 IYGFAKSGDLVSACETWNKMINCGCRPN-------VVVYTCMVDVLCQMSMFDQAFDLID 443

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
           +M +       +T+++ I   C+ G +  +  ++D++    CLP+  T++ ++  L+   
Sbjct: 444 NMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRAN 503

Query: 457 KMRQAAELL 465
             R+A  L+
Sbjct: 504 AFREACGLI 512



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 189/401 (47%), Gaps = 8/401 (1%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           FD        G   +  ++S +IS L        +  +  R+    C      F S+ +G
Sbjct: 264 FDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKG 323

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           +    R  DA+ +++ M   G  P   +Y T++  L  +  +  A   +  M +  I+P 
Sbjct: 324 FFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPN 383

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           V + + +I    K SG + +A + + +M N GC P+   Y  +++ LC++    +A +L 
Sbjct: 384 VTTYSTIIYGFAK-SGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLI 442

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
             M +  C PTV+T+ + I GLC++  VE AM + ++M      PN+ TY+ L+DGL + 
Sbjct: 443 DNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRA 502

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
               +A  L++ +  ++   + VTY+T++ G    G  Q+ +++L +M + G+K D    
Sbjct: 503 NAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITV 562

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV 394
              ++ +C +GK + A   LD      I+  +  +   I  H  ++ G+C         V
Sbjct: 563 NTTVNAYCKLGKVKTAIKVLD-----NISAEK-EFRADIITHTIILWGICNWLGTEEAVV 616

Query: 395 YL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           YL  M  R I  +  T++ L+  F  K       RI+D+++
Sbjct: 617 YLHEMLKRGIFPNIATWNVLVRGFFSKLGHMGPIRILDDII 657



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           +TY T+++ L +  ++     +L +MKL+ +     L+  +I C+      ++       
Sbjct: 75  LTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYR 134

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSISVDSLTYSSLIT 415
           +   G  P+       ++I+N V+  L   +  +    +Y +M++  +  +  TY+ L+ 
Sbjct: 135 IREFGCEPS-------VKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLK 187

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
             C+ G +  + +++ E+   GC PD+ +++ V++++     + +A EL +
Sbjct: 188 ALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAM 238


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 240/457 (52%), Gaps = 17/457 (3%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
            +I  + VL+ +R E  V  AL  F S     +N F+H   TF +MI KL    Q    +
Sbjct: 38  AEIKESAVLKRLRQESCVPLALHFFKSIAN--SNLFKHTPLTFEVMIRKLAMDGQVDSVQ 95

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL ++  +    +ED+F+S+   Y +V     A+ +F ++KEFGC+P+ K Y  VL  L
Sbjct: 96  YLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTL 155

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           + EN++++ +  YR M+  G +P V + NVL+KALCKN+  +D A K+  EM N+GC P+
Sbjct: 156 LGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNN-KVDGAKKLLVEMSNKGCCPN 214

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           + +Y T+I+ +C +G + E ++L +  E     P V  Y +LINGLC+ +  +  + L  
Sbjct: 215 AVSYTTVISSMCEVGMVKEGRQLAERFE-----PVVSVYNALINGLCKERDYKGGVELMS 269

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EM  KG+ PNV +YS+L++ L   G    A  LL  M+ +   PNI T S+L+ G    G
Sbjct: 270 EMVEKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRG 329

Query: 311 KLQEAVEILDRM-KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
              +A+++ ++M +  GL+P+   Y  ++  FC  G   +A +    M   G +PN    
Sbjct: 330 TTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPN---- 385

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
              IR + +++ G  K      A  ++  M       + + Y+S++   C+     ++  
Sbjct: 386 ---IRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAES 442

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++ +  + C P   T++A +  L D  ++  A ++ 
Sbjct: 443 LIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVF 479



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 170/345 (49%), Gaps = 8/345 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  ++S +I++L ++ Q   A  LL ++ K  C        S+ +G        DA
Sbjct: 275 GISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDA 334

Query: 105 MRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           + ++++M + FG +P   +Y T++        +  A   + HM EIG  P + +   LI 
Sbjct: 335 LDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLIN 394

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
              K  G+++ A  I+ +M   GC P+   Y +++  LCR  K  EA+ L + M  + C+
Sbjct: 395 GFTKR-GSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCA 453

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAME 282
           P+V T+ + I GLC +  ++ A ++F +M  +    PN+ TY+ L+DGL K     +A  
Sbjct: 454 PSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYG 513

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + +  +    +  TY+TLL+G C  G    A++++ +M + G  PD      II  +C
Sbjct: 514 LTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYC 573

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
             GK + A   LD +  G     R  W   +  +  V+ GLC+++
Sbjct: 574 KQGKAERAVQMLDLVSCG-----RRKWRPDVISYTNVIWGLCRSN 613



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 165/331 (49%), Gaps = 11/331 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            + +  +M E G  P   SY T++  L    Q++LAF     M + G  P + +L+ L+K
Sbjct: 264 GVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVK 323

Query: 164 ALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             C   GT   A  ++ +M    G  P+   Y TL+ G C  G I +A  +F  ME   C
Sbjct: 324 G-CFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGC 382

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP + TY SLING  +  S+E A+ ++ +M + G  PNV  Y+S+++ LC+     +A  
Sbjct: 383 SPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAES 442

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-GLKPDAGLYGKIISCF 341
           L+++M  +   P++ T++  + GLC  G+L  A ++  +M+ Q    P+   Y +++   
Sbjct: 443 LIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGL 502

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
               + +EA     E+ + G+      WS     +NT++ G C    P  A Q+   M  
Sbjct: 503 AKANRIEEAYGLTREIFMRGV-----EWS--TSTYNTLLHGSCNAGLPGIALQLVGKMMV 555

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
              S D +T + +I  +CK+G   ++ +++D
Sbjct: 556 NGKSPDEITMNMIILAYCKQGKAERAVQMLD 586



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 127/304 (41%), Gaps = 46/304 (15%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +   ++ ++    S      A  +   + +  C      + S+  G+ +      A
Sbjct: 346 GLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGA 405

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +++KM   GC P    Y +++  L   ++ K A      M +    P V + N  IK 
Sbjct: 406 VYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKG 465

Query: 165 LCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           LC ++G +D A K+FR+M  +  C P+  TY  L++GL +  +I EA  L +E+  +   
Sbjct: 466 LC-DAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVE 524

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG--------------------------- 256
            +  TY +L++G C +     A++L  +M   G                           
Sbjct: 525 WSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQM 584

Query: 257 ----------VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
                       P+V +Y++++ GLC+  C    + L + MIS+R  P       +L  +
Sbjct: 585 LDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILFERMISERIIP-------ILRSV 637

Query: 307 CKEG 310
           C+E 
Sbjct: 638 CQEA 641


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 211/376 (56%), Gaps = 9/376 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+R FD+M++ GC P   +Y T++    +  ++   F   R M   G++P + S NV+I 
Sbjct: 224 ALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN 283

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC+     + +F +  EM  RG + D  TY TLI G C+ G  ++A  +  EM     S
Sbjct: 284 GLCREGRMKEISF-VLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLS 342

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P+V+TYTSLI+ +C++ ++  A    ++MR +G+ PN  TY++L+DG  + G  ++A  +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ MI     P++VTY+ L+NG C  GK+ +A+ +L+ MK +GL PD   Y  ++S FC 
Sbjct: 403 LKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCR 462

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
                EA     +MV  GI P+ +T+S       +++QG C+    + A  ++  M    
Sbjct: 463 SYDVDEALRVKRKMVAKGIKPDTITYS-------SLIQGFCEQRRTKEACDLFDEMLRVG 515

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D  TY++LI  +C +GD+ K+ ++ +E+V  G LPD  T+S ++  L  + + R+A 
Sbjct: 516 LPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAK 575

Query: 463 ELLLLELMNKCVEAEV 478
            LLL     + V ++V
Sbjct: 576 RLLLKLFYEESVPSDV 591



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 196/399 (49%), Gaps = 9/399 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++++I     A     A    DR+ K+ C      + ++  GY ++ +  D   +   M
Sbjct: 207 TYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSM 266

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G EP   SY  V+  L  E ++K        M + G      + N LIK  CK  G 
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCK-EGN 325

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A  +  EM   G +P   TY +LI+ +C+ G +  A E   +M  +   P   TYT+
Sbjct: 326 FHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTT 385

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++G  Q   + EA R+ +EM   G  P+V TY++L++G C  G    A+ +L+ M  K 
Sbjct: 386 LVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKG 445

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++V+YST+L+G C+   + EA+ +  +M  +G+KPD   Y  +I  FC+  + +EA 
Sbjct: 446 LTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEAC 505

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTY 410
           +  DEM+  G+ P+  T++        ++   C + D  +A Q++  M  + +  D +TY
Sbjct: 506 DLFDEMLRVGLPPDEFTYT-------ALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTY 558

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           S LI    K+    ++ R++ +L  +  +P + T+  ++
Sbjct: 559 SVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLI 597



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 215/420 (51%), Gaps = 14/420 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +++++I+ L    + +    +L  +NK    + E  + ++ +GY +      A+ +  +M
Sbjct: 277 SYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P+  +Y +++  + +   +  A  F   MR  G+ P   +   L+    +  G 
Sbjct: 337 LRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQ-KGY 395

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           M+ A+++ +EM + G +P   TY  LING C  GK+ +A  + ++M+ K  +P VV+Y++
Sbjct: 396 MNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYST 455

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +++G C+S  V+EA+R+  +M +KG++P+  TYSSL+ G C+   + +A +L   M+   
Sbjct: 456 VLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVG 515

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+  TY+ L+N  C EG LQ+A+++ + M  +G+ PD   Y  +I+      + +EA 
Sbjct: 516 LPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAK 575

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHN----------TVVQGLC-KTDPNRAFQVYLSMRN 400
             L ++      P+ +T+  H  I N          ++++G C K     A QV+ SM  
Sbjct: 576 RLLLKLFYEESVPSDVTY--HTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLE 633

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           ++   D   Y+ +I   C+ GDI K+  +  E+V  G L    T  A++  L    K+ +
Sbjct: 634 KNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNE 693



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 170/345 (49%), Gaps = 29/345 (8%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P V S N ++ A  ++   +  A  +F+EM     +P+ +TY  LI G C  G +  
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDV 223

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A   F  ME K C P VVTY +LI+G C+ + +++   L   M  KG+EPN+ +Y+ +++
Sbjct: 224 ALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN 283

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC+ G   +   +L  M  + +  + VTY+TL+ G CKEG   +A+ +   M   GL P
Sbjct: 284 GLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSP 343

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW-------------------- 369
               Y  +I   C  G    A  FLD+M + G+ PN  T+                    
Sbjct: 344 SVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 370 --------SLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
                   S  +  +N ++ G C       A  V   M+ + ++ D ++YS++++ FC+ 
Sbjct: 404 KEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRS 463

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            D+ ++ R+  ++V  G  PD  T+S+++    ++R+ ++A +L 
Sbjct: 464 YDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLF 508



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 137/288 (47%), Gaps = 20/288 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRP 101
           NGF     T++ +I+    A +   A  +L+ + KEK  +T D+  + ++  G+ R +  
Sbjct: 409 NGFSPSVVTYNALINGHCIAGKMVDAIAVLEDM-KEK-GLTPDVVSYSTVLSGFCRSYDV 466

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A+RV  KM   G +P   +Y +++    E+ + K A   +  M  +G+ P   +   L
Sbjct: 467 DEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTAL 526

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I A C   G +  A ++  EM  +G  PD  TY  LINGL +  +  EAK L  ++  + 
Sbjct: 527 INAYCM-EGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEE 585

Query: 222 CSPTVVTY---------------TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
             P+ VTY                SLI G C    + EA ++FE M  K  +P+   Y+ 
Sbjct: 586 SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNV 645

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           ++ G C+GG   +A  L + M+      + VT   L+  L KEGK+ E
Sbjct: 646 MIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNE 693


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 209/388 (53%), Gaps = 9/388 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F ++  G     + +DA+++FD+M + G EP   +Y T++  L +     +A +  + M 
Sbjct: 13  FNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKME 72

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G +P V + N +I +LCK+   +  A   F EM   G  PD +TY ++++G C LG++
Sbjct: 73  EKGCKPNVVAYNTIIDSLCKDR-LVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRV 131

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  LFK+M  +   P  VT+T LI+GLC+ + + EA  +FE M  KG+EP+V+TY++L
Sbjct: 132 NEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNAL 191

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG C      +A +L  +M  K   PN+ +Y+ L+NG CK G++ EA  +L  M  + L
Sbjct: 192 VDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSL 251

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            PD   Y  ++  FC +G+ QEA   L EM   G+ PN +T+S+       V+ GLCK  
Sbjct: 252 TPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSI-------VLDGLCKHG 304

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + AF++  +M+   I  +   Y+ LI   C  G +  +  +   L + G  P   T++
Sbjct: 305 HLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYT 364

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCV 474
            +++ L       +A EL     +N C+
Sbjct: 365 VMISGLLKGGLSNEACELFREMAVNGCL 392



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/321 (35%), Positives = 181/321 (56%), Gaps = 9/321 (2%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M ++G+QP + + N L+  LC  +  MDA  K+F EM   G  PD  TY T+INGLC++G
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAV-KLFDEMVKMGHEPDVITYSTIINGLCKMG 59

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
               A +L K+ME K C P VV Y ++I+ LC+ + V EAM  F EM  +G+ P+VFTYS
Sbjct: 60  NTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           S++ G C  G  ++A  L + M+ +   PN VT++ L++GLCK+  + EA  + + M  +
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK 179

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GL+PD   Y  ++  +C   +  EA    + M   G  PN       +R +N ++ G CK
Sbjct: 180 GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPN-------VRSYNILINGHCK 232

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +   + A  +   M ++S++ D  TYS+L+  FC+ G   ++  ++ E+   G LP+  T
Sbjct: 233 SGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLIT 292

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S V+  L     + +A ELL
Sbjct: 293 YSIVLDGLCKHGHLDEAFELL 313



 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 221/444 (49%), Gaps = 15/444 (3%)

Query: 6   MFKWS---TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           MFK     T +T   +L  + ++  +  A+ +FD        G   D  T+S +I+ L  
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKM---GHEPDVITYSTIINGLCK 57

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
                 A  LL ++ ++ C      + +I     +     +AM  F +M + G  P   +
Sbjct: 58  MGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFT 117

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y ++L       ++  A   ++ M E  + P   +  +LI  LCK    +  A+ +F  M
Sbjct: 118 YSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKR-MISEAWLVFETM 176

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             +G  PD YTY  L++G C   ++ EA++LF  M+ K C+P V +Y  LING C+S  +
Sbjct: 177 TEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRI 236

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           +EA  L  EM  K + P++FTYS+LM G C+ G   +A ELL+ M S    PN++TYS +
Sbjct: 237 DEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIV 296

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           L+GLCK G L EA E+L  M+   ++P+  +Y  +I   C  GK + A      + + GI
Sbjct: 297 LDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGI 356

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P  +T+++       ++ GL K    N A +++  M       +S TY+ +I  F + G
Sbjct: 357 QPTVVTYTV-------MISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNG 409

Query: 422 DIHKSARIVDELVLDGCLPDEGTW 445
           D   + R+++E+V  G   D  T+
Sbjct: 410 DTPNAVRLIEEMVGKGFSADSSTF 433



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 194/393 (49%), Gaps = 20/393 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPL 102
           G + +   ++ +I  L        A D    + KE   I  D+F   SI  G+  + R  
Sbjct: 75  GCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKE--GIPPDVFTYSSILHGFCNLGRVN 132

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +F +M E    P   ++  ++  L ++  +  A+  +  M E G++P V + N L+
Sbjct: 133 EATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALV 192

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C  S  MD A K+F  M  +GC P+  +Y  LING C+ G+I EAK L  EM  K+ 
Sbjct: 193 DGYCSRS-QMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSL 251

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P + TY++L+ G CQ    +EA  L +EM S G+ PN+ TYS ++DGLCK G   +A E
Sbjct: 252 TPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFE 311

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M   +  PNI  Y+ L+ G+C  GKL+ A E+   + ++G++P    Y  +IS   
Sbjct: 312 LLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLL 371

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
             G   EA     EM + G  PN  T+       N ++QG  +  D   A ++   M  +
Sbjct: 372 KGGLSNEACELFREMAVNGCLPNSCTY-------NVIIQGFLRNGDTPNAVRLIEEMVGK 424

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             S DS T+  L        D+  S  I+ + +
Sbjct: 425 GFSADSSTFRML-------SDLESSDEIISQFM 450



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 172/344 (50%), Gaps = 4/344 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V +A+  F     E   G   D  T+S ++    +  +   A  L  ++ +      +  
Sbjct: 96  VTEAMDFFSEMVKE---GIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVT 152

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  +  G  +     +A  VF+ M E G EP   +Y  ++      +Q+  A + +  M 
Sbjct: 153 FTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMD 212

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G  P V S N+LI   CK SG +D A  +  EM ++  TPD +TY TL+ G C++G+ 
Sbjct: 213 RKGCAPNVRSYNILINGHCK-SGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRP 271

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA+EL KEM +    P ++TY+ +++GLC+   ++EA  L + M+   +EPN+F Y+ L
Sbjct: 272 QEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTIL 331

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++G+C  G    A EL   +  K  +P +VTY+ +++GL K G   EA E+   M + G 
Sbjct: 332 IEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGC 391

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
            P++  Y  II  F   G    A   ++EMV  G + +  T+ +
Sbjct: 392 LPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRM 435



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 121/306 (39%), Gaps = 74/306 (24%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           K+T   ++  +  ++ +++A ++F++ T +   G   D  T++ ++    S +Q   A+ 
Sbjct: 150 KVTFTILIDGLCKKRMISEAWLVFETMTEK---GLEPDVYTYNALVDGYCSRSQMDEAQK 206

Query: 72  LLDRVNKEKC---------------------------------DITEDIFL--SICRGYG 96
           L + ++++ C                                  +T DIF   ++ RG+ 
Sbjct: 207 LFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFC 266

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI------- 149
           +V RP +A  +  +M  +G  P   +Y  VL  L +   L  AF   + M+E        
Sbjct: 267 QVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIF 326

Query: 150 ----------------------------GIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
                                       GIQP V +  V+I  L K  G  + A ++FRE
Sbjct: 327 IYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLK-GGLSNEACELFRE 385

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M   GC P+S TY  +I G  R G    A  L +EM  K  S    T+  L +     + 
Sbjct: 386 MAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSDLESSDEI 445

Query: 242 VEEAMR 247
           + + MR
Sbjct: 446 ISQFMR 451


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 255/518 (49%), Gaps = 77/518 (14%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           +K + +   KIT  Q+ +L+    DV  ++ IF  A A+   G+ H  S + L+I KL +
Sbjct: 59  LKELRRSFNKITPFQLCKLLELPLDVETSMEIFKWAGAQ--KGYCHSFSVYYLLIDKLGA 116

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPK 121
           A  F+  + LL ++ +E     E +F+ I + YGR   P  A R+   MK  + CEP+ +
Sbjct: 117 AAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFR 176

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC--------------- 166
           SY  VL +LV  N   +A   +  M   G+ P   +  +++KALC               
Sbjct: 177 SYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDM 236

Query: 167 ------KNS-------------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
                  NS               +D A K+  EM   GC PD  T+ T+I G CRL ++
Sbjct: 237 TKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRV 296

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL------------------- 248
            E  +L   M  K  +P  +TY  L++GLC++  ++EA  L                   
Sbjct: 297 LEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGF 356

Query: 249 -------------FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
                        +++M + G  P+VFT+S+L++GLCK G    A+EL+  M +K  +PN
Sbjct: 357 VRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPN 416

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           + TY+ L++G CK+G+L+EA  IL  M  +G   +   Y  +IS  C  GK  EA +   
Sbjct: 417 LNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFG 476

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLI 414
           EM   G  P+  T+       N+++ GLC+ D    A  +Y  M    +  +S+T+++LI
Sbjct: 477 EMSSKGCKPDIFTF-------NSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLI 529

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             F ++G+I ++ ++V++++  GC  DE T++ ++ AL
Sbjct: 530 HAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKAL 567



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 219/459 (47%), Gaps = 41/459 (8%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           +  +I  L   ++   A  LL+ +    C    + F ++  G+ R++R L+  ++ D+M 
Sbjct: 248 YQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMI 307

Query: 113 EFGCEPTPKSY-------------------------------ITVLAILVEENQLKLAFR 141
             G  P   +Y                                T++   V   +L  A  
Sbjct: 308 LKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATA 367

Query: 142 F-YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           F Y  M   G  P V + + L+  LCK  G   +A ++  +M  +GC P+  TY  LI+G
Sbjct: 368 FVYDKMINNGYVPDVFTFSTLVNGLCK-KGLFGSALELVNDMDAKGCKPNLNTYTILIDG 426

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C+ G++ EA  + +EM TK  S   V Y +LI+ LC+   + EA+ +F EM SKG +P+
Sbjct: 427 FCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPD 486

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           +FT++SL+ GLC+      A+ L + M+ +    N VT++TL++   + G++QEA+++++
Sbjct: 487 IFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVN 546

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M  +G   D   Y  +I   C  G  ++     +EM+  G+TP+ +T        N ++
Sbjct: 547 DMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITC-------NILI 599

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            G C     + A +    M +R  S D +TY+SLI   CK+G I ++  + ++L  +G  
Sbjct: 600 NGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQ 659

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           PD  T++ ++  L        A  LL   + N  V  +V
Sbjct: 660 PDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDV 698



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 221/455 (48%), Gaps = 39/455 (8%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   ++ TF L++  L   N+   A  LL  + K  C     I+ ++     +  R  
Sbjct: 203 SKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVD 262

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVL------------AILVEENQLK------LAFRFYR 144
           +A+++ ++M   GC P   ++ TV+            A LV+   LK      + + +  
Sbjct: 263 EALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLM 322

Query: 145 H-------------MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           H             +      P V   N L+    +N    +A   ++ +M N G  PD 
Sbjct: 323 HGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDV 382

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           +T+ TL+NGLC+ G    A EL  +M+ K C P + TYT LI+G C+   +EEA  +  E
Sbjct: 383 FTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILRE 442

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M +KG   N   Y++L+  LCK G   +A+++   M SK  +P+I T+++L+ GLC+  +
Sbjct: 443 MLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDE 502

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +++A+ +   M L+G+  ++  +  +I  F   G+ QEA   +++M+  G   + +T+  
Sbjct: 503 MEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITY-- 560

Query: 372 HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                N +++ LCKT    +   ++  M  + ++   +T + LI  FC  G +H +   +
Sbjct: 561 -----NGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFM 615

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +++  G  PD  T+++++  L  R ++++A  L 
Sbjct: 616 RDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLF 650



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 179/330 (54%), Gaps = 1/330 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG+  D  TFS +++ L     F  A +L++ ++ + C    + +  +  G+ +  +  +
Sbjct: 376 NGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEE 435

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +  +M   G       Y  +++ L +  ++  A   +  M   G +P + + N LI 
Sbjct: 436 AGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIF 495

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC+    M+ A  ++R+M   G   +S T+ TLI+   R G+I EA +L  +M  + C 
Sbjct: 496 GLCR-VDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCP 554

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              +TY  LI  LC++ +VE+ + LFEEM  KG+ P++ T + L++G C  G    A+E 
Sbjct: 555 LDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEF 614

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           ++ MI +   P+IVTY++L+NGLCK G++QEA+ + ++++ +G++PD+  Y  +I   C 
Sbjct: 615 MRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCR 674

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            G + +A   L   V  G  PN +TW++ +
Sbjct: 675 EGAFDDACFLLYRGVENGFVPNDVTWNILV 704



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 213/407 (52%), Gaps = 14/407 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  ++ T+  ++  L    +   A+ LL +V     ++    F ++  G+ R  R  +A
Sbjct: 310 GFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGP--NVVH--FNTLVNGFVRNGRLNEA 365

Query: 105 MR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              V+DKM   G  P   ++ T++  L ++     A      M   G +P + +  +LI 
Sbjct: 366 TAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILID 425

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G ++ A  I REM  +G + ++  Y  LI+ LC+ GKI+EA ++F EM +K C 
Sbjct: 426 GFCK-KGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCK 484

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P + T+ SLI GLC+   +E+A+ L+ +M  +GV  N  T+++L+    + G   +A++L
Sbjct: 485 PDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKL 544

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M+ +    + +TY+ L+  LCK G +++ + + + M  +GL P       +I+ FC 
Sbjct: 545 VNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCT 604

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
            GK   A  F+ +M+  G +P+ +T+       N+++ GLCK      A  ++  ++   
Sbjct: 605 AGKVHNALEFMRDMIHRGFSPDIVTY-------NSLINGLCKRGRIQEALNLFEKLQAEG 657

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           I  DS+TY++LI   C++G    +  ++   V +G +P++ TW+ ++
Sbjct: 658 IQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILV 704



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 1/265 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +   ++ +IS L    +   A D+   ++ + C      F S+  G  RV    DA
Sbjct: 447 GFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDA 506

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + ++  M   G      ++ T++   +   +++ A +    M   G      + N LIKA
Sbjct: 507 LALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKA 566

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +G ++    +F EM  +G TP   T   LING C  GK++ A E  ++M  +  SP
Sbjct: 567 LCK-TGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSP 625

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VTY SLINGLC+   ++EA+ LFE+++++G++P+  TY++L+  LC+ G    A  LL
Sbjct: 626 DIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLL 685

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKE 309
              +     PN VT++ L+    K+
Sbjct: 686 YRGVENGFVPNDVTWNILVYNFGKQ 710



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 139/298 (46%), Gaps = 30/298 (10%)

Query: 203 RLGKIYEAKELFKEME-TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           R G   +A  L  +M+    C P+  +Y  +++ L        A  +F +M SKGV PN 
Sbjct: 151 RAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPND 210

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
           +T+  +M  LC       A  LL+ M      PN + Y TL++ L K  ++ EA+++L+ 
Sbjct: 211 YTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEE 270

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------- 374
           M L G  PD   +  +I  FC + +  E A  +D M+L G TPN +T+   +        
Sbjct: 271 MFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCR 330

Query: 375 ----------------IH-NTVVQGLCKT---DPNRAFQVYLSMRNRSISVDSLTYSSLI 414
                           +H NT+V G  +    +   AF VY  M N     D  T+S+L+
Sbjct: 331 IDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAF-VYDKMINNGYVPDVFTFSTLV 389

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
              CKKG    +  +V+++   GC P+  T++ ++     + ++ +A  L+L E++ K
Sbjct: 390 NGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAG-LILREMLTK 446


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 226/437 (51%), Gaps = 36/437 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  +++ +++ L  + ++  A  +L+++ ++KC      + S+  G+ +V +  +A
Sbjct: 227 GREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEA 286

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+ + M    C PT  +Y T++      ++L  A+R    M + GI P + + N L+  
Sbjct: 287 ERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDG 346

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +G ++ A ++   M  + C PD  TY  L+NGLC+LGK+ +A+ L + M  + C P
Sbjct: 347 LCK-AGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQP 405

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VT+ ++I+G C++  V+E  ++ E M+     P+V TYS+L+DG CK      A  +L
Sbjct: 406 NLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL 465

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +       P+  +YS++L GLC  GK++EA E++D M  QG  P +  Y  II   CD+
Sbjct: 466 GI------SPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDV 519

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIR----------------------------IH 376
            +  EA   L  M   G  PN  T+S+ I                              +
Sbjct: 520 ERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATY 579

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            +++ G CK +  + A+Q + +MR+     D L Y+ LI+ FC+ G++ K+  ++  ++ 
Sbjct: 580 TSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLE 639

Query: 436 DGCLPDEGTWSAVMTAL 452
            GC PD  T+ ++M +L
Sbjct: 640 KGCNPDAATYFSLMRSL 656



 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/417 (31%), Positives = 227/417 (54%), Gaps = 13/417 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D + ++ +I+ L    +   A ++L  + +  C      + S+  G  + +   +A ++ 
Sbjct: 126 DAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLM 185

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           +KMKE G  P   +Y  +L  L ++NQL+   +    M E G +P   S N ++  LC+ 
Sbjct: 186 EKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCE- 244

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG  + A KI  +M  + C PD  TY +L++G C++ K+ EA+ L ++M  + C+PTV+T
Sbjct: 245 SGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVIT 304

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT+LI G  ++  + +A R+ E+M   G+ P++ TY+ L+DGLCK G   +A ELL++M+
Sbjct: 305 YTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMV 364

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K   P++VTYS L+NGLCK GK+ +A  +L+ M  +G +P+   +  +I  FC  GK  
Sbjct: 365 EKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVD 424

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL 408
           E    L+ M     TP+ +T+S       T++ G CK   NR    +  +    IS D  
Sbjct: 425 EGHKVLELMKEVSCTPDVVTYS-------TLIDGYCKA--NRMQDAFAIL---GISPDKA 472

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +YSS++   C  G + ++  ++D +   GC P    ++ ++  L D  +  +A ++L
Sbjct: 473 SYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKML 529



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 199/378 (52%), Gaps = 13/378 (3%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G+ R       + + ++M      P   ++ T+L    +   L  A   +R   ++   P
Sbjct: 33  GFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFRG--KMWCSP 90

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
              +  +LI  LC+    +D A+++  EM  + C PD+  Y  LI GLC++GKI  A+ +
Sbjct: 91  TAFTYCILIHGLCQCQ-RIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNV 149

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            K M  ++C P V+TYTSLI G CQ+ +++EA +L E+M+  G+ P+   Y++L++GLCK
Sbjct: 150 LKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCK 209

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                +  +LL+ M+     P+  +Y+T++  LC+ GK +EA +IL++M  +   PD   
Sbjct: 210 QNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVT 269

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAF 392
           Y  ++  FC + K  EA   L++MV     P  +T++       T++ G  + D    A+
Sbjct: 270 YNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYT-------TLIGGFSRADRLADAY 322

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +V   M    IS D +TY+ L+   CK G + ++  +++ +V   C PD  T+S ++  L
Sbjct: 323 RVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGL 382

Query: 453 WDRRKMRQAAELLLLELM 470
               K+  A   LLLE+M
Sbjct: 383 CKLGKVDDAR--LLLEMM 398



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 155/325 (47%), Gaps = 41/325 (12%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA------------- 221
            +  FRE  +    P + TYG LI G  R G      E+  EM  +              
Sbjct: 8   GYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILK 67

Query: 222 --------------------CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
                               CSPT  TY  LI+GLCQ + ++EA +L +EM  K   P+ 
Sbjct: 68  AYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDA 127

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             Y+ L+ GLCK G    A  +L+MM+ +   P+++TY++L+ G C+   L EA +++++
Sbjct: 128 AVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEK 187

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           MK  GL PD   Y  +++  C   + +E +  L+EMV  G  P+  ++       NTVV 
Sbjct: 188 MKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSY-------NTVVA 240

Query: 382 GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            LC++     A ++   M  +    D +TY+SL+  FCK   + ++ R+++++V   C P
Sbjct: 241 CLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAP 300

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
              T++ ++       ++  A  ++
Sbjct: 301 TVITYTTLIGGFSRADRLADAYRVM 325



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 7/265 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  TF+ MI     A +      +L+ + +  C      + ++  GY + +R  DA
Sbjct: 402 GCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDA 461

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +       G  P   SY ++L  L    +++ A      M + G  P  +   ++I  
Sbjct: 462 FAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGG 515

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC +    D A K+ + M  RGC P+ YTY  LINGLC+  ++ +A  +   M  K C P
Sbjct: 516 LC-DVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVP 574

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TYTSLI+G C+   ++ A + F+ MR  G EP+   Y+ L+ G C+ G   +A+E++
Sbjct: 575 DVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVM 634

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKE 309
           Q+M+ K   P+  TY +L+  L  E
Sbjct: 635 QLMLEKGCNPDAATYFSLMRSLTTE 659



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 140/268 (52%), Gaps = 14/268 (5%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           E    F+E  +    P+  TY +LI G  ++ + +  + +  EM ++   P+V T+++++
Sbjct: 7   EGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL 66

Query: 269 DGLCKGGCSSQAMELL--QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
              C+ G   +A+     +M  S    P   TY  L++GLC+  ++ EA ++LD M  + 
Sbjct: 67  KAYCQIGDLDRALSHFRGKMWCS----PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKD 122

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             PDA +Y  +I+  C +GK   A N L  M+     P+ +T++       +++ G C+T
Sbjct: 123 CHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYT-------SLIVGCCQT 175

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
           +  + A ++   M+   ++ D++ Y++L+   CK+  + + +++++E+V  G  PD  ++
Sbjct: 176 NALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSY 235

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKC 473
           + V+  L +  K  +A ++L   +  KC
Sbjct: 236 NTVVACLCESGKYEEAGKILEKMIEKKC 263



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT- 386
           KP    YG +I+ F   G  +      +EM+    +P+ +T       HNT+++  C+  
Sbjct: 21  KPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVIT-------HNTILKAYCQIG 73

Query: 387 DPNRAFQVYLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
           D +RA   +   R +   S  + TY  LI   C+   I ++ +++DE++   C PD   +
Sbjct: 74  DLDRALSHF---RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVY 130

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKCV 474
           + ++  L    K+  A  +L + L   CV
Sbjct: 131 NCLIAGLCKMGKIDAARNVLKMMLERSCV 159


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 152/499 (30%), Positives = 251/499 (50%), Gaps = 47/499 (9%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           QV  ++ +++D   AL  F  A   +   +RHD+S + +M+  L      + A+ +L  +
Sbjct: 215 QVCAVLLSQEDERNALRFFYWADRLWR--YRHDSSVYLVMLEILSKTKLCQGAKRILRLM 272

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
            + +  +  + F  +   Y R  R  DAM+V   M++ G EP      T + ILV  N+L
Sbjct: 273 TRRRIQLCPEAFGFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNEL 332

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           K A RF   M  IGI P V + N LIK  C N   +D A ++  +MP++GC+PD  +Y T
Sbjct: 333 KKALRFAERMVLIGIAPNVVTYNCLIKGYC-NVHQVDQAMELIDQMPSKGCSPDKVSYYT 391

Query: 197 LINGLCRLGKIYEAKELFKEMETKA-CSPTVVTYTSLINGL------------------- 236
           ++  LCR  ++ E +EL K+M+T +   P  VTY SLI  L                   
Sbjct: 392 VMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKL 451

Query: 237 ----------------CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                           C+   +++A  L  EM SKG +P+V TY+S++DG C+ G   QA
Sbjct: 452 RFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQA 511

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +++Q M     +PN VTY+T LNGLC+ GK  EA ++++  + +   P+A  Y  ++  
Sbjct: 512 KKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHG 571

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
               GK  EA + + EM+  G  PN +  +L       +V  LC+   P  A Q+     
Sbjct: 572 LRREGKLNEACDVVREMIGKGFFPNPVEINL-------LVHSLCRDGKPREANQLLKECM 624

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N+  +V+ + ++++I  FC+K D+  +  ++D++ L    PD  T++A++ AL    ++ 
Sbjct: 625 NKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIE 684

Query: 460 QAAELLLLELMNKCVEAEV 478
           +A EL +  L    V + V
Sbjct: 685 EATELTMKMLRQGLVPSPV 703



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 167/349 (47%), Gaps = 9/349 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +  + ++   +     Y  ++    +E +++ A      M   G  P V +   ++
Sbjct: 440 EALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVL 499

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+  G +D A K+ ++M    C P++ TY T +NGLCR GK  EA+++    E +  
Sbjct: 500 DGFCR-IGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWW 558

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P  +TY+ +++GL +   + EA  +  EM  KG  PN    + L+  LC+ G   +A +
Sbjct: 559 TPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQ 618

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+  ++K    N+V ++T+++G C++  L+ A+ +LD M L    PD   Y  +I    
Sbjct: 619 LLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALA 678

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
              + +EA     +M+  G+ P+ +T+     IH    +G  +       ++ L  R ++
Sbjct: 679 KTDRIEEATELTMKMLRQGLVPSPVTY--RSVIHQYCRKGRVEDLLKLLKKMLLKSRFQT 736

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
                  Y+ +I   CK G + ++  ++ E++      D  T   +M +
Sbjct: 737 ------AYNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMES 779



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 159/344 (46%), Gaps = 9/344 (2%)

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
           + V A+L+ +   + A RF+     +      +S+ +++  +   +     A +I R M 
Sbjct: 214 LQVCAVLLSQEDERNALRFFYWADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRILRLMT 273

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
            R        +G ++    R G++ +A ++   M+     P +    + I+ L     ++
Sbjct: 274 RRRIQLCPEAFGFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELK 333

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           +A+R  E M   G+ PNV TY+ L+ G C      QAMEL+  M SK   P+ V+Y T++
Sbjct: 334 KALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVM 393

Query: 304 NGLCKEGKLQEAVEILDRMKLQG-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
             LC++ +L E  E++ +M+    L PD   Y  +I      G   EA   L E      
Sbjct: 394 GLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQE------ 447

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
              +L + +    ++ +V   CK     +A ++   M ++    D +TY+S++  FC+ G
Sbjct: 448 -AEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIG 506

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + ++ +++ ++    C P+  T++  +  L    K  +A +++
Sbjct: 507 KLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMM 550



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 152/369 (41%), Gaps = 38/369 (10%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           ++ G   D  T++ ++       +   A+ ++ ++ K  C      + +   G  R  + 
Sbjct: 484 FSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKS 543

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           L+A ++ +  +E    P   +Y  V+  L  E +L  A    R M   G  P    +N+L
Sbjct: 544 LEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLL 603

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           + +LC++ G    A ++ +E  N+GC  +   + T+I+G C+   +  A  L  +M    
Sbjct: 604 VHSLCRD-GKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCN 662

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM------------- 268
             P  VTYT+LI+ L ++  +EEA  L  +M  +G+ P+  TY S++             
Sbjct: 663 KHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDLL 722

Query: 269 --------------------DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
                               + LCK G   +A  LL  ++    R +  T   L+     
Sbjct: 723 KLLKKMLLKSRFQTAYNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLN 782

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G    A ++  RM  + L PD  L  K+       GK +EA    D +VL  +    ++
Sbjct: 783 VGIPMSAYKVACRMFNRNLIPDLKLCEKVSKRLVVEGKLEEA----DRLVLRFVERGHVS 838

Query: 369 WSLHIRIHN 377
                 +HN
Sbjct: 839 AQEPKHLHN 847


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 151/502 (30%), Positives = 252/502 (50%), Gaps = 50/502 (9%)

Query: 8    KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNST--------------- 52
            +++ K+T+  V ++++  ++ + AL  FD AT++   G+ HD  T               
Sbjct: 804  RFTGKLTTTVVGKVLQGVRNGDAALGFFDWATSQ--EGYNHDTYTCNCLLQALLRLKRPK 861

Query: 53   ------------------FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--IC 92
                              F+++I  L  A     A +LL  + +    + +++ L   + 
Sbjct: 862  DALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHG--VPQNVILHNVVI 919

Query: 93   RGYGRVHRPLDAMRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151
            +G     +   A+ +F +M+E G C P   +Y T++  LV+  ++  A R    M   G 
Sbjct: 920  KGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGC 979

Query: 152  QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
             P V + + L+  LCK +G +D A  + + M   GC+P+  TY T+I+G C+LG+I EA 
Sbjct: 980  SPNVVTYSSLLHGLCK-AGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAY 1038

Query: 212  ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
             L +EM    C P VVTYT L++  C+    E+A+ L E M  KG  PN+FTY+SL+D  
Sbjct: 1039 HLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMF 1098

Query: 272  CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
            CK     +A +LL  MI K   PN+V+Y+T++ GLCK  K+ E V +L++M      PD 
Sbjct: 1099 CKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDI 1158

Query: 332  GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRA 391
              +  II   C   +   A    + +   G TPN +T+       N++V GLCK+     
Sbjct: 1159 VTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTY-------NSLVHGLCKSRRFDQ 1211

Query: 392  FQVYLS--MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
             +  L    R +  S D +TY+++I   CK   + ++ ++  +++ DG  PD+ T+S V+
Sbjct: 1212 AEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVI 1271

Query: 450  TALWDRRKMRQAAELLLLELMN 471
            ++L   R M +A  +L L L N
Sbjct: 1272 SSLCKWRFMDEANNVLELMLKN 1293



 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/445 (30%), Positives = 234/445 (52%), Gaps = 14/445 (3%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D   ALV F+   AE  +G++H+    + +++ LV A+Q+  A DL     + +      
Sbjct: 105 DPGAALVFFE--WAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTV 162

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + ++  G+ R  + L A  +FD+M   G +     + ++L  L +  Q   A   +R M
Sbjct: 163 TYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM 222

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            +    P   + N +I  L K S  +D A ++  EM + G  P+ ++Y T+++G C+  +
Sbjct: 223 SKT-CPPDSVTYNTMINGLSK-SDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANR 280

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A  L ++M T+ C P VV+YT++INGLC+   V+EA R+ ++M  +G +PNV TY +
Sbjct: 281 VENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGT 340

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DG C+ G    A+EL++ M  + +RPN +TY+ +++  C+   ++ A ++L  M   G
Sbjct: 341 LVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTG 400

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             PDA  Y  IIS FC  GK +EA + L++M+  G  P+       +   +T++  LCK 
Sbjct: 401 CPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPD-------VACLSTLIDALCKA 453

Query: 387 DPNRAFQVYLSMR-NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
               + Q  L M      + D + YS LI   CK   + ++   +D +V + C PD  T+
Sbjct: 454 AAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTY 513

Query: 446 SAVMTALWDRRKMRQAAELLLLELM 470
           ++V+  L   R++  A   LL + M
Sbjct: 514 NSVVDGLCKSRRINDA--FLLFDRM 536



 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 216/425 (50%), Gaps = 11/425 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D+ T++ MI+ L  +++   A  LL+ +           + ++  G+ + +R  +A+ + 
Sbjct: 229 DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 288

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M   GC P   SY TV+  L + +Q+  A R    M + G QP V +   L+   C+ 
Sbjct: 289 EQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR- 347

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D A ++ R+M  RG  P++ TY  +++  CR   +  A ++ + M    C P  + 
Sbjct: 348 VGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAIN 407

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y+++I+G C++  + EA  L E+M  +G  P+V   S+L+D LCK      A ELL+M I
Sbjct: 408 YSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSI 467

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                P++V YS L++ LCK  +L EA   LD M      PD   Y  ++   C   +  
Sbjct: 468 GMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIN 527

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           +A    D M   G+ P+ +T+S+       V+   CK +  + AF++   M+      D 
Sbjct: 528 DAFLLFDRMRAAGVMPDVVTYSI-------VIHSFCKDNNLDSAFKMLERMKEAKCVPDV 580

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TYS+LI   CK G + K+  +  E++  GC P+  T++ ++  L    K+ QAAE  +L
Sbjct: 581 VTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAE--ML 638

Query: 468 ELMNK 472
           E+M K
Sbjct: 639 EIMRK 643



 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 218/451 (48%), Gaps = 30/451 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NGF  +  +++ ++     AN+   A  LL+++    C      + ++  G  ++ +  +
Sbjct: 259 NGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDE 318

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A RV DKM + GC+P   +Y T++        L  A    R M E G +P   + N ++ 
Sbjct: 319 ACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMH 378

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+ +  M+ A ++ + M   GC PD+  Y T+I+G C+ GK+ EA +L ++M  + C 
Sbjct: 379 VFCRRN-DMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCR 437

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V   ++LI+ LC++ +++ A  L          P+V  YS L+  LCK     +A   
Sbjct: 438 PDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESW 497

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+  R  P++VTY+++++GLCK  ++ +A  + DRM+  G+ PD   Y  +I  FC 
Sbjct: 498 LDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCK 557

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIR----------------------------I 375
                 A   L+ M      P+ +T+S  I                              
Sbjct: 558 DNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVT 617

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +NT++ GLCK +   +A ++   MR +S + DS+TY+ LI   C    + ++ R++ E+ 
Sbjct: 618 YNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMK 677

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             GCLPD  T+  ++ AL     +    +LL
Sbjct: 678 DKGCLPDRMTYGTLLRALQKTNNLELVEQLL 708



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 219/424 (51%), Gaps = 12/424 (2%)

Query: 52   TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            T+S ++  L  A +   A  LL R+ +  C      + +I  G+ ++ R  +A  + ++M
Sbjct: 985  TYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 1044

Query: 112  KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
             + GC+P   +Y  +L    +  + + A      M E G  P + + N L+   CK    
Sbjct: 1045 VDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKD-E 1103

Query: 172  MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            ++ A ++   M  +GC P+  +Y T+I GLC+  K++E   L ++M +  C P +VT+ +
Sbjct: 1104 VERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNT 1163

Query: 232  LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            +I+ +C++  V+ A  LF  ++  G  PN+ TY+SL+ GLCK     QA  LL+ M  K+
Sbjct: 1164 IIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQ 1223

Query: 292  H-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
               P+I+TY+T+++GLCK  ++  A ++  +M   GL PD   Y  +IS  C      EA
Sbjct: 1224 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 1283

Query: 351  ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
             N L+ M+  G  P  +T+        T++ G CKT + ++A ++   + ++    D +T
Sbjct: 1284 NNVLELMLKNGFDPGAITYG-------TLIDGFCKTGNLDKALEILQLLLSKGSYPDVVT 1336

Query: 410  YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
            +S  I    K+G + ++  +++ ++  G +PD  T++ ++    D      A +  L E+
Sbjct: 1337 FSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVD--LFEV 1394

Query: 470  MNKC 473
            M +C
Sbjct: 1395 MRQC 1398



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 190/349 (54%), Gaps = 10/349 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           +L +LV+ +Q   A   +R   E        + + LI    + +G +  A+++F EM  +
Sbjct: 132 LLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIR-AGKILPAYELFDEMNRK 190

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G    +  + +++ GLC  G+  +A   F+EM +K C P  VTY ++INGL +S  +++A
Sbjct: 191 GLKAHAGVHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDA 249

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           +RL EEM   G  PNVF+Y++++ G CK      A+ LL+ M+++   P++V+Y+T++NG
Sbjct: 250 IRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVING 309

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK  ++ EA  ++D+M  +G +P+   YG ++  FC +G    A   + +M   G  PN
Sbjct: 310 LCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPN 369

Query: 366 RLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            +T+       N ++   C+  D  RA QV   M       D++ YS++I+ FCK G + 
Sbjct: 370 AITY-------NNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLR 422

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++  ++++++  GC PD    S ++ AL     +  A ELL + +   C
Sbjct: 423 EAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDC 471



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 176/318 (55%), Gaps = 12/318 (3%)

Query: 159  NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
            N L++AL +     DA  +++R      C+P+ +T+  LI+GLCR G I  A EL KEM 
Sbjct: 848  NCLLQALLRLKRPKDA-LQVYRN--KLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMP 904

Query: 219  TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSSLMDGLCKGGCS 277
                   V+ +  +I GLC ++ ++ A+ LF+EM   G   P+VFTYS+++D L K G  
Sbjct: 905  RHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKV 964

Query: 278  SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
              A  L++ M+SK   PN+VTYS+LL+GLCK GKL EA  +L RM   G  P+   Y  I
Sbjct: 965  DDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTI 1024

Query: 338  ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
            I   C +G+  EA + L+EMV GG  PN +T+++       ++   CK      A  +  
Sbjct: 1025 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTV-------LLDAFCKCGKAEDAIGLVE 1077

Query: 397  SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
             M  +    +  TY+SL+  FCKK ++ ++ +++  ++  GC+P+  +++ V+  L    
Sbjct: 1078 VMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKAT 1137

Query: 457  KMRQAAELLLLELMNKCV 474
            K+ +   LL   L N CV
Sbjct: 1138 KVHEGVLLLEQMLSNNCV 1155



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 178/327 (54%), Gaps = 2/327 (0%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
            G+  +  T++ ++      ++   A  LL  + ++ C      + ++  G  +  +  + 
Sbjct: 1083 GYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEG 1142

Query: 105  MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            + + ++M    C P   ++ T++  + +  ++ +A+  +  ++E G  P + + N L+  
Sbjct: 1143 VLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 1202

Query: 165  LCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S   D A  + REM  + GC+PD  TY T+I+GLC+  ++  A +LF +M +   +
Sbjct: 1203 LCK-SRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLA 1261

Query: 224  PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            P  VTY+ +I+ LC+ + ++EA  + E M   G +P   TY +L+DG CK G   +A+E+
Sbjct: 1262 PDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEI 1321

Query: 284  LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            LQ+++SK   P++VT+S  ++ L K G+L++A E+L+ M   GL PD   Y  ++  FCD
Sbjct: 1322 LQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCD 1381

Query: 344  IGKYQEAANFLDEMVLGGITPNRLTWS 370
                ++A +  + M   G  P+  T++
Sbjct: 1382 ASLTEDAVDLFEVMRQCGCEPDNATYT 1408



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 173/344 (50%), Gaps = 16/344 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DIT--EDIFLSICRGYGRVHR 100
           G   D   +S +IS    A + R A DLL+++ +  C  D+     +  ++C+       
Sbjct: 400 GCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAA---- 455

Query: 101 PLDAMRVFDKMK-EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
            +D+ +   +M     C P   +Y  ++  L +  +L  A  +   M +    P V + N
Sbjct: 456 -IDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYN 514

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            ++  LCK S  ++ AF +F  M   G  PD  TY  +I+  C+   +  A ++ + M+ 
Sbjct: 515 SVVDGLCK-SRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKE 573

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
             C P VVTY++LINGLC++ +V++A  +F+EM   G  PN+ TY++L+DGLCK     Q
Sbjct: 574 AKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQ 633

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A E+L++M  +   P+ +TY+ L+NGLC   +L+EA  +L  MK +G  PD   YG ++ 
Sbjct: 634 AAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLR 693

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH-IRIHNTVVQG 382
                   +     L EM           W+ +  R+H  V++G
Sbjct: 694 ALQKTNNLELVEQLLKEME----ATEEGQWNANGARLHRFVIRG 733



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 204/412 (49%), Gaps = 19/412 (4%)

Query: 52   TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            +++ +I+ L  A +      LL+++    C      F +I     + +R   A  +F+ +
Sbjct: 1125 SYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLI 1184

Query: 112  KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSG 170
            +E GC P   +Y +++  L +  +   A    R M R+ G  P + + N +I  LCK S 
Sbjct: 1185 QESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCK-SK 1243

Query: 171  TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             +D A+K+F +M + G  PD  TY  +I+ LC+   + EA  + + M      P  +TY 
Sbjct: 1244 RVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYG 1303

Query: 231  SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            +LI+G C++ ++++A+ + + + SKG  P+V T+S  +D L K G   QA ELL+ M+  
Sbjct: 1304 TLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRA 1363

Query: 291  RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE- 349
               P+ VTY+TLL G C     ++AV++ + M+  G +PD   Y  ++    D   Y++ 
Sbjct: 1364 GLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDL 1423

Query: 350  AANFLDEMVLGGITPN-----RLTWSLH----IRIHNTVVQ--GLCKTDPNRAFQVYLSM 398
             A     MV  G   N     +L  S+     +R+   +V   G C + P  A +V+  M
Sbjct: 1424 LAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGS-PQDARKVFEGM 1482

Query: 399  RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
              R++    + +S+++  +       ++  +   + L+G  PD  T+ +++T
Sbjct: 1483 DQRNV----VLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLT 1530



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 148/360 (41%), Gaps = 61/360 (16%)

Query: 52   TFSLMISKLVSANQFRPAEDLL-DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
            T++ ++  L  + +F  AE LL +   K+ C      + ++  G  +  R   A ++F +
Sbjct: 1195 TYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQ 1254

Query: 111  MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
            M   G  P   +Y  V++ L +   +  A      M + G  P   +   LI   CK +G
Sbjct: 1255 MLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCK-TG 1313

Query: 171  TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             +D A +I + + ++G  PD  T+   I+ L + G++ +A EL + M      P  VTY 
Sbjct: 1314 NLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYN 1373

Query: 231  SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM---------------------- 268
            +L+ G C +   E+A+ LFE MR  G EP+  TY++L+                      
Sbjct: 1374 TLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVD 1433

Query: 269  ------------------------------DGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
                                          D   K G    A ++ + M  +    N+V 
Sbjct: 1434 TGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQR----NVVL 1489

Query: 299  YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
            +S +L       + ++A  +   M L+G++PDA  +  +++  C  G    A   +DE V
Sbjct: 1490 WSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAA---VDEFV 1546



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 4/207 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+  +   + +N A ++FD   A    G   D  T+S++I      N    A  +
Sbjct: 511 VTYNSVVDGLCKSRRINDAFLLFDRMRAA---GVMPDVVTYSIVIHSFCKDNNLDSAFKM 567

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L+R+ + KC      + ++  G  +      A  VF +M   GC P   +Y T++  L +
Sbjct: 568 LERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCK 627

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            N+++ A      MR+    P   +   LI  LC N+  ++ A+++ REM ++GC PD  
Sbjct: 628 INKVEQAAEMLEIMRKQSCTPDSITYTCLINGLC-NASRLEEAWRVLREMKDKGCLPDRM 686

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMET 219
           TYGTL+  L +   +   ++L KEME 
Sbjct: 687 TYGTLLRALQKTNNLELVEQLLKEMEA 713



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 158/392 (40%), Gaps = 66/392 (16%)

Query: 13   ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
            IT   V+  +   K V++A  +F       ++G   D+ T+S++IS L        A ++
Sbjct: 1230 ITYNTVIDGLCKSKRVDRAYKLF---LQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNV 1286

Query: 73   LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            L+ + K   D     + ++  G+ +      A+ +   +   G  P   ++   +  L +
Sbjct: 1287 LELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSK 1346

Query: 133  ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              +L+ A      M   G+ P   + N L+K  C  S T DA   +F  M   GC PD+ 
Sbjct: 1347 RGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAV-DLFEVMRQCGCEPDNA 1405

Query: 193  TYGTLINGLC-------------------------------------------------- 202
            TY TL+  L                                                   
Sbjct: 1406 TYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDM 1465

Query: 203  --RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
              + G   +A+++F+ M+ +     VV +++++      K  E+A  L+  M  +GVEP+
Sbjct: 1466 FGKCGSPQDARKVFEGMDQR----NVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPD 1521

Query: 261  VFTYSSLMDGLCKGGCSSQAMELLQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEI 318
              T+ SL+   C  G    A++   + IS+ +   P +  +S +++ L + G + EA ++
Sbjct: 1522 AVTFLSLLTMCCHAGLLDAAVDEF-VSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDL 1580

Query: 319  LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
            +  M     KP A  +  ++S +   G ++ A
Sbjct: 1581 MLGMP---CKPSAATWNCLLSAYKICGDFERA 1609



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 32/227 (14%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD------------------ITED 86
            G   DN+T++ ++  LV    ++   DLL  V+K   D                  +  D
Sbjct: 1399 GCEPDNATYTTLVGHLVDKKSYK---DLLAEVSKSMVDTGFKLNHELSSKLEASIEVEAD 1455

Query: 87   IFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            + L  +I   +G+   P DA +VF+ M +         +  +L + V   Q + AF  +R
Sbjct: 1456 VRLGCAIVDMFGKCGSPQDARKVFEGMDQ----RNVVLWSAMLGVYVFHKQEEQAFGLWR 1511

Query: 145  HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCR 203
             M   G++P   +   L+  +C ++G +DAA   F  +  + G  P    +  +I+ L R
Sbjct: 1512 VMGLEGVEPDAVTFLSLL-TMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGR 1570

Query: 204  LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            LG + EA++L   M    C P+  T+  L++        E A+R+ E
Sbjct: 1571 LGLVNEAEDLMLGM---PCKPSAATWNCLLSAYKICGDFERALRVAE 1614


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 237/446 (53%), Gaps = 15/446 (3%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S  +    V  +++ +K+  KAL IF+S   E  +GF+H   T+  MI KL    +F   
Sbjct: 2   SPALLPKHVAAVVKYQKNPLKALEIFNSVKKE--DGFKHTLLTYKGMIEKLGFHGEFEAM 59

Query: 70  EDLL--DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           E++L   R+N +   + E +++   R YGR  +  +A+ VF++M  F CEP+ +SY  ++
Sbjct: 60  EEVLAETRMNIDN-GLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIM 118

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            ILVE      A + Y  MR+ GI P V +  + +K+ C+ S    AA ++   MP++GC
Sbjct: 119 NILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRP-HAARRLLNNMPSQGC 177

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
              +  Y T+I G        EA ELF+EM      P ++ +  LI+ LC+   V+E+ R
Sbjct: 178 ESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESER 237

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L  ++  +GV PN+FT +  + G C+    ++A+ LL   + +   P+++TY+TL+ GLC
Sbjct: 238 LLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLD-GVGRGLTPDVITYNTLICGLC 296

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K  K+ EA   L +M  +G +PD   Y  II  +C +G  Q A   L +    G  P+  
Sbjct: 297 KNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDES 356

Query: 368 TWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+        +++ GLC+  D +RA  V+     + +  + +  ++L+    ++G I ++
Sbjct: 357 TYC-------SLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQA 409

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTAL 452
            ++++E+  +GC PD  T++ V+  L
Sbjct: 410 LKLMNEMSENGCSPDIWTYNLVINGL 435



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 201/391 (51%), Gaps = 19/391 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAM 105
           D   F+ +I  L      + +E LL++V K        T +IF+   +G+ +     +A+
Sbjct: 215 DIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFI---QGFCQRAMLNEAI 271

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+ D +   G  P   +Y T++  L +  ++  A  + R M   G +P   + N +I   
Sbjct: 272 RLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGY 330

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK  G M  A +I R+   +G  PD  TY +LINGLC+ G I  A  +F E   K   P 
Sbjct: 331 CK-LGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPN 389

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           +V   +L+ GL Q   + +A++L  EM   G  P+++TY+ +++GLCK GC S A  L+ 
Sbjct: 390 LVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVI 449

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
             I+K H P++ T++TL++G CK+ KL  A+EI+DRM   G+ PD   Y  I++  C  G
Sbjct: 450 DAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAG 509

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
           KY++       M+  G  PN +T+       N + +  CK      A  +   M+N+ ++
Sbjct: 510 KYEDVMGTFKLMMEKGCVPNIITY-------NILTESFCKARKVEEALNLIEEMQNKGLT 562

Query: 405 VDSLTYSSLITCFCKKGDIHKSARI---VDE 432
            D + + +L+  FC  GD+  + ++   VDE
Sbjct: 563 PDVVNFGTLMKGFCDNGDLDGAYQLFKRVDE 593



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 211/483 (43%), Gaps = 56/483 (11%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +N+A+ + D        G   D  T++ +I  L    +   AE  L ++  E  +     
Sbjct: 267 LNEAIRLLDGV----GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFT 322

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + SI  GY ++    +A ++       G  P   +Y +++  L ++  +  A   +    
Sbjct: 323 YNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAM 382

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG-- 205
           E G++P +   N L+K L +  G +  A K+  EM   GC+PD +TY  +INGLC++G  
Sbjct: 383 EKGLKPNLVLCNTLVKGLSQ-QGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCV 441

Query: 206 ---------------------------------KIYEAKELFKEMETKACSPTVVTYTSL 232
                                            K+  A E+   M     SP V+TY S+
Sbjct: 442 SDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSI 501

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           +NGLC++   E+ M  F+ M  KG  PN+ TY+ L +  CK     +A+ L++ M +K  
Sbjct: 502 LNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGL 561

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-GLKPDAGLYGKIISCFCDIGKYQEAA 351
            P++V + TL+ G C  G L  A ++  R+  Q         Y  +I+ F        A 
Sbjct: 562 TPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAE 621

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
              ++M   G +P+  T+ +       ++ G CKT + N  +   L    + +     T+
Sbjct: 622 KLFNKMCENGFSPDSYTYRV-------MIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTF 674

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE-L 469
             ++ C C K  +H++  I+  +V  G +P+      V+  +++  K   AA  +++E L
Sbjct: 675 GRVLNCLCLKRRVHEAVGIIHLMVHKGIVPE------VVNTIFEADKKEVAAPKIVVENL 728

Query: 470 MNK 472
           M K
Sbjct: 729 MKK 731


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 150/516 (29%), Positives = 252/516 (48%), Gaps = 65/516 (12%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           KIT  Q+ +L+    DV+ ++ +F    ++   G+RH    + ++I KL S  +F+  + 
Sbjct: 69  KITPFQLCKLLELPLDVSTSMELFSWTGSQ--KGYRHSFDVYQVLIGKLGSNGEFKTIDR 126

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAIL 130
           LL ++  E     E +F+SI R Y +   P    R+  +M+  + CEPT KSY  VL IL
Sbjct: 127 LLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEIL 186

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V  N  K+A   +  M    I P + +  V++KALC     +D+A  + R+M   GC P+
Sbjct: 187 VSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCA-VNEVDSALSVLRDMTKHGCVPN 245

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           S  Y TLI+ L +  ++ EA +L +EM    C P   T+  +I GLC+   + EA ++  
Sbjct: 246 SVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVN 305

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL-------------------------- 284
            M  +G  P+  TY  LM+GLCK G    A +L                           
Sbjct: 306 RMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDD 365

Query: 285 ------QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
                  M+ S    P++ TY++L+ G  K+G +  A+E+L  M+ +G KP+   Y  ++
Sbjct: 366 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILV 425

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI-------RI---------------- 375
             FC +GK  EA N L+EM   G+ PN + ++  I       RI                
Sbjct: 426 DGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK 485

Query: 376 -----HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N+++ GLC+ D    A  +   M +  +  +++TY++LI  F ++G+I ++ ++
Sbjct: 486 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKL 545

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V+E+V  G L DE T+++++  L    ++ +A  L 
Sbjct: 546 VNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLF 581



 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 231/446 (51%), Gaps = 29/446 (6%)

Query: 24  AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI 83
           A K VN+ L+           GF  D+ T+  +++ L    +   A+DL  R+ K     
Sbjct: 300 AAKMVNRMLI----------RGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKP---- 345

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVF-DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           T  IF ++  G+    R  DA  V  D +  +G  P   +Y +++    ++  + LA   
Sbjct: 346 TSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEV 405

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
            R MR  G +P V S  +L+   CK  G +D A+ +  EM   G  P++  +  LI+  C
Sbjct: 406 LRDMRNKGCKPNVYSYTILVDGFCK-LGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFC 464

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           +  +I EA E+F+EM  K C P V T+ SLI+GLC+   ++ A+ L  +M S+GV  N  
Sbjct: 465 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 524

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY++L++   + G   +A +L+  M+ +    + +TY++L+ GLC+ G++ +A  + ++M
Sbjct: 525 TYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKM 584

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
              GL P +     +I+  C  G  +EA  F  EMVL G TP+ +T+       N+++ G
Sbjct: 585 LRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTF-------NSLING 637

Query: 383 LCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LC+         ++  ++   I  D++TY++L++  CK G ++ +  ++DE + DG +P+
Sbjct: 638 LCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 697

Query: 442 EGTWSAVMTAL-----WDRRKMRQAA 462
           + TWS ++ +L      DRR    A 
Sbjct: 698 DRTWSILLQSLVPQETLDRRTFYNAV 723



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 217/446 (48%), Gaps = 41/446 (9%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           ++++++  LVS N  + A ++   +   K   T   F  + +    V+    A+ V   M
Sbjct: 178 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDM 237

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + GC P    Y T++  L + N++  A +    M  +G  P   + N +I  LCK    
Sbjct: 238 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRI 297

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-------------- 217
            +AA K+   M  RG TPD  TYG L+NGLC++G++  AK+LF  +              
Sbjct: 298 NEAA-KMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHG 356

Query: 218 --------ETKAC----------SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
                   + KA            P V TY SLI G  +   V  A+ +  +MR+KG +P
Sbjct: 357 FVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKP 416

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           NV++Y+ L+DG CK G   +A  LL  M +   +PN V ++ L++  CKE ++ EAVEI 
Sbjct: 417 NVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 476

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
             M  +G KPD   +  +IS  C++ + + A   L +M+  G+  N +T+       NT+
Sbjct: 477 REMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY-------NTL 529

Query: 380 VQG-LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +   L + +   A ++   M  +   +D +TY+SLI   C+ G++ K+  + ++++ DG 
Sbjct: 530 INAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGL 589

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAEL 464
           +P   + + ++  L     + +A E 
Sbjct: 590 VPSSISCNILINGLCRSGMVEEAVEF 615


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 230/460 (50%), Gaps = 45/460 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+GF      +  +++ L        AE  + ++ K    +   I  S+  G+ R     
Sbjct: 188 ADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLR 247

Query: 103 DAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           DA++VFD M KE  C P   SY  ++  L E  +L+ AF     M E G QP   +  VL
Sbjct: 248 DALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL 307

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IKALC + G +D AF +F EM  RGC P+ +TY  LI+GLCR GKI EA  + ++M    
Sbjct: 308 IKALC-DRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDR 366

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P+V+TY +LING C+   V  A  L   M  +  +PNV T++ LM+GLC+ G   +A+
Sbjct: 367 IFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAV 426

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ M+     P+IV+Y+ L++GLC+EG +  A ++L  M    ++PD   +  II+ F
Sbjct: 427 HLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAF 486

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR----------- 390
           C  GK   A+ FL  M+  GI+ + +T +       T++ G+CK    R           
Sbjct: 487 CKQGKADVASAFLGLMLRKGISLDEVTGT-------TLIDGVCKVGKTRDALFILETLVK 539

Query: 391 --------AFQVYLSMRNRSISVDS-----------------LTYSSLITCFCKKGDIHK 425
                   +  V L M ++   V                   +TY++L+    + GDI  
Sbjct: 540 MRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITG 599

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           S RI++ + L GCLP+   ++ ++  L    ++ +A +LL
Sbjct: 600 SFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLL 639



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 239/507 (47%), Gaps = 64/507 (12%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           +K++        ++QV+ L R++ D+     ++    + Y       N    L    +VS
Sbjct: 60  LKSLVSHMNPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKL----IVS 115

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPK 121
           +  +R A  ++  + KE C   E   L +             M  FD+++E FG      
Sbjct: 116 SGLYRVAHAVIVALIKE-CSRCEKEMLKL-------------MYCFDELREVFGFRLNYP 161

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA------- 174
            Y ++L  L + +   LA+  YR M   G    +     ++ ALCKN  T  A       
Sbjct: 162 CYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKI 221

Query: 175 ---------------------------AFKIFREMPNR-GCTPDSYTYGTLINGLCRLGK 206
                                      A K+F  M     C P+S +Y  LI+GLC +G+
Sbjct: 222 LKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGR 281

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + EA  L  +M  K C P+  TYT LI  LC    +++A  LF+EM  +G +PNV TY+ 
Sbjct: 282 LEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTV 341

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DGLC+ G   +A  + + M+  R  P+++TY+ L+NG CK+G++  A E+L  M+ + 
Sbjct: 342 LIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA 401

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
            KP+   + +++   C +GK  +A + L  M+  G++P+ +++       N ++ GLC+ 
Sbjct: 402 CKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSY-------NVLIDGLCRE 454

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              N A+++  SM    I  D LT++++I  FCK+G    ++  +  ++  G   DE T 
Sbjct: 455 GHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTG 514

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNK 472
           + ++  +    K R A  L +LE + K
Sbjct: 515 TTLIDGVCKVGKTRDA--LFILETLVK 539



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 215/485 (44%), Gaps = 80/485 (16%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           +K  F   + I ++ +L   R   ++  AL +FD  + E       ++ ++S++I  L  
Sbjct: 222 LKIGFVLDSHIGTSLLLGFCRG-LNLRDALKVFDVMSKEVTCA--PNSVSYSILIHGLCE 278

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
             +   A  L D++ ++ C  +   +  + +          A  +FD+M   GC+P   +
Sbjct: 279 VGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHT 338

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y  ++  L  + +++ A    R M +  I P V + N LI   CK+ G +  AF++   M
Sbjct: 339 YTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKD-GRVVPAFELLTVM 397

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             R C P+  T+  L+ GLCR+GK Y+A  L K M     SP +V+Y  LI+GLC+   +
Sbjct: 398 EKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHM 457

Query: 243 EEAMRLFEEMRSKGVEPNVFTYS-----------------------------------SL 267
             A +L   M    +EP+  T++                                   +L
Sbjct: 458 NTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTL 517

Query: 268 MDGLCKGGCSSQAMELLQMMISKR-----HR----------------------------- 293
           +DG+CK G +  A+ +L+ ++  R     H                              
Sbjct: 518 IDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGL 577

Query: 294 -PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            P++VTY+TL++GL + G +  +  IL+ MKL G  P+   Y  II+  C  G+ +EA  
Sbjct: 578 VPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEK 637

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSS 412
            L  M   G++PN +T+++ ++ +  V  G  K D  RA +   +M  R   ++   YSS
Sbjct: 638 LLSAMQDSGVSPNHVTYTVMVKGY--VNNG--KLD--RALETVRAMVERGYELNDRIYSS 691

Query: 413 LITCF 417
           L+  F
Sbjct: 692 LLQGF 696



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 128/327 (39%), Gaps = 53/327 (16%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T + +I  +    + R A  +L+ + K +   T      I     +  +  + 
Sbjct: 506 GISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEE 565

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  K+ + G  P+  +Y T++  L+    +  +FR    M+  G  P V    ++I  
Sbjct: 566 LAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIING 625

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC+  G ++ A K+   M + G +P+  TY  ++ G    GK+  A E  + M  +    
Sbjct: 626 LCQ-FGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYEL 684

Query: 225 TVVTYTSLINGLCQSK----------------------------SVEEAM---------- 246
               Y+SL+ G   S+                            SV E +          
Sbjct: 685 NDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRETDPECINELISVVEQLGGCISGLCIF 744

Query: 247 ---RLFEEMRSKG--------VEPNVFTYSSL---MDGLCKGGCSSQAMELLQMMISKRH 292
              RL +E R+          +E  VF   ++   M+  C     ++ MEL+ +++    
Sbjct: 745 LVTRLCKEGRTDESNDLVQNVLERGVFLEKAMDIIMESYCSKKKHTKCMELITLVLKSGF 804

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEIL 319
            P+  ++  ++ GL KEG  + A E++
Sbjct: 805 VPSFKSFCLVIQGLKKEGDAERARELV 831


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 141/460 (30%), Positives = 228/460 (49%), Gaps = 50/460 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  T + +I+ + +A     A   +D +    CD     + ++   + R  +  +A
Sbjct: 20  GFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAAFARAKKLEEA 76

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M++ ++M+E GC P   +Y  ++  L + + +  A    + M E G  P V + N L+  
Sbjct: 77  MKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDG 136

Query: 165 LCKNSGTMDA----------------------------------AFKIFREMPNRGCTPD 190
            CK     DA                                  A ++  EM   G TPD
Sbjct: 137 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPD 196

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           ++TY  LI+GLC+  KI EA+++ + M    C+P VV Y+S+I+  C+S  + EA +  +
Sbjct: 197 AFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 256

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL-QMMISKRHRPNIVTYSTLLNGLCKE 309
           EMR +   P+V TY++++DGLCK G  ++A  +L QM  S    P++VTYST++NGLCK 
Sbjct: 257 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKS 316

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
             L EA ++LDRM   G  PD   Y  II   C  G+ +EA   L  M   G  PN +T+
Sbjct: 317 DMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTY 376

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +       T++ GLCK    + A +V   MRN     + +TY++++   C  G I ++ +
Sbjct: 377 T-------TLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQ 429

Query: 429 IVDELVLDG---CLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +V  +  DG   C PD  T+  ++ AL     +++A +LL
Sbjct: 430 LVQRMK-DGRAECSPDAATYRTIVNALMSSDLVQEAEQLL 468



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 196/364 (53%), Gaps = 13/364 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ + ++MK  G  P   ++  ++  +     L  A     H+R +G  P V +   LI 
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD---HLRSMGCDPNVVTYTALIA 65

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A  + +  ++ A K+  EM  RGC P+  TY  L++ LC+L  +  A+++ K+M     +
Sbjct: 66  AFAR-AKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFA 124

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+T+ SL++G C+  +V++A +L   M +KG+ PNV TYS+L+DGLCK     +A E+
Sbjct: 125 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEV 184

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ M +    P+  TYS L++GLCK  K++EA ++L RM   G  PD  +Y  II  FC 
Sbjct: 185 LEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCK 244

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
            GK  EA   L EM     +P+ +T+       NTV+ GLCK       QV L     S 
Sbjct: 245 SGKLLEAQKTLQEMRKQRKSPDVVTY-------NTVIDGLCKLGKIAEAQVILDQMQESG 297

Query: 404 SV--DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            V  D +TYS++I   CK   + ++ +++D +   GC PD  T++ ++  L    ++ +A
Sbjct: 298 DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEA 357

Query: 462 AELL 465
             LL
Sbjct: 358 EYLL 361



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 169/335 (50%), Gaps = 47/335 (14%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N+G + AA ++  EM + G  PD++T+  +I  +   G +  A +  + M    C P VV
Sbjct: 2   NAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVV 58

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSK-------------------------------- 255
           TYT+LI    ++K +EEAM+L EEMR +                                
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 118

Query: 256 ---GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
              G  PNV T++SL+DG CK G    A +LL +M++K  RPN+VTYS L++GLCK  K 
Sbjct: 119 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKF 178

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA E+L+ MK  G+ PDA  Y  +I   C   K +EA   L  M   G TP+ + +S  
Sbjct: 179 LEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS-- 236

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
                +++   CK+      Q  L  MR +  S D +TY+++I   CK G I ++  I+D
Sbjct: 237 -----SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILD 291

Query: 432 ELVLDG-CLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++   G  LPD  T+S V+  L     + +A +LL
Sbjct: 292 QMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 326



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 171/320 (53%), Gaps = 8/320 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHR 100
           A G R +  T+S +I  L  + +F  A+++L+ +      +T D F   ++  G  +  +
Sbjct: 155 AKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKAS--GVTPDAFTYSALIHGLCKADK 212

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A ++  +M   GC P    Y +++    +  +L  A +  + MR+    P V + N 
Sbjct: 213 IEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNT 272

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           +I  LCK  G +  A  I  +M   G   PD  TY T+INGLC+   + EA++L   M  
Sbjct: 273 VIDGLCK-LGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCK 331

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
             C+P VVTYT++I+GLC+   +EEA  L + M+  G  PNV TY++L+ GLCK     +
Sbjct: 332 AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDE 391

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK--LQGLKPDAGLYGKI 337
           A  +++ M +    PN+VTY+T++NGLC  G+++EA +++ RMK       PDA  Y  I
Sbjct: 392 AERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTI 451

Query: 338 ISCFCDIGKYQEAANFLDEM 357
           ++        QEA   L++M
Sbjct: 452 VNALMSSDLVQEAEQLLEQM 471



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 11/230 (4%)

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C +  +  A+ L EEM+S G  P+ FT++ ++  +   G    AM+ L+ M      PN+
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD---PNV 57

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           VTY+ L+    +  KL+EA+++L+ M+ +G  P+   Y  ++   C +     A + + +
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
           M+ GG  PN +T+       N++V G CK  + + A ++   M  + +  + +TYS+LI 
Sbjct: 118 MIEGGFAPNVMTF-------NSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALID 170

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             CK     ++  +++E+   G  PD  T+SA++  L    K+ +A ++L
Sbjct: 171 GLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQML 220


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 147/489 (30%), Positives = 249/489 (50%), Gaps = 44/489 (8%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T+IT  Q+ +L+    DV  ++ +F  A  +   G+ H    + ++I KL +A +F+  +
Sbjct: 92  TRITPYQLCKLLELPLDVPTSMELFQWAGTQ--KGYCHMFDVYYMLIDKLGAAGEFKTTD 149

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAI 129
            LL ++ +E     E +F+ I + YGR   P  A R+   M+  + CEPT +SY  VL +
Sbjct: 150 ALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDV 209

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L+  N  K+    +  M   GI P V +  V++KALC     +D+A  + ++M   GC P
Sbjct: 210 LLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCL-VNEVDSACALLKDMTRHGCVP 268

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           ++  Y TLI+ L ++G++ E  +L +EM    C P V T+   I+GLC+   + EA +L 
Sbjct: 269 NAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLV 328

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL------------------------- 284
           + M  +G  PN FTY  LM GLC+ G   +A  LL                         
Sbjct: 329 DRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLD 388

Query: 285 -------QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
                  + M+S    P+I TY+TL+ GLCK+G L  A E+++ M+++G +P+   Y  +
Sbjct: 389 EAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTIL 448

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I  FC  G+ +EA N LDEM   G+  N + +       N ++  LCK +    A  ++ 
Sbjct: 449 IDRFCKEGRLEEARNVLDEMSGKGLALNAVGY-------NCLISALCKDEKVQDALNMFG 501

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M ++    D  T++SLI   CK     ++  +  +++L+G + +  T++ ++ A   R 
Sbjct: 502 DMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRG 561

Query: 457 KMRQAAELL 465
            M++A +L+
Sbjct: 562 AMQEALKLV 570



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 227/458 (49%), Gaps = 18/458 (3%)

Query: 13  ITSAQVLQ-LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           + +A V Q LI A   V +   +          G   D +TF+  I  L    +   A  
Sbjct: 267 VPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAK 326

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           L+DR+           +  +  G  R+ +  +A  + +K+      P    + T++   V
Sbjct: 327 LVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLINGYV 382

Query: 132 EENQLKLA-FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
              +L  A    +  M  +G  P + + N LI  LCK  G + +A ++  EM  +GC P+
Sbjct: 383 SRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCK-KGYLVSARELMNEMQIKGCEPN 441

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY  LI+  C+ G++ EA+ +  EM  K  +   V Y  LI+ LC+ + V++A+ +F 
Sbjct: 442 VITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFG 501

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M SKG +P++FT++SL+ GLCK     +A+ L Q M+ +    N +TY+TL++   + G
Sbjct: 502 DMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRG 561

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            +QEA+++++ M  +G   D   Y  +I   C  G  ++     ++M+  G+ PN ++  
Sbjct: 562 AMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISC- 620

Query: 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N ++ GLC+T +   A +    M +R ++ D +TY+SLI   CK G   ++  +
Sbjct: 621 ------NILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNL 674

Query: 430 VDELVLDGCLPDEGTWSAVMTALWD-RRKMRQAAELLL 466
            D+L ++G  PD  T++ +++  W  +  M   A LLL
Sbjct: 675 FDKLQVEGICPDAITYNTLIS--WHCKEGMFDDAHLLL 710



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 210/410 (51%), Gaps = 18/410 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRP 101
           GF  ++ T+ +++  L    +   A  LL++V      +    F ++  GY   GR+   
Sbjct: 335 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVL----FNTLINGYVSRGRLDEA 390

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              M   + M   GC P   +Y T++  L ++  L  A      M+  G +P V +  +L
Sbjct: 391 KAVMH--ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTIL 448

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK  G ++ A  +  EM  +G   ++  Y  LI+ LC+  K+ +A  +F +M +K 
Sbjct: 449 IDRFCK-EGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKG 507

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P + T+ SLI GLC+    EEA+ L+++M  +GV  N  TY++L+    + G   +A+
Sbjct: 508 CKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEAL 567

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +L+  M+ +    + +TY+ L+  LC+ G +++ + + + M  +GL P+      +I+  
Sbjct: 568 KLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 627

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
           C  G  Q A  FL +M+  G+TP+ +T+       N+++ GLCKT     A  ++  ++ 
Sbjct: 628 CRTGNIQHALEFLRDMIHRGLTPDIVTY-------NSLINGLCKTGRAQEALNLFDKLQV 680

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
             I  D++TY++LI+  CK+G    +  ++   V  G +P+E TW  +++
Sbjct: 681 EGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVS 730



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 179/334 (53%), Gaps = 3/334 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I  L        A +L++ +  + C+     +  +   + +  R  +A  V 
Sbjct: 406 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 465

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M   G       Y  +++ L ++ +++ A   +  M   G +P + + N LI  LCK 
Sbjct: 466 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK- 524

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
               + A  ++++M   G   ++ TY TLI+   R G + EA +L  +M  + C    +T
Sbjct: 525 VNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 584

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  LI  LC++ ++E+ + LFE+M SKG+ PN  + + L++GLC+ G    A+E L+ MI
Sbjct: 585 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMI 644

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   P+IVTY++L+NGLCK G+ QEA+ + D+++++G+ PDA  Y  +IS  C  G + 
Sbjct: 645 HRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFD 704

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           +A   L   V  G  PN +TW  +I + N + +G
Sbjct: 705 DAHLLLSRGVDSGFIPNEVTW--YILVSNFIKEG 736



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 5/213 (2%)

Query: 35  FDSATAEYAN----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           F+ A   Y +    G   +  T++ +I   +     + A  L++ +    C + +  +  
Sbjct: 528 FEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 587

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + +   R       + +F+ M   G  P   S   ++  L     ++ A  F R M   G
Sbjct: 588 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 647

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           + P + + N LI  LCK +G    A  +F ++   G  PD+ TY TLI+  C+ G   +A
Sbjct: 648 LTPDIVTYNSLINGLCK-TGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 706

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             L          P  VT+  L++   +    E
Sbjct: 707 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/423 (30%), Positives = 227/423 (53%), Gaps = 13/423 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  T + +I+ + +A     A   +D +    CD     + ++   + R  +  +A
Sbjct: 142 GFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAAFARAKKLEEA 198

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M++ ++M+E GC P   +Y  ++  L + + +  A    + M E G  P V + N L+  
Sbjct: 199 MKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDG 258

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +D A K+   M  +G  P+  TY  LI+GLC+  K  EAKE+ +EM+T+  +P
Sbjct: 259 FCKR-GNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTP 317

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY++LI+GLC++  +EEA ++   M   G  P+V  YSS++   CK G   +A + L
Sbjct: 318 DAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTL 377

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG-LKPDAGLYGKIISCFCD 343
           Q M  +R  P++VTY+T+++GLCK GK+ EA  IL++M+  G + PD   Y  +I+  C 
Sbjct: 378 QEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCK 437

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRS 402
                EA   LD M   G  P+ +T++       T++ GLCK       +  L  M+   
Sbjct: 438 SDMLVEAQKLLDRMCKAGCNPDVVTYT-------TIIDGLCKCGRLEEAEYLLQGMKRAG 490

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
            + + +TY++LI+  CK   + ++ R+++E+   GC P+  T++ ++  L    ++++A 
Sbjct: 491 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQ 550

Query: 463 ELL 465
           +L+
Sbjct: 551 QLV 553



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 144/453 (31%), Positives = 234/453 (51%), Gaps = 20/453 (4%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V +++ + KD   AL  F  A A    GF H   +++ ++  LV   + R A DL     
Sbjct: 46  VGRVVNSLKDAKLALAFFRWAPASIP-GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSEL 104

Query: 78  KEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
              C+    + +I +S     G +H    A+ + ++MK  G  P   ++  ++  +    
Sbjct: 105 LASCEPDVCSYNIVISGFCNAGDLHA---ALELLEEMKSAGFAPDAFTHTPIITAMANAG 161

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
            L  A     H+R +G  P V +   LI A  + +  ++ A K+  EM  RGC P+  TY
Sbjct: 162 DLDGAMD---HLRSMGCDPNVVTYTALIAAFAR-AKKLEEAMKLLEEMRERGCPPNLVTY 217

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
             L++ LC+L  +  A+++ K+M     +P V+T+ SL++G C+  +V++A +L   M +
Sbjct: 218 NVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVA 277

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           KG+ PNV TYS+L+DGLCK     +A E+L+ M ++   P+  TYS L++GLCK  K++E
Sbjct: 278 KGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEE 337

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A ++L RM   G  PD  +Y  II  FC  GK  EA   L EM     +P+ +T+     
Sbjct: 338 AEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTY----- 392

Query: 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSISV--DSLTYSSLITCFCKKGDIHKSARIVDE 432
             NTV+ GLCK       QV L     S  V  D +TYS++I   CK   + ++ +++D 
Sbjct: 393 --NTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDR 450

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +   GC PD  T++ ++  L    ++ +A  LL
Sbjct: 451 MCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLL 483



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 171/320 (53%), Gaps = 8/320 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHR 100
           A G R +  T+S +I  L  + +F  A+++L+ +      +T D F   ++  G  +  +
Sbjct: 277 AKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTR--GVTPDAFTYSALIHGLCKADK 334

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A ++  +M   GC P    Y +++    +  +L  A +  + MR+    P V + N 
Sbjct: 335 IEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNT 394

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           +I  LCK  G +  A  I  +M   G   PD  TY T+INGLC+   + EA++L   M  
Sbjct: 395 VIDGLCK-LGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCK 453

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
             C+P VVTYT++I+GLC+   +EEA  L + M+  G  PNV TY++L+ GLCK     +
Sbjct: 454 AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDE 513

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK--LQGLKPDAGLYGKI 337
           A  +++ M +    PN+VTY+T++NGLC  G+++EA +++ RMK       PDA  Y  I
Sbjct: 514 AERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTI 573

Query: 338 ISCFCDIGKYQEAANFLDEM 357
           ++        QEA   L++M
Sbjct: 574 VNALMSSDLVQEAEQLLEQM 593



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 161/282 (57%), Gaps = 4/282 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+S +I  L  A++   AE +L R+    C     ++ SI   + +  + L+A
Sbjct: 314 GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEA 373

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
            +   +M++    P   +Y TV+  L +  ++  A      M+E G + P V + + +I 
Sbjct: 374 QKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVIN 433

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK+   ++A  K+   M   GC PD  TY T+I+GLC+ G++ EA+ L + M+   C+
Sbjct: 434 GLCKSDMLVEAQ-KLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCA 492

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTYT+LI+GLC+++ V+EA R+ EEMR+ G  PN+ TY+++++GLC  G   +A +L
Sbjct: 493 PNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQL 552

Query: 284 LQMMISKRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +Q M   R    P+  TY T++N L     +QEA ++L++MK
Sbjct: 553 VQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMK 594



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 6/210 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D  T++ +I  L    +   A+ +L+++ +E  D+  D+  + ++  G  +    ++A +
Sbjct: 388 DVVTYNTVIDGLCKLGKIAEAQVILEQM-QESGDVLPDVVTYSTVINGLCKSDMLVEAQK 446

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           + D+M + GC P   +Y T++  L +  +L+ A    + M+  G  P V +   LI  LC
Sbjct: 447 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLC 506

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET--KACSP 224
           K +  +D A ++  EM N GC P+  TY T++NGLC  G+I EA++L + M+     CSP
Sbjct: 507 K-ARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSP 565

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
              TY +++N L  S  V+EA +L E+M+S
Sbjct: 566 DAATYRTIVNALMSSDLVQEAEQLLEQMKS 595



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 3/177 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T+S +I+ L  ++    A+ LLDR+ K  C+     + +I  G  +  R  +A  + 
Sbjct: 424 DVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLL 483

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             MK  GC P   +Y T+++ L +  ++  A R    MR  G  P + + N ++  LC  
Sbjct: 484 QGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCV- 542

Query: 169 SGTMDAAFKIFREMPN--RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           SG +  A ++ + M +    C+PD+ TY T++N L     + EA++L ++M++   S
Sbjct: 543 SGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKSTTSS 599


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 235/448 (52%), Gaps = 18/448 (4%)

Query: 34  IFDSATA-----EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITED 86
           +FD A A     E   G + D  T++ +++ LV  N+ +  E +  R+     K D+T  
Sbjct: 155 LFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVT-- 212

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            F  + +   R H+   A+ + ++M  +G  P  K++ T++   +EE  +  A R    M
Sbjct: 213 TFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQM 272

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G      ++NVL+   CK  G ++       EM N G  PD +T+ +L+NGLCR+G 
Sbjct: 273 VAAGCPSSNVTVNVLVHGYCK-EGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGH 331

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A E+   M  +   P + TY SLI GLC+   VEEA+ +  +M  +   PN  TY++
Sbjct: 332 VKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNT 391

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+  LCK     +A EL +++ SK   P++ T+++L+ GLC     + A+E+ + MK +G
Sbjct: 392 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKG 451

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             PD   Y  +I   C  G+ +EA + L EM   G + N +T+       NT++ G CK 
Sbjct: 452 CHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTY-------NTLIDGFCKN 504

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                A +++  M  + IS + +TY++LI   CK   + ++A+++D+++++G  PD+ T+
Sbjct: 505 KRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTY 564

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++++T       +++AA+++     N C
Sbjct: 565 NSLLTYFCRAGDIKKAADIVQTMTSNGC 592



 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 141/469 (30%), Positives = 238/469 (50%), Gaps = 51/469 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G + D +TF+++I  L  A+Q RPA  +++ +        E  F ++ +G+       
Sbjct: 204 SRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMN 263

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAIL---VEENQLKLAFRFYRHMREIGIQPCVASLN 159
            A+R+ ++M   GC   P S +TV  ++    +E +++    F   M   G +P   + N
Sbjct: 264 GALRIREQMVAAGC---PSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFN 320

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            L+  LC+  G +  A +I   M   G  PD +TY +LI GLC+LG++ EA E+  +M  
Sbjct: 321 SLVNGLCR-IGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMIL 379

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEA---------------------------------- 245
           +  SP  VTY +LI+ LC+   VEEA                                  
Sbjct: 380 RDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRL 439

Query: 246 -MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
            M LFEEM++KG  P+ FTY+ L+D LC  G   +A+ LL+ M S     N+VTY+TL++
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLID 499

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G CK  +++EA EI D M+LQG+  +   Y  +I   C   + +EAA  +D+M++ G+ P
Sbjct: 500 GFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKP 559

Query: 365 NRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           ++ T+       N+++   C+  D  +A  +  +M +     DS+TY +LI    K G +
Sbjct: 560 DKFTY-------NSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRV 612

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
             ++R++  + L G +    T++ V+ AL+  ++  +A   L  E+M K
Sbjct: 613 ELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVR-LFREMMEK 660



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 237/455 (52%), Gaps = 12/455 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
            T  Q+   +R + D +  L + D A+ +    F   +  +  ++ KL     F     +
Sbjct: 70  FTPKQLRDALRRQSDEDSILDLLDWASKQ--PNFVPSSVIYEEVLRKLGKDGSFGSMRRV 127

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILV 131
           L  +    C+I    FL +   Y +     +A+ V D M+E FG +    +Y  +L +LV
Sbjct: 128 LQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLV 187

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           + N+LKL       M   GI+P V + N+LIKALC+ +  +  A  +  EM + G +PD 
Sbjct: 188 DGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCR-AHQIRPAILMMEEMGSYGLSPDE 246

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            T+ TL+ G    G +  A  + ++M    C  + VT   L++G C+   +EE +   +E
Sbjct: 247 KTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDE 306

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M ++G  P+ FT++SL++GLC+ G    A+E+L +M+ +   P+I TY++L+ GLCK G+
Sbjct: 307 MSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGE 366

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           ++EAVEIL++M L+   P+   Y  +IS  C   + +EA      +   GI P+  T+  
Sbjct: 367 VEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF-- 424

Query: 372 HIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                N+++QGLC T+ +R A +++  M+ +    D  TY+ LI   C +G + ++  ++
Sbjct: 425 -----NSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLL 479

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E+   GC  +  T++ ++      +++ +A E+ 
Sbjct: 480 KEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIF 514



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 198/397 (49%), Gaps = 50/397 (12%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  + + L   D  + E   GFR D  TF+ +++ L      + A ++LD + +E  D  
Sbjct: 294 EGRIEEVLSFIDEMSNE---GFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFD-- 348

Query: 85  EDIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            DIF   S+  G  ++    +A+ + ++M      P   +Y T+++ L +ENQ++ A   
Sbjct: 349 PDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATEL 408

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG------- 195
            R +   GI P V + N LI+ LC  +     A ++F EM  +GC PD +TY        
Sbjct: 409 ARVLTSKGILPDVCTFNSLIQGLCL-TNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLC 467

Query: 196 ----------------------------TLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
                                       TLI+G C+  +I EA+E+F EME +  S  VV
Sbjct: 468 SRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVV 527

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY +LI+GLC+++ VEEA +L ++M  +G++P+ FTY+SL+   C+ G   +A +++Q M
Sbjct: 528 TYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTM 587

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
            S    P+ VTY TL+ GL K G+++ A  +L  ++L+G+      Y  +I       + 
Sbjct: 588 TSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRT 647

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            EA     EM+  G  P+ +T+ +       V +GLC
Sbjct: 648 SEAVRLFREMMEKGDPPDAVTYKV-------VFRGLC 677



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 8/205 (3%)

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVE 317
           P  FT   L D L +       ++LL     + +  P+ V Y  +L  L K+G       
Sbjct: 67  PQNFTPKQLRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRR 126

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +L  MK  G +   G +  +I  +     + EA   +D      I        L    +N
Sbjct: 127 VLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVD------IMEEEFGLKLDAFTYN 180

Query: 378 TVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++  L   +  +  ++  S M +R I  D  T++ LI   C+   I  +  +++E+   
Sbjct: 181 FLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSY 240

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQA 461
           G  PDE T++ +M    +   M  A
Sbjct: 241 GLSPDEKTFTTLMQGFIEEGNMNGA 265


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 242/459 (52%), Gaps = 15/459 (3%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W  ++   +++ +IR +++++ AL IF  A  +Y   F H+  T+  +I +L  A  F P
Sbjct: 46  WPQRLFPNRLVAMIRRQQNLDLALQIFHYA-GKYHPAFTHNYDTYHAIIYRLSRARAFEP 104

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
            E LL  +     + +ED+F+++ R YG   RP  A++ F +++ FG   + +S  T+L 
Sbjct: 105 VESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLN 164

Query: 129 ILVEENQLKLAFRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            LV+ N+       +++ + + G+ P V + N+LIKALCK +  ++ A K+F EMP+ G 
Sbjct: 165 ALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKN-DVEGARKVFDEMPSMGI 223

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            P+  TY T++ G    G +  AK +F E+      P   TYT L++G  +     +A++
Sbjct: 224 VPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVK 283

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           + +EM   GVEPN  TY  ++ G CK   S +A+ LL  M+ K++ PN      +++ LC
Sbjct: 284 VMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLC 343

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
            EG+++EA ++ +++  +   PD  +   +I   C  G   EA    +E   G I+    
Sbjct: 344 GEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTIS---- 399

Query: 368 TWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
                +  +NT++ G+C+  +   A +++  M  +    +  TY+ LI  F K G   + 
Sbjct: 400 ----SLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEV 455

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++V+E++  GCL +E T+  ++  L    K+ +  ELL
Sbjct: 456 IKVVEEMLDKGCLLNESTYLILVEGLL---KLGKREELL 491


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 231/442 (52%), Gaps = 15/442 (3%)

Query: 45  GFRHDNS-TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRP 101
           GF   N  T++ +++ L  A Q   A+ L + +   K   T D+    C     GR  + 
Sbjct: 3   GFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKW--TPDVVSYSCLINSLGRAGKW 60

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A+ V  +M+  GC+P   +Y T++  L +  Q   A R    MR+ G  P V + N L
Sbjct: 61  EAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCL 120

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I  L K +G +  AF +F EM  RGC PD++TY +LI GL ++G+  +A EL +EME   
Sbjct: 121 ISTLGK-AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG 179

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P V+TY+SLI GL +     +A +LF+EM+ +G +P+  T+++LMD L K G    A+
Sbjct: 180 CPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDAL 239

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ELL  M  +  +P +VTY+ L+ G  K G L EA  +LD MK  G KPD   Y  +I+  
Sbjct: 240 ELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGL 299

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
               +  EA   L +M   G  P+ +T       +NT++ GL K    N A +++  M++
Sbjct: 300 IKASQLDEACQVLKKMEKEGCPPDTIT-------YNTLINGLGKAGLLNDAGRLFDRMKS 352

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  + D +TYS+LIT   K   +  +  + +E+   G  PD  T+ +++T L    ++  
Sbjct: 353 KGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDD 412

Query: 461 AAELLLLELMNKCVEAEVDIQN 482
            A+ L  E+  K +  +V   N
Sbjct: 413 -ADRLFSEMRGKGLSPDVITYN 433



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 214/422 (50%), Gaps = 7/422 (1%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++ +IS L  A +   A  L   + +  C      + S+  G G+V R   
Sbjct: 108 NGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQK 167

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM + ++M+  GC P   +Y +++  L ++ +   AF+ ++ M+  G +P   +   L+ 
Sbjct: 168 AMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMD 227

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL K +G +D A ++  EM  RG  P   TY  LI G  ++G + EA  L  EM+   C 
Sbjct: 228 ALGK-AGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCK 286

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY+ LI GL ++  ++EA ++ ++M  +G  P+  TY++L++GL K G  + A  L
Sbjct: 287 PDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRL 346

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M SK   P++VTYSTL+  L K  +++ A  + + M+  G++PD   Y  II+    
Sbjct: 347 FDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGK 406

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
            G+  +A     EM   G++P+ +T++  +   N++ +G        A +++  M+   +
Sbjct: 407 AGQVDDADRLFSEMRGKGLSPDVITYNAFL---NSLGRG---GRFKEARKIFEDMKESGL 460

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D  TY +L+    K  ++  +  ++ EL+  GC  D   +   +  L     + +A E
Sbjct: 461 LPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHE 520

Query: 464 LL 465
           LL
Sbjct: 521 LL 522



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 213/422 (50%), Gaps = 7/422 (1%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T+S +I+ L    +   A  L   + +         F ++    G+  R  D
Sbjct: 178 HGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDD 237

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ + D+MKE G +P   +Y  ++A   +   L  A+     M+  G +P V + + LI 
Sbjct: 238 ALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLIT 297

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K S  +D A ++ ++M   GC PD+ TY TLINGL + G + +A  LF  M++K C+
Sbjct: 298 GLIKAS-QLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCN 356

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY++LI  L ++  VE A  LFEEM S G++P++FTY S++  L K G    A  L
Sbjct: 357 PDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRL 416

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M  K   P+++TY+  LN L + G+ +EA +I + MK  GL PD   Y  ++     
Sbjct: 417 FSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSK 476

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
             +  +A   L E++  G   + L +   + I  +        + + A ++     ++ +
Sbjct: 477 TKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSW------GNVDEAHELLQFANSKGL 530

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
              + +Y++LI    K G + ++   +++L   G  PD  ++S++++AL    ++  A E
Sbjct: 531 WPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFE 590

Query: 464 LL 465
           LL
Sbjct: 591 LL 592



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 176/331 (53%), Gaps = 1/331 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG + D  T+S +I+ L+ A+Q   A  +L ++ KE C      + ++  G G+     D
Sbjct: 283 NGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLND 342

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A R+FD+MK  GC P   +Y T++  L +  +++ A   +  M  +GIQP + +   +I 
Sbjct: 343 AGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIIT 402

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K +G +D A ++F EM  +G +PD  TY   +N L R G+  EA+++F++M+     
Sbjct: 403 VLGK-AGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLL 461

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V TY +L+ GL ++K V++A  L +E+  +G   +   +   ++ L   G   +A EL
Sbjct: 462 PDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHEL 521

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           LQ   SK   P   +Y+ L++ L K G++ EA   L+ +K QG KPD   Y  +IS    
Sbjct: 522 LQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQ 581

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
            G+   A   L+EM   G+  +  ++S  +R
Sbjct: 582 TGQIDTAFELLEEMSKRGLKLSPRSYSNLVR 612


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/470 (31%), Positives = 245/470 (52%), Gaps = 20/470 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+    + LI+ EKD   AL IF+    +   GF H+++T+S +I KL    +F   + L
Sbjct: 57  ISHESAINLIKREKDPQHALEIFNMVGEQ--KGFNHNHATYSTLIHKLAQTKKFHAVDAL 114

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE-PTPKSYITVLAILV 131
           L ++  E C   E+IFL++ + + +       + +F  ++    E P+ K+  T L ILV
Sbjct: 115 LHQMTYETCKFHENIFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSLKAISTCLNILV 174

Query: 132 EENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRGCTP 189
           E  Q+ LA +   ++ E + ++P     N+L+K  CK SG +++A ++  EM  +R   P
Sbjct: 175 ESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCK-SGDLESALEVMHEMKKSRRSYP 233

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           +  TY TLI+GLC  G++ EA ELF+EM +K    P  +TY+ LI G C     + A ++
Sbjct: 234 NVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKI 293

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            E MRS G +PNVF YS LM+G CK G   +A E+   M S   +P+ V Y+TL+N  C 
Sbjct: 294 MEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCG 353

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G++ EA+E+L  M     K DA  +  ++   C  G++ EA   L+ +   G+  N+ +
Sbjct: 354 VGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGS 413

Query: 369 WSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           + +       V+  LC K +  ++  +   M +R       T + L+ C C+ G +  + 
Sbjct: 414 YRI-------VLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAV 466

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
             +  L   G  P+  +W+ ++  +   RK+     L + EL+++ VE E
Sbjct: 467 TALFGLTQMGFTPEPKSWAHLIEYICRERKL-----LFVFELVDELVEKE 511


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 207/372 (55%), Gaps = 10/372 (2%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           GR HR  +A+ +   M+  GC P   +Y T++A      ++  A R    MRE G++P +
Sbjct: 202 GRGHRK-EALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNL 260

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N ++  +CK +G M+ A K+F EM   G  PD  +Y TL+ G C+ G  +EA  +F 
Sbjct: 261 VTFNSMVNGMCK-AGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFA 319

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM  K   P VVT+TSLI+ +C++ ++E A+ L  +MR +G++ N  T+++L+DG CK G
Sbjct: 320 EMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKG 379

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
               A+  ++ M   R +P++V Y+ L+NG C  G++ EA E+L  M+ +GLKPD   Y 
Sbjct: 380 FLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYS 439

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQV 394
            IIS +C       A     +M+  G+ P+ +T+S  IR+       LC +   + A  +
Sbjct: 440 TIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRV-------LCGEKRLSDAHVL 492

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           + +M    +  D  TY+SLI   CK+G++  +  + D++V  G LPD  T+S ++  L  
Sbjct: 493 FKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSK 552

Query: 455 RRKMRQAAELLL 466
             +  +A +LL 
Sbjct: 553 SARAMEAQQLLF 564



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 194/354 (54%), Gaps = 14/354 (3%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           G  P+  +Y  VL + + +  L  A RF+  M   G+ P V + N+L++ALC   G    
Sbjct: 151 GYVPSVLAYNAVL-LALSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALC-GRGHRKE 208

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A  I R+M   GC P+  TY TL+    R G++  A+ L   M      P +VT+ S++N
Sbjct: 209 ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVN 268

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G+C++  +E+A ++F+EM  +G+ P+  +Y++L+ G CK GCS +A+ +   M  K   P
Sbjct: 269 GMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMP 328

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++VT+++L++ +CK G L+ AV ++ +M+ +GL+ +   +  +I  FC  G       FL
Sbjct: 329 DVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKG-------FL 381

Query: 355 DEMVLG--GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
           D+ +L   G+   R+  S  +  +N ++ G C     + A ++   M  + +  D +TYS
Sbjct: 382 DDALLAVRGMKQCRIKPS--VVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYS 439

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++I+ +CK  D H +  +  +++  G LPD  T+S+++  L   +++  A  L 
Sbjct: 440 TIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLF 493



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 219/444 (49%), Gaps = 11/444 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  TF+ M++ +  A +   A  + D + +E        + ++  GY +     +A
Sbjct: 255 GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEA 314

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + VF +M + G  P   ++ +++ ++ +   L+ A    R MRE G+Q    +   LI  
Sbjct: 315 LSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDG 374

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +D A    R M      P    Y  LING C +G++ EA+EL  EME K   P
Sbjct: 375 FCKK-GFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 433

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY+++I+  C++     A  L ++M  KGV P+  TYSSL+  LC     S A  L 
Sbjct: 434 DVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLF 493

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + MI    +P+  TY++L++G CKEG ++ A+ + D+M   G+ PD   Y  +I+     
Sbjct: 494 KNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKS 553

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWS--LH------IRIHNTVVQGLC-KTDPNRAFQVY 395
            +  EA   L ++      P    +   +H      ++    +++G C K   N A +VY
Sbjct: 554 ARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVY 613

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            SM +R+ ++D   YS LI   C+ G++ K+     +++  G  P+  +  +++  L++ 
Sbjct: 614 QSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFE- 672

Query: 456 RKMRQAAELLLLELMNKCVEAEVD 479
             M   A+ ++ +L+N C  A+ +
Sbjct: 673 NGMVVEADQVIQQLLNYCSLADAE 696



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 149/373 (39%), Gaps = 55/373 (14%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G + +  TF+ +I           A  LL     ++C I   +  + ++  GY  V R  
Sbjct: 360 GLQMNEVTFTALIDGFCKKGFLDDA--LLAVRGMKQCRIKPSVVCYNALINGYCMVGRMD 417

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +  +M+  G +P   +Y T+++   +      AF   + M E G+ P   + + LI
Sbjct: 418 EARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 477

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           + LC      DA   +F+ M   G  PD +TY +LI+G C+ G +  A  L  +M     
Sbjct: 478 RVLCGEKRLSDAHV-LFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGV 536

Query: 223 SPTVVTYTSLINGLCQS-------------------------------------KSV--- 242
            P VVTY+ LINGL +S                                     KSV   
Sbjct: 537 LPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLAL 596

Query: 243 ----------EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
                      EA ++++ M  +    +   YS L+ G C+ G   +A+   + M+    
Sbjct: 597 LKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGF 656

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            PN  +  +L+ GL + G + EA +++ ++       DA     +I    + G      +
Sbjct: 657 APNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAVLD 716

Query: 353 FLDEMVLGGITPN 365
            L  M   G+ P+
Sbjct: 717 VLHGMAKDGLLPS 729



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 137/305 (44%), Gaps = 22/305 (7%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T+S +IS          A +L  ++ ++        + S+ R      R  
Sbjct: 428 AKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLS 487

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F  M + G +P   +Y +++    +E  ++ A   +  M + G+ P V + +VLI
Sbjct: 488 DAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLI 547

Query: 163 KALCKNSGTMDAA---FKIFREMPNRGCTPDSYTYGTLIN---------------GLCRL 204
             L K++  M+A    FK++ E P     P +  Y  L++               G C  
Sbjct: 548 NGLSKSARAMEAQQLLFKLYHEDP----IPANTKYDALMHCCRKAELKSVLALLKGFCMK 603

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G + EA ++++ M  +  +     Y+ LI+G C++ +V +A+   ++M   G  PN  + 
Sbjct: 604 GLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTST 663

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            SL+ GL + G   +A +++Q +++     +      L++    EG +   +++L  M  
Sbjct: 664 ISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAK 723

Query: 325 QGLKP 329
            GL P
Sbjct: 724 DGLLP 728


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 149/497 (29%), Positives = 251/497 (50%), Gaps = 44/497 (8%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T+IT  Q+ +L+    DV  ++ +F  A  +   G+ H    + ++I KL +A +F+  +
Sbjct: 74  TRITPYQLCKLLELPLDVPTSMELFQWAGTQ--KGYCHMFDVYYMLIDKLGAAGEFKTID 131

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAI 129
            LL ++ +E     E +F+ I + YGR   P  A R+   M+  + CEPT +SY  VL +
Sbjct: 132 ALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDV 191

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L+  N  K+    +  M   GI P V +  V++KALC     +D+A  + ++M   GC P
Sbjct: 192 LLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCL-VNEVDSACALLKDMTRHGCVP 250

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           ++  Y TLI+ L ++G++ E  +L +EM    C P V T+   I+GLC+   + EA +L 
Sbjct: 251 NAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLV 310

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL------------------------- 284
           + M  +G  PN FTY  LM GLC+ G   +A  LL                         
Sbjct: 311 DRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLD 370

Query: 285 -------QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
                  + M+S    P+I TY+TL+ GLCK+G L  A E+++ M+++G +P+   Y  +
Sbjct: 371 EAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTIL 430

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I  FC  G+ +EA N LDEM   G+  N + +       N ++  LCK +    A  ++ 
Sbjct: 431 IDRFCKEGRLEEARNVLDEMSGKGLALNAVGY-------NCLISALCKDEKVQDALNMFG 483

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M ++    D  T++SLI   CK     ++  +  +++L+G + +  T++ ++ A   R 
Sbjct: 484 DMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRG 543

Query: 457 KMRQAAELLLLELMNKC 473
            M++A +L+   L   C
Sbjct: 544 AMQEALKLVNDMLFRGC 560



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 227/458 (49%), Gaps = 18/458 (3%)

Query: 13  ITSAQVLQ-LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           + +A V Q LI A   V +   +          G   D +TF+  I  L    +   A  
Sbjct: 249 VPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAK 308

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           L+DR+           +  +  G  R+ +  +A  + +K+      P    + T++   V
Sbjct: 309 LVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLINGYV 364

Query: 132 EENQLKLA-FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
              +L  A    +  M  +G  P + + N LI  LCK  G + +A ++  EM  +GC P+
Sbjct: 365 SRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCK-KGYLVSARELMNEMQIKGCEPN 423

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY  LI+  C+ G++ EA+ +  EM  K  +   V Y  LI+ LC+ + V++A+ +F 
Sbjct: 424 VITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFG 483

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M SKG +P++FT++SL+ GLCK     +A+ L Q M+ +    N +TY+TL++   + G
Sbjct: 484 DMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRG 543

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            +QEA+++++ M  +G   D   Y  +I   C  G  ++     ++M+  G+ PN ++  
Sbjct: 544 AMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISC- 602

Query: 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N ++ GLC+T +   A +    M +R ++ D +TY+SLI   CK G   ++  +
Sbjct: 603 ------NILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNL 656

Query: 430 VDELVLDGCLPDEGTWSAVMTALWD-RRKMRQAAELLL 466
            D+L ++G  PD  T++ +++  W  +  M   A LLL
Sbjct: 657 FDKLQVEGICPDAITYNTLIS--WHCKEGMFDDAHLLL 692



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 210/410 (51%), Gaps = 18/410 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRP 101
           GF  ++ T+ +++  L    +   A  LL++V      +    F ++  GY   GR+   
Sbjct: 317 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVL----FNTLINGYVSRGRLDEA 372

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              M   + M   GC P   +Y T++  L ++  L  A      M+  G +P V +  +L
Sbjct: 373 KAVMH--ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTIL 430

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK  G ++ A  +  EM  +G   ++  Y  LI+ LC+  K+ +A  +F +M +K 
Sbjct: 431 IDRFCK-EGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKG 489

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P + T+ SLI GLC+    EEA+ L+++M  +GV  N  TY++L+    + G   +A+
Sbjct: 490 CKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEAL 549

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +L+  M+ +    + +TY+ L+  LC+ G +++ + + + M  +GL P+      +I+  
Sbjct: 550 KLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 609

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
           C  G  Q A  FL +M+  G+TP+ +T+       N+++ GLCKT     A  ++  ++ 
Sbjct: 610 CRTGNIQHALEFLRDMIHRGLTPDIVTY-------NSLINGLCKTGRAQEALNLFDKLQV 662

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
             I  D++TY++LI+  CK+G    +  ++   V  G +P+E TW  +++
Sbjct: 663 EGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVS 712



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 179/334 (53%), Gaps = 3/334 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I  L        A +L++ +  + C+     +  +   + +  R  +A  V 
Sbjct: 388 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 447

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M   G       Y  +++ L ++ +++ A   +  M   G +P + + N LI  LCK 
Sbjct: 448 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK- 506

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
               + A  ++++M   G   ++ TY TLI+   R G + EA +L  +M  + C    +T
Sbjct: 507 VNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 566

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  LI  LC++ ++E+ + LFE+M SKG+ PN  + + L++GLC+ G    A+E L+ MI
Sbjct: 567 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMI 626

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   P+IVTY++L+NGLCK G+ QEA+ + D+++++G+ PDA  Y  +IS  C  G + 
Sbjct: 627 HRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFD 686

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           +A   L   V  G  PN +TW  +I + N + +G
Sbjct: 687 DAHLLLSRGVDSGFIPNEVTW--YILVSNFIKEG 718



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 5/213 (2%)

Query: 35  FDSATAEYAN----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           F+ A   Y +    G   +  T++ +I   +     + A  L++ +    C + +  +  
Sbjct: 510 FEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 569

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + +   R       + +F+ M   G  P   S   ++  L     ++ A  F R M   G
Sbjct: 570 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 629

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           + P + + N LI  LCK +G    A  +F ++   G  PD+ TY TLI+  C+ G   +A
Sbjct: 630 LTPDIVTYNSLINGLCK-TGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 688

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             L          P  VT+  L++   +    E
Sbjct: 689 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 225/454 (49%), Gaps = 45/454 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D+ T+ L+I  L   NQ   A  +LD+           ++  + R + +  R  DA
Sbjct: 155 GYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDA 214

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F  +      P   +Y  ++     +N    A  F + M E  + P V + N+LI  
Sbjct: 215 LEIFRNIPS----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDG 270

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK S T D A ++  EM +RG TPD+ T+ ++++GLC+ GK   A  L   M  + C P
Sbjct: 271 LCKASKT-DKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRP 329

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           +  TY +LI+GLC+ ++V+ A  L +E  S G  P+V TYS L DGLCK G   +A EL+
Sbjct: 330 SCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELV 389

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   PN+VTY+TL++GLCK  K ++A E+L+ +   G  PD   Y  I+   C  
Sbjct: 390 KEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKE 449

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+  +A   ++ M+  G TP+ +T++        +++GLC+T   + A  ++  M ++  
Sbjct: 450 GRLDKALKMVEGMLKRGCTPSVITYT-------ALMEGLCRTGRVDEAHHIFKEMVSKDC 502

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVD-------------------------------- 431
           + D+L Y SL+  +CK     ++ ++VD                                
Sbjct: 503 TADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFE 562

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++   GC+P+  T++ VM  L    K+ +A   L
Sbjct: 563 DMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFL 596



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 225/459 (49%), Gaps = 51/459 (11%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           +W   +  A V ++++  KD   A+V F  A      GF+H  STF              
Sbjct: 86  QWRGTLQPAVVSRVLQRLKDPQTAIVFFVWAGDR---GFKH--STF-------------- 126

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
                           T + FL      G   R + AM  F++M + G  P   +Y  V+
Sbjct: 127 ----------------TRNCFLQTLLENGSSDR-IPAM--FERMLDAGYAPDSYTYHLVI 167

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
             L + NQ+  AF      +  G +P V+   +L +A CK +G +  A +IFR +P    
Sbjct: 168 KSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCK-TGRLKDALEIFRNIP---- 222

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           +PD+  Y  +I+G CR      A E  KEM  +  +P V TY  LI+GLC++   ++A  
Sbjct: 223 SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASE 282

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +  EM  +GV P+  T++S+MDGLCK G   +A  LL +M  +  RP+  TY+TL++GLC
Sbjct: 283 MLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLC 342

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K+  +  A +++D     G  PD   Y  +    C  G+  EA   + EM   G TPN +
Sbjct: 343 KQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLV 402

Query: 368 TWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+       NT++ GLCK +   +A+++  S+ +     D +TY+ ++   CK+G + K+
Sbjct: 403 TY-------NTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKA 455

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++V+ ++  GC P   T++A+M  L    ++ +A  + 
Sbjct: 456 LKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIF 494



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 223/459 (48%), Gaps = 41/459 (8%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++++I  L  A++   A ++L  +           F SI  G  +  +   A  + 
Sbjct: 260 DVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLL 319

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M E  C P+  +Y T+++ L ++  +  A          G  P V + ++L   LCK 
Sbjct: 320 AVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKR 379

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D AF++ +EM  +GCTP+  TY TLI+GLC+  K  +A EL + + +    P VVT
Sbjct: 380 -GRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVT 438

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT +++GLC+   +++A+++ E M  +G  P+V TY++LM+GLC+ G   +A  + + M+
Sbjct: 439 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 498

Query: 289 SK--------------------------------RHRPNIVTYSTLLNGLCKEGKLQEAV 316
           SK                                R  P I  Y+ L++G CKEG+L E  
Sbjct: 499 SKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIP 558

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            + + M  +G  P+   Y  ++   C  GK  EA  FL+ M   G  P+ +++       
Sbjct: 559 NVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSY------- 611

Query: 377 NTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N ++ GL K + P  A QV   M    I  D++TY++L+  FCK+     +  I+  ++ 
Sbjct: 612 NIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIK 671

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            G  PD  T++ +++ L    ++  A EL+   L N CV
Sbjct: 672 AGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCV 710



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 230/445 (51%), Gaps = 20/445 (4%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +++V++A  + D   +   +GF  D  T+S++   L    +   A +L+  ++ + C   
Sbjct: 344 QQNVDRAKDLVDEFVS---SGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPN 400

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  +   A  + + +   G  P   +Y  ++  L +E +L  A +   
Sbjct: 401 LVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVE 460

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M + G  P V +   L++ LC+ +G +D A  IF+EM ++ CT D+  Y +L+NG C+ 
Sbjct: 461 GMLKRGCTPSVITYTALMEGLCR-TGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKS 519

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            +  EA+++   +     +P +  Y +L++G C+   ++E   +FE+M  +G  PN+ TY
Sbjct: 520 SRTKEAQKVVDGIRG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTY 576

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + +MDGLCK G   +A   L+ M S    P++V+Y+ +++GL K  K +EA ++LD+M  
Sbjct: 577 NIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQ 636

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G+ PDA  Y  +++ FC   ++ +A   L  M+  G+ P+ +T+       NT++ GL 
Sbjct: 637 AGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTY-------NTLISGLS 689

Query: 385 KTDPNRAFQVYLSM----RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           +T  NR    Y  M    RN  +     TY+++I   CK+G + ++  ++D +   G   
Sbjct: 690 QT--NRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEA 747

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
           +  T++  +  L    ++ +A+ LL
Sbjct: 748 NTVTYNIFIDRLCKEGRLDEASSLL 772



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 218/486 (44%), Gaps = 67/486 (13%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++GF  D  T+++++  L    +   A  +++ + K  C  +   + ++  G  R  R  
Sbjct: 429 SSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVD 488

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +F +M    C     +Y++++    + ++ K A +    +R     P +   N L+
Sbjct: 489 EAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDVYNALM 545

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G +D    +F +M  RGC P+  TY  +++GLC+ GK+ EA    + M +  C
Sbjct: 546 DGYCKE-GRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 604

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV+Y  +I+GL ++   +EA ++ ++M   G+ P+  TY++LM   CK      A+ 
Sbjct: 605 VPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVG 664

Query: 283 LLQMMISKRHRPNIVTYSTLLNGL------------------------------------ 306
           +L+ MI     P+ VTY+TL++GL                                    
Sbjct: 665 ILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRL 724

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM--------- 357
           CKEG L++A+ ++D M   G++ +   Y   I   C  G+  EA++ L EM         
Sbjct: 725 CKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSY 784

Query: 358 ---VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP---------------NRAFQVYLSMR 399
              ++G     +L  +  +      V+GLC T                 + A  +   M 
Sbjct: 785 TTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMV 844

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            R  S   +TY+ +ITC CK   + K+  + DE+ + G +    +++ ++  L  + + +
Sbjct: 845 QRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGK 904

Query: 460 QAAELL 465
           +A ++L
Sbjct: 905 EALQVL 910



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 166/400 (41%), Gaps = 82/400 (20%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           D++ ++  GY +  R  +   VF+ M   GC P  K+Y  V+  L +  ++  AF F   
Sbjct: 539 DVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLES 598

Query: 146 MREIGIQPCVASLNVLIKALCKNSGT---------------------------------- 171
           M   G  P V S N++I  L K S                                    
Sbjct: 599 MHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEER 658

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV-VTYT 230
            D A  I + M   G  PD+ TY TLI+GL +  ++ +A EL  EM    C  +   TY 
Sbjct: 659 FDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYN 718

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++I+ LC+   +++A+ L + M   GVE N  TY+  +D LCK G   +A  LL  M + 
Sbjct: 719 TIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTL 778

Query: 291 RHRPNIVTYSTLLNGLCKE------------------------------------GKLQE 314
           R     V+Y+T++ GLCK                                      +L E
Sbjct: 779 RDE---VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDE 835

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+ +L  M  +G  P    Y  +I+C C + K  +A    DEM + GI  + +++++   
Sbjct: 836 ALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV--- 892

Query: 375 IHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSL 413
               ++ GLC     + A QV   M +    +D L +  +
Sbjct: 893 ----LIYGLCGQGRGKEALQVLEEMASSDCEIDDLKWEDV 928



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 167/333 (50%), Gaps = 12/333 (3%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           ++ G   D  +++++I  L  A++ + A  +LD++ +         + ++   + +  R 
Sbjct: 600 HSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERF 659

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS---- 157
            DA+ +   M + G +P   +Y T+++ L + N+L  A+     M   G   CV S    
Sbjct: 660 DDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG---CVVSACTT 716

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N +I  LCK  G +  A  +   M   G   ++ TY   I+ LC+ G++ EA  L  EM
Sbjct: 717 YNTIIDRLCKE-GCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 775

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS-KGVEPNVFTYSSLMDGLCKGGC 276
           +T       V+YT++I GLC+++ ++ A +L  EM + KG+     T++ L+D   K   
Sbjct: 776 DTLR---DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKR 832

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A+ LL +M+ +   P+++TY+ ++  LCK  K+ +A E+ D M ++G+   +  Y  
Sbjct: 833 LDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV 892

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           +I   C  G+ +EA   L+EM       + L W
Sbjct: 893 LIYGLCGQGRGKEALQVLEEMASSDCEIDDLKW 925



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 110/235 (46%), Gaps = 12/235 (5%)

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
           K  + A+  F     +G + + FT +  +  L + G S +   + + M+   + P+  TY
Sbjct: 104 KDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTY 163

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
             ++  LC+  ++ +A  +LD+ K++G KP+  +Y  +   FC  G+ ++A      +  
Sbjct: 164 HLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIP- 222

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
              +P+ + +       N ++ G C K D + A +    M  R ++ D  TY+ LI   C
Sbjct: 223 ---SPDAIAY-------NAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLC 272

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           K     K++ ++ E+V  G  PD  T++++M  L    K  +A  LL +     C
Sbjct: 273 KASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNC 327


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 148/516 (28%), Positives = 251/516 (48%), Gaps = 65/516 (12%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           KIT  Q+ +L+    +V+ ++ +F    ++  NG+RH    + ++I KL +  +F+  + 
Sbjct: 75  KITPFQLYKLLELPLNVSTSMELFSWTGSQ--NGYRHSFDVYQVLIGKLGANGEFKTIDR 132

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAIL 130
           LL ++  E     E +F+SI R Y +   P    R+  +M+  + CEPT KSY  VL IL
Sbjct: 133 LLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEIL 192

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V  N  K+A   +  M    I P + +  V++KA C     +D+A  + R+M   GC P+
Sbjct: 193 VSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCA-VNEIDSALSLLRDMTKHGCVPN 251

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           S  Y TLI+ L +  ++ EA +L +EM    C P   T+  +I GLC+   + EA ++  
Sbjct: 252 SVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVN 311

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL-------------------------- 284
            M  +G  P+  TY  LM+GLCK G    A +L                           
Sbjct: 312 RMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDD 371

Query: 285 ------QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
                  M+ S    P++ TY++L+ G  KEG +  A+E+L  M+ +G KP+   Y  ++
Sbjct: 372 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILV 431

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI-------RI---------------- 375
             FC +GK  EA N L+EM   G+ PN + ++  I       RI                
Sbjct: 432 DGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK 491

Query: 376 -----HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N+++ GLC+ D    A  +   M +  +  +++TY++LI  F ++G+I ++ ++
Sbjct: 492 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKL 551

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V+E+V  G   DE T+++++  L    ++ +A  L 
Sbjct: 552 VNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLF 587



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 229/446 (51%), Gaps = 29/446 (6%)

Query: 24  AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI 83
           A K VN+ L+           GF  D+ T+  +++ L    +   A+DL  R+ K +  I
Sbjct: 306 AAKMVNRMLI----------RGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVI 355

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVF-DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
               F ++  G+    R  DA  V  D +  +G  P   +Y +++    +E  + LA   
Sbjct: 356 ----FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEV 411

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
              MR  G +P V S  +L+   CK  G +D A+ +  EM   G  P++  +  LI+  C
Sbjct: 412 LHDMRNKGCKPNVYSYTILVDGFCK-LGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           +  +I EA E+F+EM  K C P V T+ SLI+GLC+   ++ A+ L  +M S+GV  N  
Sbjct: 471 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 530

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY++L++   + G   +A +L+  M+ +    + +TY++L+ GLC+ G++ +A  + ++M
Sbjct: 531 TYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
              G  P       +I+  C  G  +EA  F  EMVL G TP+ +T+       N+++ G
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTF-------NSLING 643

Query: 383 LCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LC+         ++  ++   I  D++T+++L++  CK G ++ +  ++DE + DG +P+
Sbjct: 644 LCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 703

Query: 442 EGTWSAVMTAL-----WDRRKMRQAA 462
             TWS ++ ++      DRR+   AA
Sbjct: 704 HRTWSILLQSIIPQETLDRRRFYNAA 729



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 216/446 (48%), Gaps = 41/446 (9%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           ++++++  LVS N  + A ++   +   K   T   F  + + +  V+    A+ +   M
Sbjct: 184 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDM 243

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + GC P    Y T++  L + N++  A +    M  +G  P   + N +I  LCK    
Sbjct: 244 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRI 303

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-------------- 217
            +AA K+   M  RG  PD  TYG L+NGLC++G++  AK+LF  +              
Sbjct: 304 NEAA-KMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHG 362

Query: 218 --------ETKAC----------SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
                   + KA            P V TY SLI G  +   V  A+ +  +MR+KG +P
Sbjct: 363 FVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKP 422

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           NV++Y+ L+DG CK G   +A  +L  M +   +PN V ++ L++  CKE ++ EAVEI 
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 482

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
             M  +G KPD   +  +IS  C++ + + A   L +M+  G+  N +T+       NT+
Sbjct: 483 REMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY-------NTL 535

Query: 380 VQG-LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +   L + +   A ++   M  +   +D +TY+SLI   C+ G++ K+  + ++++ DG 
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAEL 464
            P   + + ++  L     + +A E 
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEF 621



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 87/199 (43%), Gaps = 8/199 (4%)

Query: 278 SQAMELLQMMISKR-HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
           S +MEL     S+  +R +   Y  L+  L   G+ +    +L +MK +G+     L+  
Sbjct: 92  STSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFIS 151

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVY 395
           I+  +   G   +    + EM       N  +     + +N V++ L   + ++ A  V+
Sbjct: 152 IMRDYDKAGFPGQTTRLMLEM------RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVF 205

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M +R I     T+  ++  FC   +I  +  ++ ++   GC+P+   +  ++ +L   
Sbjct: 206 YDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKC 265

Query: 456 RKMRQAAELLLLELMNKCV 474
            ++ +A +LL    +  CV
Sbjct: 266 NRVNEALQLLEEMFLMGCV 284


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 133/422 (31%), Positives = 213/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+    TF+ +I+ L    +   A + LD +       T      I  G  ++ +   A
Sbjct: 169 GFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAA 228

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +    KM E  CEP   SY  ++  L +   +  A   + HMR IGI P V + N LI  
Sbjct: 229 IVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYG 288

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           +C NSG    A  +F+EM      PD  T+  L++ LC+ G + EA  +F +M   A  P
Sbjct: 289 MC-NSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEP 347

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VTY+SLI+G+C+S   +E+  L  EM S+ + P+V T+S  +D  CK G  S+A  ++
Sbjct: 348 DIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSII 407

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +MI +  RPN+VTY++L++G C   ++ EA ++ D M  +G  PD   Y  +I  +C  
Sbjct: 408 NLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKS 467

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSI 403
            +  EA    DEM   G+TPN +T       H T++ GLC+   P  A +++  M +   
Sbjct: 468 ERIDEAKQLFDEMSHKGLTPNSIT-------HTTLISGLCQAGRPYAAKELFKKMGSHGC 520

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D +TYS+L++ FCK G + ++  + + L      P+      ++  +    K+  A E
Sbjct: 521 PPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKE 580

Query: 464 LL 465
           L 
Sbjct: 581 LF 582



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 200/438 (45%), Gaps = 66/438 (15%)

Query: 92  CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151
           C+G G      DA+  F++M      P    +  +LA LV           YR M   G+
Sbjct: 77  CKG-GSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGV 135

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
              V +L +LI  LC +   +   F +  ++   G  P   T+ TLINGLC  G+I EA 
Sbjct: 136 SCSVYTLTILINCLC-HLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAM 194

Query: 212 E-----------------------------------LFKEMETKACSPTVVTYTSLINGL 236
           E                                     K+M    C P VV+Y+ +I+ L
Sbjct: 195 EQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSL 254

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+++ V EA+ LF  MRS G+ P V TY+SL+ G+C  G   QA  L + M+    +P++
Sbjct: 255 CKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDV 314

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           VT+S L++ LCKEG + EA+ +  +M    ++PD   Y  +I   C    ++E++  L+E
Sbjct: 315 VTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNE 374

Query: 357 MVLGGITPNRLTWSLHIRI----------------------------HNTVVQGLC-KTD 387
           M+   I P+ +T+S+ + +                            +N+++ G C  + 
Sbjct: 375 MLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQ 434

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            + A +V+  M N+  + D L+Y+ LI  +CK   I ++ ++ DE+   G  P+  T + 
Sbjct: 435 MDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTT 494

Query: 448 VMTALWDRRKMRQAAELL 465
           +++ L    +   A EL 
Sbjct: 495 LISGLCQAGRPYAAKELF 512



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 168/317 (52%), Gaps = 7/317 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRV---NKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           T++ +I  + ++ Q++ A  L   +   N +   +T  I +      G V   L+A+ VF
Sbjct: 281 TYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVV---LEALSVF 337

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            KM +   EP   +Y +++  + + +  K +      M    I+P V + ++ +   CK 
Sbjct: 338 GKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKK 397

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A  I   M  RG  P+  TY +L++G C   ++ EA+++F  M  K C+P V++
Sbjct: 398 -GMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLS 456

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  LI G C+S+ ++EA +LF+EM  KG+ PN  T+++L+ GLC+ G    A EL + M 
Sbjct: 457 YNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMG 516

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S    P+++TYSTLL+G CK G L EA+ + + +K   LKP+  +   ++   C  GK +
Sbjct: 517 SHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLE 576

Query: 349 EAANFLDEMVLGGITPN 365
           +A      + +  + P+
Sbjct: 577 DAKELFSSLSIEELQPD 593



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 157/299 (52%), Gaps = 13/299 (4%)

Query: 4   KTMFKWSTK---ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           K M +W+ K   +T + ++  +  E  V +AL +F             D  T+S +I  +
Sbjct: 303 KEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQI---AMEPDIVTYSSLIHGV 359

Query: 61  VSANQFRPAEDLLDRV---NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE 117
             ++ ++ +  LL+ +   N     +T  I++ +    G V    +A  + + M E G  
Sbjct: 360 CKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVS---EAQSIINLMIERGLR 416

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   +Y +++      +Q+  A + +  M   G  P V S N+LIK  CK S  +D A +
Sbjct: 417 PNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCK-SERIDEAKQ 475

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +F EM ++G TP+S T+ TLI+GLC+ G+ Y AKELFK+M +  C P ++TY++L++G C
Sbjct: 476 LFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFC 535

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           +   ++EA+ LFE ++   ++PN      L+ G+CK G    A EL   +  +  +P++
Sbjct: 536 KHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 158/323 (48%), Gaps = 11/323 (3%)

Query: 159 NVLIKALCKNSG--TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           N  ++  CK       D A   F +M +    P    +  L+  L R+        ++++
Sbjct: 70  NFAVRDKCKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRK 129

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           ME    S +V T T LIN LC    V     +  ++   G +P++ T+++L++GLC  G 
Sbjct: 130 MEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGR 189

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +AME L  ++S+ ++P + T++ ++NGLCK GK   A+  + +M     +P+   Y  
Sbjct: 190 IVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSI 249

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           II   C      EA +    M   GI+P  +T+       N+++ G+C +    +A  ++
Sbjct: 250 IIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTY-------NSLIYGMCNSGQWKQASILF 302

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M   ++  D +T+S L+   CK+G + ++  +  +++     PD  T+S+++  +  +
Sbjct: 303 KEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVC-K 361

Query: 456 RKMRQAAELLLLELMNKCVEAEV 478
             + + +  LL E++++ +  +V
Sbjct: 362 SSLWKESSTLLNEMLSRNIRPDV 384


>gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa]
 gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa]
          Length = 760

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 144/501 (28%), Positives = 253/501 (50%), Gaps = 42/501 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE-DLLDRV 76
           V  ++   +  + AL  F     E A   +HD  T   +I  L   +    A   +L+ +
Sbjct: 118 VYNVLHGARKPDHALQFF--RWVERAGLIQHDRETHMKIIQILGRYSMLNHARCIVLEDM 175

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
            K+  ++ ED+F+ +   YG+     +++++F KMKE G E + KSY  +  ++V + + 
Sbjct: 176 PKKGFELDEDMFVLLIDSYGKAGIVQESVKMFSKMKELGVERSVKSYNALFKVIVRKGRY 235

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
            +A RF+  M + GI P   + NVLI      S  +  A + + +M  RG +PD  TY T
Sbjct: 236 MMAKRFFNKMLDEGIGPTRHTYNVLIWGFFL-SMRLRTAVRFYEDMKVRGISPDVVTYNT 294

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +ING  R  ++ EA++LF EM+ K  +PTV++YT++I G      + + +RL EEM+S G
Sbjct: 295 MINGYYRHKRMEEAEKLFAEMKAKDIAPTVISYTTMIKGYFAVDRINDGLRLLEEMKSVG 354

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEA 315
           ++PN  TY++L+  LC  G  ++A ++L+ M+ +R  P +   +  LLN  CK G L+ A
Sbjct: 355 IKPNNVTYTTLLPDLCDAGKMTEAKDILKEMVRRRIAPKDNSIFLKLLNSQCKAGDLKAA 414

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIR 374
           V++LD M    +  +AG YG +I  FC   +Y +A  F+D+++   I    + T  +   
Sbjct: 415 VDVLDGMIKLSIPSEAGHYGVLIENFCKAEEYDQAVKFVDKLIENDIILRPQSTLEMESG 474

Query: 375 IHNTVVQGLC-----------------------------------KTDPNRAFQVYLSMR 399
            +N V+Q LC                                   +  P+ AF++   M 
Sbjct: 475 AYNPVIQYLCSHGQTGKAEILFRQLLKKGVEDPLAFNNLICGHAKEGTPDSAFEILKIMG 534

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            + I  D+  Y  LI  + +KG+   +   +D ++ DG LPD   + +VM +L++  ++ 
Sbjct: 535 RKGIPRDADAYRLLIESYLRKGEPADAKTALDSMIEDGHLPDSSVFRSVMESLYEDGRV- 593

Query: 460 QAAELLLLELMNKCVEAEVDI 480
           Q A  ++  ++ K V+  +D+
Sbjct: 594 QTASRVMKSMVEKGVKENMDL 614



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 158/323 (48%), Gaps = 16/323 (4%)

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G +  + K+F +M   G      +Y  L   + R G+   AK  F +M  +   PT  T
Sbjct: 197 AGIVQESVKMFSKMKELGVERSVKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHT 256

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  LI G   S  +  A+R +E+M+ +G+ P+V TY+++++G  +     +A +L   M 
Sbjct: 257 YNVLIWGFFLSMRLRTAVRFYEDMKVRGISPDVVTYNTMINGYYRHKRMEEAEKLFAEMK 316

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +K   P +++Y+T++ G     ++ + + +L+ MK  G+KP+   Y  ++   CD GK  
Sbjct: 317 AKDIAPTVISYTTMIKGYFAVDRINDGLRLLEEMKSVGIKPNNVTYTTLLPDLCDAGKMT 376

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
           EA + L EMV   I P     S+ +++ N+     CK  D   A  V   M   SI  ++
Sbjct: 377 EAKDILKEMVRRRIAPK--DNSIFLKLLNSQ----CKAGDLKAAVDVLDGMIKLSIPSEA 430

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCL--P------DEGTWSAVMTALWDRRKMR 459
             Y  LI  FCK  +  ++ + VD+L+ +  +  P      + G ++ V+  L    +  
Sbjct: 431 GHYGVLIENFCKAEEYDQAVKFVDKLIENDIILRPQSTLEMESGAYNPVIQYLCSHGQTG 490

Query: 460 QAAELLLLELMNKCVEAEVDIQN 482
           + AE+L  +L+ K VE  +   N
Sbjct: 491 K-AEILFRQLLKKGVEDPLAFNN 512



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 14/327 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           DNS F  +++    A   + A D+LD + K         +  +   + +      A++  
Sbjct: 394 DNSIFLKLLNSQCKAGDLKAAVDVLDGMIKLSIPSEAGHYGVLIENFCKAEEYDQAVKFV 453

Query: 109 DKMKEFGCEPTPKS--------YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           DK+ E      P+S        Y  V+  L    Q   A   +R + + G++  +A  N 
Sbjct: 454 DKLIENDIILRPQSTLEMESGAYNPVIQYLCSHGQTGKAEILFRQLLKKGVEDPLA-FNN 512

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI    K  GT D+AF+I + M  +G   D+  Y  LI    R G+  +AK     M   
Sbjct: 513 LICGHAK-EGTPDSAFEILKIMGRKGIPRDADAYRLLIESYLRKGEPADAKTALDSMIED 571

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P    + S++  L +   V+ A R+ + M  KGV+ N+   + +++ L   G   +A
Sbjct: 572 GHLPDSSVFRSVMESLYEDGRVQTASRVMKSMVEKGVKENMDLVAKILEALLMRGHEEEA 631

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +  + +++S +     V + +LL+ L ++GK   A+++LD    +    D   Y K++  
Sbjct: 632 LGRIDLLMSSQCN---VNFDSLLSILSEKGKTIAALKLLDFGLQRDCDIDFKSYDKVLDA 688

Query: 341 FCDIGKYQEAANFL-DEMVLGGITPNR 366
               GK   A + L   M  GG+T  R
Sbjct: 689 LLAAGKTLNAYSILCKIMEKGGVTSWR 715


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 233/438 (53%), Gaps = 12/438 (2%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL-DR 75
            V  +I+ +KD  KAL +F+S   E   GF+H  ST+  +I KL    +F   E++L D 
Sbjct: 9   HVTAVIKCQKDPMKALEMFNSMRKEV--GFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM 66

Query: 76  VNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
                  + E +++   + YGR  +  +A+ VF++M  + CEPT  SY  ++++LV+   
Sbjct: 67  RENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGY 126

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
              A + Y  MR+ GI P V S  + +K+ CK S    AA ++   M ++GC  +   Y 
Sbjct: 127 FDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRP-HAALRLLNNMSSQGCEMNVVAYC 185

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           T++ G        E  ELF +M     S  + T+  L+  LC+   V+E  +L +++  +
Sbjct: 186 TVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKR 245

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           GV PN+FTY+  + GLC+ G    A+ ++  +I +  +P+++TY+ L+ GLCK  K QEA
Sbjct: 246 GVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA 305

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
              L +M  +GL+PD+  Y  +I+ +C  G  Q A   + + V  G  P++ T+      
Sbjct: 306 EVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYR----- 360

Query: 376 HNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             +++ GLC + + NRA  ++     + I  + + Y++LI     +G I ++A++ +E+ 
Sbjct: 361 --SLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMS 418

Query: 435 LDGCLPDEGTWSAVMTAL 452
             G +P+  T++ ++  L
Sbjct: 419 EKGLIPEVQTFNILVNGL 436



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 221/431 (51%), Gaps = 21/431 (4%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR-PLD-AMRVF 108
           STF+ ++  L      +  E LLD+V K    +  ++F       G   R  LD A+R+ 
Sbjct: 217 STFNKLLRVLCKKGDVKECEKLLDKVIKR--GVLPNLFTYNLFIQGLCQRGELDGAVRMV 274

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             + E G +P   +Y  ++  L + ++ + A  +   M   G++P   + N LI   CK 
Sbjct: 275 GCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCK- 333

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A +I  +    G  PD +TY +LI+GLC  G+   A  LF E   K   P V+ 
Sbjct: 334 GGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI GL     + EA +L  EM  KG+ P V T++ L++GLCK GC S A  L+++MI
Sbjct: 394 YNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMI 453

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           SK + P+I T++ L++G   + K++ A+EILD M   G+ PD   Y  +++  C   K++
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFE 513

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           +       MV  G  PN  T+       N +++ LC+    + A  +   M+N+S++ D+
Sbjct: 514 DVMETYKTMVEKGCAPNLFTF-------NILLESLCRYRKLDEALGLLEEMKNKSVNPDA 566

Query: 408 LTYSSLITCFCKKGDIHKSARIVDEL----VLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           +T+ +LI  FCK GD+  +  +  ++     +    P   T++ ++ A  ++  +   AE
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTP---TYNIIIHAFTEKLNVTM-AE 622

Query: 464 LLLLELMNKCV 474
            L  E++++C+
Sbjct: 623 KLFQEMVDRCL 633



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 204/422 (48%), Gaps = 8/422 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ +I  L   ++F+ AE  L ++  E  +     + ++  GY +      A
Sbjct: 281 GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLA 340

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+       G  P   +Y +++  L  E +   A   +      GI+P V   N LIK 
Sbjct: 341 ERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L  N G +  A ++  EM  +G  P+  T+  L+NGLC++G + +A  L K M +K   P
Sbjct: 401 L-SNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFP 459

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            + T+  LI+G      +E A+ + + M   GV+P+V+TY+SL++GLCK       ME  
Sbjct: 460 DIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETY 519

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+ K   PN+ T++ LL  LC+  KL EA+ +L+ MK + + PDA  +G +I  FC  
Sbjct: 520 KTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSI 403
           G    A     +M            S     +N ++     K +   A +++  M +R +
Sbjct: 580 GDLDGAYTLFRKM------EEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCL 633

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D  TY  ++  FCK G+++   + + E++ +G +P   T   V+  L    ++ +AA 
Sbjct: 634 GPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAG 693

Query: 464 LL 465
           ++
Sbjct: 694 II 695



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 157/357 (43%), Gaps = 37/357 (10%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NGF  D  T+  +I  L    +   A  L +    +       ++ ++ +G       L+
Sbjct: 350 NGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILE 409

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++ ++M E G  P  +++  ++  L +   +  A    + M   G  P + + N+LI 
Sbjct: 410 AAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIH 469

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
                   M+ A +I   M + G  PD YTY +L+NGLC+  K  +  E +K M  K C+
Sbjct: 470 GYSTQL-KMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG-------- 275
           P + T+  L+  LC+ + ++EA+ L EEM++K V P+  T+ +L+DG CK G        
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL 588

Query: 276 ----------------------------CSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
                                         + A +L Q M+ +   P+  TY  +++G C
Sbjct: 589 FRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           K G +    + L  M   G  P     G++I+C C   +  EAA  +  MV  G+ P
Sbjct: 649 KTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 143/269 (53%), Gaps = 10/269 (3%)

Query: 86  DIFLS--ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           DIF    +  GY    +  +A+ + D M + G +P   +Y ++L  L + ++ +     Y
Sbjct: 460 DIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETY 519

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           + M E G  P + + N+L+++LC+    +D A  +  EM N+   PD+ T+GTLI+G C+
Sbjct: 520 KTMVEKGCAPNLFTFNILLESLCRYR-KLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCK 578

Query: 204 LGKIYEAKELFKEME-TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
            G +  A  LF++ME     S +  TY  +I+   +  +V  A +LF+EM  + + P+ +
Sbjct: 579 NGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY 638

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY  ++DG CK G  +   + L  M+     P++ T   ++N LC E ++ EA  I+ RM
Sbjct: 639 TYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRM 698

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             +GL P+A      ++  CD+ K + AA
Sbjct: 699 VQKGLVPEA------VNTICDVDKKEVAA 721



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 114/260 (43%), Gaps = 10/260 (3%)

Query: 209 EAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSS 266
           +A E+F  M  +     T+ TY S+I  L      E    +  +MR   G       Y  
Sbjct: 22  KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVG 81

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            M    + G   +A+ + + M      P + +Y+ +++ L   G   +A ++  RM+ +G
Sbjct: 82  AMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRG 141

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           + PD   +   +  FC   +   A   L+ M   G   N + +        TVV G  + 
Sbjct: 142 ITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYC-------TVVGGFYEE 194

Query: 387 D-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
           +     ++++  M    +S+   T++ L+   CKKGD+ +  +++D+++  G LP+  T+
Sbjct: 195 NFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTY 254

Query: 446 SAVMTALWDRRKMRQAAELL 465
           +  +  L  R ++  A  ++
Sbjct: 255 NLFIQGLCQRGELDGAVRMV 274


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 133/438 (30%), Positives = 232/438 (52%), Gaps = 12/438 (2%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL-DR 75
            V  +IR +KD  KAL +F+S   E  +GF+H  ST+  +I KL    +F   E++L D 
Sbjct: 9   HVTTVIRCQKDPMKALEMFNSMRKE--DGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDM 66

Query: 76  VNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
                  + E +++   + YGR  +  +A+ VF++M  + CEPT  SY  +++ILV+   
Sbjct: 67  RQNVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGY 126

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
              A + Y  MR+ GI P V S  + +K+ C+ S    AA ++   M ++GC  +   Y 
Sbjct: 127 FDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRP-HAALRLLNNMSSQGCEMNVVAYC 185

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           T++ G        E  ELF +M     S  + T+  L++ LC+   V+E  +L +++  +
Sbjct: 186 TVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKR 245

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           GV PN+FTY+  + GLC+ G    A+ ++  +I +  +P++VTY+ L+ GLCK  K QEA
Sbjct: 246 GVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEA 305

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
              L ++  +GL+PD+  Y  +I+ +C  G  Q A   L   V  G  P+  T+      
Sbjct: 306 EVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTY------ 359

Query: 376 HNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             +++ GLC + + NRA  ++     + I  + + Y++LI     +G I ++A++  E+ 
Sbjct: 360 -RSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMS 418

Query: 435 LDGCLPDEGTWSAVMTAL 452
             G +P+  T++ ++  L
Sbjct: 419 EKGLIPEVQTFNILVNGL 436



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 225/433 (51%), Gaps = 25/433 (5%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICRGYGRVHRPLDA-M 105
           STF+ ++  L      +  E LLD+V K        T + F+  +C+        LDA +
Sbjct: 217 STFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQ-----KGELDAAV 271

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+  ++ + G +P   +Y  ++  L + ++ + A  +   +   G++P   + N LI   
Sbjct: 272 RMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGY 331

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK  G +  A +I       G  PD +TY +LI+GLC  G+   A  LF E   K   P 
Sbjct: 332 CK-GGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPN 390

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           V+ Y +LI GL     + EA +L  EM  KG+ P V T++ L++GLCK GC S A  L++
Sbjct: 391 VILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVK 450

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           +MISK + P+I T++ L++G   + K++ A+EILD M   G+ PD   Y  +++  C   
Sbjct: 451 VMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTS 510

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
           KY++       MV  G  PN  T+       N +++ LC+    ++A  +   M+N+S++
Sbjct: 511 KYEDVMETYKTMVEKGCAPNLFTF-------NILLESLCRYHKLDKALGLLEEMKNKSVN 563

Query: 405 VDSLTYSSLITCFCKKGDIHKSA---RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            D++T+ +LI  FCK GD+  +    R ++E+ +  C     T++ ++ A  ++  +   
Sbjct: 564 PDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSC--STPTYNIIIHAFTEKLNVTM- 620

Query: 462 AELLLLELMNKCV 474
           AE L  E++++C+
Sbjct: 621 AEKLFQEMVDRCL 633



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 203/422 (48%), Gaps = 8/422 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ +I  L   ++F+ AE  L ++  E  +     + ++  GY +      A
Sbjct: 281 GPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLA 340

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+       G  P   +Y +++  L  E +   A   +      GI+P V   N LIK 
Sbjct: 341 ERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L  N G +  A ++  EM  +G  P+  T+  L+NGLC++G + +A  L K M +K   P
Sbjct: 401 L-SNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFP 459

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            + T+  LI+G      +E A+ + + M   GV+P+V+TY+SL++GLCK       ME  
Sbjct: 460 DIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETY 519

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+ K   PN+ T++ LL  LC+  KL +A+ +L+ MK + + PDA  +G +I  FC  
Sbjct: 520 KTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSI 403
           G    A     +M            S     +N ++     K +   A +++  M +R +
Sbjct: 580 GDLDGAYTLFRKM------EEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCL 633

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D  TY  ++  FCK G++    + + E++ +G +P   T   V+  L    ++ +AA 
Sbjct: 634 GPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAG 693

Query: 464 LL 465
           ++
Sbjct: 694 II 695



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 37/357 (10%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NGF  D  T+  +I  L    +   A  L +    +       ++ ++ +G       L+
Sbjct: 350 NGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILE 409

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++  +M E G  P  +++  ++  L +   +  A    + M   G  P + + N+LI 
Sbjct: 410 AAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIH 469

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
                   M+ A +I   M + G  PD YTY +L+NGLC+  K  +  E +K M  K C+
Sbjct: 470 GYSTQL-KMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCA 528

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG-------- 275
           P + T+  L+  LC+   +++A+ L EEM++K V P+  T+ +L+DG CK G        
Sbjct: 529 PNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL 588

Query: 276 -----------CSS-----------------QAMELLQMMISKRHRPNIVTYSTLLNGLC 307
                      CS+                  A +L Q M+ +   P+  TY  +++G C
Sbjct: 589 FRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           K G +    + L  M   G  P     G++I+C C   +  EAA  +  MV  G+ P
Sbjct: 649 KTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 4/249 (1%)

Query: 86  DIFLS--ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           DIF    +  GY    +  +A+ + D M + G +P   +Y ++L  L + ++ +     Y
Sbjct: 460 DIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETY 519

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           + M E G  P + + N+L+++LC+    +D A  +  EM N+   PD+ T+GTLI+G C+
Sbjct: 520 KTMVEKGCAPNLFTFNILLESLCRYH-KLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCK 578

Query: 204 LGKIYEAKELFKEME-TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
            G +  A  LF++ME     S +  TY  +I+   +  +V  A +LF+EM  + + P+ +
Sbjct: 579 NGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY 638

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY  ++DG CK G      + L  M+     P++ T   ++N LC E ++ EA  I+ RM
Sbjct: 639 TYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRM 698

Query: 323 KLQGLKPDA 331
             +GL P+A
Sbjct: 699 VQKGLVPEA 707



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 8/260 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G+  D  TF+++I    +  +   A ++LD +     D     + S+  G  +  +  
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYE 513

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           D M  +  M E GC P   ++  +L  L   ++L  A      M+   + P   +   LI
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLI 573

Query: 163 KALCKNSGTMDAAFKIFREMPN----RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
              CKN G +D A+ +FR+M         TP   TY  +I+       +  A++LF+EM 
Sbjct: 574 DGFCKN-GDLDGAYTLFRKMEEVYMVSCSTP---TYNIIIHAFTEKLNVTMAEKLFQEMV 629

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            +   P   TY  +++G C++ +V+   +   EM   G  P++ T   +++ LC      
Sbjct: 630 DRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVY 689

Query: 279 QAMELLQMMISKRHRPNIVT 298
           +A  ++  M+ K   P  V 
Sbjct: 690 EAAGIIHRMVQKGLVPEAVN 709


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/487 (29%), Positives = 247/487 (50%), Gaps = 44/487 (9%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT  Q+ +L+    DV   L IF+    +   G+ H    + + I+KL +  +F+  + L
Sbjct: 77  ITPVQLCKLLELPLDVPTLLEIFERVGGQ--KGYCHTFDVYYVFINKLGAIGKFKLIDKL 134

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILV 131
           L ++ +E     E IF+ I + YG+  +P  A+R+   M+  + CEPT KSY  VL ILV
Sbjct: 135 LMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILV 194

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
             N  ++A   +  M   G+ P V +  +++KALC  +  +D+A  + R+M   GC P+S
Sbjct: 195 TGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFN-EVDSACSLLRDMTKHGCVPNS 253

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
             Y TLI+ L +  ++ EA +L +EM    C P V T+  +I+GLC+   + +A +L + 
Sbjct: 254 IVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDR 313

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL--------------------------- 284
           M  +G  P+  TY  L+ GLC+ G  ++A ++L                           
Sbjct: 314 MLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEA 373

Query: 285 -----QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
                + MI+   +P+I TY+ L++GLCKEG L  A ++++ M  +G +P+   Y  +++
Sbjct: 374 QSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVN 433

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
             C  G  +EA   L EM   G+T N +       I+N ++  LC+ +  + A  +   M
Sbjct: 434 GLCKAGLLEEAGLVLHEMSARGLTINSV-------IYNCLICALCRKEKVHVALNLLSEM 486

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             +    D  TY+SLI   CK   I ++ R+   ++LDG + +  T++ ++ AL  R   
Sbjct: 487 CTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAF 546

Query: 459 RQAAELL 465
           ++A  L+
Sbjct: 547 QKALTLV 553



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/442 (28%), Positives = 216/442 (48%), Gaps = 21/442 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I    ++  +  +  V++AL + +     +  G   D  TF+ +I  L   N+   A  L
Sbjct: 254 IVYQTLIHALSQKNQVSEALKLLEEM---FVMGCMPDVQTFNDVIHGLCKVNKIHDATKL 310

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI--TVLAIL 130
           +DR+           +  +  G  R+ +  +A ++  K+      P P + I  T++   
Sbjct: 311 VDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI------PCPNNAILNTLINGY 364

Query: 131 VEENQLKLAFRFYRH-MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           V   QLK A  F    M   G QP + + N+L+  LCK  G++  A  +  EM  RGC P
Sbjct: 365 VMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCK-EGSLSFARDLVNEMSRRGCEP 423

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +  TY  L+NGLC+ G + EA  +  EM  +  +   V Y  LI  LC+ + V  A+ L 
Sbjct: 424 NVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLL 483

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            EM +KG +P++FTY+SL+ GLCK     +A  L   M+      N VTY+TL++ L + 
Sbjct: 484 SEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRR 543

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G  Q+A+ +++ M  +G   D   Y  +I  FC +G  ++     ++M++ G+  + ++ 
Sbjct: 544 GAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISC 603

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N ++ GLCK    + AF+      NR    D +TY+S++   CK G I ++  
Sbjct: 604 -------NIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALN 656

Query: 429 IVDELVLDGCLPDEGTWSAVMT 450
           + D L ++G  PD  T++  ++
Sbjct: 657 LFDRLQVEGVRPDAFTYNTFIS 678



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 200/410 (48%), Gaps = 14/410 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  DN T+  ++  L    +   A  +L ++    C     I  ++  GY    +  +A
Sbjct: 318 GFYPDNMTYGFLLHGLCRIGKLNEARKILIKI---PCP-NNAILNTLINGYVMSGQLKEA 373

Query: 105 MRVFDK-MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               ++ M  FG +P   +Y  ++  L +E  L  A      M   G +P V +  +L+ 
Sbjct: 374 QSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVN 433

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +G ++ A  +  EM  RG T +S  Y  LI  LCR  K++ A  L  EM TK C 
Sbjct: 434 GLCK-AGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCK 492

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P + TY SLI GLC+   ++EA RLF  M   G   N  TY++L+  L + G   +A+ L
Sbjct: 493 PDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTL 552

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M+ +    + +TY+ L+   CK G +++ +E+ ++M + GL  D      +I+  C 
Sbjct: 553 VNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCK 612

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           +GK   A  FL + +  G  P+ +T+       N+V+ GLCK      A  ++  ++   
Sbjct: 613 VGKVDNAFEFLRDAINRGFVPDIVTY-------NSVLNGLCKVGRIKEALNLFDRLQVEG 665

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +  D+ TY++ I+  CK+G ++ +       + +G +P   TW+ ++  L
Sbjct: 666 VRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTL 715



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 181/354 (51%), Gaps = 10/354 (2%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE 79
           QL  A+  +N+ ++ F         GF+ D  T+++++  L        A DL++ +++ 
Sbjct: 369 QLKEAQSFLNETMINF---------GFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRR 419

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
            C+     +  +  G  +     +A  V  +M   G       Y  ++  L  + ++ +A
Sbjct: 420 GCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVA 479

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
                 M   G +P + + N LI  LCK    +D AF++F  M   G   ++ TY TLI+
Sbjct: 480 LNLLSEMCTKGCKPDLFTYNSLIYGLCK-VDRIDEAFRLFHNMLLDGAVANNVTYNTLIH 538

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
            L R G   +A  L  +M  + C+   +TY  LI   C+  ++E+ + L+E+M   G+  
Sbjct: 539 ALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGA 598

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +  + + +++GLCK G    A E L+  I++   P+IVTY+++LNGLCK G+++EA+ + 
Sbjct: 599 DTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLF 658

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           DR++++G++PDA  Y   IS  C  G   +A +F    +  G  P+ LTW++ +
Sbjct: 659 DRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLV 712


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 222/417 (53%), Gaps = 13/417 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVFD 109
           T++ +I+          A  L +++ +  C  + D+F    +  GY +  RP D  ++  
Sbjct: 273 TYNTLINGFCKLGNMDEAVVLFNQMLENSC--SPDVFTYNILIDGYCKQERPQDGAKLLQ 330

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M ++GCEP   +Y T++  LV+  +   AF   + M     +P   + N++I   CK  
Sbjct: 331 EMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK-V 389

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +D A+++F+ M +RGC PD YTY  +I+G CR  +I +A++L + M    C P VVTY
Sbjct: 390 GQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTY 449

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            S+++GLC++  V+EA  ++E +R+ G   +V T S+L+DGLCK      A +LL+ M  
Sbjct: 450 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 509

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
               P++V Y+ L++G CK  +L +++     M  +G  P    Y  +I   C   + ++
Sbjct: 510 NGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRD 569

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
               L  M+  G+TP+ +       ++ +V+ GLCK+D  + A+++Y  M+    +   +
Sbjct: 570 GCMLLKTMLERGVTPDAI-------VYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVV 622

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TY+ L+   CK   + ++  +++ +  DGCLPD  T+++V    W   +  +A  L 
Sbjct: 623 TYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLF 679



 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 238/475 (50%), Gaps = 12/475 (2%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           +  + + ++   +  + V ++++   D++KA+  FD  T +   G++H   T + ++S  
Sbjct: 85  LASRRLCEFGGYLVPSVVGRVLQQLDDLDKAVKFFDWCTGQ--PGYKHSKFTCNCLLSAF 142

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           V   + + A DL        C      + ++  G+ +      A R+ D+M++ G  P  
Sbjct: 143 VRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHN 202

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
             Y T++  L +  ++  A   YR M+     P V +  +L+ ALCK++   DA+  I  
Sbjct: 203 AVYNTIIKGLCDNGRVDSALVHYRDMQR-NCAPSVITYTILVDALCKSARISDASL-ILE 260

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           +M   GC P+  TY TLING C+LG + EA  LF +M   +CSP V TY  LI+G C+ +
Sbjct: 261 DMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQE 320

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
             ++  +L +EM   G EPN  TY++LMD L K G    A  L QMM+ +  +P+  T++
Sbjct: 321 RPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFN 380

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            +++  CK G+L  A E+   M  +G  PD   Y  +IS  C   +  +A   L+ M   
Sbjct: 381 LMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEA 440

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           G  P+ +T+       N++V GLCK +  + A++VY  +RN    +D +T S+LI   CK
Sbjct: 441 GCPPDVVTY-------NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK 493

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
              +  + +++ E+  +G  PD   ++ ++       ++ ++       L   CV
Sbjct: 494 SRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCV 548



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 7/323 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKC--DI-TEDIFLSICRGYGRVHRPLDAMRVF 108
           TF+LMI       Q   A +L   +    C  DI T +I +S   G  R +R  DA ++ 
Sbjct: 378 TFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMIS---GACRANRIDDARQLL 434

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M E GC P   +Y ++++ L + +Q+  A+  Y  +R  G    V + + LI  LCK 
Sbjct: 435 ERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK- 493

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           S  +D A K+ REM   G  PD   Y  LI+G C+  ++ ++   F EM  K C PTV+T
Sbjct: 494 SRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVIT 553

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y+ +I+ LC+S  V +   L + M  +GV P+   Y+S++DGLCK     +A EL ++M 
Sbjct: 554 YSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMK 613

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                P +VTY+ L++ LCK  +L EA+ +L+ M+  G  PD   Y  +   F    ++ 
Sbjct: 614 QTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHD 673

Query: 349 EAANFLDEMVLGGITPNRLTWSL 371
           +A      M   G +P    +SL
Sbjct: 674 KAFRLFQAMKSRGCSPTPFMYSL 696



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 146/309 (47%), Gaps = 36/309 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DIT--EDIFLSICR------- 93
           G   D  T+++MIS    AN+   A  LL+R+ +  C  D+     I   +C+       
Sbjct: 406 GCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEA 465

Query: 94  ------------------------GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
                                   G  +  R  DA ++  +M+  G  P   +Y  ++  
Sbjct: 466 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHG 525

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
             + +QL  +  F+  M + G  P V + +++I  LCK++   D    + + M  RG TP
Sbjct: 526 FCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM-LLKTMLERGVTP 584

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+  Y ++I+GLC+     EA EL+K M+   C+PTVVTY  L++ LC+   ++EA+ L 
Sbjct: 585 DAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLL 644

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           E M S G  P+  TY+S+ DG  K     +A  L Q M S+   P    YS LL  L  E
Sbjct: 645 EVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAE 704

Query: 310 GKLQEAVEI 318
            K+ +A+EI
Sbjct: 705 EKMDQAMEI 713


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 246/467 (52%), Gaps = 23/467 (4%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           K S  IT    + LI+ EKD   AL IF+  + +   GF H+N+T++ ++ KL    +F+
Sbjct: 126 KKSKYITHDVAINLIKREKDPQHALKIFNMVSEQ--KGFNHNNATYATILQKLAQFKKFQ 183

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGR--VHRPLDAMRVFDKMKEFGC----EPTPK 121
             + +L ++  E C   E +F+++ + Y +   H      +VFD           +P+PK
Sbjct: 184 AVDRVLHQMTYEACKFHEGVFINLMKHYSKCGFHE-----KVFDAFLSIQTIVREKPSPK 238

Query: 122 SYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           +  + L +LV+ NQ+ L  +   +  R +  +P V   N+L+K  C+  G +D+AF++ +
Sbjct: 239 AISSCLNLLVDSNQVDLVRKLLLYAKRSLVYKPNVCIFNILVKYHCRR-GDIDSAFEVVK 297

Query: 181 EMPN-RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQ 238
           EM N +   P+  TY TL++GLCR G++ EA ELF+EM +K    P  +TY  LING C+
Sbjct: 298 EMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCR 357

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
               + A  + E M++ G  PNVF YS+L+DGLCK G    A  +L  M S   +P+ +T
Sbjct: 358 EGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAIT 417

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y++L+N   + G++ EA+E+L  MK    + D   +  I+   C  G++ EA + ++++ 
Sbjct: 418 YTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLP 477

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
             G+  N+ ++ +   + N++ Q       N+   + LS   R       T + L+   C
Sbjct: 478 QQGVYLNKGSYRI---VLNSLTQNCELRKANKLLGLMLS---RGFVPHYATSNELLVRLC 531

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           K+G  + +A  + +LV  G  P   +W  ++  +   RK+    ELL
Sbjct: 532 KEGMANDAATALFDLVDMGFQPQHDSWELLIDLICRDRKLLYVFELL 578



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 137/317 (43%), Gaps = 17/317 (5%)

Query: 165 LCKNSGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           L K       A KIF  +   +G   ++ TY T++  L +  K      +  +M  +AC 
Sbjct: 139 LIKREKDPQHALKIFNMVSEQKGFNHNNATYATILQKLAQFKKFQAVDRVLHQMTYEACK 198

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE-PNVFTYSSLMDGLCKGGCSSQAME 282
                + +L+    +    E+    F  +++   E P+    SS ++ L          +
Sbjct: 199 FHEGVFINLMKHYSKCGFHEKVFDAFLSIQTIVREKPSPKAISSCLNLLVDSNQVDLVRK 258

Query: 283 LLQMMISKR---HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK-PDAGLYGKII 338
           LL  + +KR   ++PN+  ++ L+   C+ G +  A E++  M+      P+   Y  ++
Sbjct: 259 LL--LYAKRSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLM 316

Query: 339 SCFCDIGKYQEAANFLDEMVLGG-ITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
              C  G+ +EA    +EMV    I P+ LT+       N ++ G C+    +RA  V  
Sbjct: 317 DGLCRNGRLKEAFELFEEMVSKDQIVPDPLTY-------NVLINGFCREGKADRARNVIE 369

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+N     +   YS+L+   CK G +  +  ++ E+   G  PD  T+++++       
Sbjct: 370 FMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNG 429

Query: 457 KMRQAAELLLLELMNKC 473
           ++ +A ELL     N C
Sbjct: 430 QIDEAIELLTEMKENDC 446



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 105/241 (43%), Gaps = 1/241 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++++I+      +   A ++++ +    C      + ++  G  +  +  DA  V 
Sbjct: 344 DPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVL 403

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +MK  G +P   +Y +++       Q+  A      M+E   Q    + NV++  LC+ 
Sbjct: 404 AEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCR- 462

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G  D A  +  ++P +G   +  +Y  ++N L +  ++ +A +L   M ++   P   T
Sbjct: 463 EGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYAT 522

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
              L+  LC+     +A     ++   G +P   ++  L+D +C+        ELL  ++
Sbjct: 523 SNELLVRLCKEGMANDAATALFDLVDMGFQPQHDSWELLIDLICRDRKLLYVFELLDELV 582

Query: 289 S 289
           +
Sbjct: 583 T 583



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 1/177 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G + D  T++ +I+      Q   A +LL  + +  C      F  I  G  R  R  
Sbjct: 408 SSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFD 467

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ + +K+ + G      SY  VL  L +  +L+ A +    M   G  P  A+ N L+
Sbjct: 468 EALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYATSNELL 527

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
             LCK     DAA  +F ++ + G  P   ++  LI+ +CR  K+    EL  E+ T
Sbjct: 528 VRLCKEGMANDAATALF-DLVDMGFQPQHDSWELLIDLICRDRKLLYVFELLDELVT 583


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 208/366 (56%), Gaps = 10/366 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVL 161
           +A+ V   M+  GC P   +Y T++A      +L  A R    MRE G  +P + + N +
Sbjct: 170 EAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSM 229

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LCK +G M+ A K+F EM   G  PD  +Y TL++G C++G ++E+  +F EM  + 
Sbjct: 230 VNGLCK-AGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 288

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVT+TSLI+  C++ ++E+A+ L  +MR +G+  N  T+++L+DG CK G    A+
Sbjct: 289 LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDAL 348

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
             ++ M     +P++V Y+ L+NG CK G++  A E++  M+ + +KPD   Y  IIS +
Sbjct: 349 LAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 408

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C +G    A     +M+  G+ P+ +T+S       ++++GLC+    N A +++ +M  
Sbjct: 409 CKVGNLDSAFQLNQKMLKKGVLPDAITYS-------SLIRGLCEEKRLNDACELFENMLQ 461

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +  D  TY++LI   CK+G++ K+  + DE++  G LPD  T+S ++  L    + ++
Sbjct: 462 LGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKE 521

Query: 461 AAELLL 466
           A  LL 
Sbjct: 522 AHRLLF 527



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 209/412 (50%), Gaps = 10/412 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ M++ L  A +   A  + D + +E        + ++  GY +V    +++ VF +M
Sbjct: 225 TFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 284

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G  P   ++ +++    +   L+ A      MRE G++    +   LI   CK  G 
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKK-GF 343

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A     EM   G  P    Y  LING C+LG++  A+EL +EME K   P VVTY++
Sbjct: 344 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+  +++ A +L ++M  KGV P+  TYSSL+ GLC+    + A EL + M+   
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 463

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+  TY+TL++G CKEG +++A+ + D M  +G+ PD   Y  +I+      + +EA 
Sbjct: 464 VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAH 523

Query: 352 NFLDEMVLGGITPNRLTWS--------LHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
             L ++      P+ + +            +    +++G C K     A +VY SM +R+
Sbjct: 524 RLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRN 583

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
             +D   YS LI   C+ G++ K+     +++  G  P+  +  +++  L++
Sbjct: 584 WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFE 635



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 180/353 (50%), Gaps = 46/353 (13%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P V + N ++ AL  +  ++ +A +    M   G  P+ YTY  L+  LC  G++ E
Sbjct: 113 GYAPSVPAYNAVLLAL--SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEE 170

Query: 210 AKELFKEMETKACSPTVVTY------------------------------------TSLI 233
           A  +  +M    C+P  VTY                                     S++
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           NGLC++  +E A ++F+EM  +G+ P+V +Y++L+ G CK GC  +++ +   M  +   
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P++VT+++L++  CK G L++AV ++ +M+ +GL+ +   +  +I  FC  G   +A   
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
           ++EM   GI P+ + +       N ++ G CK    + A ++   M  + +  D +TYS+
Sbjct: 351 VEEMRKCGIQPSVVCY-------NALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I+ +CK G++  + ++  +++  G LPD  T+S+++  L + +++  A EL 
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELF 456


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/487 (29%), Positives = 247/487 (50%), Gaps = 44/487 (9%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT  Q+ +L+    DV   L IF+    +   G+ H    + + I+KL +  +F+  + L
Sbjct: 77  ITPVQLCKLLELPLDVPTLLEIFERVGGQ--KGYCHTFDVYYVFINKLGAIGKFKLIDKL 134

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILV 131
           L ++ +E     E IF+ I + YG+  +P  A+R+   M+  + CEPT KSY  VL ILV
Sbjct: 135 LMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILV 194

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
             N  ++A   +  M   G+ P V +  +++KALC  +  +D+A  + R+M   GC P+S
Sbjct: 195 TGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFN-EVDSACSLLRDMTKHGCVPNS 253

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
             Y TLI+ L +  ++ EA +L +EM    C P V T+  +I+GLC+   + +A +L + 
Sbjct: 254 IVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDR 313

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL--------------------------- 284
           M  +G  P+  TY  L+ GLC+ G  ++A ++L                           
Sbjct: 314 MLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEA 373

Query: 285 -----QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
                + MI+   +P+I TY+ L++GLCKEG L  A ++++ M  +G +P+   Y  +++
Sbjct: 374 QSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVN 433

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
             C  G  +EA   L EM   G+T N +       I+N ++  LC+ +  + A  +   M
Sbjct: 434 GLCKAGLLEEAGLVLHEMSARGLTINSV-------IYNCLICALCRKEKVHVALNLLSEM 486

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             +    D  TY+SLI   CK   I ++ R+   ++LDG + +  T++ ++ AL  R   
Sbjct: 487 CTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAF 546

Query: 459 RQAAELL 465
           ++A  L+
Sbjct: 547 QKALTLV 553



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/442 (28%), Positives = 216/442 (48%), Gaps = 21/442 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I    ++  +  +  V++AL + +     +  G   D  TF+ +I  L   N+   A  L
Sbjct: 254 IVYQTLIHALSQKNQVSEALKLLEEM---FVMGCMPDVQTFNDVIHGLCKVNKIHDATKL 310

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI--TVLAIL 130
           +DR+           +  +  G  R+ +  +A ++  K+      P P + I  T++   
Sbjct: 311 VDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI------PCPNNAILNTLINGY 364

Query: 131 VEENQLKLAFRFYRH-MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           V   QLK A  F    M   G QP + + N+L+  LCK  G++  A  +  EM  RGC P
Sbjct: 365 VMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCK-EGSLSFARDLVNEMSRRGCEP 423

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +  TY  L+NGLC+ G + EA  +  EM  +  +   V Y  LI  LC+ + V  A+ L 
Sbjct: 424 NVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLL 483

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            EM +KG +P++FTY+SL+ GLCK     +A  L   M+      N VTY+TL++ L + 
Sbjct: 484 SEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRR 543

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G  Q+A+ +++ M  +G   D   Y  +I  FC +G  ++     ++M++ G+  + ++ 
Sbjct: 544 GAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISC 603

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N ++ GLCK    + AF+      NR    D +TY+S++   CK G I ++  
Sbjct: 604 -------NIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALN 656

Query: 429 IVDELVLDGCLPDEGTWSAVMT 450
           + D L ++G  PD  T++  ++
Sbjct: 657 LFDRLQVEGVRPDAFTYNTFIS 678



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 200/410 (48%), Gaps = 14/410 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  DN T+  ++  L    +   A  +L ++    C     I  ++  GY    +  +A
Sbjct: 318 GFYPDNMTYGFLLHGLCRIGKLNEARKILIKI---PCP-NNAILNTLINGYVMSGQLKEA 373

Query: 105 MRVFDK-MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               ++ M  FG +P   +Y  ++  L +E  L  A      M   G +P V +  +L+ 
Sbjct: 374 QSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVN 433

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +G ++ A  +  EM  RG T +S  Y  LI  LCR  K++ A  L  EM TK C 
Sbjct: 434 GLCK-AGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCK 492

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P + TY SLI GLC+   ++EA RLF  M   G   N  TY++L+  L + G   +A+ L
Sbjct: 493 PDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTL 552

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M+ +    + +TY+ L+   CK G +++ +E+ ++M + GL  D      +I+  C 
Sbjct: 553 VNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCK 612

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           +GK   A  FL + +  G  P+ +T+       N+V+ GLCK      A  ++  ++   
Sbjct: 613 VGKVDNAFEFLRDAINRGFVPDIVTY-------NSVLNGLCKVGRIKEALNLFDRLQVEG 665

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +  D+ TY++ I+  CK+G ++ +       + +G +P   TW+ ++  L
Sbjct: 666 VRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTL 715



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 180/354 (50%), Gaps = 10/354 (2%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE 79
           QL  A+  +N+ ++ F         GF+ D  T+++++  L        A DL++ +++ 
Sbjct: 369 QLKEAQSFLNETMINF---------GFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRR 419

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
            C+     +  +  G  +     +A  V  +M   G       Y  ++  L  + ++ +A
Sbjct: 420 GCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVA 479

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
                 M   G +P + + N LI  LCK    +D AF++F  M   G   ++ TY TLI+
Sbjct: 480 LNLLSEMCTKGCKPDLFTYNSLIYGLCK-VDRIDEAFRLFHNMLLDGAVANNVTYNTLIH 538

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
            L R G   +A  L  +M  + C+   +TY  LI   C+  ++E+ + L+E+M   G+  
Sbjct: 539 ALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGA 598

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +  + + +++GLCK G    A E L+  I++   P+IVTY+++LNGLCK G+++EA+ + 
Sbjct: 599 DTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLF 658

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           DR++++G++PDA  Y   IS  C  G   +A  F    +  G  P+ LTW++ +
Sbjct: 659 DRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLV 712


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 208/366 (56%), Gaps = 10/366 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVL 161
           +A+ V   M+  GC P   +Y T++A      +L  A R    MRE G  +P + + N +
Sbjct: 28  EAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSM 87

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LCK +G M+ A K+F EM   G  PD  +Y TL++G C++G ++E+  +F EM  + 
Sbjct: 88  VNGLCK-AGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 146

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVT+TSLI+  C++ ++E+A+ L  +MR +G+  N  T+++L+DG CK G    A+
Sbjct: 147 LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDAL 206

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
             ++ M     +P++V Y+ L+NG CK G++  A E++  M+ + +KPD   Y  IIS +
Sbjct: 207 LAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 266

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C +G    A     +M+  G+ P+ +T+S       ++++GLC+    N A +++ +M  
Sbjct: 267 CKVGNLDSAFQLNQKMLKKGVLPDAITYS-------SLIRGLCEEKRLNDACELFENMLQ 319

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +  D  TY++LI   CK+G++ K+  + DE++  G LPD  T+S ++  L    + ++
Sbjct: 320 LGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKE 379

Query: 461 AAELLL 466
           A  LL 
Sbjct: 380 AHRLLF 385



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 185/318 (58%), Gaps = 10/318 (3%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G+ P V + N+L++ALC   G ++ A  +  +M   GC P++ TY TL+   CR G++  
Sbjct: 5   GVAPNVYTYNILVRALCAR-GRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDG 63

Query: 210 AKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           A+ +   M E     P +VT+ S++NGLC++  +E A ++F+EM  +G+ P+V +Y++L+
Sbjct: 64  AERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 123

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
            G CK GC  +++ +   M  +   P++VT+++L++  CK G L++AV ++ +M+ +GL+
Sbjct: 124 SGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLR 183

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
            +   +  +I  FC  G   +A   ++EM   GI P+ + +       N ++ G CK   
Sbjct: 184 MNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCY-------NALINGYCKLGR 236

Query: 389 -NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            + A ++   M  + +  D +TYS++I+ +CK G++  + ++  +++  G LPD  T+S+
Sbjct: 237 MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 296

Query: 448 VMTALWDRRKMRQAAELL 465
           ++  L + +++  A EL 
Sbjct: 297 LIRGLCEEKRLNDACELF 314



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 212/419 (50%), Gaps = 10/419 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ M++ L  A +   A  + D + +E        + ++  GY +V    +++ VF +M
Sbjct: 83  TFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 142

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G  P   ++ +++    +   L+ A      MRE G++    +   LI   CK  G 
Sbjct: 143 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKK-GF 201

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A     EM   G  P    Y  LING C+LG++  A+EL +EME K   P VVTY++
Sbjct: 202 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 261

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+  +++ A +L ++M  KGV P+  TYSSL+ GLC+    + A EL + M+   
Sbjct: 262 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 321

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+  TY+TL++G CKEG +++A+ + D M  +G+ PD   Y  +I+      + +EA 
Sbjct: 322 VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAH 381

Query: 352 NFLDEMVLGGITPNRLTWS--------LHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
             L ++      P+ + +            +    +++G C K     A +VY SM +R+
Sbjct: 382 RLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRN 441

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             +D   YS LI   C+ G++ K+     +++  G  P+  +  +++  L++   + +A
Sbjct: 442 WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 500



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 207/432 (47%), Gaps = 27/432 (6%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           ++++L +F   T     G   D  TF+ +I     A     A  L+ ++ +    + E  
Sbjct: 132 LHESLAVFSEMTQR---GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 188

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F ++  G+ +     DA+   ++M++ G +P+   Y  ++    +  ++ LA    R M 
Sbjct: 189 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 248

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              ++P V + + +I   CK  G +D+AF++ ++M  +G  PD+ TY +LI GLC   ++
Sbjct: 249 AKRVKPDVVTYSTIISGYCK-VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 307

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A ELF+ M      P   TYT+LI+G C+  +VE+A+ L +EM  KGV P+V TYS L
Sbjct: 308 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVL 367

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS---------------TLLNGLCKEGKL 312
           ++GL K   + +A  LL  +  +   P+ + Y                 LL G C +G +
Sbjct: 368 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLM 427

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL-TWSL 371
           +EA ++   M  +  K D  +Y  +I   C  G  ++A +F  +M+  G +PN   T SL
Sbjct: 428 KEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISL 487

Query: 372 HIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
              +     +G+   + + A Q  L+        D+    +LI    K+G++     ++ 
Sbjct: 488 ---VRGLFEEGMV-VEADNAIQDLLTC---CPLADAEASKALIDLNRKEGNVDALIDVLC 540

Query: 432 ELVLDGCLPDEG 443
            +  DG LP  G
Sbjct: 541 GMARDGLLPSSG 552


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/426 (31%), Positives = 228/426 (53%), Gaps = 20/426 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMR 106
           D  T++ ++       +   A+   D +  +  ++  ++FL   +  G  +  R +DA+R
Sbjct: 8   DVYTYAALLRGFCRGGEIDQAQRCFDEMRSK--NLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
            F  M+  G       Y  +L+ L +E +L  A      MR+ G +P V + N LI  LC
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK------ 220
           KN+   D A ++F  M +  C+P   TY TL++GL R GK+  A  LF+EM  +      
Sbjct: 126 KNNEP-DRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184

Query: 221 -ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
             CSP V+TY+ LI+GLC++  V +A+ L E M+++G  P+V TY+ L+DGLCK    + 
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 244

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A E+L+ M+     PN+VTY++LL+GLC+  ++ +A+ ++  M  +G  P+   YG +I 
Sbjct: 245 AWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID 304

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
             C +G+ ++A   L +M+  G TP+       + I+N ++ GLCK D  + +  +    
Sbjct: 305 GLCKVGRVKDACAMLADMIDKGGTPD-------LMIYNMLINGLCKADQVDESIALLRRA 357

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
            +  I  D +TYSS+I   C+   + ++ R++  +   GC PD   +S ++  L    K+
Sbjct: 358 VSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKV 417

Query: 459 RQAAEL 464
            +A +L
Sbjct: 418 DEAFDL 423



 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 219/434 (50%), Gaps = 16/434 (3%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99
           A   +G   D   ++ ++S L    +   A  +L  +    C+     + S+  G  + +
Sbjct: 69  AMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNN 128

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR-------HMREIGIQ 152
            P  A  +F+ MK   C P+  +Y T+L  L    +L+ A   ++       H  +    
Sbjct: 129 EPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCS 188

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V + +VLI  LCK +  +  A ++   M  RGC+PD  TY  L++GLC+  K+  A E
Sbjct: 189 PNVITYSVLIDGLCK-ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWE 247

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           + +EM    C P +VTY SL++GLC+++ V +A+ L  +M  +G  PNV TY +L+DGLC
Sbjct: 248 VLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLC 307

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G    A  +L  MI K   P+++ Y+ L+NGLCK  ++ E++ +L R    G+KPD  
Sbjct: 308 KVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVV 367

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            Y  +I   C   +  EA   L  +   G  P+ + +S       T++ GLCK    + A
Sbjct: 368 TYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYS-------TLIDGLCKAGKVDEA 420

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           F +Y  M       D +TYS+LI   CK G + ++  ++  +V  G  P   T+++++  
Sbjct: 421 FDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG 480

Query: 452 LWDRRKMRQAAELL 465
           L D   + +A EL+
Sbjct: 481 LCDLNHLDEAIELV 494



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 218/426 (51%), Gaps = 14/426 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S++I  L  AN+   A +LL+ +    C      +  +  G  +  +   A  V  +M
Sbjct: 193 TYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREM 252

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + GC P   +Y ++L  L    ++  A    R M   G  P V +   LI  LCK  G 
Sbjct: 253 LDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK-VGR 311

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A  +  +M ++G TPD   Y  LINGLC+  ++ E+  L +   +    P VVTY+S
Sbjct: 312 VKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSS 371

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I GLC+S  ++EA RL   ++S+G  P+V  YS+L+DGLCK G   +A +L ++M    
Sbjct: 372 VIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDG 431

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              ++VTYSTL++GLCK G++ EA  +L RM   G  P    Y  +I   CD+    EA 
Sbjct: 432 CDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAI 491

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSM-RNRSI-----SV 405
             ++EM      P+ +T+       N ++ G+C+ +   +  V L   + R +     ++
Sbjct: 492 ELVEEMERSNCAPSAVTY-------NILIHGMCRMERVDSAVVLLEQAKARCVAAGGTAL 544

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D++ YSSLI   CK G + ++     E++ +G +PD  T+S ++  L   + + +   L+
Sbjct: 545 DTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLV 604

Query: 466 LLELMN 471
           L +++ 
Sbjct: 605 LDQMVQ 610



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 197/393 (50%), Gaps = 49/393 (12%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA- 174
           C+P   +Y  +L       ++  A R +  MR   + P V   ++LI  LCK   ++DA 
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 175 ---------------------------------AFKIFREMPNRGCTPDSYTYGTLINGL 201
                                            A  I  EM + GC P+  TY +LI+GL
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM---RSKGVE 258
           C+  +   A+ELF+ M++  CSP++VTY +L++GL ++  +E AM LF+EM   RS  ++
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184

Query: 259 ----PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
               PNV TYS L+DGLCK    SQA+ELL+ M ++   P+++TY+ L++GLCKE K+  
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 244

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A E+L  M   G  P+   Y  ++   C   +  +A   + +M   G TPN +T+     
Sbjct: 245 AWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY----- 299

Query: 375 IHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              T++ GLCK    + A  +   M ++  + D + Y+ LI   CK   + +S  ++   
Sbjct: 300 --GTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRA 357

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           V  G  PD  T+S+V+  L    ++ +A  LLL
Sbjct: 358 VSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL 390



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 207/414 (50%), Gaps = 18/414 (4%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V++A+ + +S  A    G   D  T+++++  L   ++   A ++L  +    C      
Sbjct: 207 VSQAVELLESMKAR---GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT 263

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+  G  R  R  DA+ +   M   GC P   +Y T++  L +  ++K A      M 
Sbjct: 264 YNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMI 323

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + G  P +   N+LI  LCK +  +D +  + R   + G  PD  TY ++I GLCR  ++
Sbjct: 324 DKGGTPDLMIYNMLINGLCK-ADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRL 382

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  L   ++++ C P V+ Y++LI+GLC++  V+EA  L+E M   G + +V TYS+L
Sbjct: 383 DEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTL 442

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGLCK G   +A  LL  M+     P+ +TY++L+ GLC    L EA+E+++ M+    
Sbjct: 443 IDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNC 502

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDE-----MVLGGITPNRLTWSLHIRIHNTVVQG 382
            P A  Y  +I   C + +   A   L++     +  GG   + + +S       +++ G
Sbjct: 503 APSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYS-------SLIDG 555

Query: 383 LCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV-DELV 434
           LCK      A   +  M +  +  D +TYS L+    K  D+H+   +V D++V
Sbjct: 556 LCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMV 609



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 147/290 (50%), Gaps = 7/290 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D   ++++I+ L  A+Q   +  LL R            + S+  G  R +R  +A
Sbjct: 326 GGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEA 385

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+   +K  GC P    Y T++  L +  ++  AF  Y  M   G    V + + LI  
Sbjct: 386 CRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDG 445

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +G +D A  +   M   G  P + TY +LI GLC L  + EA EL +EME   C+P
Sbjct: 446 LCK-AGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAP 504

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-----GVEPNVFTYSSLMDGLCKGGCSSQ 279
           + VTY  LI+G+C+ + V+ A+ L E+ +++     G   +   YSSL+DGLCK G  ++
Sbjct: 505 SAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAE 564

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE-ILDRMKLQGLK 328
           A++  Q MI     P+ +TYS LL GL K   L E    +LD+M   G +
Sbjct: 565 ALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGYR 614


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 233/467 (49%), Gaps = 34/467 (7%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV--NKEKCDITEDI 87
           K L  F      +  G+  D  TFS +++      +   A  L+DR+   K++ D+    
Sbjct: 120 KLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVT-- 177

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
             ++  G     R  +A+ + D+M E+G +P   +Y  VL  L +     LA   +R M 
Sbjct: 178 VSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME 237

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E  I+  V   +++I +LCK+ G+ D A  +F EM  +G   D  TY +LI GLC  GK 
Sbjct: 238 ERNIKASVVQYSIVIDSLCKD-GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKW 296

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +  ++ +EM  +   P VVT+++LI+   +   + EA  L+ EM ++G+ P+  TY+SL
Sbjct: 297 DDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 356

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG CK  C  +A ++  +M+SK   P+IVTYS L+N  CK  ++ + + +   +  +GL
Sbjct: 357 IDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 416

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW------------------ 369
            P+   Y  ++  FC  GK   A     EMV  G+ P+ +T+                  
Sbjct: 417 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 476

Query: 370 ----------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
                     +L I I+N ++ G+C     + A+ ++ S+ ++ +  D +TY+ +I   C
Sbjct: 477 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 536

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           KKG + ++  +  ++  DGC PD+ T++ ++ A      +  + EL+
Sbjct: 537 KKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELI 583



 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 227/439 (51%), Gaps = 12/439 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V++ALV+ D    EY  GF+ D  T+  ++++L  +     A DL  ++ +     +   
Sbjct: 191 VSEALVLIDR-MVEY--GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  +     +     DA+ +F++M+  G +    +Y +++  L  + +     +  R M 
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              I P V + + LI    K    ++A  +++ EM  RG  PD+ TY +LI+G C+   +
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAK-ELYNEMITRGIAPDTITYNSLIDGFCKENCL 366

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           +EA ++F  M +K C P +VTY+ LIN  C++K V++ MRLF E+ SKG+ PN  TY++L
Sbjct: 367 HEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTL 426

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G C+ G  + A EL Q M+S+   P++VTY  LL+GLC  G+L +A+EI ++M+   +
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 486

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
               G+Y  II   C+  K  +A +    +   G+ P+ +T+       N ++ GLCK  
Sbjct: 487 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY-------NVMIGGLCKKG 539

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A  ++  M+    + D  TY+ LI        +  S  +++E+ + G   D  T  
Sbjct: 540 SLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIK 599

Query: 447 AVMTALWDRRKMRQAAELL 465
            V+  L DRR  +   ++L
Sbjct: 600 MVIDMLSDRRLDKSFLDML 618



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 192/363 (52%), Gaps = 7/363 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F+ M +    PTP  +  + + +    Q  L   F + M   GI+  + ++ ++I
Sbjct: 53  DAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMI 112

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  AF +       G  PD+ T+ TL+NG C  G++ EA  L   M     
Sbjct: 113 NCYCRKKKLL-FAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ 171

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VT ++LINGLC    V EA+ L + M   G +P+  TY  +++ LCK G S+ A++
Sbjct: 172 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M  +  + ++V YS +++ LCK+G   +A+ + + M+++G+K D   Y  +I   C
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           + GK+ + A  L EM+   I P+ +T+S  I +   V +G        A ++Y  M  R 
Sbjct: 292 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF--VKEGKLL----EAKELYNEMITRG 345

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I+ D++TY+SLI  FCK+  +H++ ++ D +V  GC PD  T+S ++ +    +++    
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405

Query: 463 ELL 465
            L 
Sbjct: 406 RLF 408



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 193/372 (51%), Gaps = 9/372 (2%)

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           Y R  + L A  V  +  + G EP   ++ T++     E ++  A      M E+  +P 
Sbjct: 115 YCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPD 174

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + +++ LI  LC   G +  A  +   M   G  PD  TYG ++N LC+ G    A +LF
Sbjct: 175 LVTVSTLINGLCLK-GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           ++ME +    +VV Y+ +I+ LC+  S ++A+ LF EM  KG++ +V TYSSL+ GLC  
Sbjct: 234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND 293

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G      ++L+ MI +   P++VT+S L++   KEGKL EA E+ + M  +G+ PD   Y
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQ 393
             +I  FC      EA    D MV  G  P+ +T+S+       ++   CK    +   +
Sbjct: 354 NSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI-------LINSYCKAKRVDDGMR 406

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++  + ++ +  +++TY++L+  FC+ G ++ +  +  E+V  G  P   T+  ++  L 
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466

Query: 454 DRRKMRQAAELL 465
           D  ++ +A E+ 
Sbjct: 467 DNGELNKALEIF 478


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 233/467 (49%), Gaps = 34/467 (7%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV--NKEKCDITEDI 87
           K L  F      +  G+  D  TFS +++      +   A  L+DR+   K++ D+    
Sbjct: 149 KLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVT-- 206

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
             ++  G     R  +A+ + D+M E+G +P   +Y  VL  L +     LA   +R M 
Sbjct: 207 VSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME 266

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E  I+  V   +++I +LCK+ G+ D A  +F EM  +G   D  TY +LI GLC  GK 
Sbjct: 267 ERNIKASVVQYSIVIDSLCKD-GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKW 325

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +  ++ +EM  +   P VVT+++LI+   +   + EA  L+ EM ++G+ P+  TY+SL
Sbjct: 326 DDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 385

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG CK  C  +A ++  +M+SK   P+IVTYS L+N  CK  ++ + + +   +  +GL
Sbjct: 386 IDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 445

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW------------------ 369
            P+   Y  ++  FC  GK   A     EMV  G+ P+ +T+                  
Sbjct: 446 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 505

Query: 370 ----------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
                     +L I I+N ++ G+C     + A+ ++ S+ ++ +  D +TY+ +I   C
Sbjct: 506 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 565

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           KKG + ++  +  ++  DGC PD+ T++ ++ A      +  + EL+
Sbjct: 566 KKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELI 612



 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 227/439 (51%), Gaps = 12/439 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V++ALV+ D    EY  GF+ D  T+  ++++L  +     A DL  ++ +     +   
Sbjct: 220 VSEALVLIDR-MVEY--GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 276

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  +     +     DA+ +F++M+  G +    +Y +++  L  + +     +  R M 
Sbjct: 277 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 336

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              I P V + + LI    K    ++A  +++ EM  RG  PD+ TY +LI+G C+   +
Sbjct: 337 GRNIIPDVVTFSALIDVFVKEGKLLEAK-ELYNEMITRGIAPDTITYNSLIDGFCKENCL 395

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           +EA ++F  M +K C P +VTY+ LIN  C++K V++ MRLF E+ SKG+ PN  TY++L
Sbjct: 396 HEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTL 455

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G C+ G  + A EL Q M+S+   P++VTY  LL+GLC  G+L +A+EI ++M+   +
Sbjct: 456 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 515

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
               G+Y  II   C+  K  +A +    +   G+ P+ +T+       N ++ GLCK  
Sbjct: 516 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY-------NVMIGGLCKKG 568

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A  ++  M+    + D  TY+ LI        +  S  +++E+ + G   D  T  
Sbjct: 569 SLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIK 628

Query: 447 AVMTALWDRRKMRQAAELL 465
            V+  L DRR  +   ++L
Sbjct: 629 MVIDMLSDRRLDKSFLDML 647



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 192/363 (52%), Gaps = 7/363 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F+ M +    PTP  +  + + +    Q  L   F + M   GI+  + ++ ++I
Sbjct: 82  DAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMI 141

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  AF +       G  PD+ T+ TL+NG C  G++ EA  L   M     
Sbjct: 142 NCYCRKKKLL-FAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ 200

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VT ++LINGLC    V EA+ L + M   G +P+  TY  +++ LCK G S+ A++
Sbjct: 201 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 260

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M  +  + ++V YS +++ LCK+G   +A+ + + M+++G+K D   Y  +I   C
Sbjct: 261 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 320

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           + GK+ + A  L EM+   I P+ +T+S  I +   V +G        A ++Y  M  R 
Sbjct: 321 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF--VKEGKLL----EAKELYNEMITRG 374

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I+ D++TY+SLI  FCK+  +H++ ++ D +V  GC PD  T+S ++ +    +++    
Sbjct: 375 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 434

Query: 463 ELL 465
            L 
Sbjct: 435 RLF 437



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 193/372 (51%), Gaps = 9/372 (2%)

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           Y R  + L A  V  +  + G EP   ++ T++     E ++  A      M E+  +P 
Sbjct: 144 YCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPD 203

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + +++ LI  LC   G +  A  +   M   G  PD  TYG ++N LC+ G    A +LF
Sbjct: 204 LVTVSTLINGLCL-KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 262

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           ++ME +    +VV Y+ +I+ LC+  S ++A+ LF EM  KG++ +V TYSSL+ GLC  
Sbjct: 263 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND 322

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G      ++L+ MI +   P++VT+S L++   KEGKL EA E+ + M  +G+ PD   Y
Sbjct: 323 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 382

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQ 393
             +I  FC      EA    D MV  G  P+ +T+S+       ++   CK    +   +
Sbjct: 383 NSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI-------LINSYCKAKRVDDGMR 435

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++  + ++ +  +++TY++L+  FC+ G ++ +  +  E+V  G  P   T+  ++  L 
Sbjct: 436 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 495

Query: 454 DRRKMRQAAELL 465
           D  ++ +A E+ 
Sbjct: 496 DNGELNKALEIF 507


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 208/366 (56%), Gaps = 10/366 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVL 161
           +A+ V   M+  GC P   +Y T++A      +L  A R    MRE G  +P + + N +
Sbjct: 170 EAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSM 229

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LCK +G M+ A K+F EM   G  PD  +Y TL++G C++G ++E+  +F EM  + 
Sbjct: 230 VNGLCK-AGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 288

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVT+TSLI+  C++ ++E+A+ L  +MR +G+  N  T+++L+DG CK G    A+
Sbjct: 289 LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDAL 348

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
             ++ M     +P++V Y+ L+NG CK G++  A E++  M+ + +KPD   Y  IIS +
Sbjct: 349 LAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGY 408

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C +G    A     +M+  G+ P+ +T+S       ++++GLC+    N A +++ +M  
Sbjct: 409 CKVGNLDSAFQLNQKMLKKGVLPDAITYS-------SLIRGLCEEKRLNDACELFENMLQ 461

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +  D  TY++LI   CK+G++ K+  + DE++  G LPD  T+S ++  L    + ++
Sbjct: 462 LGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKE 521

Query: 461 AAELLL 466
           A  LL 
Sbjct: 522 AHRLLF 527



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 212/419 (50%), Gaps = 10/419 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ M++ L  A +   A  + D + +E        + ++  GY +V    +++ VF +M
Sbjct: 225 TFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 284

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G  P   ++ +++    +   L+ A      MRE G++    +   LI   CK  G 
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKK-GF 343

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A     EM   G  P    Y  LING C+LG++  A+EL +EME K   P VVTY++
Sbjct: 344 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+  +++ A +L ++M  KGV P+  TYSSL+ GLC+    + A EL + M+   
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 463

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+  TY+TL++G CKEG +++A+ + D M  +G+ PD   Y  +I+      + +EA 
Sbjct: 464 VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAH 523

Query: 352 NFLDEMVLGGITPNRLTWS--------LHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
             L ++      P+ + +            +    +++G C K     A +VY SM +R+
Sbjct: 524 RLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRN 583

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             +D   YS LI   C+ G++ K+     +++  G  P+  +  +++  L++   + +A
Sbjct: 584 WKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 180/353 (50%), Gaps = 46/353 (13%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P V + N ++ AL  +  ++ +A +    M   G  P+ YTY  L+  LC  G++ E
Sbjct: 113 GYAPSVPAYNAVLLAL--SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEE 170

Query: 210 AKELFKEMETKACSPTVVTY------------------------------------TSLI 233
           A  +  +M    C+P  VTY                                     S++
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           NGLC++  +E A ++F+EM  +G+ P+V +Y++L+ G CK GC  +++ +   M  +   
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P++VT+++L++  CK G L++AV ++ +M+ +GL+ +   +  +I  FC  G   +A   
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
           ++EM   GI P+       +  +N ++ G CK    + A ++   M  + +  D +TYS+
Sbjct: 351 VEEMRKCGIQPS-------VVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I+ +CK G++  + ++  +++  G LPD  T+S+++  L + +++  A EL 
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELF 456


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/461 (30%), Positives = 225/461 (48%), Gaps = 50/461 (10%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHR 100
           +G       ++ +I  L  AN F  A +L   +N+  C    +T ++ +      G +  
Sbjct: 39  SGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEE 98

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             D ++   KM E G  P   +Y TV+  L +  +++ A   +  M  +G  P   S N 
Sbjct: 99  ACDLIK---KMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNT 155

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I  LC+ S  +D A ++F EM  R   PDS++YG LI+GL + GK+ EA +LF+ M   
Sbjct: 156 IILGLCQQS-KIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDS 214

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +P+ VTY  +I+G+C + +++EA+ LF+ MRSKG  P+ FT++ L+D  CK G   +A
Sbjct: 215 GITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEA 274

Query: 281 MELLQMMISKRHRPNIVTYSTLL-----------------------------------NG 305
             LL+ M    H P++VTYSTL+                                   +G
Sbjct: 275 FRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHG 334

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK G+++EA E+LD M   G  PD   Y  ++   C  G+ + A   L +MV  G+ PN
Sbjct: 335 LCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPN 394

Query: 366 RLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            +T++        +V GLCK +    A  V+  M++   + +  TY++LI  FC  G + 
Sbjct: 395 VVTYT-------ALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVD 447

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              ++  E+V  G  PD   +  +   L    +  +A E+L
Sbjct: 448 GGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEIL 488



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 186/350 (53%), Gaps = 11/350 (3%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G  +  +  +A ++F +M + G  P+  +Y  V+  +     L  A   ++ MR  G +P
Sbjct: 194 GLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRP 253

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
              + N+LI A CK  G MD AF++ + M + G  PD  TY TLI+GLC + ++ +A+ L
Sbjct: 254 SRFTFNILIDAHCKR-GKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 312

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            ++M  + C PTVVT  +LI+GLC++  ++EA  + + M S G  P+V TY++L+ G C+
Sbjct: 313 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 372

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G + +A ELL  M+++   PN+VTY+ L++GLCK  +L EA  +  +MK  G  P+   
Sbjct: 373 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFT 432

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAF 392
           Y  +I  FC  G+         EMV  GI+P+ +       ++ T+   LCK+  + RA 
Sbjct: 433 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV-------VYGTLAAELCKSGRSARAL 485

Query: 393 QVYLSMRN--RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           ++    R   RS +     Y   +      G +  +   V ++V  G LP
Sbjct: 486 EILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLP 535



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 175/321 (54%), Gaps = 9/321 (2%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E  + P   S  +LI  L K +G ++ A  +F+++ + G TP +  Y +LI+GLC   
Sbjct: 1   MNERNVSPDSWSYGILIDGLAK-AGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMAN 59

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
              +A+ELF +M  + C P+ VTY  +I+  C+   +EEA  L ++M   G  P+V TY+
Sbjct: 60  SFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           ++MDGLCK G   +A+ L   M      PN  +++T++ GLC++ K+ +A ++   M+ +
Sbjct: 120 TVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAR 179

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC- 384
            + PD+  YG +I      GK  EA      M+  GITP+ +T+       N V+ G+C 
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTY-------NVVIHGMCL 232

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               + A +++ SMR++       T++ LI   CK+G + ++ R++  +  DG +PD  T
Sbjct: 233 AYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVT 292

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S +++ L    ++  A  LL
Sbjct: 293 YSTLISGLCSIARVDDARHLL 313



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 165/371 (44%), Gaps = 56/371 (15%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++AL +F S  ++   G R    TF+++I       +   A  LL R+  +        
Sbjct: 236 LDEALELFKSMRSK---GCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVT 292

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G   + R  DA  + + M +  C+PT  +  T++  L +  ++K A      M 
Sbjct: 293 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMV 352

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G  P V + N L+   C+ +G  + A ++  +M  RG  P+  TY  L++GLC+  ++
Sbjct: 353 SSGQSPDVVTYNTLVHGHCR-AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 411

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  +F +M++  C+P + TYT+LI G C +  V+  ++LF EM   G+ P+   Y +L
Sbjct: 412 PEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 471

Query: 268 MDGLCKGGCSSQAMELLQM-------------------------------------MISK 290
              LCK G S++A+E+L+                                      M+  
Sbjct: 472 AAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRG 531

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P     ++L+ GLCK G+  EA  +L+ +       D    GK            +A
Sbjct: 532 GQLPAPERCASLVAGLCKSGQGGEARAVLEEIM------DLAYGGK---------ARGKA 576

Query: 351 ANFLDEMVLGG 361
           A F++EMV  G
Sbjct: 577 AKFVEEMVGKG 587


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/419 (31%), Positives = 226/419 (53%), Gaps = 16/419 (3%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGR 97
           E A+GF  D  T++  ++ L   +    A  ++D + +E  D    T +I ++     G+
Sbjct: 277 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           +    +A  + ++M + GC P   ++ T++A L   N+L+ A    R +   G+ P V +
Sbjct: 337 LE---EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N+LI ALCK  G    A ++F EM N GCTPD  TY TLI+ LC LGK+ +A +L K+M
Sbjct: 394 FNILINALCK-VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 452

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           E+  C  + +TY ++I+GLC+   +EEA  +F++M  +G+  N  T+++L+DGLCK    
Sbjct: 453 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 512

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL+  MIS+  +PN +TY+++L   CK+G +++A +IL+ M   G + D   YG +
Sbjct: 513 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYL 396
           I+  C  G+ Q A   L  M + G+ P         + +N V+Q L + +  R A  ++ 
Sbjct: 573 INGLCKAGRTQVALKVLRGMRIKGMRPTP-------KAYNPVLQSLFRRNNIRDALSLFR 625

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            M       D+LTY  +    C+ G  I ++   + E+V  G +P+  ++  +   L +
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLN 684



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 231/446 (51%), Gaps = 13/446 (2%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           L RA + V  A+++ +  ++    G   D +TF+ ++   V       A  +  R+ +  
Sbjct: 191 LCRAHQ-VRTAVIMLEEMSSR---GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMG 246

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           C  T+     +  GY ++ R  DA+    +    G EP   +Y T +  L + + +  A 
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           +    M + G  P V + N+++  LCKN G ++ A  I  +M +RGC PD  T+ TLI  
Sbjct: 307 KVMDVMVQEGHDPDVFTYNIVVNCLCKN-GQLEEAKGILNQMVDRGCLPDITTFNTLIAA 365

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC   ++ EA +L +++  K  SP V T+  LIN LC+      A+RLFEEM++ G  P+
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY++L+D LC  G   +A++LL+ M S     + +TY+T+++GLCK+ +++EA E+ D
Sbjct: 426 EVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFD 485

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           +M LQG+  +A  +  +I   C   K  +A   +++M+  G+ PN +T+       N+++
Sbjct: 486 QMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITY-------NSIL 538

Query: 381 QGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
              CK  D  +A  +  +M      VD +TY +LI   CK G    + +++  + + G  
Sbjct: 539 THYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           P    ++ V+ +L+ R  +R A  L 
Sbjct: 599 PTPKAYNPVLQSLFRRNNIRDALSLF 624



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 222/424 (52%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  TF+ ++  L  A+Q R A  +L+ ++       E  F ++ +G+       
Sbjct: 174 ARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIE 233

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+RV  +M E GC  T  +   ++    +  +++ A  + +     G +P   + N  +
Sbjct: 234 AALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFV 293

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+N   +  A K+   M   G  PD +TY  ++N LC+ G++ EAK +  +M  + C
Sbjct: 294 NGLCQND-HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGC 352

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P + T+ +LI  LC    +EEA+ L  ++  KGV P+V+T++ L++ LCK G    A+ 
Sbjct: 353 LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALR 412

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M +    P+ VTY+TL++ LC  GKL +A+++L  M+  G       Y  II   C
Sbjct: 413 LFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
              + +EA    D+M L GI+ N +T+       NT++ GLCK    + AF++   M + 
Sbjct: 473 KKMRIEEAEEVFDQMDLQGISRNAITF-------NTLIDGLCKDKKIDDAFELINQMISE 525

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  +++TY+S++T +CK+GDI K+A I++ +  +G   D  T+  ++  L    + + A
Sbjct: 526 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 585

Query: 462 AELL 465
            ++L
Sbjct: 586 LKVL 589



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 245/514 (47%), Gaps = 67/514 (13%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           Q+L  +R + D + AL + ++A A   + F      +  +I KL +       + L+  +
Sbjct: 43  QLLTALREQPDPDAALRMLNAALAR--DDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEM 100

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDKMKE-FGCEPTPKSYITVLAILVEEN 134
            +E   +   +  S    Y       DA+  + ++++  FG +     Y  +L +LVE +
Sbjct: 101 RREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGS 160

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCK--------------------------- 167
           ++KL    Y  M   GI+P V + N L+KALC+                           
Sbjct: 161 KMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFT 220

Query: 168 -------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
                    G+++AA ++   M   GC+    T   LING C+LG++ +A    ++    
Sbjct: 221 TLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIAD 280

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  +TY + +NGLCQ+  V  A+++ + M  +G +P+VFTY+ +++ LCK G   +A
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             +L  M+ +   P+I T++TL+  LC   +L+EA+++  ++ ++G+ PD   +  +I+ 
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------------------------- 374
            C +G    A    +EM   G TP+ +T++  I                           
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 375 --IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
              +NT++ GLC K     A +V+  M  + IS +++T+++LI   CK   I  +  +++
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++ +G  P+  T+++++T    +  +++AA++L
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 115/283 (40%), Gaps = 37/283 (13%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++ +I  L S  +   A DLL  +    C  +   + +I  G  +  R  +
Sbjct: 420 SGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEE 479

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD+M   G      ++ T++  L ++ ++  AF     M   G+QP   + N ++ 
Sbjct: 480 AEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILT 539

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK----------------- 206
             CK  G +  A  I   M   G   D  TYGTLINGLC+ G+                 
Sbjct: 540 HYCK-QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598

Query: 207 ------------------IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMR 247
                             I +A  LF+EM      P  +TY  +  GLC+    ++EA  
Sbjct: 599 PTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFD 658

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
              EM  KG  P   ++  L +GL   G     +  +++++ K
Sbjct: 659 FMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 701



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 3/181 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K ++ A  + +   +E   G + +N T++ +++        + A D+L+ +     ++ 
Sbjct: 509 DKKIDDAFELINQMISE---GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  R   A++V   M+  G  PTPK+Y  VL  L   N ++ A   +R
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E+G  P   +  ++ + LC+  G +  AF    EM ++G  P+  ++  L  GL  L
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685

Query: 205 G 205
           G
Sbjct: 686 G 686


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 227/433 (52%), Gaps = 12/433 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPL 102
           GF+H   T+  M+ KL    +F   E+LL  + +   D T  E +++   R YGR  +  
Sbjct: 114 GFKHTLFTYKSMLQKLGFHGKFNEMENLLSEM-RSNLDNTLLEGVYVEAMRFYGRKGKIQ 172

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+  F++M  F C+P+  SY  ++ ILVE      A + Y  M++  ++  V +  + I
Sbjct: 173 EAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRI 232

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K+ C+ +G   AA ++ R MP  GC  ++  Y T++ G    G    A+ELF EM     
Sbjct: 233 KSFCR-TGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCL 291

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V T+  L++ LC+   V E+ RLF+++  +GV PN+FT++  + GLCK G   +A+ 
Sbjct: 292 CPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVR 351

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  +  +  RP++VTY+T++ GLC++ ++ EA E L +M   G +P+   Y  II  +C
Sbjct: 352 LLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYC 411

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
             G   +A   L + V  G  P+  T+        ++V G C+  DP++A  V+     +
Sbjct: 412 KKGMVVDANRILKDAVFKGFKPDEFTYC-------SLVNGFCQDGDPDQAMAVFKDGLGK 464

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +    + Y++LI   C++G I  + ++++E+   GC PD  T++ ++  L     +  A
Sbjct: 465 GLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDA 524

Query: 462 AELLLLELMNKCV 474
             L+   +   C+
Sbjct: 525 NHLIGDAITKGCI 537



 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 232/462 (50%), Gaps = 11/462 (2%)

Query: 19  LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNK 78
           +Q +  E  +++A+ +    + E   G R D  T++ +I  L   ++   AE+ L ++  
Sbjct: 337 IQGLCKEGSLDRAVRLLGCVSRE---GLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVN 393

Query: 79  EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138
              +  +  + SI  GY +    +DA R+       G +P   +Y +++    ++     
Sbjct: 394 GGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQ 453

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A   ++     G++P +   N LIK LC+  G +  A ++  EM  +GC PD +TY  +I
Sbjct: 454 AMAVFKDGLGKGLRPSIIVYNTLIKGLCQ-QGLILPALQLMNEMAEKGCKPDIWTYNLII 512

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           NGLC++G + +A  L  +  TK C P + TY +L++G C+   ++ A+ L   M S+G+ 
Sbjct: 513 NGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMT 572

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P+V TY++L++GLCK   S + ME+ + M  K   PNI+TY+T++  LC   K+ EAV++
Sbjct: 573 PDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDL 632

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L  MK +GL PD   +G +I+ FC +G    A      M        +   S     +N 
Sbjct: 633 LGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGM------EKQYDVSHTTATYNI 686

Query: 379 VVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++     + +   A +++  M+      D+ TY  LI  FCK G++++  + + E +  G
Sbjct: 687 IISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKG 746

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVD 479
            +P   T+  V+  L    K+++A  ++ L +    V   V+
Sbjct: 747 FIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDTVN 788



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 179/429 (41%), Gaps = 66/429 (15%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEP------------TPKSYITVLAILVEENQL- 136
            IC  +GR  R ++ ++   K KE G +             T  S+   + I  E++ L 
Sbjct: 17  GICAAHGRKTRMMEKVQSMLKAKESGNDEVWRARLMESELRTKSSFKNAILIAGEDDDLG 76

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALC----KNSGTMDAAFKI------------FR 180
           ++     R  R++    C+   +V I+ L        G     F              F 
Sbjct: 77  EVKMEGRRTDRDLVDVFCMKYEDVCIRNLQLIKKTKQGFKHTLFTYKSMLQKLGFHGKFN 136

Query: 181 EMPNRGCTPDSYTYGTLINGL--------CRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           EM N      S    TL+ G+         R GKI EA + F+ M+   C P+V +Y ++
Sbjct: 137 EMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAI 196

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           +N L +     +A +++  M+ K VE +V+TY+  +   C+ G    A+ LL+ M     
Sbjct: 197 MNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGC 256

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
             N V Y T++ G  + G    A E+ D M    L PD   + K++   C  G   E+  
Sbjct: 257 FSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESER 316

Query: 353 FLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVVQGLC 384
             D+++  G+ PN  T+++ I+                             +NTV+ GLC
Sbjct: 317 LFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLC 376

Query: 385 -KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
            K+    A +    M N     +  TY+S+I  +CKKG +  + RI+ + V  G  PDE 
Sbjct: 377 RKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEF 436

Query: 444 TWSAVMTAL 452
           T+ +++   
Sbjct: 437 TYCSLVNGF 445


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/419 (31%), Positives = 226/419 (53%), Gaps = 16/419 (3%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGR 97
           E A+GF  D  T++  ++ L   +    A  ++D + +E  D    T +I ++     G+
Sbjct: 185 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 244

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           +    +A  + ++M + GC P   ++ T++A L   N+L+ A    R +   G+ P V +
Sbjct: 245 LE---EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 301

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N+LI ALCK  G    A ++F EM N GCTPD  TY TLI+ LC LGK+ +A +L K+M
Sbjct: 302 FNILINALCK-VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 360

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           E+  C  + +TY ++I+GLC+   +EEA  +F++M  +G+  N  T+++L+DGLCK    
Sbjct: 361 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 420

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL+  MIS+  +PN +TY+++L   CK+G +++A +IL+ M   G + D   YG +
Sbjct: 421 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 480

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYL 396
           I+  C  G+ Q A   L  M + G+ P         + +N V+Q L + +  R A  ++ 
Sbjct: 481 INGLCKAGRTQVALKVLRGMRIKGMRPTP-------KAYNPVLQSLFRRNNIRDALSLFR 533

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            M       D+LTY  +    C+ G  I ++   + E+V  G +P+  ++  +   L +
Sbjct: 534 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLN 592



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 220/424 (51%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D +TF+ ++   V       A  +  R+ +  C  T+     +  GY ++ R  
Sbjct: 117 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 176

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+    +    G EP   +Y T +  L + + +  A +    M + G  P V + N+++
Sbjct: 177 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 236

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN G ++ A  I  +M +RGC PD  T+ TLI  LC   ++ EA +L +++  K  
Sbjct: 237 NCLCKN-GQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV 295

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP V T+  LIN LC+      A+RLFEEM++ G  P+  TY++L+D LC  G   +A++
Sbjct: 296 SPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALD 355

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M S     + +TY+T+++GLCK+ +++EA E+ D+M LQG+  +A  +  +I   C
Sbjct: 356 LLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLC 415

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
              K  +A   +++M+  G+ PN +T+       N+++   CK  D  +A  +  +M   
Sbjct: 416 KDKKIDDAFELINQMISEGLQPNNITY-------NSILTHYCKQGDIKKAADILETMTAN 468

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              VD +TY +LI   CK G    + +++  + + G  P    ++ V+ +L+ R  +R A
Sbjct: 469 GFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDA 528

Query: 462 AELL 465
             L 
Sbjct: 529 LSLF 532



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 222/424 (52%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  TF+ ++  L  A+Q R A  +L+ ++       E  F ++ +G+       
Sbjct: 82  ARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIE 141

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+RV  +M E GC  T  +   ++    +  +++ A  + +     G +P   + N  +
Sbjct: 142 AALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFV 201

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+N   +  A K+   M   G  PD +TY  ++N LC+ G++ EAK +  +M  + C
Sbjct: 202 NGLCQND-HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGC 260

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P + T+ +LI  LC    +EEA+ L  ++  KGV P+V+T++ L++ LCK G    A+ 
Sbjct: 261 LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALR 320

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M +    P+ VTY+TL++ LC  GKL +A+++L  M+  G       Y  II   C
Sbjct: 321 LFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 380

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
              + +EA    D+M L GI+ N +T+       NT++ GLCK    + AF++   M + 
Sbjct: 381 KKMRIEEAEEVFDQMDLQGISRNAITF-------NTLIDGLCKDKKIDDAFELINQMISE 433

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  +++TY+S++T +CK+GDI K+A I++ +  +G   D  T+  ++  L    + + A
Sbjct: 434 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 493

Query: 462 AELL 465
            ++L
Sbjct: 494 LKVL 497



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 215/445 (48%), Gaps = 75/445 (16%)

Query: 96  GRVHRPLDA---MRVFDKMKE---------FGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           G VH  LD+    ++FD   +         FG +     Y  +L +LVE +++KL    Y
Sbjct: 18  GVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVY 77

Query: 144 RHMREIGIQPCVASLNVLIKALCK----------------------------------NS 169
             M   GI+P V + N L+KALC+                                    
Sbjct: 78  SEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEE 137

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G+++AA ++   M   GC+    T   LING C+LG++ +A    ++       P  +TY
Sbjct: 138 GSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITY 197

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            + +NGLCQ+  V  A+++ + M  +G +P+VFTY+ +++ LCK G   +A  +L  M+ 
Sbjct: 198 NTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVD 257

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           +   P+I T++TL+  LC   +L+EA+++  ++ ++G+ PD   +  +I+  C +G    
Sbjct: 258 RGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHL 317

Query: 350 AANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVVQ 381
           A    +EM   G TP+ +T++  I                              +NT++ 
Sbjct: 318 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIID 377

Query: 382 GLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLC K     A +V+  M  + IS +++T+++LI   CK   I  +  ++++++ +G  P
Sbjct: 378 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQP 437

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
           +  T+++++T    +  +++AA++L
Sbjct: 438 NNITYNSILTHYCKQGDIKKAADIL 462



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 115/283 (40%), Gaps = 37/283 (13%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++ +I  L S  +   A DLL  +    C  +   + +I  G  +  R  +
Sbjct: 328 SGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEE 387

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD+M   G      ++ T++  L ++ ++  AF     M   G+QP   + N ++ 
Sbjct: 388 AEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILT 447

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK----------------- 206
             CK  G +  A  I   M   G   D  TYGTLINGLC+ G+                 
Sbjct: 448 HYCK-QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 506

Query: 207 ------------------IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMR 247
                             I +A  LF+EM      P  +TY  +  GLC+    ++EA  
Sbjct: 507 PTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFD 566

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
              EM  KG  P   ++  L +GL   G     +  +++++ K
Sbjct: 567 FMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 609



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 3/181 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K ++ A  + +   +E   G + +N T++ +++        + A D+L+ +     ++ 
Sbjct: 417 DKKIDDAFELINQMISE---GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 473

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  R   A++V   M+  G  PTPK+Y  VL  L   N ++ A   +R
Sbjct: 474 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 533

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E+G  P   +  ++ + LC+  G +  AF    EM ++G  P+  ++  L  GL  L
Sbjct: 534 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 593

Query: 205 G 205
           G
Sbjct: 594 G 594


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/419 (31%), Positives = 226/419 (53%), Gaps = 16/419 (3%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGR 97
           E A+GF  D  T++  ++ L   +    A  ++D + +E  D    T +I ++     G+
Sbjct: 277 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           +    +A  + ++M + GC P   ++ T++A L   N+L+ A    R +   G+ P V +
Sbjct: 337 LE---EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N+LI ALCK  G    A ++F EM N GCTPD  TY TLI+ LC LGK+ +A +L K+M
Sbjct: 394 FNILINALCK-VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 452

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           E+  C  + +TY ++I+GLC+   +EEA  +F++M  +G+  N  T+++L+DGLCK    
Sbjct: 453 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 512

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL+  MIS+  +PN +TY+++L   CK+G +++A +IL+ M   G + D   YG +
Sbjct: 513 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYL 396
           I+  C  G+ Q A   L  M + G+ P         + +N V+Q L + +  R A  ++ 
Sbjct: 573 INGLCKAGRTQVALKVLRGMRIKGMRPTP-------KAYNPVLQSLFRRNNIRDALSLFR 625

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            M       D+LTY  +    C+ G  I ++   + E+V  G +P+  ++  +   L +
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLN 684



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 220/424 (51%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D +TF+ ++   V       A  +  R+ +  C  T+     +  GY ++ R  
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+    +    G EP   +Y T +  L + + +  A +    M + G  P V + N+++
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 328

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN G ++ A  I  +M +RGC PD  T+ TLI  LC   ++ EA +L +++  K  
Sbjct: 329 NCLCKN-GQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV 387

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP V T+  LIN LC+      A+RLFEEM++ G  P+  TY++L+D LC  G   +A++
Sbjct: 388 SPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALD 447

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M S     + +TY+T+++GLCK+ +++EA E+ D+M LQG+  +A  +  +I   C
Sbjct: 448 LLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLC 507

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
              K  +A   +++M+  G+ PN +T+       N+++   CK  D  +A  +  +M   
Sbjct: 508 KDKKIDDAFELINQMISEGLQPNNITY-------NSILTHYCKQGDIKKAADILETMTAN 560

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              VD +TY +LI   CK G    + +++  + + G  P    ++ V+ +L+ R  +R A
Sbjct: 561 GFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDA 620

Query: 462 AELL 465
             L 
Sbjct: 621 LSLF 624



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 222/424 (52%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  TF+ ++  L  A+Q R A  +L+ ++       E  F ++ +G+       
Sbjct: 174 ARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIE 233

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+RV  +M E GC  T  +   ++    +  +++ A  + +     G +P   + N  +
Sbjct: 234 AALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFV 293

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+N   +  A K+   M   G  PD +TY  ++N LC+ G++ EAK +  +M  + C
Sbjct: 294 NGLCQND-HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGC 352

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P + T+ +LI  LC    +EEA+ L  ++  KGV P+V+T++ L++ LCK G    A+ 
Sbjct: 353 LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALR 412

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M +    P+ VTY+TL++ LC  GKL +A+++L  M+  G       Y  II   C
Sbjct: 413 LFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
              + +EA    D+M L GI+ N +T+       NT++ GLCK    + AF++   M + 
Sbjct: 473 KKMRIEEAEEVFDQMDLQGISRNAITF-------NTLIDGLCKDKKIDDAFELINQMISE 525

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  +++TY+S++T +CK+GDI K+A I++ +  +G   D  T+  ++  L    + + A
Sbjct: 526 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 585

Query: 462 AELL 465
            ++L
Sbjct: 586 LKVL 589



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 245/514 (47%), Gaps = 67/514 (13%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           Q+L  +R + D + AL + ++A A   + F      +  +I KL +       + L+  +
Sbjct: 43  QLLTALREQPDPDAALRMLNAALAR--DDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEM 100

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDKMKE-FGCEPTPKSYITVLAILVEEN 134
            +E   +   +  S    Y       DA+  + ++++  FG +     Y  +L +LVE +
Sbjct: 101 RREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGS 160

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCK--------------------------- 167
           ++KL    Y  M   GI+P V + N L+KALC+                           
Sbjct: 161 KMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFT 220

Query: 168 -------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
                    G+++AA ++   M   GC+    T   LING C+LG++ +A    ++    
Sbjct: 221 TLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIAD 280

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  +TY + +NGLCQ+  V  A+++ + M  +G +P+VFTY+ +++ LCK G   +A
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             +L  M+ +   P+I T++TL+  LC   +L+EA+++  ++ ++G+ PD   +  +I+ 
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------------------------- 374
            C +G    A    +EM   G TP+ +T++  I                           
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 375 --IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
              +NT++ GLC K     A +V+  M  + IS +++T+++LI   CK   I  +  +++
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++ +G  P+  T+++++T    +  +++AA++L
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 115/283 (40%), Gaps = 37/283 (13%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++ +I  L S  +   A DLL  +    C  +   + +I  G  +  R  +
Sbjct: 420 SGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEE 479

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD+M   G      ++ T++  L ++ ++  AF     M   G+QP   + N ++ 
Sbjct: 480 AEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILT 539

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK----------------- 206
             CK  G +  A  I   M   G   D  TYGTLINGLC+ G+                 
Sbjct: 540 HYCK-QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598

Query: 207 ------------------IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMR 247
                             I +A  LF+EM      P  +TY  +  GLC+    ++EA  
Sbjct: 599 PTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFD 658

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
              EM  KG  P   ++  L +GL   G     +  +++++ K
Sbjct: 659 FMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 701



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 3/181 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K ++ A  + +   +E   G + +N T++ +++        + A D+L+ +     ++ 
Sbjct: 509 DKKIDDAFELINQMISE---GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  R   A++V   M+  G  PTPK+Y  VL  L   N ++ A   +R
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E+G  P   +  ++ + LC+  G +  AF    EM ++G  P+  ++  L  GL  L
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685

Query: 205 G 205
           G
Sbjct: 686 G 686


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 144/530 (27%), Positives = 258/530 (48%), Gaps = 77/530 (14%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
            + +Q+L L+R + D + AL +F  A+A+    +    S F  ++ +L  A  F     L
Sbjct: 57  FSPSQLLDLLRRQPDSSSALSLFQWASAQ--PNYSAHPSVFHELLRQLARAGSFDSMLTL 114

Query: 73  LDRVNKEKCDITEDIFLSICRGYG---RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           L +++  K  + E  FL     Y     +H  ++ + +  + ++F  +P  + Y   L++
Sbjct: 115 LRQMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLME-RDFAVKPDTRFYNVALSL 173

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           LV+ N+LKL    +  M    + P V++ N+LI+ALCK +  +  A  +  +MPN G  P
Sbjct: 174 LVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCK-AHQLRPAILMLEDMPNYGLRP 232

Query: 190 DSYTYGT-----------------------------------LINGLCRLGKIYEAKELF 214
           D  T+ T                                   L+NGLC+ G+I EA    
Sbjct: 233 DEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFI 292

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            E E     P  VT+ +L+NGLC++  +++ + + + M  KG E +V+TY+SL+ GLCK 
Sbjct: 293 YEEE--GFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKL 350

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G   +A+E+L  M+S+   PN VTY+TL+  LCKE  ++ A E+   +  +G+ PD   +
Sbjct: 351 GEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTF 410

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------------------- 374
             +I   C     + A    +EM   G  P+  T+S+ I                     
Sbjct: 411 NSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMEL 470

Query: 375 --------IHNTVVQGLCKTDPNR---AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                   ++NT++ GLCK   NR   A  ++  M    +S  S+TY++LI   CK   +
Sbjct: 471 SGCARNVVVYNTLIDGLCKN--NRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRV 528

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            ++A+++D+++++G  PD+ T++ ++     +  +++AA+++    +N C
Sbjct: 529 EEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGC 578



 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 223/452 (49%), Gaps = 40/452 (8%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           + D   +++ +S LV AN+ +  E L  ++  +        F  + R   + H+   A+ 
Sbjct: 161 KPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAIL 220

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           + + M  +G  P  K++ T++   +EE  ++ A R    M E G +    S+NVL+  LC
Sbjct: 221 MLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLC 280

Query: 167 KNSGTMDAAFKIFRE--------------------------------MPNRGCTPDSYTY 194
           K     +A   I+ E                                M  +G   D YTY
Sbjct: 281 KEGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTY 340

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            +LI+GLC+LG+I EA E+   M ++ C P  VTY +LI  LC+   VE A  L   + S
Sbjct: 341 NSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTS 400

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           KGV P+V T++SL+ GLC       AMEL + M  K   P+  TYS L+  LC E +L+E
Sbjct: 401 KGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKE 460

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+ +L  M+L G   +  +Y  +I   C   +  +A +  D+M + G++ + +T+     
Sbjct: 461 ALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTY----- 515

Query: 375 IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             NT++ GLCK+     A Q+   M    +  D  TY++++  FC++GDI ++A IV  +
Sbjct: 516 --NTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNM 573

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            L+GC PD  T+  ++  L    ++  A++LL
Sbjct: 574 TLNGCEPDIVTYGTLIGGLCKAGRVDVASKLL 605



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 145/499 (29%), Positives = 248/499 (49%), Gaps = 47/499 (9%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           K  T+  +  +  L++A    NK  ++    +   A+    D STF+++I  L  A+Q R
Sbjct: 161 KPDTRFYNVALSLLVKA----NKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLR 216

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           PA  +L+ +        E  F ++ +G+        A+R+ + M E GCE T  S   ++
Sbjct: 217 PAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLV 276

Query: 128 AILVEENQLKLAFRFYRH---------------------------------MREIGIQPC 154
             L +E +++ A RF                                    M E G +  
Sbjct: 277 NGLCKEGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELD 336

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           V + N LI  LCK  G +D A +I   M +R C P++ TY TLI  LC+   +  A EL 
Sbjct: 337 VYTYNSLISGLCK-LGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELA 395

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           + + +K   P V T+ SLI GLC + + E AM LFEEM+ KG +P+ FTYS L++ LC  
Sbjct: 396 RVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSE 455

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
               +A+ LL+ M       N+V Y+TL++GLCK  ++ +A +I D+M++ G+   +  Y
Sbjct: 456 RRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTY 515

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393
             +I+  C   + +EAA  +D+M++ G+ P++ T++       T+++  C+  D  RA  
Sbjct: 516 NTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYT-------TMLKYFCQQGDIKRAAD 568

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +  +M       D +TY +LI   CK G +  +++++  + + G +     ++ V+ AL 
Sbjct: 569 IVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALC 628

Query: 454 DRRKMRQAAELLLLELMNK 472
            R++ ++A   L  E+M K
Sbjct: 629 KRKRTKEAMR-LFREMMEK 646



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 190/375 (50%), Gaps = 43/375 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  TF+ +++ L      +   +++D + ++  ++    + S+  G  ++    +A
Sbjct: 297 GFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEA 356

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +   M    CEP   +Y T++  L +EN ++ A    R +   G+ P V + N LI+ 
Sbjct: 357 VEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQG 416

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYG----------------------------- 195
           LC  S   + A ++F EM  +GC PD +TY                              
Sbjct: 417 LCLTSNR-EIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCAR 475

Query: 196 ------TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
                 TLI+GLC+  ++ +A+++F +ME    S + VTY +LINGLC+SK VEEA +L 
Sbjct: 476 NVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLM 535

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           ++M  +G++P+ FTY++++   C+ G   +A +++Q M      P+IVTY TL+ GLCK 
Sbjct: 536 DQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKA 595

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G++  A ++L  ++++G+      Y  +I   C   + +EA     EM+  G  P+ +T+
Sbjct: 596 GRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITY 655

Query: 370 SLHIRIHNTVVQGLC 384
            +       V +GLC
Sbjct: 656 KI-------VFRGLC 663



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 162/336 (48%), Gaps = 13/336 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFD 109
           T++ +I  L   N    A +L  RV   K  +  D+  F S+ +G         AM +F+
Sbjct: 374 TYNTLIGTLCKENHVEAATEL-ARVLTSK-GVLPDVCTFNSLIQGLCLTSNREIAMELFE 431

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +MKE GC+P   +Y  ++  L  E +LK A    + M   G    V   N LI  LCKN+
Sbjct: 432 EMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNN 491

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
              DA   IF +M   G +  S TY TLINGLC+  ++ EA +L  +M  +   P   TY
Sbjct: 492 RVGDAE-DIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTY 550

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           T+++   CQ   ++ A  + + M   G EP++ TY +L+ GLCK G    A +LL+ +  
Sbjct: 551 TTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQM 610

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD-IGKYQ 348
           K        Y+ ++  LCK  + +EA+ +   M  +G  PD   Y  +    C+  G  Q
Sbjct: 611 KGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQ 670

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           EA +F  EM+  GI P   ++         + +GLC
Sbjct: 671 EAVDFTVEMLEKGILPEFPSFGF-------LAEGLC 699



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 148/303 (48%), Gaps = 2/303 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  TF+ +I  L   +    A +L + + ++ CD  E  +  +        R  
Sbjct: 400 SKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLK 459

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +  +M+  GC      Y T++  L + N++  A   +  M  +G+     + N LI
Sbjct: 460 EALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLI 519

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK+    +AA ++  +M   G  PD +TY T++   C+ G I  A ++ + M    C
Sbjct: 520 NGLCKSKRVEEAA-QLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGC 578

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VTY +LI GLC++  V+ A +L   ++ KG+      Y+ ++  LCK   + +AM 
Sbjct: 579 EPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMR 638

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCK-EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           L + M+ K   P+++TY  +  GLC   G +QEAV+    M  +G+ P+   +G +    
Sbjct: 639 LFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGL 698

Query: 342 CDI 344
           C +
Sbjct: 699 CSL 701



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 140/315 (44%), Gaps = 43/315 (13%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T+S++I  L S  + + A  LL  +    C     ++ ++  G  + +R  DA  +F
Sbjct: 441 DEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIF 500

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M+  G   +  +Y T++  L +  +++ A +    M   G++P   +   ++K  C+ 
Sbjct: 501 DQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQ 560

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A  I + M   GC PD  TYGTLI GLC+ G++  A +L + ++ K    T   
Sbjct: 561 -GDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQA 619

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY------------------------ 264
           Y  +I  LC+ K  +EAMRLF EM  KG  P+V TY                        
Sbjct: 620 YNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEM 679

Query: 265 ------------SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
                         L +GLC        ++L+ M++ K       + ++++ G  K  K 
Sbjct: 680 LEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQ--SETSIIRGFLKIQKF 737

Query: 313 QEAV----EILDRMK 323
            +A+     ILDR K
Sbjct: 738 NDALANLGAILDRKK 752



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 3/179 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K V +A  + D    E   G + D  T++ M+         + A D++  +    C+   
Sbjct: 526 KRVEEAAQLMDQMIME---GLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDI 582

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + ++  G  +  R   A ++   ++  G   TP++Y  V+  L +  + K A R +R 
Sbjct: 583 VTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFRE 642

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
           M E G  P V +  ++ + LC   G +  A     EM  +G  P+  ++G L  GLC L
Sbjct: 643 MMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSL 701


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 245/477 (51%), Gaps = 14/477 (2%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN 64
           T+  W  ++   +++ +I  +++++ AL IF  A   +  GF H+  T+  ++ KL  A 
Sbjct: 37  TIKPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHP-GFTHNYDTYHSILFKLSRAR 95

Query: 65  QFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
            F P E L+  +      I   E++F+ + R YG   R   +MR+F ++ +FG + + +S
Sbjct: 96  AFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRS 155

Query: 123 YITVLAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
             T+L +L++  +  L    +++ +E  GI P + + N+L+KALCK +  +++A+K+  E
Sbjct: 156 LNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKN-DIESAYKVLDE 214

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           +P  G  P+  TY T++ G    G +  AK + +EM  +   P  +TYT L++G C+   
Sbjct: 215 IPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGR 274

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
             EA  + ++M    +EPN  TY  ++  LCK   S +A  +   M+ +   P+      
Sbjct: 275 FSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCK 334

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           +++ LC++ K+ EA  +  +M      PD  L   +I   C  G+  EA    DE   G 
Sbjct: 335 VIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGS 394

Query: 362 ITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           I P+ LT+       NT++ G+C K +   A +++  M  R    ++ TY+ LI    K 
Sbjct: 395 I-PSLLTY-------NTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKN 446

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           G++ +  R+++E++  GC P++ T+  +   L    K   A +++ + +MN  V+ E
Sbjct: 447 GNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVSMAVMNGKVDKE 503



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 162/344 (47%), Gaps = 8/344 (2%)

Query: 35  FDSATAEYAN-----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           FD   A + N     G   +  T +L++  L   N    A  +LD +           + 
Sbjct: 169 FDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYT 228

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           +I  GY        A RV ++M + G  P   +Y  ++    +  +   A      M + 
Sbjct: 229 TILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKN 288

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            I+P   +  V+I+ALCK   + +A   +F EM +R   PDS     +I+ LC   K+ E
Sbjct: 289 EIEPNEVTYGVMIRALCKEKKSGEAR-NMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDE 347

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  L+++M    C P     ++LI+ LC+   V EA +LF+E   KG  P++ TY++L+ 
Sbjct: 348 ACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEF-DKGSIPSLLTYNTLIA 406

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G+C+ G  ++A  L   M  ++ +PN  TY+ L+ GL K G ++E V +L+ M   G  P
Sbjct: 407 GMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFP 466

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +   +  +      +GK ++A   +   V+ G   ++ +W L +
Sbjct: 467 NKTTFLILFEGLQKLGKEEDAIKIVSMAVMNGKV-DKESWELFL 509


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 217/414 (52%), Gaps = 9/414 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T ++M+     A     A  L+D +  +        + S+ +G  R  R   A  VF
Sbjct: 193 DVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVF 252

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M   G  P  +S+  ++       +L+ A RFY+ MR   + P V S + LI  L   
Sbjct: 253 RAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLI-GLFTR 311

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G MD A +  REM   G  PD   Y  +I G CR G + EA  +  EM    C P VVT
Sbjct: 312 RGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVT 371

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +L+NGLC+ + + +A  L  EM+ +GV P++ T+++L+ G C+ G   +A++    + 
Sbjct: 372 YNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTIS 431

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +R RP+IVTY+TL++G+C++G L +A E+ D M  + + P+   Y  +I   C+ G+  
Sbjct: 432 DQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVD 491

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A  FLDEMV  GI PN +T+       N++++G C++ + ++  Q    MR+  +  D 
Sbjct: 492 NAFAFLDEMVNKGIVPNIMTY-------NSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDL 544

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +TY++LI  + K+G +H++  ++  +  +   PD  T++ +++       M++A
Sbjct: 545 ITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEA 598



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 111/320 (34%), Positives = 178/320 (55%), Gaps = 7/320 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  G+ R    L+A+RV D+M  FGC P   +Y T+L  L +E +L  A      M
Sbjct: 336 IYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEM 395

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +E G+ P + +   LI   C++ G ++ A + F  + ++   PD  TY TLI+G+CR G 
Sbjct: 396 KERGVPPDLCTFTTLIHGYCRD-GNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGD 454

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A EL+ +M ++   P  VTY+ LI+  C+   V+ A    +EM +KG+ PN+ TY+S
Sbjct: 455 LGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNS 514

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G  S+  + L  M   +  P+++TY+TL++G  KEGK+ EA  +L  M+ + 
Sbjct: 515 IIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENEN 574

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           ++PDA  Y  IIS F   G  QEA     +M   GI P+R T+   I  H  VV G  K 
Sbjct: 575 VQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGH--VVAGNSK- 631

Query: 387 DPNRAFQVYLSMRNRSISVD 406
              ++FQ++  M  + ++ D
Sbjct: 632 ---KSFQLHDEMLQKGLAPD 648



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 191/363 (52%), Gaps = 9/363 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM + D M   G +P   +Y +VL  L+   +   A   +R M   G+ P V S N+LI 
Sbjct: 213 AMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIG 272

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+ +G ++ A + ++EM  R  TPD  ++  LI    R G++  A E  +EM      
Sbjct: 273 GFCR-AGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLM 331

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  V YT +I G C++  + EA+R+ +EM + G  P+V TY++L++GLCK    S A EL
Sbjct: 332 PDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEEL 391

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M  +   P++ T++TL++G C++G +++A++  D +  Q L+PD   Y  +I   C 
Sbjct: 392 LNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCR 451

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
            G   +A    D+M    I PN +T+S+ I  H       C K   + AF     M N+ 
Sbjct: 452 QGDLGKANELWDDMHSREIFPNHVTYSILIDSH-------CEKGQVDNAFAFLDEMVNKG 504

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  + +TY+S+I  +C+ G++ K  + + ++  D  +PD  T++ ++       KM +A 
Sbjct: 505 IVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAF 564

Query: 463 ELL 465
            LL
Sbjct: 565 NLL 567



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 160/311 (51%), Gaps = 13/311 (4%)

Query: 157 SLNVLIKALCK--NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           +LN+++ + CK    G +D    +  EM  R   PD  T+  +++   R G +  A  L 
Sbjct: 161 TLNIMVHSYCKTLQFGEVDT---VISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALI 217

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
             M +K   P +VTY S++ GL ++   ++A  +F  M + GV P+V +++ L+ G C+ 
Sbjct: 218 DSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRA 277

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G   +A+   + M  +R  P++V++S L+    + G++  A E L  M+  GL PD  +Y
Sbjct: 278 GELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIY 337

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQ 393
             +I  FC  G   EA    DEMV  G  P+ +T+       NT++ GLCK    + A +
Sbjct: 338 TMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTY-------NTLLNGLCKERRLSDAEE 390

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +   M+ R +  D  T+++LI  +C+ G+I K+ +  D +      PD  T++ ++  + 
Sbjct: 391 LLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMC 450

Query: 454 DRRKMRQAAEL 464
            +  + +A EL
Sbjct: 451 RQGDLGKANEL 461



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 153/317 (48%), Gaps = 36/317 (11%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +++ L    +   AE+LL+                                  
Sbjct: 368 DVVTYNTLLNGLCKERRLSDAEELLN---------------------------------- 393

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +MKE G  P   ++ T++     +  ++ A +F+  + +  ++P + + N LI  +C+ 
Sbjct: 394 -EMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQ 452

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A +++ +M +R   P+  TY  LI+  C  G++  A     EM  K   P ++T
Sbjct: 453 -GDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMT 511

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y S+I G C+S +V +  +   +MR   V P++ TY++L+ G  K G   +A  LL++M 
Sbjct: 512 YNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIME 571

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           ++  +P+ VTY+ +++G    G +QEA  +  +M  +G++PD   Y  +I+     G  +
Sbjct: 572 NENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSK 631

Query: 349 EAANFLDEMVLGGITPN 365
           ++    DEM+  G+ P+
Sbjct: 632 KSFQLHDEMLQKGLAPD 648



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 8/242 (3%)

Query: 226 VVTYT--SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           V TYT   +++  C++    E   +  EM  + V P+V T++ ++D   + G    AM L
Sbjct: 157 VNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMAL 216

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M+SK  +P +VTY+++L GL + G+  +A E+   M   G+ PD   +  +I  FC 
Sbjct: 217 IDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCR 276

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
            G+ +EA  F  EM    +TP+ +++S  I +         + + + A +    MR   +
Sbjct: 277 AGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTR------RGEMDHAAEYLREMREFGL 330

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D + Y+ +I  FC+ G + ++ R+ DE+V  GCLPD  T++ ++  L   R++  A E
Sbjct: 331 MPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEE 390

Query: 464 LL 465
           LL
Sbjct: 391 LL 392


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 207/372 (55%), Gaps = 10/372 (2%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           GR HR  +A+ +   M+  GC P   +Y T++A      ++  A R    M + G++P +
Sbjct: 162 GRGHRK-EALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNL 220

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N ++  +CK +G M+ A K+F EM   G  PD  +Y TL+ G C+ G  +EA  +F 
Sbjct: 221 VTFNSMVNGMCK-AGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFA 279

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM  K   P VVT+TSLI+ +C++ ++E A+ L  +MR +G++ N  T+++L+DG CK G
Sbjct: 280 EMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKG 339

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
               A+  ++ M   R +P++V Y+ L+NG C  G++ EA E+L  M+ +GLKPD   Y 
Sbjct: 340 FLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYS 399

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
            IIS +C       A     +M+  G+ P+ +T+S  IR+       LC+    + A  +
Sbjct: 400 TIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRV-------LCEEKRLSDAHVL 452

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           + +M    +  D  TY+SLI   CK+G++ ++  + D++V  G LPD  T+S ++  L  
Sbjct: 453 FKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSK 512

Query: 455 RRKMRQAAELLL 466
             +  +A +LL 
Sbjct: 513 SARAMEAQQLLF 524



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 195/354 (55%), Gaps = 14/354 (3%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           G  P+  +Y  VL + + +  L  A RF+  M   G+ P V + N+LI+ALC   G    
Sbjct: 111 GYVPSVLAYNAVL-LALSDASLTSARRFFDSMLSDGVAPNVYTYNILIRALC-GRGHRKE 168

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A  I R+M   GC P+  TY TL+    R G++  A+ L   M      P +VT+ S++N
Sbjct: 169 ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVN 228

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G+C++  +E+A ++F+EM  +G+ P+  +Y++L+ G CK GCS +A+ +   M  K   P
Sbjct: 229 GMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMP 288

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++VT+++L++ +CK G L+ AV ++ +M+ +GL+ +   +  +I  FC  G       FL
Sbjct: 289 DVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKG-------FL 341

Query: 355 DEMVLG--GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
           D+ +L   G+   R+  S  +  +N ++ G C     + A ++   M  + +  D +TYS
Sbjct: 342 DDALLAVRGMRQCRIKPS--VVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYS 399

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++I+ +CK  D H +  +  +++  G LPD  T+S+++  L + +++  A  L 
Sbjct: 400 TIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLF 453



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 220/444 (49%), Gaps = 11/444 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  TF+ M++ +  A +   A  + D + +E        + ++  GY +     +A
Sbjct: 215 GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEA 274

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + VF +M + G  P   ++ +++ ++ +   L+ A    R MRE G+Q    +   LI  
Sbjct: 275 LSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDG 334

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +D A    R M      P    Y  LING C +G++ EA+EL  EME K   P
Sbjct: 335 FCKK-GFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 393

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY+++I+  C++     A  L ++M  KGV P+  TYSSL+  LC+    S A  L 
Sbjct: 394 DVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLF 453

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + MI    +P+  TY++L++G CKEG ++ A+ + D+M   G+ PD   Y  +I+     
Sbjct: 454 KNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKS 513

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWS--LH------IRIHNTVVQGLC-KTDPNRAFQVY 395
            +  EA   L ++      P    +   +H      ++    +++G C K   N A +VY
Sbjct: 514 ARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVY 573

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            SM +R+ ++D   YS LI   C+ G++ K+     +++  G  P+  +  +++  L++ 
Sbjct: 574 QSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFE- 632

Query: 456 RKMRQAAELLLLELMNKCVEAEVD 479
             M   A+ ++ +L+N C  A+ +
Sbjct: 633 NGMVVEADQVIQQLLNCCSLADAE 656



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 138/305 (45%), Gaps = 22/305 (7%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T+S +IS          A +L  ++ ++        + S+ R      R  
Sbjct: 388 AKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLS 447

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F  M + G +P   +Y +++    +E  ++ A   +  M + G+ P V + +VLI
Sbjct: 448 DAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLI 507

Query: 163 KALCKNSGTMDAA---FKIFREMPNRGCTPDSYTYGTLIN---------------GLCRL 204
             L K++  M+A    FK++ E P     P +  Y  L++               G C  
Sbjct: 508 NGLSKSARAMEAQQLLFKLYHEEP----IPANTKYDALMHCCRKAELKSVLALLKGFCMK 563

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G + EA ++++ M  +  +     Y+ LI+G C++ +V +A+   ++M  +G  PN  + 
Sbjct: 564 GLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTST 623

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            SL+ GL + G   +A +++Q +++     +      L++    EG +   +++L  M  
Sbjct: 624 ISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAK 683

Query: 325 QGLKP 329
            GL P
Sbjct: 684 DGLLP 688


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 226/436 (51%), Gaps = 13/436 (2%)

Query: 35  FDSATAEYAN----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           FD A   +A+    G      T+++MI           A DL+ ++ ++        + +
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G  +  R  +A+ +F++M+  GC P  +S+ T++  L +++++  A + +  M    
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I P   S  +LI  L K +G ++ A+K+F+ M + G TP + TY  +I+G+C    + EA
Sbjct: 181 IPPDSWSYGILIDGLAK-AGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            ELFK M +K C P+  T+  LI+  C+   ++EA RL + M   G  P+V TYS+L+ G
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISG 299

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC       A  LL+ M+ ++ +P +VT +TL++GLCK G+++EA E+LD M   G  PD
Sbjct: 300 LCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              Y  ++   C  G+ + A   L +MV  G+ PN +T++        +V GLCK +   
Sbjct: 360 VVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYT-------ALVSGLCKANRLP 412

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  V+  M++   + +  TY++LI  FC  G +    ++  E+V  G  PD   +  + 
Sbjct: 413 EACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLA 472

Query: 450 TALWDRRKMRQAAELL 465
             L    +  +A E+L
Sbjct: 473 AELCKSGRSARALEIL 488



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 187/350 (53%), Gaps = 11/350 (3%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G  +  +  +A ++F +M + G  P+  +Y  V+  +     L  A   ++ MR  G +P
Sbjct: 194 GLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRP 253

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
              + N+LI A CK  G +D AF++ + M + G  PD  TY TLI+GLC + ++ +A+ L
Sbjct: 254 SRFTFNILIDAHCKR-GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 312

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            ++M  + C PTVVT  +LI+GLC++  ++EA  + + M S G  P+V TY++L+ G C+
Sbjct: 313 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 372

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G + +A ELL  M+++   PN+VTY+ L++GLCK  +L EA  +  +MK  G  P+   
Sbjct: 373 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFT 432

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAF 392
           Y  +I  FC  G+         EMV  GI+P+ +       ++ T+   LCK+  + RA 
Sbjct: 433 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV-------VYGTLAAELCKSGRSARAL 485

Query: 393 QVYLSMRN--RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           ++    R   RS +     Y   +    + G +  +   V ++V  G LP
Sbjct: 486 EILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLP 535



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 174/321 (54%), Gaps = 9/321 (2%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E  + P   S  +LI  L K +G ++ A  +F+++ + G TP +  Y +LI+GLC   
Sbjct: 1   MNERNVSPDSWSYGILIDGLAK-AGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMAN 59

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
              +A+ELF +M  + C P+ VTY  +I+  C+   +EEA  L ++M   G  P+V TY+
Sbjct: 60  SFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           ++MDGLCK     +A+ L   M      PN  +++T++ GLC++ K+ +A ++   M+ +
Sbjct: 120 TVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAK 179

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC- 384
            + PD+  YG +I      GK  EA      M+  GITP+ +T+       N V+ G+C 
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTY-------NVVIHGMCL 232

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               + A +++ SMR++       T++ LI   CK+G + ++ R++  +  DG +PD  T
Sbjct: 233 AYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVT 292

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S +++ L    ++  A  LL
Sbjct: 293 YSTLISGLCSIARVDDARHLL 313



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 165/371 (44%), Gaps = 56/371 (15%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++AL +F S  ++   G R    TF+++I       +   A  LL R+  +        
Sbjct: 236 LDEALELFKSMRSK---GCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVT 292

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G   + R  DA  + + M +  C+PT  +  T++  L +  ++K A      M 
Sbjct: 293 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMV 352

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G  P V + N L+   C+ +G  + A ++  +M  RG  P+  TY  L++GLC+  ++
Sbjct: 353 SSGQSPDVVTYNTLVHGHCR-AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 411

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  +F +M++  C+P + TYT+LI G C +  V+  ++LF EM   G+ P+   Y +L
Sbjct: 412 PEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 471

Query: 268 MDGLCKGGCSSQAMELLQM-------------------------------------MISK 290
              LCK G S++A+E+L+                                      M+  
Sbjct: 472 AAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRG 531

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P     ++L+ GLCK G+  EA  +L+ +       D    GK            +A
Sbjct: 532 GQLPAPERCASLVAGLCKSGQGGEARAVLEEIM------DLAYGGK---------ARGKA 576

Query: 351 ANFLDEMVLGG 361
           A F++EMV  G
Sbjct: 577 AKFVEEMVGKG 587


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 235/434 (54%), Gaps = 10/434 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I+          A +L+D ++ +        + +I  G  +  + L A
Sbjct: 127 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 186

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             V D+M + G  P   +Y  +L      + +  A R +  M   G+ P + S + LI  
Sbjct: 187 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 246

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L KN G +D A K FR+M N G  PD+  Y  LI G CR G + EA ++  EM  + C  
Sbjct: 247 LSKN-GCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVL 305

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +++NGLC+ K + EA  LF EM  +GV P+ +T+++L++G  K G  ++A+ L 
Sbjct: 306 DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLF 365

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           +MMI +  +P++VTY+TL++G CK  ++++  E+ + M  + + P+   YG +I+ +C++
Sbjct: 366 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 425

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           G   EA    DEMV  G     +T        NT+V+G C+  +  +A +   +M  + I
Sbjct: 426 GCVSEAFRLWDEMVEKGFEATIITC-------NTIVKGYCRAGNAVKADEFLSNMLLKGI 478

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D +TY++LI  F K+ ++ ++  +V+++   G LPD  T++ ++   + R+   Q AE
Sbjct: 479 VPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG-FSRQGRMQEAE 537

Query: 464 LLLLELMNKCVEAE 477
           L++L+++ + V  +
Sbjct: 538 LIMLKMIERGVNPD 551



 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/414 (30%), Positives = 218/414 (52%), Gaps = 15/414 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLD---RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           T++ +I+ L    ++  A+ +LD   ++       T +I L  C    R    +DA R+F
Sbjct: 169 TYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC---CRNDNMMDAERIF 225

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M   G  P   S+  ++ +L +   L  A +++R M+  G+ P      +LI   C+N
Sbjct: 226 DEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRN 285

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G M  A K+  EM  +GC  D  TY T++NGLC+   + EA ELF EM  +   P   T
Sbjct: 286 -GVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYT 344

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +T+LING  +  ++ +A+ LFE M  + ++P+V TY++L+DG CKG    +  EL   MI
Sbjct: 345 FTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI 404

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+R  PN ++Y  L+NG C  G + EA  + D M  +G +        I+  +C  G   
Sbjct: 405 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 464

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           +A  FL  M+L GI P+ +T+       NT++ G  K +  +RAF +   M N  +  D 
Sbjct: 465 KADEFLSNMLLKGIVPDGITY-------NTLINGFIKEENMDRAFALVNKMENSGLLPDV 517

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +TY+ ++  F ++G + ++  I+ +++  G  PD  T+++++     +  +++A
Sbjct: 518 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 571



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 187/379 (49%), Gaps = 9/379 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F  + R Y +  +  +    F  +K  G   +  +  ++L  LV+   + LA+  Y+ +
Sbjct: 29  VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 88

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G+Q  V +LN++I ALCKN   ++       +M  +G  PD  TY TLIN  CR G 
Sbjct: 89  VRSGVQVNVYTLNIMINALCKNQ-KIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGL 147

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + EA EL   M  K   P V TY ++INGLC++     A  + +EM   G+ P+  TY+ 
Sbjct: 148 LEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNI 207

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+   C+      A  +   M S+   P++V++S L+  L K G L +A++    MK  G
Sbjct: 208 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 267

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L PD  +Y  +I  FC  G   EA    DEM+  G         L +  +NT++ GLCK 
Sbjct: 268 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCV-------LDVVTYNTILNGLCKE 320

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              + A +++  M  R +  D  T+++LI  + K G+++K+  + + ++     PD  T+
Sbjct: 321 KMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTY 380

Query: 446 SAVMTALWDRRKMRQAAEL 464
           + ++       +M +  EL
Sbjct: 381 NTLIDGFCKGSEMEKVNEL 399



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 166/320 (51%), Gaps = 7/320 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  G+ R     +A++V D+M E GC     +Y T+L  L +E  L  A   +  M
Sbjct: 274 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEM 333

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G+ P   +   LI    K+ G M+ A  +F  M  R   PD  TY TLI+G C+  +
Sbjct: 334 TERGVFPDFYTFTTLINGYSKD-GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSE 392

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +  EL+ +M ++   P  ++Y  LING C    V EA RL++EM  KG E  + T ++
Sbjct: 393 MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNT 452

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G + +A E L  M+ K   P+ +TY+TL+NG  KE  +  A  ++++M+  G
Sbjct: 453 IVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 512

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L PD   Y  I++ F   G+ QEA   + +M+  G+ P+R T++  I  H T      + 
Sbjct: 513 LLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVT------QN 566

Query: 387 DPNRAFQVYLSMRNRSISVD 406
           +   AF+V+  M  R    D
Sbjct: 567 NLKEAFRVHDEMLQRGFVPD 586



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 8/172 (4%)

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N + +  L+    +  KL+E  E    +K +GL         ++     +G    A    
Sbjct: 26  NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 85

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSL 413
            E+V  G+  N  T        N ++  LCK       + +LS M  + +  D +TY++L
Sbjct: 86  QEVVRSGVQVNVYTL-------NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 138

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I  +C++G + ++  ++D +   G  P   T++A++  L    K  +A  +L
Sbjct: 139 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL 190


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/460 (31%), Positives = 229/460 (49%), Gaps = 45/460 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+GF      +  +++ L        AE  + ++ K    +   I  S+  G+ R     
Sbjct: 188 ADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLR 247

Query: 103 DAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           DA++VFD M +E  C P   SY  ++  L E  +L+ AF     M E G QP   +  VL
Sbjct: 248 DALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL 307

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IKALC + G +D AF +F EM  RGC P+ +TY  LI+GLCR GKI EA  + ++M    
Sbjct: 308 IKALC-DRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDG 366

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P+V+TY +LING C+   V  A  L   M  +  +PNV T++ LM+GLC+ G   +A+
Sbjct: 367 IFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAV 426

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ M+     P+IV+Y+ L++GLC+EG +  A ++L  M    L+PD   +  II+ F
Sbjct: 427 HLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAF 486

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR----------- 390
           C  GK   A+ FL  M+  GI+ + +T +       T++ G+C     R           
Sbjct: 487 CKQGKADVASAFLGLMLRKGISLDEVTGT-------TLIDGVCNVGKTRDALFILETLVK 539

Query: 391 --------AFQVYLSMRNRSISVDS-----------------LTYSSLITCFCKKGDIHK 425
                   +  V L M ++   +                   +TY++L+    + GDI  
Sbjct: 540 MRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISG 599

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           S R+++ + L GCLP+   ++ ++  L    ++ +A +LL
Sbjct: 600 SFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLL 639



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/507 (27%), Positives = 243/507 (47%), Gaps = 64/507 (12%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           +K++    +   ++QV+ L R++ D+     ++    + Y       N    L    +VS
Sbjct: 60  LKSLVSHMSPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKL----IVS 115

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-GCEPTPK 121
           +  FR A D++  + +E C   E   L +             +  FD+++E  G      
Sbjct: 116 SGLFRVAHDVIVALIRE-CSRCEKEMLKL-------------ISCFDELREVSGFRLNYP 161

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA------- 174
            Y ++L  L + +   LA+  YR M   G    +     ++ ALCKN  T  A       
Sbjct: 162 CYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKI 221

Query: 175 ---------------------------AFKIFREMPNRG-CTPDSYTYGTLINGLCRLGK 206
                                      A K+F  M   G C P+S +Y  LI+GLC +G+
Sbjct: 222 LKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGR 281

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + EA  L  +M  K C P+  TYT LI  LC    +++A  LF+EM ++G +PNV TY+ 
Sbjct: 282 LEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTV 341

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DGLC+ G   +A  + + M+     P+++TY+ L+NG CK+G++  A E+L  M+ + 
Sbjct: 342 LIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA 401

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
            KP+   + +++   C +GK  +A + L  M+  G++P+ +++       N ++ GLC+ 
Sbjct: 402 CKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSY-------NVLIDGLCRE 454

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              N A+++  SM +  +  D LT++++I  FCK+G    ++  +  ++  G   DE T 
Sbjct: 455 GHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTG 514

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNK 472
           + ++  + +  K R A  L +LE + K
Sbjct: 515 TTLIDGVCNVGKTRDA--LFILETLVK 539



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 224/505 (44%), Gaps = 84/505 (16%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNS-TFSLMISKLV 61
           +K  F   + I ++ +L   R   ++  AL +FD  + E   G    NS ++S++I  L 
Sbjct: 222 LKVGFLLDSHIVTSLLLGFCRG-LNLRDALKVFDLMSRE---GTCAPNSVSYSILIHGLC 277

Query: 62  SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
              +   A  L D++ ++ C  +   +  + +          A  +FD+M   GC+P   
Sbjct: 278 EVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVH 337

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           +Y  ++  L  + +++ A    R M + GI P V + N LI   CK+ G +  AF++   
Sbjct: 338 TYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKD-GRVVPAFELLTV 396

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  R C P+  T+  L+ GLCR+GK Y+A  L K M     SP +V+Y  LI+GLC+   
Sbjct: 397 MEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGH 456

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYS-----------------------------------S 266
           +  A +L   M S  +EP+  T++                                   +
Sbjct: 457 MNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTT 516

Query: 267 LMDGLCKGGCSSQAMELLQMMISKR-----HR---------------------------- 293
           L+DG+C  G +  A+ +L+ ++  R     H                             
Sbjct: 517 LIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLG 576

Query: 294 --PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++VTY+TL++GL + G +  +  +L+ MKL G  P+   Y  II+  C  G+ +EA 
Sbjct: 577 LVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAE 636

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
             L  M   G++PN +T+++ ++ +  V  G  K D  RA +   +M  R   ++   YS
Sbjct: 637 KLLSAMQDSGVSPNHVTYTVMVKGY--VNNG--KLD--RALETVRAMVERGYELNDRIYS 690

Query: 412 SLITCFC--KKGDIHKSARIVDELV 434
           SL+  F   +KG        + EL+
Sbjct: 691 SLLRGFVLSQKGIRETDPECIKELI 715



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/353 (20%), Positives = 147/353 (41%), Gaps = 42/353 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T + +I  + +  + R A  +L+ + K +   T      I     +  +  + 
Sbjct: 506 GISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEE 565

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  K+ + G  P+  +Y T++  L+    +  +FR    M+  G  P V    ++I  
Sbjct: 566 LAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIING 625

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC+  G ++ A K+   M + G +P+  TY  ++ G    GK+  A E  + M  +    
Sbjct: 626 LCQ-FGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYEL 684

Query: 225 TVVTYTSLINGLCQSK---------------SVEEAM-------------RLFEEMR--- 253
               Y+SL+ G   S+               SV E +             RL +E R   
Sbjct: 685 NDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDE 744

Query: 254 SKGV-----EPNVFTYSSL---MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           S G+     +  VF   ++   M+  C     ++ +EL+ +++     P+  ++  ++ G
Sbjct: 745 SNGLVQTILKSGVFLEKAIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQG 804

Query: 306 LCKEGKLQEAVE-ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           L KEG  + A E +++ +   G+   +G+    + C  + G   E  + +D++
Sbjct: 805 LKKEGDTERARELVMELLTSNGVVEKSGVL-PYVECLMETGDCSEVIDLVDQL 856


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 235/434 (54%), Gaps = 10/434 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I+          A +L+D ++ +        + +I  G  +  + L A
Sbjct: 388 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 447

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             V D+M + G  P   +Y  +L      + +  A R +  M   G+ P + S + LI  
Sbjct: 448 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 507

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L KN G +D A K FR+M N G  PD+  Y  LI G CR G + EA ++  EM  + C  
Sbjct: 508 LSKN-GCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXL 566

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +++NGLC+ K + EA  LF EM  +GV P+ +T+++L++G  K G  ++A+ L 
Sbjct: 567 DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLF 626

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           +MMI +  +P++VTY+TL++G CK  ++++  E+ + M  + + P+   YG +I+ +C++
Sbjct: 627 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 686

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           G   EA    DEMV  G     +T        NT+V+G C+  +  +A +   +M  + I
Sbjct: 687 GCVSEAFRLWDEMVEKGFEATIITC-------NTIVKGYCRAGNAVKADEFLSNMLLKGI 739

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D +TY++LI  F K+ ++ ++  +V+++   G LPD  T++ ++   + R+   Q AE
Sbjct: 740 VPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG-FSRQGRMQEAE 798

Query: 464 LLLLELMNKCVEAE 477
           L++L+++ + V  +
Sbjct: 799 LIMLKMIERGVNPD 812



 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/414 (30%), Positives = 218/414 (52%), Gaps = 15/414 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLD---RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           T++ +I+ L    ++  A+ +LD   ++       T +I L  C    R    +DA R+F
Sbjct: 430 TYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC---CRNDNMMDAERIF 486

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M   G  P   S+  ++ +L +   L  A +++R M+  G+ P      +LI   C+N
Sbjct: 487 DEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRN 546

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G M  A K+  EM  +GC  D  TY T++NGLC+   + EA ELF EM  +   P   T
Sbjct: 547 -GVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYT 605

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +T+LING  +  ++ +A+ LFE M  + ++P+V TY++L+DG CKG    +  EL   MI
Sbjct: 606 FTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI 665

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+R  PN ++Y  L+NG C  G + EA  + D M  +G +        I+  +C  G   
Sbjct: 666 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 725

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           +A  FL  M+L GI P+ +T+       NT++ G  K +  +RAF +   M N  +  D 
Sbjct: 726 KADEFLSNMLLKGIVPDGITY-------NTLINGFIKEENMDRAFALVNKMENSGLLPDV 778

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +TY+ ++  F ++G + ++  I+ +++  G  PD  T+++++     +  +++A
Sbjct: 779 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 832



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 211/458 (46%), Gaps = 49/458 (10%)

Query: 36  DSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95
           DS T+   N F+H   +FS MI  LV + +   A+ ++ R+ ++      +I  S+   Y
Sbjct: 223 DSITSNCPN-FKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTY 281

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           G                   C   P  +  ++   V+  +L+     +R ++  G+   +
Sbjct: 282 GN------------------CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSI 323

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N L+  L K  G +D A++I++E+   G   + YT   +IN LC+  KI   K    
Sbjct: 324 NACNSLLGGLVK-VGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLS 382

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           +ME K   P VVTY +LIN  C+   +EEA  L + M  KG++P VFTY+++++GLCK G
Sbjct: 383 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 442

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A  +L  M+     P+  TY+ LL   C+   + +A  I D M  QG+ PD   + 
Sbjct: 443 KYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 502

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS------------------------- 370
            +I      G   +A  +  +M   G+ P+ + ++                         
Sbjct: 503 ALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ 562

Query: 371 ---LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
              L +  +NT++ GLCK    + A +++  M  R +  D  T+++LI  + K G+++K+
Sbjct: 563 GCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKA 622

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             + + ++     PD  T++ ++       +M +  EL
Sbjct: 623 VTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 660



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 166/320 (51%), Gaps = 7/320 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  G+ R     +A++V D+M E GC     +Y T+L  L +E  L  A   +  M
Sbjct: 535 IYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEM 594

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G+ P   +   LI    K+ G M+ A  +F  M  R   PD  TY TLI+G C+  +
Sbjct: 595 TERGVFPDFYTFTTLINGYXKD-GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSE 653

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +  EL+ +M ++   P  ++Y  LING C    V EA RL++EM  KG E  + T ++
Sbjct: 654 MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNT 713

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G + +A E L  M+ K   P+ +TY+TL+NG  KE  +  A  ++++M+  G
Sbjct: 714 IVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 773

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L PD   Y  I++ F   G+ QEA   + +M+  G+ P+R T++  I  H T      + 
Sbjct: 774 LLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVT------QN 827

Query: 387 DPNRAFQVYLSMRNRSISVD 406
           +   AF+V+  M  R    D
Sbjct: 828 NLKEAFRVHDEMLQRGFVPD 847



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 26/239 (10%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +++++I+ L +S+ + +A  +   M  K     V    SL+  L  G C S         
Sbjct: 238 SFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLV--LTYGNCGS--------- 286

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                  N + +  L+    +  KL+E  E    +K +GL         ++     +G  
Sbjct: 287 -------NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWV 339

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVD 406
             A     E+V  G+  N  T        N ++  LCK       + +LS M  + +  D
Sbjct: 340 DLAWEIYQEVVRSGVQVNVYTL-------NIMINALCKNQKIENTKSFLSDMEEKGVFPD 392

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +TY++LI  +C++G + ++  ++D +   G  P   T++A++  L    K  +A  +L
Sbjct: 393 VVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL 451


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 235/434 (54%), Gaps = 10/434 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I+          A +L+D ++ +        + +I  G  +  + L A
Sbjct: 284 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 343

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             V D+M + G  P   +Y  +L      + +  A R +  M   G+ P + S + LI  
Sbjct: 344 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 403

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L KN G +D A K FR+M N G  PD+  Y  LI G CR G + EA ++  EM  + C  
Sbjct: 404 LSKN-GCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVL 462

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +++NGLC+ K + EA  LF EM  +GV P+ +T+++L++G  K G  ++A+ L 
Sbjct: 463 DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLF 522

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           +MMI +  +P++VTY+TL++G CK  ++++  E+ + M  + + P+   YG +I+ +C++
Sbjct: 523 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 582

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           G   EA    DEMV  G     +T        NT+V+G C+  +  +A +   +M  + I
Sbjct: 583 GCVSEAFRLWDEMVEKGFEATIITC-------NTIVKGYCRAGNAVKADEFLSNMLLKGI 635

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D +TY++LI  F K+ ++ ++  +V+++   G LPD  T++ ++   + R+   Q AE
Sbjct: 636 VPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG-FSRQGRMQEAE 694

Query: 464 LLLLELMNKCVEAE 477
           L++L+++ + V  +
Sbjct: 695 LIMLKMIERGVNPD 708



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/414 (30%), Positives = 218/414 (52%), Gaps = 15/414 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLD---RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           T++ +I+ L    ++  A+ +LD   ++       T +I L  C    R    +DA R+F
Sbjct: 326 TYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVEC---CRNDNMMDAERIF 382

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M   G  P   S+  ++ +L +   L  A +++R M+  G+ P      +LI   C+N
Sbjct: 383 DEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRN 442

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G M  A K+  EM  +GC  D  TY T++NGLC+   + EA ELF EM  +   P   T
Sbjct: 443 -GVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYT 501

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +T+LING  +  ++ +A+ LFE M  + ++P+V TY++L+DG CKG    +  EL   MI
Sbjct: 502 FTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI 561

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+R  PN ++Y  L+NG C  G + EA  + D M  +G +        I+  +C  G   
Sbjct: 562 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 621

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           +A  FL  M+L GI P+ +T+       NT++ G  K +  +RAF +   M N  +  D 
Sbjct: 622 KADEFLSNMLLKGIVPDGITY-------NTLINGFIKEENMDRAFALVNKMENSGLLPDV 674

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +TY+ ++  F ++G + ++  I+ +++  G  PD  T+++++     +  +++A
Sbjct: 675 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 728



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 211/458 (46%), Gaps = 49/458 (10%)

Query: 36  DSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95
           DS T+   N F+H   +FS MI  LV + +   A+ ++ R+ ++      +I  S+   Y
Sbjct: 119 DSITSNCPN-FKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTY 177

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           G                   C   P  +  ++   V+  +L+     +R ++  G+   +
Sbjct: 178 GN------------------CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSI 219

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N L+  L K  G +D A++I++E+   G   + YT   +IN LC+  KI   K    
Sbjct: 220 NACNSLLGGLVK-VGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLS 278

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           +ME K   P VVTY +LIN  C+   +EEA  L + M  KG++P VFTY+++++GLCK G
Sbjct: 279 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 338

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A  +L  M+     P+  TY+ LL   C+   + +A  I D M  QG+ PD   + 
Sbjct: 339 KYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 398

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS------------------------- 370
            +I      G   +A  +  +M   G+ P+ + ++                         
Sbjct: 399 ALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ 458

Query: 371 ---LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
              L +  +NT++ GLCK    + A +++  M  R +  D  T+++LI  + K G+++K+
Sbjct: 459 GCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKA 518

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             + + ++     PD  T++ ++       +M +  EL
Sbjct: 519 VTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 556



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 166/320 (51%), Gaps = 7/320 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  G+ R     +A++V D+M E GC     +Y T+L  L +E  L  A   +  M
Sbjct: 431 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEM 490

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G+ P   +   LI    K+ G M+ A  +F  M  R   PD  TY TLI+G C+  +
Sbjct: 491 TERGVFPDFYTFTTLINGYSKD-GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSE 549

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +  EL+ +M ++   P  ++Y  LING C    V EA RL++EM  KG E  + T ++
Sbjct: 550 MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNT 609

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G + +A E L  M+ K   P+ +TY+TL+NG  KE  +  A  ++++M+  G
Sbjct: 610 IVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 669

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L PD   Y  I++ F   G+ QEA   + +M+  G+ P+R T++  I  H T      + 
Sbjct: 670 LLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVT------QN 723

Query: 387 DPNRAFQVYLSMRNRSISVD 406
           +   AF+V+  M  R    D
Sbjct: 724 NLKEAFRVHDEMLQRGFVPD 743



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 26/239 (10%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +++++I+ L +S+ + +A  +   M  K     V    SL+  L  G C S         
Sbjct: 134 SFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLV--LTYGNCGS--------- 182

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                  N + +  L+    +  KL+E  E    +K +GL         ++     +G  
Sbjct: 183 -------NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWV 235

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVD 406
             A     E+V  G+  N  T        N ++  LCK       + +LS M  + +  D
Sbjct: 236 DLAWEIYQEVVRSGVQVNVYTL-------NIMINALCKNQKIENTKSFLSDMEEKGVFPD 288

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +TY++LI  +C++G + ++  ++D +   G  P   T++A++  L    K  +A  +L
Sbjct: 289 VVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL 347


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 232/445 (52%), Gaps = 12/445 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S  +    V  +++ +KD  KAL +F+    E  +GF+H   T+  +I KL     F   
Sbjct: 2   SASLLPKHVAAVLKQQKDPLKALEMFNKVKRE--DGFKHSLLTYKCIIQKLGFHGNFVAM 59

Query: 70  EDLLDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           E++L     +    + E +++   + YGR  +  +A+ VF++M  + CEP+  SY  ++ 
Sbjct: 60  ENVLAETRMDIDNSLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMN 119

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
           ILVE    K A + +  M+ +GI P V +  + IK+ C+      +A ++   M ++GC 
Sbjct: 120 ILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRP-HSALRLLNNMVSQGCQ 178

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
            ++  Y T++ G        EA ELF +M      P V T+  L++ LC+   V+E+ RL
Sbjct: 179 LNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERL 238

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             ++  KG+  N+FT++  + GLC+ G  S AM +L  +I +   P++VTY+TL+ GLCK
Sbjct: 239 LNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCK 298

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
              + EA + L ++   GL+PD   Y  +I  +C +G  Q A   L   +  G  P+  T
Sbjct: 299 NSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFT 358

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +        +++ GLC+ D  +RA  ++ +   + +    + Y+ LI   C++G I ++ 
Sbjct: 359 YC-------SLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQAL 411

Query: 428 RIVDELVLDGCLPDEGTWSAVMTAL 452
           ++++E+  +GC  D  T++ V+  L
Sbjct: 412 QMMNEMSENGCSSDIWTYNLVINGL 436



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 218/448 (48%), Gaps = 51/448 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRV-NKEKCD--ITEDIFLSICRGYGRVHRP 101
           G   D STF+ ++  L    + + +E LL++V  K  C    T +IF+   +G  R    
Sbjct: 211 GIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFI---QGLCRKGML 267

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             AM + D +   G  P   +Y T++  L + + +  A ++   +   G++P   + N L
Sbjct: 268 SGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTL 327

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK  G +  A KI +    +G  PD +TY +LINGLC+  +I  A  LF     K 
Sbjct: 328 IDGYCK-MGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKG 386

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             PTV+ Y  LI GLCQ   + +A+++  EM   G   +++TY+ +++GLCK GC S A 
Sbjct: 387 LKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDAN 446

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS-- 339
            L+   I+K + P++ T++TL++G CK+ K++  ++IL++M   G+ PD   Y  +++  
Sbjct: 447 NLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGL 506

Query: 340 ---------------------------------CFCDIGKYQEAANFLDEMVLGGITPNR 366
                                              C  GK  EA + +DE++  GITP+ 
Sbjct: 507 SKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDT 566

Query: 367 LTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR-SISVDSLTYSSLITCFCKKGDIH 424
           ++++       T++ G     D   A+Q++  M  +  +S  + TY+ +I  F +K D+H
Sbjct: 567 VSFA-------TIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLH 619

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTAL 452
              ++  E+   GC PD  T+  ++   
Sbjct: 620 MGEKLFLEMGAGGCAPDTYTYRVMIDGF 647



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 216/450 (48%), Gaps = 11/450 (2%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           A+ + DS   E   G   D  T++ +I  L   +    AE  L ++     +     + +
Sbjct: 270 AMSMLDSVIRE---GLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNT 326

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  GY ++    +A ++       G  P   +Y +++  L + +++  A   +      G
Sbjct: 327 LIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKG 386

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           ++P V   N+LIK LC+  G +  A ++  EM   GC+ D +TY  +INGLC++G + +A
Sbjct: 387 LKPTVILYNMLIKGLCQ-EGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDA 445

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             L  +   K   P V T+ +LI+G C+   +E  +++  +M S GV P+V TY+S+++G
Sbjct: 446 NNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNG 505

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           L K   +   ME  + M+ K   PN +TY+ L   LCK GK+ EA++++D +  +G+ PD
Sbjct: 506 LSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPD 565

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPN 389
              +  IIS F + G  + A      M        +   S     +N ++     K D +
Sbjct: 566 TVSFATIISGFANNGDLKGAYQLFRRM------GEQYKVSHTTATYNIMINAFAEKLDLH 619

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
              +++L M     + D+ TY  +I  FC  G+     + + E++  G +P   T+  V+
Sbjct: 620 MGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVI 679

Query: 450 TALWDRRKMRQAAELLLLELMNKCVEAEVD 479
             L  + ++ +A +++   + N  V   V+
Sbjct: 680 NCLCVQHRVHEAVDIIHFMVHNGIVPEVVN 709



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 133/275 (48%), Gaps = 42/275 (15%)

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           R GK+ EA ++F+ M+   C P+V++Y +++N L +S   ++A ++F  M++ G+ P+V+
Sbjct: 88  RKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVY 147

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T++  +   C+      A+ LL  M+S+  + N V Y T++ G  +E    EA E+ + M
Sbjct: 148 TFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDM 207

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
              G+ PD   + K++   C  G+ QE+   L++++  G+  N  T+       N  +QG
Sbjct: 208 LRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTF-------NIFIQG 260

Query: 383 LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           LC+                                  KG +  +  ++D ++ +G  PD 
Sbjct: 261 LCR----------------------------------KGMLSGAMSMLDSVIREGLTPDV 286

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
            T++ ++  L     + + AE  L +L+N  +E +
Sbjct: 287 VTYNTLICGLCKNSNVVE-AEKYLHKLVNGGLEPD 320



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 10/233 (4%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFL-SICRGYGR 97
           +++G   D  T++ +++ L  A +     +  + + ++ C    IT +I   S+C+  G+
Sbjct: 488 WSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKA-GK 546

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-IGIQPCVA 156
           V+  LD   + D++   G  P   S+ T+++       LK A++ +R M E   +    A
Sbjct: 547 VNEALD---LVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTA 603

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N++I A  +    +    K+F EM   GC PD+YTY  +I+G C  G      +   E
Sbjct: 604 TYNIMINAFAEKL-DLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLE 662

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           M  K   P++ T+  +IN LC    V EA+ +   M   G+ P V    S  D
Sbjct: 663 MIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPEVVNSISEAD 715



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 96/204 (47%), Gaps = 8/204 (3%)

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
            Y   M    + G   +A+++ + M      P++++Y+ ++N L + G  ++A ++  RM
Sbjct: 78  VYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRM 137

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           K  G+ PD   +   I  FC   +   A   L+ MV  G   N + +        TVV G
Sbjct: 138 KNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYC-------TVVAG 190

Query: 383 LCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
             + +    A++++  M    I  D  T++ L+   CKKG++ +S R++++++  G   +
Sbjct: 191 FYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSN 250

Query: 442 EGTWSAVMTALWDRRKMRQAAELL 465
             T++  +  L  +  +  A  +L
Sbjct: 251 LFTFNIFIQGLCRKGMLSGAMSML 274



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ-GLCKTDPNR 390
           G+Y   +  +   GK QEA +  + M      P+ L+++    I N +V+ G  K    +
Sbjct: 77  GVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYN---AIMNILVESGYFK----Q 129

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A +V+L M+N  I  D  T++  I  FC+    H + R+++ +V  GC  +   +  V+ 
Sbjct: 130 AHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVA 189

Query: 451 ALWDRRKMRQAAELL 465
             ++     +A EL 
Sbjct: 190 GFYEENYRVEAYELF 204


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 205/367 (55%), Gaps = 15/367 (4%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            +R F +M+  GC P   +Y T++    +  +   AF F R M   G++P + + N++I 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC++ G +    ++  EM  +G  PD  TY TL+NG C+ G  ++A  L  EM     S
Sbjct: 62  GLCRD-GRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTYTSLIN +C++ ++  AM  F++M  +G+ PN  TY+++++G  + G   +A  +
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M      P+IVTY+ L+NG C  G+++EA+ +L  M  +G+ PD   Y  IIS F  
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFAR 240

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMR 399
             +   A     EM+   + P+ +T+S       +++QGLC+    T+    FQ  L+++
Sbjct: 241 NQELDRAFQMKVEMIGKSVLPDAVTYS-------SLIQGLCEQRRLTEACDMFQEMLTIK 293

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
              +  D  TY++LI  +CK+GD++K+  + DE++  G LPD  T++ ++  L  + + +
Sbjct: 294 ---LPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSK 350

Query: 460 QAAELLL 466
           +A  LLL
Sbjct: 351 EARRLLL 357



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 210/411 (51%), Gaps = 10/411 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+++I+ L    + +   ++L  ++++     E  + ++  GY +      A+ +  +M
Sbjct: 55  TFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEM 114

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P   +Y +++  + +   L  A  F+  M   G+ P   +   +I    +  G 
Sbjct: 115 VRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQ-QGL 173

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A+++  EM   G  P   TY  LING C LG++ EA  L ++M  K   P VV+Y++
Sbjct: 174 LDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYST 233

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G  +++ ++ A ++  EM  K V P+  TYSSL+ GLC+    ++A ++ Q M++ +
Sbjct: 234 IISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIK 293

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+  TY+TL+N  CKEG L +A+ + D M  +G  PDA  Y  +I+      + +EA 
Sbjct: 294 LPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEAR 353

Query: 352 NFLDEMVLGGITPNRLTWS--------LHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
             L ++      P+ +T++        +  +    +V+G C K   + A QV+ SM N++
Sbjct: 354 RLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKN 413

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
              +   Y+ +I   C+ G++ K+ ++  E+V    +P   T  A++ AL+
Sbjct: 414 HKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALF 464



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 176/357 (49%), Gaps = 9/357 (2%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           GY ++ R  +A      M   G EP   ++  ++  L  + +LK        M   G  P
Sbjct: 27  GYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVP 86

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
              + N L+   CK  G    A  +  EM   G +P+  TY +LIN +C+ G +  A E 
Sbjct: 87  DEVTYNTLVNGYCK-EGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEF 145

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F +M  +   P   TYT++ING  Q   ++EA R+  EM   G  P++ TY++L++G C 
Sbjct: 146 FDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCV 205

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A+ LLQ M+ K   P++V+YST+++G  +  +L  A ++   M  + + PDA  
Sbjct: 206 LGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVT 265

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAF 392
           Y  +I   C+  +  EA +   EM+   + P+  T++       T++   CK  D N+A 
Sbjct: 266 YSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYT-------TLINAYCKEGDLNKAL 318

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            ++  M  +    D++TY+ LI    K+    ++ R++ +L  D  +P   T++ ++
Sbjct: 319 HLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLI 375



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 198/436 (45%), Gaps = 27/436 (6%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E + ++ALV+         NG   +  T++ +I+ +  A     A +  D+++       
Sbjct: 101 EGNFHQALVLHAEMVR---NGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPN 157

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           E  + +I  G+ +     +A RV ++M   G  P+  +Y  ++       +++ A    +
Sbjct: 158 ERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQ 217

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   G+ P V S + +I    +N   +D AF++  EM  +   PD+ TY +LI GLC  
Sbjct: 218 DMVGKGVLPDVVSYSTIISGFARNQ-ELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQ 276

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            ++ EA ++F+EM T    P   TYT+LIN  C+   + +A+ L +EM  KG  P+  TY
Sbjct: 277 RRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTY 336

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN---------------GLCKE 309
           + L++GL K   S +A  LL  +      P+ VTY+TL+                G C +
Sbjct: 337 NVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMK 396

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G + EA ++ + M  +  KP+  +Y  II   C IG   +A     EMV     P+ +T 
Sbjct: 397 GLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTV 456

Query: 370 SLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV-DSLTYSSLITCFCKKGDIHKSAR 428
                    +V+ L     +      +    RS  + D+     L+    K+G++     
Sbjct: 457 L-------ALVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVLVEINQKEGNMDMVFN 509

Query: 429 IVDELVLDGCLPDEGT 444
           ++ E+  DG +P  GT
Sbjct: 510 LLTEMAKDGLIPSTGT 525


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 148/507 (29%), Positives = 251/507 (49%), Gaps = 38/507 (7%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           +K + +   +IT  Q+ +L+    DV+ ++ IF  A ++   G+ H    + ++I KL +
Sbjct: 57  LKELRRSFNQITPFQLCKLLLLPLDVSTSMAIFQWAGSQ--KGYCHTFDVYHVLIDKLGA 114

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPK 121
           A +F+  + LL ++ +E     E +F+ I + YGR + P  A R+   MK  + CEPT K
Sbjct: 115 AKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYCCEPTFK 174

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           SY  VL ILV  N   +A   +  M   G+ P V +  V++KALC     +D A  + R+
Sbjct: 175 SYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCM-VNEVDNACSLLRD 233

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M   GC P+S  Y TLI+ L +  ++ EA +L +EM    C P V T+  +I GLC+   
Sbjct: 234 MTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNR 293

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           + E  +L + M  +G  PN  TY  LM+GLC+ G   +A    Q++++K   PN V ++ 
Sbjct: 294 IHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEA----QVLLNKVPTPNDVHFTI 349

Query: 302 LLNGLCKEGKLQEAVEIL-DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           L+NG  K G+L EA   L D+M   G +PD   +  +I   C  G    A + +++M   
Sbjct: 350 LINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSAN 409

Query: 361 GITPNRLTWS----------------------------LHIRIHNTVVQGLCKTDP-NRA 391
           G TPN +T++                            L+I  +N +++ LCK     +A
Sbjct: 410 GCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKA 469

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             +   M ++    D  T+++LI   CK      +  +  +++LDG + +  T++ ++ A
Sbjct: 470 LDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHA 529

Query: 452 LWDRRKMRQAAELLLLELMNKCVEAEV 478
                 +++A +L+   L   C   E+
Sbjct: 530 FLRGGAIQEALKLVNDMLFRGCPLDEI 556



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 228/448 (50%), Gaps = 30/448 (6%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKCDIT 84
           VN+AL + +     +  G   D  TF+ +I  L   N+      L+DR+        DIT
Sbjct: 259 VNEALKLLEEM---FLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDIT 315

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS--YITVLAILVEENQLKLAFRF 142
             + ++   G  RV +  +A  + +K+      PTP    +  ++   V+  +L  A  F
Sbjct: 316 YGVLMN---GLCRVGKVDEAQVLLNKV------PTPNDVHFTILINGYVKSGRLDEANAF 366

Query: 143 -YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            Y  M + G +P V + N LI  LCK  G M +A  +  +M   GCTP+  TY TL++G 
Sbjct: 367 LYDKMIKNGCRPDVFTFNTLIHGLCK-KGLMGSAVDMVNDMSANGCTPNLITYTTLLDGF 425

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+  ++ EA  +  EM  K     ++ Y  L+  LC++  V +A+ +  EM  KG +P++
Sbjct: 426 CKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDI 485

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
           FT+++L+ GLCK      A+ L + M+      N VTY+TL++   + G +QEA+++++ 
Sbjct: 486 FTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVND 545

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  +G   D   Y  +I  FC +G  ++A    DEMV   + P+ ++ +L       ++ 
Sbjct: 546 MLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNL-------LIN 598

Query: 382 GLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLC+      A ++   M +R ++ D +TY+SLI   CK G+I ++  + ++L  +G  P
Sbjct: 599 GLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQP 658

Query: 441 DEGTWSAVMTALWD-RRKMRQAAELLLL 467
           D  T++ ++   W  R  M   A LLLL
Sbjct: 659 DAITYNTLIC--WHCRAGMFDDAYLLLL 684



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 185/385 (48%), Gaps = 44/385 (11%)

Query: 53  FSLMISKLVSANQFRPAEDLL-DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           F+++I+  V + +   A   L D++ K  C      F ++  G  +      A+ + + M
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM 406

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P   +Y T+L    ++NQL+ A      M   G +  +   NVL++ALCKN G 
Sbjct: 407 SANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKN-GK 465

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL--------------------------- 204
           +  A  +  EM ++GC PD +T+ TLI GLC++                           
Sbjct: 466 VPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNT 525

Query: 205 --------GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
                   G I EA +L  +M  + C    +TY  LI   C+  + E+A+ LF+EM  K 
Sbjct: 526 LIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKD 585

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           + P+  + + L++GLC+ G    A+ELL+ MI +   P++VTY++L+NGLCK G ++EA 
Sbjct: 586 LVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAF 645

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL----- 371
            + ++++ +G++PDA  Y  +I   C  G + +A   L   V     PN +TW +     
Sbjct: 646 NLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNF 705

Query: 372 --HIRIHNTVVQGLCKTDPNRAFQV 394
              I   N +  G  K  P+   QV
Sbjct: 706 IKEIGKENGISFGTAKVIPSICIQV 730


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 243/473 (51%), Gaps = 14/473 (2%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W  ++   +++ +I  +++++ AL IF  A   +  GF H+  T+  ++ KL  A  F P
Sbjct: 43  WPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHP-GFTHNYDTYHSILFKLSRARAFDP 101

Query: 69  AEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
            E L+  +      I   E++F+ + R YG   R   +MR+F ++ +FG + + +S  T+
Sbjct: 102 VESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTL 161

Query: 127 LAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           L +L++  +  L    +++ +E  GI P + + N+L+KALCK +  +++A+K+  E+P+ 
Sbjct: 162 LNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKN-DIESAYKVLDEIPSM 220

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P+  TY T++ G    G +  AK + +EM  +   P   TYT L++G C+     EA
Sbjct: 221 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEA 280

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             + ++M    +EPN  TY  ++  LCK   S +A  +   M+ +   P+      +++ 
Sbjct: 281 ATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDA 340

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LC++ K+ EA  +  +M      PD  L   +I   C  G+  EA    DE   G I P+
Sbjct: 341 LCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSI-PS 399

Query: 366 RLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            LT       +NT++ G+C K +   A +++  M  R    ++ TY+ LI    K G++ 
Sbjct: 400 LLT-------YNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVK 452

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           +  R+++E++  GC P++ T+  +   L    K   A +++ + +MN  V+ E
Sbjct: 453 EGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKVDKE 505



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 162/345 (46%), Gaps = 8/345 (2%)

Query: 35  FDSATAEYAN-----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           FD   A + N     G   +  T +L++  L   N    A  +LD +           + 
Sbjct: 171 FDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYT 230

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           +I  GY        A RV ++M + G  P   +Y  ++    +  +   A      M + 
Sbjct: 231 TILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKN 290

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            I+P   +  V+I+ALCK   + +A   +F EM  R   PDS     +I+ LC   K+ E
Sbjct: 291 EIEPNEVTYGVMIRALCKEKKSGEAR-NMFDEMLERSFMPDSSLCCKVIDALCEDHKVDE 349

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  L+++M    C P     ++LI+ LC+   V EA +LF+E   KG  P++ TY++L+ 
Sbjct: 350 ACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEF-EKGSIPSLLTYNTLIA 408

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G+C+ G  ++A  L   M  ++ +PN  TY+ L+ GL K G ++E V +L+ M   G  P
Sbjct: 409 GMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFP 468

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           +   +  +      +GK ++A   +   V+ G   ++ +W L ++
Sbjct: 469 NKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKV-DKESWELFLK 512


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 225/422 (53%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H   + +++I+ L   N    A  +  ++ K         F ++  G     +   A
Sbjct: 123 GVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVA 182

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + ++++M   G EP   SY T++  L       +A   ++ M + G +P V + N +I +
Sbjct: 183 VELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDS 242

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+    DA      EM  RG  PD+ TY ++++GLC LG++ EA  LFK ME   C P
Sbjct: 243 LCKDRLVNDA-MDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKP 301

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY  +I+ L + + V +A     EM  +G+ P+V TY++++ GLC  G  ++A+ L 
Sbjct: 302 DVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLF 361

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K  +P++V Y+T+++ LCK+  + +A+E L  M  +G+ P+A  Y  I+  FC++
Sbjct: 362 KKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNL 421

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSI 403
           G+  EA     EMV   + PN LT+S+       +V GLC+    + A  V+ +M  + +
Sbjct: 422 GQLDEATQLFKEMVGRNVMPNTLTFSI-------LVDGLCQEGMVSEARWVFETMTEKGV 474

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TY++L+  +C +  ++++ ++ + +V  GC PD  +++ ++    + R+M +A  
Sbjct: 475 EPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKA 534

Query: 464 LL 465
           LL
Sbjct: 535 LL 536



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 202/371 (54%), Gaps = 9/371 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V+ KM + G +P   ++ T++  +  E ++K+A   Y  M   G +P V S N LI 
Sbjct: 147 AVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLIN 206

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC NSG  + A  +F++M   GC P+  TY T+I+ LC+   + +A +   EM  +   
Sbjct: 207 GLC-NSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIP 265

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  +TY S+++GLC    + EA RLF+ M   G +P+V TY+ ++D L K    + A + 
Sbjct: 266 PDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADF 325

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M+ +   P++VTY+T+L+GLC  G+L EA+ +  +M+ +G KPD   Y  II   C 
Sbjct: 326 LSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCK 385

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
                +A  FL EMV  GI PN +T+S       T++ G C     + A Q++  M  R+
Sbjct: 386 DRLVNDAMEFLSEMVDRGIPPNAVTYS-------TILHGFCNLGQLDEATQLFKEMVGRN 438

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  ++LT+S L+   C++G + ++  + + +   G  P+  T++A+M     R KM +A 
Sbjct: 439 VMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 463 ELLLLELMNKC 473
           ++  + +   C
Sbjct: 499 KVFEIMVGKGC 509



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 227/454 (50%), Gaps = 12/454 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +  ++ VN A+   D  +     G   D  T++ ++  L    Q   A  L
Sbjct: 234 VTYNTIIDSLCKDRLVNDAM---DFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRL 290

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
             R+ +  C      +  I     +     DA     +M + G  P   +Y T+L  L  
Sbjct: 291 FKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCY 350

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             QL  A R ++ M + G +P V + N +I +LCK+    DA  +   EM +RG  P++ 
Sbjct: 351 LGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDA-MEFLSEMVDRGIPPNAV 409

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY T+++G C LG++ EA +LFKEM  +   P  +T++ L++GLCQ   V EA  +FE M
Sbjct: 410 TYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETM 469

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             KGVEPN++TY++LM+G C     ++A ++ ++M+ K   P++ +Y+ L+NG C   ++
Sbjct: 470 TEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRM 529

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            +A  +L +M ++ L P+   Y  I+   C +G+  +A     +M   G+ P  +T+S+ 
Sbjct: 530 DKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSI- 588

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
                 ++ GLCK    + A +++ SM+ + +  D + Y+ LI      G +  +  +  
Sbjct: 589 ------LLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFS 642

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +L  DG  P   T++ ++  L       +A EL 
Sbjct: 643 KLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 188/364 (51%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F +M      P+   +   L  + +  Q          M   G+   V SLN+LI
Sbjct: 76  DALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILI 135

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+    +D A  ++ +M   G  PD  T+ TLING+C  GKI  A EL+ EM     
Sbjct: 136 NCLCR-LNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGH 194

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V++Y +LINGLC S +   A+ +F++M   G +PNV TY++++D LCK    + AM+
Sbjct: 195 EPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMD 254

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L  M+ +   P+ +TY+++++GLC  G+L EA  +  RM+  G KPD   Y  II    
Sbjct: 255 FLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLY 314

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
                 +AA+FL EMV  GI P+ +T++       T++ GLC     N A +++  M  +
Sbjct: 315 KDRLVNDAADFLSEMVDQGIPPDVVTYT-------TILHGLCYLGQLNEAIRLFKKMEQK 367

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D + Y+++I   CK   ++ +   + E+V  G  P+  T+S ++    +  ++ +A
Sbjct: 368 GCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEA 427

Query: 462 AELL 465
            +L 
Sbjct: 428 TQLF 431



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 11/328 (3%)

Query: 142 FYRHMREIGI---QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           F+RH          P +   N    +   N+ ++D A   F  M      P    +G  +
Sbjct: 41  FHRHHITTSTFTKNPSLPKKNGGFASNSSNTISVDDALASFYRMARMNPRPSIVEFGKFL 100

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
             + ++ +      L  +M+    + TV +   LIN LC+   V+ A+ ++ +M   G++
Sbjct: 101 GSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQ 160

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P+V T+++L++G+C  G    A+EL   M+   H P++++Y+TL+NGLC  G    AV +
Sbjct: 161 PDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHV 220

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
             +M+  G KP+   Y  II   C      +A +FL EMV  GI P+ +T+       N+
Sbjct: 221 FKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITY-------NS 273

Query: 379 VVQGL-CKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           +V GL C    N A +++  M       D +TY+ +I    K   ++ +A  + E+V  G
Sbjct: 274 IVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQG 333

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD  T++ ++  L    ++ +A  L 
Sbjct: 334 IPPDVVTYTTILHGLCYLGQLNEAIRLF 361



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 1/222 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  VF+ M E G EP   +Y  ++       ++  A + +  M   G  P + S N+LI
Sbjct: 461 EARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILI 520

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C NS  MD A  +  +M  +  TP++ TY T++ GLC +G++ +A+ELFK+M +   
Sbjct: 521 NGYC-NSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGM 579

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT++TY+ L+NGLC+   ++EA++LF+ M+ K +EP++  Y+ L++G+  GG    A  
Sbjct: 580 LPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKG 639

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           L   + +   +P   TY+ ++ GL KEG   EA E+  + K+
Sbjct: 640 LFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKM 681



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 117/241 (48%), Gaps = 1/241 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TFS+++  L        A  + + + ++  +     + ++  GY    +  +A +VF+ M
Sbjct: 445 TFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIM 504

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P   SY  ++       ++  A      M    + P   + N ++K LC     
Sbjct: 505 VGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRL 564

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +DA  ++F++M + G  P   TY  L+NGLC+ G + EA +LFK M+ K   P ++ YT 
Sbjct: 565 LDAQ-ELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTI 623

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI G+     +E A  LF ++ + G++P   TY+ ++ GL K G S +A EL +     +
Sbjct: 624 LIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMK 683

Query: 292 H 292
           H
Sbjct: 684 H 684


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/469 (28%), Positives = 243/469 (51%), Gaps = 25/469 (5%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S  +    V  +++ + D  KAL +F+SA +E  +GF+H  ST+  ++ KL    +F   
Sbjct: 2   SRTLLPKHVAAVVKIQTDPLKALEMFNSAKSE--DGFKHTASTYKCIVQKLGHHGEFEEM 59

Query: 70  EDLLDRVNKEKCD-ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           E LL  + +   + + E  ++   + YGR  +  +A+  F++M  + C+P+  S+  ++ 
Sbjct: 60  EKLLSEMRENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMN 119

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
           ILVE      A + Y  MR+ G+Q  V +  + IK+ CK +    AA ++ R MP  GC 
Sbjct: 120 ILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPY-AALRLLRNMPELGCD 178

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
            ++  Y T++ GL   G+   A+ELF EM  +   P VV +  L++ LC+   V E+ RL
Sbjct: 179 SNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERL 238

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM---------ELLQMMISKRHRPNIVTY 299
             ++  +GV PN+FT++  + GLC+ G   +A+         E L+ M++    P+ +TY
Sbjct: 239 LGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTY 298

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           +++++G CK+G +Q+A  +L     +G KPD   Y  +I+ FC  G    A     + + 
Sbjct: 299 NSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLG 358

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTD---PNRAFQVYLSMRNRSISVDSLTYSSLITC 416
            G+ P+       I ++NT+++GL +     P  A Q+   M       +  TY+ +I  
Sbjct: 359 KGLRPS-------IVLYNTLIKGLSQQGLILP--ALQLMNEMAENGCLPNIWTYNLVING 409

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            CK G +  ++ +VD+ +  GC PD  T++ ++     + K+  A E++
Sbjct: 410 LCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMV 458



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 210/424 (49%), Gaps = 8/424 (1%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116
           + + V  ++   AE+ L ++     +  +  + SI  GY +     DA RV       G 
Sbjct: 267 LDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGF 326

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
           +P   +Y +++    ++     A   ++     G++P +   N LIK L +  G +  A 
Sbjct: 327 KPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQ-QGLILPAL 385

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           ++  EM   GC P+ +TY  +INGLC++G + +A  L  +   K C P + TY +LI+G 
Sbjct: 386 QLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGY 445

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+   ++ A  +   M S+G+ P+V TY++L++GLCK G S + ME+ + M  K   PNI
Sbjct: 446 CKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNI 505

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           +TY+ +++ LCK  K+ EAV++L  MK +GLKPD   +G + + FC IG    A      
Sbjct: 506 ITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRR 565

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
           M        +         +N +V     + + N A +++  M+N     D+ TY  +I 
Sbjct: 566 M------EKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVID 619

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
            FCK G+I +  + + E +    +P   T+  V+  L  + K+ +A  ++ L L    V 
Sbjct: 620 GFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVP 679

Query: 476 AEVD 479
             V+
Sbjct: 680 ETVN 683



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 149/283 (52%), Gaps = 8/283 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLDAMRVFD 109
           T++L+I+ L        A  L+D    + C    DIF   ++  GY +  +   A  + +
Sbjct: 402 TYNLVINGLCKMGCVSDASHLVDDAIAKGC--PPDIFTYNTLIDGYCKQLKLDSATEMVN 459

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M   G  P   +Y T+L  L +  + +     ++ M E G  P + + N+++ +LCK +
Sbjct: 460 RMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCK-A 518

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK--ACSPTVV 227
             ++ A  +  EM ++G  PD  ++GTL  G C++G I  A +LF+ ME +   C  T  
Sbjct: 519 KKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCH-TTA 577

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY  +++   +  ++  AM+LF  M++ G +P+ +TY  ++DG CK G  +Q  + L   
Sbjct: 578 TYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLEN 637

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           + KR  P++ T+  +LN LC + K+ EAV I+  M  +G+ P+
Sbjct: 638 MEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVPE 680


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 208/373 (55%), Gaps = 8/373 (2%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           GY +  R  +A R++++M   G EP+  +Y ++L    +E ++K A   ++ M E G +P
Sbjct: 52  GYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEP 111

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V + + +I  LCK     +A   +F +M  RGC+ ++  Y  LINGLC+   I  A +L
Sbjct: 112 DVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKL 171

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            +EM +K   P  +TY ++++GLC+   V EA + F+ M S+G  P+V  Y+ L+D L K
Sbjct: 172 LEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYK 231

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G + +AM+L + +I+K + P+ VTY+++L GL ++  + EA E+  +M   G  P+   
Sbjct: 232 EGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGAT 291

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAF 392
           Y  ++S  C   K  +A   L+EM   G  P+ +T+       N ++ GLCKT+  ++A 
Sbjct: 292 YSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTY-------NILLDGLCKTNLVDKAH 344

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +++ +M +   + D ++YS ++   CK   +H +  + D ++    +PD  T++ +M  L
Sbjct: 345 ELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGL 404

Query: 453 WDRRKMRQAAELL 465
               K+ +A +LL
Sbjct: 405 CKAGKLDEAKDLL 417



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 218/423 (51%), Gaps = 10/423 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D   ++++I       +   A  L + +     + +   + S+   + +  +  +
Sbjct: 37  NGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKE 96

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH-MREIGIQPCVASLNVLI 162
           AM +F  M E G EP   +Y T+++ L +  ++  A     H M E G      + N LI
Sbjct: 97  AMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALI 156

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK+   ++ A+K+  EM ++G  PD+ TY T+++GLCR+GK+ EAK+ F  M ++  
Sbjct: 157 NGLCKDE-NIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGY 215

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP VV Y  L++ L +    +EAM+LF+++ +KG  P+  TY+S++ GL +     +A E
Sbjct: 216 SPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEE 275

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M++    PN  TYS +L+G C+  K+ +A ++L+ M   G  PD   Y  ++   C
Sbjct: 276 MFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLC 335

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
                 +A      MV  G  P+ +++S+       V+ GLCKT+  + A  ++  M  R
Sbjct: 336 KTNLVDKAHELFSTMVDNGCAPDIVSYSV-------VLNGLCKTNKVHDARVLFDRMIER 388

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D +T++ L+   CK G + ++  ++D++   GC PD   ++ +M  L  + +  QA
Sbjct: 389 KLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQA 448

Query: 462 AEL 464
             L
Sbjct: 449 DRL 451



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 194/361 (53%), Gaps = 10/361 (2%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C P   ++  VL    ++ +L+  ++ +  M + GI P     N+LI    K  G +D A
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAK-KGRVDEA 62

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            +++ EM + G  P  YTY +L+N  C+  K+ EA ELFK M  K   P VVTY+++I+G
Sbjct: 63  NRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISG 122

Query: 236 LCQSKSVEEAMR-LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           LC++  V EA+  LF +M  +G   N   Y++L++GLCK     +A +LL+ M SK + P
Sbjct: 123 LCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVP 182

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           + +TY+T+L+GLC+ GK+ EA +  D M  +G  PD   Y  ++      GK  EA    
Sbjct: 183 DNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLF 242

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
            +++  G  P+ +T+       N+++ GL  K++ + A +++  M     + +  TYS +
Sbjct: 243 KDVIAKGYMPDTVTY-------NSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIV 295

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++  C+   +  + ++++E+   G +PD  T++ ++  L     + +A EL    + N C
Sbjct: 296 LSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGC 355

Query: 474 V 474
            
Sbjct: 356 A 356



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 199/397 (50%), Gaps = 25/397 (6%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA-EDL 72
           T   +L     E  + +A+ +F +   +   GF  D  T+S +IS L    +   A E L
Sbjct: 80  TYNSLLNAFCKETKMKEAMELFKTMAEK---GFEPDVVTYSTIISGLCKTGKVTEALEML 136

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
             ++ +  C      + ++  G  +      A ++ ++M   G  P   +Y T+L+ L  
Sbjct: 137 FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCR 196

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             ++  A +F+  M   G  P V + N L+ AL K  G  D A K+F+++  +G  PD+ 
Sbjct: 197 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYK-EGKTDEAMKLFKDVIAKGYMPDTV 255

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +++ GL R   + EA+E+FK+M    C+P   TY+ +++G C++K V++A ++ EEM
Sbjct: 256 TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEM 315

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
              G  P+V TY+ L+DGLCK     +A EL   M+     P+IV+YS +LNGLCK  K+
Sbjct: 316 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 375

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            +A  + DRM  + L PD   +  ++   C  GK  EA + LD+M   G  P+ + +   
Sbjct: 376 HDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAY--- 432

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT 409
               NT++ GL K             + R I  D LT
Sbjct: 433 ----NTLMNGLRK-------------QGRHIQADRLT 452



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 162/283 (57%), Gaps = 9/283 (3%)

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           R C+P+ YT+  ++   C+ GK+ +  +LF++M     SP  + Y  LI+G  +   V+E
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDE 61

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A RL+EEM S G+EP+++TY+SL++  CK     +AMEL + M  K   P++VTYST+++
Sbjct: 62  ANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 305 GLCKEGKLQEAVEIL-DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           GLCK GK+ EA+E+L  +M  +G   +   Y  +I+  C     + A   L+EM   G  
Sbjct: 122 GLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYV 181

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           P+ +T+       NT++ GLC+    + A Q + SM +R  S D + Y+ L+    K+G 
Sbjct: 182 PDNITY-------NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 234

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             ++ ++  +++  G +PD  T+++++  L  +  M +A E+ 
Sbjct: 235 TDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMF 277



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 148/288 (51%), Gaps = 1/288 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G+  DN T++ ++S L    +   A+   D +           +  +     +  +  
Sbjct: 177 SKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTD 236

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM++F  +   G  P   +Y ++L  L  ++ +  A   ++ M   G  P  A+ ++++
Sbjct: 237 EAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVL 296

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ +  +D A K+  EM   G  PD  TY  L++GLC+   + +A ELF  M    C
Sbjct: 297 SGHCR-AKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGC 355

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P +V+Y+ ++NGLC++  V +A  LF+ M  + + P+V T++ LMDGLCK G   +A +
Sbjct: 356 APDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKD 415

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LL  M      P+ V Y+TL+NGL K+G+  +A  +   MK +G   D
Sbjct: 416 LLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 4/245 (1%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           +L  +  E   ++A+ +F    A+   G+  D  T++ ++  L   +    AE++  ++ 
Sbjct: 225 LLDALYKEGKTDEAMKLFKDVIAK---GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV 281

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
              C      +  +  G+ R  +  DA +V ++M + G  P   +Y  +L  L + N + 
Sbjct: 282 ASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVD 341

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A   +  M + G  P + S +V++  LCK +   DA   +F  M  R   PD  T+  L
Sbjct: 342 KAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARV-LFDRMIERKLVPDVVTFNIL 400

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++GLC+ GK+ EAK+L  +M    C+P  V Y +L+NGL +     +A RL + M+ KG 
Sbjct: 401 MDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGF 460

Query: 258 EPNVF 262
             + F
Sbjct: 461 LSDCF 465



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 41/183 (22%)

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN  T+  +L   CK+GKL++  ++ ++M   G+ PD   Y  +I  +   G+  EA   
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
            +EMV  G+ P+                            +Y             TY+SL
Sbjct: 66  YEEMVSVGLEPS----------------------------IY-------------TYNSL 84

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           +  FCK+  + ++  +   +   G  PD  T+S +++ L    K+ +A E+L  +++ + 
Sbjct: 85  LNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERG 144

Query: 474 VEA 476
             A
Sbjct: 145 CSA 147


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/415 (31%), Positives = 203/415 (48%), Gaps = 50/415 (12%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTP---------------KSYITV--------- 126
            C  Y  +H   DA+  F+++   G  P P               K Y TV         
Sbjct: 40  FCSNYNNLHSVADAVASFNQL--LGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDL 97

Query: 127 ---------LAILVE------ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
                    L IL+        + +  AF     M ++G+QP   +   L+  LC  +  
Sbjct: 98  SNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKI 157

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +DA  K+F E+   G  P   TY T+I GLC++G    A +L K+ME K C P VV Y +
Sbjct: 158 IDAV-KLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNT 216

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+ LC+ +   EAM  F EM  +G+ PNV TYSS++ G C  G  ++A  L + MI + 
Sbjct: 217 VIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRN 276

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN VT++ L++GLCKEG + EA  + + M   G++PDA  Y  ++  +C   +  EA 
Sbjct: 277 VMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQ 336

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
              D MV  G  P+       +R++N ++ G CK+   N A  +   M +R ++ D++TY
Sbjct: 337 KLFDIMVGKGFAPS-------VRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTY 389

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           S+L+  FC+ G    + ++  E+   G LPD  T+S ++  L     + +A  LL
Sbjct: 390 STLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLL 444



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 219/432 (50%), Gaps = 9/432 (2%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           F +    +  G +  + TF  +++ L S  +   A  L D + K     +   + +I +G
Sbjct: 126 FSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKG 185

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
             ++    +A+++  KM+E GC+P   +Y TV+  L ++ +   A  F+  M + GI P 
Sbjct: 186 LCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPN 245

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           V + + ++   C N G ++ A  +F++M  R   P++ T+  L++GLC+ G I EA+ +F
Sbjct: 246 VVTYSSILHGFC-NLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVF 304

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           + M      P   TY++L++G C    ++EA +LF+ M  KG  P+V  Y+ L++G CK 
Sbjct: 305 EMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKS 364

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
              ++A  LL  M  +   P+ VTYSTL+ G C+ G+ Q A ++   M   GL PD+  Y
Sbjct: 365 RRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITY 424

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQ 393
             ++   C  G   EA   L  M    I P       HI I+N ++QG+C       A +
Sbjct: 425 SILLDGLCKHGHLDEAFRLLKAMQESKIEP-------HICIYNILIQGMCNFGKLEAARE 477

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++ ++  + I    +TY+ +I+   K+G  +++  +  ++V++GCLP+  T++  +    
Sbjct: 478 LFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFL 537

Query: 454 DRRKMRQAAELL 465
                  A  L+
Sbjct: 538 RNGDPSNAVRLI 549



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 219/469 (46%), Gaps = 67/469 (14%)

Query: 47  RHDNSTFSLMISKLVSAN--QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           R +  T +++I+ L  +N      A   L ++ K     T   F ++  G     + +DA
Sbjct: 101 RPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDA 160

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++FD++ + G  P+  +Y T++  L +      A +  + M E G +P V + N +I +
Sbjct: 161 VKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDS 220

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+    +A +  F EM ++G  P+  TY ++++G C LG++ EA  LFK+M  +   P
Sbjct: 221 LCKDRRANEAMY-FFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMP 279

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT+T L++GLC+   + EA R+FE M   GVEP+ +TYS+LMDG C      +A +L 
Sbjct: 280 NTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLF 339

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M+ K   P++  Y+ L+NG CK  +L EA  +L  M  + L PD   Y  ++  FC  
Sbjct: 340 DIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQA 399

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRIH 376
           G+ Q A     EM   G+ P+ +T+S+                            HI I+
Sbjct: 400 GRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIY 459

Query: 377 NTVVQGLCK------------------TDP------------------NRAFQVYLSMRN 400
           N ++QG+C                     P                  N A +++  M  
Sbjct: 460 NILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVV 519

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
                +S TY+  I  F + GD   + R+++E+V  G   D  T+  ++
Sbjct: 520 NGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 142/316 (44%), Gaps = 45/316 (14%)

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           +P S T G   +    L  + +A   F ++      P VV +  L+  L + K     + 
Sbjct: 31  SPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVIS 90

Query: 248 LFEEMRSKGVEPNVF-------------------------------------TYSSLMDG 270
           L ++M    + PNV+                                     T+ +L++G
Sbjct: 91  LCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNG 150

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC       A++L   +      P+++TY+T++ GLCK G    A+++L +M+ +G KPD
Sbjct: 151 LCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPD 210

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              Y  +I   C   +  EA  F  EMV  GI PN +T+S       +++ G C     N
Sbjct: 211 VVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYS-------SILHGFCNLGQLN 263

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  ++  M  R++  +++T++ L+   CK+G I ++ R+ + +  +G  PD  T+SA+M
Sbjct: 264 EATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALM 323

Query: 450 TALWDRRKMRQAAELL 465
                + +M +A +L 
Sbjct: 324 DGYCLQSQMDEAQKLF 339



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 127/261 (48%), Gaps = 1/261 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T+S ++      +Q   A+ L D +  +    +  ++  +  G+ +  R  +
Sbjct: 310 NGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNE 369

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +  +M +    P   +Y T++    +  + ++A + ++ M   G+ P   + ++L+ 
Sbjct: 370 AKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLD 429

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK+ G +D AF++ + M      P    Y  LI G+C  GK+  A+ELF  +  K   
Sbjct: 430 GLCKH-GHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQ 488

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P+VVTYT +I+GL +     EA  +F +M   G  PN  TY+  + G  + G  S A+ L
Sbjct: 489 PSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRL 548

Query: 284 LQMMISKRHRPNIVTYSTLLN 304
           ++ M+ +    +  T+  LL+
Sbjct: 549 IEEMVGRGFSADSSTFQMLLD 569



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 15/261 (5%)

Query: 213 LFKEMETKACSPTVVTYTSLING-LCQS----KSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           + +   T   S T ++ +S+ NG  C +     SV +A+  F ++      P V  ++ L
Sbjct: 16  IHQHFTTSTASTTNISPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKL 75

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK--LQEAVEILDRMKLQ 325
           +  L K    S  + L + M     RPN+ T + L+N LC   +  +  A   L +M   
Sbjct: 76  LGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKL 135

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GL+P    +G +++  C   K  +A    DE+   G  P+ +T++       T+++GLCK
Sbjct: 136 GLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYT-------TIIKGLCK 188

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
                 A Q+   M  +    D + Y+++I   CK    +++     E+V  G  P+  T
Sbjct: 189 IGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVT 248

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S+++    +  ++ +A  L 
Sbjct: 249 YSSILHGFCNLGQLNEATSLF 269



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 43/260 (16%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +  +++A  +FD    +   GF      ++++I+    + +   A+ LL  +     D+T
Sbjct: 329 QSQMDEAQKLFDIMVGK---GFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDR--DLT 383

Query: 85  EDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            D   + ++ +G+ +  RP  A ++F +M  +G  P   +Y  +L  L +   L  AFR 
Sbjct: 384 PDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRL 443

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF----------------------- 179
            + M+E  I+P +   N+LI+ +C N G ++AA ++F                       
Sbjct: 444 LKAMQESKIEPHICIYNILIQGMC-NFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLL 502

Query: 180 ------------REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
                       R+M   GC P+S TY   I G  R G    A  L +EM  +  S    
Sbjct: 503 KEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSS 562

Query: 228 TYTSLINGLCQSKSVEEAMR 247
           T+  L++     + +   MR
Sbjct: 563 TFQMLLDLESNDEIISRFMR 582


>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 484

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 235/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K+   AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKNSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVITYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING CR+ K+ EA++ F EM+ K   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISSHCKVGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  +C  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIIV-RPQSTLHMEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +V+ LC                                      P+ AF++   M 
Sbjct: 371 AYNPIVEYLCNNGQTSKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKSEPADAKAALDSMIENDHLPDSSLFRSVMESLF 484



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 120/248 (48%), Gaps = 9/248 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   ++++L Q M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y  L   + + G+   A    ++M  +G++P    +  +I  F   GK 
Sbjct: 107 EELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A  F ++M    I+P+ +T+       NT++ G C+      A + ++ M+ ++I   
Sbjct: 167 ETANRFFEDMKSREISPDVITY-------NTMINGYCRVKKMEEAEKYFVEMKGKNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY++LI  +     +  + R+V+E+   G  P+  T+S ++  L +  KM +A   +L
Sbjct: 220 VVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARS-IL 278

Query: 467 LELMNKCV 474
            E+++K +
Sbjct: 279 KEMVDKYI 286


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/419 (31%), Positives = 225/419 (53%), Gaps = 16/419 (3%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGR 97
           E A+GF  D  T++  ++ L   +    A  ++D + +E  D    T +I ++     G+
Sbjct: 277 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           +    +A  + ++M + GC P   ++ T++A L   N+L+ A    R +   G+ P V +
Sbjct: 337 LE---EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N+LI ALCK  G    A ++F EM N GCTPD  TY TLI+ LC LGK+ +A +L K+M
Sbjct: 394 FNILINALCK-VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 452

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           E+  C  + +TY ++I+GLC+   +EEA  +F++M  +G+  N  T+++L+DGLCK    
Sbjct: 453 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 512

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A  L+  MIS+  +PN +TY+++L   CK+G +++A +IL+ M   G + D   YG +
Sbjct: 513 DDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYL 396
           I+  C  G+ Q A   L  M + G+ P         + +N V+Q L + +  R A  ++ 
Sbjct: 573 INGLCKAGRTQVALKVLRGMRIKGMRPTP-------KAYNPVLQSLFRRNNIRDALSLFR 625

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            M       D+LTY  +    C+ G  I ++   + E+V  G +P+  ++  +   L +
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLN 684



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 220/424 (51%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D +TF+ ++   V       A  +  R+ +  C  T+     +  GY ++ R  
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+    +    G EP   +Y T +  L + + +  A +    M + G  P V + N+++
Sbjct: 269 DALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVV 328

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN G ++ A  I  +M +RGC PD  T+ TLI  LC   ++ EA +L +++  K  
Sbjct: 329 NCLCKN-GQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV 387

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP V T+  LIN LC+      A+RLFEEM++ G  P+  TY++L+D LC  G   +A++
Sbjct: 388 SPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALD 447

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M S     + +TY+T+++GLCK+ +++EA E+ D+M LQG+  +A  +  +I   C
Sbjct: 448 LLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLC 507

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
              K  +A   +++M+  G+ PN +T+       N+++   CK  D  +A  +  +M   
Sbjct: 508 KDKKIDDAFGLINQMISEGLQPNNITY-------NSILTHYCKQGDIKKAADILETMTAN 560

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              VD +TY +LI   CK G    + +++  + + G  P    ++ V+ +L+ R  +R A
Sbjct: 561 GFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDA 620

Query: 462 AELL 465
             L 
Sbjct: 621 LSLF 624



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 221/424 (52%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  TF+ ++  L  A+Q R A  +L+ ++       E  F ++ +G+       
Sbjct: 174 ARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIE 233

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+RV  +M E GC  T  +   ++    +  +++ A  + +     G +P   + N  +
Sbjct: 234 AALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFV 293

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+N   +  A K+   M   G  PD +TY  ++N LC+ G++ EAK +  +M  + C
Sbjct: 294 NGLCQND-HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGC 352

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P + T+ +LI  LC    +EEA+ L  ++  KGV P+V+T++ L++ LCK G    A+ 
Sbjct: 353 LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALR 412

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M +    P+ VTY+TL++ LC  GKL +A+++L  M+  G       Y  II   C
Sbjct: 413 LFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
              + +EA    D+M L GI+ N +T+       NT++ GLCK    + AF +   M + 
Sbjct: 473 KKMRIEEAEEVFDQMDLQGISRNAITF-------NTLIDGLCKDKKIDDAFGLINQMISE 525

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  +++TY+S++T +CK+GDI K+A I++ +  +G   D  T+  ++  L    + + A
Sbjct: 526 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVA 585

Query: 462 AELL 465
            ++L
Sbjct: 586 LKVL 589



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 245/514 (47%), Gaps = 67/514 (13%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           Q+L  +R + D + AL + ++A A   + F      +  +I KL +       + L+  +
Sbjct: 43  QLLTALREQPDPDAALRMLNAALAR--DDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEM 100

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDKMKE-FGCEPTPKSYITVLAILVEEN 134
            +E   +   +  S    Y       DA+  + ++++  FG +     Y  +L +LVE +
Sbjct: 101 RREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGS 160

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCK--------------------------- 167
           ++KL    Y  M   GI+P V + N L+KALC+                           
Sbjct: 161 KMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFT 220

Query: 168 -------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
                    G+++AA ++   M   GC+    T   LING C+LG++ +A    ++    
Sbjct: 221 TLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIAD 280

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  +TY + +NGLCQ+  V  A+++ + M  +G +P+VFTY+ +++ LCK G   +A
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             +L  M+ +   P+I T++TL+  LC   +L+EA+++  ++ ++G+ PD   +  +I+ 
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------------------------- 374
            C +G    A    +EM   G TP+ +T++  I                           
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 375 --IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
              +NT++ GLC K     A +V+  M  + IS +++T+++LI   CK   I  +  +++
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLIN 520

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++ +G  P+  T+++++T    +  +++AA++L
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 115/283 (40%), Gaps = 37/283 (13%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++ +I  L S  +   A DLL  +    C  +   + +I  G  +  R  +
Sbjct: 420 SGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEE 479

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD+M   G      ++ T++  L ++ ++  AF     M   G+QP   + N ++ 
Sbjct: 480 AEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILT 539

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK----------------- 206
             CK  G +  A  I   M   G   D  TYGTLINGLC+ G+                 
Sbjct: 540 HYCK-QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598

Query: 207 ------------------IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMR 247
                             I +A  LF+EM      P  +TY  +  GLC+    ++EA  
Sbjct: 599 PTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFD 658

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
              EM  KG  P   ++  L +GL   G     +  +++++ K
Sbjct: 659 FMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEK 701



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 3/181 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K ++ A  + +   +E   G + +N T++ +++        + A D+L+ +     ++ 
Sbjct: 509 DKKIDDAFGLINQMISE---GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  R   A++V   M+  G  PTPK+Y  VL  L   N ++ A   +R
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E+G  P   +  ++ + LC+  G +  AF    EM ++G  P+  ++  L  GL  L
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685

Query: 205 G 205
           G
Sbjct: 686 G 686


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 217/407 (53%), Gaps = 32/407 (7%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+  G  + + P  A  +F+ MK   C P+  +Y T+L  L    +L+ A   ++ M 
Sbjct: 13  YNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEML 72

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           +      V S N+L+  LC+ +G ++ A + FR+M +R C+P+  TY  LI+GLC+  ++
Sbjct: 73  DRRSHD-VISFNILVTGLCR-AGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRV 129

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A EL + M+ + CSP V+TYT L++GLC+   V  A  +  EM   G  PN+ TY+SL
Sbjct: 130 SQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL 189

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + GLC+    S A+ L++ M  +   PN+VTY TL++GLCK G++++A  +L  M  +G 
Sbjct: 190 LHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG 249

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS----------------- 370
            PD  +Y  +I+  C   +  E+   L   V GGI P+ +T+S                 
Sbjct: 250 TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACR 309

Query: 371 --LHIR---------IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
             L+++         +++T++ GLCK    + AF +Y  M       D +TYS+LI   C
Sbjct: 310 LLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLC 369

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           K G + ++  ++  +V  G  P   T+++++  L D   + +A EL+
Sbjct: 370 KAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELV 416



 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 229/425 (53%), Gaps = 11/425 (2%)

Query: 48  HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRV 107
           HD  +F+++++ L  A +   A +   +++ ++C      +  +  G  + +R   A+ +
Sbjct: 77  HDVISFNILVTGLCRAGKIETALEFFRKMD-DRCSPNVITYSVLIDGLCKANRVSQAVEL 135

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            + MK  GC P   +Y  ++  L +E+++  A+   R M + G  P + + N L+  LC+
Sbjct: 136 LESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCR 195

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
                DA   + R+M  RGCTP+  TYGTLI+GLC++G++ +A  +  +M  K  +P ++
Sbjct: 196 ARRVSDA-LALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM 254

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            Y  LINGLC++  V+E++ L     S G++P+V TYSS++ GLC+     +A  LL  +
Sbjct: 255 IYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYV 314

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
            S+   P+++ YSTL++GLCK GK+ EA ++ + M   G   D   Y  +I   C  G+ 
Sbjct: 315 KSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRV 374

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            EA   L  MV  G  P+ +T+       N++++GLC  +  + A ++   M   + +  
Sbjct: 375 DEAHLLLARMVRMGTPPSTMTY-------NSLIKGLCDLNHLDEAIELVEEMERSNCAPS 427

Query: 407 SLTYSSLITCFCKKGDIHKSA-RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++TY+ LI   C+   +  +A     E++ +G +PD  T+S ++  L   + + +   L+
Sbjct: 428 AVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLV 487

Query: 466 LLELM 470
           L +++
Sbjct: 488 LDQMV 492



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 205/355 (57%), Gaps = 11/355 (3%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M++ GCEP   +Y +++  L + N+   A   + HM+ +   P + + N L+  L + +G
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFR-TG 59

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++ A  +F+EM +R  + D  ++  L+ GLCR GKI  A E F++M+ + CSP V+TY+
Sbjct: 60  KLERAMALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYS 117

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LI+GLC++  V +A+ L E M+++G  P+V TY+ L+DGLCK    + A E+L+ M+  
Sbjct: 118 VLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDA 177

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN+VTY++LL+GLC+  ++ +A+ ++  M  +G  P+   YG +I   C +G+ ++A
Sbjct: 178 GCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDA 237

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
              L +M+  G TP+       + I+N ++ GLCK D  + +  +     +  I  D +T
Sbjct: 238 CAMLADMIDKGGTPD-------LMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVT 290

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           YSS+I   C+   + ++ R++  +   GC PD   +S ++  L    K+ +A +L
Sbjct: 291 YSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDL 345



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 182/345 (52%), Gaps = 5/345 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V++A+ + +S  A    G   D  T+++++  L   ++   A ++L  +    C      
Sbjct: 129 VSQAVELLESMKAR---GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT 185

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+  G  R  R  DA+ +   M   GC P   +Y T++  L +  ++K A      M 
Sbjct: 186 YNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMI 245

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + G  P +   N+LI  LCK +  +D +  + R   + G  PD  TY ++I GLCR  ++
Sbjct: 246 DKGGTPDLMIYNMLINGLCK-ADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRL 304

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  L   ++++ C P V+ Y++LI+GLC++  V+EA  L+E M   G + +V TYS+L
Sbjct: 305 DEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTL 364

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGLCK G   +A  LL  M+     P+ +TY++L+ GLC    L EA+E+++ M+    
Sbjct: 365 IDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNC 424

Query: 328 KPDAGLYGKIISCFCDIGKYQEAA-NFLDEMVLGGITPNRLTWSL 371
            P A  Y  +I   C + +   AA ++  EM+  G+ P+ +T+S+
Sbjct: 425 APSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSI 469



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 165/319 (51%), Gaps = 41/319 (12%)

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M + GC P+  TY +LI+GLC+  +   A+ELF+ M++  CSP++VTY +L++GL ++  
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 242 VEEAMRLFEEM---RSKGV------------------------------EPNVFTYSSLM 268
           +E AM LF+EM   RS  V                               PNV TYS L+
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLI 120

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DGLCK    SQA+ELL+ M ++   P+++TY+ L++GLCKE K+  A E+L  M   G  
Sbjct: 121 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV 180

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           P+   Y  ++   C   +  +A   + +M   G TPN +T+        T++ GLCK   
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYG-------TLIDGLCKVGR 233

Query: 389 NR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            + A  +   M ++  + D + Y+ LI   CK   + +S  ++   V  G  PD  T+S+
Sbjct: 234 VKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSS 293

Query: 448 VMTALWDRRKMRQAAELLL 466
           V+  L    ++ +A  LLL
Sbjct: 294 VIYGLCRSNRLDEACRLLL 312



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 103/228 (45%), Gaps = 53/228 (23%)

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           MR  G EPNV TY+SL+DGLCK     +A EL + M S    P++VTY+TLL+GL + GK
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 312 LQEAV----EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           L+ A+    E+LDR                        +  +  +F              
Sbjct: 61  LERAMALFQEMLDR------------------------RSHDVISF-------------- 82

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
                    N +V GLC+      A + +  M +R  S + +TYS LI   CK   + ++
Sbjct: 83  ---------NILVTGLCRAGKIETALEFFRKMDDRC-SPNVITYSVLIDGLCKANRVSQA 132

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             +++ +   GC PD  T++ ++  L    K+  A E+L   L   CV
Sbjct: 133 VELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV 180



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 74/171 (43%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D   +S +I  L  A +   A DL + +  + CD     + ++  G  +  R  
Sbjct: 316 SRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVD 375

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +  +M   G  P+  +Y +++  L + N L  A      M      P   + N+LI
Sbjct: 376 EAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILI 435

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
             +C+      AA   F+EM + G  PD  TY  L+ GL +   ++E + L
Sbjct: 436 HGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHL 486


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/393 (32%), Positives = 210/393 (53%), Gaps = 11/393 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +  S+CR  G   R L+  R   +M   G  PT  +Y T++  L + N L      +  +
Sbjct: 7   VLQSLCRA-GDTARALEIFR--GEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G  P V + N LI +LCK +G ++ A ++  +M +RGC P+  TY  LINGLC++G+
Sbjct: 64  VERGHHPDVVTYNTLIDSLCK-AGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGR 122

Query: 207 IYEAKELFKEMETKACS--PTVVTYTSLINGLCQSKSVEEAMRLFEEMR--SKGVEPNVF 262
           I EA+EL +EM  K+C   P ++TY S ++GLC+     EA  L   +R  S  V P+  
Sbjct: 123 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 182

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T+S+L+DGLCK G   +A  +   MI+  + PN++TY+ L+NGLCK  K++ A  +++ M
Sbjct: 183 TFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESM 242

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G+ PD   Y  ++  FC   +  EA   L  M   G TPN L         N ++ G
Sbjct: 243 VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDK--VTFNILIAG 300

Query: 383 LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
            CK  +  +A  ++  M  +++  D +T+ +LI   CK G +  +  I+D +   G  P+
Sbjct: 301 ACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 360

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             T++A++  L    ++ +A + L   + + CV
Sbjct: 361 VVTYNALVHGLCKSGRIEEACQFLEEMVSSGCV 393



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 226/462 (48%), Gaps = 28/462 (6%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA----EDLL 73
           VLQ +    D  +AL IF    A   +G      T++ +I+ L  +N         E+L+
Sbjct: 7   VLQSLCRAGDTARALEIFRGEMAR--DGVAPTIVTYNTIINGLCKSNDLGAGMELFEELV 64

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           +R +         +  S+C+  G +    +A R+   M   GC P   +Y  ++  L + 
Sbjct: 65  ERGHHPDVVTYNTLIDSLCKA-GDLE---EARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 134 NQLKLAFRFYRHM--REIGIQPCVASLNVLIKALCKNSGTMDAA--FKIFREMPNRGCTP 189
            ++  A    + M  +   + P + + N  +  LCK S T +A    +  R+   R  +P
Sbjct: 121 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR-VSP 179

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+ T+ TLI+GLC+ G+I EA  +F +M      P V+TY +L+NGLC++  +E A  + 
Sbjct: 180 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 239

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI-----VTYSTLLN 304
           E M  KGV P+V TYS L+D  CK     +A+ELL  M S+   PN+     VT++ L+ 
Sbjct: 240 ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIA 299

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G CK G  ++A  + + M  + L+PD   +G +I   C  G+ + A + LD M   G+ P
Sbjct: 300 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 359

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           N +T+       N +V GLCK+     A Q    M +     DS+TY SL+   C+    
Sbjct: 360 NVVTY-------NALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 412

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             + ++V EL   G  PD  T++ ++  LW   K  QA  +L
Sbjct: 413 DDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVL 454



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 226/465 (48%), Gaps = 21/465 (4%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T   ++  +    D+   + +F+        G   D  T++ +I  L  A     A 
Sbjct: 36  TIVTYNTIINGLCKSNDLGAGMELFEELVER---GHHPDVVTYNTLIDSLCKAGDLEEAR 92

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK--SYITVLA 128
            L   ++   C      +  +  G  +V R  +A  +  +M    C+  P   +Y + L 
Sbjct: 93  RLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLD 152

Query: 129 ILVEENQLKLAFRFYRHMRE--IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
            L +++    A    R +R+  + + P   + + LI  LCK  G +D A  +F +M   G
Sbjct: 153 GLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCK-CGQIDEACSVFDDMIAGG 211

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             P+  TY  L+NGLC+  K+  A  + + M  K  +P V+TY+ L++  C++  V+EA+
Sbjct: 212 YVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEAL 271

Query: 247 RLFEEMRSKGVEPNVF-----TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
            L   M S+G  PNV      T++ L+ G CK G   QA  L + M++K  +P+++T+  
Sbjct: 272 ELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA 331

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L++GLCK G+++ A +ILD M   G+ P+   Y  ++   C  G+ +EA  FL+EMV  G
Sbjct: 332 LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG 391

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
             P+ +T+        ++V  LC+    + A Q+   +++     D++TY+ L+    K 
Sbjct: 392 CVPDSITY-------GSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKS 444

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G   ++  +++E+V  G  PD  T++A  + L     +    ELL
Sbjct: 445 GKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELL 489



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 116/322 (36%), Positives = 180/322 (55%), Gaps = 19/322 (5%)

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFR-EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
           VA  N+++++LC+ +G    A +IFR EM   G  P   TY T+INGLC+   +    EL
Sbjct: 1   VADYNIVLQSLCR-AGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMEL 59

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F+E+  +   P VVTY +LI+ LC++  +EEA RL  +M S+G  PNV TYS L++GLCK
Sbjct: 60  FEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCK 119

Query: 274 GGCSSQAMELLQMMISKRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK--P 329
            G   +A EL+Q M  K     PNI+TY++ L+GLCK+    EA E++  ++   L+  P
Sbjct: 120 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSP 179

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
           D   +  +I   C  G+  EA +  D+M+ GG  PN +T+       N +V GLCK D  
Sbjct: 180 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITY-------NALVNGLCKADKM 232

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC-----LPDEG 443
            RA  +  SM ++ ++ D +TYS L+  FCK   + ++  ++  +   GC     +PD+ 
Sbjct: 233 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKV 292

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           T++ ++          QA+ L 
Sbjct: 293 TFNILIAGACKAGNFEQASALF 314



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 201/432 (46%), Gaps = 63/432 (14%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI------------------------ 87
           T+S++I+ L    +   A +L+  + ++ CD+  +I                        
Sbjct: 109 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 168

Query: 88  ---------------FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
                          F ++  G  +  +  +A  VFD M   G  P   +Y  ++  L +
Sbjct: 169 SLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCK 228

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP--- 189
            ++++ A      M + G+ P V + +VL+ A CK S  +D A ++   M +RGCTP   
Sbjct: 229 ADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS-RVDEALELLHGMASRGCTPNVL 287

Query: 190 --DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
             D  T+  LI G C+ G   +A  LF+EM  K   P V+T+ +LI+GLC++  VE A  
Sbjct: 288 VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARD 347

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           + + M + GV PNV TY++L+ GLCK G   +A + L+ M+S    P+ +TY +L+  LC
Sbjct: 348 ILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALC 407

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           +  +  +A++++  +K  G  PD   Y  ++      GK ++A   L+EMV  G  P+  
Sbjct: 408 RASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSF 467

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMR------NRSISVDSLTYSSLITCFCKKG 421
           T++             C +  +R+  +  +M        + +  D+ T SS++   C+ G
Sbjct: 468 TFA------------ACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSG 515

Query: 422 DIHKSARIVDEL 433
            +     ++ E 
Sbjct: 516 KLDDVKAMIKEF 527



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 174/336 (51%), Gaps = 13/336 (3%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++A  +FD      A G+  +  T++ +++ L  A++   A  +++ +  +   +T D+
Sbjct: 197 IDEACSVFDDM---IAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG--VTPDV 251

Query: 88  --FLSICRGYGRVHRPLDAMRVFDKMKEFGCEP---TPK--SYITVLAILVEENQLKLAF 140
             +  +   + +  R  +A+ +   M   GC P    P   ++  ++A   +    + A 
Sbjct: 252 ITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQAS 311

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
             +  M    +QP V +   LI  LCK +G ++AA  I   M N G  P+  TY  L++G
Sbjct: 312 ALFEEMVAKNLQPDVMTFGALIDGLCK-AGQVEAARDILDLMGNLGVPPNVVTYNALVHG 370

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC+ G+I EA +  +EM +  C P  +TY SL+  LC++   ++A++L  E++S G +P+
Sbjct: 371 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPD 430

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY+ L+DGL K G + QA+ +L+ M+ K H+P+  T++   +GL + G L   +E+L 
Sbjct: 431 TVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLR 490

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
            +  +G+ PDA     I+   C  GK  +    + E
Sbjct: 491 VVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKE 526


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 234/451 (51%), Gaps = 12/451 (2%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           ++L  +R + D   AL + +SA A     F    + +  +I KL +A  F   E L+  +
Sbjct: 58  RLLTALREQADPEAALQMLNSALAR--EDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREM 115

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQ 135
            +E  +    +  S    Y R+ R  DA+  V +++  FG +     Y  +L +L E ++
Sbjct: 116 RREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSR 175

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           +KL    Y  M + GIQP V +LN LIKALC+ +  +  A  +  EM +    PD  T+ 
Sbjct: 176 MKLLESVYNEMTDRGIQPDVVTLNTLIKALCR-AHQVRTAVLMLEEMSSHAVAPDETTFT 234

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           TL+ G    G I  A  +  +M    CSPT VT   LING C+   VE+A+   ++  + 
Sbjct: 235 TLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIAD 294

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G EP+  TY++ +  LC+ G  S A++++ +M+ + H P++ TY+T++N L K G+L EA
Sbjct: 295 GFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEA 354

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
             I+++M  +G  PD   +  +I   C   + +EA +   E+ + G++P+  T+      
Sbjct: 355 KGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTF------ 408

Query: 376 HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            N ++  LCK  DP+   +++  M++   + D +TY+ LI   C  G +  +  ++ E+ 
Sbjct: 409 -NILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEME 467

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +GC     T++ ++ AL  + ++ +A E+ 
Sbjct: 468 SNGCPRSTVTYNTIIDALCKQMRIEEAEEVF 498



 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 215/416 (51%), Gaps = 10/416 (2%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           E A+GF  D  T++  +  L        A  ++D + +E  D     + ++     +   
Sbjct: 291 EIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGE 350

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A  + ++M + GC P   ++ T++  L  +N+L+ A    R +   G+ P V + N+
Sbjct: 351 LDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNI 410

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI ALCK  G      ++F EM + GC PD  TY  LI+ LC +GK+  A +L KEME+ 
Sbjct: 411 LINALCK-VGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESN 469

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C  + VTY ++I+ LC+   +EEA  +F++M + G+  +  T+++L+DGLCK      A
Sbjct: 470 GCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDA 529

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            EL++ M+ +  +P+ +TY+++L   CK+G L++A +IL+ M   G + D   YG +I+ 
Sbjct: 530 TELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLING 589

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMR 399
            C  G+ Q A   L  M + GI P         + +N V+Q L + +  R A  ++  M 
Sbjct: 590 LCKAGRTQVALKLLRGMRIKGIRPTP-------KAYNPVIQSLFRRNNLRDALSLFREMT 642

Query: 400 NRSISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
                 D+LTY  +    C+ G  I ++   + E+V  G +P+  ++  +   L +
Sbjct: 643 EVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLN 698



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/418 (29%), Positives = 208/418 (49%), Gaps = 9/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D +TF+ ++   +       A  +  ++ +  C  T      +  GY ++ R  DA+   
Sbjct: 229 DETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYI 288

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            K    G EP   +Y T +  L +   +  A +    M + G  P V + N +I  L KN
Sbjct: 289 QKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKN 348

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D A  I  +M +RGC PD+ T+ TLI  LC   ++ EA +L +E+  K  SP V T
Sbjct: 349 -GELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYT 407

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  LIN LC+       +RLFEEM+S G  P+  TY+ L+D LC  G    A++LL+ M 
Sbjct: 408 FNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEME 467

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S     + VTY+T+++ LCK+ +++EA E+ D+M   G+   A  +  +I   C   +  
Sbjct: 468 SNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRID 527

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
           +A   +++MV  G+ P+ +T+       N+++   CK  D  +A  +  +M      +D 
Sbjct: 528 DATELIEQMVKEGLQPSNITY-------NSILTHYCKQGDLKKAADILETMTANGFEIDV 580

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY +LI   CK G    + +++  + + G  P    ++ V+ +L+ R  +R A  L 
Sbjct: 581 VTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLF 638



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 214/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T + +I  L  A+Q R A  +L+ ++       E  F ++ +G+        A
Sbjct: 190 GIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAA 249

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +RV  KM E GC PT  +   ++    +  +++ A  + +     G +P   + N  +  
Sbjct: 250 LRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHC 309

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC+N G +  A K+   M   G  PD +TY T+IN L + G++ EAK +  +M  + C P
Sbjct: 310 LCQN-GHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLP 368

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              T+ +LI  LC    +EEA+ L  E+  KG+ P+V+T++ L++ LCK G     + L 
Sbjct: 369 DTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLF 428

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M S    P+ VTY+ L++ LC  GKL  A+++L  M+  G       Y  II   C  
Sbjct: 429 EEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQ 488

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            + +EA    D+M   GI+ + +T+       NT++ GLCK    + A ++   M    +
Sbjct: 489 MRIEEAEEVFDQMDAHGISRSAVTF-------NTLIDGLCKAKRIDDATELIEQMVKEGL 541

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
              ++TY+S++T +CK+GD+ K+A I++ +  +G   D  T+  ++  L    + + A +
Sbjct: 542 QPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALK 601

Query: 464 LL 465
           LL
Sbjct: 602 LL 603



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 164/390 (42%), Gaps = 29/390 (7%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P+   Y  ++  L       L     R MR  G +     +   +++  +     DA   
Sbjct: 87  PSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDL 146

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  ++   G   D+  Y  L+N L    ++   + ++ EM  +   P VVT  +LI  LC
Sbjct: 147 VRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALC 206

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           ++  V  A+ + EEM S  V P+  T+++LM G  + G    A+ +   M+     P  V
Sbjct: 207 RAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRV 266

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           T + L+NG CK G++++A+  + +    G +PD   Y   + C C  G    A   +D M
Sbjct: 267 TVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLM 326

Query: 358 VLGGITPNRLTWSLHIR----------------------------IHNTVVQGLCKTDP- 388
           +  G  P+  T++  I                               NT++  LC  +  
Sbjct: 327 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRL 386

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
             A  +   +  + +S D  T++ LI   CK GD H   R+ +E+   GC PDE T++ +
Sbjct: 387 EEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNIL 446

Query: 449 MTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +  L    K+  A +LL     N C  + V
Sbjct: 447 IDHLCSMGKLVNALDLLKEMESNGCPRSTV 476



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 2/249 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           +NG      T++ +I  L    +   AE++ D+++      +   F ++  G  +  R  
Sbjct: 468 SNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRID 527

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  + ++M + G +P+  +Y ++L    ++  LK A      M   G +  V +   LI
Sbjct: 528 DATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLI 587

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +G    A K+ R M  +G  P    Y  +I  L R   + +A  LF+EM     
Sbjct: 588 NGLCK-AGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGE 646

Query: 223 SPTVVTYTSLINGLCQSKS-VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            P  +TY  +  GLC+    ++EA     EM +KG  P   ++  L +GL   G     +
Sbjct: 647 PPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLI 706

Query: 282 ELLQMMISK 290
             ++++I K
Sbjct: 707 SAIELIIEK 715


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 222/419 (52%), Gaps = 14/419 (3%)

Query: 43  ANGFRHDNSTFSL--MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           A  +R+  S  S   ++S LV  N+F   E +   + + K       F ++  G  +V +
Sbjct: 186 AGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGK 245

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR---FYRHMREIGIQPCVAS 157
              A  V D MK +G  P   +Y T++    +  ++   ++     + M E  + P   +
Sbjct: 246 LNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVT 305

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            NVLI   CK+   + AA K+F EM ++G  P   TY +L+NGLC  GK+ EAK L  EM
Sbjct: 306 FNVLIDGFCKDE-NLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEM 364

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
            +    P V+TY +LING C+ K +EEA  LF+ +  +G+ PNV T+++L+ G CK G  
Sbjct: 365 LSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKM 424

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A  L ++M+ K   PN  TY+ L+ G C+EGK++E   +L+ M+ +G+K D   Y  +
Sbjct: 425 EEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNIL 484

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYL 396
           IS +C+  + ++AA  +DEM+  G+ P+ LT+       N ++ G C     R A  +  
Sbjct: 485 ISAWCEKKEPKKAARLIDEMLDKGLKPSHLTY-------NILLNGYCMEGNLRAALNLRK 537

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            M       + +TY+ LI  +C+KG +  +  +++E++  G +P+  T+  +   + ++
Sbjct: 538 QMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEK 596



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 249/491 (50%), Gaps = 47/491 (9%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD-NSTFSL-----M 56
           +K+  K+ + I     L  +    DV+  LV+       Y N  R + N  +S+     +
Sbjct: 63  LKSHVKFKSPI---DFLHQLMGSGDVDPLLVL------RYFNWSRRELNVNYSIELICRL 113

Query: 57  ISKLVSANQFRPAEDLLDRVNK--EKCDITEDIF--LSICRG---------------YGR 97
           ++ L +A  +     +LD   K    C I+  IF  LS+C G               Y  
Sbjct: 114 LNLLANAKHYPKIRSILDSFVKGETNCSISL-IFHSLSVCSGQFCANSIIADMLVLAYVE 172

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
             + +  +  F +  ++  + +  S   +L+ LV+EN+       Y+ M    I P + +
Sbjct: 173 NSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLIT 232

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC---RLGKIYEAKELF 214
            N +I  LCK  G ++ A  +  +M   G  P+  TY TLI+G C   R+GK+Y+A  + 
Sbjct: 233 FNTVINGLCK-VGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAIL 291

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           KEM     SP  VT+  LI+G C+ +++  A+++FEEM+S+G++P V TY+SL++GLC  
Sbjct: 292 KEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNE 351

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G  ++A  LL  M+S   +PN++TY+ L+NG CK+  L+EA E+ D +  QGL P+   +
Sbjct: 352 GKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITF 411

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV 394
             ++  +C  GK +EA      M+  G  PN  T+       N ++ G C+       + 
Sbjct: 412 NTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTY-------NCLIVGFCREGKMEEVKN 464

Query: 395 YLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            L+ M+ R +  D++TY+ LI+ +C+K +  K+AR++DE++  G  P   T++ ++    
Sbjct: 465 LLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYC 524

Query: 454 DRRKMRQAAEL 464
               +R A  L
Sbjct: 525 MEGNLRAALNL 535



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 186/339 (54%), Gaps = 12/339 (3%)

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           VE ++  L    ++   +   +  V S N L+ AL K +      F +++EM  R  +P+
Sbjct: 171 VENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEF-VYKEMIRRKISPN 229

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR--- 247
             T+ T+INGLC++GK+ +A ++  +M+     P VVTY +LI+G C+   V +  +   
Sbjct: 230 LITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADA 289

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           + +EM    V PN  T++ L+DG CK    S A+++ + M S+  +P +VTY++L+NGLC
Sbjct: 290 ILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLC 349

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
            EGKL EA  +LD M    LKP+   Y  +I+ +C     +EA    D +   G+TPN +
Sbjct: 350 NEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVI 409

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+       NT++ G CK      AF +   M  +    ++ TY+ LI  FC++G + + 
Sbjct: 410 TF-------NTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEV 462

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +++E+   G   D  T++ +++A  ++++ ++AA L+
Sbjct: 463 KNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLI 501



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 4/290 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +++++ AL +F+   ++   G +    T++ +++ L +  +   A+ LLD +        
Sbjct: 316 DENLSAALKVFEEMQSQ---GLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPN 372

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  GY +     +A  +FD + + G  P   ++ T+L    +  +++ AF   +
Sbjct: 373 VITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQK 432

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E G  P  ++ N LI   C+  G M+    +  EM  RG   D+ TY  LI+  C  
Sbjct: 433 VMLEKGFLPNASTYNCLIVGFCR-EGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEK 491

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            +  +A  L  EM  K   P+ +TY  L+NG C   ++  A+ L ++M  +G   NV TY
Sbjct: 492 KEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTY 551

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           + L+ G C+ G    A  LL  M+ K   PN  TY  +   + ++G L +
Sbjct: 552 NVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPD 601


>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 507

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/457 (29%), Positives = 240/457 (52%), Gaps = 13/457 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+    + L++ E+D  +AL IF+ A+ +   GF H+N+T+S+++  LV   +F   + +
Sbjct: 55  ISHESTVSLMKRERDPQRALDIFNKASQQ--KGFNHNNATYSVLLDNLVRHKKFLAVDAI 112

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG-CEPTPKSYITVLAILV 131
           L ++  E C   E +FL++ R + R       M +F+ ++     +P+  +  T L +L+
Sbjct: 113 LHQMKYETCRFQESLFLNLMRHFSRFDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLI 172

Query: 132 EENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT-P 189
           +  ++ LA +   + +  + +QP     N+L+K  CKN G +D+AF++  EM   G + P
Sbjct: 173 DSGEVDLARKLLLYAKHNLALQPNTCIFNILVKHHCKN-GDIDSAFRVVEEMKRSGISYP 231

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           +S TY TL++ L    +  EA ELF++M +K   SP  V +  +ING C+S  VE A  +
Sbjct: 232 NSITYSTLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVMINGFCRSGEVERAKMI 291

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            + M+  G  PNV+ YS+LM+G CK G   +A ++   +     + + V Y+TL+N LC+
Sbjct: 292 LDFMKKNGCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKTGLKLDTVGYTTLMNCLCR 351

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G++ EA+++L  MK    + DA  Y  I+      G+ +EA   LD+    G+  N+ +
Sbjct: 352 NGEIDEAMKLLGEMKASRCRADALTYNVILRGLSSEGRSEEALQMLDQWGCEGVHLNKGS 411

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           + +   I N +    C  +  +A +    M  R I     T++ L+   C+ G+     R
Sbjct: 412 YRI---ILNALC---CNGELEKAVKFLSVMSKRGIWPHHATWNELVVRLCESGNTEIGVR 465

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++   +  G +P   +W AV+ ++   RK+    ELL
Sbjct: 466 VLIGFLGIGLIPAPKSWGAVVESICKERKLVHVFELL 502



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 169/359 (47%), Gaps = 18/359 (5%)

Query: 117 EPTPK----SYITVLAILVEENQLKLAFR-FYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           E  PK    S+ + ++++  E   + A   F +  ++ G     A+ +VL+  L ++   
Sbjct: 47  ETNPKTKFISHESTVSLMKRERDPQRALDIFNKASQQKGFNHNNATYSVLLDNLVRHKKF 106

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTVVTYT 230
           + A   I  +M    C      +  L+    R     +  E+F  ++  A   P++   +
Sbjct: 107 L-AVDAILHQMKYETCRFQESLFLNLMRHFSRFDLHDKVMEMFNLIQVIARVKPSLNAIS 165

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQ-MMI 288
           + +N L  S  V+ A +L    +    ++PN   ++ L+   CK G    A  +++ M  
Sbjct: 166 TCLNLLIDSGEVDLARKLLLYAKHNLALQPNTCIFNILVKHHCKNGDIDSAFRVVEEMKR 225

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL-DRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           S    PN +TYSTL++ L  + + +EAVE+  D +  +G+ PD  ++  +I+ FC  G+ 
Sbjct: 226 SGISYPNSITYSTLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVMINGFCRSGEV 285

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A   LD M   G  PN   +S        ++ G CK      A QV+  ++   + +D
Sbjct: 286 ERAKMILDFMKKNGCNPNVYNYS-------ALMNGFCKEGKIQEAKQVFDEVKKTGLKLD 338

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ Y++L+ C C+ G+I ++ +++ E+    C  D  T++ ++  L    +  +A ++L
Sbjct: 339 TVGYTTLMNCLCRNGEIDEAMKLLGEMKASRCRADALTYNVILRGLSSEGRSEEALQML 397



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/286 (19%), Positives = 131/286 (45%), Gaps = 3/286 (1%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           ++   +   IT + ++  + A+    +A+ +F+   ++   G   D   F++MI+    +
Sbjct: 225 RSGISYPNSITYSTLMDCLFAQSRSKEAVELFEDMISK--RGISPDPVIFNVMINGFCRS 282

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
            +   A+ +LD + K  C+     + ++  G+ +  +  +A +VFD++K+ G +     Y
Sbjct: 283 GEVERAKMILDFMKKNGCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKTGLKLDTVGY 342

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
            T++  L    ++  A +    M+    +    + NV+++ L  + G  + A ++  +  
Sbjct: 343 TTLMNCLCRNGEIDEAMKLLGEMKASRCRADALTYNVILRGL-SSEGRSEEALQMLDQWG 401

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             G   +  +Y  ++N LC  G++ +A +    M  +   P   T+  L+  LC+S + E
Sbjct: 402 CEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSKRGIWPHHATWNELVVRLCESGNTE 461

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             +R+       G+ P   ++ ++++ +CK        ELL  + S
Sbjct: 462 IGVRVLIGFLGIGLIPAPKSWGAVVESICKERKLVHVFELLDSLAS 507


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 246/460 (53%), Gaps = 13/460 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S+ I+    ++LI+ E+D   AL IF+  + +   GF H+++T++ +I  L    +F+  
Sbjct: 45  SSYISHETAIKLIKNERDPQHALDIFNMVSEQ--QGFNHNHATYASIIQNLAKYKKFQAI 102

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE-PTPKSYITVLA 128
           + +L ++  + C + E IFL++ + + +       + +F  +K    E P+ K+  T L 
Sbjct: 103 DGVLHQMTYDTCKVHEGIFLNLMKHFSKSSMHERVLDMFYAIKSIVREKPSLKAISTCLN 162

Query: 129 ILVEENQLKLAFRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN-RG 186
           +LVE +++ LA +   + R ++ ++P     N+L+K  C+N G + AAF++ +EM + R 
Sbjct: 163 LLVESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRN-GDLQAAFEVVKEMKSARV 221

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEA 245
             P+  TY TLI GLC  GK+ EA E F+EM +K    P  +TY  LING CQ   V+ A
Sbjct: 222 SYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRA 281

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             + E M+S G  PNVF YS LM+G CK G   +A E+   + S   +P+ ++Y+TL+N 
Sbjct: 282 RTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINC 341

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LC+ G++ EA E+L +MK +  + D   +  ++   C  G++ EA + + ++   G   N
Sbjct: 342 LCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLN 401

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           + ++ +   + N + Q   K +  +A ++   M NR       T ++L+   C  G +  
Sbjct: 402 KGSYRI---VLNFLTQ---KGELRKATELLGLMLNRGFVPHHATSNTLLLLLCNNGMVKD 455

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +   +  L+  G  P+  +W  ++  +   RKM    ELL
Sbjct: 456 AVESLLGLLEMGFKPEHESWFTLVDLICRERKMLPVFELL 495



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 141/278 (50%), Gaps = 8/278 (2%)

Query: 52  TFSLMISKLVSANQFRPA----EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRV 107
           T+S +I  L    + + A    E+++ + N     +T +I ++     G+V R   A  +
Sbjct: 228 TYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDR---ARTI 284

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            + MK  GC P   +Y  ++    +E +L+ A   +  ++ +G++P   S   LI  LC+
Sbjct: 285 LEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCR 344

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
            +G +D A ++ ++M ++ C  D+ T+  ++ GLCR G+  EA ++ +++  +       
Sbjct: 345 -TGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKG 403

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +Y  ++N L Q   + +A  L   M ++G  P+  T ++L+  LC  G    A+E L  +
Sbjct: 404 SYRIVLNFLTQKGELRKATELLGLMLNRGFVPHHATSNTLLLLLCNNGMVKDAVESLLGL 463

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +    +P   ++ TL++ +C+E K+    E+LD +  Q
Sbjct: 464 LEMGFKPEHESWFTLVDLICRERKMLPVFELLDVLVTQ 501



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 115/244 (47%), Gaps = 1/244 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++++I+      +   A  +L+ +    C      +  +  GY +  R  +A  VF
Sbjct: 261 DALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVF 320

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           +++K  G +P   SY T++  L    ++  A    + M++   +    + NV++  LC+ 
Sbjct: 321 NEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCR- 379

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G  D A  + +++P  G   +  +Y  ++N L + G++ +A EL   M  +   P   T
Sbjct: 380 EGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFVPHHAT 439

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
             +L+  LC +  V++A+     +   G +P   ++ +L+D +C+        ELL +++
Sbjct: 440 SNTLLLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVDLICRERKMLPVFELLDVLV 499

Query: 289 SKRH 292
           ++ +
Sbjct: 500 TQEY 503



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 104/261 (39%), Gaps = 47/261 (18%)

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           E +  +    TY S+I  L + K  +    +  +M     + +   + +LM    K    
Sbjct: 75  EQQGFNHNHATYASIIQNLAKYKKFQAIDGVLHQMTYDTCKVHEGIFLNLMKHFSKSSMH 134

Query: 278 SQAMELLQMMIS-KRHRPNIVTYSTLLNGLCKEGKLQEAVEIL--DRMKLQGLKPDAGLY 334
            + +++   + S  R +P++   ST LN L +  ++  A ++L   R KL  L+P+  ++
Sbjct: 135 ERVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVDLARKLLVNARSKLN-LRPNTCIF 193

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV 394
             ++   C  G  Q                                          AF+V
Sbjct: 194 NILVKHHCRNGDLQA-----------------------------------------AFEV 212

Query: 395 YLSMRNRSISVDSL-TYSSLITCFCKKGDIHKSARIVDELVL-DGCLPDEGTWSAVMTAL 452
              M++  +S  +L TYS+LI   C+ G + ++    +E+V  D  LPD  T++ ++   
Sbjct: 213 VKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGF 272

Query: 453 WDRRKMRQAAELLLLELMNKC 473
             R K+ +A  +L     N C
Sbjct: 273 CQRGKVDRARTILEFMKSNGC 293


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 240/441 (54%), Gaps = 16/441 (3%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           DV+ A+ + DS   +   G +    TF+ ++  L    +F  A+++   +  ++C +  D
Sbjct: 207 DVDAAIALVDSMANK---GLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAM--DQCSVAPD 261

Query: 87  I--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           +  F  +  G+ RV    +AM+ + +M++ G  P   S+  ++ +     ++  A  + R
Sbjct: 262 VRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLR 321

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M+ +G+ P      ++I   C+ +G+M  A ++  EM   GC PD  TY TL+NGLC+ 
Sbjct: 322 EMKGLGLVPDGVIYTMVIGGFCR-AGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQ 380

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            ++ +A+EL  EM+ +  +P + T+T+LI+G C+  + E+A++LF+ +  + + P+V  Y
Sbjct: 381 HRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAY 440

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +SL+DG+C+ G  ++A EL   M ++   PN VTYS L++  C++G+++EA   LD M  
Sbjct: 441 NSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVS 500

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +G  P+   Y  II  +C  G  ++   FL +M+   I P+ +T+       NT++ G  
Sbjct: 501 KGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITF-------NTLIHGYI 553

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K +  + AF V+  M    +  D++TY+ +I  F ++G++ ++ R+  ++   G  PD  
Sbjct: 554 KEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRY 613

Query: 444 TWSAVMTALWDRRKMRQAAEL 464
           T+ +++         ++A +L
Sbjct: 614 TYMSLINGHVTAGNSKEAFQL 634



 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 220/419 (52%), Gaps = 11/419 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD-AMRV 107
           D  T +++I     A     A  L+D +  +        F S+ +G  + HR  D A  V
Sbjct: 191 DVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCK-HRRFDKAKEV 249

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           F  M +    P  +S+  ++       +++ A +FY+ M++ G+ P V S + LI  L  
Sbjct: 250 FRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLI-GLFS 308

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G MD A    REM   G  PD   Y  +I G CR G + EA  +  EM    C P VV
Sbjct: 309 TRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVV 368

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY +L+NGLC+   + +A  L  EM+ +GV P++ T+++L+ G C+ G   +A++L   +
Sbjct: 369 TYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTL 428

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           + +R RP++V Y++L++G+C++G L +A E+ D M  + + P+   Y  +I   C+ G+ 
Sbjct: 429 LHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQV 488

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVD 406
           +EA  FLDEMV  G  PN +T+       N++++G C++   +  Q +L  M   +I  D
Sbjct: 489 EEAFGFLDEMVSKGNLPNIMTY-------NSIIKGYCRSGNVKKGQQFLQKMMQDNILPD 541

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +T+++LI  + K+ ++H +  + + +  +   PD  T++ ++    ++  M +A  + 
Sbjct: 542 LITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVF 600



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 170/320 (53%), Gaps = 7/320 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  G+ R     +A+RV D+M   GC P   +Y T+L  L ++++L  A      M
Sbjct: 334 IYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEM 393

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +E G+ P + +   LI   C++ G  + A ++F  + ++   PD   Y +LI+G+CR G 
Sbjct: 394 KERGVTPDLCTFTTLIHGYCRD-GNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGD 452

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A EL+ +M  +   P  VTY+ LI+  C+   VEEA    +EM SKG  PN+ TY+S
Sbjct: 453 LAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNS 512

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G   +  + LQ M+     P+++T++TL++G  KE  +  A  + + M+ + 
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM 572

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           ++PDA  Y  II+ F + G  +EA     +M   GI P+R T+   I  H T        
Sbjct: 573 VQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTA------G 626

Query: 387 DPNRAFQVYLSMRNRSISVD 406
           +   AFQ++  M +R  + D
Sbjct: 627 NSKEAFQLHDEMMHRGFAPD 646



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 201/450 (44%), Gaps = 79/450 (17%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F  + R Y +  +P +A   F  + +        +   +LA L       LA   YR +
Sbjct: 89  VFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEEAYRLV 148

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
                +    +LN+++ + CK S   D A  +  EM  R   PD  T+  LI+   R G 
Sbjct: 149 LSSDSEVNAYTLNIMVHSYCK-SLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGD 207

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSK-------------------------- 240
           +  A  L   M  K   P +VT+ S++ GLC+ +                          
Sbjct: 208 VDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNI 267

Query: 241 ---------SVEEAMRLFEEMRSKGVEPNVFTYSSL---------MD------------- 269
                     VEEAM+ ++EM+ +GV P+V ++S L         MD             
Sbjct: 268 LIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLG 327

Query: 270 -------------GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
                        G C+ G  S+A+ +   M+     P++VTY+TLLNGLCK+ +L +A 
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAE 387

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           E+L+ MK +G+ PD   +  +I  +C  G +++A    D ++   + P+ + +       
Sbjct: 388 ELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAY------- 440

Query: 377 NTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N+++ G+C K D  +A +++  M  R I  + +TYS LI   C+KG + ++   +DE+V 
Sbjct: 441 NSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVS 500

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G LP+  T+++++        +++  + L
Sbjct: 501 KGNLPNIMTYNSIIKGYCRSGNVKKGQQFL 530



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 157/321 (48%), Gaps = 1/321 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D   ++++I     A     A  + D +    C      + ++  G  + HR LDA
Sbjct: 327 GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDA 386

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + ++MKE G  P   ++ T++     +   + A + +  +    ++P V + N LI  
Sbjct: 387 EELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDG 446

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           +C+  G +  A +++ +M  R   P+  TY  LI+  C  G++ EA     EM +K   P
Sbjct: 447 MCR-KGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLP 505

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            ++TY S+I G C+S +V++  +  ++M    + P++ T+++L+ G  K      A  + 
Sbjct: 506 NIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVF 565

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M  +  +P+ VTY+ ++NG  ++G ++EA  +  +M   G++PD   Y  +I+     
Sbjct: 566 NIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTA 625

Query: 345 GKYQEAANFLDEMVLGGITPN 365
           G  +EA    DEM+  G  P+
Sbjct: 626 GNSKEAFQLHDEMMHRGFAPD 646



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 116/256 (45%), Gaps = 8/256 (3%)

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           +E+   +   + +P    +  LI    QS+   EA   F  +    V       ++L+  
Sbjct: 72  REIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAA 131

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           L + G    A E  ++++S     N  T + +++  CK  +  +A  ++  M+ + + PD
Sbjct: 132 LSRAGWPHLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPD 191

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              +  +I      G    A   +D M   G+ P  +T+       N+V++GLCK    +
Sbjct: 192 VVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTF-------NSVLKGLCKHRRFD 244

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A +V+ +M   S++ D  +++ LI  FC+ G++ ++ +   E+   G  PD  ++S ++
Sbjct: 245 KAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLI 304

Query: 450 TALWDRRKMRQAAELL 465
                R KM  AA  L
Sbjct: 305 GLFSTRGKMDHAAAYL 320


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 237/453 (52%), Gaps = 14/453 (3%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           ++L  +R + D   AL + +SA A     F   ++ +  ++ KL +A  F   E L+  +
Sbjct: 58  RLLAALREQSDPEAALRMLNSALAR--EDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREM 115

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDKMKE--FGCEPTPKSYITVLAILVEE 133
            +E   +   +  S    Y R+ R  DA+  V +++    FG +     +  +L +LVE 
Sbjct: 116 RREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEG 175

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           ++LKL    Y  M   GIQP V +LN LIKALC+ +  +  A  +  EM + G  PD  T
Sbjct: 176 SKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCR-AHQVRTAVLMLEEMSSHGVAPDETT 234

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           + TL+ G    G I  A  +  +M    CSPT VT   LING C+   VE+A+   ++  
Sbjct: 235 FTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEI 294

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           + G EP+  TY++ + GLC+ G  S A++++ +M+ + H P++ TY+T++N L K G+L 
Sbjct: 295 ADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELD 354

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA  I+++M  +G  PD   +  +I       + +EA +   E+ + G++P+  T+    
Sbjct: 355 EAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTF---- 410

Query: 374 RIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              N ++  LCK  DP+   +++  M++   + D +TY+ LI   C  G +  +  +++E
Sbjct: 411 ---NILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNE 467

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  +GC     T++ ++ AL  + ++ +A E+ 
Sbjct: 468 MESNGCPRSTVTYNTIIDALCKKMRIEEAEEVF 500



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 216/416 (51%), Gaps = 10/416 (2%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           E A+GF  D  T++  +  L        A  ++D + +E  D     + ++     +   
Sbjct: 293 EIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGE 352

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A  + ++M + GC P   ++ T++  L  +N+L+ A    R +   G+ P V + N+
Sbjct: 353 LDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNI 412

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI ALCK  G      ++F EM + GCTPD  TY  LI+ LC +GK+  A +L  EME+ 
Sbjct: 413 LINALCK-VGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESN 471

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C  + VTY ++I+ LC+   +EEA  +F++M ++G+  +  T+++L+DGLCK      A
Sbjct: 472 GCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDA 531

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            EL++ M+ +  +PN +TY+++L   CK+G +++A +IL+ M   G + D   YG +I+ 
Sbjct: 532 TELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLING 591

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMR 399
            C  G+ Q A   L  M + GI P         + +N V+Q L + +  R A  ++  M 
Sbjct: 592 LCKAGRTQVALKLLRGMRIKGIRPTP-------KAYNPVIQSLFRRNNLRDALNLFREMT 644

Query: 400 NRSISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
                 D+LTY  +    C+ G  I ++   + E+V  G +P+  ++  +   L +
Sbjct: 645 EVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLN 700



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/424 (29%), Positives = 210/424 (49%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G   D +TF+ ++   +       A  +  ++ +  C  T      +  GY ++ R  
Sbjct: 225 SHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVE 284

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+    +    G EP   +Y T +  L +   +  A +    M + G  P V + N +I
Sbjct: 285 DALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVI 344

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L KN G +D A  I  +M +RGC PD+ T+ TLI  L    ++ EA +L +E+  K  
Sbjct: 345 NCLSKN-GELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGL 403

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP V T+  LIN LC+       +RLFEEM+S G  P+  TY+ L+D LC  G    A++
Sbjct: 404 SPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALD 463

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M S     + VTY+T+++ LCK+ +++EA E+ D+M  QG+   A  +  +I   C
Sbjct: 464 LLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLC 523

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
              +  +A   +++MV  G+ PN +T+       N+++   CK  +  +A  +  +M   
Sbjct: 524 KAKRIDDATELIEQMVKEGLQPNNITY-------NSILTHYCKQGNIKKAADILETMTAN 576

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              +D +TY +LI   CK G    + +++  + + G  P    ++ V+ +L+ R  +R A
Sbjct: 577 GFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDA 636

Query: 462 AELL 465
             L 
Sbjct: 637 LNLF 640



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 215/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T + +I  L  A+Q R A  +L+ ++       E  F ++ +G+        A
Sbjct: 192 GIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAA 251

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +RV  KM E GC PT  +   ++    +  +++ A  + +     G +P   + N  +  
Sbjct: 252 LRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHG 311

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC+N G +  A K+   M   G  PD +TY T+IN L + G++ EAK +  +M  + C P
Sbjct: 312 LCQN-GHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLP 370

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              T+ +LI  L     +EEA+ L  E+  KG+ P+V+T++ L++ LCK G     + L 
Sbjct: 371 DTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLF 430

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M S    P+ VTY+ L++ LC  GKL  A+++L+ M+  G       Y  II   C  
Sbjct: 431 EEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKK 490

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            + +EA    D+M   GI+ + +T+       NT++ GLCK    + A ++   M    +
Sbjct: 491 MRIEEAEEVFDQMDAQGISRSAVTF-------NTLIDGLCKAKRIDDATELIEQMVKEGL 543

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +++TY+S++T +CK+G+I K+A I++ +  +G   D  T+  ++  L    + + A +
Sbjct: 544 QPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALK 603

Query: 464 LL 465
           LL
Sbjct: 604 LL 605



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 166/392 (42%), Gaps = 31/392 (7%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P+   Y  ++  L       L     R MR  G Q     +   +++  +     DA   
Sbjct: 87  PSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDL 146

Query: 178 IFREMPNR--GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           +  ++ N   G   D+  +  L+N L    K+   + ++ EM  +   P VVT  +LI  
Sbjct: 147 VLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKA 206

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           LC++  V  A+ + EEM S GV P+  T+++LM G  + G    A+ +   M+     P 
Sbjct: 207 LCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPT 266

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
            VT + L+NG CK G++++A+  + +    G +PD   Y   +   C  G    A   +D
Sbjct: 267 GVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMD 326

Query: 356 EMVLGGITPNRLTWSLHIR-------------IHNTVVQGLCKTDPN--RAFQVYLSMRN 400
            M+  G  P+  T++  I              I N +V   C  D        V LS +N
Sbjct: 327 LMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQN 386

Query: 401 R--------------SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           R               +S D  T++ LI   CK GD H   R+ +E+   GC PDE T++
Sbjct: 387 RLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYN 446

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            ++  L    K+  A +LL     N C  + V
Sbjct: 447 ILIDHLCSMGKLGNALDLLNEMESNGCPRSTV 478



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 2/249 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           +NG      T++ +I  L    +   AE++ D+++ +    +   F ++  G  +  R  
Sbjct: 470 SNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRID 529

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  + ++M + G +P   +Y ++L    ++  +K A      M   G +  V +   LI
Sbjct: 530 DATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLI 589

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +G    A K+ R M  +G  P    Y  +I  L R   + +A  LF+EM     
Sbjct: 590 NGLCK-AGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGE 648

Query: 223 SPTVVTYTSLINGLCQSKS-VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            P  +TY  +   LC+    ++EA     EM +KG  P   ++  L +GL   G     +
Sbjct: 649 PPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLI 708

Query: 282 ELLQMMISK 290
             ++++I K
Sbjct: 709 SAIELIIEK 717


>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 481

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 230/470 (48%), Gaps = 42/470 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ A K    AL  F     E +N F HD  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHAAKTSEHALQFF--RWVERSNLFEHDRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG MD A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKMDTAMRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ K   PTVVTYT+LI G      V +A+RL EEM+  G+
Sbjct: 192 INGCYRVKKMDEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVHDALRLVEEMKGYGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC  G  S+A  +L+ M+ K   P +   +  L++  C+ G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAGKMSEAQSILKEMVDKYIAPKDNSIFMRLISSQCEAGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G++  A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDRAVKLLDKLIEKDIIL-RPQSTLHMEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCSNGQTAKAEALVRQLLKLGVQDTTALNTLIRGYAQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            R +  +   Y +L+  + KK +   +   +D ++ +  LPD   + +VM
Sbjct: 431 RRKVDSEKSAYDALVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVM 480



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 121/248 (48%), Gaps = 9/248 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   ++++L Q M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y  L   + + G+   A    ++M  +G++P    +  +I  F   GK 
Sbjct: 107 EELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKM 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
             A  F ++M    I+P+ +T+       NT++ G  +    + A + ++ M+ ++I   
Sbjct: 167 DTAMRFFEDMKSREISPDVVTY-------NTMINGCYRVKKMDEAEKYFVEMKGKNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY++LI  +     +H + R+V+E+   G  P+  T+S ++  L +  KM + A+ +L
Sbjct: 220 VVTYTTLIKGYVSVDQVHDALRLVEEMKGYGIKPNAITYSTLLPGLCNAGKMSE-AQSIL 278

Query: 467 LELMNKCV 474
            E+++K +
Sbjct: 279 KEMVDKYI 286


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/421 (31%), Positives = 223/421 (52%), Gaps = 20/421 (4%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGR 97
           E ANGF  D  T++  ++ L        A  ++D + +E  D    T +I ++     G+
Sbjct: 281 EIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 340

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           +    +A  + ++M E GC P   ++ T++  L   N+L+ A    R +   G+ P V +
Sbjct: 341 LE---EAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYT 397

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N+LI ALCK  G    A ++F EM + GCTPD  TY TLI+ LC LGK+ +A +L KEM
Sbjct: 398 FNILINALCK-VGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEM 456

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           E+  C  + VTY ++I+GLC+   +EEA  +F++M  +G+  N  T+++L+DGLCK    
Sbjct: 457 ESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRI 516

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A +L+  MIS+  +PN +TY+++L   CK+G +++A +IL  M   G + D   YG +
Sbjct: 517 DDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTL 576

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGI--TPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQV 394
           I+  C  G+ Q A   L  M + G+  TP         + +N V+Q L + +  R A  +
Sbjct: 577 INGLCKAGRTQVALKLLRGMRIKGMRATP---------KAYNPVIQSLFRRNNTRDAMNL 627

Query: 395 YLSMRNRSISVDSLTYSSLITCFCK-KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +  M       D+ TY  +    C+  G I ++   + E+V  G +P+  ++  +   L 
Sbjct: 628 FREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLL 687

Query: 454 D 454
           +
Sbjct: 688 N 688



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 218/424 (51%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G   D +TF+ ++   V     + A  +  R+ +  C  T+     +  GY ++ R  
Sbjct: 213 SSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVE 272

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+    +    G EP   +Y T +  L +   +  A +    M + G  P V + N+++
Sbjct: 273 DALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVV 332

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN G ++ A  I  +M  RGC PD  T+ TLI  LC   ++ EA +L +++  K  
Sbjct: 333 NCLCKN-GQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGL 391

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP V T+  LIN LC+    + A+RLFEEM+S G  P+  TY++L+D LC  G   +A++
Sbjct: 392 SPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALD 451

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M S     + VTY+T+++GLCK+ +++EA E+ D+M LQG+  +A  +  +I   C
Sbjct: 452 LLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLC 511

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
              +  +A   + +M+  G+ PN +T+       N+++   CK  D  +A  +  +M   
Sbjct: 512 KDKRIDDANQLISQMISEGLQPNNITY-------NSILTHYCKQGDIKKAADILQTMTAN 564

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              VD +TY +LI   CK G    + +++  + + G       ++ V+ +L+ R   R A
Sbjct: 565 GFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDA 624

Query: 462 AELL 465
             L 
Sbjct: 625 MNLF 628



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/422 (30%), Positives = 221/422 (52%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  TF+ ++  L  A+Q R A  +L+ ++       E  F ++ +G+        A
Sbjct: 180 GIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAA 239

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +RV  +M E GC PT  +   ++    +  +++ A  + +     G +P   + N  +  
Sbjct: 240 LRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNG 299

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC+N G +  A K+   M   G  PD +TY  ++N LC+ G++ EAK +  +M  + C P
Sbjct: 300 LCQN-GHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLP 358

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            + T+ +LI  LC    +EEA+ L  ++  KG+ P+V+T++ L++ LCK G    A+ L 
Sbjct: 359 DITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLF 418

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M S    P+ VTY+TL++ LC  GKL +A+++L  M+  G       Y  II   C  
Sbjct: 419 EEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKK 478

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            + +EA    D+M L GI+ N +T+       NT++ GLCK    + A Q+   M +  +
Sbjct: 479 MRIEEAEEVFDQMDLQGISRNAITF-------NTLIDGLCKDKRIDDANQLISQMISEGL 531

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +++TY+S++T +CK+GDI K+A I+  +  +G   D  T+  ++  L    + + A +
Sbjct: 532 QPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALK 591

Query: 464 LL 465
           LL
Sbjct: 592 LL 593



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 234/453 (51%), Gaps = 14/453 (3%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP-AEDLLDR 75
           ++L  +R + D + AL + ++A A     F      +  +I KL +A       + L+  
Sbjct: 46  ELLTALREQPDPDAALRMLNAALAR--EDFAPGPEVYEEIIRKLGAAAGAADLMKVLVTE 103

Query: 76  VNKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDKMKE-FGCEPTPKSYITVLAILVEE 133
           + +E   +   +  S    Y R    +DA+  V +++   FG +     Y  +L +LVE 
Sbjct: 104 MRREGHQVRVGVVHSFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEG 163

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           +++KL    Y  M E GI+P V + N L+KALC+ +  +  A  +  EM + G  PD  T
Sbjct: 164 SKMKLLETVYSEMGERGIKPDVVTFNTLMKALCR-AHQVRTAVLMLEEMSSSGVAPDETT 222

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           + TL+ G    G I  A  +   M    CSPT VT   LING C+   VE+A+   ++  
Sbjct: 223 FTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEI 282

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           + G EP+  TY++ ++GLC+ G    A++++ +M+ + H P++ TY+ ++N LCK G+L+
Sbjct: 283 ANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLE 342

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA  IL++M  +G  PD   +  +I   C   + +EA +   ++ L G++P+  T+    
Sbjct: 343 EAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTF---- 398

Query: 374 RIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              N ++  LCK  DP  A +++  M++   + D +TY++LI   C  G + K+  ++ E
Sbjct: 399 ---NILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKE 455

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +   GC     T++ ++  L  + ++ +A E+ 
Sbjct: 456 MESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVF 488



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 40/300 (13%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D   AL +F+   +   +G   D  T++ +I  L S  +   A DLL  +    C  +  
Sbjct: 410 DPQLALRLFEEMKS---SGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTV 466

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + +I  G  +  R  +A  VFD+M   G      ++ T++  L ++ ++  A +    M
Sbjct: 467 TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQM 526

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G+QP   + N ++   CK  G +  A  I + M   G   D  TYGTLINGLC+ G+
Sbjct: 527 ISEGLQPNNITYNSILTHYCK-QGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGR 585

Query: 207 IY-----------------------------------EAKELFKEMETKACSPTVVTYTS 231
                                                +A  LF+EM      P   TY  
Sbjct: 586 TQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKI 645

Query: 232 LINGLCQSK-SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +  GLC+   S+ EA     EM  KG  P   ++  L +GL   G     +  ++++I K
Sbjct: 646 VFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIIEK 705


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 246/475 (51%), Gaps = 30/475 (6%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S+  T AQ+L  +R + D   AL +   A+ +    FR ++S +  ++ KL     F   
Sbjct: 49  SSNFTPAQLLDTLRRQNDETAALRLLSWASKQ--PNFRPNSSIYEEILRKLGKVGSFNSM 106

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK-EFGCEPTPKSYITVLA 128
           +D+L  +    C I   + L     Y +     + + + + M+ EFG       Y  +L 
Sbjct: 107 KDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYNFLLN 166

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
           +LV+ N+LKL    +  M   GI+P V++ N+LIKALCK +  +  A  +  EM + G  
Sbjct: 167 VLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCK-AHQIRPAILVMEEMSSYGLV 225

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM-- 246
           PD  T+ TL+ G    G +  A  + ++M    C  T VT   L++G C+   +EEA+  
Sbjct: 226 PDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSF 285

Query: 247 --------------RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL-QMMISKR 291
                          L+ EM++KG +P+ FTY+ L+D LC  G   +A+ LL +M IS  
Sbjct: 286 IDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGC 345

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            R N++TY+TL++G CK  K++EA EI D+M++QGL  ++  Y  +I   C   + QEAA
Sbjct: 346 AR-NVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAA 404

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
             +D+M++ G+ P++ T+       N+++   C+  D  +A  +  +M +     D +TY
Sbjct: 405 QLMDQMIMEGLKPDKFTY-------NSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTY 457

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +LI   CK G +  ++R++  + L G +     ++ V+ AL+ R++ ++A  L 
Sbjct: 458 GTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLF 512



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 212/425 (49%), Gaps = 24/425 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D   ++ +++ LV  N+ +  E++   +  +        F  + +   + H+   A
Sbjct: 153 GLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPA 212

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + V ++M  +G  P  K++ T++   +EE  +  AFR    M + G      ++NVL+  
Sbjct: 213 ILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHG 272

Query: 165 LCK---------------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            CK               N G    A +++ EM N+GC PD +TY  LI+ LC  GK+ E
Sbjct: 273 FCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQE 332

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  L +EME   C+  V+TY +LI+G C++K +EEA  +F++M  +G+  N  TY++L+D
Sbjct: 333 ALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLID 392

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLCK     +A +L+  MI +  +P+  TY+++L   C+EG +Q+A +I+  M   G +P
Sbjct: 393 GLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEP 452

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
           D   YG +I   C  G+ + A+  L  + L G+        L    +N V+Q L K    
Sbjct: 453 DIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMV-------LTPHAYNPVIQALFKRKRT 505

Query: 390 R-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPDEGTWSA 447
           + A +++  M  +  + D+ TY  +       G  I ++   V E++  G LP+  ++  
Sbjct: 506 KEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYM 565

Query: 448 VMTAL 452
           +   L
Sbjct: 566 LAEGL 570



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 11/324 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++++I  L    + + A  LL  +    C      + ++  G+ +  +  +A
Sbjct: 309 GCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEA 368

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FD+M+  G      +Y T++  L +  +++ A +    M   G++P   + N ++  
Sbjct: 369 EEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTY 428

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+  G +  A  I + M + GC PD  TYGTLI GLC+ G++  A  L + ++ K    
Sbjct: 429 FCR-EGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVL 487

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK-GGCSSQAMEL 283
           T   Y  +I  L + K  +EAMRLF EM  KG  P+ FTY  +  GL   GG   +A++ 
Sbjct: 488 TPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDF 547

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR-MKLQGLKPDAGLYGKIISCFC 342
           +  MI K   P   ++  L  GLC        ++++D  M+      +  +   +I  F 
Sbjct: 548 VIEMIEKGFLPEFSSFYMLAEGLCSLSMEDTLIKLVDLVMEKANFSQNEVV---MIRGFL 604

Query: 343 DIGKYQEAANFLDEMVLGGITPNR 366
            I K+Q+A        LGG+  +R
Sbjct: 605 KIRKFQDAL-----ATLGGLLDSR 623



 Score = 45.1 bits (105), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 4/156 (2%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           K T   +L     E D+ KA  I  + T+   NG   D  T+  +I  L  A +   A  
Sbjct: 419 KFTYNSMLTYFCREGDIQKAADIVQTMTS---NGCEPDIVTYGTLIGGLCKAGRVEVASR 475

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           LL  +  +   +T   +  + +   +  R  +AMR+F +M+E G  P   +Y  V   L 
Sbjct: 476 LLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLS 535

Query: 132 EE-NQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
                +  A  F   M E G  P  +S  +L + LC
Sbjct: 536 NSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLC 571


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 130/479 (27%), Positives = 234/479 (48%), Gaps = 33/479 (6%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           ++  +V++L+++EK+ + AL IFDS T     G+ H    F  ++ +L           +
Sbjct: 8   LSPKRVIKLLKSEKNPHSALSIFDSVTR--FPGYSHTPYVFHHILKRLFDPKLVAHVSRI 65

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILV 131
           ++ +  +KC   ED+ L++ + Y +   P  A+ +F +M E FGC+P  +SY ++L  L+
Sbjct: 66  VELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALI 125

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           E N+   A  F+ +   +G+ P + + N+LIK  C+     D A ++   M  +G +PD 
Sbjct: 126 ESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKK-QFDKAKELLNWMWEQGFSPDV 184

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           ++YGTLIN L + G + +A +LF EM  +  +P V  Y  LI+G  +   +  A  ++E 
Sbjct: 185 FSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWER 244

Query: 252 -MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            ++   V PN+ +Y+ +++GLCK G   ++ E+   M       ++ TYSTL++GLC  G
Sbjct: 245 LLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSG 304

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM------------- 357
            L  A  +   M   G+ PD  +Y  +++ +   G+ +E       M             
Sbjct: 305 NLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNI 364

Query: 358 VLGGITPNRLT------WSL--------HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           ++ G+  N         W L            +  +V GLCK    N+A  +     N  
Sbjct: 365 LIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGR 424

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             +D+  YSS+I   C++G + + A ++D++   GC P+    +AV+       K+  A
Sbjct: 425 GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDA 483



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 206/415 (49%), Gaps = 24/415 (5%)

Query: 48  HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD--ITEDIFL--SICRGYGRVHRPLD 103
            D  T+S +I  L  +       D   RV KE  +  ++ D+ +  ++  GY R  R  +
Sbjct: 288 QDLYTYSTLIHGLCGSGNL----DGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 343

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA---SLNV 160
            + ++  M++ GC  T  SY  ++  L E  ++  A   +  + E   + C A   +  V
Sbjct: 344 CLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPE---KDCCADSMTYGV 399

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+  LCKN G ++ A  I  E  N     D++ Y ++INGLCR G++ E   +  +M   
Sbjct: 400 LVHGLCKN-GYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKH 458

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C P      ++ING  ++  +E+A+R F  M SKG  P V TY++L++GL K    S+A
Sbjct: 459 GCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEA 518

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             L++ M+ K  +PN++TYS L+NGLC+  KL  A+ +  +   +G KPD  ++  II  
Sbjct: 519 YALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHG 578

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
            C  GK ++A     EM      PN +T       HNT+++G  K  D  RA +++  + 
Sbjct: 579 LCSSGKVEDALQLYSEMKQRKCVPNLVT-------HNTLMEGFYKVRDFERASKIWDHIL 631

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
                 D ++Y+  +   C    I  +   +++ V  G LP   TW+ ++ A+ D
Sbjct: 632 QYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLD 686



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 221/473 (46%), Gaps = 58/473 (12%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL-- 102
           G   +  T++++I       QF  A++LL+ + ++    + D+F      YG +   L  
Sbjct: 144 GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQ--GFSPDVF-----SYGTLINSLAK 196

Query: 103 -----DAMRVFDKMKEFGCEPTPKSY-ITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
                DA+++FD+M E G  P    Y I +     + + L  +  + R ++   + P + 
Sbjct: 197 NGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIP 256

Query: 157 SLNVLIKALCK----------------------------------NSGTMDAAFKIFREM 182
           S NV+I  LCK                                   SG +D A ++++EM
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM 316

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
              G +PD   Y T++NG  R G+I E  EL+K ME + C  TVV+Y  LI GL ++  V
Sbjct: 317 AENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKV 375

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           +EA+ ++E +  K    +  TY  L+ GLCK G  ++A+ +L+   + R   +   YS++
Sbjct: 376 DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 435

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           +NGLC+EG+L E   +LD+M   G KP+  +   +I+ F    K ++A  F   MV  G 
Sbjct: 436 INGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGC 495

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P  +T       +NT++ GL K +  + A+ +   M ++    + +TYS L+   C+  
Sbjct: 496 FPTVVT-------YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGK 548

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            +  +  +  + +  G  PD    + ++  L    K+  A +L       KCV
Sbjct: 549 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCV 601



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 151/297 (50%), Gaps = 1/297 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D+ T+ +++  L        A  +L+     + D+    + S+  G  R  R  +   V 
Sbjct: 393 DSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVL 452

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M + GC+P P     V+   V  ++L+ A RF+ +M   G  P V + N LI  L K 
Sbjct: 453 DQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSK- 511

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +     A+ + +EM ++G  P+  TY  L+NGLC+  K+  A  L+ +   K   P V  
Sbjct: 512 AERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKM 571

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  +I+GLC S  VE+A++L+ EM+ +   PN+ T+++LM+G  K     +A ++   ++
Sbjct: 572 HNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHIL 631

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
               +P+I++Y+  L GLC   ++ +AV  L+    +G+ P A  +  ++    D G
Sbjct: 632 QYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDNG 688



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 144/287 (50%), Gaps = 8/287 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTF--SLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +NKAL I + A     NG R D  TF  S MI+ L    +      +LD++ K  C    
Sbjct: 410 LNKALSILEEAE----NG-RGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNP 464

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +  ++  G+ R  +  DA+R F  M   GC PT  +Y T++  L +  +   A+   + 
Sbjct: 465 HVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKE 524

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   G +P + + ++L+  LC+    +D A  ++ +   +G  PD   +  +I+GLC  G
Sbjct: 525 MLHKGWKPNMITYSLLMNGLCQGK-KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+ +A +L+ EM+ + C P +VT+ +L+ G  + +  E A ++++ +   G +P++ +Y+
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYN 643

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             + GLC     S A+  L   + +   P  +T++ L+  +   G L
Sbjct: 644 ITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDNGAL 690


>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 237/474 (50%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K+   AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSAKNSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV++      SG ++ A + F +M +R   PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMMWGFFL-SGKVETANRFFEDMKSREIMPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           +NG CR+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 VNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGM 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++G CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYIAPTDNSIFMRLISGQCKAGDLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
            +L  M    +  +AG YG +I  +C  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 NVLKAMIRLSVPTEAGHYGVLIENYCKAGEYDKAIKLLDKVIEKDIIL-RPQSTLHMESS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPLIEYLCNNGQTAKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +  +Y SL+  + KK +   +   +D ++ +G LPD   + +VM +L+
Sbjct: 431 RRKVDSEQSSYDSLVQSYLKKNEPADAKAALDSMIENGHLPDSSLFRSVMESLF 484



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 113/239 (47%), Gaps = 8/239 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   +++++ Q M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y  L   + + G+   A    ++M  +G++P    +  ++  F   GK 
Sbjct: 107 EELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A  F ++M    I P+ +T+       NT+V G C+      A + ++ M+ R+I   
Sbjct: 167 ETANRFFEDMKSREIMPDVVTY-------NTMVNGYCRVKKMEEAEKYFVEMKGRNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +TY++LI  +     +  + R+V+E+   G  P+  T+S ++  L +  KM +A  +L
Sbjct: 220 VVTYTTLIKGYVSVDRVDDALRLVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSIL 278


>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 484

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 234/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K+   AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKNSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSXGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVITYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ K   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISSQCKAGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  +C  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKSMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIIV-RPQSTLHMEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +V+ LC                                      P+ AF++   M 
Sbjct: 371 AYNPIVEYLCNNGQTSKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVGSEKSAYDSLVQSYLKKSEPADAKAALDSMIENDHLPDSSLFRSVMESLF 484



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 118/248 (47%), Gaps = 9/248 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   ++++L Q M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y  L   + + G+   A    ++M   G++P    +  +I  F   GK 
Sbjct: 107 EELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSXGIEPTRHTFNVMIWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A  F ++M    I+P+ +T+       NT++ G  +      A + ++ M+ ++I   
Sbjct: 167 ETANRFFEDMKSREISPDVITY-------NTMINGYYRVKKMEEAEKYFVEMKGKNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY++LI  +     +  + R+V+E+   G  P+  T+S ++  L +  KM +A   +L
Sbjct: 220 VVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARS-IL 278

Query: 467 LELMNKCV 474
            E+++K +
Sbjct: 279 KEMVDKYI 286


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 224/421 (53%), Gaps = 19/421 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  TF++++  L  +NQ   A  LL R+ +  C   + I+ ++  GY +      A +  
Sbjct: 9   DAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFL 68

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M +  C PT  +Y  ++  L +  + K A +    MR+ G  P + + NV+++ LC+ 
Sbjct: 69  AEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEE 128

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
              +D A K+  EM  RG  PD  TY + I GLC+  ++ EA++    M     +P VV+
Sbjct: 129 R-KLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV---TPDVVS 184

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT++INGLC+S  ++ A R+ ++M ++G  P+V TYSSL+DG CKGG   +AM LL  M+
Sbjct: 185 YTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSML 244

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
               RPN+V Y++LL  L + G + +A ++L  M+ +G  PD   Y   I   C   + +
Sbjct: 245 KLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVK 304

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDS 407
           +A    D MV  G TPN  ++S+       +V+ LC K + + A  +    R +   VD 
Sbjct: 305 KAKAVFDRMVERGCTPNASSYSM-------LVEELCKKKELDDAITLVEQAREKYQIVDI 357

Query: 408 LTYSSLITCFCKKGDIHKS----ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           L Y+ L+   CK G   ++    ++++DE +   C PD   ++ ++ +   RR++ +A +
Sbjct: 358 LLYTVLLDGLCKGGRFDEACALFSKVLDEKI---CEPDVFFYNVMLDSHCKRRQIDKALQ 414

Query: 464 L 464
           +
Sbjct: 415 I 415



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 184/356 (51%), Gaps = 12/356 (3%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M +  C+P   ++  +L  L   NQL+ A +    M+E+G  P  A  N LI    K + 
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSK-AK 59

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
               AFK   EM    C P   TY  +++GLC+ G+  +A +L  EM  K CSP + TY 
Sbjct: 60  DFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYN 119

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            ++ GLC+ + ++EA ++ EEM  +G  P+V TY+S + GLCK     +A + L  M   
Sbjct: 120 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT 179

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++V+Y+T++NGLCK G L  A  +LD+M  +G  PD   Y  +I  FC  G+ + A
Sbjct: 180 ---PDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERA 236

Query: 351 ANFLDEMVLGGITPNRLTW-SLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT 409
              LD M+  G  PN + + SL   +H     G       +A  + + M  R  + D ++
Sbjct: 237 MGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIG-------KAEDMLVEMERRGFTPDVVS 289

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y++ I   CK   + K+  + D +V  GC P+  ++S ++  L  ++++  A  L+
Sbjct: 290 YNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLV 345



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 139/488 (28%), Positives = 222/488 (45%), Gaps = 75/488 (15%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D++ ++ +IS    A  F  A   L  + K  C  T   + +I  G  +  R  DA+++ 
Sbjct: 44  DDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLL 103

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M++ GC P   +Y  ++  L EE +L  A +    M   G  P V + N  IK LCK 
Sbjct: 104 DEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCK- 162

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
              +D A K    MP    TPD  +Y T+INGLC+ G +  A  +  +M  + C+P VVT
Sbjct: 163 CDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVT 219

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y+SLI+G C+   VE AM L + M   G  PN+  Y+SL+  L + G   +A ++L  M 
Sbjct: 220 YSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEME 279

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG---------------- 332
            +   P++V+Y+  ++GLCK  ++++A  + DRM  +G  P+A                 
Sbjct: 280 RRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELD 339

Query: 333 -------------------LYGKIISCFCDIGKYQEA----ANFLDEMVLGGITPNRLTW 369
                              LY  ++   C  G++ EA    +  LDE +     P+   +
Sbjct: 340 DAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKI---CEPDVFFY 396

Query: 370 SLHIRIH---------------------------NTVVQGLCKTDP-NRAFQVYLSMRNR 401
           ++ +  H                           N +V GLC  D  + A  + L+M + 
Sbjct: 397 NVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDE 456

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D +TY +L+   CK G    +  + +E V  GC+PD  T+SA++T L     M + 
Sbjct: 457 GFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLV-HENMAEE 515

Query: 462 AELLLLEL 469
           A LL  +L
Sbjct: 516 AYLLFTKL 523



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 163/286 (56%), Gaps = 11/286 (3%)

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M ++ C PD++T+  L+ GLCR  ++ +A++L   M+   C P    Y +LI+G  ++K 
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
             +A +   EM      P V TY++++DGLCK G +  A++LL  M  K   PNI TY+ 
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           ++ GLC+E KL EA ++L+ M ++G  PD   Y   I   C   +  EA  FL  M    
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---P 177

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           +TP+ ++++       TV+ GLCK+ D + A ++   M NR  + D +TYSSLI  FCK 
Sbjct: 178 VTPDVVSYT-------TVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKG 230

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           G++ ++  ++D ++  GC P+   +++++ AL     + +A ++L+
Sbjct: 231 GEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLV 276



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 182/406 (44%), Gaps = 22/406 (5%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +V +A+ + DS       G R +   ++ ++  L        AED+L  V  E+   T D
Sbjct: 232 EVERAMGLLDSMLKL---GCRPNMVAYNSLLGALHRLGHIGKAEDML--VEMERRGFTPD 286

Query: 87  I--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           +  + +   G  +  R   A  VFD+M E GC P   SY  ++  L ++ +L  A     
Sbjct: 287 VVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVE 346

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE-MPNRGCTPDSYTYGTLINGLCR 203
             RE      +    VL+  LCK  G  D A  +F + +  + C PD + Y  +++  C+
Sbjct: 347 QAREKYQIVDILLYTVLLDGLCK-GGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCK 405

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
             +I +A ++ K+M  + C   VVT+  L++GLC    + +A  +   M  +G  P+  T
Sbjct: 406 RRQIDKALQIHKQMLERNCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVT 464

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y +L+D +CK G S+ A+EL +  +     P++VTYS L+ GL  E   +EA  +  ++ 
Sbjct: 465 YGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL- 523

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
                 D  L+  +I  + + G          E++   + PN  T+   I       + L
Sbjct: 524 ------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESL 577

Query: 384 CKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 +A  ++          D    ++LI  F K GD+ ++ RI
Sbjct: 578 -----GKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRI 618



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 160/340 (47%), Gaps = 31/340 (9%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           L +AE+ V KA  +FD        G   + S++S+++ +L    +   A  L+++  +EK
Sbjct: 297 LCKAER-VKKAKAVFDRMVER---GCTPNASSYSMLVEELCKKKELDDAITLVEQA-REK 351

Query: 81  CDITEDIFL------SICRGYGRVHRPLDAMRVFDK-MKEFGCEPTPKSYITVLAILVEE 133
             I  DI L       +C+G GR     +A  +F K + E  CEP    Y  +L    + 
Sbjct: 352 YQIV-DILLYTVLLDGLCKG-GRFD---EACALFSKVLDEKICEPDVFFYNVMLDSHCKR 406

Query: 134 NQLKLAFRFYRHMREIGIQPC--VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
            Q+  A + ++ M E   + C  V + N+L+  LC +    DA   +   M + G  PD 
Sbjct: 407 RQIDKALQIHKQMLE---RNCCNVVTWNILVHGLCVDDRLSDAE-TMLLTMVDEGFIPDF 462

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TYGTL++ +C+ GK   A ELF+E     C P VVTY++LI GL      EEA  LF +
Sbjct: 463 VTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTK 522

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG-LCKEG 310
           +       +V  +++++ G  + G     ++L   +I     PN  T+   ++G L K  
Sbjct: 523 L-------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAE 575

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
            L +A  + DR    G  PD  +   +I  F   G  +EA
Sbjct: 576 SLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEA 615



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 43/85 (50%)

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M ++S   D+ T++ L+   C+   + K+ +++  +   GC+PD+  ++A+++     + 
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 458 MRQAAELLLLELMNKCVEAEVDIQN 482
             QA + L   + N C+   V   N
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTN 85


>gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 753

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 252/500 (50%), Gaps = 41/500 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ A ++   AL  F     E A  F++D  T   +I  L  A++   A  +L  + 
Sbjct: 112 VYNVLHAARNSEHALQFF--RWVERAGLFKNDRDTHMKIIEILGRASKLNHARCILLDMP 169

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  E +F+ +   YG+     +A+++F+KM E G E + KSY  +  +++   +  
Sbjct: 170 KKGVEWDEYMFVVLIESYGKAGIVQEAVKIFNKMNELGVERSIKSYDALFKVILRRGRYM 229

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R +  M   GIQP   + N+++      S  ++ A + + +M NRG +PD  TY T+
Sbjct: 230 MAKRVFNKMLNDGIQPTRHTYNIMLWGFFL-SLRLETAMRFYDDMKNRGISPDVVTYNTM 288

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R  K+ EA++LF EM+ K  +PTV++YT++I G      V++ +RL EEM+S  +
Sbjct: 289 INGFYRFKKMEEAEKLFVEMKGKNIAPTVISYTTMIKGYVAVDRVDDGLRLLEEMKSFNI 348

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PNV TYS+L+ GLC     ++A ++L  M+++   P +   +  LL+  CK G L+ A 
Sbjct: 349 KPNVHTYSTLLPGLCDAWKMTEAKDILIEMVARHLAPKDNSIFLRLLSCQCKAGDLRAAE 408

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIRI 375
           ++L+ M    +  +AG YG +I  FC   +Y  A  +LD+++   I    + T  +    
Sbjct: 409 DVLNTMMRLHIPTEAGHYGVLIENFCKAEEYDRAVKYLDKLIEKEIILRPQSTLEIESNA 468

Query: 376 HNTVVQGLCKTD-----------------------------------PNRAFQVYLSMRN 400
           +N ++Q LC                                      P+ AF+++  M  
Sbjct: 469 YNPMIQYLCSHGQTGKAEIFFRQLMKKGVQDPLAFNNLICGHAKEGYPDSAFEIFKIMGK 528

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R +  D+  Y  +I  + +KG+   +   +D ++ DG +PD   + +VM +L++  ++ Q
Sbjct: 529 RGVPRDADAYRLIIESYLRKGEPADAKTALDGMLEDGHVPDPSVFRSVMESLFEDGRV-Q 587

Query: 461 AAELLLLELMNKCVEAEVDI 480
            A  ++  ++ K V+  +D+
Sbjct: 588 TASRVMKSMVEKGVKENMDL 607



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 145/365 (39%), Gaps = 46/365 (12%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ MI+      +   AE L   +  +    T   + ++ +GY  V R  D 
Sbjct: 277 GISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAPTVISYTTMIKGYVAVDRVDDG 336

Query: 105 MRVFDKMKEFGCEPTPKSYITVLA-------------ILVE------------------- 132
           +R+ ++MK F  +P   +Y T+L              IL+E                   
Sbjct: 337 LRLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDILIEMVARHLAPKDNSIFLRLLS 396

Query: 133 ----ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM------ 182
                  L+ A      M  + I        VLI+  CK +   D A K   ++      
Sbjct: 397 CQCKAGDLRAAEDVLNTMMRLHIPTEAGHYGVLIENFCK-AEEYDRAVKYLDKLIEKEII 455

Query: 183 --PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
             P      +S  Y  +I  LC  G+  +A+  F+++  K     +  + +LI G  +  
Sbjct: 456 LRPQSTLEIESNAYNPMIQYLCSHGQTGKAEIFFRQLMKKGVQDPL-AFNNLICGHAKEG 514

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
             + A  +F+ M  +GV  +   Y  +++   + G  + A   L  M+   H P+   + 
Sbjct: 515 YPDSAFEIFKIMGKRGVPRDADAYRLIIESYLRKGEPADAKTALDGMLEDGHVPDPSVFR 574

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           +++  L ++G++Q A  ++  M  +G+K +  L GKI+      G  +EA   ++ ++  
Sbjct: 575 SVMESLFEDGRVQTASRVMKSMVEKGVKENMDLVGKILEALLMRGHVEEALGRIELLMQS 634

Query: 361 GITPN 365
           G   N
Sbjct: 635 GFHVN 639



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 142/331 (42%), Gaps = 18/331 (5%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           DNS F  ++S    A   R AED+L+ + +         +  +   + +      A++  
Sbjct: 387 DNSIFLRLLSCQCKAGDLRAAEDVLNTMMRLHIPTEAGHYGVLIENFCKAEEYDRAVKYL 446

Query: 109 DKMKEFGCEPTPKS--------YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           DK+ E      P+S        Y  ++  L    Q   A  F+R + + G+Q  +A  N 
Sbjct: 447 DKLIEKEIILRPQSTLEIESNAYNPMIQYLCSHGQTGKAEIFFRQLMKKGVQDPLA-FNN 505

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI    K  G  D+AF+IF+ M  RG   D+  Y  +I    R G+  +AK     M   
Sbjct: 506 LICGHAK-EGYPDSAFEIFKIMGKRGVPRDADAYRLIIESYLRKGEPADAKTALDGMLED 564

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P    + S++  L +   V+ A R+ + M  KGV+ N+     +++ L   G   +A
Sbjct: 565 GHVPDPSVFRSVMESLFEDGRVQTASRVMKSMVEKGVKENMDLVGKILEALLMRGHVEEA 624

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +  +++++        V +  LL+ L ++GK   A+++LD    +    D   Y K++  
Sbjct: 625 LGRIELLMQSGFH---VNFDDLLSVLSEKGKTIAALKLLDFALERDFNLDFKSYDKVLDA 681

Query: 341 FCDIGKYQEAANFL-DEMVLGGITPNRLTWS 370
               GK   A + L   M  GG++     WS
Sbjct: 682 LLAAGKTLNAYSILCKIMQKGGVS----DWS 708


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 130/479 (27%), Positives = 234/479 (48%), Gaps = 33/479 (6%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           ++  +V++L+++EK+ + AL IFDS T     G+ H    F  ++ +L           +
Sbjct: 8   LSPKRVIKLLKSEKNPHSALSIFDSVTR--FPGYSHTPYVFHHILKRLFDPKLVAHVSRI 65

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILV 131
           ++ +  +KC   ED+ L++ + Y +   P  A+ +F +M E FGC+P  +SY ++L  L+
Sbjct: 66  VELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALI 125

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           E N+   A  F+ +   +G+ P + + N+LIK  C+     D A ++   M  +G +PD 
Sbjct: 126 ESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKK-QFDKAKELLNWMWEQGFSPDV 184

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           ++YGTLIN L + G + +A +LF EM  +  +P V  Y  LI+G  +   +  A  ++E 
Sbjct: 185 FSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWER 244

Query: 252 -MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            ++   V PN+ +Y+ +++GLCK G   ++ E+   M       ++ TYSTL++GLC  G
Sbjct: 245 LLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSG 304

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM------------- 357
            L  A  +   M   G+ PD  +Y  +++ +   G+ +E       M             
Sbjct: 305 NLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNI 364

Query: 358 VLGGITPNRLT------WSL--------HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           ++ G+  N         W L            +  +V GLCK    N+A  +     N  
Sbjct: 365 LIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGR 424

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             +D+  YSS+I   C++G + + A ++D++   GC P+    +AV+       K+  A
Sbjct: 425 GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDA 483



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 221/473 (46%), Gaps = 58/473 (12%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL-- 102
           G   +  T++++I       QF  A++LL+ + ++    + D+F      YG +   L  
Sbjct: 144 GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQ--GFSPDVF-----SYGTLINSLAK 196

Query: 103 -----DAMRVFDKMKEFGCEPTPKSY-ITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
                DA+++FD+M E G  P    Y I +     + + L  +  + R ++   + P + 
Sbjct: 197 NGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIP 256

Query: 157 SLNVLIKALCK----------------------------------NSGTMDAAFKIFREM 182
           S NV+I  LCK                                   SG +D A ++++EM
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM 316

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
              G +PD   Y T++NG  R G+I E  EL+K ME + C  TVV+Y  LI GL ++  V
Sbjct: 317 AENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKV 375

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           +EA+ ++E +  K    +  TY  L+ GLCK G  ++A+ +L+   + R   +   YS++
Sbjct: 376 DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 435

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           +NGLC+EG+L E   +LD+M   G KP+  +   +I+ F    K ++A  F   MV  G 
Sbjct: 436 INGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGC 495

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P  +T       +NT++ GL K +  + A+ +   M ++    + +TYS L+   C+  
Sbjct: 496 FPTVVT-------YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGK 548

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            +  +  +  + +  G  PD    + ++  L    K+  A +L       KCV
Sbjct: 549 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCV 601



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 178/353 (50%), Gaps = 18/353 (5%)

Query: 48  HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD--ITEDI--FLSICRGYGRVHRPLD 103
            D  T+S +I  L  +       D   RV KE  +  ++ D+  + ++  GY R  R  +
Sbjct: 288 QDLYTYSTLIHGLCGSGNL----DGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 343

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            + ++  M++ GC  T  SY  ++  L E  ++  A   +  + E        +  VL+ 
Sbjct: 344 CLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVH 402

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCKN G ++ A  I  E  N     D++ Y ++INGLCR G++ E   +  +M    C 
Sbjct: 403 GLCKN-GYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCK 461

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P      ++ING  ++  +E+A+R F  M SKG  P V TY++L++GL K    S+A  L
Sbjct: 462 PNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYAL 521

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           ++ M+ K  +PN++TYS L+NGLC+  KL  A+ +  +   +G KPD  ++  II   C 
Sbjct: 522 VKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCS 581

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395
            GK ++A     EM      PN +T       HNT+++G  K  D  RA +++
Sbjct: 582 SGKVEDALQLYSEMKQRKCVPNLVT-------HNTLMEGFYKVRDFERASKIW 627



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 156/328 (47%), Gaps = 6/328 (1%)

Query: 35  FDSATAEYA----NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
            D AT  Y     NG   D   ++ M++  + A +     +L   + KE C       + 
Sbjct: 306 LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNIL 365

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           I RG     +  +A+ +++ + E  C     +Y  ++  L +   L  A           
Sbjct: 366 I-RGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGR 424

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
                 + + +I  LC+  G +D    +  +M   GC P+ +    +ING  R  K+ +A
Sbjct: 425 GDLDTFAYSSMINGLCR-EGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDA 483

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
              F  M +K C PTVVTY +LINGL +++   EA  L +EM  KG +PN+ TYS LM+G
Sbjct: 484 LRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNG 543

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC+G     A+ L    + K  +P++  ++ +++GLC  GK+++A+++   MK +   P+
Sbjct: 544 LCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPN 603

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMV 358
              +  ++  F  +  ++ A+   D ++
Sbjct: 604 LVTHNTLMEGFYKVRDFERASKIWDHIL 631



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 123/249 (49%), Gaps = 12/249 (4%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTF--SLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +NKAL I + A     NG R D  TF  S MI+ L    +      +LD++ K  C    
Sbjct: 410 LNKALSILEEAE----NG-RGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNP 464

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +  ++  G+ R  +  DA+R F  M   GC PT  +Y T++  L +  +   A+   + 
Sbjct: 465 HVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKE 524

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   G +P + + ++L+  LC+    +D A  ++ +   +G  PD   +  +I+GLC  G
Sbjct: 525 MLHKGWKPNMITYSLLMNGLCQGK-KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+ +A +L+ EM+ + C P +VT+ +L+ G  + +  E A ++++ +       N +   
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQSWSSSNCY--- 640

Query: 266 SLMDGLCKG 274
             M+  C+G
Sbjct: 641 -YMEHTCQG 648


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/459 (30%), Positives = 235/459 (51%), Gaps = 21/459 (4%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLD-- 74
            V  +++ +KD  KAL IF+S   E  +GF+H   T+  MI KL    +F   E +L   
Sbjct: 9   HVAAVLKYQKDPLKALSIFNSVKKE--DGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEM 66

Query: 75  RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           R+N +   + E +++S  R YGR  +  +A+ VF++M  + CEP+  SY  ++ ILVE  
Sbjct: 67  RLNVDN-SLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYG 125

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
               A + Y  M+  GI P V +  + IK+ C+    + AA ++   MP++GC  ++  Y
Sbjct: 126 YFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPL-AALRLLNNMPSQGCELNAVVY 184

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            T+I+G        EA ELF +M      P + T+  L++ LC+   ++E  +L  ++  
Sbjct: 185 CTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLK 244

Query: 255 KGVEPNVFTYSSLMDGLCKG----GCSSQAME---LLQMMISKRHRPNIVTYSTLLNGLC 307
            GV PN+FT++  + GLC+     G +S+ +E    L  M++K   P+  TY+T++ G  
Sbjct: 245 NGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYS 304

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K GK+Q+A  IL   K +G  PD   Y  +I   C  G    A    +E +  G+ P+  
Sbjct: 305 KVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPS-- 362

Query: 368 TWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
                I ++NT+++GL +     +A Q+   M    +S D  TY+ +I   CK G +  +
Sbjct: 363 -----IVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDA 417

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +++  +  G LPD  T++ ++     R KM  A  +L
Sbjct: 418 NNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGIL 456



 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/427 (29%), Positives = 222/427 (51%), Gaps = 26/427 (6%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFD 109
           +++ +++ LV    F  A  +  R+  E   I  D+  F    + + R  RPL A+R+ +
Sbjct: 113 SYNAIMNILVEYGYFNQAHKVYLRMKHE--GIAPDVCTFTIRIKSFCRTKRPLAALRLLN 170

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
            M   GCE     Y TV++   EEN    A+  +  M  +GI P +A+ N L+  LCK  
Sbjct: 171 NMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCK-K 229

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG-------KIYEAKELFKEMETKAC 222
           G +    K+  ++   G  P+ +T+   I GLCR G       K+ EA+    +M  K  
Sbjct: 230 GHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGL 289

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   TY ++I G  +   +++A R+ ++ + KG  P+ FTY SL+ G+C+ G    A+ 
Sbjct: 290 EPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALA 349

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L +  + K  +P+IV Y+TL+ GL ++G + +A+++++ M  +G+ PD   Y  +I+  C
Sbjct: 350 LFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLC 409

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNR 401
            +G   +A N L+  +  G  P+  T+       NT++ G CK    + A  +  SM + 
Sbjct: 410 KMGCVSDANNLLNAAIAKGYLPDIFTF-------NTLIDGYCKRLKMDNAIGILDSMWSH 462

Query: 402 SISVDSLTYSSLITCFCKKG---DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
            ++ D +TY+S++   CK     D+ ++ +++ E    GCLP+  T++ ++ +L   RK+
Sbjct: 463 GVTPDVITYNSILNGLCKAAKPEDVMETFKMIME---KGCLPNIITYNILIESLCKARKV 519

Query: 459 RQAAELL 465
            +A +LL
Sbjct: 520 TEALDLL 526



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 231/474 (48%), Gaps = 26/474 (5%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV-------SANQFRPAEDL 72
            L   EK +NK L           NG   +  TF++ I  L        + ++   AE+ 
Sbjct: 231 HLQEGEKLLNKVL----------KNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENY 280

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++  +  +  +  + +I  GY +V +  DA R+    K  G  P   +Y +++  + +
Sbjct: 281 LHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQ 340

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  +  A   +      G++P +   N LIK L +  G +  A ++  +M   G +PD +
Sbjct: 341 DGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQ-QGLVLKALQLMNDMSKEGMSPDIW 399

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY  +INGLC++G + +A  L      K   P + T+ +LI+G C+   ++ A+ + + M
Sbjct: 400 TYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSM 459

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            S GV P+V TY+S+++GLCK       ME  +M++ K   PNI+TY+ L+  LCK  K+
Sbjct: 460 WSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKV 519

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA+++L+ ++ +GL PD   +G +IS FC+ G   EA      M        +      
Sbjct: 520 TEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRM------EQQYRICHT 573

Query: 373 IRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           +  +N ++     K D + A +++  M ++    DS TY  +I  FCK G+++     + 
Sbjct: 574 VATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLL 633

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV-EAEVDIQNQD 484
           + +  G +P   T+  V+  L  + ++ +A  ++ L +    V EA V I + D
Sbjct: 634 KEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVVTIFDAD 687



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 167/357 (46%), Gaps = 23/357 (6%)

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
           PK    VL    +++ LK    F    +E G +    +   +I+ L  + G  DA  ++ 
Sbjct: 7   PKHVAAVLK--YQKDPLKALSIFNSVKKEDGFKHTFLTYKRMIEKLGFH-GEFDAMERVL 63

Query: 180 REMPNRGCTPDSYTYGTLINGL---CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
            EM  R    +S   G  ++ +    R GK+ EA ++F+ M+   C P++ +Y +++N L
Sbjct: 64  MEM--RLNVDNSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNIL 121

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
            +     +A +++  M+ +G+ P+V T++  +   C+      A+ LL  M S+    N 
Sbjct: 122 VEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNA 181

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           V Y T+++G  +E    EA E+ ++M   G+ P    + K++   C  G  QE    L++
Sbjct: 182 VVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNK 241

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCK--------TDPNRAFQVYLSMRNRSISVDSL 408
           ++  G+ PN  T+       N  +QGLC+        +    A      M N+ +  D  
Sbjct: 242 VLKNGVCPNLFTF-------NIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDF 294

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TY+++I  + K G I  ++RI+ +    G +PDE T+ +++  +     +  A  L 
Sbjct: 295 TYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALF 351


>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 481

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 230/470 (48%), Gaps = 42/470 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K    AL  F     E +N F+HD  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKKTEHALQFF--RWVERSNLFQHDRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDLWVLMIDSYGKKGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRFM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A   F +M +R  TPD  TY TL
Sbjct: 133 MAKRYFNKMLNEGIEPTRHTFNVMIWGFFL-SGKVETANXFFEDMKSRDITPDVITYNTL 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA+  F EM+ +   PTV+TYT+LI G      V++A+ L EEM+  G+
Sbjct: 192 INGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSLMEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++G CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPTDNSIFLKLISGQCKAGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  +C   KY +A N LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENYCKAEKYDKAVNLLDKLIEKDIIL-RPQSTLHMEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCDNGQTAKAETLVRQLMKLGVQEPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            R +  +   Y SL+  + KK +   +   +D ++ +G LPD   + +VM
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENGHLPDSSLFRSVM 480



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFQHDRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDLWVLMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ +LF++ME      T+ +Y +L   + +      A R F +M ++G+E
Sbjct: 88  DSYGKKGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRFMMAKRYFNKMLNEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P+++TY+TL+NG  +  K++EA   
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANXFFEDMKSRDITPDVITYNTLINGYYRVKKMEEAERY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A + ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSLMEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +  + A  +   M ++ I+  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEAQSILKEMVDKYIAPTDNSIFLKLISGQCKAGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       K  +A  LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENYCKAEKYDKAVNLL-----DKLIEKDIILRPQ 362


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 222/438 (50%), Gaps = 34/438 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNK--EKCDITEDIFLSICRGYGRVHRPL 102
           G+  +  TFS +I+ L    +   A +L+DR+ +   K D+      ++  G     +  
Sbjct: 251 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLI--TINTLVNGLCLSGKEA 308

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM + DKM E+GC+P   +Y  VL ++ +  Q  LA    R M E  I+      +++I
Sbjct: 309 EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 368

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK+ G++D AF +F EM  +G T +  TY  LI G C  G+  +  +L ++M  +  
Sbjct: 369 DGLCKH-GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI 427

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P VVT++ LI+   +   + EA  L +EM  +G+ P+  TY+SL+DG CK     +A +
Sbjct: 428 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQ 487

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           ++ +M+SK   PNI T++ L+NG CK  ++ + +E+  +M L+G+  D   Y  +I  FC
Sbjct: 488 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 547

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTW----------------------------SLHIR 374
           ++GK   A     EMV   + PN +T+                             L I 
Sbjct: 548 ELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIG 607

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           I+N ++ G+C     + A+ ++ S+  + +     TY+ +I   CKKG + ++  +  ++
Sbjct: 608 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 667

Query: 434 VLDGCLPDEGTWSAVMTA 451
             DG  PD  T++ ++ A
Sbjct: 668 EEDGHAPDGWTYNILIRA 685



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 193/363 (53%), Gaps = 7/363 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M      PT   +  + + + +  Q  L     + M   GI   + +L+++I
Sbjct: 169 DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMI 228

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  AF    ++   G  P++ T+ TLINGLC  G++ EA EL   M     
Sbjct: 229 NCFCR-CRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 287

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P ++T  +L+NGLC S    EAM L ++M   G +PN  TY  +++ +CK G ++ AME
Sbjct: 288 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAME 347

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M  +  + + V YS +++GLCK G L  A  + + M+++G+  +   Y  +I  FC
Sbjct: 348 LLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC 407

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           + G++ + A  L +M+   I PN +T+S  + I + V +G  +     A +++  M +R 
Sbjct: 408 NAGRWDDGAKLLRDMIKRKINPNVVTFS--VLIDSFVKEGKLR----EAEELHKEMIHRG 461

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I+ D++TY+SLI  FCK+  + K+ ++VD +V  GC P+  T++ ++       ++    
Sbjct: 462 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGL 521

Query: 463 ELL 465
           EL 
Sbjct: 522 ELF 524



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 178/368 (48%), Gaps = 11/368 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D   +S++I  L        A +L + +  E   IT +I  +  +  G+    R  D  +
Sbjct: 360 DAVKYSIIIDGLCKHGSLDNAFNLFNEM--EMKGITTNIITYNILIGGFCNAGRWDDGAK 417

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +   M +    P   ++  ++   V+E +L+ A   ++ M   GI P   +   LI   C
Sbjct: 418 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 477

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +  +D A ++   M ++GC P+  T+  LING C+  +I +  ELF++M  +      
Sbjct: 478 KEN-HLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 536

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VTY +LI G C+   +  A  LF+EM S+ V PN+ TY  L+DGLC  G S +A+E+ + 
Sbjct: 537 VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEK 596

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +   +   +I  Y+ +++G+C   K+ +A ++   + L+G+KP    Y  +I   C  G 
Sbjct: 597 IEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGP 656

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVD 406
             EA     +M   G  P+  T+++ IR H      L   D  ++ ++   ++    SVD
Sbjct: 657 LSEAELLFRKMEEDGHAPDGWTYNILIRAH------LGDGDATKSVKLIEELKRCGFSVD 710

Query: 407 SLTYSSLI 414
           + T   +I
Sbjct: 711 ASTIKMVI 718



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 167/336 (49%), Gaps = 9/336 (2%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A   +R M      P V   + L  A+ K +   D    + ++M  +G   + YT   +I
Sbjct: 170 AIDLFRDMIHSRPLPTVIDFSRLFSAIAK-TKQYDLVLALCKQMELKGIAHNLYTLSIMI 228

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           N  CR  K+  A     ++      P  +T+++LINGLC    V EA+ L + M   G +
Sbjct: 229 NCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK 288

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P++ T ++L++GLC  G  ++AM L+  M+    +PN VTY  +LN +CK G+   A+E+
Sbjct: 289 PDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 348

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L +M+ + +K DA  Y  II   C  G    A N  +EM + GIT N +T       +N 
Sbjct: 349 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT-------YNI 401

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ G C     +   ++   M  R I+ + +T+S LI  F K+G + ++  +  E++  G
Sbjct: 402 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 461

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             PD  T+++++        + +A +++ L +   C
Sbjct: 462 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC 497



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 154/293 (52%), Gaps = 8/293 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +FR+M +    P    +  L + + +  +      L K+ME K  +  + T + +
Sbjct: 168 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 227

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+ + +  A     ++   G EPN  T+S+L++GLC  G  S+A+EL+  M+   H
Sbjct: 228 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 287

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P+++T +TL+NGLC  GK  EA+ ++D+M   G +P+A  YG +++  C  G+   A  
Sbjct: 288 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAME 347

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
            L +M    I  + + +S+       ++ GLCK    + AF ++  M  + I+ + +TY+
Sbjct: 348 LLRKMEERNIKLDAVKYSI-------IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYN 400

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            LI  FC  G     A+++ +++     P+  T+S ++ +     K+R+A EL
Sbjct: 401 ILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEEL 453



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 152/327 (46%), Gaps = 36/327 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++++I    +A ++     LL  + K K +     F  +   + +  +  +A  +  +M
Sbjct: 398 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 457

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P   +Y +++    +EN L  A +    M   G  P + + N+LI   CK +  
Sbjct: 458 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCK-ANR 516

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D   ++FR+M  RG   D+ TY TLI G C LGK+  AKELF+EM ++   P +VTY  
Sbjct: 517 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 576

Query: 232 LINGLCQSKSVEEAMRLFEEMRS-----------------------------------KG 256
           L++GLC +   E+A+ +FE++                                     KG
Sbjct: 577 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 636

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           V+P V TY+ ++ GLCK G  S+A  L + M    H P+  TY+ L+     +G   ++V
Sbjct: 637 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSV 696

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCD 343
           ++++ +K  G   DA     +I    D
Sbjct: 697 KLIEELKRCGFSVDASTIKMVIDMLSD 723



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 7/200 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRP 101
           G   D  T++ +I       +   A++L   +   K     +T  I L      G   + 
Sbjct: 531 GVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEK- 589

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A+ +F+K+++   E     Y  ++  +   +++  A+  +  +   G++P V + N++
Sbjct: 590 --ALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 647

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I  LCK  G +  A  +FR+M   G  PD +TY  LI      G   ++ +L +E++   
Sbjct: 648 IGGLCK-KGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 706

Query: 222 CSPTVVTYTSLINGLCQSKS 241
            S    T   +I+ L   K+
Sbjct: 707 FSVDASTIKMVIDMLSDDKA 726


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/422 (31%), Positives = 217/422 (51%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+  +++ L        A  LL ++ K K +    I+ +I  G  +     DA
Sbjct: 215 GCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDA 274

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F+KM+  G  P   +Y ++++ L    +   A R   +M E  I P V + + LI A
Sbjct: 275 FALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDA 334

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G +  A K++ EM  R   PD +TY +LING C   ++ EAK +F+ M +K C P
Sbjct: 335 FVK-EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 393

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +LI G C++K VEE M LF EM  +G+  N  TY++L+ GL + G    A ++ 
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+S    P+I+TYS LL+GLCK GKL++A+ + + ++   ++PD   Y  +I   C  
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA 513

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSI 403
           GK ++  +    + L G+ PN       + I+ T++ G C+      A  ++  M+    
Sbjct: 514 GKVEDGWDLFCSLSLKGVKPN-------VIIYTTMISGFCRKGLKEEADALFREMKEDGT 566

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             DS  Y++LI    + GD   SA ++ E+   G + D  T S V+  L D R  +   E
Sbjct: 567 LPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLE 626

Query: 464 LL 465
           +L
Sbjct: 627 ML 628



 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 208/396 (52%), Gaps = 16/396 (4%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
            CR   R   PL A+ V  KM + G EP   +  ++L       ++  A      M E+G
Sbjct: 125 FCR---RSQLPL-ALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
            +P   + N LI  L  ++   +A   +  +M  RGC PD  TYG ++NGLC+ G I  A
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAV-ALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLA 239

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             L K+ME       VV Y ++I+GLC+ K +++A  LF +M +KG+ P+VFTY+SL+  
Sbjct: 240 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISC 299

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC  G  S A  LL  MI ++  PN+VT+S L++   KEGKL EA ++ D M  + + PD
Sbjct: 300 LCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PN 389
              Y  +I+ FC   +  EA +  + M+     PN +T+       NT+++G CK     
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY-------NTLIKGFCKAKRVE 412

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
              +++  M  R +  +++TY++LI    + GD   + +I  ++V DG  PD  T+S ++
Sbjct: 413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472

Query: 450 TALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQDV 485
             L    K+ +A  L++ E + K  + E DI   ++
Sbjct: 473 DGLCKYGKLEKA--LVVFEYLQKS-KMEPDIYTYNI 505



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 209/448 (46%), Gaps = 67/448 (14%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEF----------------------------------- 114
           S+  GY    R  DA+ + D+M E                                    
Sbjct: 155 SLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQR 214

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           GC+P   +Y  V+  L +   + LA    + M +  I+  V   N +I  LCK    +D 
Sbjct: 215 GCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYK-HIDD 273

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           AF +F +M  +G  PD +TY +LI+ LC  G+  +A  L   M  +  +P VVT+++LI+
Sbjct: 274 AFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALID 333

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
              +   + EA +L++EM  + ++P++FTYSSL++G C      +A  + ++MISK   P
Sbjct: 334 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 393

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N+VTY+TL+ G CK  +++E +E+   M  +GL  +   Y  +I      G    A    
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453

Query: 355 DEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQGLCKT 386
            +MV  G+ P+ +T+S+                             I  +N +++G+CK 
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA 513

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                 + ++ S+  + +  + + Y+++I+ FC+KG   ++  +  E+  DG LPD G +
Sbjct: 514 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCY 573

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKC 473
           + ++ A    R   +AA   L++ M  C
Sbjct: 574 NTLIRARL--RDGDKAASAELIKEMRSC 599



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 185/364 (50%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M +    P+   +  +L+ + +  +  L       M+ + I   + S N+LI
Sbjct: 63  DAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILI 122

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  PD  T  +L+NG C   +I +A  L  +M     
Sbjct: 123 NCFCRRS-QLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 181

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VT+ +LI+GL       EA+ L ++M  +G +P++ TY ++++GLCK G    A+ 
Sbjct: 182 KPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALS 241

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M   +   ++V Y+T+++GLCK   + +A  + ++M+ +G++PD   Y  +ISC C
Sbjct: 242 LLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLC 301

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           + G++ +A+  L  M+   I PN +T+S        ++    K      A ++Y  M  R
Sbjct: 302 NYGRWSDASRLLSNMIERKINPNVVTFS-------ALIDAFVKEGKLVEAEKLYDEMIKR 354

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI  D  TYSSLI  FC    + ++  + + ++   C P+  T++ ++      +++ + 
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 414

Query: 462 AELL 465
            EL 
Sbjct: 415 MELF 418



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 158/308 (51%), Gaps = 9/308 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F EM      P    +  L++ + ++ K      L + M+    S  + +Y  
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C+   +  A+ +  +M   G EP++ T SSL++G C     S A+ L+  M+   
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P+ VT++TL++GL    K  EAV ++D+M  +G +PD   YG +++  C  G    A 
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           + L +M  G I  +       + I+NT++ GLCK    + AF ++  M  + I  D  TY
Sbjct: 241 SLLKKMEKGKIEAD-------VVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTY 293

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +SLI+C C  G    ++R++  ++     P+  T+SA++ A     K+ + AE L  E++
Sbjct: 294 NSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVE-AEKLYDEMI 352

Query: 471 NKCVEAEV 478
            + ++ ++
Sbjct: 353 KRSIDPDI 360



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 6/198 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++Q +    D + A  IF    ++   G   D  T+S+++  L    +   A  +
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSD---GVPPDIITYSILLDGLCKYGKLEKALVV 487

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            + + K K +     +  +  G  +  +  D   +F  +   G +P    Y T+++    
Sbjct: 488 FEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCR 547

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +   + A   +R M+E G  P     N LI+A  ++ G   A+ ++ +EM + G   D+ 
Sbjct: 548 KGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRD-GDKAASAELIKEMRSCGFVGDAS 606

Query: 193 TYGTLINGL--CRLGKIY 208
           T   +IN L   RL K Y
Sbjct: 607 TISMVINMLHDGRLEKSY 624


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 216/405 (53%), Gaps = 9/405 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T ++M+     A     A  L+D +  +        + S+ +G  R      A  VF
Sbjct: 190 DVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVF 249

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M +FG  P  +S+  ++       +++ A + Y+ MR  GI+P + S + LI  L   
Sbjct: 250 KEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLI-GLFAR 308

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G MD A    REM   G  PD   Y  +I G CR G + +A  +  EM    C P VVT
Sbjct: 309 RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVT 368

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +L+NGLC+ + + +A  L  EMR +GV P++ T+++L+ G C  G   +A++L   M+
Sbjct: 369 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 428

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           ++R RP+IVTY+TL++G+C++G L +A ++ D M  + + P+   Y  +I   C+ G+ +
Sbjct: 429 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 488

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDS 407
           +A  FLDEM+  GI PN +T+       N++++G C++      Q +L  M    +S D 
Sbjct: 489 DAFGFLDEMINKGILPNIMTY-------NSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDL 541

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +TY++LI  + K+  +H + ++++ +  +   PD  T++ ++   
Sbjct: 542 ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGF 586



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 175/320 (54%), Gaps = 7/320 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  G+ R     DA+RV D+M   GC P   +Y T+L  L +E +L  A      M
Sbjct: 333 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 392

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           RE G+ P + +   LI   C   G +D A ++F  M N+   PD  TY TLI+G+CR G 
Sbjct: 393 RERGVPPDLCTFTTLIHGYCI-EGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 451

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A +L+ +M ++   P  VTY+ LI+  C+   VE+A    +EM +KG+ PN+ TY+S
Sbjct: 452 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 511

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G  S+  + LQ M+  +  P+++TY+TL++G  KE K+ +A ++L+ M+ + 
Sbjct: 512 IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK 571

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           ++PD   Y  +I+ F   G  QEA    ++M   GI P+R T+   I  H T        
Sbjct: 572 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTA------G 625

Query: 387 DPNRAFQVYLSMRNRSISVD 406
           +   AFQ++  M  R  + D
Sbjct: 626 NSKEAFQLHDEMLQRGFAPD 645



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 184/324 (56%), Gaps = 9/324 (2%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G++P + + N ++K LC+ SG  D A+++F+EM + G  PD  ++  LI G CR+G+I E
Sbjct: 221 GLKPGIVTYNSVLKGLCR-SGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEE 279

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +++KEM  +   P +V+++ LI    +   ++ AM    EMR  G+ P+   Y+ ++ 
Sbjct: 280 ALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIG 339

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G C+ G  S A+ +   M+     P++VTY+TLLNGLCKE +L +A  +L+ M+ +G+ P
Sbjct: 340 GFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPP 399

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388
           D   +  +I  +C  GK  +A    D M+   + P+ +T+       NT++ G+C+  D 
Sbjct: 400 DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTY-------NTLIDGMCRQGDL 452

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           ++A  ++  M +R I  + +TYS LI   C+KG +  +   +DE++  G LP+  T++++
Sbjct: 453 DKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSI 512

Query: 449 MTALWDRRKMRQAAELLLLELMNK 472
           +        + +  + L   ++NK
Sbjct: 513 IKGYCRSGNVSKGQKFLQKMMVNK 536



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 187/362 (51%), Gaps = 7/362 (1%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM + D M   G +P   +Y +VL  L        A+  ++ M + G+ P V S  +LI 
Sbjct: 210 AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIG 269

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+  G ++ A KI++EM +RG  PD  ++  LI    R GK+  A    +EM      
Sbjct: 270 GFCR-VGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 328

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  V YT +I G C++  + +A+R+ +EM   G  P+V TY++L++GLCK      A  L
Sbjct: 329 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 388

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M  +   P++ T++TL++G C EGKL +A+++ D M  Q L+PD   Y  +I   C 
Sbjct: 389 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 448

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
            G   +A +  D+M    I PN +T+S+ I  H        K     AF     M N+ I
Sbjct: 449 QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE------KGQVEDAFGFLDEMINKGI 502

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             + +TY+S+I  +C+ G++ K  + + +++++   PD  T++ ++       KM  A +
Sbjct: 503 LPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFK 562

Query: 464 LL 465
           LL
Sbjct: 563 LL 564



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 161/309 (52%), Gaps = 9/309 (2%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +LN+++   CK +   D    +  EM  R   PD  T+  +++   R G    A  L   
Sbjct: 158 TLNIMVHNYCK-ALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDS 216

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M +K   P +VTY S++ GLC+S   ++A  +F+EM   GV P+V +++ L+ G C+ G 
Sbjct: 217 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 276

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A+++ + M  +  +P++V++S L+    + GK+  A+  L  M+  GL PD  +Y  
Sbjct: 277 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 336

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL 396
           +I  FC  G   +A    DEMV  G  P+ +T+       NT++ GLCK       +  L
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTY-------NTLLNGLCKERRLLDAEGLL 389

Query: 397 S-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           + MR R +  D  T+++LI  +C +G + K+ ++ D ++     PD  T++ ++  +  +
Sbjct: 390 NEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 449

Query: 456 RKMRQAAEL 464
             + +A +L
Sbjct: 450 GDLDKANDL 458



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 131/263 (49%), Gaps = 6/263 (2%)

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           R G  + A + ++ + +        T   +++  C++   ++   +  EM  + V P+V 
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 192

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T++ ++D   + G +  AM L+  M+SK  +P IVTY+++L GLC+ G   +A E+   M
Sbjct: 193 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 252

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
              G+ PD   +  +I  FC +G+ +EA     EM   GI P+ +++S  I +       
Sbjct: 253 DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR---- 308

Query: 383 LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
             +   + A      MR   +  D + Y+ +I  FC+ G +  + R+ DE+V  GCLPD 
Sbjct: 309 --RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDV 366

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T++ ++  L   R++  A  LL
Sbjct: 367 VTYNTLLNGLCKERRLLDAEGLL 389



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 120/267 (44%), Gaps = 15/267 (5%)

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           G CR       +E+   +   + +P    +  LI    QS+   EA   F  +    V  
Sbjct: 67  GACR-------REIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPI 119

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
                ++L+  L + G    A +  +++ S     N  T + +++  CK  +  +   ++
Sbjct: 120 PAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVI 179

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
             M+ + + PD   +  ++      G  + A   +D MV  G+ P  +T+       N+V
Sbjct: 180 SEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTY-------NSV 232

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           ++GLC++   ++A++V+  M +  ++ D  +++ LI  FC+ G+I ++ +I  E+   G 
Sbjct: 233 LKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGI 292

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
            PD  ++S ++     R KM  A   L
Sbjct: 293 KPDLVSFSCLIGLFARRGKMDHAMAYL 319


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 221/418 (52%), Gaps = 9/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T ++M+     A     A  L+D +  +        + S+ +G  R      A  VF
Sbjct: 129 DVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVF 188

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M +FG  P  +S+  ++       +++ A + Y+ MR  GI+P + S + LI  L   
Sbjct: 189 KEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLI-GLFAR 247

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G MD A    REM   G  PD   Y  +I G CR G + +A  +  EM    C P VVT
Sbjct: 248 RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVT 307

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +L+NGLC+ + + +A  L  EMR +GV P++ T+++L+ G C  G   +A++L   M+
Sbjct: 308 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 367

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           ++R RP+IVTY+TL++G+C++G L +A ++ D M  + + P+   Y  +I   C+ G+ +
Sbjct: 368 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 427

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDS 407
           +A  FLDEM+  GI PN +T+       N++++G C++      Q +L  M    +S D 
Sbjct: 428 DAFGFLDEMINKGILPNIMTY-------NSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDL 480

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY++LI  + K+  +H + ++++ +  +   PD  T++ ++        +++A  + 
Sbjct: 481 ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIF 538



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 184/324 (56%), Gaps = 9/324 (2%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G++P + + N ++K LC+ SG  D A+++F+EM + G  PD  ++  LI G CR+G+I E
Sbjct: 160 GLKPGIVTYNSVLKGLCR-SGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEE 218

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +++KEM  +   P +V+++ LI    +   ++ AM    EMR  G+ P+   Y+ ++ 
Sbjct: 219 ALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIG 278

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G C+ G  S A+ +   M+     P++VTY+TLLNGLCKE +L +A  +L+ M+ +G+ P
Sbjct: 279 GFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPP 338

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388
           D   +  +I  +C  GK  +A    D M+   + P+ +T+       NT++ G+C+  D 
Sbjct: 339 DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTY-------NTLIDGMCRQGDL 391

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           ++A  ++  M +R I  + +TYS LI   C+KG +  +   +DE++  G LP+  T++++
Sbjct: 392 DKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSI 451

Query: 449 MTALWDRRKMRQAAELLLLELMNK 472
           +        + +  + L   ++NK
Sbjct: 452 IKGYCRSGNVSKGQKFLQKMMVNK 475



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 173/316 (54%), Gaps = 7/316 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  G+ R     DA+RV D+M   GC P   +Y T+L  L +E +L  A      M
Sbjct: 272 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 331

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           RE G+ P + +   LI   C   G +D A ++F  M N+   PD  TY TLI+G+CR G 
Sbjct: 332 RERGVPPDLCTFTTLIHGYCI-EGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 390

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A +L+ +M ++   P  VTY+ LI+  C+   VE+A    +EM +KG+ PN+ TY+S
Sbjct: 391 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 450

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G  S+  + LQ M+  +  P+++TY+TL++G  KE K+ +A ++L+ M+ + 
Sbjct: 451 IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK 510

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           ++PD   Y  +I+ F   G  QEA    ++M   GI P+R T+   I  H T        
Sbjct: 511 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTA------G 564

Query: 387 DPNRAFQVYLSMRNRS 402
           +   AFQ++  M  R 
Sbjct: 565 NSKEAFQLHDEMLQRG 580



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 185/379 (48%), Gaps = 9/379 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F  + R Y +  +P +A   F  + +        +   +LA L       LA   YR +
Sbjct: 27  VFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLV 86

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
                +    +LN+++   CK +   D    +  EM  R   PD  T+  +++   R G 
Sbjct: 87  FSSNSEVNTYTLNIMVHNYCK-ALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGD 145

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
              A  L   M +K   P +VTY S++ GLC+S   ++A  +F+EM   GV P+V +++ 
Sbjct: 146 AEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTI 205

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+ G C+ G   +A+++ + M  +  +P++V++S L+    + GK+  A+  L  M+  G
Sbjct: 206 LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG 265

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L PD  +Y  +I  FC  G   +A    DEMV  G  P+ +T+       NT++ GLCK 
Sbjct: 266 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTY-------NTLLNGLCKE 318

Query: 387 DPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                 +  L+ MR R +  D  T+++LI  +C +G + K+ ++ D ++     PD  T+
Sbjct: 319 RRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTY 378

Query: 446 SAVMTALWDRRKMRQAAEL 464
           + ++  +  +  + +A +L
Sbjct: 379 NTLIDGMCRQGDLDKANDL 397



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 131/263 (49%), Gaps = 6/263 (2%)

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           R G  + A + ++ + +        T   +++  C++   ++   +  EM  + V P+V 
Sbjct: 72  RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 131

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T++ ++D   + G +  AM L+  M+SK  +P IVTY+++L GLC+ G   +A E+   M
Sbjct: 132 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 191

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
              G+ PD   +  +I  FC +G+ +EA     EM   GI P+ +++S  I +       
Sbjct: 192 DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR---- 247

Query: 383 LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
             +   + A      MR   +  D + Y+ +I  FC+ G +  + R+ DE+V  GCLPD 
Sbjct: 248 --RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDV 305

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T++ ++  L   R++  A  LL
Sbjct: 306 VTYNTLLNGLCKERRLLDAEGLL 328



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 120/267 (44%), Gaps = 15/267 (5%)

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           G CR       +E+   +   + +P    +  LI    QS+   EA   F  +    V  
Sbjct: 6   GACR-------REIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPI 58

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
                ++L+  L + G    A +  +++ S     N  T + +++  CK  +  +   ++
Sbjct: 59  PAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVI 118

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
             M+ + + PD   +  ++      G  + A   +D MV  G+ P  +T+       N+V
Sbjct: 119 SEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTY-------NSV 171

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           ++GLC++   ++A++V+  M +  ++ D  +++ LI  FC+ G+I ++ +I  E+   G 
Sbjct: 172 LKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGI 231

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
            PD  ++S ++     R KM  A   L
Sbjct: 232 KPDLVSFSCLIGLFARRGKMDHAMAYL 258


>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 484

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/476 (29%), Positives = 235/476 (49%), Gaps = 46/476 (9%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGSKKSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKA--LCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           +A R++  M   GI+P   + NV+I    LC   G ++ A + F +M  R  +PD  TY 
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFLC---GKVETANRFFEDMKXREISPDVITYN 189

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           T+ING  R+ KI EA++ F EM+ +   PTVVTYT+LI G      V++A+ L EEM+  
Sbjct: 190 TMINGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEEMKGF 249

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQE 314
           G++PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++G CK G L  
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEASGILKEMVDKYIAPKDNSIFLRLISGQCKAGNLDA 309

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A ++L  M    +  +AG YG +I  +C  G Y++A   LD+++   I   R   SLH+ 
Sbjct: 310 AADVLKAMIRLSVPTEAGHYGVLIENYCKAGDYEKAIKLLDKLIEKDIVL-RPQSSLHME 368

Query: 375 --IHNTVVQGLCKT-----------------------------------DPNRAFQVYLS 397
              +N +V+ LC                                      P+ AF++   
Sbjct: 369 PSAYNPLVEYLCNNGQTAKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKI 428

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           M  R I  +  +Y SL+  + KK +   +   +D ++ +G LPD   + +VM +L+
Sbjct: 429 MLRRKIDSEKSSYDSLVQSYLKKSEPADAKAALDSMIENGHLPDSSLFRSVMESLF 484



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDLWVLMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ +LF++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M  +   P+++TY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLCGKVETANRFFEDMKXREISPDVITYNTMINGYYRVKKIEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   L+EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISV-DSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +  + A  +   M ++ I+  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEASGILKEMVDKYIAPKDNSIFLRLISGQCKAGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++          +A     ++L++K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENYCKAGDYEKA-----IKLLDKLIEKDIVLRPQ 362


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/436 (30%), Positives = 228/436 (52%), Gaps = 14/436 (3%)

Query: 34  IFDSATAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLS 90
           + +SA  E ++ G   D  TF+ +I  L  A Q R A  +L+ ++   CD+  D   F +
Sbjct: 179 LLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSS--CDVAPDETTFTT 236

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G+        A+R+  +M E GC PT  +   ++    +  ++  A  + +     G
Sbjct: 237 LMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADG 296

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
            +P   + +  +  LC+N G +D A K+   M   GC PD YTY T+IN LC  G++ EA
Sbjct: 297 FEPDRVTFSTFVNGLCQN-GHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEA 355

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           K +  +M    C P   T+ +LI  LC    +EEA+ L  E+  KG+ PNV+T++ L++ 
Sbjct: 356 KGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINA 415

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LCK G    A+ L + M S    P+ VTY+ L++ LC  GKL +A+++L  M++ G    
Sbjct: 416 LCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQS 475

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              Y  II   C   + +EA    D+M + GI  N +T+       NT++ GLC  +  +
Sbjct: 476 TVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITF-------NTLIDGLCNAERID 528

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A ++   M +  +  +++TY+S++T +CK+G+I K+A I+  +  +G   D  T++ ++
Sbjct: 529 DAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLI 588

Query: 450 TALWDRRKMRQAAELL 465
             L   R+ + A +LL
Sbjct: 589 NGLCKARRTQAALKLL 604



 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 211/416 (50%), Gaps = 10/416 (2%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           E A+GF  D  TFS  ++ L        A  +L  + +E C+     + ++         
Sbjct: 292 EIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGE 351

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A  + ++M + GC P   ++ T++  L  ENQL+ A    R +   G+ P V + N+
Sbjct: 352 LEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNI 411

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI ALCK  G    A ++F EM + GCTPD  TY  LI+ LC  GK+ +A +L KEME  
Sbjct: 412 LINALCK-VGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVS 470

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C  + VTY ++I+GLC+ + +EEA  +F++M   G+  N  T+++L+DGLC       A
Sbjct: 471 GCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDA 530

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            EL+  MIS+  +PN VTY+++L   CK+G + +A +IL  M   G + D   Y  +I+ 
Sbjct: 531 AELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLING 590

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMR 399
            C   + Q A   L  M + G+ P         + +N V+Q L + +  R A  ++  M 
Sbjct: 591 LCKARRTQAALKLLRGMRMKGMKPTP-------KAYNPVIQSLFRGNNGRDALSLFREMT 643

Query: 400 NRSISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
                 D+ TY  +    C+ G  I ++   + E+  +G +P+  ++  +   L +
Sbjct: 644 EVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLN 699



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 215/418 (51%), Gaps = 9/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D +TF+ ++   V       A  L  R+++  C  T      +  GY ++ R  DA+   
Sbjct: 230 DETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYI 289

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +    G EP   ++ T +  L +   +  A +    M + G +P V + + +I  LC N
Sbjct: 290 QQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLC-N 348

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G ++ A  I  +M + GC PD+ T+ TLI  LC   ++ EA +L +E+  K  SP V T
Sbjct: 349 NGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYT 408

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  LIN LC+      A+RLFEEM+S G  P+  TY+ L+D LC  G  ++A++LL+ M 
Sbjct: 409 FNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEME 468

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                 + VTY+T+++GLCK  +++EA E+ D+M + G+  +A  +  +I   C+  +  
Sbjct: 469 VSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERID 528

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
           +AA  +D+M+  G+ PN +T+       N+++   CK  + ++A  +  +M      VD 
Sbjct: 529 DAAELVDQMISEGLQPNNVTY-------NSILTHYCKQGNISKAADILQTMTANGFEVDV 581

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY++LI   CK      + +++  + + G  P    ++ V+ +L+     R A  L 
Sbjct: 582 VTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLF 639



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 182/416 (43%), Gaps = 45/416 (10%)

Query: 101 PLDAMRVFDKM--KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           P  A+R+ +    ++ G  P+   Y  ++  L       L       MR  G +  +  +
Sbjct: 69  PEAALRMLNSALARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLV 128

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
              I +  +     DA   +  ++   G   ++  Y  L+  L    KI   +  + EM 
Sbjct: 129 QSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMS 188

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           ++   P VVT+ ++I+ LC+++    A+ + EEM S  V P+  T+++LM+G  + G   
Sbjct: 189 SQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIE 248

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCK------------------------------ 308
            A+ L   M      P  VT + L+NG CK                              
Sbjct: 249 AALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFV 308

Query: 309 -----EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
                 G +  A+++L  M  +G +PD   Y  +I+C C+ G+ +EA   +++MV  G  
Sbjct: 309 NGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCL 368

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           P+  T+       NT++  LC  +    A  +   +  + +S +  T++ LI   CK GD
Sbjct: 369 PDTTTF-------NTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGD 421

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            H + R+ +E+   GC PDE T++ ++  L    K+ +A +LL    ++ C ++ V
Sbjct: 422 PHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTV 477



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 4/185 (2%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           L  AE+ ++ A  + D   +E   G + +N T++ +++          A D+L  +    
Sbjct: 521 LCNAER-IDDAAELVDQMISE---GLQPNNVTYNSILTHYCKQGNISKAADILQTMTANG 576

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
            ++    + ++  G  +  R   A+++   M+  G +PTPK+Y  V+  L   N  + A 
Sbjct: 577 FEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDAL 636

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
             +R M E+G  P   +  ++ + LC+  G +  AF    EM + G  P+  ++  L  G
Sbjct: 637 SLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEG 696

Query: 201 LCRLG 205
           L  LG
Sbjct: 697 LLNLG 701


>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
          Length = 422

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 202/375 (53%), Gaps = 11/375 (2%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           + ++V +LI ++ D   A  IFD A+ +    F+H  S+F ++I KL  A QF   +DLL
Sbjct: 13  SPSRVQKLIASQSDPLLAKEIFDLASLQ--PNFKHSYSSFHILILKLGWARQFSLMQDLL 70

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV-E 132
            R+  E+  I   +F  I   YG  + P  A++ F  M +F  +P PK    +L +LV  
Sbjct: 71  MRLKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPLPKHLNXLLQLLVSH 130

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            N ++ AF  ++     G+ P   S N+L+ A C N G +  A+ +F +M  R   PD  
Sbjct: 131 RNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFN-GDLSIAYTLFNQMFKRDVAPDVE 189

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +Y  L+ GLCR  ++  A +L ++M  K   P  ++YT+L+N LC+ K ++EA +L   M
Sbjct: 190 SYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRM 249

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           + KG  P++  Y++++ G C+ G    A ++L+ M S    PN+++Y TL++GLC +G  
Sbjct: 250 KVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLY 309

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA   ++ M  +G  P   ++  +I+ FC++GK +EA   L EM+  G   +  TW   
Sbjct: 310 DEAKNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHTETWV-- 367

Query: 373 IRIHNTVVQGLCKTD 387
                 ++  +C+ D
Sbjct: 368 -----AIIPRICEVD 377



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 95/191 (49%), Gaps = 25/191 (13%)

Query: 283 LLQMMISKR-------------HR----PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           LLQ+++S R             HR    P+  +Y+ L++  C  G L  A  + ++M  +
Sbjct: 123 LLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKR 182

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC- 384
            + PD   Y  ++   C   +   A + L++M+  G  P+ L+++       T++  LC 
Sbjct: 183 DVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYT-------TLLNSLCR 235

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           K     A+++   M+ +  + D + Y+++I  FC++G    + ++++++  +GC P+  +
Sbjct: 236 KKKLKEAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMS 295

Query: 445 WSAVMTALWDR 455
           +  +++ L D+
Sbjct: 296 YGTLVSGLCDQ 306



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 13/209 (6%)

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           MRL  E  S  + P++F  S +++   +     QA++    M+    +P     + LL  
Sbjct: 71  MRLKSEQYS--INPSLF--SDIIEIYGEANLPDQALKTFHSMLQFHSKPLPKHLNXLLQL 126

Query: 306 LCKE-GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           L      ++ A ++       G+ PD   Y  ++S FC  G    A    ++M    + P
Sbjct: 127 LVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAP 186

Query: 365 NRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           +       +  +  ++QGLC K+  NRA  +   M N+    D+L+Y++L+   C+K  +
Sbjct: 187 D-------VESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKL 239

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            ++ +++  + + GC PD   ++ V+   
Sbjct: 240 KEAYKLLCRMKVKGCNPDIVHYNTVILGF 268


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 222/438 (50%), Gaps = 34/438 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNK--EKCDITEDIFLSICRGYGRVHRPL 102
           G+  +  TFS +I+ L    +   A +L+DR+ +   K D+      ++  G     +  
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLIT--INTLVNGLCLSGKEA 210

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM + DKM E+GC+P   +Y  VL ++ +  Q  LA    R M E  I+      +++I
Sbjct: 211 EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 270

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK+ G++D AF +F EM  +G T +  TY  LI G C  G+  +  +L ++M  +  
Sbjct: 271 DGLCKH-GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI 329

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P VVT++ LI+   +   + EA  L +EM  +G+ P+  TY+SL+DG CK     +A +
Sbjct: 330 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQ 389

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           ++ +M+SK   PNI T++ L+NG CK  ++ + +E+  +M L+G+  D   Y  +I  FC
Sbjct: 390 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 449

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTW----------------------------SLHIR 374
           ++GK   A     EMV   + PN +T+                             L I 
Sbjct: 450 ELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIG 509

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           I+N ++ G+C     + A+ ++ S+  + +     TY+ +I   CKKG + ++  +  ++
Sbjct: 510 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 569

Query: 434 VLDGCLPDEGTWSAVMTA 451
             DG  PD  T++ ++ A
Sbjct: 570 EEDGHAPDGWTYNILIRA 587



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 193/363 (53%), Gaps = 7/363 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M      PT   +  + + + +  Q  L     + M   GI   + +L+++I
Sbjct: 71  DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMI 130

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  AF    ++   G  P++ T+ TLINGLC  G++ EA EL   M     
Sbjct: 131 NCFCR-CRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 189

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P ++T  +L+NGLC S    EAM L ++M   G +PN  TY  +++ +CK G ++ AME
Sbjct: 190 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAME 249

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M  +  + + V YS +++GLCK G L  A  + + M+++G+  +   Y  +I  FC
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC 309

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           + G++ + A  L +M+   I PN +T+S  + I + V +G  +     A +++  M +R 
Sbjct: 310 NAGRWDDGAKLLRDMIKRKINPNVVTFS--VLIDSFVKEGKLR----EAEELHKEMIHRG 363

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I+ D++TY+SLI  FCK+  + K+ ++VD +V  GC P+  T++ ++       ++    
Sbjct: 364 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGL 423

Query: 463 ELL 465
           EL 
Sbjct: 424 ELF 426



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 178/368 (48%), Gaps = 11/368 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D   +S++I  L        A +L + +  E   IT +I  +  +  G+    R  D  +
Sbjct: 262 DAVKYSIIIDGLCKHGSLDNAFNLFNEM--EMKGITTNIITYNILIGGFCNAGRWDDGAK 319

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +   M +    P   ++  ++   V+E +L+ A   ++ M   GI P   +   LI   C
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 379

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +  +D A ++   M ++GC P+  T+  LING C+  +I +  ELF++M  +      
Sbjct: 380 KEN-HLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VTY +LI G C+   +  A  LF+EM S+ V PN+ TY  L+DGLC  G S +A+E+ + 
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEK 498

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +   +   +I  Y+ +++G+C   K+ +A ++   + L+G+KP    Y  +I   C  G 
Sbjct: 499 IEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGP 558

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVD 406
             EA     +M   G  P+  T+++ IR H      L   D  ++ ++   ++    SVD
Sbjct: 559 LSEAELLFRKMEEDGHAPDGWTYNILIRAH------LGDGDATKSVKLIEELKRCGFSVD 612

Query: 407 SLTYSSLI 414
           + T   +I
Sbjct: 613 ASTIKMVI 620



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 167/336 (49%), Gaps = 9/336 (2%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A   +R M      P V   + L  A+ K +   D    + ++M  +G   + YT   +I
Sbjct: 72  AIDLFRDMIHSRPLPTVIDFSRLFSAIAK-TKQYDLVLALCKQMELKGIAHNLYTLSIMI 130

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           N  CR  K+  A     ++      P  +T+++LINGLC    V EA+ L + M   G +
Sbjct: 131 NCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK 190

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P++ T ++L++GLC  G  ++AM L+  M+    +PN VTY  +LN +CK G+   A+E+
Sbjct: 191 PDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 250

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L +M+ + +K DA  Y  II   C  G    A N  +EM + GIT N +T+       N 
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITY-------NI 303

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ G C     +   ++   M  R I+ + +T+S LI  F K+G + ++  +  E++  G
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 363

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             PD  T+++++        + +A +++ L +   C
Sbjct: 364 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC 399



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 154/293 (52%), Gaps = 8/293 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +FR+M +    P    +  L + + +  +      L K+ME K  +  + T + +
Sbjct: 70  DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 129

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+ + +  A     ++   G EPN  T+S+L++GLC  G  S+A+EL+  M+   H
Sbjct: 130 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 189

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P+++T +TL+NGLC  GK  EA+ ++D+M   G +P+A  YG +++  C  G+   A  
Sbjct: 190 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAME 249

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
            L +M    I  + + +S+       ++ GLCK    + AF ++  M  + I+ + +TY+
Sbjct: 250 LLRKMEERNIKLDAVKYSI-------IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYN 302

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            LI  FC  G     A+++ +++     P+  T+S ++ +     K+R+A EL
Sbjct: 303 ILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEEL 355



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 39/339 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++++I    +A ++     LL  + K K +     F  +   + +  +  +A  +  +M
Sbjct: 300 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P   +Y +++    +EN L  A +    M   G  P + + N+LI   CK +  
Sbjct: 360 IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCK-ANR 418

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D   ++FR+M  RG   D+ TY TLI G C LGK+  AKELF+EM ++   P +VTY  
Sbjct: 419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478

Query: 232 LINGLCQSKSVEEAMRLFEEMRS-----------------------------------KG 256
           L++GLC +   E+A+ +FE++                                     KG
Sbjct: 479 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 538

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           V+P V TY+ ++ GLCK G  S+A  L + M    H P+  TY+ L+     +G   ++V
Sbjct: 539 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSV 598

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           ++++ +K  G   DA     +I    D G+ +++  FLD
Sbjct: 599 KLIEELKRCGFSVDASTIKMVIDMLSD-GRLKKS--FLD 634



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 34/275 (12%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I      N    A  ++D +  + CD     F  +  GY + +R  D 
Sbjct: 363 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 422

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F KM   G      +Y T++    E  +L +A   ++ M    + P + +  +L+  
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482

Query: 165 LCKN----------------------------------SGTMDAAFKIFREMPNRGCTPD 190
           LC N                                  +  +D A+ +F  +P +G  P 
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 542

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY  +I GLC+ G + EA+ LF++ME    +P   TY  LI          ++++L E
Sbjct: 543 VKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 602

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           E++  G   +  T   ++D L  G      +++L 
Sbjct: 603 ELKRCGFSVDASTIKMVIDMLSDGRLKKSFLDMLS 637


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 211/409 (51%), Gaps = 9/409 (2%)

Query: 58  SKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE 117
           SK ++ N    A  L +R+ + +   +   F  +     R+      + ++ +M  FG  
Sbjct: 27  SKSLNVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIP 86

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
               +   ++      N+L  AF     + ++G QP  A+   LI+ LC   G +  A +
Sbjct: 87  HNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCV-EGKIGEALQ 145

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +F +M   G  PD  TYGTLINGLC++G    A    + ME + C PTVV Y+++I+ LC
Sbjct: 146 LFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLC 205

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + + + EA+ LF +M +KG+ PN FTYSSL+ GLC  G   +A+ L   MI ++  P+ +
Sbjct: 206 KDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQL 265

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           T++TL++ LCKEG + +A  ++D M    LKPD   Y  ++   C   +  +  N  D M
Sbjct: 266 TFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTM 325

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITC 416
           V  G  P+ ++++       T++ G CK    ++A  ++  M  + +  D++TY++LI  
Sbjct: 326 VRKGCVPSVISYT-------TLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHG 378

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            C  G +  +  +  E+V+ G +PD  T+  +   L    ++ +A  LL
Sbjct: 379 LCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLL 427



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 223/450 (49%), Gaps = 30/450 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H+  T +++I+     N+   A  +L  + K     +   F ++ RG     +  +A
Sbjct: 84  GIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEA 143

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++FDKM   G +P   +Y T++  L +      A RF R M +   +P V   + +I +
Sbjct: 144 LQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDS 203

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+   +  A  +F +M  +G +P+++TY +LI+GLC LG   EA  LF  M  +   P
Sbjct: 204 LCKDR-QLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMP 262

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +T+ +L++ LC+   V +A  + + M    ++P+V TY+SLMDG C      + + + 
Sbjct: 263 DQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVF 322

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+ K   P++++Y+TL+NG CK   + +A+ + + M  QGL PD   Y  +I   C +
Sbjct: 323 DTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHV 382

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRIH 376
           G+ ++A     EMV+ G  P+ +T+ +                             I I+
Sbjct: 383 GRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIY 442

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           + V+ G+C+  +   A  ++  + ++ +  D  TY+ +I   C++G + +++++  E+  
Sbjct: 443 SIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDE 502

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +GC P+  T++ +        +  +A +L 
Sbjct: 503 NGCSPNACTYNLITRGFLRNNETLRAIQLF 532



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 208/467 (44%), Gaps = 48/467 (10%)

Query: 6   MFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           + K   + ++A    LIR    E  + +AL +FD  T E   GF+ D  T+  +I+ L  
Sbjct: 115 ILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGE---GFQPDVLTYGTLINGLCK 171

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
                 A   L  + +  C  T  ++ +I     +  +  +A+ +F  M   G  P   +
Sbjct: 172 VGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFT 231

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF------ 176
           Y +++  L      K A R +  M    I P   + N L+ ALCK    + A +      
Sbjct: 232 YSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMI 291

Query: 177 ----------------------------KIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
                                        +F  M  +GC P   +Y TLING C++  + 
Sbjct: 292 QSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMD 351

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A  LF+EM  +   P  VTY +LI+GLC    + +A+ LF EM   G  P++ TY  L 
Sbjct: 352 KAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILF 411

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           D LCK    ++AM LL+++      P+I  YS +++G+C+ G+L+ A ++  ++  +GL 
Sbjct: 412 DYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLH 471

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           PD   Y  +I+  C  G   EA+    EM   G +PN  T+       N + +G  + + 
Sbjct: 472 PDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTY-------NLITRGFLRNNE 524

Query: 389 N-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             RA Q++  M +R  S+D  T + L+      G      +I+ E V
Sbjct: 525 TLRAIQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQILCEFV 571



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 150/312 (48%), Gaps = 8/312 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N  T+D A  +F  M      P    +  L+  + R+        L+K+M++        
Sbjct: 31  NVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTY 90

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T   LIN  C    +  A  +  ++   G +P+  T+++L+ GLC  G   +A++L   M
Sbjct: 91  TLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKM 150

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
             +  +P+++TY TL+NGLCK G    A+  L  M+ +  +P   +Y  II   C   + 
Sbjct: 151 TGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQL 210

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            EA +   +M+  GI+PN  T+S       +++ GLC       A +++ +M +R I  D
Sbjct: 211 TEALSLFSDMLAKGISPNNFTYS-------SLIHGLCILGHWKEAIRLFYAMIHRKIMPD 263

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            LT+++L+   CK+G + K+  +VD ++     PD  T++++M     R +M +   +  
Sbjct: 264 QLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFD 323

Query: 467 LELMNKCVEAEV 478
             +   CV + +
Sbjct: 324 TMVRKGCVPSVI 335


>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 235/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K+   AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSAKNSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV++      SG ++ A + F +M +R   PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMMWGFFL-SGKVETANRFFEDMKSREIMPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           +NG CR+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+R  EEM+  G+
Sbjct: 192 VNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRFVEEMKGFGM 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++G CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISGQCKAGDLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
            +L  M    +  +AG YG +I  +C  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 NVLKAMIRLSVPTEAGHYGVLIENYCKAGEYDKAIKLLDKVIEKDIIL-RPQSTLHMESS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPLIEYLCNNGQTAKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +D ++ +G LPD   + +VM +L+
Sbjct: 431 RRKVDSEQSAYDSLVQSYLKKNEPADAKAALDSMIENGHLPDSSLFRSVMESLF 484



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 118/248 (47%), Gaps = 9/248 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   +++++ Q M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y  L   + + G+   A    ++M  +G++P    +  ++  F   GK 
Sbjct: 107 EELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A  F ++M    I P+ +T+       NT+V G C+      A + ++ M+ R+I   
Sbjct: 167 ETANRFFEDMKSREIMPDVVTY-------NTMVNGYCRVKKMEEAEKYFVEMKGRNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY++LI  +     +  + R V+E+   G  P+  T+S ++  L +  KM +A   +L
Sbjct: 220 VVTYTTLIKGYVSVDRVDDALRFVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARS-IL 278

Query: 467 LELMNKCV 474
            E+++K +
Sbjct: 279 KEMVDKYI 286


>gi|255660936|gb|ACU25637.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 484

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 233/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGSKKSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDVLFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + N++I      SG ++ A + F +M +R  TPD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNIMIWGFFL-SGKVETANRFFEDMKSRXITPDVITYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVT T+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTXTTLIKGYVSVDRVDDALRLXEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A   L+ M+ K   P +   +  L++G CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSXLKEMVDKYIAPTDNSIFLRLISGQCKAGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI- 375
           ++L  M    +  +AG YG +I  +C  G+Y +A N LD+++   I   R   +LH+   
Sbjct: 312 DVLQAMIRLSVPTEAGHYGVLIENYCKAGQYDKAINLLDKLIEKDIIL-RPQSTLHMEXI 370

Query: 376 -HNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPLIEYLCNNGRTAKAETLVRQLMKLGVQDSIALNTLILGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R I      Y SL+  + KK +   +   +D ++ +G LPD   + +VM +L+
Sbjct: 431 RRKIDSAKSAYDSLVQSYLKKNEPADAKAALDSMIENGHLPDSSLFRSVMESLF 484


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 213/380 (56%), Gaps = 13/380 (3%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+ +G  +V R   A+    KM   G  P   +Y  V+  L  EN+L  A +F   M 
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMA 73

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              + P V +  VLI  LCK  G +D A  +  +M  + C P + TY +LI+GLC+  + 
Sbjct: 74  NRNLTPNVVTYTVLIDGLCK-GGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERA 131

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA +L +EM    C P + TYT+LI G C+SK  ++A+R+FE++ ++G  P+V TYS L
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCL 191

Query: 268 MDGLCKGGCSSQAMELLQMMI-SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           +DGLCK G   +A++L   MI S    PN VTY++L++G C+ GK+ EA+ +L+RM   G
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             PD   Y  +++ FC + +  +A + L++M   G+TP+ +T++       +++ GLC+ 
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFT-------SLMDGLCRE 304

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
           +  + A  +   MR +S S    TY++++  +C+   + ++ + + E +   C P+  ++
Sbjct: 305 NRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM--DCPPNVVSF 362

Query: 446 SAVMTALWDRRKMRQAAELL 465
           + ++  L    +  +A EL+
Sbjct: 363 NIMIRGLCKVNRSSEAMELV 382



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 216/417 (51%), Gaps = 18/417 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++++I  L    +   A  LL ++ K KC  T   + S+  G  +  R  +A  + ++M
Sbjct: 83  TYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERASEAYDLLEEM 141

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P   +Y T++    +  +   A R +  +   G +P V + + LI  LCK  G 
Sbjct: 142 VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCK-EGR 200

Query: 172 MDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           +  A  +F  M   G C P++ TY +LI+G CR+GK+ EA  L + M     SP VVTYT
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +L+NG C+   +++A  L  +M  KG+ P+V T++SLMDGLC+    S A+ +L  M  K
Sbjct: 261 TLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P + TY+T+L+G C+  +L+EA + +  ++     P+   +  +I   C + +  EA
Sbjct: 321 SCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEA 378

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV-DSL 408
              ++E         R   +  + ++ TV+ GLC+    + A +VY  M      + +S+
Sbjct: 379 MELVEE-------ARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSI 431

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TYS+LIT  C  G + ++   +++    GC+P+ GT++ ++ A     +   A ELL
Sbjct: 432 TYSTLITGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELL 484



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 180/365 (49%), Gaps = 21/365 (5%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           +  +F ++T IT           K  + AL +F+   A    GFR D  T+S +I  L  
Sbjct: 147 IPDIFTYTTLITG------FCKSKKSDDALRVFEQLVAR---GFRPDVVTYSCLIDGLCK 197

Query: 63  ANQFRPAEDLLDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
             + + A DL  R+ K   C      + S+  G+ R+ +  +AM + ++M E G  P   
Sbjct: 198 EGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVV 257

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           +Y T++    +  +L  A+     M   G+ P V +   L+  LC+ +   DA   I  E
Sbjct: 258 TYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAV-HILGE 316

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  + C+P  YTY T+++G CR  ++ EA++    +E   C P VV++  +I GLC+   
Sbjct: 317 MRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNR 374

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYS 300
             EAM L EE R +   P+V  Y++++DGLC+     +A  + + M+ +    PN +TYS
Sbjct: 375 SSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYS 434

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV-- 358
           TL+ GLC  G L  A   +++    G  P+ G Y  +I  F    + ++A   LD+MV  
Sbjct: 435 TLITGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490

Query: 359 -LGGI 362
             GG+
Sbjct: 491 GFGGV 495



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 157/281 (55%), Gaps = 10/281 (3%)

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           C+ D  TY +LI GLC++ ++ +A     +M +K   P V TYT++I+ LC    + EA 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
           +  EEM ++ + PNV TY+ L+DGLCKGG   +A+ LL  M  K+  P  VTY++L++GL
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGL 125

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CK  +  EA ++L+ M   G  PD   Y  +I+ FC   K  +A    +++V  G  P+ 
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 367 LTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM-RNRSISVDSLTYSSLITCFCKKGDIH 424
           +T+S        ++ GLCK      A  ++  M ++ S   +++TY+SLI+ FC+ G + 
Sbjct: 186 VTYS-------CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 238

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++  +++ +   G  PD  T++ +M       ++  A +LL
Sbjct: 239 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 279



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 144/249 (57%), Gaps = 10/249 (4%)

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           T +CS   VTYTSLI GLC+ K +E+A+    +M SKG  P+V+TY++++  LC      
Sbjct: 4   TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLH 63

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A + L+ M ++   PN+VTY+ L++GLCK G++ EAV +L +M+ + + P A  Y  +I
Sbjct: 64  EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLI 122

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
           S  C   +  EA + L+EMV  G  P+  T++       T++ G CK+   + A +V+  
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYT-------TLITGFCKSKKSDDALRVFEQ 175

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-CLPDEGTWSAVMTALWDRR 456
           +  R    D +TYS LI   CK+G + ++  +   ++  G C+P+  T++++++      
Sbjct: 176 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 235

Query: 457 KMRQAAELL 465
           KM +A  LL
Sbjct: 236 KMDEAMNLL 244



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 42/189 (22%)

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           M+ +     + VTY++L+ GLCK  +L++A+  L +M  +G  PD   Y  +I   C   
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
           +  EA  FL+EM                                          NR+++ 
Sbjct: 61  RLHEARKFLEEMA-----------------------------------------NRNLTP 79

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +TY+ LI   CK G + ++  ++ ++    C+P   T++++++ L    +  +A +LL
Sbjct: 80  NVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERASEAYDLL 138

Query: 466 LLELMNKCV 474
              + + C+
Sbjct: 139 EEMVYSGCI 147


>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
           [Vitis vinifera]
          Length = 763

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 143/506 (28%), Positives = 247/506 (48%), Gaps = 48/506 (9%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   ++ + AL  F     E A  FRHD  T   +I  L  A++   A  +L  + 
Sbjct: 122 VWNVLHGSRNSDHALQFF--RWVERAGLFRHDRDTHLKIIEILGRASKLNHARCILLDMP 179

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+F+ +   YG+     ++++VF KMKE G E T KSY  +  +++   +  
Sbjct: 180 KKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYM 239

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   G+ P   + N++I      S  ++ A + F EM  R  +PD  TY T+
Sbjct: 240 MAKRYFNAMLNEGVMPTCHTYNIMIWGFFL-SLKVETANRFFEEMKERRISPDVVTYNTM 298

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTV++YT++I G      V++ +RLFEEM+S G+
Sbjct: 299 INGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGI 358

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC G    +A  +++ M+ +   P +   +  L+   CK G+L  A 
Sbjct: 359 KPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAA 418

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT--PNRLTWSLHIR 374
           ++L  M    +  +AG YG +I  FC  G Y  A   LD+++   I   P   +  +   
Sbjct: 419 DVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQN-SLEMESS 477

Query: 375 IHNTVVQGLCKTD-----------------------------------PNRAFQVYLSMR 399
            +N +++ LC +                                    P  AF++   M 
Sbjct: 478 GYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNLIRGHSKEGAPESAFEILKIMG 537

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            R +  ++  Y  LI  F KKG+   +   +D ++ +G +PD   + +VM +L++  +++
Sbjct: 538 RREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQ 597

Query: 460 QAAELLLLELMNKCVEAEVDIQNQDV 485
            A+      +MN  VE  V  +N D+
Sbjct: 598 TAS-----RVMNNMVEKGVK-ENMDL 617



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 153/361 (42%), Gaps = 46/361 (12%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ MI+      +   AE     +     + T   + ++ +GY  V R  D +R+F
Sbjct: 291 DVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLF 350

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV-LIKALCK 167
           ++MK FG +P   +Y T+L  L +  ++  A    + M E  I P   S+ + LI   CK
Sbjct: 351 EEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCK 410

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK------- 220
            +G +DAA  + + M       ++  YG LI   C+ G    A +L  ++  K       
Sbjct: 411 -AGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQ 469

Query: 221 -ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
            +       Y  +I  LC S    +A  LF ++  KGV+  +  +++L+ G  K G    
Sbjct: 470 NSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPI-AFNNLIRGHSKEGAPES 528

Query: 280 AMELLQMM-----------------------------------ISKRHRPNIVTYSTLLN 304
           A E+L++M                                   I   H P+   + +++ 
Sbjct: 529 AFEILKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVME 588

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
            L ++G++Q A  +++ M  +G+K +  L  KI+      G  +EA   +D ++  G  P
Sbjct: 589 SLFEDGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALGRIDLLMNNGCEP 648

Query: 365 N 365
           +
Sbjct: 649 D 649



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 140/335 (41%), Gaps = 26/335 (7%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           DNS F  +I+    A Q   A D+L  + +         +  +   + +      A+++ 
Sbjct: 397 DNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLL 456

Query: 109 DKM--KEFGCEPT------PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           DK+  KE    P          Y  ++  L    Q   A   +R + + G+Q  +A  N 
Sbjct: 457 DKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIA-FNN 515

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI+   K  G  ++AF+I + M  R    ++  Y  LI    + G+  +AK     M   
Sbjct: 516 LIRGHSK-EGAPESAFEILKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIEN 574

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P    + S++  L +   ++ A R+   M  KGV+ N+   + +++ L   G   +A
Sbjct: 575 GHIPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEA 634

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL----YGK 336
           +  + ++++    P+   +  LL+ LC +GK   A+++LD     GL+ D  +    Y  
Sbjct: 635 LGRIDLLMNNGCEPD---FDGLLSVLCAKGKTIAALKLLDF----GLERDYNISFSSYEN 687

Query: 337 IISCFCDIGKYQEAANFL-DEMVLGGITPNRLTWS 370
           ++      GK   A + L   M  GG T     WS
Sbjct: 688 VLDALLTAGKTLNAYSILCKIMQKGGAT----DWS 718


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/380 (32%), Positives = 213/380 (56%), Gaps = 13/380 (3%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+ +G  +V R   A+    KM   G  P   +Y  V+  L  EN+L  A +F   M 
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMA 73

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              + P V +  VLI  LCK  G +D A  +  +M  + C P + TY +LI+GLC+  + 
Sbjct: 74  NRNLTPNVVTYTVLIDGLCK-GGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERA 131

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA +L +EM    C P + TYT+LI G C+SK  ++A+R+FE++ ++G  P+V TYS L
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCL 191

Query: 268 MDGLCKGGCSSQAMELLQMMI-SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           +DGLCK G   +A++L   MI S    PN VTY++L++G C+ GK+ EA+ +L+RM   G
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             PD   Y  +++ FC + +  +A + L++M   G+TP+ +T++       +++ GLC+ 
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFT-------SLMDGLCRE 304

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
           +  + A  +   MR +S S    TY++++  +C+   + ++ + + E +   C P+  ++
Sbjct: 305 NRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM--DCPPNVVSF 362

Query: 446 SAVMTALWDRRKMRQAAELL 465
           + ++  L    +  +A EL+
Sbjct: 363 NIMIRGLCKVNRSSEAMELV 382



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 216/417 (51%), Gaps = 18/417 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++++I  L    +   A  LL ++ K KC  T   + S+  G  +  R  +A  + ++M
Sbjct: 83  TYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERASEAYDLLEEM 141

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P   +Y T++    +  +   A R +  +   G +P V + + LI  LCK  G 
Sbjct: 142 VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCK-EGR 200

Query: 172 MDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           +  A  +F  M   G C P++ TY +LI+G CR+GK+ EA  L + M     SP VVTYT
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +L+NG C+   +++A  L  +M  KG+ P+V T++SLMDGLC+    S A+ +L  M  K
Sbjct: 261 TLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P + TY+T+L+G C+  +L+EA + +  ++     P+   +  +I   C + +  EA
Sbjct: 321 SCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEA 378

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV-DSL 408
              ++E         R   +  + ++ TV+ GLC+    + A +VY  M      + +S+
Sbjct: 379 MELVEE-------ARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSI 431

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TYS+L+T  C  G + ++   +++    GC+P+ GT++ ++ A     +   A ELL
Sbjct: 432 TYSTLVTGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELL 484



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 178/362 (49%), Gaps = 18/362 (4%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           +  +F ++T IT           K  + AL +F+   A    GFR D  T+S +I  L  
Sbjct: 147 IPDIFTYTTLITG------FCKSKKSDDALRVFEQLVAR---GFRPDVVTYSCLIDGLCK 197

Query: 63  ANQFRPAEDLLDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
             + + A DL  R+ K   C      + S+  G+ R+ +  +AM + ++M E G  P   
Sbjct: 198 EGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVV 257

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           +Y T++    +  +L  A+     M   G+ P V +   L+  LC+ +   DA   I  E
Sbjct: 258 TYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAV-HILGE 316

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  + C+P  YTY T+++G CR  ++ EA++    +E   C P VV++  +I GLC+   
Sbjct: 317 MRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNR 374

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYS 300
             EAM L EE R +   P+V  Y++++DGLC+     +A  + + M+ +    PN +TYS
Sbjct: 375 SSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYS 434

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL+ GLC  G L  A   +++    G  P+ G Y  +I  F    + ++A   LD+MV  
Sbjct: 435 TLVTGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490

Query: 361 GI 362
           G 
Sbjct: 491 GF 492



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 157/281 (55%), Gaps = 10/281 (3%)

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           C+ D  TY +LI GLC++ ++ +A     +M +K   P V TYT++I+ LC    + EA 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
           +  EEM ++ + PNV TY+ L+DGLCKGG   +A+ LL  M  K+  P  VTY++L++GL
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGL 125

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CK  +  EA ++L+ M   G  PD   Y  +I+ FC   K  +A    +++V  G  P+ 
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 367 LTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM-RNRSISVDSLTYSSLITCFCKKGDIH 424
           +T+S        ++ GLCK      A  ++  M ++ S   +++TY+SLI+ FC+ G + 
Sbjct: 186 VTYS-------CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 238

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++  +++ +   G  PD  T++ +M       ++  A +LL
Sbjct: 239 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 279



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 144/249 (57%), Gaps = 10/249 (4%)

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           T +CS   VTYTSLI GLC+ K +E+A+    +M SKG  P+V+TY++++  LC      
Sbjct: 4   TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLH 63

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A + L+ M ++   PN+VTY+ L++GLCK G++ EAV +L +M+ + + P A  Y  +I
Sbjct: 64  EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLI 122

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
           S  C   +  EA + L+EMV  G  P+  T++       T++ G CK+   + A +V+  
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYT-------TLITGFCKSKKSDDALRVFEQ 175

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-CLPDEGTWSAVMTALWDRR 456
           +  R    D +TYS LI   CK+G + ++  +   ++  G C+P+  T++++++      
Sbjct: 176 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 235

Query: 457 KMRQAAELL 465
           KM +A  LL
Sbjct: 236 KMDEAMNLL 244



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 42/189 (22%)

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           M+ +     + VTY++L+ GLCK  +L++A+  L +M  +G  PD   Y  +I   C   
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
           +  EA  FL+EM                                          NR+++ 
Sbjct: 61  RLHEARKFLEEMA-----------------------------------------NRNLTP 79

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +TY+ LI   CK G + ++  ++ ++    C+P   T++++++ L    +  +A +LL
Sbjct: 80  NVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERASEAYDLL 138

Query: 466 LLELMNKCV 474
              + + C+
Sbjct: 139 EEMVYSGCI 147


>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
          Length = 772

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 143/506 (28%), Positives = 247/506 (48%), Gaps = 48/506 (9%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   ++ + AL  F     E A  FRHD  T   +I  L  A++   A  +L  + 
Sbjct: 122 VWNVLHGSRNSDHALQFF--RWVERAGLFRHDRDTHLKIIEILGRASKLNHARCILLDMP 179

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+F+ +   YG+     ++++VF KMKE G E T KSY  +  +++   +  
Sbjct: 180 KKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYM 239

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   G+ P   + N++I      S  ++ A + F EM  R  +PD  TY T+
Sbjct: 240 MAKRYFNAMLNEGVMPTCHTYNIMIWGFFL-SLKVETANRFFEEMKERRISPDVVTYNTM 298

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTV++YT++I G      V++ +RLFEEM+S G+
Sbjct: 299 INGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGI 358

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC G    +A  +++ M+ +   P +   +  L+   CK G+L  A 
Sbjct: 359 KPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAA 418

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT--PNRLTWSLHIR 374
           ++L  M    +  +AG YG +I  FC  G Y  A   LD+++   I   P   +  +   
Sbjct: 419 DVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQN-SLEMESS 477

Query: 375 IHNTVVQGLCKTD-----------------------------------PNRAFQVYLSMR 399
            +N +++ LC +                                    P  AF++   M 
Sbjct: 478 GYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNLIRGHSKEGAPESAFEILKIMG 537

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            R +  ++  Y  LI  F KKG+   +   +D ++ +G +PD   + +VM +L++  +++
Sbjct: 538 RREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQ 597

Query: 460 QAAELLLLELMNKCVEAEVDIQNQDV 485
            A+      +MN  VE  V  +N D+
Sbjct: 598 TAS-----RVMNNMVEKGVK-ENMDL 617



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 153/361 (42%), Gaps = 46/361 (12%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ MI+      +   AE     +     + T   + ++ +GY  V R  D +R+F
Sbjct: 291 DVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLF 350

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV-LIKALCK 167
           ++MK FG +P   +Y T+L  L +  ++  A    + M E  I P   S+ + LI   CK
Sbjct: 351 EEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCK 410

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK------- 220
            +G +DAA  + + M       ++  YG LI   C+ G    A +L  ++  K       
Sbjct: 411 -AGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQ 469

Query: 221 -ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
            +       Y  +I  LC S    +A  LF ++  KGV+  +  +++L+ G  K G    
Sbjct: 470 NSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPI-AFNNLIRGHSKEGAPES 528

Query: 280 AMELLQMM-----------------------------------ISKRHRPNIVTYSTLLN 304
           A E+L++M                                   I   H P+   + +++ 
Sbjct: 529 AFEILKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVME 588

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
            L ++G++Q A  +++ M  +G+K +  L  KI+      G  +EA   +D ++  G  P
Sbjct: 589 SLFEDGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEALGRIDLLMNNGCEP 648

Query: 365 N 365
           +
Sbjct: 649 D 649



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 140/335 (41%), Gaps = 26/335 (7%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           DNS F  +I+    A Q   A D+L  + +         +  +   + +      A+++ 
Sbjct: 397 DNSIFMRLITCQCKAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLL 456

Query: 109 DKM--KEFGCEPT------PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           DK+  KE    P          Y  ++  L    Q   A   +R + + G+Q  +A  N 
Sbjct: 457 DKLIEKEIILRPQNSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIA-FNN 515

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI+   K  G  ++AF+I + M  R    ++  Y  LI    + G+  +AK     M   
Sbjct: 516 LIRGHSK-EGAPESAFEILKIMGRREVPREADAYRLLIESFLKKGEPADAKTALDGMIEN 574

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P    + S++  L +   ++ A R+   M  KGV+ N+   + +++ L   G   +A
Sbjct: 575 GHIPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKENMDLVAKILEALLLRGHVEEA 634

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL----YGK 336
           +  + ++++    P+   +  LL+ LC +GK   A+++LD     GL+ D  +    Y  
Sbjct: 635 LGRIDLLMNNGCEPD---FDGLLSVLCAKGKTIAALKLLDF----GLERDYNISFSSYEN 687

Query: 337 IISCFCDIGKYQEAANFL-DEMVLGGITPNRLTWS 370
           ++      GK   A + L   M  GG T     WS
Sbjct: 688 VLDALLTAGKTLNAYSILCKIMQKGGAT----DWS 718


>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
 gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
 gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
 gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 757

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 244/501 (48%), Gaps = 41/501 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K +  AL  F     E +   RHD  T   MI  L   ++   A  +L  + 
Sbjct: 120 VYNVLHGAKKLEHALQFF--RWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMP 177

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           ++     ED+F+ +   YG+     +++++F KMK+ G E T KSY ++  +++   +  
Sbjct: 178 EKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYM 237

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   G++P   + N+++      S  ++ A + F +M  RG +PD  T+ T+
Sbjct: 238 MAKRYFNKMVSEGVEPTRHTYNLMLWGFFL-SLRLETALRFFEDMKTRGISPDDATFNTM 296

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING CR  K+ EA++LF EM+     P+VV+YT++I G      V++ +R+FEEMRS G+
Sbjct: 297 INGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGI 356

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           EPN  TYS+L+ GLC  G   +A  +L+ M++K   P +   +  LL    K G +  A 
Sbjct: 357 EPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAAT 416

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT-PNRLTWSLHIRI 375
           E+L  M    +  +AG YG +I   C    Y  A   LD ++   I   ++ T  +    
Sbjct: 417 EVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDTLEMEPSA 476

Query: 376 HNTVVQGLCKT-----------------------------------DPNRAFQVYLSMRN 400
           +N +++ LC                                     +P+ ++++   M  
Sbjct: 477 YNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNLIRGHAKEGNPDSSYEILKIMSR 536

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R +  +S  Y  LI  +  KG+   +   +D +V DG +PD   + +V+ +L++  +++ 
Sbjct: 537 RGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGHVPDSSLFRSVIESLFEDGRVQT 596

Query: 461 AAELLLLEL-MNKCVEAEVDI 480
           A+ ++++ +  N  +E  +D+
Sbjct: 597 ASRVMMIMIDKNVGIEDNMDL 617



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 15/244 (6%)

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
           E  P +Y  ++  L    Q   A   +R + + G+Q   A LN LI+   K  G  D+++
Sbjct: 471 EMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDA-LNNLIRGHAK-EGNPDSSY 528

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           +I + M  RG   +S  Y  LI      G+  +AK     M      P    + S+I  L
Sbjct: 529 EILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAKTALDSMVEDGHVPDSSLFRSVIESL 588

Query: 237 CQSKSVEEAMRLFEEMRSK--GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
            +   V+ A R+   M  K  G+E N+   + +++ L   G   +A+  + ++    H  
Sbjct: 589 FEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEALGRIDLLNQNGHTA 648

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL----YGKIISCFCDIGKYQEA 350
           ++    +LL+ L ++GK   A+++LD     GL+ D  L    Y K++      GK   A
Sbjct: 649 DL---DSLLSVLSEKGKTIAALKLLDF----GLERDLSLEFSSYDKVLDALLGAGKTLNA 701

Query: 351 ANFL 354
            + L
Sbjct: 702 YSVL 705


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 217/434 (50%), Gaps = 25/434 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF     TF+ ++  L   ++   A DL  ++    C      F ++  G  R  R ++A
Sbjct: 45  GFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEA 100

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +P   +Y T++  + +      A    R M E+  I+P V   + +I 
Sbjct: 101 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIID 160

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K+    DA   +F EM ++G  PD  TY  +ING C  GK  EA+ L +EM  +  S
Sbjct: 161 GLWKDGRHTDAQ-NLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKIS 219

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVT++ LIN L +   +  A  L +EM S GV PNV T ++L+DGLC  G    A+E+
Sbjct: 220 PDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEM 279

Query: 284 LQMM------ISKRH-----RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
            + M      I   H      P++ TY+ L++GL  EGK  EA E+ + M  +G+ PD  
Sbjct: 280 FKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTV 339

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRA 391
            Y  +I+  C   +  EA    D M     +PN +T+       NT++ G CK    +  
Sbjct: 340 TYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTF-------NTLITGYCKAGMVDDG 392

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            +++  M  R I  +++TY +LI  F K G+I+ S  I  E++  G  PD  T   ++T 
Sbjct: 393 LELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTG 452

Query: 452 LWDRRKMRQAAELL 465
           LW + ++++A  +L
Sbjct: 453 LWSKEELKKALAML 466



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 175/357 (49%), Gaps = 18/357 (5%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  V +A+ + D    +   G + +  T+  ++  +        A +LL ++ +E   I 
Sbjct: 94  EGRVVEAVALLDRMVED---GLQPNQITYGTIVDGMCKMGDTVSALNLLRKM-EELSHIK 149

Query: 85  ED--IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            D  I+ +I  G  +  R  DA  +F +M++ G  P   +Y  ++       +   A R 
Sbjct: 150 PDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
            + M    I P V + + LI AL K  G +++A  + +EM + G  P+  T  TL++GLC
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVK-EGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLC 268

Query: 203 RLGKIYEAKELFKEMET-----------KACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
             GK+ +A E+FK M+                P V TY  LI+GL       EA  L+EE
Sbjct: 269 DSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEE 328

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M  +G+ P+  TYSS+++GLCK     +A ++   M SK   PNIVT++TL+ G CK G 
Sbjct: 329 MPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGM 388

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           + + +E+   M  +G+  +A  Y  +I  F  +G    + +   EM+  G+ P+ +T
Sbjct: 389 VDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTIT 445



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 156/293 (53%), Gaps = 16/293 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G   D  T+S MI+   S+ ++  A+ LL  +   K  I+ D+  F  +     +     
Sbjct: 182 GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK--ISPDVVTFSGLINALVKEGDLN 239

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GI 151
            A  +  +M   G  P   +  T+L  L +  +LK A   ++ M++            G+
Sbjct: 240 SAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGV 299

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P V + N+LI  L  N G    A +++ EMP+RG  PD+ TY ++INGLC+  ++ EA 
Sbjct: 300 EPDVQTYNILISGLI-NEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEAT 358

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           ++F  M +K+ SP +VT+ +LI G C++  V++ + LF EM  +G+  N  TY +L+ G 
Sbjct: 359 QMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGF 418

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            K G  + ++++ Q MIS    P+ +T   +L GL  + +L++A+ +L+ +++
Sbjct: 419 RKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEELQM 471



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 13/208 (6%)

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           ++++++ L+   C       A+     +      P +VT++TLL+GLC E ++ EA+++ 
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
            +M     KP+   +  +++  C  G+  EA   LD MV  G+ PN++T+        T+
Sbjct: 74  HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYG-------TI 122

Query: 380 VQGLCKT-DPNRAFQVYLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           V G+CK  D   A  +   M   S I  D + YS++I    K G    +  +  E+   G
Sbjct: 123 VDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKG 182

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD  T+S ++       K  +A  LL
Sbjct: 183 IFPDIVTYSCMINGFCSSGKWSEAQRLL 210


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 239/484 (49%), Gaps = 49/484 (10%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL---DRVNKEKC 81
           E  V +A+ + D    +   G + +  T+  ++  +        A +LL   + V++ K 
Sbjct: 190 EGRVVEAVALLDRMVED---GLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKP 246

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
           ++   I+ +I  G  +  R  DA  +F +M+E G  P   +Y  ++       +   A R
Sbjct: 247 NVV--IYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQR 304

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
             R M E  + P V + +VLI AL K  G    A +++ EM  RG  P++ TY ++I+G 
Sbjct: 305 LLREMFERKMSPDVVTFSVLINALVK-EGKFFEAEELYNEMLPRGIIPNTITYNSMIDGF 363

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
            +  ++  A+ +F  M TK CSP V+T++ LI+G C +K V++ M+L  EM  +G+  N 
Sbjct: 364 SKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANT 423

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY++L+ G C+ G  + A++LLQ MIS    PN+VT +TLL+GLC  GKL++A+E+   
Sbjct: 424 ITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKV 483

Query: 322 MK-----------LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW- 369
           M+              ++PD   Y  +I    + GK+ EA    +EM   G+ P+ +T+ 
Sbjct: 484 MQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYN 543

Query: 370 ---------------------------SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
                                      S  +    T++ G CK        +V+  M  R
Sbjct: 544 SVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRR 603

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I  +++TY +LI  FC+ G+I+ +  I  E++  G  PD  T   ++T LW + ++++A
Sbjct: 604 GIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 663

Query: 462 AELL 465
            + L
Sbjct: 664 VQCL 667



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 213/434 (49%), Gaps = 25/434 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF     TFS ++  L   ++   A     ++    C      F ++  G  R  R ++A
Sbjct: 141 GFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLCREGRVVEA 196

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +P   +Y T++  + +      A    R M E+  I+P V   + +I 
Sbjct: 197 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIID 256

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K+    DA   +F EM  +G +P+ +TY  +ING C  G+  EA+ L +EM  +  S
Sbjct: 257 GLWKDGRQTDAQ-NLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMS 315

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVT++ LIN L +     EA  L+ EM  +G+ PN  TY+S++DG  K      A  +
Sbjct: 316 PDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERM 375

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M +K   P+++T+S L++G C   ++ + +++L  M  +GL  +   Y  +I  FC 
Sbjct: 376 FYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQ 435

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
           +G    A + L EM+  G+ PN +T        NT++ GLC     + A +++  M+   
Sbjct: 436 LGNLNAALDLLQEMISSGVCPNVVTC-------NTLLDGLCNNGKLKDALEMFKVMQKSK 488

Query: 403 ISVDS-----------LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           + +D+            TY+ LI     +G   ++  + +E+   G +PD  T+++V+  
Sbjct: 489 MDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDG 548

Query: 452 LWDRRKMRQAAELL 465
           L  + ++ +A ++ 
Sbjct: 549 LCKQSRLDEATQMF 562



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 162/323 (50%), Gaps = 14/323 (4%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           PCV     L+  + +     D    + R+M  R    + Y++  LI   C   K+  A  
Sbjct: 74  PCVIDFCKLLGVVVRMERP-DVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALS 132

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            F ++      P++VT+++L++GLC    V EA+  F ++     +PNV  +++LM+GLC
Sbjct: 133 TFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLC 188

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDA 331
           + G   +A+ LL  M+    +PN +TY T+++G+CK G    A+ +L +M ++  +KP+ 
Sbjct: 189 REGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNV 248

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NR 390
            +Y  II      G+  +A N   EM   GI+PN  T+       N ++ G C +   + 
Sbjct: 249 VIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTY-------NCMINGFCSSGRWSE 301

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A ++   M  R +S D +T+S LI    K+G   ++  + +E++  G +P+  T+++++ 
Sbjct: 302 AQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMID 361

Query: 451 ALWDRRKMRQAAELLLLELMNKC 473
               + ++  A  +  L     C
Sbjct: 362 GFSKQNRLDAAERMFYLMATKGC 384



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 146/298 (48%), Gaps = 19/298 (6%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F  M      P    +  L+  + R+ +      L ++ME +     + ++T 
Sbjct: 57  LDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTI 116

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI   C    +  A+  F ++   G  P++ T+S+L+ GLC     S+A+     +    
Sbjct: 117 LIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQIC--- 173

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +PN++ ++TL+NGLC+EG++ EAV +LDRM   GL+P+   YG I+   C +G    A 
Sbjct: 174 -KPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSAL 232

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVD 406
           N L +M  +  I PN       + I++ ++ GL K    TD    F     M+ + IS +
Sbjct: 233 NLLRKMEEVSRIKPN-------VVIYSAIIDGLWKDGRQTDAQNLFS---EMQEKGISPN 282

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             TY+ +I  FC  G   ++ R++ E+      PD  T+S ++ AL    K  +A EL
Sbjct: 283 LFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEEL 340


>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 484

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEXIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEXMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 141/314 (44%), Gaps = 45/314 (14%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGC-TPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           L+  +  +S T + A + FR +        +  T+  +I  L R  K+  A+ +  +M  
Sbjct: 14  LVYNVLHSSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPK 73

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K        +  +I+   +   V+E++++F++M   GVE  + +Y++L   + + G    
Sbjct: 74  KGLEWDEDMWVMMIDSYGKEXIVQESVKMFQKMEELGVERTIKSYNALFKVILRRG---- 129

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
                + M++KR+                           ++M  +G++P    +  +I 
Sbjct: 130 -----RYMMAKRY--------------------------FNKMLSEGIEPTRHTFNVMIW 158

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
            F   GK + A  F ++M    I+P+ +T+       NT++ G  +      A + ++ M
Sbjct: 159 GFFLSGKVETANRFFEDMKSREISPDVVTY-------NTMINGYYRVKKMEEAEKYFVEM 211

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           + R+I    +TY++LI  +     +  + R+V+E+   G  P+  T+S ++  L +   M
Sbjct: 212 KGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEXM 271

Query: 459 RQAAELLLLELMNK 472
            + A ++L E+M+K
Sbjct: 272 SE-ARVILKEMMDK 284


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 217/434 (50%), Gaps = 25/434 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF     TF+ ++  L   ++   A DL  ++    C      F ++  G  R  R ++A
Sbjct: 45  GFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEA 100

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +P   +Y T++  + +      A    R M E+  I+P V   + +I 
Sbjct: 101 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIID 160

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K+    DA   +F EM ++G  PD  TY  +ING C  GK  EA+ L +EM  +  S
Sbjct: 161 GLWKDGRHTDAQ-NLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKIS 219

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVT++ LIN L +   +  A  L +EM S GV PNV T ++L+DGLC  G    A+E+
Sbjct: 220 PDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEM 279

Query: 284 LQMM------ISKRH-----RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
            + M      I   H      P++ TY+ L++GL  EGK  EA E+ + M  +G+ PD  
Sbjct: 280 FKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTV 339

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRA 391
            Y  +I+  C   +  EA    D M     +PN +T+       NT++ G CK    +  
Sbjct: 340 TYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTF-------NTLITGYCKAGMVDDG 392

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            +++  M  R I  +++TY +LI  F K G+I+ S  I  E++  G  PD  T   ++T 
Sbjct: 393 LELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTG 452

Query: 452 LWDRRKMRQAAELL 465
           LW + ++++A  +L
Sbjct: 453 LWSKEELKRALAML 466



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 175/357 (49%), Gaps = 18/357 (5%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  V +A+ + D    +   G + +  T+  ++  +        A +LL ++ +E   I 
Sbjct: 94  EGRVVEAVALLDRMVED---GLQPNQITYGTIVDGMCKMGDTVSALNLLRKM-EELSHIK 149

Query: 85  ED--IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            D  I+ +I  G  +  R  DA  +F +M++ G  P   +Y  ++       +   A R 
Sbjct: 150 PDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
            + M    I P V + + LI AL K  G +++A  + +EM + G  P+  T  TL++GLC
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVK-EGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLC 268

Query: 203 RLGKIYEAKELFKEMET-----------KACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
             GK+ +A E+FK M+                P V TY  LI+GL       EA  L+EE
Sbjct: 269 DSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEE 328

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M  +G+ P+  TYSS+++GLCK     +A ++   M SK   PNIVT++TL+ G CK G 
Sbjct: 329 MPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGM 388

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           + + +E+   M  +G+  +A  Y  +I  F  +G    + +   EM+  G+ P+ +T
Sbjct: 389 VDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTIT 445



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 155/293 (52%), Gaps = 16/293 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G   D  T+S MI+   S+ ++  A+ LL  +   K  I+ D+  F  +     +     
Sbjct: 182 GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK--ISPDVVTFSGLINALVKEGDLN 239

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GI 151
            A  +  +M   G  P   +  T+L  L +  +LK A   ++ M++            G+
Sbjct: 240 SAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGV 299

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P V + N+LI  L  N G    A +++ EMP+RG  PD+ TY ++INGLC+  ++ EA 
Sbjct: 300 EPDVQTYNILISGLI-NEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEAT 358

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           ++F  M +K+ SP +VT+ +LI G C++  V++ + LF EM  +G+  N  TY +L+ G 
Sbjct: 359 QMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGF 418

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            K G  + ++++ Q MIS    P+ +T   +L GL  + +L+ A+ +L+ +++
Sbjct: 419 RKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEELQM 471



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 13/208 (6%)

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           ++++++ L+   C       A+     +      P +VT++TLL+GLC E ++ EA+++ 
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
            +M     KP+   +  +++  C  G+  EA   LD MV  G+ PN++T+        T+
Sbjct: 74  HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYG-------TI 122

Query: 380 VQGLCKT-DPNRAFQVYLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           V G+CK  D   A  +   M   S I  D + YS++I    K G    +  +  E+   G
Sbjct: 123 VDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKG 182

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD  T+S ++       K  +A  LL
Sbjct: 183 IFPDIVTYSCMINGFCSSGKWSEAQRLL 210


>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 756

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 243/501 (48%), Gaps = 41/501 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K +  AL  F     E +   RHD  T   MI  L    +   A  +L  + 
Sbjct: 119 VYNVLHGAKKLEHALQFF--RWTERSGLIRHDRDTHMKMIKMLGEVQKLNHARCILLDMP 176

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           ++     ED+F+ +   YG+     +++++F KMK+ G E T KSY T+  +++   +  
Sbjct: 177 EKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNTLFKVILRRGRYM 236

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   G++P   + N+++      S  ++ A + F +M  RG +PD+ TY T+
Sbjct: 237 MAKRYFNKMVSEGVEPTRHTYNLMLWGFFL-SLRLETALRFFDDMKTRGISPDAVTYNTI 295

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING CR  K+ EA++LF EM+     P+VVTYT++I G      V++ +R+FEEMRS G+
Sbjct: 296 INGYCRFKKMDEAEKLFVEMKGNNSEPSVVTYTTMIKGYLSVDRVDDGLRIFEEMRSFGI 355

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           EPN  TYS+L+ GLC  G   +A  +L+ M++K   P +   +  LL    K G +  A 
Sbjct: 356 EPNATTYSTLLPGLCDVGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAAT 415

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT-PNRLTWSLHIRI 375
           E+L  M    +  +AG YG +I   C    Y  A   LD ++   I   ++ T  +    
Sbjct: 416 EVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDTLEMEPSA 475

Query: 376 HNTVVQGLCKT-----------------------------------DPNRAFQVYLSMRN 400
           +N +++ LC                                     +P  ++++   M  
Sbjct: 476 YNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDALNNLIRGHAKEGNPESSYEILKIMSR 535

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R +  ++  Y  LI  +  KG+   +   +D +V DG +PD   + +V+ +L++  +++ 
Sbjct: 536 RGVPREANAYELLIKSYMSKGEPGDAKTALDSMVEDGHVPDSALFRSVIESLFEDGRVQT 595

Query: 461 AAELLLLEL-MNKCVEAEVDI 480
           A+ ++++ +  N  +E  +D+
Sbjct: 596 ASRVMMIMIDKNVGIEDNMDL 616



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 7/240 (2%)

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
           E  P +Y  ++  L    Q   A   +R + + G+Q   A LN LI+   K  G  ++++
Sbjct: 470 EMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDA-LNNLIRGHAK-EGNPESSY 527

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           +I + M  RG   ++  Y  LI      G+  +AK     M      P    + S+I  L
Sbjct: 528 EILKIMSRRGVPREANAYELLIKSYMSKGEPGDAKTALDSMVEDGHVPDSALFRSVIESL 587

Query: 237 CQSKSVEEAMRLFEEMRSK--GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
            +   V+ A R+   M  K  G+E N+   + +++ L   G   +A+  + ++    H  
Sbjct: 588 FEDGRVQTASRVMMIMIDKNVGIEDNMDLIAKILEALLMRGHVEEALGRIDLLNQNGHTA 647

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++    +LL+ L ++GK   A+++LD    + L  D   Y K++      GK   A + L
Sbjct: 648 DL---DSLLSVLSEKGKTIAALKLLDFGLERDLSLDFSSYDKVLDALLGAGKTLNAYSVL 704


>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 484

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC +G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGXLIENFCKVGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM  L+
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMEXLF 484



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 166/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGXLIENFCKVGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 223/419 (53%), Gaps = 10/419 (2%)

Query: 48  HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRV 107
           H  +T+ L++  L        A+ + D +  +       I   +   Y R+ +   A   
Sbjct: 107 HTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNF 166

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            +++  +G + +P  Y  +L +LV++N +  A   +R   E    P V S N+LI+ LC+
Sbjct: 167 LNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCR 226

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE-METKACSPTV 226
             G +D AF+ F+ M N GC PD  +Y TLING CR+ +I +  +L KE M  K  SP V
Sbjct: 227 -IGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDV 285

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           +TYTS+I+G C+   ++ A  LF+EM S G++PN FT++ L+DG  K G    AM + + 
Sbjct: 286 ITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEK 345

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+     P++VT+++L++G C+EG++ + +++ + MK++ L P+   Y  +I+  C   +
Sbjct: 346 MLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENR 405

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
            +EA NFL  +    + P          I+N V+ G CK    + A  +   M+ +    
Sbjct: 406 IREARNFLRHLKSSEVVPKPF-------IYNPVIDGFCKAGKVDEANFIVAEMQEKKCRP 458

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           D +T++ LI   C KG + ++     +++   C+PDE T +++++ L       +A+++
Sbjct: 459 DKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQI 517



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 187/378 (49%), Gaps = 10/378 (2%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           VFD M+  G  P       +++      +L  A  F   +   GI+      N L+  L 
Sbjct: 131 VFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLV 190

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +  +D A  +FRE       PD Y++  LI GLCR+G+I +A E F+ M    C P +
Sbjct: 191 KQN-LVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDI 249

Query: 227 VTYTSLINGLCQSKSVEEAMRLF-EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           V+Y +LING C+   + +   L  E+M  KGV P+V TY+S++ G CK G    A EL  
Sbjct: 250 VSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFD 309

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+S   +PN  T++ L++G  K G ++ A+ + ++M L G  PD   +  +I  +C  G
Sbjct: 310 EMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREG 369

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSIS 404
           +  +     +EM +  ++PN  T+++       ++  LCK +  R  + +L  +++  + 
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAV-------LINALCKENRIREARNFLRHLKSSEVV 422

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
                Y+ +I  FCK G + ++  IV E+    C PD+ T++ ++     + +M +A   
Sbjct: 423 PKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAIST 482

Query: 465 LLLELMNKCVEAEVDIQN 482
               +   CV  E+ I +
Sbjct: 483 FYKMIEINCVPDEITINS 500



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 173/331 (52%), Gaps = 11/331 (3%)

Query: 138 LAFRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           L  +F+   R  + I     + ++L++ LCK  G  D+A  +F  M + G  PDS     
Sbjct: 91  LGLKFFEFSRTHLSINHTFNTYDLLMRNLCK-VGLNDSAKIVFDCMRSDGILPDSSILEL 149

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L++   R+GK+  AK    E+       +   Y +L+N L +   V+EA+ LF E     
Sbjct: 150 LVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPY 209

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
             P+V++++ L+ GLC+ G   +A E  Q M +    P+IV+Y+TL+NG C+  ++ +  
Sbjct: 210 FVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGH 269

Query: 317 EIL-DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           ++L + M ++G+ PD   Y  IIS +C +G  + A+   DEMV  GI PN  T+      
Sbjct: 270 DLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTF------ 323

Query: 376 HNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            N ++ G  K    R A  +Y  M       D +T++SLI  +C++G++++  ++ +E+ 
Sbjct: 324 -NVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMK 382

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +    P+  T++ ++ AL    ++R+A   L
Sbjct: 383 VRNLSPNVYTYAVLINALCKENRIREARNFL 413



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 1/246 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +IS        + A +L D +        +  F  +  G+G+V     A
Sbjct: 280 GVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSA 339

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M +++KM   GC P   ++ +++     E ++    + +  M+   + P V +  VLI A
Sbjct: 340 MVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINA 399

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +   +A     R + +    P  + Y  +I+G C+ GK+ EA  +  EM+ K C P
Sbjct: 400 LCKENRIREAR-NFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRP 458

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +T+T LI G C    + EA+  F +M      P+  T +SL+  L K G  ++A ++ 
Sbjct: 459 DKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQIK 518

Query: 285 QMMISK 290
           Q  + K
Sbjct: 519 QAALQK 524


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 201/369 (54%), Gaps = 15/369 (4%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYIT---VLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           R L  +R F+  K  G      S I+   +L+ LV+E++       YR M +  I+  V 
Sbjct: 97  RNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVI 156

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC---RLGKIYEAKEL 213
           S N+++  LCK  G ++ A  +  +M   G +P+  TY TLI+G C   R+GK+Y+A  +
Sbjct: 157 SFNIVVNGLCK-VGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAI 215

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            KEM  K   P  VTY  LI+G C+ ++V  AMR+F EM+ +G+ PNV TY+ L++GLC 
Sbjct: 216 LKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCS 275

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A+ L   M+S    PN+VT++ L+NG CK   + EA+ + + M+ QG+ P+A  
Sbjct: 276 DGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMT 335

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAF 392
           Y  +I  +C  G+ ++A    + M+  GI P        +  +N ++ GLC K D   A 
Sbjct: 336 YTTLIDAYCKDGRMEDAFALYNMMIDRGIFP-------EVSTYNCLIAGLCRKGDVKAAR 388

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            +   M ++ +S D +TY+ LI   CKKG+  K+ +++DE+   G  P   T++ +M   
Sbjct: 389 SLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGY 448

Query: 453 WDRRKMRQA 461
                +R A
Sbjct: 449 CREGNLRAA 457



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 214/415 (51%), Gaps = 12/415 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+    + + ++S LV  ++    E +   + K K ++    F  +  G  +V +   A
Sbjct: 115 GFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRA 174

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI---GIQPCVASLNVL 161
             V + MK +G  P   +Y T++    +  ++   ++    ++E+   GI P   + N+L
Sbjct: 175 GDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNIL 234

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK+   +  A ++F EM  +G  P+  TY  LINGLC  GK+ EA  L  +M +  
Sbjct: 235 IDGFCKDE-NVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSD 293

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVT+  LING C++K+V EA+ LF +M  +GV+PN  TY++L+D  CK G    A 
Sbjct: 294 LEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAF 353

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            L  MMI +   P + TY+ L+ GLC++G ++ A  +++ M  + L  D   Y  +I   
Sbjct: 354 ALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSL 413

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRN 400
           C  G+ ++A   LDEM   G+ P+ +T+       NT++ G C+    R A  V   M  
Sbjct: 414 CKKGESRKAVKLLDEMFEKGLNPSHVTY-------NTLMDGYCREGNLRAALIVRTRMER 466

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           +    + +T++ LI  FC KG +  +  +++E++  G +P+  T+  +   + ++
Sbjct: 467 KGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEK 521



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 180/339 (53%), Gaps = 15/339 (4%)

Query: 150 GIQPCVASL--NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           G   CV S+  ++L+ A  +N   +   F+ F+   + G      +   L++GL +  + 
Sbjct: 78  GDSFCVNSILADMLVLAFVRNLKIL-RGFEAFKRAGDYGFKLSLISCNPLLSGLVKESEN 136

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            + + +++EM  +     V+++  ++NGLC+   +  A  + E+M+  GV PNV TY++L
Sbjct: 137 GDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTL 196

Query: 268 MDGLCKGGCSS---QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +DG CK G      +A  +L+ M++K   PN VTY+ L++G CK+  +  A+ +   M+ 
Sbjct: 197 IDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQR 256

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           QGL+P+   Y  +I+  C  GK  EA    D+MV   + PN +T       HN ++ G C
Sbjct: 257 QGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVT-------HNVLINGFC 309

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K    N A  ++  M  + +  +++TY++LI  +CK G +  +  + + ++  G  P+  
Sbjct: 310 KNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVS 369

Query: 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           T++ ++  L  R+   +AA  L+ E+++K + A+V   N
Sbjct: 370 TYNCLIAGLC-RKGDVKAARSLMNEMVSKKLSADVVTYN 407



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 153/289 (52%), Gaps = 10/289 (3%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKC 81
           +++V+ A+ +F     +   G R +  T++++I+ L S  +   A  L D++   + E  
Sbjct: 241 DENVSGAMRVFGEMQRQ---GLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPN 297

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
            +T ++ ++   G+ +     +A+ +F+ M++ G +P   +Y T++    ++ +++ AF 
Sbjct: 298 VVTHNVLIN---GFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFA 354

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            Y  M + GI P V++ N LI  LC+  G + AA  +  EM ++  + D  TY  LI+ L
Sbjct: 355 LYNMMIDRGIFPEVSTYNCLIAGLCR-KGDVKAARSLMNEMVSKKLSADVVTYNILIDSL 413

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+ G+  +A +L  EM  K  +P+ VTY +L++G C+  ++  A+ +   M  KG + NV
Sbjct: 414 CKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANV 473

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            T++ L+ G C  G    A  LL  M+ +   PN  TY  +   + ++G
Sbjct: 474 VTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKG 522


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 219/418 (52%), Gaps = 12/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D   ++ M++    A Q   A  L+  +  E    T +  +    G GR     +A+ V 
Sbjct: 125 DVMAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTA---NALAVL 181

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M    C P   +Y  +L    + +  K A +    MR+ G  P + + NV++  +C+ 
Sbjct: 182 DEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ- 240

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D A +  + +P+ GC P++ +Y  ++ GLC   +  +A+EL  EM  K C P VVT
Sbjct: 241 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVT 300

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  LI+ LC+   VE A+ + E++   G  PN  +Y+ L+   CK     +AM  L +M+
Sbjct: 301 FNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMV 360

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+   P+IV+Y+TLL  LC+ G++  AVE+L ++K +G  P    Y  +I      GK +
Sbjct: 361 SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTK 420

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           EA   L+EMV  G+ P+ +T+S       T+  GLC+ D    A + +  +++  I  ++
Sbjct: 421 EALELLNEMVSKGLQPDIITYS-------TIAAGLCREDRIEDAIRAFGKVQDMGIRPNT 473

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + Y+++I   CK+ + H +  +   ++ +GC+P+E T++ ++  L     +++A +LL
Sbjct: 474 VLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLL 531



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 212/444 (47%), Gaps = 17/444 (3%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
            D A     +  R D  T + +I KL ++ +   A  +L       C      + ++  G
Sbjct: 81  LDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVL-----AACGPDVMAYNAMVAG 135

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           Y    + LDA R    + E   EP   +Y T++  L    +   A      M      P 
Sbjct: 136 YCGAGQ-LDAARRL--VAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPD 192

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           V +  +L++A CK SG    A K+  EM ++GCTPD  TY  ++NG+C+ G++ +A E  
Sbjct: 193 VVTYTILLEATCKRSG-YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFL 251

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           K + +  C P  V+Y  ++ GLC ++  E+A  L  EM  KG  PNV T++ L+  LC+ 
Sbjct: 252 KNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRK 311

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G    A+E+L+ +      PN ++Y+ LL+  CK+ K+ +A+  LD M  +G  PD   Y
Sbjct: 312 GLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSY 371

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQ 393
             +++  C  G+   A   L ++   G  P  +++       NTV+ GL K    + A +
Sbjct: 372 NTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISY-------NTVIDGLTKAGKTKEALE 424

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +   M ++ +  D +TYS++    C++  I  + R   ++   G  P+   ++A++  L 
Sbjct: 425 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLC 484

Query: 454 DRRKMRQAAELLLLELMNKCVEAE 477
            RR+   A +L    + N C+  E
Sbjct: 485 KRRETHSAIDLFAYMIGNGCMPNE 508



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 177/327 (54%), Gaps = 13/327 (3%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V + N ++   C  +G +DAA ++  EMP     PD+YTY TLI GLC  G+   A  
Sbjct: 124 PDVMAYNAMVAGYC-GAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALA 179

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +  EM  + C P VVTYT L+   C+    ++AM+L +EMR KG  P++ TY+ +++G+C
Sbjct: 180 VLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC 239

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           + G    A+E L+ + S    PN V+Y+ +L GLC   + ++A E++  M  +G  P+  
Sbjct: 240 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVV 299

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF 392
            +  +IS  C  G  + A   L+++   G TPN L++       N ++   CK       
Sbjct: 300 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSY-------NPLLHAFCKQKKMDKA 352

Query: 393 QVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             +L  M +R    D ++Y++L+T  C+ G++  +  ++ +L   GC P   +++ V+  
Sbjct: 353 MAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDG 412

Query: 452 LWDRRKMRQAAELLLLELMNKCVEAEV 478
           L    K ++A E LL E+++K ++ ++
Sbjct: 413 LTKAGKTKEALE-LLNEMVSKGLQPDI 438



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 161/331 (48%), Gaps = 1/331 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++++++ +    +   A + L  +    C+     +  + +G     R  DA
Sbjct: 223 GCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDA 282

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +M + GC P   ++  +++ L  +  ++ A      + + G  P   S N L+ A
Sbjct: 283 EELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHA 342

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK    MD A      M +RGC PD  +Y TL+  LCR G++  A EL  +++ K C+P
Sbjct: 343 FCKQK-KMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP 401

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +++Y ++I+GL ++   +EA+ L  EM SKG++P++ TYS++  GLC+      A+   
Sbjct: 402 VLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAF 461

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +     RPN V Y+ ++ GLCK  +   A+++   M   G  P+   Y  +I      
Sbjct: 462 GKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 521

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           G  +EA + LDE+   G+    L     IR+
Sbjct: 522 GLIKEARDLLDELCSRGVVRKSLINKGAIRL 552



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 9/210 (4%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K ++KA+   D   +    G   D  +++ +++ L  + +   A +LL ++  + C   
Sbjct: 346 QKKMDKAMAFLDLMVSR---GCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 402

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  +  +A+ + ++M   G +P   +Y T+ A L  E++++ A R + 
Sbjct: 403 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG 462

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            ++++GI+P     N +I  LCK   T  +A  +F  M   GC P+  TY  LI GL   
Sbjct: 463 KVQDMGIRPNTVLYNAIILGLCKRRET-HSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 521

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           G I EA++L  E+    CS  VV   SLIN
Sbjct: 522 GLIKEARDLLDEL----CSRGVVR-KSLIN 546


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 223/419 (53%), Gaps = 10/419 (2%)

Query: 48  HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRV 107
           H  +T+ L++  L        A+ + D +  +       I   +   Y R+ +   A   
Sbjct: 107 HTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNF 166

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            +++  +G + +P  Y  +L +LV++N +  A   +R   E    P V S N+LI+ LC+
Sbjct: 167 LNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCR 226

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE-METKACSPTV 226
             G +D AF+ F+ M N GC PD  +Y TLING CR+ +I +  +L KE M  K  SP V
Sbjct: 227 -IGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDV 285

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           +TYTS+I+G C+   ++ A  LF+EM S G++PN FT++ L+DG  K G    AM + + 
Sbjct: 286 ITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEK 345

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+     P++VT+++L++G C+EG++ + +++ + MK++ L P+   Y  +I+  C   +
Sbjct: 346 MLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENR 405

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
            +EA NFL  +    + P          I+N V+ G CK    + A  +   M+ +    
Sbjct: 406 IREARNFLRHLKSSEVVPKPF-------IYNPVIDGFCKAGKVDEANFIVAEMQEKKCRP 458

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           D +T++ LI   C KG + ++     +++   C+PDE T +++++ L       +A+++
Sbjct: 459 DKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQI 517



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 187/378 (49%), Gaps = 10/378 (2%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           VFD M+  G  P       +++      +L  A  F   +   GI+      N L+  L 
Sbjct: 131 VFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLV 190

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +  +D A  +FRE       PD Y++  LI GLCR+G+I +A E F+ M    C P +
Sbjct: 191 KQN-LVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDI 249

Query: 227 VTYTSLINGLCQSKSVEEAMRLF-EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           V+Y +LING C+   + +   L  E+M  KGV P+V TY+S++ G CK G    A EL  
Sbjct: 250 VSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFD 309

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+S   +PN  T++ L++G  K G ++ A+ + ++M L G  PD   +  +I  +C  G
Sbjct: 310 EMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREG 369

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSIS 404
           +  +     +EM +  ++PN  T+++       ++  LCK +  R  + +L  +++  + 
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAV-------LINALCKENRIREARNFLRHLKSSEVV 422

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
                Y+ +I  FCK G + ++  IV E+    C PD+ T++ ++     + +M +A   
Sbjct: 423 PKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAIST 482

Query: 465 LLLELMNKCVEAEVDIQN 482
               +   CV  E+ I +
Sbjct: 483 FYKMIEINCVPDEITINS 500



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 173/331 (52%), Gaps = 11/331 (3%)

Query: 138 LAFRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           L  +F+   R  + I     + ++L++ LCK  G  D+A  +F  M + G  PDS     
Sbjct: 91  LGLKFFEFSRTHLSINHTFNTYDLLMRNLCK-VGLNDSAKIVFDCMRSDGILPDSSILEL 149

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L++   R+GK+  AK    E+       +   Y +L+N L +   V+EA+ LF E     
Sbjct: 150 LVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPY 209

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
             P+V++++ L+ GLC+ G   +A E  Q M +    P+IV+Y+TL+NG C+  ++ +  
Sbjct: 210 FVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGH 269

Query: 317 EIL-DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           ++L + M ++G+ PD   Y  IIS +C +G  + A+   DEMV  GI PN  T+      
Sbjct: 270 DLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTF------ 323

Query: 376 HNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            N ++ G  K    R A  +Y  M       D +T++SLI  +C++G++++  ++ +E+ 
Sbjct: 324 -NVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMK 382

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +    P+  T++ ++ AL    ++R+A   L
Sbjct: 383 VRNLSPNVYTYAVLINALCKENRIREARNFL 413



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 1/246 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +IS        + A +L D +        +  F  +  G+G+V     A
Sbjct: 280 GVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSA 339

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M +++KM   GC P   ++ +++     E ++    + +  M+   + P V +  VLI A
Sbjct: 340 MVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINA 399

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +   +A     R + +    P  + Y  +I+G C+ GK+ EA  +  EM+ K C P
Sbjct: 400 LCKENRIREAR-NFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRP 458

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +T+T LI G C    + EA+  F +M      P+  T +SL+  L K G  ++A ++ 
Sbjct: 459 DKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQIK 518

Query: 285 QMMISK 290
           Q  + K
Sbjct: 519 QAALQK 524


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 235/454 (51%), Gaps = 14/454 (3%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           +LQL R  +  +KA  +F     +     + D  TF++++  L  +NQ   A  LL R+ 
Sbjct: 14  LLQLTREHRH-DKASAVFQEMIDKSC---QPDAFTFAILLRGLCRSNQLEKARKLLGRMK 69

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +  C   + I+ ++  GY +      A +   +M +  C PT  +Y  ++  L +  + +
Sbjct: 70  EMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTR 129

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A +    MR+ G  P + + NV+++ LC+    +D A K+  EM  RG  PD  TY + 
Sbjct: 130 DAVKLLDEMRDKGCSPNIYTYNVIVEGLCEER-KLDEAKKMLEEMAVRGYFPDVVTYNSF 188

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I GLC+  ++ EA++    M     +P VV+YT++INGLC+S  ++ A R+ + M ++G 
Sbjct: 189 IKGLCKCDRVDEARKFLARMPV---TPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGC 245

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P+V TYSSL+DG CKGG   +AM LL  M+    RPN+V Y++LL  L + G + +A +
Sbjct: 246 TPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAED 305

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL---HIR 374
           +L  M+ +G  PD   Y   I   C   + ++A    D MV  G TPN  ++S+    I 
Sbjct: 306 MLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDIL 365

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSI-SVDSLTYSSLITCFCKKGDIHKSARIVDE 432
           ++  ++ GLCK    + A  ++  + +  I   D   Y+ ++   CK+  I K+ +I  +
Sbjct: 366 LYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQ 425

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           ++   C  +  TW+ ++  L    ++  A  +LL
Sbjct: 426 MLEKNCC-NVVTWNILVHGLCVDDRLSDAETMLL 458



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 178/319 (55%), Gaps = 12/319 (3%)

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
           +G +  V + N L+  L +     D A  +F+EM ++ C PD++T+  L+ GLCR  ++ 
Sbjct: 1   MGYEHNVFTYNKLLLQLTREH-RHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLE 59

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A++L   M+   C P    Y +LI+G  ++K   +A +   EM      P V TY++++
Sbjct: 60  KARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIV 119

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DGLCK   +  A++LL  M  K   PNI TY+ ++ GLC+E KL EA ++L+ M ++G  
Sbjct: 120 DGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF 179

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D 387
           PD   Y   I   C   +  EA  FL  M    +TP+ ++++       TV+ GLCK+ D
Sbjct: 180 PDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYT-------TVINGLCKSGD 229

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            + A ++   M NR  + D +TYSSLI  FCK G++ ++  ++D ++  GC P+   +++
Sbjct: 230 LDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNS 289

Query: 448 VMTALWDRRKMRQAAELLL 466
           ++ AL     + +A ++L+
Sbjct: 290 LLGALHRLGHIGKAEDMLV 308



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 185/433 (42%), Gaps = 111/433 (25%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D++ ++ +IS    A  F  A   L  + K  C  T   + +I  G  +  R  DA+++ 
Sbjct: 76  DDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLL 135

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK- 167
           D+M++ GC P   +Y  ++  L EE +L  A +    M   G  P V + N  IK LCK 
Sbjct: 136 DEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKC 195

Query: 168 ------------------------------NSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                                          SG +D+A ++   M NRGCTPD  TY +L
Sbjct: 196 DRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSL 255

Query: 198 INGLC-----------------------------------RLGKIYEAKELFKEMETKAC 222
           I+G C                                   RLG I +A+++  EME +  
Sbjct: 256 IDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGF 315

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN----------VFTYSSLMDGLC 272
           +P VV+Y + I+GLC+++ V++A  +F+ M  +G  PN          +  Y+ L+DGLC
Sbjct: 316 TPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLC 375

Query: 273 KGGCSSQAMELLQMMISKR----------------------------HRP-------NIV 297
           KGG   +A  L   ++ ++                            H+        N+V
Sbjct: 376 KGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVV 435

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           T++ L++GLC + +L +A  +L  M  +G  PD   YG ++   C  GK   A    +E 
Sbjct: 436 TWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEA 495

Query: 358 VLGGITPNRLTWS 370
           V GG  P+ +T+S
Sbjct: 496 VKGGCVPDVVTYS 508



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 157/337 (46%), Gaps = 19/337 (5%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRPLDAM 105
           D  +++ +I+ L  +     A  +LD ++   C      + S+  G+   G V R   AM
Sbjct: 213 DVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVER---AM 269

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            + D M + GC P   +Y ++L  L     +  A      M   G  P V S N  I  L
Sbjct: 270 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 329

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI----------NGLCRLGKIYEAKELF- 214
           CK +  +  A  +F  M  RGCTP++ +Y  LI          +GLC+ G+  EA  LF 
Sbjct: 330 CK-AERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFS 388

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           K ++ K C P V  Y  +++  C+ + +++A+++ ++M  K    NV T++ L+ GLC  
Sbjct: 389 KVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVD 447

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
              S A  +L  M+ +   P+ VTY TL++ +CK GK   A+E+ +     G  PD   Y
Sbjct: 448 DRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTY 507

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
             +I+        +EA     ++V     P+  T  L
Sbjct: 508 SALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGL 544



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 20/289 (6%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +V +A+ + DS       G R +   ++ ++  L        AED+L  V  E+   T D
Sbjct: 264 EVERAMGLLDSMLKL---GCRPNMVAYNSLLGALHRLGHIGKAEDML--VEMERRGFTPD 318

Query: 87  I--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY----ITVLAILVEENQLKLAF 140
           +  + +   G  +  R   A  VFD+M E GC P   SY    + +L   V  + L    
Sbjct: 319 VVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGG 378

Query: 141 RF-------YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           RF        + + E   +P V   NV++ + CK    +D A +I ++M  + C  +  T
Sbjct: 379 RFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRR-QIDKALQIHKQMLEKNCC-NVVT 436

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           +  L++GLC   ++ +A+ +   M  +   P  VTY +L++ +C+      A+ LFEE  
Sbjct: 437 WNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAV 496

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
             G  P+V TYS+L+ GL     + +A  L   ++ +R  P+  T   L
Sbjct: 497 KGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLL 545



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 48/94 (51%)

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           ++A  V+  M ++S   D+ T++ L+   C+   + K+ +++  +   GC+PD+  ++A+
Sbjct: 24  DKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNAL 83

Query: 449 MTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           ++     +   QA + L   + N C+   V   N
Sbjct: 84  ISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTN 117


>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 484

 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 236/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  AV
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAV 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPADAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +  ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAVDVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGLLIENFCKAGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 484

 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 234/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY T+  +++   +  
Sbjct: 73  KKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTTKSYDTLFKVILRRGRFM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFDDMKSREISPDVITYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++G CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYIAPTDNSIFMRLISGQCKTGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC   ++ +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKADQHDKAVKLLDKLIEKDIIL-RPQSTLHMEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQTAKAEALVRQLLKLGVQDPTALNTLVRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKNEPADAKXALDSMIENDHLPDSSLFRSVMESLF 484



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 163/347 (46%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ +LF++ME      T  +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKAGIVQESVKLFQKMEELGVERTTKSYDTLFKVILRRGRFMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A      M S+   P+++TY+T++NG  +  K+ EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFDDMKSREISPDVITYNTMINGYYRVKKMDEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +  + A  V   M ++ I+  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARSVLKEMVDKYIAPTDNSIFMRLISGQCKTGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKADQHDKAVKLL-----DKLIEKDIILRPQ 362


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 229/428 (53%), Gaps = 21/428 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRG--YGRV 98
           G   D  +++ ++  L  A ++   E+L+D + +  C    +T +  +  +CR   + RV
Sbjct: 211 GCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERV 270

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H       V  +M E GC P  + Y T++  + +E  L++A      M   G++P V   
Sbjct: 271 HE------VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCY 324

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N ++K LC      +A  ++  EM  + C  D  T+  L++  C+ G +    EL ++M 
Sbjct: 325 NTVLKGLCSAERWKEAE-ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 383

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +  C P V+TYT++ING C+   ++EA+ L + M S G +PN  +Y+ ++ GLC  G   
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A EL+  MI +   PN VT++TL+N LCK+G +++A+E+L +M + G  PD   Y  +I
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
                 GK +EA   L+ MV  GI+PN +       I++++   L +    N+  Q++ +
Sbjct: 504 DGLGKAGKTEEALELLNVMVNKGISPNTI-------IYSSIACALSREGRVNKVIQMFDN 556

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +++ +I  D++ Y+++I+  CK+ +  ++      +V +GC+P+E T++ ++  L     
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 458 MRQAAELL 465
            ++A ELL
Sbjct: 617 AKEAQELL 624



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 193/404 (47%), Gaps = 30/404 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +  K+  FGCE    SY  VL  L    +          M  +   P + + N LI
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLI 258

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+N G  +   ++  +M   GCTPD   Y T+I+G+C+ G +  A E+   M +   
Sbjct: 259 GYLCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y +++ GLC ++  +EA  L  EM  K    +  T++ L+D  C+ G   + +E
Sbjct: 318 KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+S    P+++TY+T++NG CKEG + EAV +L  M   G KP+   Y  ++   C
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI--------------------------- 375
             G++ +A   + +M+  G  PN +T++  I                             
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLI 497

Query: 376 -HNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            ++TV+ GL K      A ++   M N+ IS +++ YSS+     ++G ++K  ++ D +
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNI 557

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
                  D   ++AV+++L  R +  +A +     + N C+  E
Sbjct: 558 KDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNE 601



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 192/414 (46%), Gaps = 44/414 (10%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  + RG     R  DA+ V D+M   GC P P  Y  +L         + + R    M 
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G      + N+++ A+C+  G +D A  + R++   GC  D  +Y  ++ GLC   + 
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQ-GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRW 232

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            + +EL  EM    C+P +VT+ +LI  LC++   E    +  +M   G  P++  Y+++
Sbjct: 233 GDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATI 292

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA------------ 315
           +DG+CK G    A E+L  M S   +PN+V Y+T+L GLC   + +EA            
Sbjct: 293 IDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDC 352

Query: 316 -----------------------VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
                                  +E+L++M   G  PD   Y  +I+ FC  G   EA  
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
            L  M   G  PN +++++       V++GLC       A ++   M  +    + +T++
Sbjct: 413 LLKSMSSCGCKPNTVSYTI-------VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFN 465

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +LI   CKKG + ++  ++ +++++GC PD  ++S V+  L    K  +A ELL
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELL 519



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 160/316 (50%), Gaps = 7/316 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G + +   ++ ++  L SA +++ AE+LL  + ++ C   D+T +I +      G V R 
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR- 374

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              + + ++M   GC P   +Y TV+    +E  +  A    + M   G +P   S  ++
Sbjct: 375 --VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K LC     +DA  ++  +M  +GC P+  T+ TLIN LC+ G + +A EL K+M    
Sbjct: 433 LKGLCSAGRWVDAE-ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP +++Y+++I+GL ++   EEA+ L   M +KG+ PN   YSS+   L + G  ++ +
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI 551

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   +     R + V Y+ +++ LCK  +   A++    M   G  P+   Y  +I   
Sbjct: 552 QMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611

Query: 342 CDIGKYQEAANFLDEM 357
              G  +EA   L E+
Sbjct: 612 ASEGLAKEAQELLSEL 627



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 140/302 (46%), Gaps = 16/302 (5%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G   D  T++ +I+          A  LL  ++   C      +  + +G     R +
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +  +M + GC P P ++ T++  L ++  ++ A    + M   G  P + S + +I
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K +G  + A ++   M N+G +P++  Y ++   L R G++ +  ++F  ++    
Sbjct: 504 DGLGK-AGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTI 562

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V Y ++I+ LC+    + A+  F  M S G  PN  TY+ L+ GL   G + +A E
Sbjct: 563 RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622

Query: 283 LLQMMIS----KRH--RPNIVTYSTLLNGLCK-EGKLQEAV--------EILDRMKLQGL 327
           LL  + S    ++H  R   ++  T  NG  K E  L  AV        EIL  +++Q L
Sbjct: 623 LLSELCSRGALRKHLMRHFGISNCTQENGKQKCEENLTSAVDNNYKLPIEILGFLEIQNL 682

Query: 328 KP 329
           +P
Sbjct: 683 RP 684



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 112/244 (45%), Gaps = 17/244 (6%)

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV Y +++ G C++  +  A RL   +    V PN +T+  ++ GLC  G  + A+E+L 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M  K   P    Y  +L   C+ G  + +V +L+ M  +G   D G    +++  C+ G
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQG 195

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
              EA   L ++   G   + +++       N V++GLC     + +     + +  + V
Sbjct: 196 CVDEAVGLLRKLAFFGCEADIVSY-------NAVLKGLCMA---KRWGDVEELMDEMVRV 245

Query: 406 DS----LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           D     +T+++LI   C+ G   +   ++ ++   GC PD   ++ ++  +     +  A
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVA 305

Query: 462 AELL 465
            E+L
Sbjct: 306 NEIL 309


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 195/387 (50%), Gaps = 9/387 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TFS++I+ LV A     A  L        C I    + +I     +  +  +A+ + +K+
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC PT  +Y  +L  L +  +L+ A    R + + G  P V +   LI  L K   +
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            + A+K+F+EM +RG   D+  Y  LI GL + GKI +A  ++K M ++ C P VVT ++
Sbjct: 121 FE-AYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 179

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+GLC++  +  A+R+F+ M ++G+ PN   YS+L+ GLCK      A+E+L  M    
Sbjct: 180 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 239

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+ +TY+ L++GLCK G +  A    D M   G KPD   Y  +IS FC  G    A 
Sbjct: 240 CTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 299

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
              D+M     +PN +T+        T++ GLCK     +A   Y  M+ R    DS  Y
Sbjct: 300 GVFDDMSSSRCSPNVVTY-------GTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVY 352

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDG 437
           SSL+   CK G +     + DE+   G
Sbjct: 353 SSLVDGLCKSGKLEGGCMLFDEMERSG 379



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 208/421 (49%), Gaps = 14/421 (3%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   ++  +   K + +A+ + +  TA   NG     +T++ +++ L    +   A DLL
Sbjct: 36  TYTTIVDWLAKNKKIQEAVALMEKITA---NGCTPTIATYNALLNGLCKMGRLEEAIDLL 92

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
            ++    C      + S+  G G+  R  +A ++F +M   G       Y  ++  L++ 
Sbjct: 93  RKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQA 152

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
            ++  A   Y+ M   G  P V +L+ +I  LCK +G + AA +IF+ M  RG  P+   
Sbjct: 153 GKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK-AGRIGAAVRIFKSMEARGLAPNEVV 211

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y  LI+GLC+  K+  A E+  +M+   C+P  +TY  LI+GLC+S  V  A   F+EM 
Sbjct: 212 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEML 271

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             G +P+V+TY+ L+ G CK G +  A  +   M S R  PN+VTY TL++GLCK  +L 
Sbjct: 272 EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLT 331

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +A      MK +G  PD+ +Y  ++   C  GK +      DEM   G+  ++    L  
Sbjct: 332 KASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRL-- 389

Query: 374 RIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
                 +  LCK +  + A  ++ ++R   +      Y+S+I+   K G +++   +  E
Sbjct: 390 ------IFHLCKANRVDEAVSLFNAIRKEGMP-HPYAYNSIISALIKSGKVNEGQAVYQE 442

Query: 433 L 433
           +
Sbjct: 443 M 443



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 185/352 (52%), Gaps = 9/352 (2%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           GC     +Y T++  L +  +++ A      +   G  P +A+ N L+  LCK  G ++ 
Sbjct: 29  GCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCK-MGRLEE 87

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A  + R++ + GCTPD  TY +LI+GL +  + +EA +LFKEM ++  +   V YT+LI 
Sbjct: 88  AIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIR 147

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           GL Q+  + +A  +++ M S+G  P+V T S+++DGLCK G    A+ + + M ++   P
Sbjct: 148 GLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAP 207

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N V YS L++GLCK  K+  A+E+L +MK     PD   Y  +I   C  G    A  F 
Sbjct: 208 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFF 267

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413
           DEM+  G  P+  T+       N ++ G CK  + + A  V+  M +   S + +TY +L
Sbjct: 268 DEMLEAGCKPDVYTY-------NILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTL 320

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I+  CK+  + K++     +   GC PD   +S+++  L    K+     L 
Sbjct: 321 ISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLF 372



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 156/297 (52%), Gaps = 9/297 (3%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + ++LI  L K +G +  A  + +E    GCT D +TY T+++ L +  KI EA  L ++
Sbjct: 1   TFSILINGLVK-AGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEK 59

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           +    C+PT+ TY +L+NGLC+   +EEA+ L  ++   G  P+V TY+SL+DGL K   
Sbjct: 60  ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKR 119

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
           S +A +L + M S+    + V Y+ L+ GL + GK+ +A  +   M  QG  PD      
Sbjct: 120 SFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 179

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           +I   C  G+   A      M   G+ PN + +S        ++ GLCK    + A ++ 
Sbjct: 180 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS-------ALIHGLCKARKMDCALEML 232

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             M+    + D++TY+ LI   CK GD+  +    DE++  GC PD  T++ +++  
Sbjct: 233 AQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGF 289



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 8/239 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T++ LINGL ++  + +A  L +E  + G   ++ TY++++D L K     +A+ L++ +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
            +    P I TY+ LLNGLCK G+L+EA+++L ++   G  PD   Y  +I       + 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            EA     EM   G+  + + ++  IR       GL +     +A  VY +M ++    D
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIR-------GLLQAGKIPQASSVYKTMTSQGCVPD 173

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +T S++I   CK G I  + RI   +   G  P+E  +SA++  L   RKM  A E+L
Sbjct: 174 VVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEML 232



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 8/178 (4%)

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           T+S L+NGL K G L +A  +       G   D   Y  I+       K QEA   ++++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
              G TP        I  +N ++ GLCK      A  +   + +   + D +TY+SLI  
Sbjct: 61  TANGCTPT-------IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 113

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             KK    ++ ++  E+   G   D   ++A++  L    K+ QA+ +        CV
Sbjct: 114 LGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCV 171


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 229/428 (53%), Gaps = 21/428 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRG--YGRV 98
           G   D  +++ ++  L  A ++   E+L+D + +  C    +T +  +  +CR   + RV
Sbjct: 211 GCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERV 270

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H       V  +M E GC P  + Y T++  + +E  L++A      M   G++P V   
Sbjct: 271 HE------VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCY 324

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N ++K LC      +A  ++  EM  + C  D  T+  L++  C+ G +    EL ++M 
Sbjct: 325 NTVLKGLCSAERWKEAE-ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 383

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +  C P V+TYT++ING C+   ++EA+ L + M S G +PN  +Y+ ++ GLC  G   
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A EL+  MI +   PN VT++TL+N LCK+G +++A+E+L +M + G  PD   Y  +I
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
                 GK +EA   L+ MV  GI+PN +       I++++   L +    N+  Q++ +
Sbjct: 504 DGLGKAGKTEEALELLNVMVNKGISPNTI-------IYSSIACALSREGRVNKVIQMFDN 556

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +++ +I  D++ Y+++I+  CK+ +  ++      +V +GC+P+E T++ ++  L     
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 458 MRQAAELL 465
            ++A ELL
Sbjct: 617 AKEAQELL 624



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 183/364 (50%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +  K+  FGCE    SY  VL  L    +          M  +   P + + N LI
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLI 258

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+N G  +   ++  +M   GCTPD   Y T+I+G+C+ G +  A E+   M +   
Sbjct: 259 GYLCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y +++ GLC ++  +EA  L  EM  K    +  T++ L+D  C+ G   + +E
Sbjct: 318 KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+S    P+++TY+T++NG CKEG + EAV +L  M   G KP+   Y  ++   C
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G++ +A   + +M+  G  PN +T+       NT++  LCK     +A ++   M   
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTF-------NTLINFLCKKGLVEQAIELLKQMLVN 490

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             S D ++YS++I    K G   ++  +++ +V  G  P+   +S++  AL    ++ + 
Sbjct: 491 GCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKV 550

Query: 462 AELL 465
            ++ 
Sbjct: 551 IQMF 554



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 192/414 (46%), Gaps = 44/414 (10%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  + RG     R  DA+ V D+M   GC P P  Y  +L         + + R    M 
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G      + N+++ A+C+  G +D A  + R++   GC  D  +Y  ++ GLC   + 
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQ-GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRW 232

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            + +EL  EM    C+P +VT+ +LI  LC++   E    +  +M   G  P++  Y+++
Sbjct: 233 GDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATI 292

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA------------ 315
           +DG+CK G    A E+L  M S   +PN+V Y+T+L GLC   + +EA            
Sbjct: 293 IDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDC 352

Query: 316 -----------------------VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
                                  +E+L++M   G  PD   Y  +I+ FC  G   EA  
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
            L  M   G  PN +++++       V++GLC       A ++   M  +    + +T++
Sbjct: 413 LLKSMSSCGCKPNTVSYTI-------VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFN 465

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +LI   CKKG + ++  ++ +++++GC PD  ++S V+  L    K  +A ELL
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELL 519



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 160/316 (50%), Gaps = 7/316 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G + +   ++ ++  L SA +++ AE+LL  + ++ C   D+T +I +      G V R 
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR- 374

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              + + ++M   GC P   +Y TV+    +E  +  A    + M   G +P   S  ++
Sbjct: 375 --VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K LC     +DA  ++  +M  +GC P+  T+ TLIN LC+ G + +A EL K+M    
Sbjct: 433 LKGLCSAGRWVDAE-ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP +++Y+++I+GL ++   EEA+ L   M +KG+ PN   YSS+   L + G  ++ +
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI 551

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   +     R + V Y+ +++ LCK  +   A++    M   G  P+   Y  +I   
Sbjct: 552 QMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611

Query: 342 CDIGKYQEAANFLDEM 357
              G  +EA   L E+
Sbjct: 612 ASEGLAKEAQELLSEL 627



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 140/302 (46%), Gaps = 16/302 (5%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G   D  T++ +I+          A  LL  ++   C      +  + +G     R +
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +  +M + GC P P ++ T++  L ++  ++ A    + M   G  P + S + +I
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K +G  + A ++   M N+G +P++  Y ++   L R G++ +  ++F  ++    
Sbjct: 504 DGLGK-AGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTI 562

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V Y ++I+ LC+    + A+  F  M S G  PN  TY+ L+ GL   G + +A E
Sbjct: 563 RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622

Query: 283 LLQMMISKRH-RPNIVTYSTLLNGLCKEGK------LQEAV--------EILDRMKLQGL 327
           LL  + S+   R +++ +  + N   + GK      L  AV        EIL  +++Q L
Sbjct: 623 LLSELCSRGALRKHLMRHFGISNCTQENGKQKCEENLTSAVDNNYKLPIEILGFLEIQNL 682

Query: 328 KP 329
           +P
Sbjct: 683 RP 684



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 112/244 (45%), Gaps = 17/244 (6%)

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV Y +++ G C++  +  A RL   +    V PN +T+  ++ GLC  G  + A+E+L 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M  K   P    Y  +L   C+ G  + +V +L+ M  +G   D G    +++  C+ G
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQG 195

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
              EA   L ++   G   + +++       N V++GLC     + +     + +  + V
Sbjct: 196 CVDEAVGLLRKLAFFGCEADIVSY-------NAVLKGLCMA---KRWGDVEELMDEMVRV 245

Query: 406 DS----LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           D     +T+++LI   C+ G   +   ++ ++   GC PD   ++ ++  +     +  A
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVA 305

Query: 462 AELL 465
            E+L
Sbjct: 306 NEIL 309


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 228/456 (50%), Gaps = 14/456 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+   VL+L++AEK+ N AL IFDSA      G+ H    F  ++ +L+          +
Sbjct: 8   ISPTLVLKLLKAEKNPNAALAIFDSACQH--PGYAHPPFVFHHILRRLMDPKLVVHVGRI 65

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILV 131
           +D +  ++C  +ED+ LS  + Y +   P  A+ +F  M + FGC P  +S+ ++L   +
Sbjct: 66  VDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFI 125

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           E NQ + A  F+ + +  G+ P + + N+LIK  CK     +    +   M   G  PD 
Sbjct: 126 ESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKR-QFEKGKGLLTWMFENGLNPDI 184

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            +YGTLIN L + G + +A ELF EM  +  +P V+ Y  LI+G  +     +A  +++ 
Sbjct: 185 LSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKR 244

Query: 252 MRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           + ++  V P+V TY+ +++GLCK G   ++ME+   M      P++ T+S++++GL K G
Sbjct: 245 LLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAG 304

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
               A ++   M   GL PD   Y  ++S     GK  +     + M             
Sbjct: 305 NFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC------- 357

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
            +I  +N ++QGL       +A   +  +  R +  DS TY  LI   CK G ++K+ RI
Sbjct: 358 -NIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRI 416

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++E   +G   D   +S+++  L  +  + QA EL+
Sbjct: 417 LEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELI 452



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 206/417 (49%), Gaps = 14/417 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+++MI+ L    +   + ++ +R+ K +       F S+  G  +      A +VF +M
Sbjct: 257 TYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEM 316

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC--VASLNVLIKALCKNS 169
            E G  P  ++Y  +L+ L    +L   F  +  M +     C  + S N+LI+ L  N 
Sbjct: 317 IESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSK---NNCCNIVSYNMLIQGLLDNK 373

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             ++ A   ++ +  RG   DS TYG LINGLC+ G + +A  + +E E +        Y
Sbjct: 374 -KVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAY 432

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           +S+++GLC+   +E+A+ L  +M+    + N   ++SL++G  +     +A+ +L+ M S
Sbjct: 433 SSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKS 492

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   P +V+Y+T++NGLCK  +  +A   L  M  +GLKPD   Y  +I   C   K   
Sbjct: 493 KDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDM 552

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A N   + +   + P+       +++HN ++ GLC     + A +++  MR  +   D +
Sbjct: 553 ALNLWHQCINKRLKPD-------LQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLV 605

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           T+++++    K GD  ++ +I D ++  G  PD  +++     L    ++  A E L
Sbjct: 606 THNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFL 662



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 203/412 (49%), Gaps = 10/412 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TFS MI  L  A  F  AE +   + +         + ++  G  R  +      +++ M
Sbjct: 292 TFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVM 351

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            +  C     SY  ++  L++  +++ A  +++ + E G++    +  +LI  LCKN G 
Sbjct: 352 SKNNC-CNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKN-GY 409

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A +I  E  N G   D++ Y ++++GLC+ G + +A EL  +M+          + S
Sbjct: 410 LNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNS 469

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LING  ++  +EEA+ +  EM+SK   P V +Y+++++GLCK    S A   L+ M+ + 
Sbjct: 470 LINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEG 529

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+++TYS L++GLC+  K+  A+ +  +   + LKPD  ++  II   C   K   A 
Sbjct: 530 LKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVAL 589

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
               +M      P+ +T       HNT+++GL K  D   A +++  +    +  D ++Y
Sbjct: 590 EIFTQMRQVNCVPDLVT-------HNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISY 642

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +      C    +  +   + + +  G LP+  TW+ ++ A+ D + + + A
Sbjct: 643 NITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLVRAVVDDKPLMEYA 694



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 216/431 (50%), Gaps = 15/431 (3%)

Query: 39  TAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98
           T  + NG   D  ++  +I+ L  +     A +L D ++    +     +  +  G+ R 
Sbjct: 173 TWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRK 232

Query: 99  HRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
              + A  ++ ++  E    P+ ++Y  ++  L +  +L  +   +  M++    P + +
Sbjct: 233 GDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFT 292

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            + +I  L K +G  +AA K+F+EM   G +PD  TY  +++GL R GK+ +  EL+  M
Sbjct: 293 FSSMIHGLSK-AGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVM 351

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
               C   +V+Y  LI GL  +K VE+A+  ++ +  +G++ +  TY  L++GLCK G  
Sbjct: 352 SKNNCC-NIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYL 410

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           ++A+ +L+   ++    +   YS++++GLCK+G L++AVE++ +MK    K ++ ++  +
Sbjct: 411 NKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSL 470

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS 397
           I+ +    K +EA + L EM      P  +++       NT++ GLCK +  R    YLS
Sbjct: 471 INGYVRAFKLEEAISVLREMKSKDCAPTVVSY-------NTIINGLCKAE--RFSDAYLS 521

Query: 398 MRN---RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           ++      +  D +TYS LI   C+   +  +  +  + +     PD    + ++  L  
Sbjct: 522 LKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCT 581

Query: 455 RRKMRQAAELL 465
            +K+  A E+ 
Sbjct: 582 AQKVDVALEIF 592



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 134/268 (50%), Gaps = 10/268 (3%)

Query: 209 EAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           +A  LF+ M +   C+P + ++ S++N   +S    EA   F   ++ G+ PN+ TY+ L
Sbjct: 96  QALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNIL 155

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +   CK     +   LL  M      P+I++Y TL+N L K G L +AVE+ D M ++G+
Sbjct: 156 IKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGV 215

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVL-GGITPNRLTWSLHIRIHNTVVQGLCKT 386
            PD   Y  +I  F   G + +A      ++    + P+       +  +N ++ GLCK 
Sbjct: 216 NPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPS-------VETYNIMINGLCKL 268

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              + + +++  M+    S D  T+SS+I    K G+ + + ++  E++  G  PD  T+
Sbjct: 269 GKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTY 328

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKC 473
           +A+++ L+   K+ +  EL  +   N C
Sbjct: 329 NAMLSGLFRTGKLNKCFELWNVMSKNNC 356



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 108/265 (40%), Gaps = 16/265 (6%)

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEM-RSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           P V++ T ++  L   K+   A+ +F+   +  G     F +  ++  L           
Sbjct: 5   PKVISPTLVLKLLKAEKNPNAALAIFDSACQHPGYAHPPFVFHHILRRLMDPKLVVHVGR 64

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLYGKIISCF 341
           ++ +M ++R   +     + +    K     +A+ +   M  + G  P    +  +++ F
Sbjct: 65  IVDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAF 124

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ----VYLS 397
            +  +++EA  F       G++PN  T+++ I+I        CK    R F+    +   
Sbjct: 125 IESNQWREAELFFTYFQTAGMSPNLQTYNILIKIS-------CKK---RQFEKGKGLLTW 174

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M    ++ D L+Y +LI    K G++  +  + DE+ + G  PD   ++ ++     +  
Sbjct: 175 MFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGD 234

Query: 458 MRQAAELLLLELMNKCVEAEVDIQN 482
             +A E+    L    V   V+  N
Sbjct: 235 FVKANEIWKRLLTESSVYPSVETYN 259


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 190/334 (56%), Gaps = 9/334 (2%)

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            +    AF    +M ++G+QP   + + L+  L   +  +DA  K+F EM   G  PD  
Sbjct: 25  HDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV-KLFDEMVKMGYEPDVI 83

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY T+INGLC++G    A +L K+ME K C P VV Y+++I+ LC+ K + EAM    EM
Sbjct: 84  TYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEM 143

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            ++G+ PNV TYSS++ G C  G S++A  L + M+ +   P+ VT++ L++GL KEG +
Sbjct: 144 VNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMI 203

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA  + + M  +G++P+   Y  ++  +C   +  EA    + MV  G  P+       
Sbjct: 204 LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPS------- 256

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           +R +N +++G CK+   + A  +   M +++++ D++TYS+L+  FC+ G    + ++++
Sbjct: 257 VRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLE 316

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           E+   G LPD  T+S V+  L  +  + +A ELL
Sbjct: 317 EMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELL 350



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 213/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + ++ TFS +++ L S  +   A  L D + K   +     + +I  G  ++     A
Sbjct: 42  GLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMA 101

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  KM+E GC+P    Y T++  L ++  +  A  F   M   GI P V + + ++  
Sbjct: 102 IQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHG 161

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C N G  + A  +F++M  R   PD+ T+  L++GL + G I EA+ +F+ M  K   P
Sbjct: 162 FC-NLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEP 220

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY +L++G C    ++EA +LF  M  KG  P+V +Y+ L+ G CK G   +A  LL
Sbjct: 221 NVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLL 280

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  K   P+ VTYSTL+ G C++G+ Q+A ++L+ M+  GL PD   Y  ++   C  
Sbjct: 281 AEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQ 340

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G   EA   L  M    I PN       I I+  ++QG+C       A +++ ++  + I
Sbjct: 341 GHLDEAFELLKAMQESKIEPN-------IFIYTILIQGMCNFGKLEAARELFSNLFVKGI 393

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D +TY+ +I+   K G  +++  +  ++ + GCLP+  T++ ++           A  
Sbjct: 394 QPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGR 453

Query: 464 LL 465
           L+
Sbjct: 454 LI 455



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 217/465 (46%), Gaps = 67/465 (14%)

Query: 47  RHDNSTFSLMISKLVSANQ--FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           R D  T +++I+    +N   F  A  +L  + K         F ++  G     + +DA
Sbjct: 7   RPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDA 66

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++FD+M + G EP   +Y T++  L +     +A +  + M E G +P V   + +I +
Sbjct: 67  VKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDS 126

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+   +  A +   EM NRG +P+  TY ++++G C LG+  EA  LFK+M  +   P
Sbjct: 127 LCKDK-LITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMP 185

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT+  L++GL +   + EA  +FE M  KGVEPNV TY++LMDG C      +A +L 
Sbjct: 186 DTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLF 245

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M+ K   P++ +Y+ L+ G CK G++ EA  +L  M  + L PD   Y  ++  FC  
Sbjct: 246 NIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQD 305

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRIH 376
           G+ Q+A   L+EM   G+ P+ +T+S+                            +I I+
Sbjct: 306 GRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIY 365

Query: 377 NTVVQGLCK------------------TDP------------------NRAFQVYLSMRN 400
             ++QG+C                     P                  N A +++  M  
Sbjct: 366 TILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAV 425

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                +S TY+ +I  F + GD   + R+++E+V  G   D  T+
Sbjct: 426 HGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTF 470



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/327 (34%), Positives = 172/327 (52%), Gaps = 9/327 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + SI  G+  + R  +A  +F +M E    P   ++  ++  L +E  +  A   +  M 
Sbjct: 155 YSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMI 214

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G++P V + N L+   C  S  MD A K+F  M  +GC P   +Y  LI G C+ G+I
Sbjct: 215 EKGVEPNVNTYNALMDGYCSQS-QMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRI 273

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EAK L  EM  KA +P  VTY++L+ G CQ    ++A +L EEMRS G+ P++ TYS +
Sbjct: 274 DEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIV 333

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGLCK G   +A ELL+ M   +  PNI  Y+ L+ G+C  GKL+ A E+   + ++G+
Sbjct: 334 LDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGI 393

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT- 386
           +PD   Y  +IS     G   EA     +M + G  PN  T+       N ++QG  +  
Sbjct: 394 QPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTY-------NVIIQGFLRNG 446

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSL 413
           D + A ++   M  R  S DS T+  L
Sbjct: 447 DTSNAGRLIEEMVGRGFSADSSTFQML 473



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 136/263 (51%), Gaps = 10/263 (3%)

Query: 217 METKACSPTVVTYTSLINGLCQSK--SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           M+     P V T T LIN  C S       A  +   M   G++PN  T+S+L++GL   
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
                A++L   M+   + P+++TYST++NGLCK G    A+++L +M+ +G KP+  +Y
Sbjct: 61  AKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVY 120

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQ 393
             II   C      EA  FL EMV  GI+PN +T+S       +++ G C     N A  
Sbjct: 121 STIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYS-------SILHGFCNLGRSNEATS 173

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++  M  R++  D++T++ L+    K+G I ++  + + ++  G  P+  T++A+M    
Sbjct: 174 LFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYC 233

Query: 454 DRRKMRQAAELLLLELMNKCVEA 476
            + +M +A +L  + +   C  +
Sbjct: 234 SQSQMDEAQKLFNIMVRKGCAPS 256



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 1/218 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +++++I     + +   A+ LL  ++ +        + ++ +G+ +  RP DA ++ ++M
Sbjct: 259 SYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEM 318

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           + +G  P   +Y  VL  L ++  L  AF   + M+E  I+P +    +LI+ +C N G 
Sbjct: 319 RSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMC-NFGK 377

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++AA ++F  +  +G  PD  TY  +I+GL + G   EA ELF++M    C P   TY  
Sbjct: 378 LEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNV 437

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           +I G  ++     A RL EEM  +G   +  T+  L D
Sbjct: 438 IIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSD 475



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 11/160 (6%)

Query: 322 MKLQGLKPDAGLYGKIISCFC--DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           M L  ++PD      +I+CFC  +   +  A + L  M   G+ PN +T+S       T+
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFS-------TL 53

Query: 380 VQGL-CKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           + GL  K     A +++  M       D +TYS++I   CK G    + +++ ++   GC
Sbjct: 54  LNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGC 113

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            P+   +S ++ +L   + + +A E  L E++N+ +   V
Sbjct: 114 KPNVVVYSTIIDSLCKDKLITEAME-FLSEMVNRGISPNV 152


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 223/465 (47%), Gaps = 30/465 (6%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           K L  F         GF  +  TFS +I+      +   A  L+DR+ + K         
Sbjct: 119 KLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVN 178

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  G     R  +A+ + D+M ++GCE    +Y  VL  + +     LA   +R M E 
Sbjct: 179 TLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEER 238

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            I+  V   +++I +LCK+ G +D A  +F EM  +G   D   Y ++I GLC  G+  +
Sbjct: 239 SIKASVVQYSIVIDSLCKD-GNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDD 297

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
             ++ +EM  +   P VVT+++LI+   +   + EA  L+ EM ++G+ P+  TYSSL+D
Sbjct: 298 GAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLID 357

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G CK     +A ++L +M+SK   PNIVTYS L+N  CK  ++   + +   +  +GL  
Sbjct: 358 GFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVA 417

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS------------------- 370
           D   Y  ++  FC  GK   A     EMV  G+ P+ +T+                    
Sbjct: 418 DTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIF 477

Query: 371 ---------LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
                    L I I+N ++ G+C     + A+ ++ S+  + +  D LTY+ +I   CKK
Sbjct: 478 EKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKK 537

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G + ++  +  ++  DGC P + T++ ++ A      +  + EL+
Sbjct: 538 GSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELI 582



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 198/372 (53%), Gaps = 9/372 (2%)

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           + R  + L A  V  +  +FG EP   ++ T++     E ++  A      M E+  +P 
Sbjct: 114 FCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPN 173

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           V ++N LI  LC   G +  A  +   M   GC  +  TYG ++N +C+ G    A +LF
Sbjct: 174 VVTVNTLINGLCL-KGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLF 232

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           ++ME ++   +VV Y+ +I+ LC+  ++++A+ LF EM  KG++ +V  YSS++ GLC  
Sbjct: 233 RKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCND 292

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G      ++L+ MI +   PN+VT+S L++   KEGKL EA E+ + M  +G+ PD   Y
Sbjct: 293 GRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITY 352

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQ 393
             +I  FC   +  EA   LD MV  G  PN +T+S+       ++   CK    +   +
Sbjct: 353 SSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSI-------LINSYCKAKRVDNGMR 405

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++  + ++ +  D++TY++L+  FC+ G ++ +  +  E+V  G  P   T+  ++  L 
Sbjct: 406 LFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLC 465

Query: 454 DRRKMRQAAELL 465
           D  ++++A E+ 
Sbjct: 466 DNGELQKALEIF 477



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 213/447 (47%), Gaps = 44/447 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           +R +  T + +I+ L    +   A  L+DR+ K  C+  E  +  +     +      A+
Sbjct: 170 YRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALAL 229

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            +F KM+E   + +   Y  V+  L ++  L  A   +  M   GI+  V + + +I  L
Sbjct: 230 DLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGL 289

Query: 166 CKNSGTMDAAFKIFREM------PN-----------------------------RGCTPD 190
           C N G  D   K+ REM      PN                             RG  PD
Sbjct: 290 C-NDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPD 348

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           + TY +LI+G C+  ++ EA ++   M +K C P +VTY+ LIN  C++K V+  MRLF 
Sbjct: 349 TITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFC 408

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           E+ SKG+  +  TY++L+ G C+ G  + A EL Q M+S+   P++VTY  LL+GLC  G
Sbjct: 409 EISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 468

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +LQ+A+EI ++M+   +    G+Y  II   C+  K  +A +    + + G+ P+ LT+ 
Sbjct: 469 ELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTY- 527

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N ++ GLCK    + A  ++  M+    +    TY+ LI        +  S  +
Sbjct: 528 ------NVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVEL 581

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRR 456
           ++E+ + G   D  T   V+  L D R
Sbjct: 582 IEEMKMRGFAADASTIKMVVVMLSDGR 608



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 191/363 (52%), Gaps = 7/363 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +F+ M +    P+   +  + + +    +  L   F + M   GI+  + ++N++I
Sbjct: 52  EAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMI 111

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  AF +       G  P++ T+ TLING C  G++ EA  L   M     
Sbjct: 112 NCFCRKRKLL-FAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKY 170

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVT  +LINGLC    V EA+ L + M   G E N  TY  +++ +CK G ++ A++
Sbjct: 171 RPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALD 230

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M  +  + ++V YS +++ LCK+G L +A+ + + M+++G+K D   Y  II   C
Sbjct: 231 LFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLC 290

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           + G++ + A  L EM+   I PN +T+S  I +   V +G        A ++Y  M  R 
Sbjct: 291 NDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVF--VKEG----KLLEAKELYNEMVARG 344

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I+ D++TYSSLI  FCK+  + ++ +++D +V  GC P+  T+S ++ +    +++    
Sbjct: 345 IAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGM 404

Query: 463 ELL 465
            L 
Sbjct: 405 RLF 407



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 146/304 (48%), Gaps = 44/304 (14%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L NG+  + K+ EA +LF+ M      P+++ ++ L + + + K  +  +   +EM   G
Sbjct: 41  LRNGIVDI-KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNG 99

Query: 257 VEPNVF-----------------------------------TYSSLMDGLCKGGCSSQAM 281
           +E N++                                   T+S+L++G C  G  S+A+
Sbjct: 100 IEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAV 159

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            L+  M+  ++RPN+VT +TL+NGLC +G++ EA+ ++DRM   G + +   YG +++  
Sbjct: 160 ALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRM 219

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C  G    A +   +M    I  + + +S+       V+  LCK  + + A  ++  M  
Sbjct: 220 CKSGNTALALDLFRKMEERSIKASVVQYSI-------VIDSLCKDGNLDDALSLFNEMEM 272

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + I  D + YSS+I   C  G     A+++ E++    +P+  T+SA++       K+ +
Sbjct: 273 KGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLE 332

Query: 461 AAEL 464
           A EL
Sbjct: 333 AKEL 336



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 13/202 (6%)

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           ++A++L + MI  R  P+++ +S L + + +  +    +     M L G++ +      +
Sbjct: 51  NEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIM 110

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYL 396
           I+CFC   K   A + +   +  G  PN +T+S       T++ G C +   + A  +  
Sbjct: 111 INCFCRKRKLLFAFSVVGRALKFGFEPNTITFS-------TLINGFCLEGRVSEAVALVD 163

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M       + +T ++LI   C KG + ++  ++D +V  GC  +E T+  V+      R
Sbjct: 164 RMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLN-----R 218

Query: 457 KMRQAAELLLLELMNKCVEAEV 478
             +     L L+L  K  E  +
Sbjct: 219 MCKSGNTALALDLFRKMEERSI 240



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 16/180 (8%)

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           V+Y   L     + K+ EA+++ + M      P    + K+ S      +Y     F  E
Sbjct: 35  VSYKERLRNGIVDIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKE 94

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV----DSLTYSS 412
           M L GI  N  T        N ++   C+    R      S+  R++      +++T+S+
Sbjct: 95  MDLNGIEHNMYTM-------NIMINCFCR---KRKLLFAFSVVGRALKFGFEPNTITFST 144

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           LI  FC +G + ++  +VD +V     P+  T + ++  L  + ++ +A  L+L++ M K
Sbjct: 145 LINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEA--LVLIDRMVK 202


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 135/424 (31%), Positives = 217/424 (51%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T+  +++ L        A  LL ++ K K +    I+ +I  G  +     
Sbjct: 214 ARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMD 273

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F+KM+  G +P   +Y ++++ L    +   A R    M E  I P V + N LI
Sbjct: 274 DAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLI 333

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  K  G +  A K+F EM  R   P+  TY +LING C   ++ EA+++F  M +K C
Sbjct: 334 DAFAK-EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 392

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY +LI G C++K VEE M LF EM  +G+  N  TY++L+ GL + G    A +
Sbjct: 393 LPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 452

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M+S    P+I+TYS LL+GLCK GKL++A+ + + ++   ++P+   Y  +I   C
Sbjct: 453 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMC 512

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             GK ++  +    + L G+ PN       + I+ T++ G C+      A  ++  M+  
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPN-------VIIYTTMISGFCRKGLKEEADALFREMKED 565

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               DS  Y++LI    + GD   SA ++ E+   G + D  T S V+  L D R  +  
Sbjct: 566 GTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSY 625

Query: 462 AELL 465
            E+L
Sbjct: 626 LEML 629



 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/425 (32%), Positives = 221/425 (52%), Gaps = 19/425 (4%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNK---EKCDITEDIFLS-ICRGYGRVHRPLDAMRVF 108
           FS ++S +   N+F     L +++          T  I L+  CR   R   PL A+ V 
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCR---RSQLPL-ALAVL 139

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            KM + G EP   +  ++L       ++  A      M E+G +P   + N LI  L  +
Sbjct: 140 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLH 199

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +   +A   I R M  RGC PD +TYGT++NGLC+ G I  A  L K+ME       VV 
Sbjct: 200 NKASEAVALIDR-MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVI 258

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y ++I+GLC+ K +++A  LF +M +KG++P+VFTY+SL+  LC  G  S A  LL  MI
Sbjct: 259 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMI 318

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            ++  PN+VT+++L++   KEGKL EA ++ D M  + + P+   Y  +I+ FC   +  
Sbjct: 319 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 378

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDS 407
           EA      MV     P+ +T+       NT+++G CK        +++  M  R +  ++
Sbjct: 379 EAQQIFTLMVSKDCLPDVVTY-------NTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 431

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TY++LI    + GD   + +I  ++V DG  PD  T+S ++  L    K+ +A  L++ 
Sbjct: 432 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA--LVVF 489

Query: 468 ELMNK 472
           E + K
Sbjct: 490 EYLQK 494



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 192/364 (52%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M +    P+   +  +L+ + + N+  +       M+ +GI     + ++L+
Sbjct: 64  DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILL 123

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  PD  T  +L+NG C   +I EA  L  +M     
Sbjct: 124 NCFCRRS-QLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGY 182

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VT+ +LI+GL       EA+ L + M ++G +P++FTY ++++GLCK G    A+ 
Sbjct: 183 KPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 242

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M   +   N+V Y+T+++GLCK   + +A ++ ++M+ +G+KPD   Y  +ISC C
Sbjct: 243 LLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLC 302

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           + G++ +A+  L +M+   I PN +T+       N+++    K      A +++  M  R
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTF-------NSLIDAFAKEGKLIEAEKLFDEMIQR 355

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI  + +TY+SLI  FC    + ++ +I   +V   CLPD  T++ ++      +++ + 
Sbjct: 356 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEG 415

Query: 462 AELL 465
            EL 
Sbjct: 416 MELF 419



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 179/341 (52%), Gaps = 1/341 (0%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           FD        G + D  T++ +IS L +  ++  A  LL  + + K +     F S+   
Sbjct: 276 FDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDA 335

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           + +  + ++A ++FD+M +   +P   +Y +++      ++L  A + +  M      P 
Sbjct: 336 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 395

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           V + N LIK  CK +  ++   ++FREM  RG   ++ TY TLI GL + G    A+++F
Sbjct: 396 VVTYNTLIKGFCK-AKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 454

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           K+M +    P ++TY+ L++GLC+   +E+A+ +FE ++   +EPN++TY+ +++G+CK 
Sbjct: 455 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKA 514

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G      +L   +  K  +PN++ Y+T+++G C++G  +EA  +   MK  G  PD+G Y
Sbjct: 515 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCY 574

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
             +I      G    +A  + EM   G   +  T S+ I +
Sbjct: 575 NTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINM 615



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 161/313 (51%), Gaps = 9/313 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F EM      P    +  L++ + ++ K      L ++M+         TY+ 
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+N  C+   +  A+ +  +M   G EP++ T SSL++G C G   S+A+ L+  M+   
Sbjct: 122 LLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMG 181

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P+ VT++TL++GL    K  EAV ++DRM  +G +PD   YG +++  C  G    A 
Sbjct: 182 YKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 241

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           + L +M  G I  N       + I+NT++ GLCK    + AF ++  M  + I  D  TY
Sbjct: 242 SLLKKMEKGKIEAN-------VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 294

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +SLI+C C  G    ++R++ +++     P+  T+++++ A     K+ + AE L  E++
Sbjct: 295 NSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIE-AEKLFDEMI 353

Query: 471 NKCVEAEVDIQNQ 483
            + ++  +   N 
Sbjct: 354 QRSIDPNIVTYNS 366


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 218/415 (52%), Gaps = 12/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ M++    A Q   A  L+  +  E    T +  +    G GR     +A+ V D+M
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTA---NALAVLDEM 58

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
               C P   +Y  +L    + +  K A +    MR+ G  P + + NV++  +C+  G 
Sbjct: 59  LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ-EGR 117

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A +  + +P+ GC P++ +Y  ++ GLC   +  +A+EL  EM  K C P VVT+  
Sbjct: 118 VDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNM 177

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+ LC+   VE A+ + E++   G  PN  +Y+ L+   CK     +AM  L +M+S+ 
Sbjct: 178 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 237

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+IV+Y+TLL  LC+ G++  AVE+L ++K +G  P    Y  +I      GK +EA 
Sbjct: 238 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 297

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             L+EMV  G+ P+ +T+S       T+  GLC+ D    A + +  +++  I  +++ Y
Sbjct: 298 ELLNEMVSKGLQPDIITYS-------TIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 350

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I   CK+ + H +  +   ++ +GC+P+E T++ ++  L     +++A +LL
Sbjct: 351 NAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLL 405



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 182/339 (53%), Gaps = 7/339 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D  T+++++      + ++ A  LLD +  + C  T DI  +  +  G  +  R  DA+ 
Sbjct: 66  DVVTYTILLEATCKRSGYKQAMKLLDEMRDKGC--TPDIVTYNVVVNGICQEGRVDDAIE 123

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
               +  +GCEP   SY  VL  L    + + A      M + G  P V + N+LI  LC
Sbjct: 124 FLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLC 183

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           +  G ++ A ++  ++P  GCTP+S +Y  L++  C+  K+ +A      M ++ C P +
Sbjct: 184 R-KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDI 242

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           V+Y +L+  LC+S  V+ A+ L  +++ KG  P + +Y++++DGL K G + +A+ELL  
Sbjct: 243 VSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 302

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+SK  +P+I+TYST+  GLC+E ++++A+    +++  G++P+  LY  II   C   +
Sbjct: 303 MVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRE 362

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
              A +    M+  G  PN  T++  I I     +GL K
Sbjct: 363 THSAIDLFAYMIGNGCMPNESTYT--ILIEGLAYEGLIK 399



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 188/377 (49%), Gaps = 11/377 (2%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           LDA R    + E   EP   +Y T++  L    +   A      M      P V +  +L
Sbjct: 16  LDAARRL--VAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTIL 73

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           ++A CK SG    A K+  EM ++GCTPD  TY  ++NG+C+ G++ +A E  K + +  
Sbjct: 74  LEATCKRSG-YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYG 132

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P  V+Y  ++ GLC ++  E+A  L  EM  KG  PNV T++ L+  LC+ G    A+
Sbjct: 133 CEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPAL 192

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           E+L+ +      PN ++Y+ LL+  CK+ K+ +A+  LD M  +G  PD   Y  +++  
Sbjct: 193 EVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 252

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRN 400
           C  G+   A   L ++   G  P  +++       NTV+ GL K    + A ++   M +
Sbjct: 253 CRSGEVDVAVELLHQLKDKGCAPVLISY-------NTVIDGLTKAGKTKEALELLNEMVS 305

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + +  D +TYS++    C++  I  + R   ++   G  P+   ++A++  L  RR+   
Sbjct: 306 KGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHS 365

Query: 461 AAELLLLELMNKCVEAE 477
           A +L    + N C+  E
Sbjct: 366 AIDLFAYMIGNGCMPNE 382



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 175/323 (54%), Gaps = 13/323 (4%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N ++   C  +G +DAA ++  EMP     PD+YTY TLI GLC  G+   A  +  E
Sbjct: 2   AYNAMVAGYC-GAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  + C P VVTYT L+   C+    ++AM+L +EMR KG  P++ TY+ +++G+C+ G 
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
              A+E L+ + S    PN V+Y+ +L GLC   + ++A E++  M  +G  P+   +  
Sbjct: 118 VDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNM 177

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL 396
           +IS  C  G  + A   L+++   G TPN L++       N ++   CK         +L
Sbjct: 178 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSY-------NPLLHAFCKQKKMDKAMAFL 230

Query: 397 S-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M +R    D ++Y++L+T  C+ G++  +  ++ +L   GC P   +++ V+  L   
Sbjct: 231 DLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 290

Query: 456 RKMRQAAELLLLELMNKCVEAEV 478
            K ++A E LL E+++K ++ ++
Sbjct: 291 GKTKEALE-LLNEMVSKGLQPDI 312



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 155/313 (49%), Gaps = 1/313 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++++++ +    +   A + L  +    C+     +  + +G     R  DA
Sbjct: 97  GCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDA 156

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +M + GC P   ++  +++ L  +  ++ A      + + G  P   S N L+ A
Sbjct: 157 EELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHA 216

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK    MD A      M +RGC PD  +Y TL+  LCR G++  A EL  +++ K C+P
Sbjct: 217 FCKQK-KMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP 275

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +++Y ++I+GL ++   +EA+ L  EM SKG++P++ TYS++  GLC+      A+   
Sbjct: 276 VLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAF 335

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +     RPN V Y+ ++ GLCK  +   A+++   M   G  P+   Y  +I      
Sbjct: 336 GKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 395

Query: 345 GKYQEAANFLDEM 357
           G  +EA + LDE+
Sbjct: 396 GLIKEARDLLDEL 408



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 1/239 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+++IS L       PA ++L+++ K  C      +  +   + +  +   AM   D M
Sbjct: 174 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 233

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P   SY T+L  L    ++ +A      +++ G  P + S N +I  L K +G 
Sbjct: 234 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK-AGK 292

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A ++  EM ++G  PD  TY T+  GLCR  +I +A   F +++     P  V Y +
Sbjct: 293 TKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNA 352

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +I GLC+ +    A+ LF  M   G  PN  TY+ L++GL   G   +A +LL  + S+
Sbjct: 353 IILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 411



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 4/197 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K ++KA+   D   +    G   D  +++ +++ L  + +   A +LL ++  + C   
Sbjct: 220 QKKMDKAMAFLDLMVSR---GCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 276

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  +  +A+ + ++M   G +P   +Y T+ A L  E++++ A R + 
Sbjct: 277 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG 336

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            ++++GI+P     N +I  LCK   T  +A  +F  M   GC P+  TY  LI GL   
Sbjct: 337 KVQDMGIRPNTVLYNAIILGLCKRRET-HSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 395

Query: 205 GKIYEAKELFKEMETKA 221
           G I EA++L  E+ ++A
Sbjct: 396 GLIKEARDLLDELCSRA 412


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 128/423 (30%), Positives = 218/423 (51%), Gaps = 12/423 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++++IS      +   A  LLDR++     +T +  L      G++    +
Sbjct: 174 SGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLK---E 230

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V D+  +  C P   +Y  ++    +E+ +  A +    MR+ G +P V + NVLI 
Sbjct: 231 AMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLIN 290

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +CK  G +D A +    MP+ GC P+  T+  ++  +C  G+  +A++   EM  K CS
Sbjct: 291 GICK-EGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCS 349

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P+VVT+  LIN LC+   +  A+ + E+M   G  PN  +Y+ L+  LCK     +A+E 
Sbjct: 350 PSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEY 409

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+S+   P+IVTY+TLL  LCK+GK+  AVEIL+++  +G  P    Y  +I     
Sbjct: 410 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSK 469

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           +GK  +A   LDEM   G+ P+ +T+S       T+V GL +    + A   +  +    
Sbjct: 470 VGKTDDAIKLLDEMKGKGLKPDIITYS-------TLVGGLSREGKVDEAIAFFHDLEEMG 522

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  +++TY+S++   CK     ++   +  +V  GC P E ++  ++  L      ++A 
Sbjct: 523 VKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEAL 582

Query: 463 ELL 465
           ELL
Sbjct: 583 ELL 585



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 179/337 (53%), Gaps = 12/337 (3%)

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           LV   +L+  F+F   M   G  P + +   LI+ LCK   T  A  ++   + + G  P
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKAT-RVMEILEDSGAVP 178

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY  LI+G C+ G+I  A +L   M   + SP VVTY +++  LC S  ++EAM + 
Sbjct: 179 DVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVL 235

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +    +   P+V TY+ L++  CK     QAM+LL  M  K  +P++VTY+ L+NG+CKE
Sbjct: 236 DRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKE 295

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+L EA+  L+ M   G +P+   +  I+   C  G++ +A  FL EM+  G +P+ +T+
Sbjct: 296 GRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTF 355

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N ++  LC+     RA  V   M     + +SL+Y+ L+   CK   + ++  
Sbjct: 356 -------NILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIE 408

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +D +V  GC PD  T++ ++TAL    K+  A E+L
Sbjct: 409 YLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 445



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 172/316 (54%), Gaps = 12/316 (3%)

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N  ++ L +N G ++  FK   +M  RG  PD     +LI GLC+ GK ++A  + + +E
Sbjct: 114 NNHLRRLVRN-GELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILE 172

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P V+TY  LI+G C++  +  A++L + M    V P+V TY++++  LC  G   
Sbjct: 173 DSGAVPDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLK 229

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +AME+L   + +   P+++TY+ L+   CKE  + +A+++LD M+ +G KPD   Y  +I
Sbjct: 230 EAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLI 289

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS- 397
           +  C  G+  EA  FL+ M   G  PN +T       HN +++ +C T      + +L+ 
Sbjct: 290 NGICKEGRLDEAIRFLNHMPSYGCQPNVIT-------HNIILRSMCSTGRWMDAEKFLAE 342

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M  +  S   +T++ LI   C+KG I ++  +++++   GC P+  +++ ++ AL   +K
Sbjct: 343 MIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKK 402

Query: 458 MRQAAELLLLELMNKC 473
           M +A E L + +   C
Sbjct: 403 MERAIEYLDIMVSRGC 418



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 181/355 (50%), Gaps = 12/355 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++    E  V +A+ + D    +   G + D  T++++I+ +    +   A   
Sbjct: 248 ITYTILIEATCKESGVGQAMKLLDEMRDK---GCKPDVVTYNVLINGICKEGRLDEAIRF 304

Query: 73  LDRVNKEKCD---ITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           L+ +    C    IT +I L S+C       R +DA +   +M   GC P+  ++  ++ 
Sbjct: 305 LNHMPSYGCQPNVITHNIILRSMCS----TGRWMDAEKFLAEMIRKGCSPSVVTFNILIN 360

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            L  +  +  A      M + G  P   S N L+ ALCK+   M+ A +    M +RGC 
Sbjct: 361 FLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDK-KMERAIEYLDIMVSRGCY 419

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD  TY TL+  LC+ GK+  A E+  ++ +K CSP ++TY ++I+GL +    ++A++L
Sbjct: 420 PDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKL 479

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            +EM+ KG++P++ TYS+L+ GL + G   +A+     +     +PN +TY++++ GLCK
Sbjct: 480 LDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCK 539

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
             +   A++ L  M  +G KP    Y  +I      G  +EA   L+E+   G+ 
Sbjct: 540 ARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVV 594


>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 484

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSSLFRSVMESLF 484



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  +   
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMXRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKXGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/424 (31%), Positives = 214/424 (50%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T+  +++ L        A  LL ++ K K +    I+ +I           
Sbjct: 213 ARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVN 272

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M   G  P   +Y +++  L    +   A R    M E  I P V + + LI
Sbjct: 273 DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 332

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  K  G +  A K++ EM  R   PD +TY +LING C   ++ EAK +F+ M +K C
Sbjct: 333 DAFVK-EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY +LI G C++K VEE M LF EM  +G+  N  TY++L+ GL + G    A +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M+S    P+I+TYS LL+GLCK GKL++A+ + + ++   ++PD   Y  +I   C
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 511

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             GK ++  +    + L G+ PN       + I+ T++ G C+      A  ++  M+  
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPN-------VIIYTTMISGFCRKGLKEEADALFREMKED 564

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               +S TY++LI    + GD   SA ++ E+   G + D  T S V+  L D R  +  
Sbjct: 565 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSY 624

Query: 462 AELL 465
            E+L
Sbjct: 625 LEML 628



 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 142/440 (32%), Positives = 226/440 (51%), Gaps = 24/440 (5%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS------ICRGYGRVHRPLDAMR 106
           F+ ++S +   N+F     L +R+   +  I+ D++         CR   R   PL A+ 
Sbjct: 83  FNKLLSAIAKMNKFDLVISLGERMQNLR--ISYDLYSYNILINCFCR---RSQLPL-ALA 136

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           V  KM + G EP   +  ++L       ++  A      M  +  QP   + N LI  L 
Sbjct: 137 VLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLF 196

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
            ++   +A   I R M  RGC PD +TYGT++NGLC+ G I  A  L K+ME       V
Sbjct: 197 LHNKASEAVALIDR-MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV 255

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           V YT++I+ LC  K+V +A+ LF EM +KG+ PNV TY+SL+  LC  G  S A  LL  
Sbjct: 256 VIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSD 315

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           MI ++  PN+VT+S L++   KEGKL EA ++ D M  + + PD   Y  +I+ FC   +
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 375

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             EA +  + M+     PN +T+       NT+++G CK        +++  M  R +  
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTY-------NTLIKGFCKAKRVEEGMELFREMSQRGLVG 428

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++TY++LI    + GD   + +I  ++V DG  PD  T+S ++  L    K+ +A  L+
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA--LV 486

Query: 466 LLELMNKCVEAEVDIQNQDV 485
           + E + K  + E DI   ++
Sbjct: 487 VFEYLQKS-KMEPDIYTYNI 505



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 183/364 (50%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M +    P+   +  +L+ + + N+  L       M+ + I   + S N+LI
Sbjct: 63  DAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILI 122

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  PD  T  +L+NG C   +I EA  L  +M     
Sbjct: 123 NCFCRRS-QLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY 181

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VT+ +LI+GL       EA+ L + M ++G +P++FTY ++++GLCK G    A+ 
Sbjct: 182 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 241

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M   +   ++V Y+T+++ LC    + +A+ +   M  +G++P+   Y  +I C C
Sbjct: 242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           + G++ +A+  L +M+   I PN +T+S        ++    K      A ++Y  M  R
Sbjct: 302 NYGRWSDASRLLSDMIERKINPNVVTFS-------ALIDAFVKEGKLVEAEKLYDEMIKR 354

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI  D  TYSSLI  FC    + ++  + + ++   C P+  T++ ++      +++ + 
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 414

Query: 462 AELL 465
            EL 
Sbjct: 415 MELF 418



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 158/308 (51%), Gaps = 9/308 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F EM      P    +  L++ + ++ K      L + M+    S  + +Y  
Sbjct: 61  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C+   +  A+ +  +M   G EP++ T SSL++G C G   S+A+ L+  M    
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++PN VT++TL++GL    K  EAV ++DRM  +G +PD   YG +++  C  G    A 
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTY 410
           + L +M  G I  +       + I+ T++  LC   + N A  ++  M N+ I  + +TY
Sbjct: 241 SLLKKMEKGKIEAD-------VVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +SLI C C  G    ++R++ +++     P+  T+SA++ A     K+ + AE L  E++
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE-AEKLYDEMI 352

Query: 471 NKCVEAEV 478
            + ++ ++
Sbjct: 353 KRSIDPDI 360


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/424 (31%), Positives = 214/424 (50%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T+  +++ L        A  LL ++ K K +    I+ +I           
Sbjct: 197 ARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVN 256

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M   G  P   +Y +++  L    +   A R    M E  I P V + + LI
Sbjct: 257 DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 316

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  K  G +  A K++ EM  R   PD +TY +LING C   ++ EAK +F+ M +K C
Sbjct: 317 DAFVK-EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 375

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY +LI G C++K VEE M LF EM  +G+  N  TY++L+ GL + G    A +
Sbjct: 376 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 435

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M+S    P+I+TYS LL+GLCK GKL++A+ + + ++   ++PD   Y  +I   C
Sbjct: 436 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 495

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             GK ++  +    + L G+ PN       + I+ T++ G C+      A  ++  M+  
Sbjct: 496 KAGKVEDGWDLFCSLSLKGVKPN-------VIIYTTMISGFCRKGLKEEADALFREMKED 548

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               +S TY++LI    + GD   SA ++ E+   G + D  T S V+  L D R  +  
Sbjct: 549 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSY 608

Query: 462 AELL 465
            E+L
Sbjct: 609 LEML 612



 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 142/440 (32%), Positives = 226/440 (51%), Gaps = 24/440 (5%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS------ICRGYGRVHRPLDAMR 106
           F+ ++S +   N+F     L +R+   +  I+ D++         CR   R   PL A+ 
Sbjct: 67  FNKLLSAIAKMNKFDLVISLGERMQNLR--ISYDLYSYNILINCFCR---RSQLPL-ALA 120

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           V  KM + G EP   +  ++L       ++  A      M  +  QP   + N LI  L 
Sbjct: 121 VLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLF 180

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
            ++   +A   I R M  RGC PD +TYGT++NGLC+ G I  A  L K+ME       V
Sbjct: 181 LHNKASEAVALIDR-MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV 239

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           V YT++I+ LC  K+V +A+ LF EM +KG+ PNV TY+SL+  LC  G  S A  LL  
Sbjct: 240 VIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSD 299

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           MI ++  PN+VT+S L++   KEGKL EA ++ D M  + + PD   Y  +I+ FC   +
Sbjct: 300 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 359

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             EA +  + M+     PN +T+       NT+++G CK        +++  M  R +  
Sbjct: 360 LDEAKHMFELMISKDCFPNVVTY-------NTLIKGFCKAKRVEEGMELFREMSQRGLVG 412

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++TY++LI    + GD   + +I  ++V DG  PD  T+S ++  L    K+ +A  L+
Sbjct: 413 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA--LV 470

Query: 466 LLELMNKCVEAEVDIQNQDV 485
           + E + K  + E DI   ++
Sbjct: 471 VFEYLQKS-KMEPDIYTYNI 489



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 183/364 (50%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M +    P+   +  +L+ + + N+  L       M+ + I   + S N+LI
Sbjct: 47  DAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILI 106

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  PD  T  +L+NG C   +I EA  L  +M     
Sbjct: 107 NCFCRRS-QLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY 165

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VT+ +LI+GL       EA+ L + M ++G +P++FTY ++++GLCK G    A+ 
Sbjct: 166 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 225

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M   +   ++V Y+T+++ LC    + +A+ +   M  +G++P+   Y  +I C C
Sbjct: 226 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 285

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           + G++ +A+  L +M+   I PN +T+S        ++    K      A ++Y  M  R
Sbjct: 286 NYGRWSDASRLLSDMIERKINPNVVTFS-------ALIDAFVKEGKLVEAEKLYDEMIKR 338

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI  D  TYSSLI  FC    + ++  + + ++   C P+  T++ ++      +++ + 
Sbjct: 339 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 398

Query: 462 AELL 465
            EL 
Sbjct: 399 MELF 402



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 158/308 (51%), Gaps = 9/308 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F EM      P    +  L++ + ++ K      L + M+    S  + +Y  
Sbjct: 45  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C+   +  A+ +  +M   G EP++ T SSL++G C G   S+A+ L+  M    
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 164

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++PN VT++TL++GL    K  EAV ++DRM  +G +PD   YG +++  C  G    A 
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTY 410
           + L +M  G I  +       + I+ T++  LC   + N A  ++  M N+ I  + +TY
Sbjct: 225 SLLKKMEKGKIEAD-------VVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 277

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +SLI C C  G    ++R++ +++     P+  T+SA++ A     K+ + AE L  E++
Sbjct: 278 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE-AEKLYDEMI 336

Query: 471 NKCVEAEV 478
            + ++ ++
Sbjct: 337 KRSIDPDI 344


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/413 (30%), Positives = 210/413 (50%), Gaps = 12/413 (2%)

Query: 57  ISKLVSAN---QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
           +  LV AN       A  + + + K+ C   E  + ++  G   V R  + + +F KM+E
Sbjct: 8   LGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMRE 67

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
             C PT ++Y  ++  L E  +   A   +  MRE G +P + +  V+I A+CK +  ++
Sbjct: 68  DDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKET-KLE 126

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
              +I  EM  +G  P   TY  LI+G C+ G +  A+E+   M + +C+P   TY  LI
Sbjct: 127 EGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELI 186

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
            G C+ K+V  AM L  +M    + P+V TY+SL+ G CK G    A  LL +M      
Sbjct: 187 CGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVV 246

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P+  TYS  ++ LCK+G+++EA  + + +K +G+K +  +Y  +I  +C  GK  +A + 
Sbjct: 247 PDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSL 306

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
           LD M+     PN  T+       N ++ GLCK      A  +  SM  + +     TY+ 
Sbjct: 307 LDRMLTEDCLPNSSTY-------NALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTI 359

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           LI    K+GD   + RI+D++V  G  PD   ++A + A   R  +++A +++
Sbjct: 360 LIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMM 412



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 210/425 (49%), Gaps = 10/425 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           DVN A  +F+    +   G R +  +++ +I  L    +     ++  ++ ++ C  T  
Sbjct: 19  DVNSAFSVFNMMPKK---GCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVR 75

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  I        R ++A+ +F +M+E GCEP   +Y  ++  + +E +L+   R    M
Sbjct: 76  TYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEM 135

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G+ P V + N LI   CK  G ++AA +I   M +  C P+  TY  LI G CR   
Sbjct: 136 VEKGLVPSVPTYNALIDGYCK-EGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKN 194

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           ++ A  L  +M     +P+VVTY SLI+G C+   ++ A RL   M   GV P+ +TYS 
Sbjct: 195 VHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSV 254

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            +D LCK G   +A  L   +  K  + N V Y+ L++G CK GK+ +A  +LDRM  + 
Sbjct: 255 FIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTED 314

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             P++  Y  +I   C   K QEA   ++ M+  G+     T+++       +V  L + 
Sbjct: 315 CLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTI------LIVAMLKEG 368

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           D + A ++   M +     D   Y++ I  FC +G+I ++  ++  +   G +PD  T++
Sbjct: 369 DFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYT 428

Query: 447 AVMTA 451
            V+ A
Sbjct: 429 LVIDA 433



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 176/335 (52%), Gaps = 45/335 (13%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +++AF +F  MP +GC  +  +Y  LI+GLC +G++ E   +FK+M    C PTV TYT 
Sbjct: 20  VNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTV 79

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +++ L +S    EA+ LF EMR +G EPN+ TY+ +++ +CK     +   +L  M+ K 
Sbjct: 80  IVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKG 139

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++ TY+ L++G CKEG ++ A EILD M      P+   Y ++I  FC       A 
Sbjct: 140 LVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAM 199

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD------------------PNR-AF 392
             L +M+   +TP+ +T+       N+++ G CK                    P++  +
Sbjct: 200 ALLSKMLESRLTPSVVTY-------NSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTY 252

Query: 393 QVYL-----------------SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            V++                 S++ + I  + + Y++LI  +CK G +  +  ++D ++ 
Sbjct: 253 SVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLT 312

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           + CLP+  T++A++  L   RK+++A  LLL+E M
Sbjct: 313 EDCLPNSSTYNALIDGLCKERKVQEA--LLLMESM 345



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 197/422 (46%), Gaps = 13/422 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+++MI+ +    +      +LD + ++    +   + ++  GY +      A  + D M
Sbjct: 111 TYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLM 170

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
               C P  ++Y  ++     +  +  A      M E  + P V + N LI   CK  G 
Sbjct: 171 HSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCK-IGY 229

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D+A+++   M   G  PD +TY   I+ LC+ G+I EA  LF  ++ K      V YT+
Sbjct: 230 LDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTA 289

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G C++  +++A  L + M ++   PN  TY++L+DGLCK     +A+ L++ MI K 
Sbjct: 290 LIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKG 349

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +  + TY+ L+  + KEG    A  ILD+M   G +PD  +Y   I  FC  G  +EA 
Sbjct: 350 LKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAE 409

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
           + +  M   G+ P+ LT++L I  +     GL   +P  AF V   M +        TYS
Sbjct: 410 DMMSMMFERGVMPDALTYTLVIDAYG----GLGLLNP--AFDVLKRMFDTGCDPSHHTYS 463

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            LI    K+    K   +     L   +P+   + A +  +W   K   A EL    L +
Sbjct: 464 CLIKHLLKEELTKKYKNV----ALCDSIPN--VFFADVADVWKMMKFETALELFEKMLEH 517

Query: 472 KC 473
            C
Sbjct: 518 GC 519



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 204/478 (42%), Gaps = 79/478 (16%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR---VHRPLDAMRVF 108
           T++ +I           A+++LD ++   C+  E  +  +  G+ R   VHR   AM + 
Sbjct: 146 TYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHR---AMALL 202

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            KM E    P+  +Y +++    +   L  A+R    M E G+ P   + +V I  LCK 
Sbjct: 203 SKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCK- 261

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G ++ A  +F  +  +G   +   Y  LI+G C+ GK+ +A  L   M T+ C P   T
Sbjct: 262 KGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSST 321

Query: 229 YTSLINGLCQSKSVEEAM-----------------------------------RLFEEMR 253
           Y +LI+GLC+ + V+EA+                                   R+ ++M 
Sbjct: 322 YNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMV 381

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           S G +P+V+ Y++ +   C  G   +A +++ MM  +   P+ +TY+ +++     G L 
Sbjct: 382 SSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLN 441

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIIS----------------C-------FCDIG----- 345
            A ++L RM   G  P    Y  +I                 C       F D+      
Sbjct: 442 PAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKM 501

Query: 346 -KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            K++ A    ++M+  G +PN       I  +  ++ GLCK      A +++  M  R +
Sbjct: 502 MKFETALELFEKMLEHGCSPN-------INTYAKLIIGLCKVGRLGVAQKLFDHMNERGV 554

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           S     Y+SL+ C C+ G    + R+V  ++  G LP   + + +   L++     +A
Sbjct: 555 SPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKA 612



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 142/279 (50%), Gaps = 17/279 (6%)

Query: 197 LINGLCRLGKIYEAK---------ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           ++NG C+LG + EA           +F  M  K C    V+YT+LI+GLC+   V+E + 
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +F++MR     P V TY+ ++  L + G   +A+ L   M  +   PNI TY+ ++N +C
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           KE KL+E   ILD M  +GL P    Y  +I  +C  G  + A   LD M      PN  
Sbjct: 121 KETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNE- 179

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
                 R +N ++ G C K + +RA  +   M    ++   +TY+SLI   CK G +  +
Sbjct: 180 ------RTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSA 233

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            R+++ +  +G +PD+ T+S  +  L  + ++ +A  L 
Sbjct: 234 YRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLF 272



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 189/438 (43%), Gaps = 36/438 (8%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T+S+ I  L    +   A  L + + ++     E I+ ++  GY +  +  D
Sbjct: 243 NGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDD 302

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  + D+M    C P   +Y  ++  L +E +++ A      M + G++  V +  +LI 
Sbjct: 303 ANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIV 362

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A+ K  G  D A +I  +M + G  PD Y Y   I+  C  G I EA+++   M  +   
Sbjct: 363 AMLK-EGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVM 421

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK---------- 273
           P  +TYT +I+       +  A  + + M   G +P+  TYS L+  L K          
Sbjct: 422 PDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNV 481

Query: 274 GGCSS-------------------QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             C S                    A+EL + M+     PNI TY+ L+ GLCK G+L  
Sbjct: 482 ALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGV 541

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A ++ D M  +G+ P   +Y  +++C C++G Y +A   +  M+  G  P  L  SL++ 
Sbjct: 542 AQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLP--LLESLNVL 599

Query: 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
                 +G       +A  V+ ++     + D + +  LI    K G     + ++  + 
Sbjct: 600 FCGLYEEG----SKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVME 655

Query: 435 LDGCLPDEGTWSAVMTAL 452
             GC     T+  ++  L
Sbjct: 656 ARGCQIHPQTYRMLIEGL 673



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 150/341 (43%), Gaps = 17/341 (4%)

Query: 3   VKTMFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISK 59
           +++M +   K T      LI A   E D + A  I D   +   +G++ D   ++  I  
Sbjct: 342 MESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVS---SGYQPDVYIYTAFIHA 398

Query: 60  LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
             +    + AED++  + +         +  +   YG +     A  V  +M + GC+P+
Sbjct: 399 FCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPS 458

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM--DAAFK 177
             +Y  ++  L++E   K         +   +  C +  NV    +      M  + A +
Sbjct: 459 HHTYSCLIKHLLKEELTK---------KYKNVALCDSIPNVFFADVADVWKMMKFETALE 509

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +F +M   GC+P+  TY  LI GLC++G++  A++LF  M  +  SP+   Y SL+N  C
Sbjct: 510 LFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCC 569

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +     +A+RL   M   G  P + + + L  GL + G   +A  +   ++   +  + V
Sbjct: 570 ELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEV 629

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            +  L++GL K G      E+L  M+ +G +     Y  +I
Sbjct: 630 AWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLI 670


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 230/460 (50%), Gaps = 62/460 (13%)

Query: 35   FDSATAEY----ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN------------- 77
            F+ A+A +    A   + D  TF  +I  L  A Q   A D+LD +              
Sbjct: 583  FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNA 642

Query: 78   -----------KEKCDITEDIFLSICR----GYG-------RVHRPLDAMRVFDKMKEFG 115
                       +E C   E++  S C      YG       R  R  DA+++  ++K FG
Sbjct: 643  LVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFG 702

Query: 116  CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
             +P   +Y  ++  L +  Q + A      M   G  P V + N LI +LCK +G ++ A
Sbjct: 703  WDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCK-AGDLEEA 761

Query: 176  FKIFREMPNR---GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS--PTVVTYT 230
             ++  +M +R    C P+  TY  LINGLC++G+I EA+EL +EM  K+C   P ++TY 
Sbjct: 762  RRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYN 821

Query: 231  SLINGLCQSKSVEEAMRLFEEMR--SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
            S ++GLC+   + EA  L   +R  S  V P+  T+S+L+DGLCK G + +A  +   MI
Sbjct: 822  SFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMI 881

Query: 289  SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +  + PN+VTY+ L+NGLCK  K++ A  +++ M  +G+ PD   Y  ++  FC      
Sbjct: 882  AGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVD 941

Query: 349  EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMR-NRSISVD 406
            EA   L  M   G TPN +T+       N+++ GLCK+D    AFQ++  M     ++ D
Sbjct: 942  EALELLHGMASRGCTPNVVTF-------NSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPD 994

Query: 407  SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             +TY +LI    + G   ++     E++LD  +PD  T++
Sbjct: 995  KITYCTLIDGLFRTGWAGQA-----EVLLDA-MPDPDTYA 1028



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 238/458 (51%), Gaps = 23/458 (5%)

Query: 29  NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88
            +A  +FD    ++  G   D  T+  +I  L    +   AE LLD +     D     F
Sbjct: 482 GEAFQMFDDMALKH--GLVPDKITYCTLIDGLFRTGRAGQAEALLDAMP----DPDTYAF 535

Query: 89  LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
                G  ++     A++V+++M E    P   ++  ++A   +    + A   +  M  
Sbjct: 536 NCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVA 595

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
             +QP V +   LI  LCK +G ++AA  I   M N G  P+  TY  L++GLC+ G+I 
Sbjct: 596 KNLQPDVMTFGALIDGLCK-AGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIE 654

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           EA +  +EM +  C P  +TY SL+  LC++   ++A++L  E++S G +P+  TY+ L+
Sbjct: 655 EACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILV 714

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DGL K G + QA+ +L+ M+ K H P++VTY+TL++ LCK G L+EA  +   M  +  +
Sbjct: 715 DGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSR 774

Query: 329 ---PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG--ITPNRLTWSLHIRIHNTVVQGL 383
              P+   Y  +I+  C +G+  EA   + EM+     + PN +T+       N+ + GL
Sbjct: 775 CCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITY-------NSFLDGL 827

Query: 384 CKTDP-NRAFQVYLSMRNRS--ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           CK      A ++  S+R+ S  +S D++T+S+LI   CK G   ++  + D+++  G +P
Sbjct: 828 CKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVP 887

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +  T++ +M  L    KM + A  ++  +++K V  +V
Sbjct: 888 NVVTYNVLMNGLCKTDKMER-AHAMIESMVDKGVTPDV 924



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 201/372 (54%), Gaps = 17/372 (4%)

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVL-AILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           P  A+ +F       C P   +Y T+L A       ++    F+R +R       VA  N
Sbjct: 127 PAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIRSSSRS--VADYN 184

Query: 160 VLIKALCKNSGTMDAAFKIFR-EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           +++++LC+ +G    A +IFR EM   G  P   TY T+INGLC+  ++    ELF+E+ 
Sbjct: 185 IVLQSLCR-AGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 243

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            +   P VVTY +LI+ LC++  +EEA RL  +M S+   PNV TYS L++GLCK G   
Sbjct: 244 ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRID 303

Query: 279 QAMELLQMMISKRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK--PDAGLY 334
           +A EL+Q M  K     PNI+TY++ L+GLCK+    EA E++  ++   L+  PD   +
Sbjct: 304 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 363

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQ 393
             +I   C  G+  EA +  D+M+ GG  PN +T+       N +V GLCK D   RA  
Sbjct: 364 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITY-------NALVNGLCKADKMERAHA 416

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +  SM ++ ++ D +TYS L+  FCK   + ++  ++  +   GC P+  T+++++  L 
Sbjct: 417 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLC 476

Query: 454 DRRKMRQAAELL 465
              +  +A ++ 
Sbjct: 477 KSDRSGEAFQMF 488



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/460 (30%), Positives = 230/460 (50%), Gaps = 28/460 (6%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA----EDLL 73
           VLQ +    +  +AL IF    A   +G      T++ +I+ L  +N+        E+L+
Sbjct: 186 VLQSLCRAGETARALEIFRGEMAR--DGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 243

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           +R +         +  S+C+  G +    +A R+   M    C P   +Y  ++  L + 
Sbjct: 244 ERGHHPDVVTYNTLIDSLCKA-GDLE---EARRLHGDMSSRSCVPNVVTYSVLINGLCKV 299

Query: 134 NQLKLAFRFYRHM--REIGIQPCVASLNVLIKALCKNSGTMDAA--FKIFREMPNRGCTP 189
            ++  A    + M  +   + P + + N  +  LCK S T +A    +  R+   R  +P
Sbjct: 300 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR-VSP 358

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+ T+ TLI+GLC+ G+I EA  +F +M      P V+TY +L+NGLC++  +E A  + 
Sbjct: 359 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 418

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           E M  KGV P+V TYS L+D  CK     +A+ELL  M S+   PN+VT++++++GLCK 
Sbjct: 419 ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS 478

Query: 310 GKLQEAVEILDRMKLQ-GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            +  EA ++ D M L+ GL PD   Y  +I      G+  +A   LD M      P+  T
Sbjct: 479 DRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAM------PDPDT 532

Query: 369 WSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           ++      N  + GL K  D +RA QVY  M    +  D +T++ LI   CK G+  +++
Sbjct: 533 YAF-----NCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQAS 587

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            + +E+V     PD  T+ A++  L    ++  A ++L L
Sbjct: 588 ALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDL 627



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 234/452 (51%), Gaps = 25/452 (5%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++A  +FD   A    G+  +  T++ +++ L  A++   A  +++ +  +   +T D+
Sbjct: 376 IDEACSVFDDMIA---GGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG--VTPDV 430

Query: 88  --FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             +  +   + +  R  +A+ +   M   GC P   ++ +++  L + ++   AF+ +  
Sbjct: 431 ITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDD 490

Query: 146 MR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
           M  + G+ P   +   LI  L + +G    A  +   MP+    PD+Y +   INGL +L
Sbjct: 491 MALKHGLVPDKITYCTLIDGLFR-TGRAGQAEALLDAMPD----PDTYAFNCCINGLSKL 545

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G +  A +++  M      P  VT+  LI G C++ + E+A  LFEEM +K ++P+V T+
Sbjct: 546 GDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTF 605

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            +L+DGLCK G    A ++L +M +    PN+VTY+ L++GLCK G+++EA + L+ M  
Sbjct: 606 GALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVS 665

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G  PD+  YG ++   C   +  +A   + E+   G  P+ +T+       N +V GL 
Sbjct: 666 SGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTY-------NILVDGLW 718

Query: 385 KT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL---VLDGCLP 440
           K+    +A  V   M  +    D +TY++LI   CK GD+ ++ R+  ++   V   C+P
Sbjct: 719 KSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVP 778

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           +  T+S ++  L    ++ +A E L+ E+M K
Sbjct: 779 NVVTYSVLINGLCKVGRIDEARE-LIQEMMRK 809



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 163/330 (49%), Gaps = 34/330 (10%)

Query: 52   TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFD 109
            T+S++I+ L    +   A +L+  + ++ CD+  +I  + S   G  +     +A  +  
Sbjct: 782  TYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMR 841

Query: 110  KMKEFGCEPTPKS--YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
             +++     +P +  + T++  L +  Q   A   +  M   G  P V + NVL+  LCK
Sbjct: 842  SLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCK 901

Query: 168  NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             +  M+ A  +   M ++G TPD  TY  L++  C+   + EA EL   M ++ C+P VV
Sbjct: 902  -TDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVV 960

Query: 228  TYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T+ S+I+GLC+S    EA ++F++M  K G+ P+  TY +L+DGL + G + QA  LL  
Sbjct: 961  TFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDA 1020

Query: 287  M--------------ISKR-------HR-------PNIVTYSTLLNGLCKEGKLQEAVEI 318
            M              +SK        HR       P+ VT++ L+ G CK G  ++A  +
Sbjct: 1021 MPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASAL 1080

Query: 319  LDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
             + M  + L+PD   +G +I   C  G+ +
Sbjct: 1081 FEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 145/322 (45%), Gaps = 69/322 (21%)

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL----------------- 267
           T+ ++   +N L +S S  +A+ LF         PN FTYS+L                 
Sbjct: 110 TIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGF 169

Query: 268 -----------------MDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCKE 309
                            +  LC+ G +++A+E+ +  +++    P IVTY+T++NGLCK 
Sbjct: 170 FRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS 229

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
            +L   +E+ + +  +G  PD   Y  +I   C  G  +EA     +M      PN +T+
Sbjct: 230 NELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTY 289

Query: 370 SL------------------------------HIRIHNTVVQGLCKTD-PNRAFQVYLSM 398
           S+                              +I  +N+ + GLCK      A ++  S+
Sbjct: 290 SVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSL 349

Query: 399 RNRS--ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
           R+ S  +S D++T+S+LI   CK G I ++  + D+++  G +P+  T++A++  L    
Sbjct: 350 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 409

Query: 457 KMRQAAELLLLELMNKCVEAEV 478
           KM + A  ++  +++K V  +V
Sbjct: 410 KMER-AHAMIESMVDKGVTPDV 430



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 126/250 (50%), Gaps = 16/250 (6%)

Query: 29   NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI- 87
            ++A  +FD   A    G+  +  T++++++ L   ++   A  +++ +  +   +T D+ 
Sbjct: 871  DEACNVFDDMIA---GGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKG--VTPDVI 925

Query: 88   -FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
             +  +   + +     +A+ +   M   GC P   ++ +++  L + +Q   AF+ +  M
Sbjct: 926  TYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDM 985

Query: 147  R-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
              + G+ P   +   LI  L + +G    A  +   MP+    PD+Y +   INGL +LG
Sbjct: 986  TLKHGLAPDKITYCTLIDGLFR-TGWAGQAEVLLDAMPD----PDTYAFNCCINGLSKLG 1040

Query: 206  KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
             +  A     E+E     P  VT+  LI G C++ + E+A  LFEEM +K ++P+V T+ 
Sbjct: 1041 DVSRALHRMLELEL---VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFG 1097

Query: 266  SLMDGLCKGG 275
            +L+DGLCK G
Sbjct: 1098 ALIDGLCKAG 1107



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 10/212 (4%)

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G +  +F+++  ++ L K G  ++A++L +  +  R RPN  TYSTLL    K G   E 
Sbjct: 106 GFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVER 165

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN-FLDEMVLGGITPNRLTWSLHIR 374
                R      +  A  Y  ++   C  G+   A   F  EM   G+ P  +T+     
Sbjct: 166 TLGFFRRIRSSSRSVAD-YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTY----- 219

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             NT++ GLCK++      +++  +  R    D +TY++LI   CK GD+ ++ R+  ++
Sbjct: 220 --NTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDM 277

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
               C+P+  T+S ++  L    ++ +A EL+
Sbjct: 278 SSRSCVPNVVTYSVLINGLCKVGRIDEARELI 309


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 229/428 (53%), Gaps = 21/428 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRG--YGRV 98
           G   D  +++ ++  L  A ++   E+L+D + +  C    +T +  +  +CR   + RV
Sbjct: 211 GCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERV 270

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H       V  +M E GC P  + Y T++  + +E  L++A      M   G++P V   
Sbjct: 271 HE------VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCY 324

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N ++K LC      +A  ++  EM  + C  D  T+  L++  C+ G +    EL ++M 
Sbjct: 325 NTVLKGLCSAERWKEAE-ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 383

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +  C P V+TYT++ING C+   ++EA+ L + M S G +PN  +Y+ ++ GLC  G   
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A EL+  MI +   PN VT++TL+N LCK+G +++A+E+L +M + G  PD   Y  +I
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
                 GK +EA   L+ MV  GI+PN +       I++++   L +    N+  Q++ +
Sbjct: 504 DGLGKAGKTEEALELLNVMVNKGISPNTI-------IYSSIACALSREGRVNKVIQMFDN 556

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +++ +I  D++ Y+++I+  CK+ +  ++      +V +GC+P+E T++ ++  L     
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 458 MRQAAELL 465
            ++A ELL
Sbjct: 617 AKEAQELL 624



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 183/364 (50%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +  K+  FGCE    SY  VL  L    +          M  +   P + + N LI
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLI 258

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+N G  +   ++  +M   GCTPD   Y T+I+G+C+ G +  A E+   M +   
Sbjct: 259 GYLCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y +++ GLC ++  +EA  L  EM  K    +  T++ L+D  C+ G   + +E
Sbjct: 318 KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+S    P+++TY+T++NG CKEG + EAV +L  M   G KP+   Y  ++   C
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G++ +A   + +M+  G  PN +T+       NT++  LCK     +A ++   M   
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTF-------NTLINFLCKKGLVEQAIELLKQMLVN 490

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             S D ++YS++I    K G   ++  +++ +V  G  P+   +S++  AL    ++ + 
Sbjct: 491 GCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKV 550

Query: 462 AELL 465
            ++ 
Sbjct: 551 IQMF 554



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 192/414 (46%), Gaps = 44/414 (10%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  + RG     R  DA+ V D+M   GC P P  Y  +L         + + R    M 
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G      + N+++ A+C+  G +D A  + R++   GC  D  +Y  ++ GLC   + 
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQ-GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRW 232

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            + +EL  EM    C+P +VT+ +LI  LC++   E    +  +M   G  P++  Y+++
Sbjct: 233 GDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATI 292

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA------------ 315
           +DG+CK G    A E+L  M S   +PN+V Y+T+L GLC   + +EA            
Sbjct: 293 IDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDC 352

Query: 316 -----------------------VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
                                  +E+L++M   G  PD   Y  +I+ FC  G   EA  
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
            L  M   G  PN +++++       V++GLC       A ++   M  +    + +T++
Sbjct: 413 LLKSMSSCGCKPNTVSYTI-------VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFN 465

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +LI   CKKG + ++  ++ +++++GC PD  ++S V+  L    K  +A ELL
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELL 519



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 160/316 (50%), Gaps = 7/316 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G + +   ++ ++  L SA +++ AE+LL  + ++ C   D+T +I +      G V R 
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR- 374

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              + + ++M   GC P   +Y TV+    +E  +  A    + M   G +P   S  ++
Sbjct: 375 --VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K LC     +DA  ++  +M  +GC P+  T+ TLIN LC+ G + +A EL K+M    
Sbjct: 433 LKGLCSAGRWVDAE-ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP +++Y+++I+GL ++   EEA+ L   M +KG+ PN   YSS+   L + G  ++ +
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI 551

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   +     R + V Y+ +++ LCK  +   A++    M   G  P+   Y  +I   
Sbjct: 552 QMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611

Query: 342 CDIGKYQEAANFLDEM 357
              G  +EA   L E+
Sbjct: 612 ASEGLAKEAQELLSEL 627



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 1/248 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G   D  T++ +I+          A  LL  ++   C      +  + +G     R +
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +  +M + GC P P ++ T++  L ++  ++ A    + M   G  P + S + +I
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K +G  + A ++   M N+G +P++  Y ++   L R G++ +  ++F  ++    
Sbjct: 504 DGLGK-AGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTI 562

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V Y ++I+ LC+    + A+  F  M S G  PN  TY+ L+ GL   G + +A E
Sbjct: 563 RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622

Query: 283 LLQMMISK 290
           LL  + S+
Sbjct: 623 LLSELCSR 630



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 112/244 (45%), Gaps = 17/244 (6%)

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV Y +++ G C++  +  A RL   +    V PN +T+  ++ GLC  G  + A+E+L 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M  K   P    Y  +L   C+ G  + +V +L+ M  +G   D G    +++  C+ G
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQG 195

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
              EA   L ++   G   + +++       N V++GLC     + +     + +  + V
Sbjct: 196 CVDEAVGLLRKLAFFGCEADIVSY-------NAVLKGLCMA---KRWGDVEELMDEMVRV 245

Query: 406 DS----LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           D     +T+++LI   C+ G   +   ++ ++   GC PD   ++ ++  +     +  A
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVA 305

Query: 462 AELL 465
            E+L
Sbjct: 306 NEIL 309


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 229/428 (53%), Gaps = 21/428 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRG--YGRV 98
           G   D  +++ ++  L  A ++   E+L+D + +  C    +T +  +  +CR   + RV
Sbjct: 211 GCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERV 270

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H       V  +M E GC P  + Y T++  + +E  L++A      M   G++P V   
Sbjct: 271 HE------VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCY 324

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N ++K LC      +A  ++  EM  + C  D  T+  L++  C+ G +    EL ++M 
Sbjct: 325 NTVLKGLCSAERWKEAE-ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 383

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +  C P V+TYT++ING C+   ++EA+ L + M S G +PN  +Y+ ++ GLC  G   
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A EL+  MI +   PN VT++TL+N LCK+G +++A+E+L +M + G  PD   Y  +I
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
                 GK +EA   L+ MV  GI+PN +       I++++   L +    N+  Q++ +
Sbjct: 504 DGLGKAGKTEEALELLNVMVNKGISPNTI-------IYSSIACALSREGRVNKVIQMFDN 556

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +++ +I  D++ Y+++I+  CK+ +  ++      +V +GC+P+E T++ ++  L     
Sbjct: 557 IKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 458 MRQAAELL 465
            ++A ELL
Sbjct: 617 AKEAQELL 624



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 183/364 (50%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +  K+  FGCE    SY  VL  L    +          M  +   P + + N LI
Sbjct: 199 EAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLI 258

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+N G  +   ++  +M   GCTPD   Y T+I+G+C+ G +  A E+   M +   
Sbjct: 259 GYLCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y +++ GLC ++  +EA  L  EM  K    +  T++ L+D  C+ G   + +E
Sbjct: 318 KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+S    P+++TY+T++NG CKEG + EAV +L  M   G KP+   Y  ++   C
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLC 437

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G++ +A   + +M+  G  PN +T+       NT++  LCK     +A ++   M   
Sbjct: 438 SAGRWVDAEELMSQMIQQGCPPNPVTF-------NTLINFLCKKGLVEQAIELLKQMLVN 490

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             S D ++YS++I    K G   ++  +++ +V  G  P+   +S++  AL    ++ + 
Sbjct: 491 GCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKV 550

Query: 462 AELL 465
            ++ 
Sbjct: 551 IQMF 554



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 192/414 (46%), Gaps = 44/414 (10%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  + RG     R  DA+ V D+M   GC P P  Y  +L         + + R    M 
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G      + N+++ A+C+  G +D A  + R++   GC  D  +Y  ++ GLC   + 
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQ-GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRW 232

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            + +EL  EM    C+P +VT+ +LI  LC++   E    +  +M   G  P++  Y+++
Sbjct: 233 GDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATI 292

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA------------ 315
           +DG+CK G    A E+L  M S   +PN+V Y+T+L GLC   + +EA            
Sbjct: 293 IDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDC 352

Query: 316 -----------------------VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
                                  +E+L++M   G  PD   Y  +I+ FC  G   EA  
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
            L  M   G  PN +++++       V++GLC       A ++   M  +    + +T++
Sbjct: 413 LLKSMSSCGCKPNTVSYTI-------VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFN 465

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +LI   CKKG + ++  ++ +++++GC PD  ++S V+  L    K  +A ELL
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELL 519



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 160/316 (50%), Gaps = 7/316 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G + +   ++ ++  L SA +++ AE+LL  + ++ C   D+T +I +      G V R 
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR- 374

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              + + ++M   GC P   +Y TV+    +E  +  A    + M   G +P   S  ++
Sbjct: 375 --VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K LC     +DA  ++  +M  +GC P+  T+ TLIN LC+ G + +A EL K+M    
Sbjct: 433 LKGLCSAGRWVDAE-ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP +++Y+++I+GL ++   EEA+ L   M +KG+ PN   YSS+   L + G  ++ +
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI 551

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   +     R + V Y+ +++ LCK  +   A++    M   G  P+   Y  +I   
Sbjct: 552 QMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL 611

Query: 342 CDIGKYQEAANFLDEM 357
              G  +EA   L E+
Sbjct: 612 ASEGLAKEAQELLSEL 627



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 1/248 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G   D  T++ +I+          A  LL  ++   C      +  + +G     R +
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV 443

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +  +M + GC P P ++ T++  L ++  ++ A    + M   G  P + S + +I
Sbjct: 444 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 503

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K +G  + A ++   M N+G +P++  Y ++   L R G++ +  ++F  ++    
Sbjct: 504 DGLGK-AGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTI 562

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V Y ++I+ LC+    + A+  F  M S G  PN  TY+ L+ GL   G + +A E
Sbjct: 563 RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622

Query: 283 LLQMMISK 290
           LL  + S+
Sbjct: 623 LLSELCSR 630



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 112/244 (45%), Gaps = 17/244 (6%)

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV Y +++ G C++  +  A RL   +    V PN +T+  ++ GLC  G  + A+E+L 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M  K   P    Y  +L   C+ G  + +V +L+ M  +G   D G    +++  C+ G
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQG 195

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
              EA   L ++   G   + +++       N V++GLC     + +     + +  + V
Sbjct: 196 CVDEAVGLLRKLAFFGCEADIVSY-------NAVLKGLCMA---KRWGDVEELMDEMVRV 245

Query: 406 DS----LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           D     +T+++LI   C+ G   +   ++ ++   GC PD   ++ ++  +     +  A
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVA 305

Query: 462 AELL 465
            E+L
Sbjct: 306 NEIL 309


>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 484

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNXIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 166/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNXIFMRLISSHCKSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKXGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 220/423 (52%), Gaps = 12/423 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++++IS    + +   A  +LDR+N     +T +  L      G++ +   
Sbjct: 121 SGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQ--- 177

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V D+  +  C P   +Y  ++    +E+ +  A +    MR  G +P V + NVLI 
Sbjct: 178 AMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLIN 237

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +CK  G +D A K    MP+ GC P+  T+  ++  +C  G+  +A++L  +M  K CS
Sbjct: 238 GICK-EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCS 296

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P+VVT+  LIN LC+   +  A+ + E+M   G  PN  +Y+ L+ G CK     +A+E 
Sbjct: 297 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 356

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+S+   P+IVTY+TLL  LCK+GK+  AVEIL+++  +G  P    Y  +I     
Sbjct: 357 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 416

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           +GK + A   LDEM   G+ P+ +T+S       ++V GL +    + A + +  +    
Sbjct: 417 VGKTERAIKLLDEMRRKGLKPDIITYS-------SLVSGLSREGKVDEAIKFFHDLEGLG 469

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  +++TY+S++   CK     ++   +  ++   C P E T++ ++  +      ++A 
Sbjct: 470 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 529

Query: 463 ELL 465
           +LL
Sbjct: 530 DLL 532



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 206/396 (52%), Gaps = 15/396 (3%)

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           IT ++ +S   GY +     +A++V D+M      P   +Y T+L  L +  +LK A   
Sbjct: 128 ITYNVLIS---GYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEV 181

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
                +    P V +  +LI+A CK SG +  A K+  EM N+G  PD  TY  LING+C
Sbjct: 182 LDRQLQKECYPDVITYTILIEATCKESG-VGQAMKLLDEMRNKGSKPDVVTYNVLINGIC 240

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           + G++ EA +    M +  C P V+T+  ++  +C +    +A +L  +M  KG  P+V 
Sbjct: 241 KEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVV 300

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T++ L++ LC+ G   +A+++L+ M      PN ++Y+ LL+G CKE K+  A+E LD M
Sbjct: 301 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 360

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G  PD   Y  +++  C  GK   A   L+++   G +P  +T+       NTV+ G
Sbjct: 361 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITY-------NTVIDG 413

Query: 383 LCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           L K     RA ++   MR + +  D +TYSSL++   ++G + ++ +   +L   G  P+
Sbjct: 414 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 473

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
             T++++M  L   R+  +A + L   +  +C   E
Sbjct: 474 AITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 509



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 179/336 (53%), Gaps = 10/336 (2%)

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           LV   +L+  F+F   M   G  P +     LI+  C+   T  A + +   +   G  P
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATW-VMEILEQSGAVP 125

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY  LI+G C+ G+I  A ++   M     +P VVTY +++  LC S  +++AM + 
Sbjct: 126 DVITYNVLISGYCKSGEIDNALQVLDRMNV---APDVVTYNTILRTLCDSGKLKQAMEVL 182

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +    K   P+V TY+ L++  CK     QAM+LL  M +K  +P++VTY+ L+NG+CKE
Sbjct: 183 DRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 242

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+L EA++ L+ M   G +P+   +  I+   C  G++ +A   L +M+  G +P+ +T+
Sbjct: 243 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 302

Query: 370 SLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
             +I I+    QGL      RA  +   M     + +SL+Y+ L+  FCK+  + ++   
Sbjct: 303 --NILINFLCRQGLL----GRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 356

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +D +V  GC PD  T++ ++TAL    K+  A E+L
Sbjct: 357 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 392



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 168/313 (53%), Gaps = 12/313 (3%)

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           ++ L +N G ++  FK    M  RG  PD     +LI G CR+GK  +A  + + +E   
Sbjct: 64  LRRLVRN-GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSG 122

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P V+TY  LI+G C+S  ++ A+++ + M    V P+V TY++++  LC  G   QAM
Sbjct: 123 AVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAM 179

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           E+L   + K   P+++TY+ L+   CKE  + +A+++LD M+ +G KPD   Y  +I+  
Sbjct: 180 EVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI 239

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRN 400
           C  G+  EA  FL+ M   G  PN +T       HN +++ +C T      +  LS M  
Sbjct: 240 CKEGRLDEAIKFLNNMPSYGCQPNVIT-------HNIILRSMCSTGRWMDAEKLLSDMLR 292

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  S   +T++ LI   C++G + ++  I++++ + GC P+  +++ ++      +KM +
Sbjct: 293 KGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 352

Query: 461 AAELLLLELMNKC 473
           A E L + +   C
Sbjct: 353 AIEYLDIMVSRGC 365



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 175/353 (49%), Gaps = 10/353 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++    E  V +A+ + D    +   G + D  T++++I+ +    +   A   
Sbjct: 195 ITYTILIEATCKESGVGQAMKLLDEMRNK---GSKPDVVTYNVLINGICKEGRLDEAIKF 251

Query: 73  LDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           L+ +    C    IT +I L   R      R +DA ++   M   GC P+  ++  ++  
Sbjct: 252 LNNMPSYGCQPNVITHNIIL---RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINF 308

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L  +  L  A      M   G  P   S N L+   CK    MD A +    M +RGC P
Sbjct: 309 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEK-KMDRAIEYLDIMVSRGCYP 367

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY TL+  LC+ GK+  A E+  ++ +K CSP ++TY ++I+GL +    E A++L 
Sbjct: 368 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLL 427

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EMR KG++P++ TYSSL+ GL + G   +A++    +     RPN +TY++++ GLCK 
Sbjct: 428 DEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKS 487

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
            +   A++ L  M  +  KP    Y  +I      G  +EA + L+E+   G+
Sbjct: 488 RQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 220/423 (52%), Gaps = 12/423 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++++IS    + +   A  +LDR+N     +T +  L      G++ +   
Sbjct: 178 SGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQ--- 234

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V D+  +  C P   +Y  ++    +E+ +  A +    MR  G +P V + NVLI 
Sbjct: 235 AMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLIN 294

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +CK  G +D A K    MP+ GC P+  T+  ++  +C  G+  +A++L  +M  K CS
Sbjct: 295 GICK-EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCS 353

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P+VVT+  LIN LC+   +  A+ + E+M   G  PN  +Y+ L+ G CK     +A+E 
Sbjct: 354 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 413

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+S+   P+IVTY+TLL  LCK+GK+  AVEIL+++  +G  P    Y  +I     
Sbjct: 414 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 473

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           +GK + A   LDEM   G+ P+ +T+S       ++V GL +    + A + +  +    
Sbjct: 474 VGKTERAIKLLDEMRRKGLKPDIITYS-------SLVSGLSREGKVDEAIKFFHDLEGLG 526

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  +++TY+S++   CK     ++   +  ++   C P E T++ ++  +      ++A 
Sbjct: 527 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 586

Query: 463 ELL 465
           +LL
Sbjct: 587 DLL 589



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 206/396 (52%), Gaps = 15/396 (3%)

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           IT ++ +S   GY +     +A++V D+M      P   +Y T+L  L +  +LK A   
Sbjct: 185 ITYNVLIS---GYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEV 238

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
                +    P V +  +LI+A CK SG +  A K+  EM N+G  PD  TY  LING+C
Sbjct: 239 LDRQLQKECYPDVITYTILIEATCKESG-VGQAMKLLDEMRNKGSKPDVVTYNVLINGIC 297

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           + G++ EA +    M +  C P V+T+  ++  +C +    +A +L  +M  KG  P+V 
Sbjct: 298 KEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVV 357

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T++ L++ LC+ G   +A+++L+ M      PN ++Y+ LL+G CKE K+  A+E LD M
Sbjct: 358 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 417

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G  PD   Y  +++  C  GK   A   L+++   G +P  +T+       NTV+ G
Sbjct: 418 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITY-------NTVIDG 470

Query: 383 LCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           L K     RA ++   MR + +  D +TYSSL++   ++G + ++ +   +L   G  P+
Sbjct: 471 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 530

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
             T++++M  L   R+  +A + L   +  +C   E
Sbjct: 531 AITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 566



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 179/336 (53%), Gaps = 10/336 (2%)

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           LV   +L+  F+F   M   G  P +     LI+  C+   T  A + +   +   G  P
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATW-VMEILEQSGAVP 182

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY  LI+G C+ G+I  A ++   M     +P VVTY +++  LC S  +++AM + 
Sbjct: 183 DVITYNVLISGYCKSGEIDNALQVLDRMNV---APDVVTYNTILRTLCDSGKLKQAMEVL 239

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +    K   P+V TY+ L++  CK     QAM+LL  M +K  +P++VTY+ L+NG+CKE
Sbjct: 240 DRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 299

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+L EA++ L+ M   G +P+   +  I+   C  G++ +A   L +M+  G +P+ +T+
Sbjct: 300 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 359

Query: 370 SLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
             +I I+    QGL      RA  +   M     + +SL+Y+ L+  FCK+  + ++   
Sbjct: 360 --NILINFLCRQGLL----GRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 413

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +D +V  GC PD  T++ ++TAL    K+  A E+L
Sbjct: 414 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 449



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 168/313 (53%), Gaps = 12/313 (3%)

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           ++ L +N G ++  FK    M  RG  PD     +LI G CR+GK  +A  + + +E   
Sbjct: 121 LRRLVRN-GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSG 179

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P V+TY  LI+G C+S  ++ A+++ + M    V P+V TY++++  LC  G   QAM
Sbjct: 180 AVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAM 236

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           E+L   + K   P+++TY+ L+   CKE  + +A+++LD M+ +G KPD   Y  +I+  
Sbjct: 237 EVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI 296

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRN 400
           C  G+  EA  FL+ M   G  PN +T       HN +++ +C T      +  LS M  
Sbjct: 297 CKEGRLDEAIKFLNNMPSYGCQPNVIT-------HNIILRSMCSTGRWMDAEKLLSDMLR 349

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  S   +T++ LI   C++G + ++  I++++ + GC P+  +++ ++      +KM +
Sbjct: 350 KGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 409

Query: 461 AAELLLLELMNKC 473
           A E L + +   C
Sbjct: 410 AIEYLDIMVSRGC 422



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 175/353 (49%), Gaps = 10/353 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++    E  V +A+ + D    +   G + D  T++++I+ +    +   A   
Sbjct: 252 ITYTILIEATCKESGVGQAMKLLDEMRNK---GSKPDVVTYNVLINGICKEGRLDEAIKF 308

Query: 73  LDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           L+ +    C    IT +I L   R      R +DA ++   M   GC P+  ++  ++  
Sbjct: 309 LNNMPSYGCQPNVITHNIIL---RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINF 365

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L  +  L  A      M   G  P   S N L+   CK    MD A +    M +RGC P
Sbjct: 366 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEK-KMDRAIEYLDIMVSRGCYP 424

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY TL+  LC+ GK+  A E+  ++ +K CSP ++TY ++I+GL +    E A++L 
Sbjct: 425 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLL 484

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EMR KG++P++ TYSSL+ GL + G   +A++    +     RPN +TY++++ GLCK 
Sbjct: 485 DEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKS 544

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
            +   A++ L  M  +  KP    Y  +I      G  +EA + L+E+   G+
Sbjct: 545 RQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597


>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 476

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/469 (28%), Positives = 231/469 (49%), Gaps = 50/469 (10%)

Query: 33  VIFDSATAEYA----------NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82
           V+  S T+E+A          N F H+  T   +I  L  A++   A  +L  + K+  +
Sbjct: 10  VLHSSKTSEHAFHFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLE 69

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
             ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  +  R+
Sbjct: 70  WDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMGKRY 129

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+ING  
Sbjct: 130 FNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETAIRFFEDMKSREISPDVVTYNTMINGYY 188

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G +PN  
Sbjct: 189 RVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGTKPNAI 248

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAVEILDR 321
           TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A ++L  
Sbjct: 249 TYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKA 308

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--IHNTV 379
           M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+    HN +
Sbjct: 309 MIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIML-RPQSTLHLEPSAHNPM 367

Query: 380 VQGLCKT-----------------------------------DPNRAFQVYLSMRNRSIS 404
           ++ LC                                      P+ AF++   M  R + 
Sbjct: 368 IEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIMLRRKVD 427

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 428 SEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 476



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           AF F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 20  AFHFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 79

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +        R F +M S+G+E
Sbjct: 80  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMGKRYFNKMLSEGIE 139

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A+   + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 140 PTRHTFNVMIWGFFLSGKVETAIRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 199

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   G  PN +T+S       T
Sbjct: 200 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGTKPNAITYS-------T 252

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 253 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 312

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 313 SVPTEAGHYGLLIENFCKAGQYDKAVKLL-----DKLIEKDIMLRPQ 354


>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 481

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 231/470 (49%), Gaps = 42/470 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSAKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++FD+M+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKQGIVQESVKLFDRMEELGVERTIKSYDALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NVLI      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVLIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L+   CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSILKEMMDKYLAPTDNSIFMRLITSQCKSGHLDAAS 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKVIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            R +  +   Y SL+  + KK +   +   +D ++ +  LPD   + +VM
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENDHLPDSALFRSVM 480



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 162/347 (46%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ +LF  ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKQGIVQESVKLFDRMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ L+ G    G    A    + M S+   P++VTY+T++NG  +  K+ EA + 
Sbjct: 148 PTRHTFNVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMXEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +  + A  +   M ++ ++  D+  +  LIT  CK G +  ++ ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARSILKEMMDKYLAPTDNSIFMRLITSQCKSGHLDAASDVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  QA +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDQAVKLL-----DKVIEKDIILRPQ 362


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 239/475 (50%), Gaps = 48/475 (10%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC------ 81
           +++AL IFD A      GF  D  T++ +I+    A++   A+ +L R+  E        
Sbjct: 136 LDEALKIFDGAVKR---GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVT 192

Query: 82  ------------DITEDIFLSICRGYG--------------RVHRPLDAMR-VFDKMKEF 114
                        + E   L + +G+               R  R L++ R + +KM   
Sbjct: 193 YNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLN 252

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           GC+P   SY  ++  L  E  +  A + +  +   G +P V + N+LI  L K    ++ 
Sbjct: 253 GCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKED-RVNE 311

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           AF++F  +   G  PD+ TY   I+GLC+ G++ +A  + K+M+ K C P VV++ ++IN
Sbjct: 312 AFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVIN 371

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           GLC+ K V+EA  L   M +KG  PN  ++++L+ G C+ G   +AM   + M+ +  +P
Sbjct: 372 GLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKP 431

Query: 295 NIVTYSTLLNGLCK---EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +VTY+ L++GLCK   EG+++EA+ + D M  +G  PD   Y  +I      GK  +A 
Sbjct: 432 TVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDAR 491

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             L  M   G  PN  T+       N+++ GLC  D  + A +++++M  +    D++TY
Sbjct: 492 RLLGAMEAKGCIPNVYTY-------NSLISGLCGLDKVDEALELFVAMVEKGCVPDTITY 544

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++I+  CK+  + K+  + D  +  G +P  G + +++  L    ++ +A +LL
Sbjct: 545 GTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 234/450 (52%), Gaps = 20/450 (4%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           L RA + +  A  +FD       +GF  +  T++ ++S L +  +   A+ L +R+ K  
Sbjct: 60  LCRASR-IGDAQTVFDGMRK---HGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAG 115

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
                  + ++  G+ +V +  +A+++FD   + G  P   +Y  ++    + ++L  A 
Sbjct: 116 YSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQ 175

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           R  + M    + P V + N L+  LCKN G +D A  +   + ++G +P+  TY TLI+G
Sbjct: 176 RILQRMVSESLVPDVVTYNSLVNGLCKN-GRVDEARML---IVDKGFSPNVITYSTLISG 231

Query: 201 LCR-LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           LCR L ++  A++L ++M    C P +V+Y +LI+GL + + V EA++LF  +  +G EP
Sbjct: 232 LCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEP 291

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
            V TY+ L+DGL K    ++A EL   ++     P+ +TY+  ++GLCK G++++A+ +L
Sbjct: 292 EVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLML 351

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
             M  +G  PD   +  +I+  C   +  EA   L  M   G +PN +++       NT+
Sbjct: 352 KDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISF-------NTL 404

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK---KGDIHKSARIVDELVL 435
           + G C+     +A   +  M  R +    +TY+ L+   CK   +G I ++  + D ++ 
Sbjct: 405 ICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIE 464

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G +PD  T+SA++  L    K+  A  LL
Sbjct: 465 KGRVPDVVTYSALIDGLGKAGKLDDARRLL 494



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 100/296 (33%), Positives = 167/296 (56%), Gaps = 12/296 (4%)

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           +PD+YT G L+  L + GKI +A    +++  K     + T+   I+GLC++  + +A  
Sbjct: 13  SPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQT 71

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +F+ MR  G  PN  TY++L+ GLC GG  S A  L + MI   + P++VTY+TLL+G C
Sbjct: 72  VFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K GKL EA++I D    +G  PD   Y  +I+ FC   K  EA   L  MV   + P+ +
Sbjct: 132 KVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVV 191

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           T+       N++V GLCK    R  +  + + ++  S + +TYS+LI+  C++    +SA
Sbjct: 192 TY-------NSLVNGLCKN--GRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESA 242

Query: 428 R-IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           R +++++VL+GC PD  +++A++  L   + + +A + L   ++ +  E EV   N
Sbjct: 243 RQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALK-LFGSVLRQGYEPEVPTYN 297



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 176/337 (52%), Gaps = 15/337 (4%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-- 82
           E+ V++AL +F S   +   G+  +  T++++I  L+  ++   A +L   + K   +  
Sbjct: 271 EQGVSEALKLFGSVLRQ---GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPD 327

Query: 83  -ITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
            IT  +F+  +C+  GRV    DA+ +   M E GC P   S+  V+  L +E ++  A 
Sbjct: 328 AITYTVFIDGLCKA-GRVE---DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAE 383

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
                M   G  P   S N LI   C+ +G    A   F+EM  RG  P   TY  L++G
Sbjct: 384 VLLSGMEAKGCSPNAISFNTLICGQCR-AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDG 442

Query: 201 LCRL---GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           LC+    G+I EA  LF  M  K   P VVTY++LI+GL ++  +++A RL   M +KG 
Sbjct: 443 LCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGC 502

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PNV+TY+SL+ GLC      +A+EL   M+ K   P+ +TY T+++ LCK+  + +A+ 
Sbjct: 503 IPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALA 562

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           + D     G+ P +G+Y  +I   C + +  EA   L
Sbjct: 563 LFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 163/316 (51%), Gaps = 14/316 (4%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
            P   ++ +L+++L K SG ++ A +   ++  +G   D  T+   I+GLCR  +I +A+
Sbjct: 13  SPDAYTVGILLRSLLK-SGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQ 70

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
            +F  M      P  +TY +L++GLC    + +A  L+E M   G  P+V TY++L+ G 
Sbjct: 71  TVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGF 130

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
           CK G   +A+++    + +   P++VTY+ L+NG CK  KL EA  IL RM  + L PD 
Sbjct: 131 CKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDV 190

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT--DPN 389
             Y  +++  C  G+  EA   +   V  G +PN +T+S       T++ GLC+      
Sbjct: 191 VTYNSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYS-------TLISGLCRELRRLE 240

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A Q+   M       D ++Y++LI    ++  + ++ ++   ++  G  P+  T++ ++
Sbjct: 241 SARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILI 300

Query: 450 TALWDRRKMRQAAELL 465
             L    ++ +A EL 
Sbjct: 301 DGLLKEDRVNEAFELF 316



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 4/240 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  + + +I+ L    +   AE LL  +  + C      F ++  G  R  +   AM  F
Sbjct: 362 DVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTF 421

Query: 109 DKMKEFGCEPTPKSYITVLAILV---EENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            +M + G +PT  +Y  ++  L    +E ++K A   +  M E G  P V + + LI  L
Sbjct: 422 KEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGL 481

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            K +G +D A ++   M  +GC P+ YTY +LI+GLC L K+ EA ELF  M  K C P 
Sbjct: 482 GK-AGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPD 540

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
            +TY ++I+ LC+ + V++A+ LF+     GV P    Y SL+DGLC      +A++LLQ
Sbjct: 541 TITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           + P+  T   LL  L K GK+++A   ++++ ++GL  D   +   IS  C   +  +A 
Sbjct: 12  YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISGLCRASRIGDAQ 70

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
              D M   G  PNR+T+       N ++ GLC     + A  +Y  M     S D +TY
Sbjct: 71  TVFDGMRKHGFWPNRITY-------NALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTY 123

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++L+  FCK G + ++ +I D  V  G +PD  T++A++       K+ +A  +L
Sbjct: 124 NTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRIL 178


>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
 gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
          Length = 475

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 203/375 (54%), Gaps = 11/375 (2%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           + ++V +LI ++ D   A  IFD A+ +    F+H  S++ ++I KL  A  F   +DLL
Sbjct: 66  SPSRVQKLIASQSDPLLAKEIFDYASRQ--PNFQHSYSSYLILILKLGRAKYFSFIDDLL 123

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV-E 132
             +  +   +T  +F  I   YG  + P  A+++F  + +F C P+PK    +L ILV  
Sbjct: 124 TDLKSKNYPVTPTLFSYIINIYGEANLPDKALKIFYTILKFDCNPSPKHLNGILEILVSH 183

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +N +K AF  ++      + P   S N+LI+A C N G +  A+ +F +M  R   PD  
Sbjct: 184 QNYIKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLN-GQISMAYSLFNQMFKRDVMPDVE 242

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +Y  L+  LCR  ++  A +L ++M  K   P  ++YT+L+N LC+ K + EA +L   M
Sbjct: 243 SYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRM 302

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           + KG  P++  Y++++ G C+ G +  A ++L+ M S    PN+V+Y TL+ GLC +G  
Sbjct: 303 KVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMF 362

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA   L+ M ++G  P   +   +I  FC++GK +EA   ++E++  G  P+  TW + 
Sbjct: 363 DEAKSHLEEMMMKGFSPHFAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTETWVM- 421

Query: 373 IRIHNTVVQGLCKTD 387
                 +V  +C+ D
Sbjct: 422 ------MVSRICEVD 430



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 139/296 (46%), Gaps = 18/296 (6%)

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +Y  LI  L R        +L  ++++K    T   ++ +IN   ++   ++A+++F  +
Sbjct: 102 SYLILILKLGRAKYFSFIDDLLTDLKSKNYPVTPTLFSYIINIYGEANLPDKALKIFYTI 161

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQ-----AMELLQMMISKRHRPNIVTYSTLLNGLC 307
                 P+       ++G+ +   S Q     A +L +   +    PN  +Y+ L+   C
Sbjct: 162 LKFDCNPS----PKHLNGILEILVSHQNYIKPAFDLFKDAHTYDVFPNTKSYNILIRAFC 217

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
             G++  A  + ++M  + + PD   Y  ++   C   +   A + L++M+  G  P+ L
Sbjct: 218 LNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDAL 277

Query: 368 TWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           +++       T++  LC+    R A+++   M+ +  + D + Y+++I  FC++G    +
Sbjct: 278 SYT-------TLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDA 330

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            ++++++  +GC+P+  ++  ++  L D + M   A+  L E+M K       + N
Sbjct: 331 CKVLEDMESNGCMPNLVSYRTLVGGLCD-QGMFDEAKSHLEEMMMKGFSPHFAVSN 385


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 212/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H+  + +++I+ L   N    A  +L ++ K         F ++  G        +A
Sbjct: 122 GVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEA 181

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F++M   G +P   SY TV+  L +     +A +  R M E G +P + +   +I +
Sbjct: 182 VGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDS 241

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK++   DA   +  EM +RG  PD  TY T+++G C LG + EA  LF EM  +   P
Sbjct: 242 LCKDTLVNDA-MDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMP 300

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT+T L++GLC+   V EA  +FE M  KG EPN +TY++LMDG C      +A ++L
Sbjct: 301 NTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVL 360

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M+ K   P + +Y+ L+NG CK  +L EA  +L  M  + L PD   Y  ++   C +
Sbjct: 361 DIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQV 420

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+ QEA N   EM   G+ P+ +T+S       T++ GLCK    + A ++  SM+   I
Sbjct: 421 GRPQEALNLFKEMCSSGLLPDLMTYS-------TLLDGLCKHGHLDEALKLLKSMQESKI 473

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D + Y+ LI      G +  +  +  +L  DG  P   T++ ++  L       +A E
Sbjct: 474 EPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYE 533

Query: 464 LL 465
           L 
Sbjct: 534 LF 535



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 190/398 (47%), Gaps = 42/398 (10%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F +M      P+   +   L  + ++ Q          M   G+   V SLN+LI
Sbjct: 75  DALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILI 134

Query: 163 KALCKNS----------------------------------GTMDAAFKIFREMPNRGCT 188
             LC+ +                                  G +  A  +F EM  RG  
Sbjct: 135 NCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQ 194

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD  +Y T+INGLC+ G    A +L ++ME K C P +V YT++I+ LC+   V +AM L
Sbjct: 195 PDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDL 254

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             EM  +G+ P+V TYS+++ G C  G  ++A  L   M+ +   PN VT++ L++GLCK
Sbjct: 255 LSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCK 314

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EG + EA  + + M  +G +P+A  Y  ++  +C   +  EA   LD MV  G  P    
Sbjct: 315 EGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAP---- 370

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
               +  +N ++ G CK    + A  + + M  + ++ D++TYS+L+   C+ G   ++ 
Sbjct: 371 ---VVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEAL 427

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  E+   G LPD  T+S ++  L     + +A +LL
Sbjct: 428 NLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLL 465



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 218/448 (48%), Gaps = 15/448 (3%)

Query: 6   MFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           MFK   +  +     LI     E ++ +A+ +F+        G + D  ++S +I+ L  
Sbjct: 153 MFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRR---GHQPDVISYSTVINGLCK 209

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
           +     A  LL ++ ++ C      + +I     +     DAM +  +M + G  P   +
Sbjct: 210 SGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVT 269

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y T+L        L  A   +  M    + P   +  +L+  LCK  G +  A  +F  M
Sbjct: 270 YSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCK-EGMVSEARCVFEAM 328

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             +G  P++YTY  L++G C   ++ EA+++   M  K C+P V +Y  LING C+ + +
Sbjct: 329 TKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRL 388

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           +EA  L  EM  K + P+  TYS+LM GLC+ G   +A+ L + M S    P+++TYSTL
Sbjct: 389 DEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTL 448

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           L+GLCK G L EA+++L  M+   ++PD  LY  +I      GK + A     ++   GI
Sbjct: 449 LDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGI 508

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P        IR +  +++GL K    + A++++  M +     +S +Y+ +I  F +  
Sbjct: 509 QPT-------IRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQ 561

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVM 449
           D   + R++DE+V      D  T+  ++
Sbjct: 562 DSSTAIRLIDEMVGKRFSADSSTFQMLL 589



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 154/302 (50%), Gaps = 8/302 (2%)

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L  NS ++D A   F  M      P    +G  +  + +  +      L  +M+    + 
Sbjct: 66  LSNNSISIDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTH 125

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V +   LIN LC+   V  A+ +  +M   G++P+  T+++L++G C  G   +A+ L 
Sbjct: 126 NVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLF 185

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+ + H+P++++YST++NGLCK G    A+++L +M+ +G KP+   Y  II   C  
Sbjct: 186 NEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKD 245

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
               +A + L EMV  GI P+ +T+S       T++ G C     N A  ++  M  R++
Sbjct: 246 TLVNDAMDLLSEMVDRGIPPDVVTYS-------TILHGFCSLGHLNEATILFNEMVGRNV 298

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +++T++ L+   CK+G + ++  + + +   G  P+  T++A+M       +M +A +
Sbjct: 299 MPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQK 358

Query: 464 LL 465
           +L
Sbjct: 359 VL 360



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 135/280 (48%), Gaps = 4/280 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  V++A  +F++ T +   G   +  T++ ++      NQ   A+ +LD +  + C   
Sbjct: 315 EGMVSEARCVFEAMTKK---GAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPV 371

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              +  +  GY +  R  +A  +  +M E    P   +Y T++  L +  + + A   ++
Sbjct: 372 VHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFK 431

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   G+ P + + + L+  LCK+ G +D A K+ + M      PD   Y  LI G+   
Sbjct: 432 EMCSSGLLPDLMTYSTLLDGLCKH-GHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIA 490

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           GK+  AKELF ++      PT+ TYT +I GL +    +EA  LF +M   G  PN  +Y
Sbjct: 491 GKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSY 550

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           + ++ G  +   SS A+ L+  M+ KR   +  T+  LL+
Sbjct: 551 NVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 227/438 (51%), Gaps = 13/438 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D   ++ M++    A Q   A         E+   T D  +    G GR     +A+ V 
Sbjct: 127 DVMAYNAMMAGYCGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTA---NALAVL 183

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M    C P   +Y  +L    + +  K A +    MR+ G  P + + NV++  +C+ 
Sbjct: 184 DEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQE 243

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D A +  + +P+ GC P++ +Y  ++ GLC   +  +A+EL  EM  K C P VVT
Sbjct: 244 -GRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVT 302

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  LI+ LC+   VE A+ + E++   G  PN  +Y+ L+   CK     +AM  L +M+
Sbjct: 303 FNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMV 362

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+   P+IV+Y+TLL  LC+ G++  AVE+L ++K +G  P    Y  +I      GK +
Sbjct: 363 SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTK 422

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           EA   L+EMV  G+ P+ +T+S       T+  GLC+ D    A + +  +++  I  ++
Sbjct: 423 EALELLNEMVSKGLQPDIITYS-------TIAAGLCREDRIEDAIRAFGKVQDMGIRPNT 475

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           + Y+++I   CK+ + H +  +   ++ +GC+P+E T++ ++  L     +++A + LL 
Sbjct: 476 VLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARD-LLD 534

Query: 468 ELMNKCVEAEVDIQNQDV 485
           EL ++  E  +D+   DV
Sbjct: 535 ELCSRGEEILLDVHLIDV 552



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 173/327 (52%), Gaps = 13/327 (3%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V + N ++   C  +G +DAA +   E   R    D+YT  TLI GLC  G+   A  
Sbjct: 126 PDVMAYNAMMAGYC-GAGQVDAARRWCAE---RAVERDAYTCDTLIRGLCGRGRTANALA 181

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +  EM  + C P VVTYT L+   C+    ++AM+L +EMR KG  P++ TY+ +++G+C
Sbjct: 182 VLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC 241

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           + G    A+E L+ + S    PN V+Y+ +L GLC   + ++A E++  M  +G  P+  
Sbjct: 242 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVV 301

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF 392
            +  +IS  C  G  + A   L+++   G +PN L++       N ++   CK       
Sbjct: 302 TFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSY-------NPLLHAFCKQKKMDKA 354

Query: 393 QVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             +L  M +R    D ++Y++L+T  C+ G++  +  ++ +L   GC P   +++ V+  
Sbjct: 355 MAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDG 414

Query: 452 LWDRRKMRQAAELLLLELMNKCVEAEV 478
           L    K ++A E LL E+++K ++ ++
Sbjct: 415 LTKAGKTKEALE-LLNEMVSKGLQPDI 440



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 148/286 (51%), Gaps = 16/286 (5%)

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD+ T   LI  L   G+  EA+ +       AC P V+ Y +++ G C +  V+ A R 
Sbjct: 96  PDAGTCAALIKKLSASGRTAEARRVLA-----ACGPDVMAYNAMMAGYCGAGQVDAARRW 150

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             E   + VE + +T  +L+ GLC  G ++ A+ +L  M+ +R  P++VTY+ LL   CK
Sbjct: 151 CAE---RAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCK 207

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
               ++A+++LD M+ +G  PD   Y  +++  C  G+  +A  FL  +   G  PN ++
Sbjct: 208 RSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVS 267

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       N V++GLC  +    A ++   M  +    + +T++ LI+  C+KG +  + 
Sbjct: 268 Y-------NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPAL 320

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            +++++   GC P+  +++ ++ A   ++KM +A   L L +   C
Sbjct: 321 EVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC 366



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 99/197 (50%), Gaps = 4/197 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K ++KA+   D   +    G   D  +++ +++ L  + +   A +LL ++  + C   
Sbjct: 348 QKKMDKAMAFLDLMVSR---GCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 404

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  +  +A+ + ++M   G +P   +Y T+ A L  E++++ A R + 
Sbjct: 405 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG 464

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            ++++GI+P     N +I  LCK   T  +A  +F  M   GC P+  TY  LI GL   
Sbjct: 465 KVQDMGIRPNTVLYNAIILGLCKRRET-HSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 523

Query: 205 GKIYEAKELFKEMETKA 221
           G I EA++L  E+ ++ 
Sbjct: 524 GLIKEARDLLDELCSRG 540


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 229/451 (50%), Gaps = 35/451 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD- 103
           G + +   ++ +I+ L      R AE ++++V K         + S+  GY R +R LD 
Sbjct: 223 GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCR-NRDLDS 281

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F++M E GCEP   +Y T++  L    ++  A  F   M   G+ P V +    I 
Sbjct: 282 AFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIV 341

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           ALC + G ++ A+KIF +M  +GC P+ YTY +LI+G  R+ ++  A  LF  M      
Sbjct: 342 ALC-DMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQ-RVSRM--AIGLFHRMSRDGVV 397

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY +L+N L ++  ++ A+ +F  M   G  PN  +Y+ L+ G C  G + +AM +
Sbjct: 398 PNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSM 457

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M+  R  P +VTY+ ++ G C  G    A+ +L+ MK  G +PD   Y ++IS FC 
Sbjct: 458 LTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCK 517

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRI 375
           I K + A+   +EM+  G+ PN +T++                             +++ 
Sbjct: 518 ISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQT 577

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +N ++ GL K +  + A ++   M    IS D +TYS++I   C  G I  +  + +++V
Sbjct: 578 YNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMV 637

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             GCLP+  T+S+++ AL    ++ +A E+ 
Sbjct: 638 KHGCLPNLHTYSSLIQALGQEGRVEEAEEMF 668



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 216/446 (48%), Gaps = 22/446 (4%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           K+  K  T   ++ +L   R  +D++ A  IF+    E   G   + +T+S +I+ L ++
Sbjct: 256 KSGMKPDTFTYTSMILGYCR-NRDLDSAFEIFNRMDEE---GCEPNAATYSTLINGLCNS 311

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
            +   A D +  + +     T   F +       + R  DA ++F  MK+ GC+P   +Y
Sbjct: 312 GRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTY 371

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
            ++++    +   ++A   +  M   G+ P   + N L+  L +N   +D+A  +F  M 
Sbjct: 372 TSLIS---GQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENM-EIDSALIVFNMMG 427

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             GC P++ +Y  LI G C +G   +A  +   M     +PT+VTY  +I G C S   +
Sbjct: 428 KHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTD 487

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
            A+R+ E M++ G +P+ ++Y+ L+ G CK      A  +   M+ +   PN VTY+ L+
Sbjct: 488 VAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALI 547

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +G CK+ KL  A  +L+RMK  G +P+   Y  +I        +  A      M+   I+
Sbjct: 548 SGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKIS 607

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL----TYSSLITCFCK 419
           P+ +T+S       TV+ GLC    N A  + L M N+ +    L    TYSSLI    +
Sbjct: 608 PDVVTYS-------TVINGLCN---NGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQ 657

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTW 445
           +G + ++  +  EL   G +PDE T+
Sbjct: 658 EGRVEEAEEMFSELKKQGLIPDEVTY 683



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 190/381 (49%), Gaps = 50/381 (13%)

Query: 124 ITVLAILVEENQLKLAF----RFYRHMREIGIQPCVASLNVLIKALCKNSGT-------- 171
            T   +L++ N+L +      R+++ +RE G+QP +   N +I ALCK+           
Sbjct: 194 FTYTTLLIQLNKLNMTSTVMDRYHQILRE-GLQPNLLIYNSVINALCKDGNVRDAESIIN 252

Query: 172 --------------------------MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
                                     +D+AF+IF  M   GC P++ TY TLINGLC  G
Sbjct: 253 KVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSG 312

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ EA +   EM      PTV T+T+ I  LC    +E+A ++F +M+ KG +PNV+TY+
Sbjct: 313 RVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYT 372

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           SL+ G      S  A+ L   M      PN VTY+ L+N L +  ++  A+ + + M   
Sbjct: 373 SLISG---QRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKH 429

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G  P+   Y ++I  +C IG  ++A + L  M+ G  TP  +T+       N +++G C 
Sbjct: 430 GCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTY-------NIIIKGYCD 482

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           + D + A +V   M+      D  +Y+ LI+ FCK   +  ++ + +E++  G  P+E T
Sbjct: 483 SGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVT 542

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           ++A+++      K+  AA +L
Sbjct: 543 YTALISGYCKDEKLDCAARML 563



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 163/322 (50%), Gaps = 7/322 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ VF+ M + GC P   SY  ++         + A     +M +    P + + N++IK
Sbjct: 419 ALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIK 478

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C +SG  D A ++   M   GC PD ++Y  LI+G C++ K+  A  +F EM  +   
Sbjct: 479 GYC-DSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLC 537

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTYT+LI+G C+ + ++ A R+ E M+  G  PNV TY+ L+ GL K    S A EL
Sbjct: 538 PNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 597

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            ++M+ ++  P++VTYST++NGLC  G +  A+E+ ++M   G  P+   Y  +I     
Sbjct: 598 CKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQ 657

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
            G+ +EA     E+   G+ P+ +T+   I +   V+ G  K D  RAF     M N   
Sbjct: 658 EGRVEEAEEMFSELKKQGLIPDEVTYVKMIEV--CVMSG--KVD--RAFDFLGEMINAGC 711

Query: 404 SVDSLTYSSLITCFCKKGDIHK 425
                TY  LI     +   HK
Sbjct: 712 QPTLQTYDVLIKGLQNEMVYHK 733



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 140/289 (48%), Gaps = 10/289 (3%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +IK+ C N   M  A         RG     +TY TL+  L +L       + + ++  +
Sbjct: 164 MIKS-CSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILRE 222

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P ++ Y S+IN LC+  +V +A  +  ++   G++P+ FTY+S++ G C+      A
Sbjct: 223 GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSA 282

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            E+   M  +   PN  TYSTL+NGLC  G++ EA++ +  M   G+ P    +   I  
Sbjct: 283 FEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVA 342

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN 400
            CD+G+ ++A     +M   G  PN  T++       +++ G  +     A  ++  M  
Sbjct: 343 LCDMGRIEDAWKIFIDMKKKGCKPNVYTYT-------SLISG--QRVSRMAIGLFHRMSR 393

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
             +  +++TY++L+    +  +I  +  + + +   GCLP+  +++ ++
Sbjct: 394 DGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELI 442



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 160/388 (41%), Gaps = 58/388 (14%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ANG + D  +++ +IS     ++   A  + + +        E  + ++  GY +  +  
Sbjct: 498 ANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLD 557

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A R+ ++MK  GC P  ++Y  ++  L ++N    A    + M E  I P V + + +I
Sbjct: 558 CAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVI 617

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA- 221
             LC N+G +  A ++F +M   GC P+ +TY +LI  L + G++ EA+E+F E++ +  
Sbjct: 618 NGLC-NNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGL 676

Query: 222 ----------------------------------CSPTVVTYTSLINGLCQSKSVEEAMR 247
                                             C PT+ TY  LI GL       + + 
Sbjct: 677 IPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVA 736

Query: 248 LFEEMRSKGVEPNVFT----------------------YSSLMDGLCKGGCSSQAMELLQ 285
           L     +   +  +                        Y +L+  L + G   +A  L +
Sbjct: 737 LPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYR 796

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+S+   PN  TY   L  L +  K+  A+++   M  Q  +     Y ++I   C + 
Sbjct: 797 SMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLH 856

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHI 373
           + +EA    ++M+   +  + + W++ I
Sbjct: 857 RRKEARFVFEKMLSRALNADEIVWTILI 884



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 108/217 (49%), Gaps = 9/217 (4%)

Query: 237 CQSKS-VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           C +K+ + +A+   +    +G +  +FTY++L+  L K   +S  M+    ++ +  +PN
Sbjct: 168 CSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPN 227

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           ++ Y++++N LCK+G +++A  I++++   G+KPD   Y  +I  +C       A    +
Sbjct: 228 LLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFN 287

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLI 414
            M   G  PN  T+S       T++ GLC +   N A      M    +     T+++ I
Sbjct: 288 RMDEEGCEPNAATYS-------TLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPI 340

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
              C  G I  + +I  ++   GC P+  T++++++ 
Sbjct: 341 VALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG 377



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 34/356 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHR 100
           +G R +  T++++I  L   N F  AE+L   + +EK       + ++  G    G +  
Sbjct: 569 SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAI-- 626

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           PL A+ +F+KM + GC P   +Y +++  L +E +++ A   +  +++ G+ P   +   
Sbjct: 627 PL-ALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVK 685

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I+ +C  SG +D AF    EM N GC P   TY  LI GL      ++   L     T 
Sbjct: 686 MIE-VCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTS 744

Query: 221 ACSPTVVT----------------------YTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
                ++                       Y +L++ L +S    EA  L+  M S+   
Sbjct: 745 TFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQC 804

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PN  TY   +  L +      AM++ + M  +R   ++  Y  L+  LC+  + +EA  +
Sbjct: 805 PNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFV 864

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
            ++M  + L  D  ++  +I+     G       FL  M       NR   S H R
Sbjct: 865 FEKMLSRALNADEIVWTILINGLLGAGYKDLCMEFLHIM-----ETNRRNPSSHAR 915



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 119/284 (41%), Gaps = 21/284 (7%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T + ++Q +  E  V +A  +F     +   G   D  T+  MI   V + +   A D L
Sbjct: 647 TYSSLIQALGQEGRVEEAEEMFSELKKQ---GLIPDEVTYVKMIEVCVMSGKVDRAFDFL 703

Query: 74  DRVNKEKCDITEDIFLSICRGYGR--VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
             +    C  T   +  + +G     V+  L A+        F  +   K  I+VL+  +
Sbjct: 704 GEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKL 763

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
            E   +L+ + Y               + L+  L + SG    A  ++R M ++   P+ 
Sbjct: 764 AELDFELSRQLY---------------DALLSRLSR-SGRWFEANNLYRSMVSQSQCPNQ 807

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY   +  L R  K+  A ++FK M  + C   +  Y  LI  LCQ    +EA  +FE+
Sbjct: 808 DTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEK 867

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           M S+ +  +   ++ L++GL   G     ME L +M + R  P+
Sbjct: 868 MLSRALNADEIVWTILINGLLGAGYKDLCMEFLHIMETNRRNPS 911


>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 484

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/469 (28%), Positives = 233/469 (49%), Gaps = 50/469 (10%)

Query: 33  VIFDSATAEYA----------NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82
           V+  S T+E+A          N F H+  T   +I  L  A++   A  +L  + K+  +
Sbjct: 18  VLHSSNTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLE 77

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
             ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  +A R+
Sbjct: 78  WDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRY 137

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+ING  
Sbjct: 138 FNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTMINGYY 196

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G++PN  
Sbjct: 197 RVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPNAI 256

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAVEILDR 321
           TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A ++L  
Sbjct: 257 TYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKA 316

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--IHNTV 379
           M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+    +N +
Sbjct: 317 MIRLSVPTEAGHYGLLIEKFCKAGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPNAYNPM 375

Query: 380 VQGLCKT-----------------------------------DPNRAFQVYLSMRNRSIS 404
           ++ LC                                      P+ AF++   M  R + 
Sbjct: 376 IEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIMLRRKVD 435

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 436 SEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 171/360 (47%), Gaps = 14/360 (3%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           V  +L   N  + A +F+R +    +       ++ I  +   +  ++ A  I  +MP +
Sbjct: 15  VYNVLHSSNTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKK 74

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G   D   +  +I+   + G + E+ ++F++ME      T+ +Y +L   + +      A
Sbjct: 75  GLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMA 134

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            R F +M S+G+EP   T++ ++ G    G    A    + M S+   P++VTY+T++NG
Sbjct: 135 KRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMING 194

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
             +  K++EA +    MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN
Sbjct: 195 YYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPN 254

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDI 423
            +T+S       T++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++
Sbjct: 255 AITYS-------TLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNL 307

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
             +A ++  ++      + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 308 DAAADVLKAMIRLSVPTEAGHYGLLIEKFCKAGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 484

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 235/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGILIENFCKAGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNLMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 166/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGILIENFCKAGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 484

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 235/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G    A 
Sbjct: 252 KPNTITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNPDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC +G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGXLIXNFCKVGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNTITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G+   +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNPDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGXLIXNFCKVGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 223/455 (49%), Gaps = 56/455 (12%)

Query: 56  MISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           +I  L  A +F  A      V   KC    IT +I +      GRV    +A ++F+ M 
Sbjct: 71  VIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE---EAFQIFESMH 127

Query: 113 EFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
               C P   +Y TV+  L ++ +L  A      M E G  P V + +VL++ LCK +G 
Sbjct: 128 TSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK-AGR 186

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D  F + +EM  RG  PD   Y TL+NGLC+  ++ EA EL + M    C PTVVTY S
Sbjct: 187 TDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNS 246

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+   C+SK V+ A RL + M  +G  P+V  Y++++ GLC+      A  LL+ M++ R
Sbjct: 247 LMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAAR 306

Query: 292 HRPNIVTYSTLLNGLCKEG------KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
             P+++TYST+++GLCK+       KL+ A EIL+ MK  G  P+AG Y  +I   C   
Sbjct: 307 CVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRAR 366

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404
           K Q+A   L  M+   + P+  ++S+       V+  LCK+ D + A++++  M  R   
Sbjct: 367 KSQQALALLRRMIDSEVVPDLSSFSM-------VIGSLCKSHDLDAAYKIFGMMSERECK 419

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELV-------------LDG-------------- 437
            + + Y++LI    K G++ K+ R+ + +V             LDG              
Sbjct: 420 PNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMV 479

Query: 438 -------CLPDEGTWSAVMTALWDRRKMRQAAELL 465
                  C PD  ++ A++  L     + +A EL 
Sbjct: 480 EGMIHKECFPDGASYGALIRGLCRVSCVEEAYELF 514



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 224/457 (49%), Gaps = 52/457 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  +I  L  A +   A +LLD +          +   + +G  +  R  DA+  F  +
Sbjct: 32  TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTV 91

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR------------------------ 147
               C P   ++  ++  LV+  +++ AF+ +  M                         
Sbjct: 92  AGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGK 151

Query: 148 ------------EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
                       E G  P V + +VL++ LCK +G  D  F + +EM  RG  PD   Y 
Sbjct: 152 LDRAIELLDLMNETGCCPNVITYSVLVEGLCK-AGRTDKGFTLLQEMTRRGFQPDVIMYN 210

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           TL+NGLC+  ++ EA EL + M    C PTVVTY SL+   C+SK V+ A RL + M  +
Sbjct: 211 TLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSER 270

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK------E 309
           G  P+V  Y++++ GLC+      A  LL+ M++ R  P+++TYST+++GLCK      +
Sbjct: 271 GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDAD 330

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
            KL+ A EIL+ MK  G  P+AG Y  +I   C   K Q+A   L  M+   + P+  ++
Sbjct: 331 WKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSF 390

Query: 370 SLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           S+       V+  LCK+ D + A++++  M  R    + + Y++LI    K G++ K+ R
Sbjct: 391 SM-------VIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVR 443

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  EL+++   P   T+++V+  L    ++ +A  ++
Sbjct: 444 VF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMV 479



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 205/414 (49%), Gaps = 19/414 (4%)

Query: 60  LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
           LV A Q   A  L     +E+C   E  + S+  G  +  +   A  + D+M++ G  P 
Sbjct: 8   LVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPG 64

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
              +  V+  L +  +   A  +++ +      P + + N+L+ AL K SG ++ AF+IF
Sbjct: 65  VAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVK-SGRVEEAFQIF 123

Query: 180 REMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
             M     C P+  TY T+INGLC+ GK+  A EL   M    C P V+TY+ L+ GLC+
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK 183

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +   ++   L +EM  +G +P+V  Y++L++GLCK     +A+EL+Q+MI     P +VT
Sbjct: 184 AGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVT 243

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y++L+   C+  ++  A  ++  M  +G  PD   Y  +I+  C   +  +A   L +MV
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV 303

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCK---TDPN----RAFQVYLSMRNRSISVDSLTYS 411
                P+ +T+S       T++ GLCK    D +     A ++   M+      ++ TY+
Sbjct: 304 AARCVPDVITYS-------TIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYA 356

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +I   C+     ++  ++  ++    +PD  ++S V+ +L     +  A ++ 
Sbjct: 357 VVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF 410



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 170/320 (53%), Gaps = 17/320 (5%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +LN+L++A     G    A ++FRE     C P+ +TYG+LI+GLC+ GK+ +A EL  E
Sbjct: 4   ALNLLVRA-----GQHGQAVQLFRE---ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDE 55

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +   P V  +  +I GLC++    +A+  F+ +      P++ T++ L+D L K G 
Sbjct: 56  MRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115

Query: 277 SSQAMELLQ-MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
             +A ++ + M  S +  PN+VTY+T++NGLCK+GKL  A+E+LD M   G  P+   Y 
Sbjct: 116 VEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYS 175

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
            ++   C  G+  +    L EM   G  P+       + ++NT++ GLCK+   + A ++
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQPD-------VIMYNTLLNGLCKSRRLDEALEL 228

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M         +TY+SL+  FC+   + ++ R++  +   GC PD   ++ V+  L  
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 455 RRKMRQAAELLLLELMNKCV 474
             ++  A  LL   +  +CV
Sbjct: 289 DARLDDAQALLKQMVAARCV 308



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 194/393 (49%), Gaps = 16/393 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S+++  L  A +      LL  + +        ++ ++  G  +  R  +A+ +   M
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC PT  +Y +++ +     Q+  AFR  + M E G  P V + N +I  LC+++  
Sbjct: 233 IRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDA-R 291

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCR------LGKIYEAKELFKEMETKACSPT 225
           +D A  + ++M    C PD  TY T+I+GLC+        K+  A E+ + M+   C P 
Sbjct: 292 LDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPN 351

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             TY  +I GLC+++  ++A+ L   M    V P++ ++S ++  LCK      A ++  
Sbjct: 352 AGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFG 411

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           MM  +  +PN V Y+ L++GL K G++ +AV + + M ++  +P    Y  ++   C +G
Sbjct: 412 MMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELM-VESFRPGVATYNSVLDGLCGVG 470

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
           + +EA   ++ M+     P+  ++   IR       GLC+      A++++ ++  +  +
Sbjct: 471 RIEEAVRMVEGMIHKECFPDGASYGALIR-------GLCRVSCVEEAYELFQAVEAKGFA 523

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++   Y+ L+   CKK  +  +  + ++L+  G
Sbjct: 524 MEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 175/346 (50%), Gaps = 13/346 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+ D   ++ +++ L  + +   A +L+  + +  C  T   + S+   + R  +   A
Sbjct: 201 GFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRA 260

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+   M E GC P   +Y TV+A L  + +L  A    + M      P V + + +I  
Sbjct: 261 FRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDG 320

Query: 165 LCKN-----SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           LCK+        ++AA +I   M   GC P++ TY  +I GLCR  K  +A  L + M  
Sbjct: 321 LCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID 380

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
               P + +++ +I  LC+S  ++ A ++F  M  +  +PN   Y++L+DGL KGG   +
Sbjct: 381 SEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDK 440

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A+ + ++M+ +  RP + TY+++L+GLC  G+++EAV +++ M  +   PD   YG +I 
Sbjct: 441 AVRVFELMV-ESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIR 499

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
             C +   +EA      +   G       +++ + ++N +V  LCK
Sbjct: 500 GLCRVSCVEEAYELFQAVEAKG-------FAMEVGVYNVLVNELCK 538



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 167/327 (51%), Gaps = 13/327 (3%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           + T +T   +++L    K V++A  +    +     G   D   ++ +I+ L    +   
Sbjct: 238 YPTVVTYNSLMELFCRSKQVDRAFRLIQVMSER---GCPPDVINYNTVIAGLCRDARLDD 294

Query: 69  AEDLLDRVNKEKC--DIT--EDIFLSICRGYGRVHRPLD---AMRVFDKMKEFGCEPTPK 121
           A+ LL ++   +C  D+     I   +C+ + RV        A  + + MK+ GC P   
Sbjct: 295 AQALLKQMVAARCVPDVITYSTIIDGLCKDW-RVDADWKLEAACEILEMMKQTGCPPNAG 353

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           +Y  V+  L    + + A    R M +  + P ++S +++I +LCK S  +DAA+KIF  
Sbjct: 354 TYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCK-SHDLDAAYKIFGM 412

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  R C P+   Y  LI+GL + G++ +A  +F E+  ++  P V TY S+++GLC    
Sbjct: 413 MSERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGR 471

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           +EEA+R+ E M  K   P+  +Y +L+ GLC+  C  +A EL Q + +K     +  Y+ 
Sbjct: 472 IEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNV 531

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLK 328
           L+N LCK+ +L +A  + +++   G K
Sbjct: 532 LVNELCKKKRLSDAHGVANKLIEAGYK 558


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 230/428 (53%), Gaps = 21/428 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRG--YGRV 98
           G   D  +++ ++  L  A ++   +DL++ + +  C    +T +  +  +CR   + RV
Sbjct: 220 GCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERV 279

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H+      V  +M + GC P  + Y TVL  + +E  L++A      M   G++P V   
Sbjct: 280 HQ------VLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCY 333

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N ++K LC ++   + A ++  EM +  C  D  T+  L++  C+ G +Y   EL ++M 
Sbjct: 334 NTVLKGLC-SAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQML 392

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
              C P V+TYT++ING C+   ++EA+ L + M + G  PN  +Y+ ++ GLC      
Sbjct: 393 EHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWV 452

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A +L+  MI +   PN VT++T++N LCK+G +++A+E+L +M L G  PD   Y  +I
Sbjct: 453 DAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVI 512

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
                 GK  EA   L+ MV  G++PN +       I++++   L K    NR  Q++ +
Sbjct: 513 DGLGKAGKTDEALELLNVMVNKGMSPNTI-------IYSSIASALSKEGRINRVIQMFDN 565

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +++ +I  D++ Y+++I+  CK+G   ++   +  +V  GC+P+E T++ ++  L     
Sbjct: 566 IQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGF 625

Query: 458 MRQAAELL 465
           +++A E+L
Sbjct: 626 VKEAQEML 633



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 210/453 (46%), Gaps = 50/453 (11%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++ M+S    A Q   A  L   V       T   +  + R      R  DA+ V D+M+
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVPVPPNAYT---YFPVVRALCARGRIADALSVLDEMR 142

Query: 113 EFGCEPTPKSYITVLAILVEE---NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
             GC P P  Y  +L            + A R  + +   G    V + N+++ A+C   
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 170 GTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           G++D A ++ R++P   GC PD  +Y  ++ GLC   +    ++L +EM    C P VVT
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           + +LI  LC++   E   ++  +M   G  P++  Y++++DG+CK G    A E+L  M 
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMP 322

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEA--------------------------------- 315
           S   +PN+V Y+T+L GLC   + ++A                                 
Sbjct: 323 SYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVY 382

Query: 316 --VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
             +E+L++M   G  PD   Y  +I+ FC  G   EA   L  M   G  PN +++++  
Sbjct: 383 RVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTI-- 440

Query: 374 RIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
                V++GLC  +     +  +S M  +  S + +T++++I   CKKG + ++  ++ +
Sbjct: 441 -----VLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQ 495

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++L+GC PD  ++S V+  L    K  +A ELL
Sbjct: 496 MLLNGCSPDLISYSTVIDGLGKAGKTDEALELL 528



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 199/405 (49%), Gaps = 15/405 (3%)

Query: 66  FRPAEDLLDRVNKEKCDITED----IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
           FR A  +L  ++   C +       +  ++C   G V   L  +R  D    FGC+P   
Sbjct: 169 FRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLR--DLPTSFGCDPDVV 226

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           SY  VL  L    +          M  +G  P V + N LI  LC+N G  +   ++  +
Sbjct: 227 SYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRN-GLFERVHQVLAQ 285

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M + GCTPD   Y T+++G+C+ G +  A E+   M +    P VV Y +++ GLC ++ 
Sbjct: 286 MVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAER 345

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
            E+A  L  EM       +  T++ L+D  C+ G   + +ELL+ M+     P+++TY+T
Sbjct: 346 WEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTT 405

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           ++NG CKEG + EAV +L  M   G +P+   Y  ++   C   ++ +A + + +M+  G
Sbjct: 406 VINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQG 465

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
            +PN +T+       NTV+  LCK     +A ++   M     S D ++YS++I    K 
Sbjct: 466 CSPNPVTF-------NTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKA 518

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G   ++  +++ +V  G  P+   +S++ +AL    ++ +  ++ 
Sbjct: 519 GKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMF 563



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 169/356 (47%), Gaps = 54/356 (15%)

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N ++   C+ +G + +A ++   +P     P++YTY  ++  LC  G+I +A  +  EM 
Sbjct: 87  NAMVSGYCR-AGQLASARRLAASVP---VPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 219 TKACSPTVVTYTSLINGLC---------------------------------------QS 239
            + C+P    Y  ++   C                                       Q 
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 240 KSVEEAMRLFEEM-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
            SV+EA+RL  ++  S G +P+V +Y++++ GLC      +  +L++ M+     PN+VT
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           ++TL+  LC+ G  +   ++L +M   G  PD  +Y  ++   C  G  + A   LD M 
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMP 322

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCF 417
             G+ PN       +  +NTV++GLC  +   +A ++   M +    +D +T++ L+  F
Sbjct: 323 SYGLKPN-------VVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFF 375

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           C+ G +++   ++++++  GC+PD  T++ V+        + +A  ++LL+ M  C
Sbjct: 376 CQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEA--VMLLKSMAAC 429


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 223/455 (49%), Gaps = 56/455 (12%)

Query: 56  MISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           +I  L  A +F  A      V   KC    IT +I +      GRV    +A ++F+ M 
Sbjct: 71  VIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE---EAFQIFESMH 127

Query: 113 EFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
               C P   +Y TV+  L ++ +L  A      M E G  P V + +VL++ LCK +G 
Sbjct: 128 TSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK-AGR 186

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D  F + +EM  RG  PD   Y TL+NGLC+  ++ EA EL + M    C PTVVTY S
Sbjct: 187 TDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNS 246

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+   C+SK V+ A RL + M  +G  P+V  Y++++ GLC+      A  LL+ M++ R
Sbjct: 247 LMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAAR 306

Query: 292 HRPNIVTYSTLLNGLCKEG------KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
             P+++TYST+++GLCK+       KL+ A EIL+ MK  G  P+AG Y  +I   C   
Sbjct: 307 CVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRAR 366

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404
           K Q+A   L  M+   + P+  ++S+       V+  LCK+ D + A++++  M  R   
Sbjct: 367 KSQQALALLRRMIDSEVVPDLSSFSM-------VIGSLCKSHDLDAAYKIFGMMSERECK 419

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELV-------------LDG-------------- 437
            + + Y++LI    K G++ K+ R+ + +V             LDG              
Sbjct: 420 PNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMV 479

Query: 438 -------CLPDEGTWSAVMTALWDRRKMRQAAELL 465
                  C PD  ++ A++  L     + +A EL 
Sbjct: 480 EGMIHKECFPDGASYGALIRGLCRVSCVEEAYELF 514



 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 224/457 (49%), Gaps = 52/457 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  +I  L  A +   A +LLD +          +   + RG  +  R  DA+  F  +
Sbjct: 32  TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTV 91

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR------------------------ 147
               C P   ++  ++  LV+  +++ AF+ +  M                         
Sbjct: 92  AGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGK 151

Query: 148 ------------EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
                       E G  P V + +VL++ LCK +G  D  F + +EM  RG  PD   Y 
Sbjct: 152 LDRAIELLDLMNETGCCPNVITYSVLVEGLCK-AGRTDKGFTLLQEMTRRGFQPDVIMYN 210

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           TL+NGLC+  ++ EA EL + M    C PTVVTY SL+   C+SK V+ A RL + M  +
Sbjct: 211 TLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSER 270

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK------E 309
           G  P+V  Y++++ GLC+      A  LL+ M++ R  P+++TYST+++GLCK      +
Sbjct: 271 GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDAD 330

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
            KL+ A EIL+ MK  G  P+AG Y  +I   C   K Q+A   L  M+   + P+  ++
Sbjct: 331 WKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSF 390

Query: 370 SLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           S+       V+  LCK+ D + A++++  M  R    + + Y++LI    K G++ K+ R
Sbjct: 391 SM-------VIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVR 443

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  EL+++   P   T+++V+  L    ++ +A  ++
Sbjct: 444 VF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMV 479



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 205/414 (49%), Gaps = 19/414 (4%)

Query: 60  LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
           LV A Q   A  L     +E+C   E  + S+  G  +  +   A  + D+M++ G  P 
Sbjct: 8   LVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPG 64

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
              +  V+  L +  +   A  +++ +      P + + N+L+ AL K SG ++ AF+IF
Sbjct: 65  VAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVK-SGRVEEAFQIF 123

Query: 180 REMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
             M     C P+  TY T+INGLC+ GK+  A EL   M    C P V+TY+ L+ GLC+
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCK 183

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +   ++   L +EM  +G +P+V  Y++L++GLCK     +A+EL+Q+MI     P +VT
Sbjct: 184 AGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVT 243

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y++L+   C+  ++  A  ++  M  +G  PD   Y  +I+  C   +  +A   L +MV
Sbjct: 244 YNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV 303

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCK---TDPN----RAFQVYLSMRNRSISVDSLTYS 411
                P+ +T+S       T++ GLCK    D +     A ++   M+      ++ TY+
Sbjct: 304 AARCVPDVITYS-------TIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYA 356

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +I   C+     ++  ++  ++    +PD  ++S V+ +L     +  A ++ 
Sbjct: 357 VVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF 410



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 170/320 (53%), Gaps = 17/320 (5%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +LN+L++A     G    A ++FRE     C P+ +TYG+LI+GLC+ GK+ +A EL  E
Sbjct: 4   ALNLLVRA-----GQHGQAVQLFRE---ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDE 55

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +   P V  +  +I GLC++    +A+  F+ +      P++ T++ L+D L K G 
Sbjct: 56  MRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115

Query: 277 SSQAMELLQ-MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
             +A ++ + M  S +  PN+VTY+T++NGLCK+GKL  A+E+LD M   G  P+   Y 
Sbjct: 116 VEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYS 175

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
            ++   C  G+  +    L EM   G  P+       + ++NT++ GLCK+   + A ++
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQPD-------VIMYNTLLNGLCKSRRLDEALEL 228

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M         +TY+SL+  FC+   + ++ R++  +   GC PD   ++ V+  L  
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 455 RRKMRQAAELLLLELMNKCV 474
             ++  A  LL   +  +CV
Sbjct: 289 DARLDDAQALLKQMVAARCV 308



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 194/393 (49%), Gaps = 16/393 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S+++  L  A +      LL  + +        ++ ++  G  +  R  +A+ +   M
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC PT  +Y +++ +     Q+  AFR  + M E G  P V + N +I  LC+++  
Sbjct: 233 IRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDA-R 291

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCR------LGKIYEAKELFKEMETKACSPT 225
           +D A  + ++M    C PD  TY T+I+GLC+        K+  A E+ + M+   C P 
Sbjct: 292 LDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPN 351

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             TY  +I GLC+++  ++A+ L   M    V P++ ++S ++  LCK      A ++  
Sbjct: 352 AGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFG 411

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           MM  +  +PN V Y+ L++GL K G++ +AV + + M ++  +P    Y  ++   C +G
Sbjct: 412 MMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELM-VESFRPGVATYNSVLDGLCGVG 470

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
           + +EA   ++ M+     P+  ++   IR       GLC+      A++++ ++  +  +
Sbjct: 471 RIEEAVRMVEGMIHKECFPDGASYGALIR-------GLCRVSCVEEAYELFQAVEAKGFA 523

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++   Y+ L+   CKK  +  +  + ++L+  G
Sbjct: 524 MEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 175/346 (50%), Gaps = 13/346 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+ D   ++ +++ L  + +   A +L+  + +  C  T   + S+   + R  +   A
Sbjct: 201 GFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRA 260

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+   M E GC P   +Y TV+A L  + +L  A    + M      P V + + +I  
Sbjct: 261 FRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDG 320

Query: 165 LCKN-----SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           LCK+        ++AA +I   M   GC P++ TY  +I GLCR  K  +A  L + M  
Sbjct: 321 LCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID 380

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
               P + +++ +I  LC+S  ++ A ++F  M  +  +PN   Y++L+DGL KGG   +
Sbjct: 381 SEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDK 440

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A+ + ++M+ +  RP + TY+++L+GLC  G+++EAV +++ M  +   PD   YG +I 
Sbjct: 441 AVRVFELMV-ESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIR 499

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
             C +   +EA      +   G       +++ + ++N +V  LCK
Sbjct: 500 GLCRVSCVEEAYELFQAVEAKG-------FAMEVGVYNVLVNELCK 538



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 167/327 (51%), Gaps = 13/327 (3%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           + T +T   +++L    K V++A  +    +     G   D   ++ +I+ L    +   
Sbjct: 238 YPTVVTYNSLMELFCRSKQVDRAFRLIQVMSER---GCPPDVINYNTVIAGLCRDARLDD 294

Query: 69  AEDLLDRVNKEKC--DIT--EDIFLSICRGYGRVHRPLD---AMRVFDKMKEFGCEPTPK 121
           A+ LL ++   +C  D+     I   +C+ + RV        A  + + MK+ GC P   
Sbjct: 295 AQALLKQMVAARCVPDVITYSTIIDGLCKDW-RVDADWKLEAACEILEMMKQTGCPPNAG 353

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           +Y  V+  L    + + A    R M +  + P ++S +++I +LCK S  +DAA+KIF  
Sbjct: 354 TYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCK-SHDLDAAYKIFGM 412

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  R C P+   Y  LI+GL + G++ +A  +F E+  ++  P V TY S+++GLC    
Sbjct: 413 MSERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGR 471

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           +EEA+R+ E M  K   P+  +Y +L+ GLC+  C  +A EL Q + +K     +  Y+ 
Sbjct: 472 IEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNV 531

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLK 328
           L+N LCK+ +L +A  + +++   G K
Sbjct: 532 LVNELCKKKRLSDAHGVANKLIEAGYK 558


>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 484

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 234/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQXXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+    KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVBSEKSAYNSLVQSXLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 166/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGXLIENFCKXGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 145/517 (28%), Positives = 250/517 (48%), Gaps = 50/517 (9%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           +K T  Q LQLIR      KAL  F    A+   GF H+  ++ LMI  L  +     A 
Sbjct: 94  SKTTVLQTLQLIRTPA---KALHFFRWVEAK---GFTHNEQSYFLMIEILGRSRNLNAAR 147

Query: 71  DLLDRVNKEK---CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           + +  + K+      + +  F S+ R YG      ++++VF  MKE G  P+  ++ ++L
Sbjct: 148 NFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLL 207

Query: 128 AILVEENQLKLAFRFYRHMREI-GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           +I+++  +  +A + +  M +  G+ P   + N+LI+  C NS  +D  F  F+EM    
Sbjct: 208 SIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNS-MVDEGFWFFKEMSRFK 266

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEE 244
           C PD  TY TL++GLCR GK+  A  + K M  K+   SP VVTYT+LI G C  + + E
Sbjct: 267 CDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAE 326

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-RHRPNIVTYSTLL 303
           A+ L  EM S+G++PN  TY++L+ GLC+     +  E+L+ M+      P+  T +TL+
Sbjct: 327 ALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLI 386

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM------ 357
              C  GKL+EA  + ++M    ++PD+  Y  ++   C  G ++ A  F DE+      
Sbjct: 387 KAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEIL 446

Query: 358 --------VLGGITP--------------NRLTWSLHIR------IHNTVVQGLCKTD-P 388
                   ++    P               R+   L  R       + T++ G C+   P
Sbjct: 447 LHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTP 506

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
              F + + M  R    D+ TY  +I    KKGD   + + +++++    LP    + ++
Sbjct: 507 EAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSI 566

Query: 449 MTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQDV 485
           + AL ++    ++A L+ L ++ + +   +D+    V
Sbjct: 567 LAALVEKGCAHESASLVKL-MLERRIRQNIDLSTHTV 602



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 188/413 (45%), Gaps = 35/413 (8%)

Query: 3   VKTMFKWSTKITSAQVL--QLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMI 57
           VK M K S  ++   V    LIR    ++D+ +AL +     +    G + +  T++ +I
Sbjct: 294 VKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVS---RGLKPNKITYNTLI 350

Query: 58  SKLVSANQFRPAEDLLDRVNKEKCDITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGC 116
             L  A +    +++L+ +  +   I +   L ++ + +  + +  +A  VF+KM E   
Sbjct: 351 QGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRV 410

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMRE-------IGIQPCVASLNVLIKALCKNS 169
           +P   +Y  ++  L +    + A  F+  + E       +G +P VA+ N + + LC N 
Sbjct: 411 QPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNG 470

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
            T  A  ++FR++  RG T D  +Y TLI G CR G      +L   M  +   P   TY
Sbjct: 471 KTKKAE-RVFRQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETY 528

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             +I+GL +      A +  E+M      P    + S++  L + GC+ ++  L+++M+ 
Sbjct: 529 GLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLE 588

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK---IISCFCDIGK 346
           +R R NI   +  +  L K G   +A   +      GL  + G   K   ++S  C   K
Sbjct: 589 RRIRQNIDLSTHTVRLLYKSGLQDKAFMTI------GLLYENGYLVKMEELVSFLCQSRK 642

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
             EA     +M+L  +   +   S+ I + +TV+ GLCK    + AF +Y  +
Sbjct: 643 LLEA----QKMLLFSLEKRQ---SVDIDMCSTVISGLCKAHKVSEAFALYYEL 688



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 119/317 (37%), Gaps = 49/317 (15%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL------ 102
           D++T+S+++  L     FR AE+  D +  EK  +  D+    C+     + P+      
Sbjct: 413 DSATYSVLVRSLCQRGDFRRAEEFFDEL-AEKEILLHDVG---CKPLVAAYNPMFEYLCS 468

Query: 103 -----DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
                 A RVF ++ + G +  P SY T++     E   +  F     M      P   +
Sbjct: 469 NGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAET 527

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
             ++I  L K  G    A K   +M      P +  + +++  L   G  +E+  L K M
Sbjct: 528 YGLMIDGLLKK-GDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASLVKLM 586

Query: 218 ETKACSPTV--------------------------------VTYTSLINGLCQSKSVEEA 245
             +     +                                V    L++ LCQS+ + EA
Sbjct: 587 LERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEELVSFLCQSRKLLEA 646

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            ++      K    ++   S+++ GLCK    S+A  L   ++ K  +  +     L   
Sbjct: 647 QKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQHRLTCQEDLRIS 706

Query: 306 LCKEGKLQEAVEILDRM 322
           L  EG+L EA  +  +M
Sbjct: 707 LEAEGRLNEAKFVSKKM 723


>gi|255660948|gb|ACU25643.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 484

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 228/474 (48%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKKAEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + N +I      SG +D A + F  M +R   PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNFMIWGFFL-SGKVDTANRFFEXMKSREIMPDVITYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ E +  F EM+ +   PTVVTYT+LI G      +++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEXENYFMEMKGRNIEPTVVTYTTLIKGYVSVDRIDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
            PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++G CK G L  A 
Sbjct: 252 NPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPKDNSIFLRLISGQCKVGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I   C  G+Y  A  FLD+++   I   R   SLH+   
Sbjct: 312 DVLKVMIRLSVPTEAGHYGVLIENCCKAGQYDRAVKFLDKVIEKDIIL-RPQSSLHMEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPLIEYLCNNGQTAKAETLVRQLMKLGVLDPIALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + +K +   +   +D +V +G LPD   + +VM +L+
Sbjct: 431 RRKVDSEESAYDSLVQSYLRKNEPADAKAALDSMVENGHLPDSSLYRSVMESLF 484



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 132/292 (45%), Gaps = 11/292 (3%)

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME-TKACSPTVVTYTSLINGLCQSKSVE 243
           R   P S+ +  + N L    K   A + F+ +E +        T+  +I  L ++  + 
Sbjct: 4   RSLVP-SFDHELVYNVLHGAKKAEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLN 62

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
            A  +  +M  KG+E +   +  ++D   K G   ++++L Q M        I +Y  L 
Sbjct: 63  HARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALF 122

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
             + + G+   A    ++M  +G++P    +  +I  F   GK   A  F + M    I 
Sbjct: 123 KVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNFMIWGFFLSGKVDTANRFFEXMKSREIM 182

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVY-LSMRNRSISVDSLTYSSLITCFCKKGD 422
           P+ +T+       NT++ G  +       + Y + M+ R+I    +TY++LI  +     
Sbjct: 183 PDVITY-------NTMINGYYRVKKMEEXENYFMEMKGRNIEPTVVTYTTLIKGYVSVDR 235

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           I  + R+V+E+   G  P+  T+S ++  L +  KM + A+ +L E+++K +
Sbjct: 236 IDDALRLVEEMKGFGINPNAITYSTLLPGLCNAEKMSE-AQSILKEMVDKYI 286


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 232/462 (50%), Gaps = 45/462 (9%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN 64
            + K+S  +    V ++++  KDV+ +L  F   T  +     H+N T + ++  LV A 
Sbjct: 24  ALAKYSRNLVPNTVGRVLQVIKDVDVSLFFFRWVTRSHRGESIHNNFTCNCLLRTLVKAR 83

Query: 65  QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124
                                           R H+     R  D++    C+    +Y 
Sbjct: 84  --------------------------------RHHQAYQIFR--DELLGQHCDTNHITYN 109

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
           T++    +   ++ AF+    M+E G  P V + + +++ALC N+G +  A + FRE   
Sbjct: 110 TLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALC-NTGNLSRAMQYFRESVE 168

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
             C PDS  +  L++GLC+  ++ EA+++ +EM  +   P VVTY SLI+GLC+S  +EE
Sbjct: 169 --CAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEE 226

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A +L E M  + V PN+ TY++L+ G CK GC+  A +L++ MI     P++VT+++L++
Sbjct: 227 ARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLIS 286

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G C++ K+ +A E+L  MK     P+   Y  +IS  CD G+  EA   L EM   GI P
Sbjct: 287 GFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILP 346

Query: 365 NRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           + +T+       N+++   C+     +AFQ+   M  R +  D ++Y +L     K    
Sbjct: 347 DIITY-------NSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERF 399

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++  ++D +   G +P+  T++++M  L   R++ +A  LL
Sbjct: 400 DEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLL 441



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 173/354 (48%), Gaps = 10/354 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++Q +    ++++A+  F   + E A     D+  F++++  L  ANQ   A  +
Sbjct: 141 VTHSSIVQALCNTGNLSRAMQYFRE-SVECAP----DSVLFNILVHGLCKANQLSEARQM 195

Query: 73  LDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           ++ +++    I  D+  + S+  G  + +R  +A ++ + M +    P   +Y T++   
Sbjct: 196 IEEMSER--GIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGY 253

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
            +     LA +    M + G  P V + N LI   C+ S  +D A ++   M    C P+
Sbjct: 254 CKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKS-KIDKACEVLHLMKKGLCAPN 312

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY  LI+GLC  G+  EA EL  EM+ +   P ++TY SLI   C++  +E+A ++  
Sbjct: 313 LVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQN 372

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            M  +GV P+  +Y +L   L K     +A  LL  M      PN+ T+++L+ GLC   
Sbjct: 373 LMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSR 432

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           +L EA  +L  M+  G  P A  Y  +++  C  G+  +A   L  MV  GI P
Sbjct: 433 RLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQP 486



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 122/254 (48%), Gaps = 1/254 (0%)

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           A  L++R+ +         F S+  G+ +  +   A  V   MK+  C P   +Y  +++
Sbjct: 262 AHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLIS 321

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            L +  +   A      M   GI P + + N LI   C+N   ++ AF+I   M  RG  
Sbjct: 322 GLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNF-QIEQAFQIQNLMVERGVI 380

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD  +Y TL   L +  +  EA  L   M      P + T+ SL+ GLC S+ ++EA  L
Sbjct: 381 PDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHL 440

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
              MR  G +P   TY  L+ GLCK G    A E+L MM+S+  +P + +  T+++ L +
Sbjct: 441 LAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAR 500

Query: 309 EGKLQEAVEILDRM 322
           EGK   A+   D++
Sbjct: 501 EGKQDLALHYFDQV 514



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 132/242 (54%), Gaps = 11/242 (4%)

Query: 228 TYTSLINGLCQSKSVEEAMRLF-EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           T   L+  L +++   +A ++F +E+  +  + N  TY++L+ G CK G   +A +LL  
Sbjct: 71  TCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAE 130

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M  + H P++VT+S+++  LC  G L  A++   R  ++   PD+ L+  ++   C   +
Sbjct: 131 MKERGHSPDVVTHSSIVQALCNTGNLSRAMQYF-RESVE-CAPDSVLFNILVHGLCKANQ 188

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
             EA   ++EM   GI P+ +T+       N+++ GLCK+     A Q+  +M  R +  
Sbjct: 189 LSEARQMIEEMSERGIVPDVVTY-------NSLIDGLCKSYRMEEARQLLETMVKRKVRP 241

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +TY++LI  +CK G    + ++++ ++  G  PD  T++++++    + K+ +A E+L
Sbjct: 242 NLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVL 301

Query: 466 LL 467
            L
Sbjct: 302 HL 303


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 222/413 (53%), Gaps = 14/413 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL-SICRGYGRVHRPL 102
           +G   D  T++++I     + +   A ++L+R++     +T +  L S+C   G++    
Sbjct: 170 SGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDS-GKLK--- 225

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM V D+  +  C P   +Y  ++     ++ +  A +    MR+ G +P V + NVLI
Sbjct: 226 EAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 285

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             +CK  G +D A K    MP+ GC P+  T+  ++  +C  G+  +A+ L  +M  K C
Sbjct: 286 NGICKE-GRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGC 344

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP+VVT+  LIN LC+ + +  A+ + E+M   G  PN  +Y+ L+ G C+     +A+E
Sbjct: 345 SPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIE 404

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L++M+S+   P+IVTY+TLL  LCK+GK+  AVEIL+++  +G  P    Y  +I    
Sbjct: 405 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLT 464

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
            +GK + A   L+EM   G+ P+ +T+S       T+++GL +    + A +++  M   
Sbjct: 465 KVGKTEYAVELLEEMRRKGLKPDIITYS-------TLLRGLGREGKVDEAIKIFHDMEGL 517

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           SI   ++TY++++   CK     ++   +  +V  GC P E T++ ++  + D
Sbjct: 518 SIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGIAD 570



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 181/364 (49%), Gaps = 12/364 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           + ++  ++M   G  P   +  +++       + K A R    +   G  P V + NVLI
Sbjct: 124 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLI 183

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK SG +D A ++   M      PD  TY T++  LC  GK+ EA E+      + C
Sbjct: 184 GGYCK-SGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQREC 239

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V+TYT LI   C    V +AM+L +EMR KG +P+V TY+ L++G+CK G   +A++
Sbjct: 240 YPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIK 299

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L  M S   +PN++T++ +L  +C  G+  +A  +L  M  +G  P    +  +I+  C
Sbjct: 300 FLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLC 359

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
                  A + L++M   G  PN L++       N ++ G C+    +RA +    M +R
Sbjct: 360 RKRLLGRAIDVLEKMPKHGCVPNSLSY-------NPLLHGFCQEKKMDRAIEYLEIMVSR 412

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D +TY++L+T  CK G +  +  I+++L   GC P   T++ V+  L    K   A
Sbjct: 413 GCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYA 472

Query: 462 AELL 465
            ELL
Sbjct: 473 VELL 476



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 193/385 (50%), Gaps = 12/385 (3%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           GY +      A+ V ++M      P   +Y T+L  L +  +LK A        +    P
Sbjct: 185 GYCKSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYP 241

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V +  +LI+A C +SG +  A K+  EM  +GC PD  TY  LING+C+ G++ EA + 
Sbjct: 242 DVITYTILIEATCNDSG-VGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKF 300

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
              M +  C P V+T+  ++  +C +    +A RL  +M  KG  P+V T++ L++ LC+
Sbjct: 301 LNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCR 360

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                +A+++L+ M      PN ++Y+ LL+G C+E K+  A+E L+ M  +G  PD   
Sbjct: 361 KRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVT 420

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AF 392
           Y  +++  C  GK   A   L+++   G +P  +T+       NTV+ GL K      A 
Sbjct: 421 YNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITY-------NTVIDGLTKVGKTEYAV 473

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++   MR + +  D +TYS+L+    ++G + ++ +I  ++      P   T++A+M  L
Sbjct: 474 ELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGL 533

Query: 453 WDRRKMRQAAELLLLELMNKCVEAE 477
              ++  +A + L   +   C   E
Sbjct: 534 CKAQQTSRAIDFLAYMVEKGCKPTE 558



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 165/316 (52%), Gaps = 12/316 (3%)

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N+ ++ L +N G ++   K    M  +G  PD     +LI G CR GK  +A  + + +E
Sbjct: 110 NIHLRKLVRN-GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILE 168

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P V+TY  LI G C+S  +++A+ + E M    V P+V TY++++  LC  G   
Sbjct: 169 NSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLK 225

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +AME+L   + +   P+++TY+ L+   C +  + +A+++LD M+ +G KPD   Y  +I
Sbjct: 226 EAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 285

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS- 397
           +  C  G+  EA  FL+ M   G  PN +T       HN +++ +C T      +  LS 
Sbjct: 286 NGICKEGRLDEAIKFLNNMPSYGCKPNVIT-------HNIILRSMCSTGRWMDAERLLSD 338

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M  +  S   +T++ LI   C+K  + ++  +++++   GC+P+  +++ ++      +K
Sbjct: 339 MLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKK 398

Query: 458 MRQAAELLLLELMNKC 473
           M +A E L + +   C
Sbjct: 399 MDRAIEYLEIMVSRGC 414



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 166/334 (49%), Gaps = 10/334 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++    +  V +A+ + D    +   G + D  T++++I+ +    +   A   
Sbjct: 244 ITYTILIEATCNDSGVGQAMKLLDEMRKK---GCKPDVVTYNVLINGICKEGRLDEAIKF 300

Query: 73  LDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           L+ +    C    IT +I L   R      R +DA R+   M   GC P+  ++  ++  
Sbjct: 301 LNNMPSYGCKPNVITHNIIL---RSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINF 357

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L  +  L  A      M + G  P   S N L+   C+    MD A +    M +RGC P
Sbjct: 358 LCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEK-KMDRAIEYLEIMVSRGCYP 416

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY TL+  LC+ GK+  A E+  ++ +K CSP ++TY ++I+GL +    E A+ L 
Sbjct: 417 DIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELL 476

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           EEMR KG++P++ TYS+L+ GL + G   +A+++   M     +P+ VTY+ ++ GLCK 
Sbjct: 477 EEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKA 536

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            +   A++ L  M  +G KP    Y  +I    D
Sbjct: 537 QQTSRAIDFLAYMVEKGCKPTEATYTILIEGIAD 570


>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 484

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 234/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+    KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVBSEKSAYNSLVQSXLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y  L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGXLIENFCKXGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 213/396 (53%), Gaps = 15/396 (3%)

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           IT ++ +S   GY +     +A+ V D+M      P   +Y T+L  L +  +LK A   
Sbjct: 173 ITYNVMIS---GYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
              M +    P V +  +LI+A C++SG +  A K+  EM +RGCTPD  TY  L+NG+C
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSG-VGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           + G++ EA +   +M +  C P V+T+  ++  +C +    +A +L  +M  KG  P+V 
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T++ L++ LC+ G   +A+++L+ M     +PN ++Y+ LL+G CKE K+  A+E L+RM
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G  PD   Y  +++  C  GK ++A   L+++   G +P  +T+       NTV+ G
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITY-------NTVIDG 458

Query: 383 LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           L K     +A ++   MR + +  D++TYSSL+    ++G + ++ +   E    G  P+
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPN 518

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
             T++++M  L   R+  +A + L+  +   C   E
Sbjct: 519 AVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTE 554



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 228/432 (52%), Gaps = 15/432 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL-SICRGYGRVHRP 101
            +G   D  T+++MIS    A +   A  +LDR++     +T +  L S+C   G++ + 
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDS-GKLKQ- 222

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             AM V D+M +  C P   +Y  ++     ++ +  A +    MR+ G  P V + NVL
Sbjct: 223 --AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVL 280

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  +CK  G +D A K   +MP+ GC P+  T+  ++  +C  G+  +A++L  +M  K 
Sbjct: 281 VNGICK-EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            SP+VVT+  LIN LC+   +  A+ + E+M   G +PN  +Y+ L+ G CK     +A+
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAI 399

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           E L+ M+S+   P+IVTY+T+L  LCK+GK+++AVEIL+++  +G  P    Y  +I   
Sbjct: 400 EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
              GK  +A   LDEM    + P+ +T+S       ++V GL +    + A + +     
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYS-------SLVGGLSREGKVDEAIKFFHEFER 512

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +  +++T++S++   CK     ++   +  ++  GC P E +++ ++  L      ++
Sbjct: 513 MGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKE 572

Query: 461 AAELLLLELMNK 472
           A E LL EL NK
Sbjct: 573 ALE-LLNELCNK 583



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 178/337 (52%), Gaps = 12/337 (3%)

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           LV   +L+  F+F  +M   G  P +     LI+  C+   T  AA KI   +   G  P
Sbjct: 112 LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAA-KILEVLEGSGAVP 170

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY  +I+G C+ G+I  A  +   M   + SP VVTY +++  LC S  +++AM + 
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           + M  +   P+V TY+ L++  C+     QAM+LL  M  +   P++VTY+ L+NG+CKE
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+L EA++ L+ M   G +P+   +  I+   C  G++ +A   L +M+  G +P+ +T+
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N ++  LC+     RA  +   M       +SL+Y+ L+  FCK+  + ++  
Sbjct: 348 -------NILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIE 400

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++ +V  GC PD  T++ ++TAL    K+  A E+L
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 162/321 (50%), Gaps = 7/321 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRP 101
           G   D  T++++++ +    +   A   L+ +    C    IT +I L   R      R 
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIIL---RSMCSTGRW 325

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           +DA ++   M   G  P+  ++  ++  L  +  L  A      M + G QP   S N L
Sbjct: 326 MDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPL 385

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +   CK    MD A +    M +RGC PD  TY T++  LC+ GK+ +A E+  ++ +K 
Sbjct: 386 LHGFCKEK-KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP ++TY ++I+GL ++    +A++L +EMR+K ++P+  TYSSL+ GL + G   +A+
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +          RPN VT+++++ GLCK  +   A++ L  M  +G KP    Y  +I   
Sbjct: 505 KFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGL 564

Query: 342 CDIGKYQEAANFLDEMVLGGI 362
              G  +EA   L+E+   G+
Sbjct: 565 AYEGMAKEALELLNELCNKGL 585



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 11/164 (6%)

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           L  L + G+L+E  + L+ M   G  PD      +I  FC +GK ++AA  L+ +   G 
Sbjct: 109 LRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGA 168

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P+ +T+       N ++ G CK  + N A  V   M   S+S D +TY++++   C  G
Sbjct: 169 VPDVITY-------NVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSG 218

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + ++  ++D ++   C PD  T++ ++ A      + QA +LL
Sbjct: 219 KLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLL 262


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/413 (30%), Positives = 221/413 (53%), Gaps = 14/413 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL-SICRGYGRVHRPL 102
           +G   D  T++++I     + +   A  +L+R++     +T +  L S+C   G++    
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDS-GKLK--- 226

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM V D+  +  C P   +Y  ++     ++ +  A +    MR+ G +P V + NVLI
Sbjct: 227 EAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 286

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             +CK  G +D A K    MP  GC P+  T+  ++  +C  G+  +A+ L  +M  K C
Sbjct: 287 NGICKE-GRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGC 345

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP+VVT+  LIN LC+ + +  A+ + E+M   G  PN  +Y+ L+ G C+     +A+E
Sbjct: 346 SPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIE 405

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L++M+S+   P+IVTY+TLL  LCK+GK   AVEIL+++  +G  P    Y  +I    
Sbjct: 406 YLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLT 465

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNR 401
            +GK + AA  L+EM   G+ P+ +T+S       T+++GL C+   + A +++  M   
Sbjct: 466 KVGKTEYAAELLEEMRRKGLKPDIITYS-------TLLRGLGCEGKVDEAIKIFHDMEGL 518

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           SI   ++TY++++   CK     ++   +  +V  GC P + T++ ++  + D
Sbjct: 519 SIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGIAD 571



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 180/364 (49%), Gaps = 12/364 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           + ++  ++M   G  P   +  +++       + + A R    +   G  P V + NVLI
Sbjct: 125 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLI 184

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK SG +D A ++   M      PD  TY T++  LC  GK+ EA E+      + C
Sbjct: 185 GGYCK-SGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQREC 240

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V+TYT LI   C    V +AM+L +EMR KG +P+V TY+ L++G+CK G   +A++
Sbjct: 241 YPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIK 300

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L  M     +PN++T++ +L  +C  G+  +A  +L  M  +G  P    +  +I+  C
Sbjct: 301 FLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLC 360

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
                  A + L++M   G  PN L++       N ++ G C+    +RA +    M +R
Sbjct: 361 RKRLLGRAIDVLEKMPKHGCMPNSLSY-------NPLLHGFCQEKKMDRAIEYLEIMVSR 413

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D +TY++L+T  CK G    +  I+++L   GC P   T++ V+  L    K   A
Sbjct: 414 GCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYA 473

Query: 462 AELL 465
           AELL
Sbjct: 474 AELL 477



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 191/381 (50%), Gaps = 12/381 (3%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           GY +      A++V ++M      P   +Y T+L  L +  +LK A        +    P
Sbjct: 186 GYCKSGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYP 242

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V +  +LI+A C +SG +  A K+  EM  +GC PD  TY  LING+C+ G++ EA + 
Sbjct: 243 DVITYTILIEATCNDSG-VGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKF 301

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
              M    C P V+T+  ++  +C +    +A RL  +M  KG  P+V T++ L++ LC+
Sbjct: 302 LNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCR 361

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                +A+++L+ M      PN ++Y+ LL+G C+E K+  A+E L+ M  +G  PD   
Sbjct: 362 KRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVT 421

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AF 392
           Y  +++  C  GK   A   L+++   G +P  +T+       NTV+ GL K      A 
Sbjct: 422 YNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITY-------NTVIDGLTKVGKTEYAA 474

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++   MR + +  D +TYS+L+     +G + ++ +I  ++      P   T++A+M  L
Sbjct: 475 ELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGL 534

Query: 453 WDRRKMRQAAELLLLELMNKC 473
              ++  +A + L   +   C
Sbjct: 535 CKAQQTSRAIDFLAYMVEKGC 555



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 167/316 (52%), Gaps = 12/316 (3%)

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N+ ++ L +N G ++   K    M  +G  PD     +LI G CR GK  +A  + + +E
Sbjct: 111 NIHLRKLVRN-GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILE 169

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P V+TY  LI G C+S  +++A+++ E M    V P+V TY++++  LC  G   
Sbjct: 170 NSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLK 226

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +AME+L   + +   P+++TY+ L+   C +  + +A+++LD M+ +G KPD   Y  +I
Sbjct: 227 EAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 286

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           +  C  G+  EA  FL+ M L G  PN +T       HN +++ +C T     A ++   
Sbjct: 287 NGICKEGRLDEAIKFLNNMPLYGCQPNVIT-------HNIILRSMCSTGRWMDAERLLAD 339

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M  +  S   +T++ LI   C+K  + ++  +++++   GC+P+  +++ ++      +K
Sbjct: 340 MLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKK 399

Query: 458 MRQAAELLLLELMNKC 473
           M +A E L + +   C
Sbjct: 400 MDRAIEYLEIMVSRGC 415



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 163/334 (48%), Gaps = 10/334 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++    +  V +A+ + D    +   G + D  T++++I+ +    +   A   
Sbjct: 245 ITYTILIEATCNDSGVGQAMKLLDEMRKK---GCKPDVVTYNVLINGICKEGRLDEAIKF 301

Query: 73  LDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           L+ +    C    IT +I L   R      R +DA R+   M   GC P+  ++  ++  
Sbjct: 302 LNNMPLYGCQPNVITHNIIL---RSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINF 358

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L  +  L  A      M + G  P   S N L+   C+    MD A +    M +RGC P
Sbjct: 359 LCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEK-KMDRAIEYLEIMVSRGCYP 417

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY TL+  LC+ GK   A E+  ++ +K CSP ++TY ++I+GL +    E A  L 
Sbjct: 418 DIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELL 477

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           EEMR KG++P++ TYS+L+ GL   G   +A+++   M     +P+ VTY+ ++ GLCK 
Sbjct: 478 EEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKA 537

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            +   A++ L  M  +G KP    Y  +I    D
Sbjct: 538 QQTSRAIDFLAYMVEKGCKPTKATYTILIEGIAD 571


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 221/442 (50%), Gaps = 30/442 (6%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++ +I+ L        AE ++ +V + +       + S+  G+ R H    A++VF++M 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           + GCEP   +Y T++  L +  ++  AF   R M   GI P   +    I ALC + G  
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC-DMGCY 336

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           + A+++F +M N+GC P+ YTY  LI+GLC  G +  A  LF  M      P  VTY +L
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN L +++ ++ A  +   M   G  PN+ TY+ ++ G C  G   +AM ++  M+ + H
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
             N+VTY+T++ G C  G    A+ ILD M+  G KPD   Y ++I  FC I K + A  
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 516

Query: 353 FLDEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQGLC 384
             +EMV  G+ PN +T++                             +++ +N ++ GL 
Sbjct: 517 LFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLT 576

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K +  + A ++   M    I  + +TY+++I   CK G    +  + ++++  GCLP+  
Sbjct: 577 KQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLL 636

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           T+S+++ AL    K+ +A  L 
Sbjct: 637 TYSSLIRALGQEGKVEEAENLF 658



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 179/360 (49%), Gaps = 43/360 (11%)

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA-------------------------- 174
           R++R + E G+QP +   N +I ALCK+    DA                          
Sbjct: 202 RYHRMLSE-GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGH 260

Query: 175 --------AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
                   A ++F +M   GC P++ TY TLINGLC  G++ EA +L +EM      PT 
Sbjct: 261 CRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T T  I  LC     E+A RLF +M++KG EPNV+TY++L+ GLC  G    A+ L   
Sbjct: 321 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHR 380

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M      PN VTY+ L+N L +  +++ A  +L+ M   G  P+   Y ++I  +C +G 
Sbjct: 381 MSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGD 440

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
            ++A   ++ M+  G + N +T+       NT+++G C + +   A ++   MR+     
Sbjct: 441 PKKAMLVMNNMLQRGHSANLVTY-------NTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D  +Y+ LI  FCK   +  +  + +E+V DG  P+E T++A++       K+  A  LL
Sbjct: 494 DEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLL 553



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 213/437 (48%), Gaps = 21/437 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   +  T++ +I+ LV   + + A  +L+ + +  C      +  + +GY  +  P  
Sbjct: 384 DGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKK 443

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V + M + G      +Y T++    +      A R    MR+ G +P   S   LI 
Sbjct: 444 AMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELIC 503

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK S  M++AF +F EM + G  P+  TY  LI+G C+  K+  A  L + M+   C 
Sbjct: 504 GFCKIS-KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V TY  LI+GL +  +   A  L + M  +G+ PNV TY++++DGLCK G +S A+E+
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI +   PN++TYS+L+  L +EGK++EA  +   ++  GL PD   Y K+I  +  
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------IHNTVVQGLCKTDPNRAFQVYL 396
            GK + A NFL  M+  G  P   T+ + I+       + +  +  L    PN +F  Y 
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFG-YQ 741

Query: 397 SMRNRSISVDSLTYS------------SLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +    ++SV S   +            +L++     G   ++  ++  ++  G  PD+  
Sbjct: 742 TTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEA 801

Query: 445 WSAVMTALWDRRKMRQA 461
           +++++ +L   R +  A
Sbjct: 802 YNSLLCSLLRVRNVDLA 818



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 160/332 (48%), Gaps = 43/332 (12%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G   A    +  M + G  P+   Y  +IN LC+ G + +A+ + K++     SP   TY
Sbjct: 194 GMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTY 253

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI- 288
           TS+I G C+   ++ A+++F +M  +G EPN  TYS+L++GLC  G  ++A +L++ MI 
Sbjct: 254 TSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMIL 313

Query: 289 ----------------------------------SKRHRPNIVTYSTLLNGLCKEGKLQE 314
                                             +K   PN+ TY+ L++GLC  G L+ 
Sbjct: 314 HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKV 373

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+ +  RM   G+ P+   Y  +I+   +  + + A   L+ M   G +PN +T+     
Sbjct: 374 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTY----- 428

Query: 375 IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             N +++G C   DP +A  V  +M  R  S + +TY+++I  +C  G+   + RI+D +
Sbjct: 429 --NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM 486

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              GC PDE +++ ++       KM  A  L 
Sbjct: 487 RDGGCKPDEWSYTELICGFCKISKMESAFGLF 518



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 142/290 (48%), Gaps = 9/290 (3%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LIK+ C +   M         +   G     + Y  L+  L RLG      + +  M ++
Sbjct: 151 LIKS-CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 209

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P ++ Y ++IN LC+  +V +A  + +++    + P+ FTY+S++ G C+      A
Sbjct: 210 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +++   M  +   PN VTYSTL+NGLC  G++ EA +++  M L G+ P A      I  
Sbjct: 270 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 329

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMR 399
            CD+G Y++A     +M   G  PN  T++        ++ GLC +   + A  ++  M 
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYT-------ALISGLCVSGILKVAIGLFHRMS 382

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
              +  +++TY++LI    +   I  +  +++ +  +GC P+  T++ ++
Sbjct: 383 RDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 169/402 (42%), Gaps = 33/402 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  +++ +I      ++   A  L + +  +     E  + ++  GY +  +   A
Sbjct: 490 GCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTA 549

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + + MK  GC P  ++Y  ++  L ++N    A    + M E GI P V +   +I  
Sbjct: 550 TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDG 609

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN G+   A ++F +M  +GC P+  TY +LI  L + GK+ EA+ LF E+E     P
Sbjct: 610 LCKN-GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL------------- 271
             +TY  +I     S  VE A      M   G +P ++TY  L+ GL             
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 728

Query: 272 -------CKGGCSSQAMELLQMMISKRHRPN----IVTYSTLLNGLCKEGKLQEAVEILD 320
                  C  G  +   + + +M +K    +    +   + L++ L   G+  EA E+L 
Sbjct: 729 LPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLG 788

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M  QGL PD   Y  ++     +     A      M   G         +H+  +  ++
Sbjct: 789 SMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC-------EVHLNGYKELI 841

Query: 381 QGLCKTDPNRAFQV-YLSMRNRSISVDSLTYSSLITCFCKKG 421
             LC+    +  ++ + +M  R+ + D +  + LI    + G
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 883



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 139/311 (44%), Gaps = 33/311 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MI  L        A ++ +++ ++ C      + S+ R  G+  +  +A  +F ++
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y+ ++   +   +++ AF F   M + G QP + +  VLIK L KN   
Sbjct: 662 ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYL 720

Query: 172 MDAAFKIFREMPNRGCTPD-SYTYGT---------------------------LINGLCR 203
           +  A +    +P+    P+ S+ Y T                           L++ L  
Sbjct: 721 L--ADQRLAALPD--VVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLST 776

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G+ +EA EL   M ++   P    Y SL+  L + ++V+ AM +F+ M ++G E ++  
Sbjct: 777 AGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNG 836

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y  L+  LC+     +A    + M+ +   P+ V  + L++GL ++G     +E L  M+
Sbjct: 837 YKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIME 896

Query: 324 LQGLKPDAGLY 334
            +   P   +Y
Sbjct: 897 TRRYMPSFHIY 907



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 25/295 (8%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYA-NGFRHDNSTFSLMISKLVSANQFRPAED 71
           +T + +++ +  E  V +A  +F    AE   +G   D  T+  MI   + + +   A +
Sbjct: 636 LTYSSLIRALGQEGKVEEAENLF----AELERHGLIPDEITYVKMIEAYIMSGKVEHAFN 691

Query: 72  LLDRVNKEKCDITEDIFLSICRG----YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
            L R+ K  C  T   +  + +G    Y    + L A+        FG + T +  ++V+
Sbjct: 692 FLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVM 751

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
           +  + E    L+               V   N L+  L   +G    A ++   M ++G 
Sbjct: 752 SAKLAELDPGLS---------------VQVQNALVSNL-STAGRWFEANELLGSMISQGL 795

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            PD   Y +L+  L R+  +  A  +FK M T+ C   +  Y  LI  LCQ    +EA  
Sbjct: 796 CPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARI 855

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
            FE M  +   P+    + L+DGL + G     ME L +M ++R+ P+   Y+ L
Sbjct: 856 TFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 200/360 (55%), Gaps = 9/360 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A RVF++M + G  P   S+ +++ +     +L  A  ++  M+ +G+ P      +LI
Sbjct: 347 EAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILI 406

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+N   +  A K+  EM  RGC  D  TY TL+NGLCR   + +A ELFKEM  +  
Sbjct: 407 NGYCRND-DVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGV 465

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   T T+LI+G C+  ++ +A+ LFE M  + ++P+V TY++LMDG CK G   +A E
Sbjct: 466 FPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKE 525

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   MIS+   P+ +++S L+NG C  G + EA  + D MK +G+KP       II  + 
Sbjct: 526 LWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYL 585

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G   +A +FL+ M+  G+ P+ +T+       NT++    K +  +RAF +  +M  R
Sbjct: 586 RAGNLSKANDFLNTMISEGVPPDCITY-------NTLINSFVKEENFDRAFFLINNMEER 638

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  + +TY++++  F + G + ++  ++ +++  G  PD+ T+++++     +  M++A
Sbjct: 639 GLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEA 698



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 202/375 (53%), Gaps = 10/375 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A RV D+M   G  P   ++  +L     +  +  A R +  M + G+ P + S + ++ 
Sbjct: 313 AKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVG 372

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
              +N G +  A   F +M   G  PD+  Y  LING CR   +  A ++  EM  + C 
Sbjct: 373 VFSRN-GELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCV 431

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VVTY +L+NGLC+ K +++A  LF+EM  +GV P+ +T ++L+ G CK G  ++A+ L
Sbjct: 432 MDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSL 491

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M  +  +P++VTY+TL++G CK G++++A E+   M  + + P    +  +I+ FC 
Sbjct: 492 FETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCS 551

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
           +G   EA    DEM   GI P  +T        NT+++G  +  + ++A     +M +  
Sbjct: 552 LGLVSEAFRLWDEMKEKGIKPTLVTC-------NTIIKGYLRAGNLSKANDFLNTMISEG 604

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D +TY++LI  F K+ +  ++  +++ +   G LP+  T++A++   + R    Q A
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGG-FSRHGRMQEA 663

Query: 463 ELLLLELMNKCVEAE 477
           E++L ++++K +  +
Sbjct: 664 EMVLHKMIDKGINPD 678



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 185/366 (50%), Gaps = 10/366 (2%)

Query: 102 LDAMRVF-DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           LD + V+  +M+E G      +Y T++        +  AF     M   G++P + + N 
Sbjct: 240 LDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNA 299

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  LCK  G+ + A ++  EM   G  P++ T+  ++   CR   ++EA+ +F EM  +
Sbjct: 300 LINGLCK-EGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQR 358

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P +++++S++    ++  +  A+  FE+M+  G+ P+   Y+ L++G C+    S A
Sbjct: 359 GVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGA 418

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +++   M+ +    ++VTY+TLLNGLC+   L +A E+   M  +G+ PD      +I  
Sbjct: 419 LKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHG 478

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
           +C  G   +A +  + M L  + P+ +T+       NT++ G CK  +  +A +++  M 
Sbjct: 479 YCKDGNMTKALSLFETMTLRSLKPDVVTY-------NTLMDGFCKVGEMEKAKELWYDMI 531

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +R I    +++S LI  FC  G + ++ R+ DE+   G  P   T + ++        + 
Sbjct: 532 SREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLS 591

Query: 460 QAAELL 465
           +A + L
Sbjct: 592 KANDFL 597



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 175/363 (48%), Gaps = 30/363 (8%)

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V+  +L+     ++ +R+ G    + + N L+ A+ K  G +D A+K++ +    G   +
Sbjct: 165 VQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVK-VGWVDLAWKVYEDFVKSGNIVN 223

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YT   ++N LC+ GK+        EME K     +VTY +L+N  C+   V EA  L +
Sbjct: 224 VYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVD 283

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            M  KG++P +FTY++L++GLCK G   +A  +L  M+     PN  T++ +L   C++ 
Sbjct: 284 CMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKE 343

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            + EA  + + M  +G+ PD   +  I+  F   G+   A  + ++M   G+ P+ + ++
Sbjct: 344 DVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYT 403

Query: 371 LHIR----------------------------IHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           + I                              +NT++ GLC+    + A +++  M  R
Sbjct: 404 ILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVER 463

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D  T ++LI  +CK G++ K+  + + + L    PD  T++ +M       +M +A
Sbjct: 464 GVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKA 523

Query: 462 AEL 464
            EL
Sbjct: 524 KEL 526



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 170/353 (48%), Gaps = 4/353 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+ + ++ +     ++ +AL  F+        G   D   ++++I+     +    A  +
Sbjct: 365 ISFSSIVGVFSRNGELGRALAYFEKMKGV---GLVPDTVIYTILINGYCRNDDVSGALKM 421

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            + + +  C +    + ++  G  R     DA  +F +M E G  P   +  T++    +
Sbjct: 422 RNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCK 481

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  +  A   +  M    ++P V + N L+   CK  G M+ A +++ +M +R   P   
Sbjct: 482 DGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCK-VGEMEKAKELWYDMISREIFPSYI 540

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           ++  LING C LG + EA  L+ EM+ K   PT+VT  ++I G  ++ ++ +A      M
Sbjct: 541 SFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTM 600

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            S+GV P+  TY++L++   K     +A  L+  M  +   PN+VTY+ +L G  + G++
Sbjct: 601 ISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRM 660

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           QEA  +L +M  +G+ PD   Y  +I+ +      +EA    DEM+  G  P+
Sbjct: 661 QEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 120/293 (40%), Gaps = 65/293 (22%)

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD--- 269
           L + + + + +P+++   +LI+ L QSK + EA  L   +  K    +V    SL+    
Sbjct: 88  LIQTIASTSPNPSIIA--TLIHFLVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISTSS 145

Query: 270 --------------------------------------GLC--------------KGGCS 277
                                                 G C              K G  
Sbjct: 146 SNLNSNQNVVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWV 205

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A ++ +  +   +  N+ T + ++N LCK+GKL      L  M+ +G+  D   Y  +
Sbjct: 206 DLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTL 265

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           ++ +C  G   EA   +D M   G+ P   T+       N ++ GLCK     RA +V  
Sbjct: 266 VNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTY-------NALINGLCKEGSYERAKRVLD 318

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            M    +  ++ T++ ++   C+K D+ ++ R+ +E++  G +PD  ++S+++
Sbjct: 319 EMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIV 371


>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 481

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 229/470 (48%), Gaps = 42/470 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K+   AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKNAEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  ++    +  
Sbjct: 73  KKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           ++ R++  M   GI+P   + NVLI      SG ++ A + F ++ +R  TPD  TY T+
Sbjct: 133 MSKRYFNKMVNEGIEPTRHTFNVLIWGFFL-SGKVETANRFFEDLKSREITPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ K   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLVEEMKGLGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  LL+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCDAEKMSEARSLLKEMVDKYIAPKDNSIFIRLISSQCKAGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  +C  GKY +A    D+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSIPTEAGHYGVLIENYCKAGKYDQAVKLFDKLIEKDIIL-RPQSTLHMEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPLIEYLCNNGQTGKAETLVRQLMKLGVQDSISLNTLIRGHSQEGSPDSAFEILKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            R +  +   Y SL+  + K+ +   +   +D ++ +  LPD   + +VM
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKRNEPADAKAALDXMIENDHLPDSSLFRSVM 480



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 118/248 (47%), Gaps = 9/248 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   ++++L Q M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y  L   + + G+   +    ++M  +G++P    +  +I  F   GK 
Sbjct: 107 EELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A  F +++    ITP+ +T+       NT++ G  +      A + +L M+ + I   
Sbjct: 167 ETANRFFEDLKSREITPDVVTY-------NTMINGYTRVKKMEEAEKYFLEMKEKKIDPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY++LI  +     +  + R+V+E+   G  P+  T+S ++  L D  KM +A   LL
Sbjct: 220 VVTYTTLIKGYASIDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCDAEKMSEARS-LL 278

Query: 467 LELMNKCV 474
            E+++K +
Sbjct: 279 KEMVDKYI 286


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 221/442 (50%), Gaps = 30/442 (6%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++ +I+ L        AE ++ +V + +       + S+  G+ R H    A++VF++M 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           + GCEP   +Y T++  L +  ++  AF   R M   GI P   +    I ALC + G  
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC-DMGCY 336

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           + A+++F +M N+GC P+ YTY  LI+GLC  G +  A  LF  M      P  VTY +L
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN L +++ ++ A  +   M   G  PN+ TY+ ++ G C  G   +AM ++  M+ + H
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
             N+VTY+T++ G C  G    A+ ILD M+  G KPD   Y ++I  FC I K + A  
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 516

Query: 353 FLDEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQGLC 384
             +EMV  G+ PN +T++                             +++ +N ++ GL 
Sbjct: 517 LFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLT 576

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K +  + A ++   M    I  + +TY+++I   CK G    +  + ++++  GCLP+  
Sbjct: 577 KQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLL 636

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           T+S+++ AL    K+ +A  L 
Sbjct: 637 TYSSLIRALGQEGKVEEAENLF 658



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 179/360 (49%), Gaps = 43/360 (11%)

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA-------------------------- 174
           R++R + E G+QP +   N +I ALCK+    DA                          
Sbjct: 202 RYHRMLSE-GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGH 260

Query: 175 --------AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
                   A ++F +M   GC P++ TY TLINGLC  G++ EA +L +EM      PT 
Sbjct: 261 CRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T T  I  LC     E+A RLF +M++KG EPNV+TY++L+ GLC  G    A+ L   
Sbjct: 321 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHR 380

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M      PN VTY+ L+N L +  +++ A  +L+ M   G  P+   Y ++I  +C +G 
Sbjct: 381 MSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGD 440

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
            ++A   ++ M+  G + N +T+       NT+++G C + +   A ++   MR+     
Sbjct: 441 PKKAMLVMNNMLQRGHSANLVTY-------NTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D  +Y+ LI  FCK   +  +  + +E+V DG  P+E T++A++       K+  A  LL
Sbjct: 494 DEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLL 553



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 213/437 (48%), Gaps = 21/437 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   +  T++ +I+ LV   + + A  +L+ + +  C      +  + +GY  +  P  
Sbjct: 384 DGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKK 443

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V + M + G      +Y T++    +      A R    MR+ G +P   S   LI 
Sbjct: 444 AMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELIC 503

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK S  M++AF +F EM + G  P+  TY  LI+G C+  K+  A  L + M+   C 
Sbjct: 504 GFCKIS-KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V TY  LI+GL +  +   A  L + M  +G+ PNV TY++++DGLCK G +S A+E+
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI +   PN++TYS+L+  L +EGK++EA  +   ++  GL PD   Y K+I  +  
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------IHNTVVQGLCKTDPNRAFQVYL 396
            GK + A NFL  M+  G  P   T+ + I+       + +  +  L    PN +F  Y 
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFG-YQ 741

Query: 397 SMRNRSISVDSLTYS------------SLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +    ++SV S   +            +L++     G   ++  ++  ++  G  PD+  
Sbjct: 742 TTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEA 801

Query: 445 WSAVMTALWDRRKMRQA 461
           +++++ +L   R +  A
Sbjct: 802 YNSLLCSLLRVRNVDLA 818



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 160/332 (48%), Gaps = 43/332 (12%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G   A    +  M + G  P+   Y  +IN LC+ G + +A+ + K++     SP   TY
Sbjct: 194 GMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTY 253

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI- 288
           TS+I G C+   ++ A+++F +M  +G EPN  TYS+L++GLC  G  ++A +L++ MI 
Sbjct: 254 TSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMIL 313

Query: 289 ----------------------------------SKRHRPNIVTYSTLLNGLCKEGKLQE 314
                                             +K   PN+ TY+ L++GLC  G L+ 
Sbjct: 314 HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKV 373

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+ +  RM   G+ P+   Y  +I+   +  + + A   L+ M   G +PN +T+     
Sbjct: 374 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTY----- 428

Query: 375 IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             N +++G C   DP +A  V  +M  R  S + +TY+++I  +C  G+   + RI+D +
Sbjct: 429 --NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM 486

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              GC PDE +++ ++       KM  A  L 
Sbjct: 487 RDGGCKPDEWSYTELICGFCKISKMESAFGLF 518



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 7/289 (2%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LIK+ C +   M         +   G     + Y  L+  L RLG      + +  M ++
Sbjct: 151 LIKS-CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 209

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P ++ Y ++IN LC+  +V +A  + +++    + P+ FTY+S++ G C+      A
Sbjct: 210 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +++   M  +   PN VTYSTL+NGLC  G++ EA +++  M L G+ P A      I  
Sbjct: 270 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 329

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN 400
            CD+G Y++A     +M   G  PN  T++    I    V GL K     A  ++  M  
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYT--ALISGLCVSGLLKV----AIGLFHRMSR 383

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
             +  +++TY++LI    +   I  +  +++ +  +GC P+  T++ ++
Sbjct: 384 DGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 169/402 (42%), Gaps = 33/402 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  +++ +I      ++   A  L + +  +     E  + ++  GY +  +   A
Sbjct: 490 GCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTA 549

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + + MK  GC P  ++Y  ++  L ++N    A    + M E GI P V +   +I  
Sbjct: 550 TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDG 609

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN G+   A ++F +M  +GC P+  TY +LI  L + GK+ EA+ LF E+E     P
Sbjct: 610 LCKN-GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL------------- 271
             +TY  +I     S  VE A      M   G +P ++TY  L+ GL             
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 728

Query: 272 -------CKGGCSSQAMELLQMMISKRHRPN----IVTYSTLLNGLCKEGKLQEAVEILD 320
                  C  G  +   + + +M +K    +    +   + L++ L   G+  EA E+L 
Sbjct: 729 LPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLG 788

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M  QGL PD   Y  ++     +     A      M   G         +H+  +  ++
Sbjct: 789 SMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC-------EVHLNGYKELI 841

Query: 381 QGLCKTDPNRAFQV-YLSMRNRSISVDSLTYSSLITCFCKKG 421
             LC+    +  ++ + +M  R+ + D +  + LI    + G
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 883



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 139/311 (44%), Gaps = 33/311 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MI  L        A ++ +++ ++ C      + S+ R  G+  +  +A  +F ++
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y+ ++   +   +++ AF F   M + G QP + +  VLIK L KN   
Sbjct: 662 ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYL 720

Query: 172 MDAAFKIFREMPNRGCTPD-SYTYGT---------------------------LINGLCR 203
           +  A +    +P+    P+ S+ Y T                           L++ L  
Sbjct: 721 L--ADQRLAALPD--VVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLST 776

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G+ +EA EL   M ++   P    Y SL+  L + ++V+ AM +F+ M ++G E ++  
Sbjct: 777 AGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNG 836

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y  L+  LC+     +A    + M+ +   P+ V  + L++GL ++G     +E L  M+
Sbjct: 837 YKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIME 896

Query: 324 LQGLKPDAGLY 334
            +   P   +Y
Sbjct: 897 TRRYMPSFHIY 907



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 25/295 (8%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYA-NGFRHDNSTFSLMISKLVSANQFRPAED 71
           +T + +++ +  E  V +A  +F    AE   +G   D  T+  MI   + + +   A +
Sbjct: 636 LTYSSLIRALGQEGKVEEAENLF----AELERHGLIPDEITYVKMIEAYIMSGKVEHAFN 691

Query: 72  LLDRVNKEKCDITEDIFLSICRG----YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
            L R+ K  C  T   +  + +G    Y    + L A+        FG + T +  ++V+
Sbjct: 692 FLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVM 751

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
           +  + E    L+               V   N L+  L   +G    A ++   M ++G 
Sbjct: 752 SAKLAELDPGLS---------------VQVQNALVSNL-STAGRWFEANELLGSMISQGL 795

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            PD   Y +L+  L R+  +  A  +FK M T+ C   +  Y  LI  LCQ    +EA  
Sbjct: 796 CPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARI 855

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
            FE M  +   P+    + L+DGL + G     ME L +M ++R+ P+   Y+ L
Sbjct: 856 TFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910


>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 484

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 232/474 (48%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K+   AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKNAEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +   D+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDXDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVITYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ K   P VVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSILKEMLDKYIAPTDNSIFMRLISSQCKAGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  +C  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIIL-RPQSTLHMEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNXMIEYLCNNGQXAKAETLVRQLLKLGVQDPTALNTLIRGHSREGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKSEPXDAKAALDSMIENDHLPDSSLFRSVMESLF 484



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 167/347 (48%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDXDMWVLMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ +LF++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P+++TY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P+   Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +  + A  +   M ++ I+  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARSILKEMLDKYIAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  QA +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENYCKAGQYDQAVKLL-----DKLIEKDIILRPQ 362


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 221/433 (51%), Gaps = 22/433 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKCDITEDIFLSICRGYGRVHRP 101
           G   D  TFS +I+   +A +   A  L   +   +  K D+    + ++  G+ +    
Sbjct: 143 GVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVV--TYTALIDGFCKSGNL 200

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             AM++   M+   C P   +Y ++L  L +   L  A   +R M   G  P V +   L
Sbjct: 201 EKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTL 260

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I  LC  +  +DAA  +  EM    C PD+ +Y  L++G CRLG+I EAK+LFKEM TK+
Sbjct: 261 IHGLCA-AHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKS 319

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQA 280
           C P  +TYT L+ G C +  +EEA  L E M++  G++P+V TYS ++ G  +     +A
Sbjct: 320 CLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEA 379

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            E +Q MI++   PN VTYS+L++GLCK G++  A+E+L  M  + ++P  G +  +I  
Sbjct: 380 AEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGA 439

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMR 399
            C +G   EA   L  M   G+ P  +T++       T+++G  +T     A++++  MR
Sbjct: 440 LCRLGDMDEAWKLLVAMAAHGLEPGMVTYT-------TLLEGFSRTGRMEIAYELFEVMR 492

Query: 400 NRSIS-------VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            ++         V    +S+LI   CK  +I K+  +V+EL    C P E    A++  L
Sbjct: 493 KKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGL 552

Query: 453 WDRRKMRQAAELL 465
               +  +A +L+
Sbjct: 553 LRAGRTEEAGKLI 565



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 211/391 (53%), Gaps = 14/391 (3%)

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
           +C  T   +  I  G+ + ++   A+  F+KM+EF   P  ++Y  V+  L +      A
Sbjct: 2   ECQPTVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKA 60

Query: 140 FRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTL 197
           +   + MR+   + P + + + +I   CK  G MD A +I REM  R G  PD  TY ++
Sbjct: 61  YEVLKEMRDGKSVAPDLVTYSTVINGFCKQ-GEMDRACEILREMVTRDGIAPDVVTYTSV 119

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE-MRSKG 256
           ++GLCR GK+  A E+ +EM+ K   P   T+++LI G C ++ V+EA++L++E + S  
Sbjct: 120 VDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSS 179

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
            +P+V TY++L+DG CK G   +AM++L +M  ++  PN+VTYS+LL+GLCK G L +A+
Sbjct: 180 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL 239

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           ++  RM  +G  P+   Y  +I   C   K   A   +DEM      P+ +++       
Sbjct: 240 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSY------- 292

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL-V 434
           N ++ G C+      A Q++  M  +S   D +TY+ L+  FC    + ++  +++ +  
Sbjct: 293 NALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKT 352

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G  PD  T+S V+      ++  +AAE +
Sbjct: 353 AAGIDPDVVTYSIVVAGYSRAKRFVEAAEFI 383



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 219/423 (51%), Gaps = 16/423 (3%)

Query: 49  DNSTFSLMISKLVSANQF-RPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAM 105
           D  T+S +I+      +  R  E L + V ++   I  D+  + S+  G  R  +   A 
Sbjct: 76  DLVTYSTVINGFCKQGEMDRACEILREMVTRD--GIAPDVVTYTSVVDGLCRDGKMDRAC 133

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH-MREIGIQPCVASLNVLIKA 164
            +  +MK  G EP   ++  ++       ++  A + Y+  +     +P V +   LI  
Sbjct: 134 EMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDG 193

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK SG ++ A K+   M  R C P+  TY +L++GLC+ G + +A +LF+ M +K C P
Sbjct: 194 FCK-SGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVP 252

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+LI+GLC +  V+ A  L +EM +    P+  +Y++L+DG C+ G   +A +L 
Sbjct: 253 NVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLF 312

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL-QGLKPDAGLYGKIISCFCD 343
           + M +K   P+ +TY+ L+ G C   +L+EA  +L+ MK   G+ PD   Y  +++ +  
Sbjct: 313 KEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSR 372

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             ++ EAA F+ EM+   + PN +T+S       +++ GLCK    + A +V  +M N+ 
Sbjct: 373 AKRFVEAAEFIQEMIARNVAPNAVTYS-------SLIDGLCKAGRVDHAMEVLKNMVNKR 425

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +     T++S+I   C+ GD+ ++ +++  +   G  P   T++ ++       +M  A 
Sbjct: 426 VEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAY 485

Query: 463 ELL 465
           EL 
Sbjct: 486 ELF 488



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 146/257 (56%), Gaps = 12/257 (4%)

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C PTVVT+T +I+G C++  +++A+  FE+MR + V PN  TY+ +++GLCK   +S+A 
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMR-EFVAPNERTYNVVVNGLCKARLTSKAY 61

Query: 282 ELL-QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-GLKPDAGLYGKIIS 339
           E+L +M   K   P++VTYST++NG CK+G++  A EIL  M  + G+ PD   Y  ++ 
Sbjct: 62  EVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVD 121

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS- 397
             C  GK   A   + EM L G+ P++ T+S        ++ G C     + A ++Y   
Sbjct: 122 GLCRDGKMDRACEMVREMKLKGVEPDKFTFS-------ALITGWCNARKVDEALKLYKEI 174

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           + + S   D +TY++LI  FCK G++ K+ +++  +    C+P+  T+S+++  L     
Sbjct: 175 LTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGD 234

Query: 458 MRQAAELLLLELMNKCV 474
           + QA +L        CV
Sbjct: 235 LDQALDLFRRMTSKGCV 251



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 168/358 (46%), Gaps = 47/358 (13%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + +L  +    D+++AL +F   T++   G   +  T++ +I  L +A++   A  L
Sbjct: 220 VTYSSLLHGLCKAGDLDQALDLFRRMTSK---GCVPNVVTYTTLIHGLCAAHKVDAARLL 276

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           +D +    C      + ++  GY R+ R  +A ++F +M    C P   +Y  ++     
Sbjct: 277 MDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCN 336

Query: 133 ENQLKLAFRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
            ++L+ A     +M+   GI P V + ++++    +    ++AA +  +EM  R   P++
Sbjct: 337 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAA-EFIQEMIARNVAPNA 395

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY +LI+GLC+ G++  A E+ K M  K   P+V T+ S+I  LC+   ++EA +L   
Sbjct: 396 VTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVA 455

Query: 252 MRSKGVEPNVFTYSSLMD------------------------------------------ 269
           M + G+EP + TY++L++                                          
Sbjct: 456 MAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIR 515

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           GLCK     +AM +++ + S+   P       +++GL + G+ +EA ++++ +   GL
Sbjct: 516 GLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573


>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 484

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 233/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSAKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDIP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTI 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     ++A  +L+ M+ K   P +   +  L++  C  G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAAKAEALVRQLLKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVMESLF 484



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 164/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  ++P +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDIPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTIINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +    A  +   M ++ ++  D+  +  LI+  C  G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  QA +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDQAVKLL-----DKLIEKDIILRPQ 362


>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37230-like [Cucumis sativus]
          Length = 760

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 143/501 (28%), Positives = 245/501 (48%), Gaps = 43/501 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE-DLLDRV 76
           V  ++ A K    AL  F     E A  F+HD  T   +I  L  A++   A   LLD  
Sbjct: 124 VYNVLHAAKKSEHALNFF--RWVERAGLFQHDRETHFKIIEILGRASKLNHARCILLDMP 181

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           NK      ED+F+ +   YG+     +A+++F KMKE G E + KSY  +   ++   + 
Sbjct: 182 NK-GVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMRRGRY 240

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
            +A R++  M   GI+P   + NV++      S  ++ A + + +M +RG +PD  TY T
Sbjct: 241 MMAKRYFNAMLNEGIEPIRHTYNVMLWGFFL-SLRLETAKRFYEDMKSRGISPDVVTYNT 299

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +ING CR   + EA++ F EM+ K  +PTV++YT++I G       ++A+RLFEEM++ G
Sbjct: 300 MINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAAG 359

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEA 315
            +PN  TYS+L+ GLC      +A ++L  M+++   P +   +  LL+  CK G L  A
Sbjct: 360 EKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRLLSCQCKHGDLDAA 419

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIR 374
           + +L  M    +  +AG YG +I   C  G Y +A   L+ +V   I    + T  +   
Sbjct: 420 MHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEAS 479

Query: 375 IHNTVVQGLC-----------------------------------KTDPNRAFQVYLSMR 399
            +N ++Q LC                                   + +P+ AF++   M 
Sbjct: 480 AYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFNNLIRGHAKEGNPDLAFEMLKIMG 539

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            R +S D+ +Y  LI  +  KG+   +   +D ++ +G  PD   + +VM +L+   ++ 
Sbjct: 540 RRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSALFRSVMESLFADGRV- 598

Query: 460 QAAELLLLELMNKCVEAEVDI 480
           Q A  ++  +++K +   +D+
Sbjct: 599 QTASRVMNSMLDKGITENLDL 619



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 185/443 (41%), Gaps = 42/443 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  T++ MI+          AE     +  +    T   + ++ +GY  V R  
Sbjct: 287 SRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRAD 346

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV-L 161
           DA+R+F++MK  G +P   +Y T+L  L +  +L  A +    M      P   S+ + L
Sbjct: 347 DALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRL 406

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK- 220
           +   CK+ G +DAA  + + M       ++  YG LI   C+ G   +A +L + +  K 
Sbjct: 407 LSCQCKH-GDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKE 465

Query: 221 -------ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
                          Y  +I  LC      +A   F ++  KG++  V  +++L+ G  K
Sbjct: 466 IILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEV-AFNNLIRGHAK 524

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G    A E+L++M  +    +  +Y  L+     +G+  +A   LD M   G  PD+ L
Sbjct: 525 EGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSAL 584

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPN-----RLTWSLHIRIHNTVVQGL----- 383
           +  ++      G+ Q A+  ++ M+  GIT N     ++  +L +R H+    G      
Sbjct: 585 FRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILEALFMRGHDEEALGRINLLM 644

Query: 384 -CKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
            C   P+                    ++SL++  C+KG    + +++D  +   C  + 
Sbjct: 645 NCNCPPD--------------------FNSLLSVLCEKGKTTSAFKLLDFGLERECNIEF 684

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            ++  V+ AL    K   A  +L
Sbjct: 685 SSYEKVLDALLGAGKTLNAYAIL 707


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 236/464 (50%), Gaps = 45/464 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D STF+++I  L  A+Q RPA  +L+ +        E  F ++ +G+        A
Sbjct: 153 GIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGA 212

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  +M  +GC  T  S   ++    +E +++ A RF   + E G  P   + N L+  
Sbjct: 213 LKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNG 272

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+  G ++ A  I   M  +G  PD YTY +LI+G+C+LG+  +A E+ ++M  + CSP
Sbjct: 273 FCR-IGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSP 331

Query: 225 TVVTYTSLIN-----------------------------------GLCQSKSVEEAMRLF 249
             VTY +LI+                                   GLC SK+ + AM +F
Sbjct: 332 NTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMF 391

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           EEM++KG +P+ FTYS L+D LC      +A+ LL+ M S     N V Y+TL++GLCK 
Sbjct: 392 EEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKS 451

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
            ++++A EI D+M+L G+   +  Y  +I   C   + +EA+  +D+M++ G+ P++ T+
Sbjct: 452 RRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTY 511

Query: 370 SLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N+++   C+  D  +A  +  +M +     D  TY +LI   C+ G +  +++
Sbjct: 512 -------NSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASK 564

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           ++  + + G +     ++ V+ AL+ R++ ++    L  E+M K
Sbjct: 565 LLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMR-LFREMMEK 607



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 225/456 (49%), Gaps = 42/456 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+ D + +++ ++ LV  N+ +  E L  ++  E   +    F  + +   + H+   A
Sbjct: 118 GFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPA 177

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + ++M   G +P   ++ T++   +EE  L  A +  + M   G      S+ VL+  
Sbjct: 178 ILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNG 237

Query: 165 LCKNS----------------------------------GTMDAAFKIFREMPNRGCTPD 190
            CK                                    G ++ A  I   M  +G  PD
Sbjct: 238 FCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPD 297

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YTY +LI+G+C+LG+  +A E+ ++M  + CSP  VTY +LI+ LC+   +E A  L  
Sbjct: 298 VYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLAR 357

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            + SKG+ P+V T+++L+ GLC       AME+ + M +K  +P+  TYS L++ LC E 
Sbjct: 358 ILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYER 417

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +L+EA+ +L  M+  G   +A +Y  +I   C   + ++A    D+M L G++ + +T+ 
Sbjct: 418 RLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTY- 476

Query: 371 LHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 NT++ GLCK      A Q+   M    +  D  TY+SL+T FC+ GDI K+  I
Sbjct: 477 ------NTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDI 530

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V  +  +GC PD  T+  ++  L    ++  A++LL
Sbjct: 531 VQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLL 566



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 213/411 (51%), Gaps = 11/411 (2%)

Query: 56  MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG 115
           ++ +L  ++ F     LL ++           F ++ + +   H   + +++ +   E G
Sbjct: 61  LLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILEN--ELG 118

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
            +P    Y   L  LVE+N+LKL    +  M   GI   V++ NVLIKALCK +  +  A
Sbjct: 119 FKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCK-AHQLRPA 177

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             +  EM N G  PD  T+ TL+ G    G +  A ++ K+M    C  T V+   L+NG
Sbjct: 178 ILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNG 237

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C+   VEEA+R   E+  +G  P+  T++SL++G C+ G  + A++++  MI K   P+
Sbjct: 238 FCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPD 297

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           + TY++L++G+CK G+ ++A+EIL +M L+   P+   Y  +IS  C   + + A +   
Sbjct: 298 VYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLAR 357

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414
            +V  G+ P+  T+       NT++QGLC + + + A +++  M+N+    D  TYS LI
Sbjct: 358 ILVSKGLLPDVCTF-------NTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILI 410

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              C +  + ++  ++ E+   GC  +   ++ ++  L   R++  A E+ 
Sbjct: 411 DSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIF 461



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 202/419 (48%), Gaps = 49/419 (11%)

Query: 4   KTMFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           K M  +   +T+  V  L+     E  V +AL      + E   GF  D  TF+ +++  
Sbjct: 217 KQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEE---GFSPDQVTFNSLVNGF 273

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
                   A D++D + ++  D     + S+  G  ++     A+ +  +M    C P  
Sbjct: 274 CRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNT 333

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
            +Y T+++ L +EN+++ A    R +   G+ P V + N LI+ LC  S   D A ++F 
Sbjct: 334 VTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCL-SKNQDIAMEMFE 392

Query: 181 EMPNRGCTPDSYTYG-----------------------------------TLINGLCRLG 205
           EM N+GC PD +TY                                    TLI+GLC+  
Sbjct: 393 EMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSR 452

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +I +A+E+F +ME    S + VTY +LI+GLC++K VEEA +L ++M  +G++P+ FTY+
Sbjct: 453 RIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYN 512

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           SL+   C+ G   +A +++Q M S    P+I TY TL+ GLC+ G++  A ++L  ++++
Sbjct: 513 SLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMK 572

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           G+      Y  +I       + +E      EM+     P+ LT       H  V +GLC
Sbjct: 573 GIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALT-------HKIVFRGLC 624



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 2/277 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+S++I  L    + + A  LL  +    C     ++ ++  G  +  R  DA
Sbjct: 398 GCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDA 457

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FD+M+  G   +  +Y T++  L +  +++ A +    M   G++P   + N L+  
Sbjct: 458 EEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTY 517

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+  G ++ A  I + M + GC PD +TYGTLI GLCR G++  A +L + ++ K    
Sbjct: 518 FCR-VGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVL 576

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ-AMEL 283
           T   Y  +I  L   K  +E MRLF EM  K   P+  T+  +  GLC GG   Q A++ 
Sbjct: 577 TPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDF 636

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
              M+ K   P   ++  L  GLC        +E+++
Sbjct: 637 TVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIELIN 673



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 151/324 (46%), Gaps = 11/324 (3%)

Query: 22  IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81
           I A  D+ + LV         + G   D  TF+ +I  L  +     A ++ + +  + C
Sbjct: 349 IEAATDLARILV---------SKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGC 399

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
              E  +  +        R  +A+ +  +M+  GC      Y T++  L +  +++ A  
Sbjct: 400 KPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEE 459

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            +  M  +G+     + N LI  LCKN    +A+ ++  +M   G  PD +TY +L+   
Sbjct: 460 IFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEAS-QLMDQMIMEGLKPDKFTYNSLLTYF 518

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           CR+G I +A ++ + M +  C P + TY +LI GLC++  V+ A +L   ++ KG+    
Sbjct: 519 CRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTP 578

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK-EGKLQEAVEILD 320
             Y+ ++  L     + + M L + M+ K   P+ +T+  +  GLC   G +QEA++   
Sbjct: 579 HAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTV 638

Query: 321 RMKLQGLKPDAGLYGKIISCFCDI 344
            M  +G+ P+   +G +    C +
Sbjct: 639 EMLEKGILPEFPSFGFLAEGLCSL 662



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K V +A  + D    E   G + D  T++ +++          A D++  +    C+   
Sbjct: 487 KRVEEASQLMDQMIME---GLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCE--P 541

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           DIF   ++  G  R  R   A ++   ++  G   TP +Y  V+  L    + K   R +
Sbjct: 542 DIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLF 601

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           R M E    P   +  ++ + LC   G +  A     EM  +G  P+  ++G L  GLC 
Sbjct: 602 REMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCS 661

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           L       EL   +  KA        TS+I G  + +   +A+
Sbjct: 662 LSMEDTLIELINMVMEKA--QMSERETSMIRGFLKIRKFNDAL 702



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 11/177 (6%)

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S  H P +    TLL  L +         +L ++K  G  P+A  +  +I  F +   + 
Sbjct: 49  STTHHP-LPPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTN---FH 104

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDS 407
           E  N L       I  N L +      +N  +  L + +  +  ++  S M N  I +D 
Sbjct: 105 EIENLLK------ILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDV 158

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            T++ LI   CK   +  +  +++E+   G  PDE T++ +M    +   +  A ++
Sbjct: 159 STFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKM 215


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 221/442 (50%), Gaps = 30/442 (6%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++ +I+ L        AE ++ +V + +       + S+  G+ R H    A++VF++M 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           + GCEP   +Y T++  L +  ++  AF   R M   GI P   +    I ALC + G  
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC-DMGCY 336

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           + A+++F +M N+GC P+ YTY  LI+GLC  G +  A  LF  M      P  VTY +L
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN L +++ ++ A  +   M   G  PN+ TY+ ++ G C  G   +AM ++  M+ + H
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
             N+VTY+T++ G C  G    A+ ILD M+  G KPD   Y ++I  FC I K + A  
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 516

Query: 353 FLDEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQGLC 384
             +EMV  G+ PN +T++                             +++ +N ++ GL 
Sbjct: 517 LFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLT 576

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K +  + A ++   M    I  + +TY+++I   CK G    +  + ++++  GCLP+  
Sbjct: 577 KQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLL 636

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           T+S+++ AL    K+ +A  L 
Sbjct: 637 TYSSLIRALGQEGKVEEAENLF 658



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 179/360 (49%), Gaps = 43/360 (11%)

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA-------------------------- 174
           R++R + E G+QP +   N +I ALCK+    DA                          
Sbjct: 202 RYHRMLSE-GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGH 260

Query: 175 --------AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
                   A ++F +M   GC P++ TY TLINGLC  G++ EA +L +EM      PT 
Sbjct: 261 CRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T T  I  LC     E+A RLF +M++KG EPNV+TY++L+ GLC  G    A+ L   
Sbjct: 321 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHR 380

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M      PN VTY+ L+N L +  +++ A  +L+ M   G  P+   Y ++I  +C +G 
Sbjct: 381 MSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGD 440

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
            ++A   ++ M+  G + N +T+       NT+++G C + +   A ++   MR+     
Sbjct: 441 PKKAMLVMNNMLQRGHSANLVTY-------NTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D  +Y+ LI  FCK   +  +  + +E+V DG  P+E T++A++       K+  A  LL
Sbjct: 494 DEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLL 553



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 213/437 (48%), Gaps = 21/437 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   +  T++ +I+ LV   + + A  +L+ + +  C      +  + +GY  +  P  
Sbjct: 384 DGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKK 443

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V + M + G      +Y T++    +      A R    MR+ G +P   S   LI 
Sbjct: 444 AMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELIC 503

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK S  M++AF +F EM + G  P+  TY  LI+G C+  K+  A  L + M+   C 
Sbjct: 504 GFCKIS-KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V TY  LI+GL +  +   A  L + M  +G+ PNV TY++++DGLCK G +S A+E+
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI +   PN++TYS+L+  L +EGK++EA  +   ++  GL PD   Y K+I  +  
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------IHNTVVQGLCKTDPNRAFQVYL 396
            GK + A NFL  M+  G  P   T+ + I+       + +  +  L    PN +F  Y 
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFG-YQ 741

Query: 397 SMRNRSISVDSLTYS------------SLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +    ++SV S   +            +L++     G   ++  ++  ++  G  PD+  
Sbjct: 742 TTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEA 801

Query: 445 WSAVMTALWDRRKMRQA 461
           +++++ +L   R +  A
Sbjct: 802 YNSLLCSLLRVRNVDLA 818



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 160/332 (48%), Gaps = 43/332 (12%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G   A    +  M + G  P+   Y  +IN LC+ G + +A+ + K++     SP   TY
Sbjct: 194 GMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTY 253

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI- 288
           TS+I G C+   ++ A+++F +M  +G EPN  TYS+L++GLC  G  ++A +L++ MI 
Sbjct: 254 TSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMIL 313

Query: 289 ----------------------------------SKRHRPNIVTYSTLLNGLCKEGKLQE 314
                                             +K   PN+ TY+ L++GLC  G L+ 
Sbjct: 314 HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKV 373

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+ +  RM   G+ P+   Y  +I+   +  + + A   L+ M   G +PN +T+     
Sbjct: 374 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTY----- 428

Query: 375 IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             N +++G C   DP +A  V  +M  R  S + +TY+++I  +C  G+   + RI+D +
Sbjct: 429 --NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM 486

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              GC PDE +++ ++       KM  A  L 
Sbjct: 487 RDGGCKPDEWSYTELICGFCKISKMESAFGLF 518



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 7/289 (2%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LIK+ C +   M         +   G     + Y  L+  L RLG      + +  M ++
Sbjct: 151 LIKS-CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 209

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P ++ Y ++IN LC+  +V +A  + +++    + P+ FTY+S++ G C+      A
Sbjct: 210 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +++   M  +   PN VTYSTL+NGLC  G++ EA +++  M L G+ P A      I  
Sbjct: 270 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 329

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN 400
            CD+G Y++A     +M   G  PN  T++    I    V GL K     A  ++  M  
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYT--ALISGLCVSGLLKV----AIGLFHRMSR 383

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
             +  +++TY++LI    +   I  +  +++ +  +GC P+  T++ ++
Sbjct: 384 DGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 169/402 (42%), Gaps = 33/402 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  +++ +I      ++   A  L + +  +     E  + ++  GY +  +   A
Sbjct: 490 GCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTA 549

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + + MK  GC P  ++Y  ++  L ++N    A    + M E GI P V +   +I  
Sbjct: 550 TSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDG 609

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN G+   A ++F +M  +GC P+  TY +LI  L + GK+ EA+ LF E+E     P
Sbjct: 610 LCKN-GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL------------- 271
             +TY  +I     S  VE A      M   G +P ++TY  L+ GL             
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 728

Query: 272 -------CKGGCSSQAMELLQMMISKRHRPN----IVTYSTLLNGLCKEGKLQEAVEILD 320
                  C  G  +   + + +M +K    +    +   + L++ L   G+  EA E+L 
Sbjct: 729 LPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLG 788

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M  QGL PD   Y  ++     +     A      M   G         +H+  +  ++
Sbjct: 789 SMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC-------EVHLNGYKELI 841

Query: 381 QGLCKTDPNRAFQV-YLSMRNRSISVDSLTYSSLITCFCKKG 421
             LC+    +  ++ + +M  R+ + D +  + LI    + G
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 883



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 139/311 (44%), Gaps = 33/311 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MI  L        A ++ +++ ++ C      + S+ R  G+  +  +A  +F ++
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y+ ++   +   +++ AF F   M + G QP + +  VLIK L KN   
Sbjct: 662 ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYL 720

Query: 172 MDAAFKIFREMPNRGCTPD-SYTYGT---------------------------LINGLCR 203
           +  A +    +P+    P+ S+ Y T                           L++ L  
Sbjct: 721 L--ADQRLAALPD--VVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLST 776

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G+ +EA EL   M ++   P    Y SL+  L + ++V+ AM +F+ M ++G E ++  
Sbjct: 777 AGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNG 836

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y  L+  LC+     +A    + M+ +   P+ V  + L++GL ++G     +E L  M+
Sbjct: 837 YKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIME 896

Query: 324 LQGLKPDAGLY 334
            +   P   +Y
Sbjct: 897 TRRYMPSFHIY 907



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 25/295 (8%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYA-NGFRHDNSTFSLMISKLVSANQFRPAED 71
           +T + +++ +  E  V +A  +F    AE   +G   D  T+  MI   + + +   A +
Sbjct: 636 LTYSSLIRALGQEGKVEEAENLF----AELERHGLIPDEITYVKMIEAYIMSGKVEHAFN 691

Query: 72  LLDRVNKEKCDITEDIFLSICRG----YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
            L R+ K  C  T   +  + +G    Y    + L A+        FG + T +  ++V+
Sbjct: 692 FLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVM 751

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
           +  + E    L+               V   N L+  L   +G    A ++   M ++G 
Sbjct: 752 SAKLAELDPGLS---------------VQVQNALVSNL-STAGRWFEANELLGSMISQGL 795

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            PD   Y +L+  L R+  +  A  +FK M T+ C   +  Y  LI  LCQ    +EA  
Sbjct: 796 CPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARI 855

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
            FE M  +   P+    + L+DGL + G     ME L +M ++R+ P+   Y+ L
Sbjct: 856 TFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910


>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Cucumis sativus]
          Length = 760

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 244/500 (48%), Gaps = 41/500 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ A K    AL  F     E A  F+HD  T   +I  L  A++   A  +L  + 
Sbjct: 124 VYNVLHAAKKSEHALNFF--RWVERAGLFQHDRETHFKIIEILGRASKLNHARCILLDMP 181

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
            +     ED+F+ +   YG+     +A+++F KMKE G E + KSY  +   ++   +  
Sbjct: 182 NKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMRRGRYM 241

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV++      S  ++ A + + +M +RG +PD  TY T+
Sbjct: 242 MAKRYFNAMLNEGIEPIRHTYNVMLWGFFL-SLRLETAKRFYEDMKSRGISPDVVTYNTM 300

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING CR   + EA++ F EM+ K  +PTV++YT++I G       ++A+RLFEEM++ G 
Sbjct: 301 INGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAAGE 360

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC      +A ++L  M+++   P +   +  LL+  CK G L  A+
Sbjct: 361 KPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRLLSCQCKHGDLDAAM 420

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIRI 375
            +L  M    +  +AG YG +I   C  G Y +A   L+ +V   I    + T  +    
Sbjct: 421 HVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASA 480

Query: 376 HNTVVQGLC-----------------------------------KTDPNRAFQVYLSMRN 400
           +N ++Q LC                                   + +P+ AF++   M  
Sbjct: 481 YNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEVAFNNLIRGHAKEGNPDLAFEMLKIMGR 540

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R +S D+ +Y  LI  +  KG+   +   +D ++ +G  PD   + +VM +L+   ++ Q
Sbjct: 541 RGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSALFRSVMESLFADGRV-Q 599

Query: 461 AAELLLLELMNKCVEAEVDI 480
            A  ++  +++K +   +D+
Sbjct: 600 TASRVMNSMLDKGITENLDL 619



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 185/443 (41%), Gaps = 42/443 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  T++ MI+          AE     +  +    T   + ++ +GY  V R  
Sbjct: 287 SRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRAD 346

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV-L 161
           DA+R+F++MK  G +P   +Y T+L  L +  +L  A +    M      P   S+ + L
Sbjct: 347 DALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRL 406

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK- 220
           +   CK+ G +DAA  + + M       ++  YG LI   C+ G   +A +L + +  K 
Sbjct: 407 LSCQCKH-GDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKE 465

Query: 221 -------ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
                          Y  +I  LC      +A   F ++  KG++  V  +++L+ G  K
Sbjct: 466 IILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEV-AFNNLIRGHAK 524

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G    A E+L++M  +    +  +Y  L+     +G+  +A   LD M   G  PD+ L
Sbjct: 525 EGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSAL 584

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPN-----RLTWSLHIRIHNTVVQGL----- 383
           +  ++      G+ Q A+  ++ M+  GIT N     ++  +L +R H+    G      
Sbjct: 585 FRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILEALFMRGHDEEALGRINLLM 644

Query: 384 -CKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
            C   P+                    ++SL++  C+KG    + +++D  +   C  + 
Sbjct: 645 NCNCPPD--------------------FNSLLSVLCEKGKTTSAFKLLDFGLERECNIEF 684

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            ++  V+ AL    K   A  +L
Sbjct: 685 SSYEKVLDALLGAGKTLNAYAIL 707


>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 230/457 (50%), Gaps = 40/457 (8%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+    + LI+ E D  +AL IF+    +   GF H+N+T++ ++ KL  + +F+  + +
Sbjct: 128 ISHESAINLIKRETDPQRALEIFNRVAEQ--RGFSHNNATYATILHKLAKSKKFQAIDAV 185

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE-PTPKSYITVLAILV 131
           L ++  E C   E IFL++ + + ++      + +FD +     E P+ K+  T L +LV
Sbjct: 186 LHQMTYETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIXPIVREKPSLKAISTCLNLLV 245

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT-PD 190
           E NQ                            ++   +G +D+AF++  EM     + P+
Sbjct: 246 ESNQ---------------------------SSITAKNGDIDSAFEVVEEMKKSHVSYPN 278

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
             TY TLINGLC  G++ EA ELF+EM +K    P  +TY +LING C    V+ A+++ 
Sbjct: 279 LITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIM 338

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           E M+  G  PNVF YS+LM+G CK G   +A E+   M S   +P+ V Y+TL+N  C+ 
Sbjct: 339 EFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRA 398

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G++ EA+E+L  M     + D   +  I+   C  G+++EA   L+ +   G+  N+ ++
Sbjct: 399 GRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVYLNKASY 458

Query: 370 SLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
            +       V+  LC+  +  +A Q+   M  R +     T + L+   C+ G +  +  
Sbjct: 459 RI-------VLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVM 511

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  L+  G  P+  +W+ ++  +   RK+  A ELL
Sbjct: 512 ALLGLLELGFKPEPNSWALLVELICRERKLLPAFELL 548



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 141/275 (51%), Gaps = 2/275 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDR-VNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           T+S +I+ L  + + + A +L +  V+K++       + ++  G+    +   A+++ + 
Sbjct: 281 TYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIMEF 340

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           MK+ GC P   +Y  ++    +E +L+ A   +  M+ +G++P       LI   C+ +G
Sbjct: 341 MKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCR-AG 399

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +D A ++ ++M    C  D+ T+  ++ GLCR G+  EA  + + +  +       +Y 
Sbjct: 400 RVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVYLNKASYR 459

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            ++N LC+   +++A +L   M  +GV P+  T + L+  LC+ G    A+  L  ++  
Sbjct: 460 IVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLEL 519

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
             +P   +++ L+  +C+E KL  A E+LD + +Q
Sbjct: 520 GFKPEPNSWALLVELICRERKLLPAFELLDDLVIQ 554



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 21/299 (7%)

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           P   ++ + IN + R      A E+F  + E +  S    TY ++++ L +SK  +    
Sbjct: 125 PKFISHESAINLIKRETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDA 184

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS-KRHRPNIVTYSTLLNGL 306
           +  +M  +  + +   + +LM    K     + +E+   +    R +P++   ST LN L
Sbjct: 185 VLHQMTYETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIXPIVREKPSLKAISTCLNLL 244

Query: 307 ---------CKEGKLQEAVEILDRMKLQGLK-PDAGLYGKIISCFCDIGKYQEAANFLDE 356
                     K G +  A E+++ MK   +  P+   Y  +I+  C  G+ +EA    +E
Sbjct: 245 VESNQSSITAKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEE 304

Query: 357 MVLGG-ITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
           MV    I P+ LT+       N ++ G C     +RA ++   M+    + +   YS+L+
Sbjct: 305 MVSKDQILPDALTY-------NALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALM 357

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             FCK+G + ++  + DE+   G  PD   ++ ++       ++ +A ELL     NKC
Sbjct: 358 NGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKC 416


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/411 (32%), Positives = 209/411 (50%), Gaps = 12/411 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           ++++++  L +A + + A  L D +      +T  I +    GY  +     A+++  +M
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMV---HGYCTLSELETAIKLLSEM 311

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G E  P +Y +V+A+L +E Q+  A R    M   G+    A    ++   C+  G 
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK-GD 370

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           + AA   F EM  RG   D  TY  LINGLCR G++ EA+ + +EME K      VTYT 
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G C+   + EA  +  +M  K V PNV TY++L DGLCK G    A ELL  M SK 
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              NI TY++L+NGLCK G L++A+  +  M   GLKPD   Y  II   C   +   A 
Sbjct: 491 LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAH 550

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTY 410
           + L EM+  GI P  +T+       N ++ G C +      +  L  M  ++I  ++ TY
Sbjct: 551 SLLQEMLDKGIKPTIVTY-------NVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTY 603

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +SL+  +C + ++  +  I   ++    +P+E T++ ++      R M++A
Sbjct: 604 NSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEA 654



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 201/387 (51%), Gaps = 15/387 (3%)

Query: 79  EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138
           EK   + +I L      GR+    DA ++FD+M      P   +Y  ++      ++L+ 
Sbjct: 250 EKNTCSYNILLKALCTAGRIK---DAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELET 303

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +    M   G++    +   +I  LC + G +  A ++  +M   G   D+  + T++
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLC-DEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +G CR G +  A+  F EM+ +  +   VTYT+LINGLC++  ++EA R+ +EM  KG++
Sbjct: 363 SGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
            +  TY+ L+DG CK G  ++A  +   M+ KR  PN+VTY+ L +GLCK+G +  A E+
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL 482

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L  M  +GL+ +   Y  +I+  C  G  ++A   + +M   G+ P+  T++       T
Sbjct: 483 LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYT-------T 535

Query: 379 VVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++  LC++ + +RA  +   M ++ I    +TY+ L+  FC  G +    R+++ ++   
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAEL 464
             P+  T++++M      + M+   E+
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEI 622



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 198/374 (52%), Gaps = 21/374 (5%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +++++G  P+P+S   VL  L     L  A + ++ + E        S N+L+KALC  +
Sbjct: 216 RLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPEKN----TCSYNILLKALC-TA 266

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A ++F EM      PD  TYG +++G C L ++  A +L  EM  +      V Y
Sbjct: 267 GRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAY 323

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           TS+I  LC    V +A+R+ E+M   GV  +   ++++M G C+ G  + A      M  
Sbjct: 324 TSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQK 383

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           +    + VTY+ L+NGLC+ G+L+EA  +L  M+ +GL  DA  Y  +I  +C +GK  E
Sbjct: 384 RGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTE 443

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSL 408
           A    ++MV   +TPN +T++        +  GLCK  D   A ++   M ++ + ++  
Sbjct: 444 AFLVHNKMVQKRVTPNVVTYT-------ALSDGLCKQGDVCAANELLHEMCSKGLELNIF 496

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY+SLI   CK G++ ++ R + ++   G  PD  T++ ++ AL   +++ +A   LL E
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS-LLQE 555

Query: 469 LMNKCVEAEVDIQN 482
           +++K ++  +   N
Sbjct: 556 MLDKGIKPTIVTYN 569



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 191/392 (48%), Gaps = 9/392 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   +   ++ +I+ L    Q   A  +++ +      +   +F ++  G+ R     
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A   FD+M++ G      +Y  ++  L    +LK A R  + M + G+     +  VLI
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G M  AF +  +M  +  TP+  TY  L +GLC+ G +  A EL  EM +K  
Sbjct: 433 DGYCK-VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGL 491

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              + TY SLINGLC++ ++E+AMR   +M   G++P+V+TY++++  LC+     +A  
Sbjct: 492 ELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS 551

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LLQ M+ K  +P IVTY+ L+NG C  G+++    +L+ M  + + P+   Y  ++  +C
Sbjct: 552 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC 611

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
                +        M+   + PN  T+       N +++G CK  +   A   +  M  +
Sbjct: 612 IEKNMKSTTEIYKGMLSQEVVPNENTY-------NILIKGHCKARNMKEALYFHSEMIEK 664

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              + + +Y++LI    KK    ++ R+ +++
Sbjct: 665 GFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 192/422 (45%), Gaps = 10/422 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +    V+ L+  E  V+ A+ + +       +G   D + F+ ++S          A + 
Sbjct: 321 VAYTSVIALLCDEGQVSDAVRVVEDMVM---HGVVLDAAVFTTVMSGFCRKGDLAAARNW 377

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            D + K         + ++  G  R     +A RV  +M++ G +    +Y  ++    +
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             ++  AF  +  M +  + P V +   L   LCK  G + AA ++  EM ++G   + +
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ-GDVCAANELLHEMCSKGLELNIF 496

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +LINGLC+ G + +A     +M+     P V TYT++I  LCQSK ++ A  L +EM
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             KG++P + TY+ LM+G C  G       LL+ M+ K   PN  TY++L+   C E  +
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNM 616

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           +   EI   M  Q + P+   Y  +I   C     +EA  F  EM+  G      +++  
Sbjct: 617 KSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNAL 676

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
           IR+ N       K     A +++  MR   ++ +   Y+  I     + ++  +  + DE
Sbjct: 677 IRLLNK------KKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDE 730

Query: 433 LV 434
           LV
Sbjct: 731 LV 732


>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 481

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 232/470 (49%), Gaps = 42/470 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQXXKAETLVRQLXKLGVQDXTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVM 480



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y  L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGXLIENFCKXGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 484

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 232/474 (48%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K+   AL  F     E +N   H+      +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKNAEHALQFF--RWVERSNLLEHNREIHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  ++    +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           ++ R++  M   GI+P   + NVLI      SG ++ A + F +M +R  TPD  TY T+
Sbjct: 133 MSKRYFNKMVNEGIEPTRHTFNVLIWGFFL-SGKVETANRFFEDMKSREITPDVITYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEEMKGLGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKAGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI- 375
           ++L  M    +  +AG YG +I  +C  G+Y +A   LD+++   I   R   +LH+ + 
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIEYYCKAGQYDKAVKLLDKLIEKDIIL-RPQSTLHMELS 370

Query: 376 -HNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPLIEYLCNNGQTAKAETLVRQLMKLGVQDPTSLNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVMESLF 484



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 117/247 (47%), Gaps = 9/247 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   ++++L Q M 
Sbjct: 48  HLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMIDSYGKAGIVQESVKLFQKME 107

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                  I +Y  L   + + G+   +    ++M  +G++P    +  +I  F   GK +
Sbjct: 108 ELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVE 167

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
            A  F ++M    ITP+ +T+       NT++ G  +      A + +L M+ R I    
Sbjct: 168 TANRFFEDMKSREITPDVITY-------NTMINGYNRVKKMEEAEKYFLEMKERKIDPTV 220

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TY++LI  +     +  + R+V+E+   G  P+  T+S ++  L +  KM +A   +L 
Sbjct: 221 VTYTTLIKGYASVDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCNAEKMSEARS-ILK 279

Query: 468 ELMNKCV 474
           E+++K V
Sbjct: 280 EMVDKYV 286


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 213/396 (53%), Gaps = 15/396 (3%)

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           IT ++ +S   GY +     +A+ V D+M      P   +Y T+L  L +  +LK A   
Sbjct: 173 ITYNVMIS---GYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
              M +    P V +  +LI+A C++SG +  A K+  EM +RGCTPD  TY  L+NG+C
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSG-VGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           + G++ EA +   +M +  C P V+T+  ++  +C +    +A +L  +M  KG  P+V 
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T++ L++ LC+ G   +A+++L+ M     +PN ++Y+ LL+G CKE K+  A+E L+RM
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G  PD   Y  +++  C  GK ++A   L+++   G +P  +T+       NTV+ G
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITY-------NTVIDG 458

Query: 383 LCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           L K     +A ++   MR + +  D++TYSSL+    ++G + ++ +   E    G  P+
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPN 518

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
             T++++M  L   R+  +A + L+  +   C   E
Sbjct: 519 AVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNE 554



 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 134/435 (30%), Positives = 231/435 (53%), Gaps = 21/435 (4%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL-SICRGYGRVHRP 101
            +G   D  T+++MIS    A +   A  +LDR++     +T +  L S+C   G++ + 
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDS-GKLKQ- 222

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             AM V D+M +  C P   +Y  ++     ++ +  A +    MR+ G  P V + NVL
Sbjct: 223 --AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVL 280

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  +CK  G +D A K   +MP+ GC P+  T+  ++  +C  G+  +A++L  +M  K 
Sbjct: 281 VNGICK-EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            SP+VVT+  LIN LC+   +  A+ + E+M   G +PN  +Y+ L+ G CK     +A+
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAI 399

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           E L+ M+S+   P+IVTY+T+L  LCK+GK+++AVEIL+++  +G  P    Y  +I   
Sbjct: 400 EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
              GK  +A   LDEM    + P+ +T+S       ++V GL +    + A + +     
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYS-------SLVGGLSREGKVDEAIKFFHEFER 512

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL---DGCLPDEGTWSAVMTALWDRRK 457
             I  +++T++S++   CK     ++ R +D LV     GC P+E +++ ++  L     
Sbjct: 513 MGIRPNAVTFNSIMLGLCKS---RQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGM 569

Query: 458 MRQAAELLLLELMNK 472
            ++A E LL EL NK
Sbjct: 570 AKEALE-LLNELCNK 583



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 177/337 (52%), Gaps = 12/337 (3%)

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           +V   +L+  F+F  +M   G  P +     LI+  C+   T  AA KI   +   G  P
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAA-KILEILEGSGAVP 170

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY  +I+G C+ G+I  A  +   M   + SP VVTY +++  LC S  +++AM + 
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           + M  +   P+V TY+ L++  C+      AM+LL  M  +   P++VTY+ L+NG+CKE
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+L EA++ L+ M   G +P+   +  I+   C  G++ +A   L +M+  G +P+ +T+
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N ++  LC+     RA  +   M       +SL+Y+ L+  FCK+  + ++  
Sbjct: 348 -------NILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIE 400

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++ +V  GC PD  T++ ++TAL    K+  A E+L
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 165/322 (51%), Gaps = 9/322 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICRGYGRVHR 100
           G   D  T++++++ +    +   A   L+ +    C    IT +I L S+C       R
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS----TGR 324

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            +DA ++   M   G  P+  ++  ++  L  +  L  A      M + G QP   S N 
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+   CK    MD A +    M +RGC PD  TY T++  LC+ GK+ +A E+  ++ +K
Sbjct: 385 LLHGFCKEK-KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSK 443

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            CSP ++TY ++I+GL ++    +A++L +EMR+K ++P+  TYSSL+ GL + G   +A
Sbjct: 444 GCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEA 503

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           ++          RPN VT+++++ GLCK  +   A++ L  M  +G KP+   Y  +I  
Sbjct: 504 IKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEG 563

Query: 341 FCDIGKYQEAANFLDEMVLGGI 362
               G  +EA   L+E+   G+
Sbjct: 564 LAYEGMAKEALELLNELCNKGL 585



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 11/164 (6%)

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           L  + + G+L+E  + L+ M   G  PD      +I  FC +GK ++AA  L+ +   G 
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P+ +T+       N ++ G CK  + N A  V   M   S+S D +TY++++   C  G
Sbjct: 169 VPDVITY-------NVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSG 218

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + ++  ++D ++   C PD  T++ ++ A      +  A +LL
Sbjct: 219 KLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLL 262


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/411 (32%), Positives = 209/411 (50%), Gaps = 12/411 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           ++++++  L +A + + A  L D +      +T  I +    GY  +     A+++  +M
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMV---HGYCTLSELETAIKLLSEM 311

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G E  P +Y +V+A+L +E Q+  A R    M   G+    A    ++   C+  G 
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK-GD 370

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           + AA   F EM  RG   D  TY  LINGLCR G++ EA+ + +EME K      VTYT 
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G C+   + EA  +  +M  K V PNV TY++L DGLCK G    A ELL  M SK 
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              NI TY++L+NGLCK G L++A+  +  M   GLKPD   Y  II   C   +   A 
Sbjct: 491 LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAH 550

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTY 410
           + L EM+  GI P  +T+       N ++ G C +      +  L  M  ++I  ++ TY
Sbjct: 551 SLLQEMLDKGIKPTIVTY-------NVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTY 603

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +SL+  +C + ++  +  I   ++    +P+E T++ ++      R M++A
Sbjct: 604 NSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEA 654



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 201/387 (51%), Gaps = 15/387 (3%)

Query: 79  EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138
           EK   + +I L      GR+    DA ++FD+M      P   +Y  ++      ++L+ 
Sbjct: 250 EKNTCSYNILLKALCTAGRIK---DAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELET 303

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +    M   G++    +   +I  LC + G +  A ++  +M   G   D+  + T++
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLC-DEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +G CR G +  A+  F EM+ +  +   VTYT+LINGLC++  ++EA R+ +EM  KG++
Sbjct: 363 SGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
            +  TY+ L+DG CK G  ++A  +   M+ KR  PN+VTY+ L +GLCK+G +  A E+
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL 482

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L  M  +GL+ +   Y  +I+  C  G  ++A   + +M   G+ P+  T++       T
Sbjct: 483 LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYT-------T 535

Query: 379 VVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++  LC++ + +RA  +   M ++ I    +TY+ L+  FC  G +    R+++ ++   
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAEL 464
             P+  T++++M      + M+   E+
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEI 622



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 198/374 (52%), Gaps = 21/374 (5%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +++++G  P+P+S   VL  L     L  A + ++ + E        S N+L+KALC  +
Sbjct: 216 RLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPEKN----TCSYNILLKALC-TA 266

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A ++F EM      PD  TYG +++G C L ++  A +L  EM  +      V Y
Sbjct: 267 GRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAY 323

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           TS+I  LC    V +A+R+ E+M   GV  +   ++++M G C+ G  + A      M  
Sbjct: 324 TSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQK 383

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           +    + VTY+ L+NGLC+ G+L+EA  +L  M+ +GL  DA  Y  +I  +C +GK  E
Sbjct: 384 RGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTE 443

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSL 408
           A    ++MV   +TPN +T++        +  GLCK  D   A ++   M ++ + ++  
Sbjct: 444 AFLVHNKMVQKRVTPNVVTYT-------ALSDGLCKQGDVCAANELLHEMCSKGLELNIF 496

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY+SLI   CK G++ ++ R + ++   G  PD  T++ ++ AL   +++ +A   LL E
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS-LLQE 555

Query: 469 LMNKCVEAEVDIQN 482
           +++K ++  +   N
Sbjct: 556 MLDKGIKPTIVTYN 569



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 191/392 (48%), Gaps = 9/392 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   +   ++ +I+ L    Q   A  +++ +      +   +F ++  G+ R     
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A   FD+M++ G      +Y  ++  L    +LK A R  + M + G+     +  VLI
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G M  AF +  +M  +  TP+  TY  L +GLC+ G +  A EL  EM +K  
Sbjct: 433 DGYCK-VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGL 491

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              + TY SLINGLC++ ++E+AMR   +M   G++P+V+TY++++  LC+     +A  
Sbjct: 492 ELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS 551

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LLQ M+ K  +P IVTY+ L+NG C  G+++    +L+ M  + + P+   Y  ++  +C
Sbjct: 552 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC 611

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
                +        M+   + PN  T+       N +++G CK  +   A   +  M  +
Sbjct: 612 IEKNMKSTTEIYKGMLSQEVVPNENTY-------NILIKGHCKARNMKEALYFHSEMIEK 664

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              + + +Y++LI    KK    ++ R+ +++
Sbjct: 665 GFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 192/422 (45%), Gaps = 10/422 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +    V+ L+  E  V+ A+ + +       +G   D + F+ ++S          A + 
Sbjct: 321 VAYTSVIALLCDEGQVSDAVRVVEDMVM---HGVVLDAAVFTTVMSGFCRKGDLAAARNW 377

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            D + K         + ++  G  R     +A RV  +M++ G +    +Y  ++    +
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             ++  AF  +  M +  + P V +   L   LCK  G + AA ++  EM ++G   + +
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ-GDVCAANELLHEMCSKGLELNIF 496

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +LINGLC+ G + +A     +M+     P V TYT++I  LCQSK ++ A  L +EM
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             KG++P + TY+ LM+G C  G       LL+ M+ K   PN  TY++L+   C E  +
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNM 616

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           +   EI   M  Q + P+   Y  +I   C     +EA  F  EM+  G      +++  
Sbjct: 617 KSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNAL 676

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
           IR+ N       K     A +++  MR   ++ +   Y+  I     + ++  +  + DE
Sbjct: 677 IRLLNK------KKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDE 730

Query: 433 LV 434
           LV
Sbjct: 731 LV 732


>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 484

 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 234/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMVRLSVPTEAGHYGVLIENFCKAGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+  F++   M 
Sbjct: 371 AYNPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGHSQEGSPDSXFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVMESLF 484



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 166/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  +V  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMVRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/411 (32%), Positives = 209/411 (50%), Gaps = 12/411 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           ++++++  L +A + + A  L D +      +T  I +    GY  +     A+++  +M
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMV---HGYCTLSELETAIKLLSEM 311

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G E  P +Y +V+A+L +E Q+  A R    M   G+    A    ++   C+  G 
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK-GD 370

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           + AA   F EM  RG   D  TY  LINGLCR G++ EA+ + +EME K      VTYT 
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G C+   + EA  +  +M  K V PNV TY++L DGLCK G    A ELL  M SK 
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              NI TY++L+NGLCK G L++A+  +  M   GLKPD   Y  II   C   +   A 
Sbjct: 491 LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAH 550

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTY 410
           + L EM+  GI P  +T+       N ++ G C +      +  L  M  ++I  ++ TY
Sbjct: 551 SLLQEMLDKGIKPTIVTY-------NVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTY 603

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +SL+  +C + ++  +  I   ++    +P+E T++ ++      R M++A
Sbjct: 604 NSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEA 654



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 201/387 (51%), Gaps = 15/387 (3%)

Query: 79  EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138
           EK   + +I L      GR+    DA ++FD+M      P   +Y  ++      ++L+ 
Sbjct: 250 EKNTCSYNILLKALCTAGRIK---DAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELET 303

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +    M   G++    +   +I  LC + G +  A ++  +M   G   D+  + T++
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLC-DEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +G CR G +  A+  F EM+ +  +   VTYT+LINGLC++  ++EA R+ +EM  KG++
Sbjct: 363 SGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
            +  TY+ L+DG CK G  ++A  +   M+ KR  PN+VTY+ L +GLCK+G +  A E+
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL 482

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L  M  +GL+ +   Y  +I+  C  G  ++A   + +M   G+ P+  T++       T
Sbjct: 483 LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYT-------T 535

Query: 379 VVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++  LC++ + +RA  +   M ++ I    +TY+ L+  FC  G +    R+++ ++   
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAEL 464
             P+  T++++M      + M+   E+
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEI 622



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 198/374 (52%), Gaps = 21/374 (5%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +++++G  P+P+S   VL  L     L  A + ++ + E        S N+L+KALC  +
Sbjct: 216 RLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELPEKN----TCSYNILLKALC-TA 266

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A ++F EM      PD  TYG +++G C L ++  A +L  EM  +      V Y
Sbjct: 267 GRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAY 323

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           TS+I  LC    V +A+R+ E+M   GV  +   ++++M G C+ G  + A      M  
Sbjct: 324 TSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQK 383

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           +    + VTY+ L+NGLC+ G+L+EA  +L  M+ +GL  DA  Y  +I  +C +GK  E
Sbjct: 384 RGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTE 443

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSL 408
           A    ++MV   +TPN +T++        +  GLCK  D   A ++   M ++ + ++  
Sbjct: 444 AFLVHNKMVQKRVTPNVVTYT-------ALSDGLCKQGDVCAANELLHEMCSKGLELNIF 496

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY+SLI   CK G++ ++ R + ++   G  PD  T++ ++ AL   +++ +A   LL E
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS-LLQE 555

Query: 469 LMNKCVEAEVDIQN 482
           +++K ++  +   N
Sbjct: 556 MLDKGIKPTIVTYN 569



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 192/395 (48%), Gaps = 9/395 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   +   ++ +I+ L    Q   A  +++ +      +   +F ++  G+ R     
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A   FD+M++ G      +Y  ++  L    +LK A R  + M + G+     +  VLI
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G M  AF +  +M  +  TP+  TY  L +GLC+ G +  A EL  EM +K  
Sbjct: 433 DGYCK-VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGL 491

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              + TY SLINGLC++ ++E+AMR   +M   G++P+V+TY++++  LC+     +A  
Sbjct: 492 ELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS 551

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LLQ M+ K  +P IVTY+ L+NG C  G+++    +L+ M  + + P+   Y  ++  +C
Sbjct: 552 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC 611

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
                +        M+   + PN  T+       N +++G CK  +   A   +  M  +
Sbjct: 612 IEKNMKSTTEIYKGMLSQEVVPNENTY-------NILIKGHCKARNMKEALYFHSEMIEK 664

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
              + + +Y++LI    KK    ++ R+ +++  D
Sbjct: 665 GFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKD 699



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 192/422 (45%), Gaps = 10/422 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +    V+ L+  E  V+ A+ + +       +G   D + F+ ++S          A + 
Sbjct: 321 VAYTSVIALLCDEGQVSDAVRVVEDMVM---HGVVLDAAVFTTVMSGFCRKGDLAAARNW 377

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            D + K         + ++  G  R     +A RV  +M++ G +    +Y  ++    +
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             ++  AF  +  M +  + P V +   L   LCK  G + AA ++  EM ++G   + +
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ-GDVCAANELLHEMCSKGLELNIF 496

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +LINGLC+ G + +A     +M+     P V TYT++I  LCQSK ++ A  L +EM
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             KG++P + TY+ LM+G C  G       LL+ M+ K   PN  TY++L+   C E  +
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNM 616

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           +   EI   M  Q + P+   Y  +I   C     +EA  F  EM+  G      +++  
Sbjct: 617 KSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNAL 676

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
           IR+ N       K     A +++  MR   ++ +   Y+  I     + ++  +  + DE
Sbjct: 677 IRLLNK------KKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDE 730

Query: 433 LV 434
           LV
Sbjct: 731 LV 732


>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 484

 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 234/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSAKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFXVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     ++A  +L+ M+ K   P +   +  L++  C  G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAAKAEALVRQLLKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVMESLF 484



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 164/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFXVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +    A  +   M ++ ++  D+  +  LI+  C  G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  QA +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDQAVKLL-----DKLIEKDIILRPQ 362


>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 481

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 231/470 (49%), Gaps = 42/470 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--XWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A   L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVXLKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM
Sbjct: 431 RRKVDSEKSXYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSSLFRSVM 480



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 119/246 (48%), Gaps = 9/246 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   +++++ Q M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y+ L   + + G+   A    ++M  +G++P    +  +I  F   GK 
Sbjct: 107 EELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A  F ++M    I+P+ +T+       NT++ G  +      A + ++ M+ R+I   
Sbjct: 167 ETANRFFEDMKSREISPDVVTY-------NTMINGYYRVKKMEEAEKYFVEMKGRNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY++LI  +     +  + R+V+E+   G  P+  T+S ++  L +  KM + A + L
Sbjct: 220 VVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSE-ARVXL 278

Query: 467 LELMNK 472
            E+M+K
Sbjct: 279 KEMMDK 284


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 144/515 (27%), Positives = 249/515 (48%), Gaps = 50/515 (9%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           +K T  Q LQLIR      KAL  F    A+   GF H+  ++ LMI  L  +     A 
Sbjct: 94  SKTTVLQTLQLIRTPA---KALHFFRWVEAK---GFTHNEQSYFLMIEILGRSRNLNAAR 147

Query: 71  DLLDRVNKEK---CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           + +  + K+      + +  F S+ R YG      ++++VF  MKE G  P+  ++ ++L
Sbjct: 148 NFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLL 207

Query: 128 AILVEENQLKLAFRFYRHMREI-GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           +I+++  +  +A + +  M +  G+ P   + N+LI+  C NS  +D  F  F+EM    
Sbjct: 208 SIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNS-MVDEGFWFFKEMSRFK 266

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEE 244
           C PD  TY TL++GLCR GK+  A  + K M  K+   SP VVTYT+LI G C  + + E
Sbjct: 267 CDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAE 326

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-RHRPNIVTYSTLL 303
           A+ L  EM S+G++PN  TY++L+ GLC+     +  E+L+ M+      P+  T +TL+
Sbjct: 327 ALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLI 386

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM------ 357
              C  GKL+EA  + ++M    ++PD+  Y  ++   C  G ++ A  F DE+      
Sbjct: 387 KAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEIL 446

Query: 358 --------VLGGITP--------------NRLTWSLHIR------IHNTVVQGLCKT-DP 388
                   ++    P               R+   L  R       + T++ G C+   P
Sbjct: 447 LHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTP 506

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
              F + + M  R    D+ TY  +I    KKGD   + + +++++    LP    + ++
Sbjct: 507 EAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSI 566

Query: 449 MTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
           + AL ++    ++A L+ L ++ + +   +D+   
Sbjct: 567 LAALVEKGCAHESASLVKL-MLERRIRQNIDLSTH 600



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 178/393 (45%), Gaps = 45/393 (11%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D  T++ ++  L  A + + A +++  + K+  +++ ++  + ++ RGY       +A+ 
Sbjct: 270 DVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALS 329

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQL-KLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           +  +M   G +P   +Y T++  L E  +L K+       + + G  P   +LN LIKA 
Sbjct: 330 LLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAH 389

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK----- 220
           C   G ++ AF +F +M      PDS TY  L+  LC+ G    A+E F E+  K     
Sbjct: 390 C-TMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLH 448

Query: 221 --ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
              C P V  Y  +   LC +   ++A R+F ++  +G + +  +Y +L+ G C+ G   
Sbjct: 449 DVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPE 507

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
              +LL +M+ +   P+  TY  +++GL K+G    A + L++M      P   ++  I+
Sbjct: 508 AGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSIL 567

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPN--------------------------RLTWSLH 372
           +   + G   E+A+ +  M+   I  N                           L +SL 
Sbjct: 568 AALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLE 627

Query: 373 IR------IHNTVVQGLCKTDP-NRAFQVYLSM 398
            R      + +TV+ GLCK    + AF +Y  +
Sbjct: 628 KRQSVDIDMCSTVISGLCKAHKVSEAFALYYEL 660



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 180/390 (46%), Gaps = 23/390 (5%)

Query: 3   VKTMFKWSTKITSAQVL--QLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMI 57
           VK M K S  ++   V    LIR    ++D+ +AL +     +    G + +  T++ +I
Sbjct: 294 VKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVS---RGLKPNKITYNTLI 350

Query: 58  SKLVSANQFRPAEDLLDRVNKEKCDITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGC 116
             L  A +    +++L+ +  +   I +   L ++ + +  + +  +A  VF+KM E   
Sbjct: 351 QGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRV 410

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMRE-------IGIQPCVASLNVLIKALCKNS 169
           +P   +Y  ++  L +    + A  F+  + E       +G +P VA+ N + + LC N 
Sbjct: 411 QPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSN- 469

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G    A ++FR++  RG T D  +Y TLI G CR G      +L   M  +   P   TY
Sbjct: 470 GKTKKAERVFRQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETY 528

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             +I+GL +      A +  E+M      P    + S++  L + GC+ ++  L+++M+ 
Sbjct: 529 GLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLE 588

Query: 290 KRHRPNI----VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           +R R NI     T   L++ LC+  KL EA ++L     +    D  +   +IS  C   
Sbjct: 589 RRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAH 648

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           K  EA     E+V  G+  +RLT    +RI
Sbjct: 649 KVSEAFALYYELVEKGMQ-HRLTCQEDLRI 677


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 206/375 (54%), Gaps = 15/375 (4%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           I  GY +V +    +++ ++++  G +P   +Y ++++ L +  ++  A +  R M+   
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I P       LI    K SG +   +K+F EM  +   PD  TY ++I+GLC+ GK+ EA
Sbjct: 353 IFPDNVVYTTLISGFGK-SGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEA 411

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           ++LF EM +K   P  VTYT+LI+G C++  ++EA  L  +M  KG+ PNV TY++L+DG
Sbjct: 412 RKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDG 471

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LCK G    A ELL  M  K  +PN+ TY+ L+NGLCK G +++AV++++ M L G  PD
Sbjct: 472 LCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPD 531

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT---- 386
              Y  I+  +C +G+  +A   L  M+  G+ P  +T+       N ++ G C +    
Sbjct: 532 TITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTF-------NVLMNGFCMSGMLE 584

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           D  R  +    M ++ I  ++ T++SL+  +C + ++  +  I   +   G +PD  T++
Sbjct: 585 DGERLIK---WMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYN 641

Query: 447 AVMTALWDRRKMRQA 461
            ++      R M++A
Sbjct: 642 ILIKGHCKARNMKEA 656



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 215/421 (51%), Gaps = 9/421 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ +IS L    +   AE +L  +  ++      ++ ++  G+G+       
Sbjct: 317 GLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVE 376

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++FD+MK     P   +Y +++  L +  ++  A + +  M   G++P   +   LI  
Sbjct: 377 YKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDG 436

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK +G M  AF +  +M  +G TP+  TY  L++GLC+ G++  A EL  EM  K   P
Sbjct: 437 YCK-AGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQP 495

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY +LINGLC+  ++E+A++L EEM   G  P+  TY+++MD  CK G  ++A ELL
Sbjct: 496 NVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELL 555

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           ++M+ K  +P IVT++ L+NG C  G L++   ++  M  +G+ P+A  +  ++  +C  
Sbjct: 556 RIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIR 615

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
              +        M   G+ P+  T+       N +++G CK  +   A+ ++  M  +  
Sbjct: 616 NNMRATIEIYKGMHAQGVVPDTNTY-------NILIKGHCKARNMKEAWFLHKEMVEKGF 668

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           S+ + +Y+SLI  F K+    ++ ++ +E+   G + ++  +   +   ++        E
Sbjct: 669 SLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLE 728

Query: 464 L 464
           L
Sbjct: 729 L 729



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 211/400 (52%), Gaps = 45/400 (11%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+    K++G  P    +     +LVE   L  A + +  +   G+   V S N+ +  L
Sbjct: 169 RLIYTYKDWGAHPL--VFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARL 226

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
             +   +  AF++FRE    G   ++ +Y  +++ LC+LGK+ EA  L  +ME +   P 
Sbjct: 227 SNSFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPD 286

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV+Y+ +++G CQ + + + ++L EE++ KG++PN +TY+S++  LCK G   +A ++L+
Sbjct: 287 VVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLR 346

Query: 286 MMISKRHR-----------------------------------PNIVTYSTLLNGLCKEG 310
           +M ++R                                     P+ VTY+++++GLC+ G
Sbjct: 347 VMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAG 406

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           K+ EA ++   M  +GLKPD   Y  +I  +C  G+ +EA +  ++MV  G+TPN +T++
Sbjct: 407 KVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYT 466

Query: 371 LHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                   +V GLCK  + + A ++   M  + +  +  TY++LI   CK G+I ++ ++
Sbjct: 467 -------ALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKL 519

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           ++E+ L G  PD  T++ +M A     +M +A ELL + L
Sbjct: 520 MEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIML 559



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 186/392 (47%), Gaps = 10/392 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           DN  ++ +IS    +        L D + ++K       + S+  G  +  + ++A ++F
Sbjct: 356 DNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLF 415

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M   G +P   +Y  ++    +  ++K AF  +  M E G+ P V +   L+  LCK 
Sbjct: 416 SEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCK- 474

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D A ++  EM  +G  P+  TY  LINGLC++G I +A +L +EM+     P  +T
Sbjct: 475 CGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTIT 534

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT++++  C+   + +A  L   M  KG++P + T++ LM+G C  G       L++ M+
Sbjct: 535 YTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWML 594

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K   PN  T+++L+   C    ++  +EI   M  QG+ PD   Y  +I   C     +
Sbjct: 595 DKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMK 654

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           EA     EMV  G       +SL    +N++++G  K      A +++  MR      + 
Sbjct: 655 EAWFLHKEMVEKG-------FSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEK 707

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             Y   +    ++G+   +  + DE  ++ CL
Sbjct: 708 EIYDIFVDVNYEEGNWENTLELCDE-AIEKCL 738


>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 484

 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 231/474 (48%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K+   AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKNXEHALQFF--RWVERSNLFEHNRETHHKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDLWVLLIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   G +P   + N++I      SG ++ A + F +M +R   PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGNEPTRHTFNIMIWGFFL-SGKVETANRFFEDMKSREIMPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I G  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 IXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++G CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAQKMSEARSILKEMVEKYITPTDNSIFLRLISGQCKAGDLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  +C  G+Y +A   LD ++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDRLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPLIEYLCNNGQTAKAESLVRQLMKLGVQDPTALNALIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R    +   Y SL+  + KK +   +   +D ++ +G LPD   + +VM +L+
Sbjct: 431 RRKARSEKSAYDSLVQSYLKKSEPADAKAALDSMIENGHLPDPALFRSVMESLF 484



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 147/308 (47%), Gaps = 14/308 (4%)

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           I  +MP +G   D   +  LI+   + G + E+ +LF++ME      T+ +Y +L   + 
Sbjct: 67  ILLDMPKKGLEWDEDLWVLLIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIL 126

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +      A R F +M S+G EP   T++ ++ G    G    A    + M S+   P++V
Sbjct: 127 RRGRYMMAKRYFNKMLSEGNEPTRHTFNIMIWGFFLSGKVETANRFFEDMKSREIMPDVV 186

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+T++ G  +  K++EA +    MK + ++P    Y  +I  +  + +  +A   ++EM
Sbjct: 187 TYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEM 246

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS-VDSLTYSSLIT 415
              GI PN +T+S       T++ GLC     + A  +   M  + I+  D+  +  LI+
Sbjct: 247 KGFGIKPNAITYS-------TLLPGLCNAQKMSEARSILKEMVEKYITPTDNSIFLRLIS 299

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
             CK GD+  +A ++  ++      + G +  ++       +  QA +LL     ++ +E
Sbjct: 300 GQCKAGDLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLL-----DRLIE 354

Query: 476 AEVDIQNQ 483
            ++ ++ Q
Sbjct: 355 KDIILRPQ 362


>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 484

 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 232/474 (48%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSAKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +   ++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKAILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPARHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC  G   +A  +L+ M+ K   P +   +  L++  C  G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAGKMIEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAAKAEALVRQLLKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVMESLF 484



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 163/347 (46%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKAILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PARHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPN-RAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC       A  +   M ++ ++  D+  +  LI+  C  G++  +A ++  ++  
Sbjct: 261 LLPGLCNAGKMIEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  QA +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDQAVKLL-----DKLIEKDIILRPQ 362


>gi|255660932|gb|ACU25635.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 484

 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 231/474 (48%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K+   AL  F     E +N F+H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKNSEHALQFF--RWVERSNLFQHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG      +++++F KM E G E T KSY  +  ++    +  
Sbjct: 73  KKGLEWDEDMWVLMIDSYGNGGIVQESVKLFQKMDELGVERTIKSYDALFKVISRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + N++I      SG ++ A + F +M NR  TPD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNIMIWGFFL-SGKVETANRFFEDMKNREITPDVITYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           + N  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++G CK G L  A 
Sbjct: 252 KANAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISGQCKAGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  +C  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIIL-RPQSTLHMESS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N ++  LC                                      P+ AF++   M 
Sbjct: 371 AYNPLIGYLCNNGQTAKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + K+ +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKRSEPADAKAALDSMIENDHLPDSSLFRSVMESLF 484



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 164/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFQHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +     G + E+ +LF++M+      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGNGGIVQESVKLFQKMDELGVERTIKSYDALFKVISRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M ++   P+++TY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNIMIWGFFLSGKVETANRFFEDMKNREITPDVITYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI  N +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKANAITYS-------T 260

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +  + A  +   M ++ I+  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISGQCKAGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  QA +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENYCKAGQYDQAVKLL-----DKLIEKDIILRPQ 362


>gi|255580552|ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529296|gb|EEF31265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 483

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 131/407 (32%), Positives = 211/407 (51%), Gaps = 15/407 (3%)

Query: 22  IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81
           ++  +D +KAL +F        NGFRHD  ++S ++ KL  + +F   E +L  +     
Sbjct: 55  VKEVEDPDKALSLFHDYLQ---NGFRHDYPSYSALVYKLARSRRFEAVETVLGYLQDFNV 111

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
              + +F+++   YG+V     A+R+F++M  F C  T +S+  +L +LV+ ++L  A +
Sbjct: 112 RCRDTLFIALFEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQ 171

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            +    E+G +      N+LIK   K  G    A K+F EM  R   P   TY +LI  L
Sbjct: 172 LFDRSSEMGFRLNSVPFNILIKGWLK-KGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYL 230

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           CR G++ +AK LFK+M  K   P  VTY  L+ GLC     +EA ++  +M  +G +P  
Sbjct: 231 CRNGELGKAKGLFKDMIKKGKRPNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGCKPKN 290

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             +  LM+ L K G   +A  LL  M  +R RP++V Y+ L+N LCKEGK+ EA + L  
Sbjct: 291 LNFGVLMNDLGKKGKIEEAKLLLLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLFE 350

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M++ G + +A  Y  +   FC +G+++E    L+ M++    P        I   N  V 
Sbjct: 351 MQIGGCEANAATYRMLADGFCQVGEFEEGLKVLNAMLVSRHAP-------RIETFNCFVV 403

Query: 382 GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           GL K+   + AF V   M  R +++DS  + +L+ C C +   H+ A
Sbjct: 404 GLMKSGSIDGAFFVLEEMEKRKMALDSDGWEALVRCCCSE---HRGA 447



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 166/356 (46%), Gaps = 9/356 (2%)

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           V  P  A+ +F    + G      SY  ++  L    + +       ++++  ++ C  +
Sbjct: 58  VEDPDKALSLFHDYLQNGFRHDYPSYSALVYKLARSRRFEAVETVLGYLQDFNVR-CRDT 116

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L + +       G +  A ++F EM    C     ++  L+N L    ++++AK+LF   
Sbjct: 117 LFIALFEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLFDRS 176

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                    V +  LI G  +     +A ++F+EM  + VEP+V TY+SL+  LC+ G  
Sbjct: 177 SEMGFRLNSVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGEL 236

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A  L + MI K  RPN VTY+ L+ GLC  G+ +EA ++L  M+ +G KP    +G +
Sbjct: 237 GKAKGLFKDMIKKGKRPNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGCKPKNLNFGVL 296

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           ++     GK +EA   L EM      P+       + I+N ++  LCK      A++   
Sbjct: 297 MNDLGKKGKIEEAKLLLLEMKKRRFRPD-------VVIYNILINHLCKEGKVAEAYKTLF 349

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            M+      ++ TY  L   FC+ G+  +  ++++ +++    P   T++  +  L
Sbjct: 350 EMQIGGCEANAATYRMLADGFCQVGEFEEGLKVLNAMLVSRHAPRIETFNCFVVGL 405



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 124/295 (42%), Gaps = 8/295 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +F +    G   D  +Y  L+  L R  +    + +   ++          + +L
Sbjct: 62  DKALSLFHDYLQNGFRHDYPSYSALVYKLARSRRFEAVETVLGYLQDFNVRCRDTLFIAL 121

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
                +   V +A+RLF EM        + ++++L++ L        A +L         
Sbjct: 122 FEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLFDRSSEMGF 181

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           R N V ++ L+ G  K+G+  +A ++ D M  + ++P    Y  +I   C  G+  +A  
Sbjct: 182 RLNSVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELGKAKG 241

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYS 411
              +M+  G  PN +T++L       +++GLC   +   A ++   M  R     +L + 
Sbjct: 242 LFKDMIKKGKRPNAVTYAL-------LMEGLCSMGEYKEAKKMLFDMEYRGCKPKNLNFG 294

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            L+    KKG I ++  ++ E+      PD   ++ ++  L    K+ +A + L 
Sbjct: 295 VLMNDLGKKGKIEEAKLLLLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLF 349



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 127/275 (46%), Gaps = 9/275 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A  LF +           +Y++L+  L +S+  E    +   ++   V      + +L 
Sbjct: 63  KALSLFHDYLQNGFRHDYPSYSALVYKLARSRRFEAVETVLGYLQDFNVRCRDTLFIALF 122

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           +   K G  ++A+ L   M        + +++ LLN L    +L +A ++ DR    G +
Sbjct: 123 EHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLFDRSSEMGFR 182

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D 387
            ++  +  +I  +   G++ +A    DEM+   + P+ +T+       N+++  LC+  +
Sbjct: 183 LNSVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTY-------NSLIGYLCRNGE 235

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
             +A  ++  M  +    +++TY+ L+   C  G+  ++ +++ ++   GC P    +  
Sbjct: 236 LGKAKGLFKDMIKKGKRPNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGCKPKNLNFGV 295

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +M  L  + K+ + A+LLLLE+  +    +V I N
Sbjct: 296 LMNDLGKKGKIEE-AKLLLLEMKKRRFRPDVVIYN 329



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 97/198 (48%), Gaps = 5/198 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A ++   M+  GC+P   ++  ++  L ++ +++ A      M++   +P V   N+LI
Sbjct: 273 EAKKMLFDMEYRGCKPKNLNFGVLMNDLGKKGKIEEAKLLLLEMKKRRFRPDVVIYNILI 332

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +  A+K   EM   GC  ++ TY  L +G C++G+  E  ++   M     
Sbjct: 333 NHLCK-EGKVAEAYKTLFEMQIGGCEANAATYRMLADGFCQVGEFEEGLKVLNAMLVSRH 391

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P + T+   + GL +S S++ A  + EEM  + +  +   + +L+   C     + ++ 
Sbjct: 392 APRIETFNCFVVGLMKSGSIDGAFFVLEEMEKRKMALDSDGWEALVRCCCSEHRGAGSVL 451

Query: 283 LLQMMISKRHRPNIVTYS 300
           L + +I    R N+V  S
Sbjct: 452 LCESLI----RHNLVVAS 465



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 106/240 (44%), Gaps = 16/240 (6%)

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            +N + + +  ++A+ LF +    G   +  +YS+L+  L +    S+  E ++ ++   
Sbjct: 51  FVNNVKEVEDPDKALSLFHDYLQNGFRHDYPSYSALVYKLAR----SRRFEAVETVLGYL 106

Query: 292 HRPNIVTYSTLLNGLC----KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
              N+    TL   L     K G + +A+ + + M           +  +++   D  + 
Sbjct: 107 QDFNVRCRDTLFIALFEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRL 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG-LCKTDPNRAFQVYLSMRNRSISVD 406
            +A    D     G   N + +       N +++G L K +  +A +V+  M  R +   
Sbjct: 167 FDAKQLFDRSSEMGFRLNSVPF-------NILIKGWLKKGEWYQAGKVFDEMLERKVEPS 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY+SLI   C+ G++ K+  +  +++  G  P+  T++ +M  L    + ++A ++L 
Sbjct: 220 VVTYNSLIGYLCRNGELGKAKGLFKDMIKKGKRPNAVTYALLMEGLCSMGEYKEAKKMLF 279


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 227/491 (46%), Gaps = 58/491 (11%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S K+    V+ +++  K+ +  L  F   +      F+HD S F  M+++LV    F PA
Sbjct: 73  SPKLKPHHVVNILQTHKNTDSVLRFFFWISRR--KFFKHDMSCFVSMLNRLVRDRLFAPA 130

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
                       D    + +  CR  G V R    +   +   +FG   T  S+ T+L  
Sbjct: 131 ------------DHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGY--TLCSFTTLLIQ 176

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN--------------------- 168
           L + + + LA   Y  M   GI+P + + N +I  LCK                      
Sbjct: 177 LGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPN 236

Query: 169 -------------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
                        +  +D AF +F  M   GC P+S TY TLINGLC  G++ EA ++ +
Sbjct: 237 AFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLE 296

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM  K   PTV TYT  +  LC +    EA+ L  +M+ +G  PN+ T+++L+ GL + G
Sbjct: 297 EMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDG 356

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
               A+ L   M++    P  VTY+ L+N LC EG+ + A  I   M   G  P    Y 
Sbjct: 357 KFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYN 416

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQV 394
           +II CFC +G  Q+A    D+M+  G +PN +T+       NT++ G CK  + N A ++
Sbjct: 417 EIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITY-------NTLIYGYCKQGNLNNAMRL 469

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M+   +  D+ TY+ LI+ F + G +  +  +   ++  G  P+  T++A++   ++
Sbjct: 470 LEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFN 529

Query: 455 RRKMRQAAELL 465
             K+  A  L 
Sbjct: 530 LAKVDDALALF 540



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 222/447 (49%), Gaps = 22/447 (4%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +++ A  +FD    +   G   ++ T+S +I+ L S  +   A D+L+ + ++  + T  
Sbjct: 252 NLDLAFAMFDRMVKD---GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVY 308

Query: 87  IF----LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            +    +S+C          +A+ +  KMK+ GC P  +++  +++ L  + + ++A   
Sbjct: 309 TYTIPLVSLCDAGCSS----EAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGL 364

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           Y  M   G+ P   + N LI  LC   G  + AF IF+ M + G  P + TY  +I   C
Sbjct: 365 YHKMLADGLVPTTVTYNALINQLCV-EGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFC 423

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
            +G I +A  +F +M     SP V+TY +LI G C+  ++  AMRL E M+  G++P+ +
Sbjct: 424 LMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAW 483

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY+ L+ G  +GG    A  L   M+     PN VTY+ +++G     K+ +A+ +  +M
Sbjct: 484 TYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKM 543

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
              G  P +  Y  +IS F       EA NF  +MV  G+ PN +T++       + + G
Sbjct: 544 VESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYT-------SFIDG 596

Query: 383 LCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA--RIVDELVLDGCL 439
           LC+      AF+++  M  R+   +  TYSSLI   C++G    +    ++  L   GC 
Sbjct: 597 LCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCE 656

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLL 466
           P+  T++ ++  L    +  +A +L++
Sbjct: 657 PNVDTYTTLVKGLCGEGRCYEADQLVV 683



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 221/466 (47%), Gaps = 31/466 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G R    TF+ MI+ L    + + A+ ++  + +         + S+  G+ R H    
Sbjct: 196 SGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDL 255

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +FD+M + GC+P   +Y T++  L  E +L+ A      M + GI+P V +  + + 
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLV 315

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LC ++G    A ++  +M  RGC P+  T+  LI+GL R GK   A  L+ +M      
Sbjct: 316 SLC-DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PT VTY +LIN LC     E A  +F+ M S G  P+  TY+ ++   C  G   +AM +
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M+     PN++TY+TL+ G CK+G L  A+ +L+ MK  GLKPDA  Y ++IS F  
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHI----------------------------RI 375
            GK + A +    M+  GI+PN +T++  I                            + 
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +N ++ G  KT+  + A      M  + +  + +TY+S I   C+ G    + +I  E+ 
Sbjct: 555 YNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME 614

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAEL-LLLELMNKCVEAEVD 479
                P+  T+S+++  L    +   A    LL  L +   E  VD
Sbjct: 615 KRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVD 660



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 192/413 (46%), Gaps = 11/413 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G      T++ +I++L    +F  A  +   +       +   +  I + +  +    
Sbjct: 370 ADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQ 429

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            AM +FDKM + G  P   +Y T++    ++  L  A R    M+  G++P   +   LI
Sbjct: 430 KAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELI 489

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               +  G ++ A  +F  M   G +P+  TY  +I+G   L K+ +A  LF +M     
Sbjct: 490 SGFSR-GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGN 548

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P+  TY  +I+G  ++ S+ EA     +M  +G+ PNV TY+S +DGLC+ G +  A +
Sbjct: 549 LPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA--VEILDRMKLQGLKPDAGLYGKIISC 340
           +   M  + + PN+ TYS+L+ GLC+EG+ ++A    +L R+   G +P+   Y  ++  
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKG 668

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
            C  G+  EA   +  M   G+ P+         I+  ++ G CK      A  ++ SM 
Sbjct: 669 LCGEGRCYEADQLVVSMQKKGLQPSE-------EIYRALLIGECKNLKVESALNIFYSMD 721

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
                +    Y +LI   CK+  I ++  I   ++      DE  W+ ++  L
Sbjct: 722 TLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGL 774



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 184/420 (43%), Gaps = 23/420 (5%)

Query: 5   TMFKW--------STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLM 56
           T+FKW        ST+ T  ++++      D+ KA+VIFD        G   +  T++ +
Sbjct: 398 TIFKWMLSHGSLPSTQ-TYNEIIKCFCLMGDIQKAMVIFDKMLKA---GSSPNVITYNTL 453

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116
           I           A  LL+ +           +  +  G+ R  +   A  +F  M E G 
Sbjct: 454 IYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI 513

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
            P   +Y  ++       ++  A   +  M E G  P   + NV+I    K + ++  A 
Sbjct: 514 SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK-TNSISEAE 572

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
               +M  +G  P+  TY + I+GLCR G+   A ++F EME +   P + TY+SLI GL
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGL 632

Query: 237 CQSKSVEEA--MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           CQ    E+A    L   +   G EPNV TY++L+ GLC  G   +A +L+  M  K  +P
Sbjct: 633 CQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP 692

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           +   Y  LL G CK  K++ A+ I   M   G +     Y  +I   C     +EA    
Sbjct: 693 SEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIF 752

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413
             M+      + + W++       ++ GL K  + +   ++   M +R+ +++  TY  L
Sbjct: 753 QTMLEKHWNSDEVVWTV-------LLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVML 805



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           ++  +GCEP   +Y T++  L  E +   A +    M++ G+QP       L+   CKN 
Sbjct: 649 RLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNL 708

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             +++A  IF  M   G       Y  LI  LC+   I EA+ +F+ M  K  +   V +
Sbjct: 709 -KVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVW 767

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T L++GL +    +  ++L   M S+    N  TY  L   L    C+ +  ++ Q +
Sbjct: 768 TVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIKIPQISQQL 825



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 9/124 (7%)

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV-DSLTYSSLI 414
           +M+  GI P+ LT+       NT++  LCK    +  ++ +S   R  +  ++ TY+SLI
Sbjct: 192 KMLNSGIRPSLLTF-------NTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLI 244

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
              C+  ++  +  + D +V DGC P+  T+S ++  L    ++ +A + +L E++ K +
Sbjct: 245 LGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMD-MLEEMVQKGI 303

Query: 475 EAEV 478
           E  V
Sbjct: 304 EPTV 307


>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 484

 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 234/474 (49%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y+ L+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYNLLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 166/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGLLIENFCKAGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 194/357 (54%), Gaps = 9/357 (2%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M+  G  P   +    +    +  ++ L F     + ++G+QP + +   LI  LCK  
Sbjct: 118 QMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCK-V 176

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G    A ++F +M  +GC PD YTY T+INGLC++G+   A  L K+ME   C P +VTY
Sbjct: 177 GEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTY 236

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           ++LI+ LC+ + V EA+ +F  M++KG+ P++FTY+SL+ GLCK     +A  LL  M S
Sbjct: 237 STLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTS 296

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
               P+IVT++ L++  CKEGK+ EA+ +L  M   G++P+   Y  ++  +       E
Sbjct: 297 LNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVE 356

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A      M+  G  PN  ++       N ++ G CK    + A Q++  M ++ ++ +++
Sbjct: 357 ARKLFHVMITKGCKPNIFSY-------NILINGYCKAKRIDEAMQLFNEMIHQGLTPNNV 409

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +Y++LI  FC+ G + ++  +   +  +G LPD  T+S ++     +  + +A  L 
Sbjct: 410 SYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLF 466



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 219/435 (50%), Gaps = 10/435 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G +    TF+ +I+ L    +F  A +L D +  + C      + +I  G  ++     A
Sbjct: 158 GLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAA 217

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  KM+E GC+P   +Y T++  L  +  +  A   + +M+  GI P + +   LI+ 
Sbjct: 218 AGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQG 277

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK S   +A+  +  EM +    PD  T+  L++  C+ GK+ EA  + K M      P
Sbjct: 278 LCKFSRWKEAS-ALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEP 336

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY+SL+ G      V EA +LF  M +KG +PN+F+Y+ L++G CK     +AM+L 
Sbjct: 337 NVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLF 396

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             MI +   PN V+Y+TL++G C+ GKL+EA ++   M   G  PD   Y  ++  FC  
Sbjct: 397 NEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQ 456

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSI 403
           G   +A      M    + PN + +++       +V  +CK+  ++ A +++  +  + +
Sbjct: 457 GYLGKAFRLFRAMQSTYLKPNLVMYTI-------LVHAMCKSGNHKDARKLFSELFVQGL 509

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
                 Y+++I   CK+G + ++      +  DGC PDE +++ ++  L  + K    A 
Sbjct: 510 QPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLL-QHKDESRAL 568

Query: 464 LLLLELMNKCVEAEV 478
           LL+ E+ ++   A+V
Sbjct: 569 LLVGEMRDRGFIADV 583



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 221/452 (48%), Gaps = 53/452 (11%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNK--EKCDITEDIF-LSICRG-YGRVHRPLDAMRVF 108
           F+ ++S +V   Q+    D++  ++K  E   ++ +I+ LSI    + ++ R      V 
Sbjct: 95  FAKLLSAIVKMGQYY---DVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVL 151

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            K+ + G +PT  ++ T++  L +  +   A   +  M   G QP V + N +I  LCK 
Sbjct: 152 AKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCK- 210

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G   AA  + ++M   GC P+  TY TLI+ LCR   + EA ++F  M+ K  SP + T
Sbjct: 211 IGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFT 270

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRS---------------------------------- 254
           YTSLI GLC+    +EA  L  EM S                                  
Sbjct: 271 YTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMT 330

Query: 255 -KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             GVEPNV TYSSLM G        +A +L  +MI+K  +PNI +Y+ L+NG CK  ++ 
Sbjct: 331 EMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRID 390

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA+++ + M  QGL P+   Y  +I  FC +GK +EA +    M   G  P+  T+S+  
Sbjct: 391 EAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSI-- 448

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR-IVD 431
                ++ G CK     +AF+++ +M++  +  + + Y+ L+   CK G+ HK AR +  
Sbjct: 449 -----LLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGN-HKDARKLFS 502

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           EL + G  P    ++ ++  L     + +A E
Sbjct: 503 ELFVQGLQPHVQLYTTIINGLCKEGLLDEALE 534



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 176/328 (53%), Gaps = 8/328 (2%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A   + HM      PC+     L+ A+ K     D    + ++M   G +P+ YT    +
Sbjct: 76  ALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFM 135

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           N  C+L ++     +  ++      PT+VT+T+LINGLC+     +A+ LF++M +KG +
Sbjct: 136 NCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQ 195

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P+V+TY+++++GLCK G ++ A  LL+ M     +PN+VTYSTL++ LC++  + EA++I
Sbjct: 196 PDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDI 255

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK +G+ PD   Y  +I   C   +++EA+  L+EM    I P+ +T+       N 
Sbjct: 256 FSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTF-------NV 308

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           +V   CK    + A  V  +M    +  + +TYSSL+  +    D+ ++ ++   ++  G
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG 368

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
           C P+  +++ ++      +++ +A +L 
Sbjct: 369 CKPNIFSYNILINGYCKAKRIDEAMQLF 396


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 227/491 (46%), Gaps = 58/491 (11%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S K+    V+ +++  K+ +  L  F   +      F+HD S F  M+++LV    F PA
Sbjct: 73  SPKLKPHHVVNILQTHKNTDSVLRFFFWISRR--KFFKHDMSCFVSMLNRLVRDRLFAPA 130

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
                       D    + +  CR  G V R    +   +   +FG   T  S+ T+L  
Sbjct: 131 ------------DHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGY--TLCSFTTLLIQ 176

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN--------------------- 168
           L + + + LA   Y  M   GI+P + + N +I  LCK                      
Sbjct: 177 LGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPN 236

Query: 169 -------------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
                        +  +D AF +F  M   GC P+S TY TLINGLC  G++ EA ++ +
Sbjct: 237 AFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLE 296

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM  K   PTV TYT  +  LC +    EA+ L  +M+ +G  PN+ T+++L+ GL + G
Sbjct: 297 EMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDG 356

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
               A+ L   M++    P  VTY+ L+N LC EG+ + A  I   M   G  P    Y 
Sbjct: 357 KFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYN 416

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQV 394
           +II CFC +G  Q+A    D+M+  G +PN +T+       NT++ G CK  + N A ++
Sbjct: 417 EIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITY-------NTLIYGYCKQGNLNNAMRL 469

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M+   +  D+ TY+ LI+ F + G +  +  +   ++  G  P+  T++A++   ++
Sbjct: 470 LEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFN 529

Query: 455 RRKMRQAAELL 465
             K+  A  L 
Sbjct: 530 LAKVDDALALF 540



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 222/447 (49%), Gaps = 22/447 (4%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +++ A  +FD    +   G   ++ T+S +I+ L S  +   A D+L+ + ++  + T  
Sbjct: 252 NLDLAFAMFDRMVKD---GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVY 308

Query: 87  IF----LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            +    +S+C          +A+ +  KMK+ GC P  +++  +++ L  + + ++A   
Sbjct: 309 TYTIPLVSLCDAGCSS----EAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGL 364

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           Y  M   G+ P   + N LI  LC   G  + AF IF+ M + G  P + TY  +I   C
Sbjct: 365 YHKMLADGLVPTTVTYNALINQLCV-EGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFC 423

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
            +G I +A  +F +M     SP V+TY +LI G C+  ++  AMRL E M+  G++P+ +
Sbjct: 424 LMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAW 483

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY+ L+ G  +GG    A  L   M+     PN VTY+ +++G     K+ +A+ +  +M
Sbjct: 484 TYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKM 543

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
              G  P +  Y  +IS F       EA NF  +MV  G+ PN +T++       + + G
Sbjct: 544 VESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYT-------SFIDG 596

Query: 383 LCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA--RIVDELVLDGCL 439
           LC+      AF+++  M  R+   +  TYSSLI   C++G    +    ++  L   GC 
Sbjct: 597 LCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCE 656

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLL 466
           P+  T++ ++  L    +  +A +L++
Sbjct: 657 PNVDTYTTLVKGLCGEGRCYEADQLVV 683



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 221/466 (47%), Gaps = 31/466 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G R    TF+ MI+ L    + + A+ ++  + +         + S+  G+ R H    
Sbjct: 196 SGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDL 255

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +FD+M + GC+P   +Y T++  L  E +L+ A      M + GI+P V +  + + 
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLV 315

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LC ++G    A ++  +M  RGC P+  T+  LI+GL R GK   A  L+ +M      
Sbjct: 316 SLC-DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PT VTY +LIN LC     E A  +F+ M S G  P+  TY+ ++   C  G   +AM +
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M+     PN++TY+TL+ G CK+G L  A+ +L+ MK  GLKPDA  Y ++IS F  
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHI----------------------------RI 375
            GK + A +    M+  GI+PN +T++  I                            + 
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +N ++ G  KT+  + A      M  + +  + +TY+S I   C+ G    + +I  E+ 
Sbjct: 555 YNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME 614

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAEL-LLLELMNKCVEAEVD 479
                P+  T+S+++  L    +   A    LL  L +   E  VD
Sbjct: 615 KRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVD 660



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 192/413 (46%), Gaps = 11/413 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G      T++ +I++L    +F  A  +   +       +   +  I + +  +    
Sbjct: 370 ADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQ 429

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            AM +FDKM + G  P   +Y T++    ++  L  A R    M+  G++P   +   LI
Sbjct: 430 KAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELI 489

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               +  G ++ A  +F  M   G +P+  TY  +I+G   L K+ +A  LF +M     
Sbjct: 490 SGFSR-GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGN 548

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P+  TY  +I+G  ++ S+ EA     +M  +G+ PNV TY+S +DGLC+ G +  A +
Sbjct: 549 LPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA--VEILDRMKLQGLKPDAGLYGKIISC 340
           +   M  + + PN+ TYS+L+ GLC+EG+ ++A    +L R+   G +P+   Y  ++  
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKG 668

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
            C  G+  EA   +  M   G+ P+         I+  ++ G CK      A  ++ SM 
Sbjct: 669 LCGEGRCYEADQLVVSMQKKGLQPSE-------EIYRALLIGECKNLKVESALNIFYSMD 721

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
                +    Y +LI   CK+  I ++  I   ++      DE  W+ ++  L
Sbjct: 722 TLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGL 774



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 184/420 (43%), Gaps = 23/420 (5%)

Query: 5   TMFKW--------STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLM 56
           T+FKW        ST+ T  ++++      D+ KA+VIFD        G   +  T++ +
Sbjct: 398 TIFKWMLSHGSLPSTQ-TYNEIIKCFCLMGDIQKAMVIFDKMLKA---GSSPNVITYNTL 453

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116
           I           A  LL+ +           +  +  G+ R  +   A  +F  M E G 
Sbjct: 454 IYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI 513

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
            P   +Y  ++       ++  A   +  M E G  P   + NV+I    K + ++  A 
Sbjct: 514 SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK-TNSISEAE 572

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
               +M  +G  P+  TY + I+GLCR G+   A ++F EME +   P + TY+SLI GL
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGL 632

Query: 237 CQSKSVEEA--MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           CQ    E+A    L   +   G EPNV TY++L+ GLC  G   +A +L+  M  K  +P
Sbjct: 633 CQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP 692

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           +   Y  LL G CK  K++ A+ I   M   G +     Y  +I   C     +EA    
Sbjct: 693 SEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIF 752

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413
             M+      + + W++       ++ GL K  + +   ++   M +R+ +++  TY  L
Sbjct: 753 QTMLEKHWNSDEVAWTV-------LLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVML 805



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           ++  +GCEP   +Y T++  L  E +   A +    M++ G+QP       L+   CKN 
Sbjct: 649 RLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNL 708

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             +++A  IF  M   G       Y  LI  LC+   I EA+ +F+ M  K  +   V +
Sbjct: 709 -KVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAW 767

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T L++GL +    +  ++L   M S+    N  TY  L   L    C+ +  ++ Q +
Sbjct: 768 TVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIKIPQISQQL 825



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 9/124 (7%)

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV-DSLTYSSLI 414
           +M+  GI P+ LT+       NT++  LCK    +  ++ +S   R  +  ++ TY+SLI
Sbjct: 192 KMLNSGIRPSLLTF-------NTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLI 244

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
              C+  ++  +  + D +V DGC P+  T+S ++  L    ++ +A + +L E++ K +
Sbjct: 245 LGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMD-MLEEMVQKGI 303

Query: 475 EAEV 478
           E  V
Sbjct: 304 EPTV 307


>gi|255660908|gb|ACU25623.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 481

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 229/470 (48%), Gaps = 42/470 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F HB  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSAKTSEHALQFF--RWVERSNLFEHBRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKMEELGVERTLKSYDALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P     NVLI      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRXXFNVLIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLXEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L+   C  G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYLAPTDNSIFMRLITSQCTSGHLDAAS 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKXGQYDQAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAAKAETLVRQLLKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            R +  +   Y+SL+  + K+ +   +   +D ++ +  LPD   + +VM
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKRNEPADAKAALDSMIENDHLPDSALFRSVM 480



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   ++++L Q M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   + +Y  L   + + G+   A    ++M  +G++P    +  +I  F   GK 
Sbjct: 107 EELGVERTLKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRXXFNVLIWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A  F ++M    I+P+ +T+       NT++ G  +      A + ++ M+ R+I   
Sbjct: 167 ETANRFFEDMKSREISPDVVTY-------NTMINGYYRVKKMEEAEKYFVEMKGRNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +TY++LI  +     +  + R+ +E+   G  P+  T+S ++  L +  KM +A  +L
Sbjct: 220 VVTYTTLIKGYVSVDQVDDALRLXEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSIL 278


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 231/459 (50%), Gaps = 13/459 (2%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN 64
           ++F  S  I+     Q++R      KA   F+ A+    NGF HD+ ++ +M+  L    
Sbjct: 17  SLFSLSPSISKTTFFQVLRFIASPPKAFEFFNWASR---NGFAHDSRSYFMMLDILGRNG 73

Query: 65  QFRPAEDLL---DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
               A + L   +R +     I +    ++ R YG      +A+++F  MK  G  P+  
Sbjct: 74  NLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVI 133

Query: 122 SYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           ++ ++L IL++  +  +A   +  M    G+ P   + N+LI+  CKNS  +D  F+ F+
Sbjct: 134 TFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNS-MVDEGFRFFK 192

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKACSPTVVTYTSLINGLCQ 238
           EM    C PD  TY TL++GLCR GK+  A  + K M  + K  SP VVTYT+L+ G C 
Sbjct: 193 EMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCM 252

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR-HRPNIV 297
            + ++EA+ +FEEM S+G++PN  TY++L+ GLC+     +  E+L   +  R   P+  
Sbjct: 253 KQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTC 312

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+TL+N  C  G   EA+++  +MK   ++PD+  Y  +I   C  G ++ A    D++
Sbjct: 313 TYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKL 372

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
               I       +  +  +N +   LCK    ++A +V+  +  +  + D  +Y +LI  
Sbjct: 373 SDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKG-TQDPPSYKTLIIG 431

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            CK+G      +++  ++    +PD  T+  ++     +
Sbjct: 432 HCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQK 470



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 160/336 (47%), Gaps = 18/336 (5%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA----FKIFREMPNRGCTPDSYTY 194
           AF F+      G      S  +++  L +N G ++ A    F I R         D +  
Sbjct: 43  AFEFFNWASRNGFAHDSRSYFMMLDILGRN-GNLNIARNFLFSIERRSNGSVKIEDRFC- 100

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM-R 253
            TL+      G   EA +LF  M++   SP+V+T+ SL+  L +      A  +F+EM  
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCG 160

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           + GV P+ +T++ L+ G CK     +     + M      P++VTY+TL++GLC+ GK++
Sbjct: 161 TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVR 220

Query: 314 EAVEILDRM--KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
            A  ++  M  K++ L PD   Y  ++  +C   +  EA    +EMV  G+ PN +T+  
Sbjct: 221 IAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITY-- 278

Query: 372 HIRIHNTVVQGLCKTDPNRAFQVYL--SMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                NT+++GLC+       +  L  ++  R    D+ TY++L+   C  G+  ++ ++
Sbjct: 279 -----NTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKM 333

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             ++      PD  T+S ++  L  R    +A +L 
Sbjct: 334 FKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLF 369



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 171/387 (44%), Gaps = 24/387 (6%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           ++++++ALV+F+   +    G + ++ T++ +I  L    +F   +++L      +  + 
Sbjct: 253 KQEIDEALVVFEEMVSR---GLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVP 309

Query: 85  ED-IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           +   + ++           +A+++F KMKE   +P   +Y  ++  L +    + A + +
Sbjct: 310 DTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLF 369

Query: 144 RHM-------REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
             +       R+ G  P VA+ N +   LCKN  T  A  ++FR++  +G T D  +Y T
Sbjct: 370 DKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAE-RVFRQLMKKG-TQDPPSYKT 427

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           LI G C+ G      +L   M  +   P   TY  LING  Q      A +  E M    
Sbjct: 428 LIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSS 487

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
             P    + S++  L K   + ++   + +MI ++ R NI   +  +  L   G   +A 
Sbjct: 488 YLPKTSVFHSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAF 547

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           +I++ +   G   D     ++I   C  GK  +A   L   +  G        ++ I + 
Sbjct: 548 QIVELLYDNGYMVDM---EELIGFICQNGKLLDAQKMLSFCLEKG-------HNVDINVC 597

Query: 377 NTVVQGLCKTD-PNRAFQVYLSMRNRS 402
           N V++GLCK   P  AF +Y  +  +S
Sbjct: 598 NVVIEGLCKMKRPLEAFGLYYMLVEKS 624



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 123/317 (38%), Gaps = 49/317 (15%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED-----------IFLSICRGYGR 97
           D++T+S++I  L     F  AE L D+++ E   + +D           IF  +C+  G+
Sbjct: 345 DSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKN-GK 403

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
            H+   A RVF ++ + G +  P SY T++    +E   +  ++    M      P   +
Sbjct: 404 THK---AERVFRQLMKKGTQ-DPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFET 459

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL---- 213
             +LI    +  G    A+K    M      P +  + ++++ L +     E+       
Sbjct: 460 YVLLINGFLQ-KGEPILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFARESASFVVLM 518

Query: 214 ----------------------------FKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
                                       F+ +E    +  +V    LI  +CQ+  + +A
Sbjct: 519 IDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELLYDNGYMVDMEELIGFICQNGKLLDA 578

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            ++      KG   ++   + +++GLCK     +A  L  M++ K +   +     L   
Sbjct: 579 QKMLSFCLEKGHNVDINVCNVVIEGLCKMKRPLEAFGLYYMLVEKSNHQQLSCLEGLRTA 638

Query: 306 LCKEGKLQEAVEILDRM 322
           L   G+ +EA  +  RM
Sbjct: 639 LEAGGRSEEAKFVSKRM 655


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 205/383 (53%), Gaps = 12/383 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V  KM + G EP   +  ++L      N++  A      M E+G QP   + N LI 
Sbjct: 135 ALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIH 194

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L +++   +A   + R M  +GC PD  TYG ++NGLC+ G I  A  L K+ME     
Sbjct: 195 GLFRHNRASEAVALVDR-MVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VV Y ++I+ LC  K+V +A+ LF EM +KG+ PNV TY+SL+  LC  G  S A  L
Sbjct: 254 PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI ++  PN+VT+S L++   KEGKL EA ++ D M  + + PD   Y  +I+ FC 
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 373

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
             +  EA +  + M+     PN +T+       NT+++G CK    +   +++  M  R 
Sbjct: 374 HDRLDEAKHMFELMISKDCFPNVVTY-------NTLIKGFCKAKRVDEGMELFREMSQRG 426

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  +++TY++LI  F +  +   +  +  ++V DG LPD  T+S ++  L +  K+  A 
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA- 485

Query: 463 ELLLLELMNKCVEAEVDIQNQDV 485
            L++ E + +  + E DI   ++
Sbjct: 486 -LVVFEYLQRS-KMEPDIYTYNI 506



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 228/458 (49%), Gaps = 32/458 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  T + +++     N+   A  L+ ++ +         F ++  G  R +R  +A
Sbjct: 146 GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEA 205

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + D+M   GC+P   +Y  V+  L +   + LA    + M +  I+P V   N +I A
Sbjct: 206 VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N   ++ A  +F EM N+G  P+  TY +LI  LC  G+  +A  L  +M  +  +P
Sbjct: 266 LC-NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 324

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVT+++LI+   +   + EA +L++EM  + ++P++FTYSSL++G C      +A  + 
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 384

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           ++MISK   PN+VTY+TL+ G CK  ++ E +E+   M  +GL  +   Y  +I  F   
Sbjct: 385 ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 444

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRIH 376
            +   A     +MV  G+ P+ +T+S+                             I  +
Sbjct: 445 RECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTY 504

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N +++G+CK       + ++ S+  + +  + +TY+++++ FC+KG   ++  +  E+  
Sbjct: 505 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKE 564

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           +G LPD GT++ ++ A    R   +AA   L+  M  C
Sbjct: 565 EGPLPDSGTYNTLIRA--HLRDGDKAASAELIREMRSC 600



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/413 (30%), Positives = 203/413 (49%), Gaps = 9/413 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+ ++++ L        A  LL ++ + K +    I+ +I           DA
Sbjct: 216 GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDA 275

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M   G  P   +Y +++  L    +   A R    M E  I P V + + LI A
Sbjct: 276 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 335

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G +  A K++ EM  R   PD +TY +LING C   ++ EAK +F+ M +K C P
Sbjct: 336 FVK-EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 394

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +LI G C++K V+E M LF EM  +G+  N  TY++L+ G  +      A  + 
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+S    P+I+TYS LL+GLC  GK++ A+ + + ++   ++PD   Y  +I   C  
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKA 514

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSI 403
           GK ++  +    + L G+ PN +T++       T++ G C+      A  ++  M+    
Sbjct: 515 GKVEDGWDLFCSLSLKGVKPNVVTYT-------TMMSGFCRKGLKEEADALFREMKEEGP 567

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
             DS TY++LI    + GD   SA ++ E+     + D  T   V   L D R
Sbjct: 568 LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHDGR 620



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 176/346 (50%), Gaps = 17/346 (4%)

Query: 134 NQLKL--AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           N LKL  A   +  M +    P +   + L+ A+ K +   D    +  +M N G + + 
Sbjct: 58  NDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMN-KFDLVISLGEQMQNLGISHNL 116

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           YTY  LIN  CR  ++  A  +  +M      P +VT  SL+NG C    + +A+ L  +
Sbjct: 117 YTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQ 176

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M   G +P+ FT+++L+ GL +   +S+A+ L+  M+ K  +P++VTY  ++NGLCK G 
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+ +L +M+   ++P   +Y  II   C+     +A N   EM   GI PN +T+  
Sbjct: 237 IDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY-- 294

Query: 372 HIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                N++++ LC     +D +R       M  R I+ + +T+S+LI  F K+G + ++ 
Sbjct: 295 -----NSLIRCLCNYGRWSDASRLLS---DMIERKINPNVVTFSALIDAFVKEGKLVEAE 346

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++ DE++     PD  T+S+++       ++ +A  +  L +   C
Sbjct: 347 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 392



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 83/189 (43%), Gaps = 4/189 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++      ++ + A ++F    ++   G   D  T+S+++  L +  +   A  +
Sbjct: 432 VTYTTLIHGFFQARECDNAQIVFKQMVSD---GVLPDIMTYSILLDGLCNNGKVETALVV 488

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            + + + K +     +  +  G  +  +  D   +F  +   G +P   +Y T+++    
Sbjct: 489 FEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 548

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +   + A   +R M+E G  P   + N LI+A  ++ G   A+ ++ REM +     D+ 
Sbjct: 549 KGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRD-GDKAASAELIREMRSCRFVGDAS 607

Query: 193 TYGTLINGL 201
           T G + N L
Sbjct: 608 TIGLVTNML 616


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/464 (29%), Positives = 226/464 (48%), Gaps = 44/464 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRP 101
           NG + D  T+   +  +        A +LL R  +E   I  +  I+ +I  G  +  R 
Sbjct: 211 NGLQPDQITYGTFVDGMCKMGDTVSALNLL-RKMEEISHIKPNVVIYSAIIDGLCKDGRH 269

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            D+  +F +M++ G  P   +Y  ++       +   A R  + M E  I P V + N L
Sbjct: 270 SDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNAL 329

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I A  K     +AA +++ EM  RG  P++ TY ++I+G C+  ++  A+++F  M TK 
Sbjct: 330 INAFVKEGKFFEAA-ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKG 388

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP V T+T+LI+G C +K +++ M L  EM  +G+  N  TY++L+ G C  G  + A+
Sbjct: 389 CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAAL 448

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-----------LQGLKPD 330
           +L Q MIS    P+IVT +TLL+GLC  GKL++A+E+   M+             G++PD
Sbjct: 449 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPD 508

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR---------------- 374
              Y  +I    + GK+ EA    +EM   GI P+ +T+S  I                 
Sbjct: 509 VLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFV 568

Query: 375 ------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
                         NT++ G CK    +   +++  M  R I  D++ Y +LI  F K G
Sbjct: 569 SMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVG 628

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I+ +  I  E++  G  PD  T   ++T  W + ++ +A  +L
Sbjct: 629 NINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAML 672



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 216/435 (49%), Gaps = 25/435 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ ++  L   ++   A DL  ++    C      F ++  G  R  R ++A
Sbjct: 146 GLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEA 201

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +P   +Y T +  + +      A    R M EI  I+P V   + +I 
Sbjct: 202 VALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIID 261

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK+ G    +  +F EM ++G  P+  TY  +I G C  G+   A+ L +EM  +  S
Sbjct: 262 GLCKD-GRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS 320

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY +LIN   +     EA  L++EM  +G+ PN  TY+S++DG CK      A ++
Sbjct: 321 PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 380

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M +K   P++ T++TL++G C   ++ + +E+L  M  +GL  +   Y  +I  FC 
Sbjct: 381 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 440

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
           +G    A +   +M+  G+ P+ +T        NT++ GLC     + A +++ +M+   
Sbjct: 441 VGDLNAALDLSQQMISSGVCPDIVTC-------NTLLDGLCDNGKLKDALEMFKAMQKSK 493

Query: 403 ISVDS-----------LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           + +D+           LTY+ LI     +G   ++  + +E+   G +PD  T+S+++  
Sbjct: 494 MDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 553

Query: 452 LWDRRKMRQAAELLL 466
           L  + ++ +A ++ +
Sbjct: 554 LCKQSRLDEATQMFV 568



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 188/401 (46%), Gaps = 39/401 (9%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           R+ RP   + ++ KM+         S+  ++      ++L  A   +  + ++G+ P V 
Sbjct: 93  RMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVV 152

Query: 157 SLNVLIKALCKN------------------------------SGTMDAAFKIFREMPNRG 186
           +   L+  LC +                               G +  A  +   M   G
Sbjct: 153 TFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENG 212

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEA 245
             PD  TYGT ++G+C++G    A  L ++M E     P VV Y+++I+GLC+     ++
Sbjct: 213 LQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDS 272

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF EM+ KG+ PN+ TY+ ++ G C  G  S A  LLQ M+ ++  PN+VTY+ L+N 
Sbjct: 273 HNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINA 332

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
             KEGK  EA E+ D M  +G+ P+   Y  +I  FC   +   A +    M   G +P+
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392

Query: 366 RLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
             T++       T++ G C     +   ++   M  R +  +++TY++LI  FC  GD++
Sbjct: 393 VFTFT-------TLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLN 445

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  +  +++  G  PD  T + ++  L D  K++ A E+ 
Sbjct: 446 AALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 486



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 168/323 (52%), Gaps = 14/323 (4%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V   N L+ A+ +     D    ++++M  +    D Y++  LI   C   K+  A  
Sbjct: 79  PSVIDFNKLMGAVVRMERP-DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALS 137

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            F ++      P VVT+T+L++GLC    V EA+ LF ++      P+V T+++LM+GLC
Sbjct: 138 TFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLC 193

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-LQGLKPDA 331
           + G   +A+ LL  M+    +P+ +TY T ++G+CK G    A+ +L +M+ +  +KP+ 
Sbjct: 194 REGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNV 253

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRA 391
            +Y  II   C  G++ ++ N   EM   GI PN +T+       N ++ G C +    A
Sbjct: 254 VIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTY-------NCMIGGFCISGRWSA 306

Query: 392 FQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
            Q  L  M  R IS + +TY++LI  F K+G   ++A + DE++  G +P+  T+++++ 
Sbjct: 307 AQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366

Query: 451 ALWDRRKMRQAAELLLLELMNKC 473
               + ++  A ++  L     C
Sbjct: 367 GFCKQDRLDAAEDMFYLMATKGC 389



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 12/317 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MI      ++   AED+   +  + C      F ++  GY    R  D M +  +M
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G      +Y T++        L  A    + M   G+ P + + N L+  LC N G 
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN-GK 478

Query: 172 MDAAFKIFREM-----------PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +  A ++F+ M           P  G  PD  TY  LI GL   GK  EA+EL++EM  +
Sbjct: 479 LKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR 538

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  +TY+S+I+GLC+   ++EA ++F  M SK   PNV T+++L++G CK G     
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +EL   M  +    + + Y TL+ G  K G +  A++I   M   G+ PD      +++ 
Sbjct: 599 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 658

Query: 341 FCDIGKYQEAANFLDEM 357
           F    + + A   L+++
Sbjct: 659 FWSKEELERAVAMLEDL 675



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 156/295 (52%), Gaps = 13/295 (4%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L+  + R+ +      L+++ME K     + ++T 
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI   C    +  A+  F ++   G+ P+V T+++L+ GLC     S+A++L   +    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQIC--- 178

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RP+++T++TL+NGLC+EG++ EAV +LDRM   GL+PD   YG  +   C +G    A 
Sbjct: 179 -RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLT 409
           N L +M  +  I PN       + I++ ++ GLCK   +  +  +++ M+++ I  + +T
Sbjct: 238 NLLRKMEEISHIKPN-------VVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVT 290

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+ +I  FC  G    + R++ E++     P+  T++A++ A     K  +AAEL
Sbjct: 291 YNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 150/291 (51%), Gaps = 12/291 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ +I     A +     +LL  + +         + ++  G+  V     A
Sbjct: 388 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAA 447

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GIQP 153
           + +  +M   G  P   +  T+L  L +  +LK A   ++ M++            G++P
Sbjct: 448 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 507

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V + N+LI  L  N G    A +++ EMP+RG  PD+ TY ++I+GLC+  ++ EA ++
Sbjct: 508 DVLTYNILICGLI-NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQM 566

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F  M +K+ SP VVT+ +LING C++  V++ + LF EM  +G+  +   Y +L+ G  K
Sbjct: 567 FVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRK 626

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            G  + A+++ Q MIS    P+ +T   +L G   + +L+ AV +L+ +++
Sbjct: 627 VGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQM 677


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/464 (29%), Positives = 226/464 (48%), Gaps = 44/464 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRP 101
           NG + D  T+   +  +        A +LL R  +E   I  +  I+ +I  G  +  R 
Sbjct: 211 NGLQPDQITYGTFVDGMCKMGDTVSALNLL-RKMEEISHIKPNVVIYSAIIDGLCKDGRH 269

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            D+  +F +M++ G  P   +Y  ++       +   A R  + M E  I P V + N L
Sbjct: 270 SDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNAL 329

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I A  K     +AA +++ EM  RG  P++ TY ++I+G C+  ++  A+++F  M TK 
Sbjct: 330 INAFVKEGKFFEAA-ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKG 388

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP V T+T+LI+G C +K +++ M L  EM  +G+  N  TY++L+ G C  G  + A+
Sbjct: 389 CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAAL 448

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-----------LQGLKPD 330
           +L Q MIS    P+IVT +TLL+GLC  GKL++A+E+   M+             G++PD
Sbjct: 449 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPD 508

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR---------------- 374
              Y  +I    + GK+ EA    +EM   GI P+ +T+S  I                 
Sbjct: 509 VLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFV 568

Query: 375 ------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
                         NT++ G CK    +   +++  M  R I  D++ Y +LI  F K G
Sbjct: 569 SMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVG 628

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I+ +  I  E++  G  PD  T   ++T  W + ++ +A  +L
Sbjct: 629 NINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAML 672



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 216/435 (49%), Gaps = 25/435 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ ++  L   ++   A DL  ++    C      F ++  G  R  R ++A
Sbjct: 146 GLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEA 201

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +P   +Y T +  + +      A    R M EI  I+P V   + +I 
Sbjct: 202 VALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIID 261

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK+ G    +  +F EM ++G  P+  TY  +I G C  G+   A+ L +EM  +  S
Sbjct: 262 GLCKD-GRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS 320

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY +LIN   +     EA  L++EM  +G+ PN  TY+S++DG CK      A ++
Sbjct: 321 PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 380

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M +K   P++ T++TL++G C   ++ + +E+L  M  +GL  +   Y  +I  FC 
Sbjct: 381 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 440

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
           +G    A +   +M+  G+ P+ +T        NT++ GLC     + A +++ +M+   
Sbjct: 441 VGDLNAALDLSQQMISSGVCPDIVTC-------NTLLDGLCDNGKLKDALEMFKAMQKSK 493

Query: 403 ISVDS-----------LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           + +D+           LTY+ LI     +G   ++  + +E+   G +PD  T+S+++  
Sbjct: 494 MDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 553

Query: 452 LWDRRKMRQAAELLL 466
           L  + ++ +A ++ +
Sbjct: 554 LCKQSRLDEATQMFV 568



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 188/401 (46%), Gaps = 39/401 (9%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           R+ RP   + ++ KM+         S+  ++      ++L  A   +  + ++G+ P V 
Sbjct: 93  RMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVV 152

Query: 157 SLNVLIKALCKN------------------------------SGTMDAAFKIFREMPNRG 186
           +   L+  LC +                               G +  A  +   M   G
Sbjct: 153 TFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENG 212

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEA 245
             PD  TYGT ++G+C++G    A  L ++M E     P VV Y+++I+GLC+     ++
Sbjct: 213 LQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDS 272

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF EM+ KG+ PN+ TY+ ++ G C  G  S A  LLQ M+ ++  PN+VTY+ L+N 
Sbjct: 273 HNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINA 332

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
             KEGK  EA E+ D M  +G+ P+   Y  +I  FC   +   A +    M   G +P+
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392

Query: 366 RLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
             T++       T++ G C     +   ++   M  R +  +++TY++LI  FC  GD++
Sbjct: 393 VFTFT-------TLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLN 445

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  +  +++  G  PD  T + ++  L D  K++ A E+ 
Sbjct: 446 AALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 486



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 168/323 (52%), Gaps = 14/323 (4%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V   N L+ A+ +     D    ++++M  +    D Y++  LI   C   K+  A  
Sbjct: 79  PSVIDFNKLMGAVVRMERP-DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALS 137

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            F ++      P VVT+T+L++GLC    V EA+ LF ++      P+V T+++LM+GLC
Sbjct: 138 TFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLC 193

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-LQGLKPDA 331
           + G   +A+ LL  M+    +P+ +TY T ++G+CK G    A+ +L +M+ +  +KP+ 
Sbjct: 194 REGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNV 253

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRA 391
            +Y  II   C  G++ ++ N   EM   GI PN +T+       N ++ G C +    A
Sbjct: 254 VIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTY-------NCMIGGFCISGRWSA 306

Query: 392 FQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
            Q  L  M  R IS + +TY++LI  F K+G   ++A + DE++  G +P+  T+++++ 
Sbjct: 307 AQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366

Query: 451 ALWDRRKMRQAAELLLLELMNKC 473
               + ++  A ++  L     C
Sbjct: 367 GFCKQDRLDAAEDMFYLMATKGC 389



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 12/317 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MI      ++   AED+   +  + C      F ++  GY    R  D M +  +M
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G      +Y T++        L  A    + M   G+ P + + N L+  LC N G 
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN-GK 478

Query: 172 MDAAFKIFREM-----------PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +  A ++F+ M           P  G  PD  TY  LI GL   GK  EA+EL++EM  +
Sbjct: 479 LKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR 538

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  +TY+S+I+GLC+   ++EA ++F  M SK   PNV T+++L++G CK G     
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +EL   M  +    + + Y TL+ G  K G +  A++I   M   G+ PD      +++ 
Sbjct: 599 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 658

Query: 341 FCDIGKYQEAANFLDEM 357
           F    + + A   L+++
Sbjct: 659 FWSKEELERAVAMLEDL 675



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 156/295 (52%), Gaps = 13/295 (4%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L+  + R+ +      L+++ME K     + ++T 
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI   C    +  A+  F ++   G+ P+V T+++L+ GLC     S+A++L   +    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQIC--- 178

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RP+++T++TL+NGLC+EG++ EAV +LDRM   GL+PD   YG  +   C +G    A 
Sbjct: 179 -RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLT 409
           N L +M  +  I PN       + I++ ++ GLCK   +  +  +++ M+++ I  + +T
Sbjct: 238 NLLRKMEEISHIKPN-------VVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVT 290

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+ +I  FC  G    + R++ E++     P+  T++A++ A     K  +AAEL
Sbjct: 291 YNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 149/290 (51%), Gaps = 12/290 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ +I     A +     +LL  + +         + ++  G+  V     A
Sbjct: 388 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAA 447

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GIQP 153
           + +  +M   G  P   +  T+L  L +  +LK A   ++ M++            G++P
Sbjct: 448 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 507

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V + N+LI  L  N G    A +++ EMP+RG  PD+ TY ++I+GLC+  ++ EA ++
Sbjct: 508 DVLTYNILICGLI-NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQM 566

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F  M +K+ SP VVT+ +LING C++  V++ + LF EM  +G+  +   Y +L+ G  K
Sbjct: 567 FVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRK 626

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            G  + A+++ Q MIS    P+ +T   +L G   + +L+ AV +L+ ++
Sbjct: 627 VGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676


>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 484

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 236/476 (49%), Gaps = 46/476 (9%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP---NIVTYSTLLNGLCKEGKLQE 314
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P   +I+    L++  CK G L  
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIIM--RLISSHCKSGNLDA 309

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+ 
Sbjct: 310 AADVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIIL-RPQSTLHLE 368

Query: 375 --IHNTVVQGLCKT-----------------------------------DPNRAFQVYLS 397
              +N++++ LC                                      P+ AF++   
Sbjct: 369 PSAYNSMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKI 428

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           M  R +  +   Y+ L+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 429 MLRRKVDSEKSAYNLLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+     LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIIMRLISSHCKSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGLLIENFCKAGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 481

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 231/470 (49%), Gaps = 42/470 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++   + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETXNRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC +G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKVGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N  ++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPXIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGXSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSXLFRSVM 480



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G         + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETXNRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKVGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 484

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 231/474 (48%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRFM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P     NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHXFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVITYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYMAPTDNSIFXRLISSQCKTGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G++ +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDKAVKLLDKLIEKDIIL-RPQSTLHMEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQTAKAEALVRQLLKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +D ++ +  LPD   + +V  +L+
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVXESLF 484



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 114/239 (47%), Gaps = 8/239 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   ++++L Q M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y  L   + + G+   A    ++M  +G++P    +  +I  F   GK 
Sbjct: 107 EELGVERTIKSYDALFKVILRRGRFMMAKRYFNKMLSEGIEPTRHXFNVMIWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A  F ++M    I+P+ +T+       NT++ G  +    + A + ++ M+ R+I   
Sbjct: 167 ETANRFFEDMKSREISPDVITY-------NTMINGYYRVKKMDEAEKYFVEMKGRNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +TY++LI  +     +  + R+V+E+   G  P+  T+S ++  L +  KM +A  +L
Sbjct: 220 VVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSIL 278


>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 484

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 232/474 (48%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K    AL  F     E +N F H+  T   +I  L  A +   A  +L  + 
Sbjct: 15  VYNVLHGAKTSEHALQFF--RWVERSNLFEHNRDTHLKIIEILGRALKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NVLI      SG +D A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVLIWGFFL-SGKVDTANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVV+YT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGCYRVKKMDEAEKYFVEMKGRNIEPTVVSYTTLIKGYVSVDQVDDALRLVEEMKGYGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC  G  S+A  +L+ M+ K   P +   +  L++  C+ G L  A 
Sbjct: 252 KPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYIAPKDNSIFMRLISSQCEAGNLGAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G++ +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDKAVKLLDKLIEKDIIL-RPQSTLHMEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQTAKAEALVRQLLKLGVQDSTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +  ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKNEPADAKAALGSMIENDHLPDSSLFRSVMESLF 484



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 120/248 (48%), Gaps = 9/248 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   ++++L Q M
Sbjct: 47  THLKIIEILGRALKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y  L   + + G+   A    ++M  +G++P    +  +I  F   GK 
Sbjct: 107 EELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
             A  F ++M    I+P+ +T+       NT++ G  +    + A + ++ M+ R+I   
Sbjct: 167 DTANRFFEDMKSREISPDVVTY-------NTMINGCYRVKKMDEAEKYFVEMKGRNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            ++Y++LI  +     +  + R+V+E+   G  P+  T+S ++  L D  KM + A+ +L
Sbjct: 220 VVSYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCDAGKMSE-AQSIL 278

Query: 467 LELMNKCV 474
            E+++K +
Sbjct: 279 KEMVDKYI 286


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 228/449 (50%), Gaps = 17/449 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H+  + +++I+ L   N    A  +L ++ K     T   F ++  G     +  +A
Sbjct: 118 GVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEA 177

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F++M   G EP   SY T++  L +     +A   ++ M + G +P V + N +I +
Sbjct: 178 VELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDS 237

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+    DA  +   EM +RG  P+ +TY  +++G C LG++ EA  LFKEM  +   P
Sbjct: 238 LCKDRLVNDA-MEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMP 296

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT T L++GLC+   V EA  +FE M  KGVEPN+ TY++LMDG C     ++A ++ 
Sbjct: 297 DTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVF 356

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           ++MI +   P + +Y+ L+NG CK  ++ EA  +L  M  + L PD   Y  ++   C  
Sbjct: 357 EIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQF 416

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+ +EA N   EM   G+ PN +T+S+       ++ G CK    + A ++  SM+ + +
Sbjct: 417 GRPKEALNIFKEMCSYGLLPNLVTYSI-------LLDGFCKHGHLDEALKLLKSMQEKKL 469

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             + + ++ LI      G +  +  +  +L  DG  P   T++ ++  L       +A +
Sbjct: 470 EPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYD 529

Query: 464 LLL-LE----LMNKC---VEAEVDIQNQD 484
           L   +E    L N C   V  +  +QNQD
Sbjct: 530 LFRKMEDDGFLPNSCSYNVMIQGFLQNQD 558



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 189/398 (47%), Gaps = 42/398 (10%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F +M      P+   +   L    ++ Q          M   G+   V SLNVLI
Sbjct: 71  DALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLI 130

Query: 163 KALCK----------------------------------NSGTMDAAFKIFREMPNRGCT 188
             LC+                                  N G +  A ++F EM  RG  
Sbjct: 131 NCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHE 190

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  +Y T+INGLC+ G    A ++FK+ME   C P VVTY ++I+ LC+ + V +AM  
Sbjct: 191 PNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEF 250

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             EM  +G+ PNVFTY+ ++ G C  G  ++A  L + M+ +   P+ VT + L++GLCK
Sbjct: 251 LSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCK 310

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EG + EA  + + M  +G++P+   Y  ++  +C      EA    + M+  G  P    
Sbjct: 311 EGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPG--- 367

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
               +  +N ++ G CK+   + A  +   M +++++ D++TYS+L+   C+ G   ++ 
Sbjct: 368 ----VHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEAL 423

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            I  E+   G LP+  T+S ++        + +A +LL
Sbjct: 424 NIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLL 461



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 207/426 (48%), Gaps = 44/426 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G     STF+ +I+ L +  + + A +L + + +   +     + +I  G  +      A
Sbjct: 153 GIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMA 212

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + VF KM++ GC+P   +Y T++  L ++  +  A  F   M + GI P V + N ++  
Sbjct: 213 VDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHG 272

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA--- 221
            C   G ++ A ++F+EM  R   PD+ T   L++GLC+ G + EA+ +F+ M  K    
Sbjct: 273 FCI-LGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEP 331

Query: 222 --------------------------------CSPTVVTYTSLINGLCQSKSVEEAMRLF 249
                                           C+P V +Y  LING C+S+ ++EA  L 
Sbjct: 332 NISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLL 391

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            EM  K + P+  TYS+LM GLC+ G   +A+ + + M S    PN+VTYS LL+G CK 
Sbjct: 392 AEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKH 451

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G L EA+++L  M+ + L+P+   +  +I      GK + A     ++   GI P     
Sbjct: 452 GHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPT---- 507

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
              IR +  +++GL K    + A+ ++  M +     +S +Y+ +I  F +  D   + R
Sbjct: 508 ---IRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIR 564

Query: 429 IVDELV 434
           ++DE+V
Sbjct: 565 LIDEMV 570



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 141/269 (52%), Gaps = 1/269 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  VF+ M E G EP   +Y  ++     +  +  A + +  M   G  P V S N+LI
Sbjct: 316 EARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILI 375

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK S  MD A  +  EM ++   PD+ TY TL+ GLC+ G+  EA  +FKEM +   
Sbjct: 376 NGFCK-SRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGL 434

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VTY+ L++G C+   ++EA++L + M+ K +EPN+  ++ L++G+   G    A E
Sbjct: 435 LPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKE 494

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   + +   RP I TY+ ++ GL KEG   EA ++  +M+  G  P++  Y  +I  F 
Sbjct: 495 LFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFL 554

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSL 371
                  A   +DEMV    + N  T+ +
Sbjct: 555 QNQDSSTAIRLIDEMVGKRFSANLSTFQM 583



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 159/341 (46%), Gaps = 14/341 (4%)

Query: 139 AFRFYRHMREIGIQPCV--ASLNVLIKALCKNSGT---MDAAFKIFREMPNRGCTPDSYT 193
           +F F+ H   I    C    SL         N+ T   +D A   F  M      P    
Sbjct: 32  SFLFFNH-HHISTSACTRKPSLPQNNGGFVSNNSTNISIDDALASFYRMVRMNPRPSVAE 90

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           +G  +    +  +      L  +M+    +  V +   LIN LC+   V+ A+ +  +M 
Sbjct: 91  FGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMF 150

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             G+ P   T+++L++GLC  G   +A+EL   M+ + H PN+++Y+T++NGLCK G   
Sbjct: 151 KLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTS 210

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            AV++  +M+  G KPD   Y  II   C      +A  FL EM+  GI PN  T+    
Sbjct: 211 MAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTY---- 266

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              N +V G C     N A +++  M  R +  D++T + L+   CK+G + ++  + + 
Sbjct: 267 ---NCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFET 323

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           +   G  P+  T++A+M     +R M +A ++  + +   C
Sbjct: 324 MTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGC 364



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 136/280 (48%), Gaps = 4/280 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  V++A ++F++ T +   G   + ST++ ++           A+ + + + ++ C   
Sbjct: 311 EGMVSEARLVFETMTEK---GVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPG 367

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              +  +  G+ +  R  +A  +  +M      P   +Y T++  L +  + K A   ++
Sbjct: 368 VHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFK 427

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   G+ P + + ++L+   CK+ G +D A K+ + M  +   P+   +  LI G+   
Sbjct: 428 EMCSYGLLPNLVTYSILLDGFCKH-GHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIA 486

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           GK+  AKELF ++      PT+ TYT +I GL +    +EA  LF +M   G  PN  +Y
Sbjct: 487 GKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSY 546

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           + ++ G  +   SS A+ L+  M+ KR   N+ T+  LL+
Sbjct: 547 NVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLD 586



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 21/216 (9%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQF-RPAEDLLDRVNKEKCD-------ITEDIFL-SIC 92
           Y      D  T+S ++  L    QF RP E L   + KE C        +T  I L   C
Sbjct: 395 YHKALNPDTVTYSTLMQGLC---QFGRPKEAL--NIFKEMCSYGLLPNLVTYSILLDGFC 449

Query: 93  RGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151
           +     H  LD A+++   M+E   EP    +  ++  +    +L++A   +  +   GI
Sbjct: 450 K-----HGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGI 504

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P + +  V+IK L K  G  D A+ +FR+M + G  P+S +Y  +I G  +      A 
Sbjct: 505 RPTIRTYTVMIKGLLK-EGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAI 563

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            L  EM  K  S  + T+  L++   Q + + + MR
Sbjct: 564 RLIDEMVGKRFSANLSTFQMLLDLESQDEIISQFMR 599


>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 484

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 225/451 (49%), Gaps = 40/451 (8%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           E +N F H+  T   +I  L  A++   A  +L  + K+  +  ED+++ +   YG+   
Sbjct: 36  ERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGI 95

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +++++F KM+E   E T KSY  +  +++   +  +A R++  M   GI+P   + NV
Sbjct: 96  VQESVKMFQKMEELXVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNV 155

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I      SG ++ A + F +M +R  +PD  TY T+ING  R+ K+ EA++ F EM+ +
Sbjct: 156 MIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGR 214

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              PTVVTYT+LI G      V++A+RL ZEM+  G++PN  TYS+L+ GLC     S+A
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDDALRLVZEMKGXGIKPNAITYSTLLPGLCNAEKMSEA 274

Query: 281 MELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
             JL+ M+ K   P +   +  L+   CK G L  A ++L  M    +  +AG  G +I 
Sbjct: 275 RVJLKEMMDKYLAPTDNSIFMRLIXSHCKSGNLDAAADVLKAMIRLSVPTEAGHXGXLIE 334

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--IHNTVVQGLCKT----------- 386
            FC +G+Y +A   LD+++   I   R   +LH+    +N +++ LC             
Sbjct: 335 NFCKVGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVR 393

Query: 387 ------------------------DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
                                    P+ AF++   M  R +  +   Y+SL+  + KK +
Sbjct: 394 QLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKXAYNSLVQSYLKKNE 453

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
              +   +D ++ +  LPD   + +VM +L+
Sbjct: 454 PXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 150/311 (48%), Gaps = 9/311 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           V  +L   N  + A +F+R +    +       ++ I  +   +  ++ A  I  +MP +
Sbjct: 15  VYNVLHSSNTXEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKK 74

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G   D   +  +I+   + G + E+ ++F++ME      T+ +Y +L   + +      A
Sbjct: 75  GLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELXVERTIKSYNALFKVILRRGRYMMA 134

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            R F +M S+G+EP   T++ ++ G    G    A    + M S+   P++VTY+T++NG
Sbjct: 135 KRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMING 194

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
             +  K++EA +    MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN
Sbjct: 195 YYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVZEMKGXGIKPN 254

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDI 423
            +T+S       T++ GLC  +     +V L  M ++ ++  D+  +  LI   CK G++
Sbjct: 255 AITYS-------TLLPGLCNAEKMSEARVJLKEMMDKYLAPTDNSIFMRLIXSHCKSGNL 307

Query: 424 HKSARIVDELV 434
             +A ++  ++
Sbjct: 308 DAAADVLKAMI 318



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 120/246 (48%), Gaps = 9/246 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG+E +   +  ++D   K G   +++++ Q M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y+ L   + + G+   A    ++M  +G++P    +  +I  F   GK 
Sbjct: 107 EELXVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A  F ++M    I+P+ +T+       NT++ G  +      A + ++ M+ R+I   
Sbjct: 167 ETANRFFEDMKSREISPDVVTY-------NTMINGYYRVKKMEEAEKYFVEMKGRNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY++LI  +     +  + R+V+E+   G  P+  T+S ++  L +  KM + A +JL
Sbjct: 220 VVTYTTLIKGYVSVDQVDDALRLVZEMKGXGIKPNAITYSTLLPGLCNAEKMSE-ARVJL 278

Query: 467 LELMNK 472
            E+M+K
Sbjct: 279 KEMMDK 284


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 218/424 (51%), Gaps = 16/424 (3%)

Query: 47  RH--DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           RH  DN+T ++++  L   ++   A +L++ +           + ++  G  +  R  +A
Sbjct: 69  RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEA 128

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + + M E GC PT  +Y +++       ++  A  F   M   G  P + +   LI  
Sbjct: 129 VALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGG 188

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK S  +    ++  E+  RG TPD  TY T+I+GLC+ G++ +A ++F+EM   +C+P
Sbjct: 189 FCK-SRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAP 244

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T +TY SLI G C++  ++EA+RL  +M      P+V TY++LM   CK G    A EL 
Sbjct: 245 TAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELF 304

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           Q M++ +  P++VT+++L++GLC EG++++A+E+L+ +  +G  P    Y  ++  +C  
Sbjct: 305 QQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKA 364

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC---KTDPNRAFQVYLSMRNR 401
            + ++A   + +    G  PN +T+       N +V G C   +TD    +   L+    
Sbjct: 365 NQVRKAEELVADFRSRGFVPNTVTY-------NILVAGCCRAGRTDQALQYLDQLNSEGG 417

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
                   Y+ ++   C+ G    + +  +E++  G +P   T++ V+ AL    + +QA
Sbjct: 418 PCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQA 477

Query: 462 AELL 465
            ELL
Sbjct: 478 HELL 481



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 202/373 (54%), Gaps = 13/373 (3%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G  R  R   A+ V+ +M +    P   +Y  ++  L +  +L+ A +  + M      P
Sbjct: 14  GLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVP 72

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
              +L V++++LC     +D A ++  EM +RG   ++ TY  L++GLC+  ++ EA  L
Sbjct: 73  DNTTLTVVVQSLCLGD-RVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 131

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            + M  + C+PTVVTY S+I G C+++ V+EA    E+M ++G  P++ TY++L+ G CK
Sbjct: 132 VETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCK 191

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                + +ELL  +  +   P+IVTYST+++GLCK G+L++AV+I + M      P A  
Sbjct: 192 SRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAIT 248

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAF 392
           Y  +I  +C  G   EA   L +MV     P+ +T++       T++   CK    + A+
Sbjct: 249 YNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYT-------TLMSAFCKMGRLDDAY 301

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +++  M    +S D +T++SL+   C +G +  +  +++E+   GC P   T++ V+   
Sbjct: 302 ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 361

Query: 453 WDRRKMRQAAELL 465
               ++R+A EL+
Sbjct: 362 CKANQVRKAEELV 374



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 197/425 (46%), Gaps = 41/425 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T+S ++  L    +   A  L++ + +  C  T   + SI  G+ R  R  +A
Sbjct: 104 GMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEA 163

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
               ++M   GC P   +Y  ++    +   +         +   G  P + + + +I  
Sbjct: 164 HGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDG 223

Query: 165 LCK-------------------------------NSGTMDAAFKIFREMPNRGCTPDSYT 193
           LCK                                +G MD A ++  +M +  C PD  T
Sbjct: 224 LCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVT 283

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y TL++  C++G++ +A ELF++M     SP VVT+TSL++GLC    +E+A+ L EE+ 
Sbjct: 284 YTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEIT 343

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            +G  P ++TY+ ++DG CK     +A EL+    S+   PN VTY+ L+ G C+ G+  
Sbjct: 344 RRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTD 403

Query: 314 EAVEILDRMKLQG--LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +A++ LD++  +G        +Y  I+   C  G+  +A  F +EM+  G  P   T++ 
Sbjct: 404 QALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFA- 462

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 TVV  LCK   P +A ++   M     +    T  ++++ +C+ G I K+  + 
Sbjct: 463 ------TVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELA 516

Query: 431 DELVL 435
            EL L
Sbjct: 517 SELRL 521



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 175/318 (55%), Gaps = 19/318 (5%)

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           NV+I  LC+ +G +  A  ++R+M N    PD  TY  L++GL +  ++ +A ++ +EM 
Sbjct: 9   NVVIGGLCR-AGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMV 66

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +    P   T T ++  LC    V++A  L EEM  +G+  N  TYS+L+DGLCK     
Sbjct: 67  SARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLD 126

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A+ L++ M  +   P +VTY++++ G C+  ++ EA   +++M  +G  PD   Y  +I
Sbjct: 127 EAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALI 186

Query: 339 SCFC---DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQV 394
             FC   D+G+  E    L E+   G TP+ +T+S       TV+ GLCK    R A  +
Sbjct: 187 GGFCKSRDVGRGLE---LLGEVTRRGFTPDIVTYS-------TVIDGLCKAGRLRDAVDI 236

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           +  M   S +  ++TY+SLI  +C+ GD+ ++ R++ ++V D C PD  T++ +M+A   
Sbjct: 237 FEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCK 293

Query: 455 RRKMRQAAELLLLELMNK 472
             ++  A EL    + NK
Sbjct: 294 MGRLDDAYELFQQMVANK 311



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 171/336 (50%), Gaps = 9/336 (2%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +DV + L +    T     GF  D  T+S +I  L  A + R A D+ + ++   C  T 
Sbjct: 193 RDVGRGLELLGEVTR---RGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTA 246

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + S+  GY R     +A+R+  KM +  C P   +Y T+++   +  +L  A+  ++ 
Sbjct: 247 ITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQ 306

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M    + P V +   L+  LC   G M+ A ++  E+  RGC P  YTY  +++G C+  
Sbjct: 307 MVANKLSPDVVTFTSLVDGLC-GEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKAN 365

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG--VEPNVFT 263
           ++ +A+EL  +  ++   P  VTY  L+ G C++   ++A++  +++ S+G     +V  
Sbjct: 366 QVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAM 425

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y+ ++D LC+ G +  A++  + MI + + P   T++T++  LCK  + Q+A E+L+ M 
Sbjct: 426 YAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMI 485

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
             G  P  G    ++S +C  G  Q+A     E+ L
Sbjct: 486 KYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 521



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 86/169 (50%), Gaps = 9/169 (5%)

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P  + ++ ++ GLC+ G+L+ A+ +  +M      PD   Y K++       + ++A   
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMN-DAHPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
           L EMV     P+  T ++       VVQ LC  D  + A ++   M +R ++ +++TYS+
Sbjct: 62  LQEMVSARHVPDNTTLTV-------VVQSLCLGDRVDDARELVEEMLHRGMAANAITYSA 114

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           L+   CK   + ++  +V+ +   GC P   T+++++T     R++ +A
Sbjct: 115 LVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEA 163



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 375 IHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           +HN V+ GLC+    R A  VY  M N +   D LTY+ L+    K   +  + +++ E+
Sbjct: 7   LHNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEM 65

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V    +PD  T + V+ +L    ++  A EL+
Sbjct: 66  VSARHVPDNTTLTVVVQSLCLGDRVDDARELV 97


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/475 (28%), Positives = 233/475 (49%), Gaps = 49/475 (10%)

Query: 16  AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR 75
           +++L+++   K VNKAL +F        N      + ++ +I  L+         +L + 
Sbjct: 163 SEILKILGKAKMVNKALSVFYQIKGRKCNP---TATVYNTLILMLMHEGHHEKIHELYNE 219

Query: 76  VNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           +  E  C      + ++   +G++ R   A R+FD+MKE G  PT K Y T+LA+  + N
Sbjct: 220 ICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLN 279

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           +++ A R    M+  G  P V +   LIK L K  G +D A+ +F  M   GC PD    
Sbjct: 280 KVEAALRLVEEMKGKGCAPTVFTYTELIKGLGK-VGRVDDAYSLFFNMLKDGCKPDVVLI 338

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRLFEEMR 253
             LIN L R G++ +A +LF +M++  C+P VVTY ++I  + +SK+   EA   FE+M+
Sbjct: 339 NNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMK 398

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE---- 309
           + G+ P+ FTY+ L+DG CK     +A+ LL+ M  K   P    Y +L++ L +     
Sbjct: 399 ANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYE 458

Query: 310 -------------------------------GKLQEAVEILDRMKLQGLKPDAGLYGKII 338
                                          G+L +AV++   MK  G  PD   Y  ++
Sbjct: 459 AANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALM 518

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
           S     G   EA + +  M   G TP+       I+ HN ++ GL KT  P RA +++  
Sbjct: 519 SGMIRAGMIDEAHSLMRNMRENGCTPD-------IKSHNIILNGLAKTGGPKRAIEMFTK 571

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           M+   I  D+++Y+++++C  + G    +A+++ E+ L G   D  T+S+++ A+
Sbjct: 572 MKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAV 626



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 126/532 (23%), Positives = 224/532 (42%), Gaps = 103/532 (19%)

Query: 6   MFKWSTKITSA-QVLQLIRAEKDVNKALVIFDSATAEYA--------NGFRHDNSTFSLM 56
           +FKW +    A +VL+L    + V++ L I     A+            F+HD++T+  +
Sbjct: 71  IFKWGSDAEKAIEVLKLKVDHRLVHQVLDIDVEIRAKIQFFKWAGKRQHFQHDSTTYMAL 130

Query: 57  I-----SKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           I     S LV    +R  +D++    +  C +    +  I +  G+      A+ VF ++
Sbjct: 131 IRCLEESGLVD-EMWRTIQDMI----RSPCSVGPAEWSEILKILGKAKMVNKALSVFYQI 185

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K   C PT   Y T++ +L+ E                                    G 
Sbjct: 186 KGRKCNPTATVYNTLILMLMHE------------------------------------GH 209

Query: 172 MDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +   +++ E+ + G C+PD+ TY  LI+   +L +   A  LF EM+     PT   YT
Sbjct: 210 HEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYT 269

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +++    +   VE A+RL EEM+ KG  P VFTY+ L+ GL K G    A  L   M+  
Sbjct: 270 TILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKD 329

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII-SCFCDIGKYQE 349
             +P++V  + L+N L + G+L++A+++  +M      P+   Y  +I + F       E
Sbjct: 330 GCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASE 389

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS---- 404
           AA + ++M   GI P+  T+++       ++ G CKT+   +A  +   M  +       
Sbjct: 390 AALWFEKMKANGIAPSSFTYAI-------LIDGFCKTNRVEKALLLLEEMDEKGFPPCPA 442

Query: 405 -----VDSL--------------------------TYSSLITCFCKKGDIHKSARIVDEL 433
                +DSL                           Y+ +I  F   G +  +  +  E+
Sbjct: 443 AYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEM 502

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQDV 485
              GC PD  T++A+M+ +     + +A  L+     N C     DI++ ++
Sbjct: 503 KKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTP---DIKSHNI 551



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 154/307 (50%), Gaps = 5/307 (1%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL- 102
           +G + D    + +I+ L  A +   A  L  +++  +C      + ++ +       P  
Sbjct: 329 DGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPAS 388

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A   F+KMK  G  P+  +Y  ++    + N+++ A      M E G  PC A+   LI
Sbjct: 389 EAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 448

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            +L + +   +AA ++F+E+        +  Y  +I      G++ +A +LF EM+   C
Sbjct: 449 DSLGR-AKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGC 507

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP V TY +L++G+ ++  ++EA  L   MR  G  P++ +++ +++GL K G   +A+E
Sbjct: 508 SPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIE 567

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   M      P+ V+Y+T+L+ L + G  + A +++  MKL+G + D+  Y  I+    
Sbjct: 568 MFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEA-- 625

Query: 343 DIGKYQE 349
            +GK  E
Sbjct: 626 -VGKVDE 631


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 198/375 (52%), Gaps = 12/375 (3%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  R       F +  ++G + +  S   +++ LV+  ++      Y+ M    I+P
Sbjct: 102 AYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEP 161

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI---YEA 210
            + S N++I  LCK  G ++ A  I  +M  RG + +  TY TLI+G C++GKI   Y+A
Sbjct: 162 TLISFNIVINGLCK-VGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKA 220

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             + KEM      P  VT+  LI+G C+ K+V  AM++F EM  +GV+PNV TY+SL++G
Sbjct: 221 DAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLING 280

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC  G  ++A  L   M++   +PNI+T++ LLNG CK   +++A E+ D M  QG+ P+
Sbjct: 281 LCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPN 340

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPN 389
              Y  +I  +C     ++A      M+  G+ P+       +  +N ++ GLC K D  
Sbjct: 341 VTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPD-------VSTYNCLIAGLCRKGDLE 393

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  +   M  + +  D +TY+ LI   C KG++ K+ R++DE+   G  P + T++ ++
Sbjct: 394 AARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMI 453

Query: 450 TALWDRRKMRQAAEL 464
                   +R A  L
Sbjct: 454 DGYCKEGNLRAALNL 468



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 217/418 (51%), Gaps = 18/418 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G +   ++ + ++S LV   +    E +   + + + + T   F  +  G  +V +   A
Sbjct: 123 GLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKA 182

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR---FYRHMREIGIQPCVASLNVL 161
             + + MK  G      +Y T++    +  ++   ++     + MR  GI P   + N+L
Sbjct: 183 GDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNIL 242

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK+   + AA K+F EM  +G  P+  TY +LINGLC  GK+ EA  L  +M    
Sbjct: 243 IDGFCKDK-NVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSC 301

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P ++T+ +L+NG C++K V++A  LF++M  +G+ PNV TY+ L+D  CK      A 
Sbjct: 302 LKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAF 361

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            L ++M+ K   P++ TY+ L+ GLC++G L+ A  ++  M  + LK D   Y  +I   
Sbjct: 362 ALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSL 421

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
           C+ G+ ++A   LDEM   G+ P++LT+       NT++ G CK    RA    L++R++
Sbjct: 422 CNKGEMKKALRLLDEMCRKGLKPSQLTY-------NTMIDGYCKEGNLRA---ALNLRSQ 471

Query: 402 SISVDSL----TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
              V  L    TY+ LI  FCKK  +  +  +++E++  G +P+  T+  V   + ++
Sbjct: 472 MEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEK 529



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 183/334 (54%), Gaps = 14/334 (4%)

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           +L F  ++   + G++  V S N L+  L K     D  F +++EM  R   P   ++  
Sbjct: 110 RLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEF-VYKEMIRRRIEPTLISFNI 168

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR---LFEEMR 253
           +INGLC++GK+ +A ++ ++M+ +  S  V+TY +LI+G C+   + +  +   + +EMR
Sbjct: 169 VINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMR 228

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           + G+ PN  T++ L+DG CK    S AM++   M  +  +PN+VTY++L+NGLC  GK+ 
Sbjct: 229 ADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVN 288

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA  + D+M    LKP+   +  +++ FC     ++A    D+M   GITPN  T+    
Sbjct: 289 EATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTY---- 344

Query: 374 RIHNTVVQGLCKTDPN--RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
              N ++   CK D N   AF +Y  M  + +  D  TY+ LI   C+KGD+  +  +V 
Sbjct: 345 ---NILIDAYCK-DENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVS 400

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           E+       D  T++ ++ +L ++ +M++A  LL
Sbjct: 401 EMDTKHLKADLITYNILIDSLCNKGEMKKALRLL 434



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 149/292 (51%), Gaps = 1/292 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G   +  TF+++I           A  +   +N++        + S+  G     +  
Sbjct: 229 ADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVN 288

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  + D+M     +P   ++  +L    +   +K A   +  M + GI P V + N+LI
Sbjct: 289 EATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILI 348

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A CK+   M+ AF ++R M  +G  PD  TY  LI GLCR G +  A+ L  EM+TK  
Sbjct: 349 DAYCKDE-NMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHL 407

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              ++TY  LI+ LC    +++A+RL +EM  KG++P+  TY++++DG CK G    A+ 
Sbjct: 408 KADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALN 467

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           L   M       N+ TY+ L+ G CK+ KL++A  +L+ M  +GL P+   Y
Sbjct: 468 LRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTY 519



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 142/289 (49%), Gaps = 10/289 (3%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR-VNK--EKC 81
           +K+V+ A+ +F     +   G + +  T++ +I+ L +  +   A  L D+ VN   +  
Sbjct: 249 DKNVSAAMKVFAEMNRQ---GVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPN 305

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
            IT +  L+   G+ +      A  +FD M + G  P   +Y  ++    ++  ++ AF 
Sbjct: 306 IITHNALLN---GFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFA 362

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            YR M   G+ P V++ N LI  LC+  G ++AA  +  EM  +    D  TY  LI+ L
Sbjct: 363 LYRIMLGKGVCPDVSTYNCLIAGLCR-KGDLEAARNLVSEMDTKHLKADLITYNILIDSL 421

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C  G++ +A  L  EM  K   P+ +TY ++I+G C+  ++  A+ L  +M   G   NV
Sbjct: 422 CNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANV 481

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            TY+ L+ G CK      A  LL  M+ K   PN +TY  +   + ++G
Sbjct: 482 ATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 230/434 (52%), Gaps = 10/434 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I+          A ++++ ++ +    T   + ++  G  +  R + A
Sbjct: 215 GIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRA 274

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             VF++M   G  P   +Y T+L      N    A   +  M   G+ P + S + LI  
Sbjct: 275 KGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGV 334

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             +N G +D A   FR+M   G  PD+  Y  LING CR G + EA E+  +M  + C+ 
Sbjct: 335 SSRN-GHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCAL 393

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV Y +++NGLC+ K + +A  LF+EM  +GV P+  T+++L+ G CK G   +A+ L 
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLF 453

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M  K  +P+IVTY+ L++G CK  ++++A E+ + M  + + P+   Y  +++ +C++
Sbjct: 454 GIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNL 513

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           G   EA    DEM+  GI P  +T        NTV++G C++ D ++A +    M +  +
Sbjct: 514 GFVSEAFRLWDEMIRKGIKPTLVTC-------NTVIKGYCRSGDLSKADEFLGKMISEGV 566

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             DS+TY++LI  F K   + K+  +++++   G  PD  T++ ++     + +M Q AE
Sbjct: 567 GPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRM-QEAE 625

Query: 464 LLLLELMNKCVEAE 477
           L+L +++ + ++ +
Sbjct: 626 LILRKMIERGIDPD 639



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 193/366 (52%), Gaps = 9/366 (2%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           R +  L+A  +F  M   G  P   S+ +++ +      L  A  ++R M+  G+ P   
Sbjct: 302 RNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNV 361

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
              +LI   C+N G M  A +I  +M  +GC  D   Y T++NGLC+   + +A  LF E
Sbjct: 362 IYTILINGYCRN-GMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDE 420

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +   P   T+T+LI+G C+  ++ +A+ LF  M  K ++P++ TY+ L+DG CK   
Sbjct: 421 MVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTE 480

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A EL   MIS++  PN ++Y+ L+NG C  G + EA  + D M  +G+KP       
Sbjct: 481 MEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNT 540

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           +I  +C  G   +A  FL +M+  G+ P+ +T+       NT++ G  K +  ++AF + 
Sbjct: 541 VIKGYCRSGDLSKADEFLGKMISEGVGPDSITY-------NTLINGFVKGEYMDKAFFLI 593

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M  + +  D +TY+ ++  FC++G + ++  I+ +++  G  PD  T++ ++     +
Sbjct: 594 NKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQ 653

Query: 456 RKMRQA 461
             +++A
Sbjct: 654 DNLKEA 659



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 169/321 (52%), Gaps = 9/321 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  GY R     +A+ + DKM E GC     +Y T+L  L ++  L  A   +  M
Sbjct: 362 IYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEM 421

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G+ P   +   LI   CK  G M  A  +F  M  +   PD  TY  LI+G C+  +
Sbjct: 422 VERGVVPDFCTFTTLIHGHCK-EGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTE 480

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A EL+ EM ++   P  ++Y  L+NG C    V EA RL++EM  KG++P + T ++
Sbjct: 481 MEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNT 540

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G  S+A E L  MIS+   P+ +TY+TL+NG  K   + +A  ++++M+ +G
Sbjct: 541 VIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKG 600

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L+PD   Y  I++ FC  G+ QEA   L +M+  GI P+R T++       T++ G    
Sbjct: 601 LQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYT-------TLINGYVSQ 653

Query: 387 DP-NRAFQVYLSMRNRSISVD 406
           D    AF+ +  M  R    D
Sbjct: 654 DNLKEAFRFHDEMLQRGFVPD 674



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 174/323 (53%), Gaps = 1/323 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            +G   DN  ++++I+          A ++ D++ ++ C +    + +I  G  +     
Sbjct: 353 TSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLA 412

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M E G  P   ++ T++    +E  +  A   +  M +  I+P + + N+LI
Sbjct: 413 DANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILI 472

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK +  M+ A +++ EM +R   P+  +Y  L+NG C LG + EA  L+ EM  K  
Sbjct: 473 DGFCKTT-EMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGI 531

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT+VT  ++I G C+S  + +A     +M S+GV P+  TY++L++G  KG    +A  
Sbjct: 532 KPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFF 591

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L+  M +K  +P++VTY+ +LNG C++G++QEA  IL +M  +G+ PD   Y  +I+ + 
Sbjct: 592 LINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYV 651

Query: 343 DIGKYQEAANFLDEMVLGGITPN 365
                +EA  F DEM+  G  P+
Sbjct: 652 SQDNLKEAFRFHDEMLQRGFVPD 674



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 192/406 (47%), Gaps = 42/406 (10%)

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           C +   +F  + R Y +  +  +    F  ++  G   +  +  ++L  LV+   + LA+
Sbjct: 111 CGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAW 170

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKN-------------------------------- 168
             Y  +   GI+  V +LN+++ ALCK+                                
Sbjct: 171 EVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAY 230

Query: 169 --SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
              G +  AF++   M  +G  P  +TY  +INGLC+ G+   AK +F EM +   SP  
Sbjct: 231 CREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDT 290

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            TY +L+   C++ +  EA  +F +M  +GV P++ ++SSL+    + G   QA+   + 
Sbjct: 291 TTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRD 350

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M +    P+ V Y+ L+NG C+ G + EA+EI D+M  QG   D   Y  I++  C    
Sbjct: 351 MKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKL 410

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
             +A    DEMV  G+ P+  T++       T++ G CK  +  +A  ++  M  ++I  
Sbjct: 411 LADANALFDEMVERGVVPDFCTFT-------TLIHGHCKEGNMGKALSLFGIMTQKNIKP 463

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D +TY+ LI  FCK  ++ K+  + +E++     P+  +++ ++  
Sbjct: 464 DIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNG 509



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 164/336 (48%), Gaps = 9/336 (2%)

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V+  +L      ++ +R  G    + + N L+  L K  G +D A++++ E+   G   +
Sbjct: 126 VQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVK-MGWVDLAWEVYNEIARSGIELN 184

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YT   ++N LC+  KI + K    +ME K     +VTY +LIN  C+   + EA  +  
Sbjct: 185 VYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMN 244

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            M  KG++P +FTY+++++GLCK G   +A  +   M+S    P+  TY+TLL   C+  
Sbjct: 245 SMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNN 304

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
              EA +I   M  +G+ PD   +  +I      G   +A  +  +M   G+ P+ + ++
Sbjct: 305 NFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYT 364

Query: 371 LHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
           +       ++ G C+    + A ++   M  +  ++D + Y++++   CKK  +  +  +
Sbjct: 365 I-------LINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANAL 417

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            DE+V  G +PD  T++ ++        M +A  L 
Sbjct: 418 FDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLF 453



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 8/279 (2%)

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           C  D+  +  LI    +  K+ E  + FK +  K    ++    SL+ GL +   V+ A 
Sbjct: 111 CGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAW 170

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            ++ E+   G+E NV+T + +++ LCK          L  M  K    +IVTY+TL+N  
Sbjct: 171 EVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAY 230

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           C+EG L EA E+++ M  +GLKP    Y  +I+  C  G+Y  A    +EM+  G++P+ 
Sbjct: 231 CREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDT 290

Query: 367 LTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
            T+       NT++   C+ +    A  ++  M +R +S D +++SSLI    + G + +
Sbjct: 291 TTY-------NTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQ 343

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +     ++   G +PD   ++ ++        M +A E+
Sbjct: 344 ALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEI 382



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 8/232 (3%)

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +  C    + +  LI    Q++ + E    F+ +R KG   ++   +SL+ GL K G   
Sbjct: 108 SSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVD 167

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A E+   +       N+ T + ++N LCK+ K+ +    L  M+ +G+  D   Y  +I
Sbjct: 168 LAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLI 227

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLS 397
           + +C  G   EA   ++ M   G+ P   T+       N V+ GLCK     RA  V+  
Sbjct: 228 NAYCREGLLGEAFEVMNSMSGKGLKPTLFTY-------NAVINGLCKKGRYVRAKGVFNE 280

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           M +  +S D+ TY++L+   C+  +  ++  I  +++  G  PD  ++S+++
Sbjct: 281 MLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLI 332


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 198/355 (55%), Gaps = 9/355 (2%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           MK  G  P   SY TV+       +L+   +  + M+  G++P + + N +I  LCK SG
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCK-SG 59

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +D A ++ REM N+G  PD+  Y TLI+G C+LG I  A +LF EME +   P  + YT
Sbjct: 60  KVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYT 119

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++I GLC+   + EA ++F +M S+GVEP+  TY++L+DG CK G   +A  L   M+  
Sbjct: 120 AVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQS 179

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN+VTY+ L +GLCK G++  A E+L  M  +GL+ +   Y  +++  C  G  ++A
Sbjct: 180 GLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQA 239

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
              ++EM + G+ P+ +T++       T++   CKT +  +A ++   M +R +    +T
Sbjct: 240 VKLMEEMEVAGMYPDTITFT-------TLMDAYCKTGEMVKAHELLREMLDRGLQPTVIT 292

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           ++ L+  FC  G +    R++  ++  G +P+  T++++M     R  MR   E+
Sbjct: 293 FNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEI 347



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 201/375 (53%), Gaps = 9/375 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  GY         +++  +M+  G +P   +Y +++ +L +  ++  A R  R M 
Sbjct: 13  YSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMI 72

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             GI P       LI   CK  G + AA+K+F EM  +   PD   Y  +I GLCR GK+
Sbjct: 73  NQGIVPDTVVYTTLIDGFCK-LGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKM 131

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA ++F +M ++   P  VTYT+LI+G C+S  +E+A  L  +M   G+ PNV TY++L
Sbjct: 132 MEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTAL 191

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
            DGLCK G    A ELL  M  K  + NI TY++L+NGLCK G +++AV++++ M++ G+
Sbjct: 192 ADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGM 251

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            PD   +  ++  +C  G+  +A   L EM+  G+ P  +T+       N ++ G C + 
Sbjct: 252 YPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITF-------NVLMNGFCMSG 304

Query: 388 PNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
                +  L+ M  + I  ++ TY+SL+  +C + ++  +  I   +   G +PD  T++
Sbjct: 305 MLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYN 364

Query: 447 AVMTALWDRRKMRQA 461
            ++      R M++A
Sbjct: 365 ILIKGHCKARNMKEA 379



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 166/285 (58%), Gaps = 8/285 (2%)

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  RG  PD  +Y T+ING C  G++ +  +L +EM+ K   P + TY S+I  LC+S  
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V++A R+  EM ++G+ P+   Y++L+DG CK G    A +L   M  +R  P+ + Y+ 
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           ++ GLC+ GK+ EA ++ ++M  +G++PD   Y  +I  +C  G+ ++A +  ++MV  G
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG 180

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           +TPN +T++        +  GLCK    + A ++   M  + + ++  TY+SL+   CK 
Sbjct: 181 LTPNVVTYT-------ALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKS 233

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G+I ++ ++++E+ + G  PD  T++ +M A     +M +A ELL
Sbjct: 234 GNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELL 278



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 187/392 (47%), Gaps = 11/392 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G   D   ++ +I         + A  L D + K++  I  D   + ++  G  R  + +
Sbjct: 75  GIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQR--IVPDFIAYTAVICGLCRCGKMM 132

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A +VF+KM   G EP   +Y T++    +  +++ AF  +  M + G+ P V +   L 
Sbjct: 133 EADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALA 192

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +D A ++  EM  +G   +  TY +L+NGLC+ G I +A +L +EME    
Sbjct: 193 DGLCK-LGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGM 251

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +T+T+L++  C++  + +A  L  EM  +G++P V T++ LM+G C  G       
Sbjct: 252 YPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGER 311

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M+ K   PN  TY++L+   C    ++   EI   M  +G+ PD+  Y  +I   C
Sbjct: 312 LLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHC 371

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
                +EA     EM   G     LT S +   ++ +     K   + A +++  MR   
Sbjct: 372 KARNMKEAWFLHKEMAEKGFN---LTASSY---NSIIKGFFKKKKISEARELFEEMRREG 425

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           ++ D+  Y+  +     +G++  +  + DE +
Sbjct: 426 MAADAEIYNLFVDISYGEGNMETALELCDEAI 457


>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 484

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 232/474 (48%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V++ +RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXLRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGXLIENFCKAGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+    KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVBSEKSAYISLVQSXLKKNEPXDAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 165/347 (47%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T++NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +    ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXLRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  CK G++  +A ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGXLIENFCKAGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 250/532 (46%), Gaps = 93/532 (17%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN 64
           ++ K    +T + V  L     D   AL  F+        GF+H+  ++S M++ L+ A 
Sbjct: 58  SLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALR--PGFKHNVHSYSSMLNILIRAR 115

Query: 65  QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124
               AE +   + K  C I + +F+            L+  R  +   EF  +PT + Y 
Sbjct: 116 LLGVAEKIRISMIKSCCSIEDVLFV------------LEVFRKMNADGEFKFKPTLRCYN 163

Query: 125 TVLA-----ILVEE----------NQLKLAFRFYRHMR--------------------EI 149
           T+L      +L++E          NQ+      +  M                     + 
Sbjct: 164 TILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQA 223

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G+ P   +   LI   C+N G +D A+++F  MP +GC  +  +Y  LI+GLC  G+I E
Sbjct: 224 GLHPDTFTYTSLILGHCRNKG-VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINE 282

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +LF +M    C PTV TYT LI  L  S    EA+ LF EM+ KG EPNV TY+ L+D
Sbjct: 283 ALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLID 342

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLCK     +A ++L  M  K   P++VTY+ L++G CKEG + +A EILD M+     P
Sbjct: 343 GLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGP 402

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-- 387
           +   Y ++I   C   K  +A   L++M+   ++P+ +T+       N+++ G CK +  
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITY-------NSLIHGQCKVNDL 455

Query: 388 ----------------PNR-AFQVYL-----------------SMRNRSISVDSLTYSSL 413
                           P++  + V++                 S++ + +  + + Y++L
Sbjct: 456 ESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTAL 515

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I  +CK G I  +  +++ ++ D CLP+  T++ ++  L   +KM++A+ L+
Sbjct: 516 IDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLV 567



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 208/422 (49%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I           A ++   + ++ C   E  + ++  G     R  +A
Sbjct: 224 GLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEA 283

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++F  M E  C PT ++Y  ++  L    +   A   +  M+E G +P V +  VLI  
Sbjct: 284 LKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDG 343

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +  MD A K+  EM  +G  P   TY  LI+G C+ G I +A E+   ME+ +C P
Sbjct: 344 LCKEN-KMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGP 402

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  LI GLC+ + V +AM L  +M  + + P++ TY+SL+ G CK      A  LL
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLL 462

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M      P+  TYS  ++ LCKEG+++EA  + D +K +G+K +  +Y  +I  +C +
Sbjct: 463 SLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKV 522

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSI 403
           GK   A + L+ M+     PN  T+       N +++GLCK    + A  +   M    +
Sbjct: 523 GKIDVAYSLLERMLNDACLPNSYTY-------NVLIEGLCKEKKMKEASSLVAKMLTMGV 575

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
               +TY+ LI    K G    + ++ + +V  G  PD  T++A + A + +  + +  +
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635

Query: 464 LL 465
           ++
Sbjct: 636 VI 637



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 224/472 (47%), Gaps = 42/472 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  +++ +I  L  A +   A  L   + ++ C  T   +  +        R ++A
Sbjct: 259 GCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEA 318

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F++MKE GCEP   +Y  ++  L +EN++  A +    M E G+ P V + N LI  
Sbjct: 319 LNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDG 378

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +D AF+I   M +  C P++ TY  LI GLC+  K+++A  L  +M  +  SP
Sbjct: 379 YCK-EGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSP 437

Query: 225 TVVTYTSLING-----------------------------------LCQSKSVEEAMRLF 249
           +++TY SLI+G                                   LC+   VEEA  LF
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           + +++KGV+ N   Y++L+DG CK G    A  LL+ M++    PN  TY+ L+ GLCKE
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
            K++EA  ++ +M   G+KP    Y  +I      G +  A    + MV  G  P+  T+
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 370 SLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
           +  +  H    QG+ +        V   M    I  D +TY+ LI  + + G  H++   
Sbjct: 618 TAFL--HAYFSQGMLE----EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDF 671

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQ 481
           +  +V  GC P     S ++  L    +M++    + ++ ++  +E E+ ++
Sbjct: 672 LKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALK 723



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/496 (24%), Positives = 209/496 (42%), Gaps = 83/496 (16%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I           A ++LD +    C      +  +  G  +  +   AM + +KM
Sbjct: 371 TYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKM 430

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E    P+  +Y +++    + N L+ A+R    M E G+ P   + +V I  LCK  G 
Sbjct: 431 LERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK-EGR 489

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F  +  +G   +   Y  LI+G C++GKI  A  L + M   AC P   TY  
Sbjct: 490 VEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNV 549

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI GLC+ K ++EA  L  +M + GV+P V TY+ L+  + K G    A+++   M+S  
Sbjct: 550 LIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLG 609

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P++ TY+  L+    +G L+E  +++ +M  +G+ PD   Y  +I  +  +G    A 
Sbjct: 610 YQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAF 669

Query: 352 NFLDEMVLGGITP-------------------------------NRLTW----------- 369
           +FL  MV  G  P                               N L +           
Sbjct: 670 DFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMV 729

Query: 370 ----SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
               ++ + I+  ++ G C+ +    A  +   M+ R +S     Y+SL+ C CK G   
Sbjct: 730 EHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYA 789

Query: 425 KSARIVDELVLDGCLP-----------------------------------DEGTWSAVM 449
           ++ R+VD +V +G LP                                   DE  W  ++
Sbjct: 790 EAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLI 849

Query: 450 TALWDRRKMRQAAELL 465
             L  R  + + +EL+
Sbjct: 850 DGLLKRDLVDECSELI 865



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 191/427 (44%), Gaps = 25/427 (5%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T+S+ I  L    +   A  L D V  +     E I+ ++  GY +V +   
Sbjct: 468 NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDV 527

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  + ++M    C P   +Y  ++  L +E ++K A      M  +G++P V +  +LI 
Sbjct: 528 AYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIG 587

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            + K+ G  D A K+F  M + G  PD  TY   ++     G + E  ++  +M  +   
Sbjct: 588 EMLKD-GAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGIL 646

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG--------- 274
           P +VTYT LI+G  +      A    + M   G +P+++  S L+  L            
Sbjct: 647 PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSE 706

Query: 275 -GCSSQ--------AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            G  S         A++L + M+      ++  Y  L+ G C++ +L+EA  ++  MK +
Sbjct: 707 IGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKER 766

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G+ P   +Y  ++ C C +G Y EA   +D MV  G+ P  L  S  + +    ++G   
Sbjct: 767 GMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLP--LLESYKLLVCGLYIEG--- 821

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
               +A  V+  + +   + D + +  LI    K+  + + + ++D +   GC P+  T+
Sbjct: 822 -SNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTY 880

Query: 446 SAVMTAL 452
           S ++  L
Sbjct: 881 SLLIEGL 887



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 1/160 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D S +  +I+      +   A+ L+  + +     +EDI+ S+     ++    +
Sbjct: 731 HGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAE 790

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+R+ D M E G  P  +SY  ++  L  E   + A   +  +   G      +  VLI 
Sbjct: 791 AVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLID 850

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
            L K    +D   ++   M  +GC P+  TY  LI GL R
Sbjct: 851 GLLKRD-LVDECSELIDIMEEKGCQPNPLTYSLLIEGLER 889



 Score = 45.4 bits (106), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 24/193 (12%)

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           + N+ +YS++LN             IL R +L G+     +   I SC C I    E   
Sbjct: 98  KHNVHSYSSMLN-------------ILIRARLLGVAEKIRI-SMIKSC-CSI----EDVL 138

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK---TDPNRAFQVYLSMRNRSISVDSLT 409
           F+ E+           +   +R +NT++  L K    D  +   VYL + N  IS +  T
Sbjct: 139 FVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKT--VYLELLNNQISPNIYT 196

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           +++++  +CK G++ ++     ++V  G  PD  T+++++      + +  A E+ L+  
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMP 256

Query: 470 MNKCVEAEVDIQN 482
              C   EV   N
Sbjct: 257 QKGCQRNEVSYTN 269


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/422 (29%), Positives = 213/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H+  + +++I+ L   +    A  ++ ++ K         F ++  G     +  +A
Sbjct: 126 GVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEA 185

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F++M   G EP   SY TV+  L +     +A R +R M +   +P V + N +I +
Sbjct: 186 VGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDS 245

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+   ++ A +   EM +RG  PD  TY T+++G C LG++ EA  LFKEM  +   P
Sbjct: 246 LCKDR-LVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMP 304

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT+  L++GLC+   V EA  + E M  KG EPN +TY++LMDG C      +A+++L
Sbjct: 305 DTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVL 364

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +MI K   PN+ +Y+ L+NG CK  ++ EA  +L  M  + L PD   Y  ++   C +
Sbjct: 365 GIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQV 424

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+ +EA N   EM   G+ P+ + +S+       ++ G CK    + A ++   M  R I
Sbjct: 425 GRPREALNLFKEMCSSGLLPDLMAYSI-------LLDGFCKHGHLDEALKLLKEMHERRI 477

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             + + Y+ LI      G +  +  +  +L  DG  PD  T++ ++  L       +A E
Sbjct: 478 KPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYE 537

Query: 464 LL 465
             
Sbjct: 538 FF 539



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 193/392 (49%), Gaps = 30/392 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F +M      P+   +   L  + ++ Q   A      M   G+   V SLNVLI
Sbjct: 79  DALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLI 138

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+ S  +D A  +  +M   G  PD+ T+ TLINGLC  GKI EA  LF EM     
Sbjct: 139 NCLCRLS-HVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGH 197

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V++Y ++INGLC++ +   A+R+F +M     +PNV TY++++D LCK    ++A+E
Sbjct: 198 EPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVE 257

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L  M+ +   P++VTY+T+L+G C  G+L EA  +   M  + + PD   +  ++   C
Sbjct: 258 FLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLC 317

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWS-------LHIRI-------------------- 375
             G   EA    + M   G  PN  T++       LH ++                    
Sbjct: 318 KEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLS 377

Query: 376 -HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            +N ++ G CK+   N A ++   M  ++++ D++TYS+L+   C+ G   ++  +  E+
Sbjct: 378 SYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEM 437

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              G LPD   +S ++        + +A +LL
Sbjct: 438 CSSGLLPDLMAYSILLDGFCKHGHLDEALKLL 469



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 168/326 (51%), Gaps = 9/326 (2%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           +I  G+  + +  +A R+F +M      P   ++  ++  L +E  +  A      M E 
Sbjct: 276 TILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEK 335

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G +P   + N L+   C ++  MD A K+   M  +GC P+  +Y  LING C+  ++ E
Sbjct: 336 GAEPNAYTYNALMDGYCLHN-QMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNE 394

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           AK L  EM  K  +P  VTY++L+ GLCQ     EA+ LF+EM S G+ P++  YS L+D
Sbjct: 395 AKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLD 454

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G CK G   +A++LL+ M  +R +PNI+ Y+ L+ G+   GKL+ A E+  ++   G++P
Sbjct: 455 GFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRP 514

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388
           D   Y  +I      G   EA  F  +M   G  P+  ++       N ++QG  +  D 
Sbjct: 515 DIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSY-------NVIIQGFLQNQDS 567

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLI 414
           + A Q+   M  +  S DS T+  L+
Sbjct: 568 STAIQLIDEMVGKRFSADSSTFQMLL 593



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 153/307 (49%), Gaps = 8/307 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N  ++D A   F  M      P    +G  +  + +  +   A  L  +M+    +  V 
Sbjct: 73  NDISIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVY 132

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +   LIN LC+   V+ A+ +  +M   G++P+  T+++L++GLC  G   +A+ L   M
Sbjct: 133 SLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEM 192

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           +   H PN+++Y+T++NGLCK G    AV +  +M+    KP+   Y  II   C     
Sbjct: 193 VWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLV 252

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            EA  FL EMV  GI P+ +T+       NT++ G C     N A +++  M  R++  D
Sbjct: 253 NEAVEFLSEMVDRGIPPDVVTY-------NTILHGFCSLGQLNEATRLFKEMVGRNVMPD 305

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           ++T++ L+   CK+G + ++  + + +   G  P+  T++A+M       +M +A ++L 
Sbjct: 306 TVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLG 365

Query: 467 LELMNKC 473
           + +   C
Sbjct: 366 IMIGKGC 372



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 1/253 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ ++      NQ   A  +L  +  + C      +  +  GY +  R  +A R+  +M
Sbjct: 343 TYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM 402

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E    P   +Y T++  L +  + + A   ++ M   G+ P + + ++L+   CK+ G 
Sbjct: 403 SEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKH-GH 461

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A K+ +EM  R   P+   Y  LI G+   GK+  AKELF ++      P + TY  
Sbjct: 462 LDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNV 521

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I GL +    +EA   F +M   G  P+  +Y+ ++ G  +   SS A++L+  M+ KR
Sbjct: 522 MIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKR 581

Query: 292 HRPNIVTYSTLLN 304
              +  T+  LL+
Sbjct: 582 FSADSSTFQMLLD 594



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 96/232 (41%), Gaps = 36/232 (15%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           S+++++I+    + +   A+ LL  ++++        + ++ +G  +V RP +A+ +F +
Sbjct: 377 SSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKE 436

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE---------------------- 148
           M   G  P   +Y  +L    +   L  A +  + M E                      
Sbjct: 437 MCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGK 496

Query: 149 -------------IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
                         GI+P + + NV+IK L K  G  D A++ FR+M + G  PDS +Y 
Sbjct: 497 LEVAKELFSKLSADGIRPDIWTYNVMIKGLLK-EGLSDEAYEFFRKMEDDGFLPDSCSYN 555

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            +I G  +      A +L  EM  K  S    T+  L++     + +   MR
Sbjct: 556 VIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESHDEIISRFMR 607


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 221/425 (52%), Gaps = 12/425 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDL-LDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           GFR D   F+ ++  L +  +   A D+ L R+ +  C      +  + +G    +R  +
Sbjct: 121 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE 180

Query: 104 AMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           A+ +   M + G  C P   SY TV+    +E  L  A+  Y  M + GI P V + N +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSI 240

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I ALCK +  MD A ++   M   G  P+  TY ++++G C  G+  EA    K+M +  
Sbjct: 241 IAALCK-AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVTY SL++ LC++    EA ++F+ M  +G++P + TY +L+ G    G   +  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL +M+     PN   +S L+    K+GK+ +A+ +  +M+ QGL PD   YG +I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  G+ ++A  + ++M+   ++P  +       ++N+++  LC  D  ++A ++ L M +
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNI-------VYNSLIHSLCIFDKWDKAKELILEMLD 472

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I +D++ ++S+I   CK+G + +S ++ D +V  G  P+  T+S ++       KM +
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDE 532

Query: 461 AAELL 465
           A +LL
Sbjct: 533 ATKLL 537



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 187/333 (56%), Gaps = 10/333 (3%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGL 201
           R M ++G  P V S N+L+K LC  + + +A  ++ + MP+ G  C PD  +Y T+ING 
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEA-LELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
            + G + +A   + EM  +   P VVTY S+I  LC+++++++AM +   M   GV PN 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY+S++ G C  G   +A+  L+ M S    P++VTY++L++ LCK G+  EA ++ D 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  +GLKP+   YG ++  +   G   E    LD MV  GI PN   +S+ I  +    Q
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY--AKQ 387

Query: 382 GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           G  K D  +A  V+  MR + ++ D++TY ++I   CK G +  + R  ++++ +   P 
Sbjct: 388 G--KVD--QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
              +++++ +L    K  +A E L+LE++++ +
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKE-LILEMLDRGI 475



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 225/454 (49%), Gaps = 12/454 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +   + ++KA+ +    T+   NG   +  T++ ++    S+ Q + A   
Sbjct: 235 VTYNSIIAALCKAQAMDKAMEVL---TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L +++ +  +     + S+     +  R  +A ++FD M + G +P   +Y T+L     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L         M   GI P     ++LI A  K  G +D A  +F +M  +G  PD+ 
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ-GKVDQAMLVFSKMRQQGLNPDTV 410

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYGT+I  LC+ G++ +A   F++M  +  SP  + Y SLI+ LC     ++A  L  EM
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+  +   ++S++D  CK G   ++ +L  +M+    +PNI+TYSTL++G C  GK+
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKM 530

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L  M   G+KPD   Y  +I+ +C I + ++A     EM   G++P+ +T+   
Sbjct: 531 DEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY--- 587

Query: 373 IRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               N ++QGL +T    A  ++Y+ +      ++  TY+ ++   CK     ++ R+  
Sbjct: 588 ----NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQ 643

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            L L     +  T++ ++ AL    +  +A +L 
Sbjct: 644 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLF 677



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 191/428 (44%), Gaps = 43/428 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           +FDS T     G + + +T+  ++    +         LLD + +        +F  +  
Sbjct: 326 MFDSMTKR---GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +   AM VF KM++ G  P   +Y TV+ IL +  +++ A R++  M +  + P
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 154 CVASLNVLIKALC----------------KNSGTMDAAF------------------KIF 179
                N LI +LC                     +D  F                  K+F
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  P+  TY TLI+G C  GK+ EA +L   M +    P  VTY +LING C+ 
Sbjct: 503 DLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +E+A+ LF EM S GV P++ TY+ ++ GL +   ++ A EL   +     +  + TY
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     EA+ +   + L  L+ +   +  +I     +G+  EA +    +  
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G+ P+  T+SL     N + QGL +        ++LSM     + +S   +S++    +
Sbjct: 683 NGLVPDVRTYSL--MAENLIEQGLLEE----LDDLFLSMEENGCTANSRMLNSIVRKLLQ 736

Query: 420 KGDIHKSA 427
           +GDI ++ 
Sbjct: 737 RGDITRAG 744



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 140/305 (45%), Gaps = 14/305 (4%)

Query: 174 AAFKIFREMPNRGC---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           AA   +  M   G    TP+  TYG LI   C  G++         +  K      + +T
Sbjct: 71  AAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 231 SLINGLCQSKSVEEAMRL-FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            L+ GLC  K   +AM +    M   G  PNVF+Y+ L+ GLC    S +A+ELLQMM  
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 290 KRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                 P++V+Y+T++NG  KEG L +A      M  +G+ P+   Y  II+  C     
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAM 250

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD 406
            +A   L  MV  G+ PN        R +N++V G C +  P  A      M +  +  D
Sbjct: 251 DKAMEVLTSMVKNGVMPN-------CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY+SL+   CK G   ++ ++ D +   G  P+  T+  ++     +  + +   LL 
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 467 LELMN 471
           L + N
Sbjct: 364 LMVRN 368



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 163/343 (47%), Gaps = 6/343 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V  A+  F+    E        N  ++ +I  L   +++  A++L
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDER---LSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C +    F SI   + +  R +++ ++FD M   G +P   +Y T++    
Sbjct: 467 ILEMLDRGIC-LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYC 525

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              ++  A +    M  +G++P   + N LI   CK S  M+ A  +FREM + G +PD 
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKIS-RMEDALVLFREMESSGVSPDI 584

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  ++ GL +  +   AKEL+  +        + TY  +++GLC++   +EA+R+F+ 
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQN 644

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +    ++    T++ ++  L K G + +A +L   + +    P++ TYS +   L ++G 
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGL 704

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           L+E  ++   M+  G   ++ +   I+      G    A  +L
Sbjct: 705 LEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T+S +I     A +   A  LL  +           + ++  GY ++ R  DA
Sbjct: 509 GVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+  G  P   +Y  +L  L +  +   A   Y  + E G Q  +++ N+++  
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN+ T D A ++F+ +       ++ T+  +I  L ++G+  EAK+LF  +      P
Sbjct: 629 LCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY+ +   L +   +EE   LF  M   G   N    +S++  L + G  ++A   L
Sbjct: 688 DVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             MI ++H     + ++L   L   GK QE
Sbjct: 748 -FMIDEKHFSLEASTASLFLDLLSGGKYQE 776



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 108/261 (41%), Gaps = 44/261 (16%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F E+  +    ++      +  + +  S   A+  +  M   G   V PN+ TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            L+   C  G        L  +I K  R + + ++ LL GLC + +  +A++I L RM  
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G  P+   Y  ++   CD  + QEA   L  M   G                    G C
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG--------------------GDC 195

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             D                    ++Y+++I  F K+GD+ K+     E++  G LP+  T
Sbjct: 196 PPD-------------------VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVT 236

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +++++ AL   + M +A E+L
Sbjct: 237 YNSIIAALCKAQAMDKAMEVL 257


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 234/441 (53%), Gaps = 16/441 (3%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           DV+ A+ + DS       G +    T++ ++  L    +F  A+++   +  ++C +  D
Sbjct: 207 DVDAAIALVDSMANR---GLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTM--DQCSVAPD 261

Query: 87  I--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           +  F  +  G+ RV    +A++ + +M+     P   S+  ++ +     ++  A  + R
Sbjct: 262 VRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLR 321

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M+ +G+ P      ++I   C+ +G+M  A ++  EM   GC PD  TY TL+NGLC+ 
Sbjct: 322 EMKGLGLVPDGVIYTMVIGGFCR-AGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQ 380

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            ++ +A++L  EME +  +P + T+T+LI+G C+  + E A++LF+ +  + + P+V TY
Sbjct: 381 HRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTY 440

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +SL+DG+C+ G  ++A EL   M ++   PN +TYS L++  C++G++++A   LD M  
Sbjct: 441 NSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVK 500

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +G  P+   Y  II  +C  G  ++   FL +M    + P+ +T+       NT++ G  
Sbjct: 501 KGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITF-------NTLIHGYI 553

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K +  + AF V+  M    +  D++TY+ +I  F ++G++  + R+   +   G  PD  
Sbjct: 554 KEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRY 613

Query: 444 TWSAVMTALWDRRKMRQAAEL 464
           T+ +++         +QA +L
Sbjct: 614 TYMSLINGHVTAGNSKQAFQL 634



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 168/320 (52%), Gaps = 7/320 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  G+ R     +A+RV D+M  FGC P   +Y T+L  L ++++L  A +    M
Sbjct: 334 IYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEM 393

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G+ P + +   LI   C+  G  + A ++F  +  +   PD  TY +LI+G+CR G 
Sbjct: 394 EERGVTPDLCTFTTLIHGYCRQ-GNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGD 452

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A EL+ +M  +   P  +TY+ LI+  C+   VE+A    +EM  KG  PN+ TY+S
Sbjct: 453 LAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNS 512

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G   +  + LQ M      P+++T++TL++G  KE  +  A  + + M+ + 
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM 572

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           ++PDA  Y  II+ F + G  Q+A      M   GI P+R T+   I  H T        
Sbjct: 573 VRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTA------G 626

Query: 387 DPNRAFQVYLSMRNRSISVD 406
           +  +AFQ++  M +R  + D
Sbjct: 627 NSKQAFQLHDEMIHRGFAPD 646



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 183/349 (52%), Gaps = 44/349 (12%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V + NVLI A  + +G +DAA  +   M NRG  P   TY +++ GLC+  +  +AKE
Sbjct: 190 PDVVTHNVLIDARFR-AGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKE 248

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL----- 267
           +F+ M+  + +P V ++  LI G C+   V+EA++ ++EM+ + V P+V ++S L     
Sbjct: 249 VFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFS 308

Query: 268 ----MD--------------------------GLCKGGCSSQAMELLQMMISKRHRPNIV 297
               MD                          G C+ G  S+A+ +   M+     P++V
Sbjct: 309 RRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVV 368

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+TLLNGLCK+ +L +A ++L+ M+ +G+ PD   +  +I  +C  G ++ A    D +
Sbjct: 369 TYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTL 428

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
           +   + P+ +T+       N+++ G+C K D  +A +++  M  R I  + +TYS LI  
Sbjct: 429 LRQRLRPDVVTY-------NSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDS 481

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            C+KG +  +   +DE+V  G LP+  T+++++        +++  + L
Sbjct: 482 HCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFL 530



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 187/382 (48%), Gaps = 15/382 (3%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT-VLAILVEENQLKLAFRFYRH 145
           +F  + R Y +  +P +A   F  + +    P P S    +LA+L       LA   YR 
Sbjct: 89  VFDLLIRTYTQSRKPREAFEAFRLLLDHRV-PVPASASNALLAVLSRAGWPHLAQEAYRL 147

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           +     +    +LN+++ + CK +   D A  +  EM  R   PD  T+  LI+   R G
Sbjct: 148 VLSSDSEVNAYTLNIMVHSYCK-TLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAG 206

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            +  A  L   M  +   P +VTY S++ GLC+ +  ++A  +F  M    V P+V +++
Sbjct: 207 DVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFN 266

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            L+ G C+ G   +A++  + M  +   P++V++S L+    + G++  A   L  MK  
Sbjct: 267 ILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGL 326

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GL PD  +Y  +I  FC  G   EA    DEMV  G  P+ +T+       NT++ GLCK
Sbjct: 327 GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTY-------NTLLNGLCK 379

Query: 386 TDPNR---AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
              +R   A ++   M  R ++ D  T+++LI  +C++G+   + ++ D L+     PD 
Sbjct: 380 Q--HRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDV 437

Query: 443 GTWSAVMTALWDRRKMRQAAEL 464
            T+++++  +  +  + +A EL
Sbjct: 438 VTYNSLIDGMCRKGDLAKANEL 459



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 156/314 (49%), Gaps = 9/314 (2%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           QP V   ++LI+   ++    +A F+ FR + +      +     L+  L R G  + A+
Sbjct: 86  QPQV--FDLLIRTYTQSRKPREA-FEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQ 142

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           E ++ + +        T   +++  C++   + A  +  EM  + V P+V T++ L+D  
Sbjct: 143 EAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDAR 202

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
            + G    A+ L+  M ++  +P IVTY+++L GLCK  +  +A E+   M    + PD 
Sbjct: 203 FRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDV 262

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRA 391
             +  +I  FC +G+ +EA  F  EM    +TP+ +++S  I + +       + + + A
Sbjct: 263 RSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSR------RGEMDHA 316

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
                 M+   +  D + Y+ +I  FC+ G + ++ R+ DE+V  GCLPD  T++ ++  
Sbjct: 317 GAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNG 376

Query: 452 LWDRRKMRQAAELL 465
           L  + ++  A +LL
Sbjct: 377 LCKQHRLLDAEKLL 390


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 229/450 (50%), Gaps = 30/450 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  T S +++    + +   A  L+D++ +         F ++  G    ++  +A
Sbjct: 148 GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + D+M + GC+P   +Y TV+  L +   + LA    + M +  I+  V   N +I  
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDG 267

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK    MD A  +F EM N+G  PD +TY +LI+ LC  G+  +A  L  +M  +  +P
Sbjct: 268 LCKYK-HMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINP 326

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVT+++LI+   +   + EA +L++EM  + ++P++FTYSSL++G C      +A  + 
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 386

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           ++MISK   PN+VTYSTL+ G CK  +++E +E+   M  +GL  +   Y  +I  F   
Sbjct: 387 ELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 446

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRIH 376
                A     +MV  G+ PN LT+++                             I  +
Sbjct: 447 RDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 506

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N +++G+CK       ++++ ++  + +S + + Y+++I+ FC+KG   ++  ++ ++  
Sbjct: 507 NIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKE 566

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           DG LP+ GT++ ++ A         +AEL+
Sbjct: 567 DGPLPNSGTYNTLIRARLRDGDREASAELI 596



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/422 (31%), Positives = 209/422 (49%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+  +++ L        A  LL ++ K K +    I+ +I  G  +     DA
Sbjct: 218 GCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDA 277

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M   G  P   +Y ++++ L    +   A R    M E  I P V + + LI A
Sbjct: 278 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 337

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G +  A K++ EM  R   PD +TY +LING C   ++ EAK +F+ M +K C P
Sbjct: 338 FVK-EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 396

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY++LI G C++K VEE M LF EM  +G+  N  TY++L+ G  +      A  + 
Sbjct: 397 NVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 456

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+S    PNI+TY+ LL+GLCK GKL +A+ + + ++   ++PD   Y  +I   C  
Sbjct: 457 KQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKA 516

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSI 403
           GK ++       + L G++PN + +       NT++ G C K     A  +   M+    
Sbjct: 517 GKVEDGWELFCNLSLKGVSPNVIAY-------NTMISGFCRKGSKEEADSLLKKMKEDGP 569

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +S TY++LI    + GD   SA ++ E+   G   D  T   V   L D R  +   +
Sbjct: 570 LPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLD 629

Query: 464 LL 465
           +L
Sbjct: 630 ML 631



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 190/359 (52%), Gaps = 9/359 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V  KM + G EP   +  ++L       ++  A      M E+G +P   +   LI 
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIH 196

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L  ++   +A   +  +M  RGC PD  TYGT++NGLC+ G I  A  L K+ME     
Sbjct: 197 GLFLHNKASEAV-ALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 255

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VV Y ++I+GLC+ K +++A+ LF EM +KG+ P+VFTYSSL+  LC  G  S A  L
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI ++  PN+VT+S L++   KEGKL EA ++ D M  + + PD   Y  +I+ FC 
Sbjct: 316 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 375

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
             +  EA +  + M+     PN +T+S       T+++G CK        +++  M  R 
Sbjct: 376 HDRLDEAKHMFELMISKDCFPNVVTYS-------TLIKGFCKAKRVEEGMELFREMSQRG 428

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +  +++TY++LI  F +  D   +  +  ++V  G  P+  T++ ++  L    K+ +A
Sbjct: 429 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKA 487



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 185/364 (50%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M +    P+   +  +L+ + + N+ +L       M+ +GI   + + ++ I
Sbjct: 66  DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI 125

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  PD  T  +L+NG C   +I +A  L  +M     
Sbjct: 126 NCFCRRS-QLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   T+T+LI+GL       EA+ L ++M  +G +P++ TY ++++GLCK G    A+ 
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M   +   ++V Y+T+++GLCK   + +A+ +   M  +G++PD   Y  +ISC C
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLC 304

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           + G++ +A+  L +M+   I PN +T+S        ++    K      A ++Y  M  R
Sbjct: 305 NYGRWSDASRLLSDMIERKINPNVVTFS-------ALIDAFVKEGKLVEAEKLYDEMIKR 357

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI  D  TYSSLI  FC    + ++  + + ++   C P+  T+S ++      +++ + 
Sbjct: 358 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEG 417

Query: 462 AELL 465
            EL 
Sbjct: 418 MELF 421



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 167/325 (51%), Gaps = 15/325 (4%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P +   N L+ A+ K +   +    +  +M   G + D YTY   IN  CR  ++  A  
Sbjct: 81  PSIVEFNKLLSAVAKMN-KFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALA 139

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +  +M      P +VT +SL+NG C SK + +A+ L ++M   G +P+ FT+++L+ GL 
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF 199

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
               +S+A+ L+  M+ +  +P++VTY T++NGLCK G +  A+ +L +M+   ++ D  
Sbjct: 200 LHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVV 259

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDP 388
           +Y  II   C      +A N   EM   GI P+  T+S       +++  LC     +D 
Sbjct: 260 IYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYS-------SLISCLCNYGRWSDA 312

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           +R       M  R I+ + +T+S+LI  F K+G + ++ ++ DE++     PD  T+S++
Sbjct: 313 SRLLS---DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 369

Query: 449 MTALWDRRKMRQAAELLLLELMNKC 473
           +       ++ +A  +  L +   C
Sbjct: 370 INGFCMHDRLDEAKHMFELMISKDC 394



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 160/308 (51%), Gaps = 9/308 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F +M      P    +  L++ + ++ K      L ++M+T   S  + TY+ 
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            IN  C+   +  A+ +  +M   G EP++ T SSL++G C     S A+ L+  M+   
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P+  T++TL++GL    K  EAV ++D+M  +G +PD   YG +++  C  G    A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           + L +M  G I  +       + I+NT++ GLCK    + A  ++  M N+ I  D  TY
Sbjct: 244 SLLKKMEKGKIEAD-------VVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTY 296

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           SSLI+C C  G    ++R++ +++     P+  T+SA++ A     K+ + AE L  E++
Sbjct: 297 SSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE-AEKLYDEMI 355

Query: 471 NKCVEAEV 478
            + ++ ++
Sbjct: 356 KRSIDPDI 363


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 121/403 (30%), Positives = 216/403 (53%), Gaps = 9/403 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R+D  TF+++I+      Q   A  +L ++ K   +       S+  G+ R +R  DA
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + DKM E G +P   +Y  ++  L +  ++  AF F++ +   GI+P V +   L+  
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC +S   DAA ++  +M  +  TP+  TY  L++   + GK+ EAKELF+EM   +  P
Sbjct: 235 LCNSSRWSDAA-RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP 293

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VTY+SLINGLC    ++EA ++F+ M SKG   +V +Y++L++G CK       M+L 
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 353

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +    N VTY+TL+ G  + G + +A E   +M   G+ PD   Y  ++   CD 
Sbjct: 354 REMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDN 413

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+ ++A    ++M        +    L I  + TV++G+CKT     A+ ++ S+  + +
Sbjct: 414 GELEKALVIFEDM-------QKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL 466

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             D +TY+++++  C KG +H+   +  ++  +G + ++ T S
Sbjct: 467 KPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 509



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 189/350 (54%), Gaps = 9/350 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  KM + G EP   +  +++      N++  A      M EIG +P + + N +I 
Sbjct: 139 ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIID 198

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK     DA F  F+E+  +G  P+  TY  L+NGLC   +  +A  L  +M  K  +
Sbjct: 199 SLCKTKRVNDA-FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKIT 257

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+TY++L++   ++  V EA  LFEEM    ++P++ TYSSL++GLC      +A ++
Sbjct: 258 PNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQM 317

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M+SK    ++V+Y+TL+NG CK  ++++ +++   M  +GL  +   Y  +I  F  
Sbjct: 318 FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 377

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G   +A  F  +M   GI+P+   W+     +N ++ GLC   +  +A  ++  M+ R 
Sbjct: 378 AGDVDKAQEFFSQMDFFGISPD--IWT-----YNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           + +D +TY+++I   CK G + ++  +   L L G  PD  T++ +M+ L
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 170/357 (47%), Gaps = 33/357 (9%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P +   N L+ A+ K     D    + ++M   G   D YT+  +IN  C   ++  A  
Sbjct: 83  PSIVDFNRLLSAIVKLK-KYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALS 141

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +  +M      P  VT  SL+NG C+   V +A+ L ++M   G +P++  Y++++D LC
Sbjct: 142 ILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC 201

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K    + A +  + +  K  RPN+VTY+ L+NGLC   +  +A  +L  M  + + P+  
Sbjct: 202 KTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 261

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS-------LHIRI---------- 375
            Y  ++  F   GK  EA    +EMV   I P+ +T+S       LH RI          
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321

Query: 376 -----------HNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                      +NT++ G CK        +++  M  R +  +++TY++LI  F + GD+
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
            K+     ++   G  PD  T++ ++  L D  ++ +A  L++ E M K  E ++DI
Sbjct: 382 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA--LVIFEDMQK-REMDLDI 435



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 145/296 (48%), Gaps = 10/296 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L++ + +L K      L K+ME       + T+  
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +IN  C    V  A+ +  +M   G EP+  T  SL++G C+    S A+ L+  M+   
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P+IV Y+ +++ LCK  ++ +A +    ++ +G++P+   Y  +++  C+  ++ +AA
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245

Query: 352 NFLDEMVLGGITPNRLTWS--LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT 409
             L +M+   ITPN +T+S  L   + N  V          A +++  M   SI  D +T
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVL--------EAKELFEEMVRMSIDPDIVT 297

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           YSSLI   C    I ++ ++ D +V  GCL D  +++ ++      +++    +L 
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 353



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 142/270 (52%), Gaps = 8/270 (2%)

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+ +A +LF +M      P++V +  L++ + + K  +  + L ++M   G+  +++T++
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            +++  C     S A+ +L  M+   + P+ VT  +L+NG C+  ++ +AV ++D+M   
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G KPD   Y  II   C   +  +A +F  E+   GI PN +T++        +V GLC 
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT-------ALVNGLCN 237

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +   + A ++   M  + I+ + +TYS+L+  F K G + ++  + +E+V     PD  T
Sbjct: 238 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 297

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           +S+++  L    ++ +A ++  L +   C+
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGCL 327


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 250/532 (46%), Gaps = 93/532 (17%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN 64
           ++ K    +T + V  L     D   AL  F+        GF+H+  ++S M++ L+ A 
Sbjct: 58  SLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALR--PGFKHNVHSYSSMLNILIRAR 115

Query: 65  QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124
               AE +   + K  C I + +F+            L+  R  +   EF  +PT + Y 
Sbjct: 116 LLGVAEKIRISMIKSCCSIEDVLFV------------LEVFRKMNADGEFKFKPTLRCYN 163

Query: 125 TVLA-----ILVEE----------NQLKLAFRFYRHMR--------------------EI 149
           T+L      +L++E          NQ+      +  M                     + 
Sbjct: 164 TILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQA 223

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G+ P   +   LI   C+N G +D A+++F  MP +GC  +  +Y  LI+GLC  G+I E
Sbjct: 224 GLHPDTFTYTSLILGHCRNKG-VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINE 282

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +LF +M    C PTV TYT LI  L  S    EA+ LF EM+ KG EPNV TY+ L+D
Sbjct: 283 ALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLID 342

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLCK     +A ++L  M  K   P++VTY+ L++G CKEG + +A EILD M+     P
Sbjct: 343 GLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGP 402

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-- 387
           +   Y ++I   C   K  +A   L++M+   ++P+ +T+       N+++ G CK +  
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITY-------NSLIHGQCKVNDL 455

Query: 388 ----------------PNR-AFQVYL-----------------SMRNRSISVDSLTYSSL 413
                           P++  + V++                 S++ + +  + + Y++L
Sbjct: 456 ESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTAL 515

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I  +CK G I  +  +++ ++ D CLP+  T++ ++  L   +KM++A+ L+
Sbjct: 516 IDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLV 567



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 208/422 (49%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I           A ++   + ++ C   E  + ++  G     R  +A
Sbjct: 224 GLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEA 283

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++F  M E  C PT ++Y  ++  L    +   A   +  M+E G +P V +  VLI  
Sbjct: 284 LKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDG 343

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +  MD A K+  EM  +G  P   TY  LI+G C+ G I +A E+   ME+ +C P
Sbjct: 344 LCKEN-KMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGP 402

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  LI GLC+ + V +AM L  +M  + + P++ TY+SL+ G CK      A  LL
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLL 462

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M      P+  TYS  ++ LCKEG+++EA  + D +K +G+K +  +Y  +I  +C +
Sbjct: 463 SLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKV 522

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSI 403
           GK   A + L+ M+     PN  T+       N +++GLCK    + A  +   M    +
Sbjct: 523 GKIDVAYSLLERMLNDACLPNSYTY-------NVLIEGLCKEKKMKEASSLVAKMLTMGV 575

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
               +TY+ LI    K G    + ++ + +V  G  PD  T++A + A + +  + +  +
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635

Query: 464 LL 465
           ++
Sbjct: 636 VI 637



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 125/514 (24%), Positives = 222/514 (43%), Gaps = 94/514 (18%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  +++ +I  L  A +   A  L   + ++ C  T   +  +        R ++A
Sbjct: 259 GCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEA 318

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F++MKE GCEP   +Y  ++  L +EN++  A +    M E G+ P V + N LI  
Sbjct: 319 LNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDG 378

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +D AF+I   M +  C P++ TY  LI GLC+  K+++A  L  +M  +  SP
Sbjct: 379 YCK-EGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSP 437

Query: 225 TVVTYTSLING-----------------------------------LCQSKSVEEAMRLF 249
           +++TY SLI+G                                   LC+   VEEA  LF
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 250 EEMRSKGVE-----------------------------------PNVFTYSSLMDGLCKG 274
           + +++KGV+                                   PN +TY+ L++GLCK 
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
               +A  L+  M++   +P +VTY+ L+  + K+G    A+++ + M   G +PD   Y
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------IHNTVVQGLCKTD 387
              +  +   G  +E  + + +M   GI P+ +T+++ I         H       C  D
Sbjct: 618 TAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD 677

Query: 388 PNRAFQVY--------LSMRNR------SISVDSLT--YSSLITCFCKKGDIHKSARIVD 431
                 +Y        LS  NR       I +DS++   S  I    K  +   + ++ +
Sbjct: 678 TGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFE 737

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++V  GC  D   + A++     + ++ +A  L+
Sbjct: 738 KMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLV 771



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 181/418 (43%), Gaps = 38/418 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T+S+ I  L    +   A  L D V  +     E I+ ++  GY +V +   
Sbjct: 468 NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDV 527

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  + ++M    C P   +Y  ++  L +E ++K A      M  +G++P V +  +LI 
Sbjct: 528 AYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIG 587

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            + K+ G  D A K+F  M + G  PD  TY   ++     G + E  ++  +M  +   
Sbjct: 588 EMLKD-GAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGIL 646

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG--------- 274
           P +VTYT LI+G  +      A    + M   G +P+++  S L+  L            
Sbjct: 647 PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSE 706

Query: 275 -GCSSQ-------------------AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G  S                    A++L + M+      ++  Y  L+ G C++ +L+E
Sbjct: 707 IGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEE 766

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A  ++  MK +G+ P   +Y  ++ C C +G Y EA   +D MV  G+ P   ++ L   
Sbjct: 767 AQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKL--- 823

Query: 375 IHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               +V GL     N +A  V+  + +   + D + +  LI    K+  + + + ++D
Sbjct: 824 ----LVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELID 877



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 157/328 (47%), Gaps = 25/328 (7%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           MGVK      T +T   ++  +  +   + AL +F+   +    G++ D  T++  +   
Sbjct: 573 MGVK-----PTVVTYTILIGEMLKDGAFDHALKVFNHMVSL---GYQPDVCTYTAFLHAY 624

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRV---HRPLDAMRVFDKMKEFG 115
            S       +D++ ++N+E   I  D+  +  +  GY R+   HR  D ++    M + G
Sbjct: 625 FSQGMLEEVDDVIAKMNEE--GILPDLVTYTVLIDGYARLGLTHRAFDFLKC---MVDTG 679

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C+P+      ++  L  EN++K          EIGI   V+++N +  A    +   + A
Sbjct: 680 CKPSLYIVSILIKNLSHENRMK------ETRSEIGID-SVSNVNSVDIADVWKTLEYEIA 732

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            K+F +M   GCT D   YG LI G C+  ++ EA+ L   M+ +  SP+   Y SL++ 
Sbjct: 733 LKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDC 792

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C+     EA+RL + M   G+ P + +Y  L+ GL   G + +A  +   ++S  +  +
Sbjct: 793 CCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYD 852

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            V +  L++GL K   + E  E++D M+
Sbjct: 853 EVAWKVLIDGLLKRDLVDECSELIDIME 880



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 137/354 (38%), Gaps = 66/354 (18%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  V +A  +FDS  A+   G + +   ++ +I       +   A  LL+R+  + C   
Sbjct: 487 EGRVEEAGTLFDSVKAK---GVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              +  +  G  +  +  +A  +  KM   G +PT  +Y  ++  ++++     A + + 
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603

Query: 145 HMREIGIQPCVASLNVLIKALCKNS----------------------------------G 170
           HM  +G QP V +    + A                                       G
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK------------------- 211
               AF   + M + GC P  Y    LI  L    ++ E +                   
Sbjct: 664 LTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADV 723

Query: 212 ----------ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
                     +LF++M    C+  V  Y +LI G CQ + +EEA  L   M+ +G+ P+ 
Sbjct: 724 WKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSE 783

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
             Y+SL+D  CK G  ++A+ L+  M+     P + +Y  L+ GL  EG  ++A
Sbjct: 784 DIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKA 837



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 1/207 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+++F+KM E GC      Y  ++A   ++ +L+ A     HM+E G+ P     N L+ 
Sbjct: 732 ALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLD 791

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G    A ++   M   G  P   +Y  L+ GL   G   +AK +F  + +   +
Sbjct: 792 CCCK-LGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYN 850

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              V +  LI+GL +   V+E   L + M  K          + +  L     +  A+E 
Sbjct: 851 YDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADIACAALMRLAAANSTKGALED 910

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEG 310
            ++     +   +   S L+N L   G
Sbjct: 911 HELRGLSVNHGELTQLSGLVNNLISVG 937



 Score = 44.7 bits (104), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 24/193 (12%)

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           + N+ +YS++LN             IL R +L G+     +   I SC C I    E   
Sbjct: 98  KHNVHSYSSMLN-------------ILIRARLLGVAEKIRI-SMIKSC-CSI----EDVL 138

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK---TDPNRAFQVYLSMRNRSISVDSLT 409
           F+ E+           +   +R +NT++  L K    D  +   VYL + N  IS +  T
Sbjct: 139 FVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKT--VYLELLNNQISPNIYT 196

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           +++++  +CK G++ ++     ++V  G  PD  T+++++      + +  A E+ L+  
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMP 256

Query: 470 MNKCVEAEVDIQN 482
              C   EV   N
Sbjct: 257 QKGCQRNEVSYTN 269


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 221/425 (52%), Gaps = 12/425 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDL-LDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           GFR D   F+ ++  L +  +   A D+ L R+ +  C      +  + +G    +R  +
Sbjct: 121 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE 180

Query: 104 AMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           A+ +   M + G  C P   SY TV+    +E  L  A+  Y  M + GI P V + + +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I ALCK +  MD A ++   M   G  P+  TY ++++G C  G+  EA    K+M +  
Sbjct: 241 IAALCK-AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVTY SL++ LC++    EA ++F+ M  +G++P + TY +L+ G    G   +  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL +M+     PN   +S L+    K+GK+ +A+ +  +M+ QGL PD   YG +I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  G+ ++A  + ++M+   ++P  +       ++N+++  LC  D  ++A ++ L M +
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNI-------VYNSLIHSLCIFDKWDKAKELILEMLD 472

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I +D++ ++S+I   CK+G + +S ++ D +V  G  PD  T+S ++       KM +
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 461 AAELL 465
           A +LL
Sbjct: 533 ATKLL 537



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 189/338 (55%), Gaps = 20/338 (5%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGL 201
           R M ++G  P V S N+L+K LC  + + +A  ++ + MP+ G  C PD  +Y T+ING 
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEA-LELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
            + G + +A   + EM  +   P VVTY+S+I  LC+++++++AM +   M   GV PN 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY+S++ G C  G   +A+  L+ M S    P++VTY++L++ LCK G+  EA ++ D 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  +GLKP+   YG ++  +   G   E    LD MV  GI PN   +S+ I  +    Q
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY--AKQ 387

Query: 382 GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           G  K D  +A  V+  MR + ++ D++TY ++I   CK G +  + R  ++++ +   P 
Sbjct: 388 G--KVD--QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443

Query: 442 EGTWSAVMTAL-----WDRRKMRQAAELLLLELMNKCV 474
              +++++ +L     WD+      A+ L+LE++++ +
Sbjct: 444 NIVYNSLIHSLCIFDKWDK------AKELILEMLDRGI 475



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 226/454 (49%), Gaps = 12/454 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++  +   + ++KA+ +    T+   NG   +  T++ ++    S+ Q + A   
Sbjct: 235 VTYSSIIAALCKAQAMDKAMEVL---TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L +++ +  +     + S+     +  R  +A ++FD M + G +P   +Y T+L     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L         M   GI P     ++LI A  K  G +D A  +F +M  +G  PD+ 
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ-GKVDQAMLVFSKMRQQGLNPDTV 410

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYGT+I  LC+ G++ +A   F++M  +  SP  + Y SLI+ LC     ++A  L  EM
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+  +   ++S++D  CK G   ++ +L  +M+    +P+I+TYSTL++G C  GK+
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L  M   G+KPD   Y  +I+ +C I + ++A     EM   G++P+ +T+   
Sbjct: 531 DEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY--- 587

Query: 373 IRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               N ++QGL +T    A  ++Y+ +      ++  TY+ ++   CK     ++ R+  
Sbjct: 588 ----NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQ 643

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            L L     +  T++ ++ AL    +  +A +L 
Sbjct: 644 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLF 677



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 195/436 (44%), Gaps = 46/436 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           +FDS T     G + + +T+  ++    +         LLD + +        +F  +  
Sbjct: 326 MFDSMTKR---GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +   AM VF KM++ G  P   +Y TV+ IL +  +++ A R++  M +  + P
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 154 CVASLNVLIKALC----------------KNSGTMDAAF------------------KIF 179
                N LI +LC                     +D  F                  K+F
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  PD  TY TLI+G C  GK+ EA +L   M +    P  VTY +LING C+ 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +E+A+ LF EM S GV P++ TY+ ++ GL +   ++ A EL   +     +  + TY
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     EA+ +   + L  L+ +   +  +I     +G+  EA +    +  
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G+ P+  T+SL     N + QGL +        ++LSM     + +S   +S++    +
Sbjct: 683 NGLVPDVRTYSL--MAENLIEQGLLEE----LDDLFLSMEENGCTANSRMLNSIVRKLLQ 736

Query: 420 KGDIHKSAR---IVDE 432
           +GDI ++     ++DE
Sbjct: 737 RGDITRAGTYLFMIDE 752



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 140/305 (45%), Gaps = 14/305 (4%)

Query: 174 AAFKIFREMPNRGC---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           AA   +  M   G    TP+  TYG LI   C  G++         +  K      + +T
Sbjct: 71  AAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 231 SLINGLCQSKSVEEAMRL-FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            L+ GLC  K   +AM +    M   G  PNVF+Y+ L+ GLC    S +A+ELLQMM  
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 290 KRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                 P++V+Y+T++NG  KEG L +A      M  +G+ P+   Y  II+  C     
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD 406
            +A   L  MV  G+ PN        R +N++V G C +  P  A      M +  +  D
Sbjct: 251 DKAMEVLTSMVKNGVMPN-------CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY+SL+   CK G   ++ ++ D +   G  P+  T+  ++     +  + +   LL 
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 467 LELMN 471
           L + N
Sbjct: 364 LMVRN 368



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+S +I     A +   A  LL  +           + ++  GY ++ R  DA
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+  G  P   +Y  +L  L +  +   A   Y  + E G Q  +++ N+++  
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN+ T D A ++F+ +       ++ T+  +I  L ++G+  EAK+LF  +      P
Sbjct: 629 LCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY+ +   L +   +EE   LF  M   G   N    +S++  L + G  ++A   L
Sbjct: 688 DVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             MI ++H     + ++L   L   GK QE
Sbjct: 748 -FMIDEKHFSLEASTASLFLDLLSGGKYQE 776



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 108/261 (41%), Gaps = 44/261 (16%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F E+  +    ++      +  + +  S   A+  +  M   G   V PN+ TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            L+   C  G        L  +I K  R + + ++ LL GLC + +  +A++I L RM  
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G  P+   Y  ++   CD  + QEA   L  M   G                    G C
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG--------------------GDC 195

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             D                    ++Y+++I  F K+GD+ K+     E++  G LP+  T
Sbjct: 196 PPD-------------------VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVT 236

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S+++ AL   + M +A E+L
Sbjct: 237 YSSIIAALCKAQAMDKAMEVL 257


>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 484

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 230/474 (48%), Gaps = 42/474 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSAKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   +  VLI      SG ++ A + F +M +R  +PD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRXTFXVLIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K  EA++ F EM+ +   PTVVTYT+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN   YS+L+ GLC     S+A  +L+ M+ K   P +   +  L+   CK G L  A 
Sbjct: 252 KPNAIXYSTLLPGLCNAEKMSEARSILKEMMDKYLAPTDNSIFMRLITSQCKSGNLDAAS 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N +++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPMIEYLCNNGQAAKAETLVRQLLKWGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            R +  +   Y SL+  + KK +   +   +D ++ +  LPD   + +VM +L+
Sbjct: 431 RRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMIENDHLPDSALFRSVMESLF 484



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 163/347 (46%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ +LF++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKQGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T+  L+ G    G    A    + M S+   P++VTY+T++NG  +  K +EA + 
Sbjct: 148 PTRXTFXVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKXEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A   ++EM   GI PN + +S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIXYS-------T 260

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +  + A  +   M ++ ++  D+  +  LIT  CK G++  ++ ++  ++  
Sbjct: 261 LLPGLCNAEKMSEARSILKEMMDKYLAPTDNSIFMRLITSQCKSGNLDAASDVLKAMIRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  QA +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKAGQYDQAVKLL-----DKLIEKDIILRPQ 362


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 221/425 (52%), Gaps = 12/425 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDL-LDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           GFR D   F+ ++  L +  +   A D+ L R+ +  C      +  + +G    +R  +
Sbjct: 121 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE 180

Query: 104 AMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           A+ +   M + G  C P   SY TV+    +E  L  A+  Y  M + GI P V + + +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I ALCK +  MD A ++   M   G  P+  TY ++++G C  G+  EA    K+M +  
Sbjct: 241 IAALCK-AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVTY SL++ LC++    EA ++F+ M  +G++P + TY +L+ G    G   +  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL +M+     PN   +S L+    K+GK+ +A+ +  +M+ QGL PD   YG +I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  G+ ++A  + ++M+   ++P  +       ++N+++  LC  D  ++A ++ L M +
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNI-------VYNSLIHSLCIFDKWDKAKELILEMLD 472

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I +D++ ++S+I   CK+G + +S ++ D +V  G  PD  T+S ++       KM +
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 461 AAELL 465
           A +LL
Sbjct: 533 ATKLL 537



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 188/333 (56%), Gaps = 10/333 (3%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGL 201
           R M ++G  P V S N+L+K LC  + + +A  ++ + MP+ G  C PD  +Y T+ING 
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEA-LELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
            + G + +A   + EM  +   P VVTY+S+I  LC+++++++AM +   M   GV PN 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY+S++ G C  G   +A+  L+ M S    P++VTY++L++ LCK G+  EA ++ D 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  +GLKP+   YG ++  +   G   E    LD MV  GI PN   +S+ I  +    Q
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY--AKQ 387

Query: 382 GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           G  K D  +A  V+  MR + ++ D++TY ++I   CK G +  + R  ++++ +   P 
Sbjct: 388 G--KVD--QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
              +++++ +L    K  +A E L+LE++++ +
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKE-LILEMLDRGI 475



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 226/454 (49%), Gaps = 12/454 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++  +   + ++KA+ +    T+   NG   +  T++ ++    S+ Q + A   
Sbjct: 235 VTYSSIIAALCKAQAMDKAMEVL---TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L +++ +  +     + S+     +  R  +A ++FD M + G +P   +Y T+L     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L         M   GI P     ++LI A  K  G +D A  +F +M  +G  PD+ 
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ-GKVDQAMLVFSKMRQQGLNPDTV 410

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYGT+I  LC+ G++ +A   F++M  +  SP  + Y SLI+ LC     ++A  L  EM
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+  +   ++S++D  CK G   ++ +L  +M+    +P+I+TYSTL++G C  GK+
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L  M   G+KPD   Y  +I+ +C I + ++A     EM   G++P+ +T+   
Sbjct: 531 DEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY--- 587

Query: 373 IRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               N ++QGL +T    A  ++Y+ +      ++  TY+ ++   CK     ++ R+  
Sbjct: 588 ----NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQ 643

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            L L     +  T++ ++ AL    +  +A +L 
Sbjct: 644 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLF 677



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 191/428 (44%), Gaps = 43/428 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           +FDS T     G + + +T+  ++    +         LLD + +        +F  +  
Sbjct: 326 MFDSMTKR---GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +   AM VF KM++ G  P   +Y TV+ IL +  +++ A R++  M +  + P
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 154 CVASLNVLIKALC----------------KNSGTMDAAF------------------KIF 179
                N LI +LC                     +D  F                  K+F
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  PD  TY TLI+G C  GK+ EA +L   M +    P  VTY +LING C+ 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +E+A+ LF EM S GV P++ TY+ ++ GL +   ++ A EL   +     +  + TY
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     EA+ +   + L  L+ +   +  +I     +G+  EA +    +  
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G+ P+  T+SL     N + QGL +        ++LSM     + +S   +S++    +
Sbjct: 683 NGLVPDVRTYSL--MAENLIEQGLLEE----LDDLFLSMEENGCTANSRMLNSIVRKLLQ 736

Query: 420 KGDIHKSA 427
           +GDI ++ 
Sbjct: 737 RGDITRAG 744



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 140/305 (45%), Gaps = 14/305 (4%)

Query: 174 AAFKIFREMPNRGC---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           AA   +  M   G    TP+  TYG LI   C  G++         +  K      + +T
Sbjct: 71  AAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 231 SLINGLCQSKSVEEAMRL-FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            L+ GLC  K   +AM +    M   G  PNVF+Y+ L+ GLC    S +A+ELLQMM  
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 290 KRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                 P++V+Y+T++NG  KEG L +A      M  +G+ P+   Y  II+  C     
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD 406
            +A   L  MV  G+ PN        R +N++V G C +  P  A      M +  +  D
Sbjct: 251 DKAMEVLTSMVKNGVMPN-------CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY+SL+   CK G   ++ ++ D +   G  P+  T+  ++     +  + +   LL 
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 467 LELMN 471
           L + N
Sbjct: 364 LMVRN 368



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 163/343 (47%), Gaps = 6/343 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V  A+  F+    E        N  ++ +I  L   +++  A++L
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDER---LSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C +    F SI   + +  R +++ ++FD M   G +P   +Y T++    
Sbjct: 467 ILEMLDRGIC-LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              ++  A +    M  +G++P   + N LI   CK S  M+ A  +FREM + G +PD 
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKIS-RMEDALVLFREMESSGVSPDI 584

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  ++ GL +  +   AKEL+  +        + TY  +++GLC++   +EA+R+F+ 
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQN 644

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +    ++    T++ ++  L K G + +A +L   + +    P++ TYS +   L ++G 
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGL 704

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           L+E  ++   M+  G   ++ +   I+      G    A  +L
Sbjct: 705 LEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+S +I     A +   A  LL  +           + ++  GY ++ R  DA
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+  G  P   +Y  +L  L +  +   A   Y  + E G Q  +++ N+++  
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN+ T D A ++F+ +       ++ T+  +I  L ++G+  EAK+LF  +      P
Sbjct: 629 LCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY+ +   L +   +EE   LF  M   G   N    +S++  L + G  ++A   L
Sbjct: 688 DVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             MI ++H     + ++L   L   GK QE
Sbjct: 748 -FMIDEKHFSLEASTASLFLDLLSGGKYQE 776



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 108/261 (41%), Gaps = 44/261 (16%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F E+  +    ++      +  + +  S   A+  +  M   G   V PN+ TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            L+   C  G        L  +I K  R + + ++ LL GLC + +  +A++I L RM  
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G  P+   Y  ++   CD  + QEA   L  M   G                    G C
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG--------------------GDC 195

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             D                    ++Y+++I  F K+GD+ K+     E++  G LP+  T
Sbjct: 196 PPD-------------------VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVT 236

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S+++ AL   + M +A E+L
Sbjct: 237 YSSIIAALCKAQAMDKAMEVL 257


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 217/418 (51%), Gaps = 12/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D   ++ M++      Q   A  L+  +  E    T +  +    G GR     +A+ V 
Sbjct: 123 DVMAYNAMVAGYCVTGQLDAARRLVADMPMEPDSYTYNTLIRGLCGRGRTG---NALVVL 179

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D M   GC P   +Y  +L    + +  K A +    MR  G  P + + NV++  +C+ 
Sbjct: 180 DDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQE 239

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D A +  + +P+ GC P++ +Y  ++ GLC   +  +A++L  EM  K   P VVT
Sbjct: 240 -GRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVT 298

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  LI+ LC+   VE AM + +++   G  PN  +Y+ ++   CK     +AM  +++M+
Sbjct: 299 FNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMV 358

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+   P+IV+Y+TLL  LC+ G++  AVE+L ++K +G  P    Y  +I      GK +
Sbjct: 359 SRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTK 418

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           EA   L+EMV  G+ P+ +T+S       T+  GLC+ D    A + +  +++  I  ++
Sbjct: 419 EALELLNEMVTKGLQPDIITYS-------TISSGLCREDRIEEAIRAFCKVQDMGIRPNT 471

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + Y++++   CK+ + H +  +   ++ +GC+P+E T++ ++  L     +++A ELL
Sbjct: 472 VLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELL 529



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 192/359 (53%), Gaps = 14/359 (3%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDI 87
           ALV+ D        G   D  T+++++      + ++ A  LLD +  + C    IT ++
Sbjct: 175 ALVVLDDM---LRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNV 231

Query: 88  FLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            ++ IC+  GRV    DA+     +   GCEP   SY  VL  L    + + A +    M
Sbjct: 232 VVNGICQ-EGRVD---DAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEM 287

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            + G  P V + N+LI  LC+  G ++ A ++  ++P  GCTP+S +Y  +++  C+  K
Sbjct: 288 SQKGYPPNVVTFNMLISFLCRR-GLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKK 346

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A    + M ++ C P +V+Y +L+  LC+   V+ A+ L  +++ KG  P + +Y++
Sbjct: 347 MDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNT 406

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++DGL K G + +A+ELL  M++K  +P+I+TYST+ +GLC+E +++EA+    +++  G
Sbjct: 407 VIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMG 466

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           ++P+  LY  I+   C   +   A +    M+  G  PN  T++  I I     +GL K
Sbjct: 467 IRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYT--ILIEGLTYEGLVK 523



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 179/328 (54%), Gaps = 13/328 (3%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P V + N ++   C  +G +DAA ++  +MP     PDSYTY TLI GLC  G+   A 
Sbjct: 121 EPDVMAYNAMVAGYCV-TGQLDAARRLVADMPME---PDSYTYNTLIRGLCGRGRTGNAL 176

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
            +  +M  + C P VVTYT L+   C+    ++AM+L +EMR+KG  P++ TY+ +++G+
Sbjct: 177 VVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGI 236

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
           C+ G    A+E L+ + S    PN V+Y+ +L GLC   + ++A +++  M  +G  P+ 
Sbjct: 237 CQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNV 296

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NR 390
             +  +IS  C  G  + A   LD++   G TPN L++       N ++   CK    +R
Sbjct: 297 VTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSY-------NPILHAFCKQKKMDR 349

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A      M +R    D ++Y++L+T  C+ G++  +  ++ +L   GC P   +++ V+ 
Sbjct: 350 AMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVID 409

Query: 451 ALWDRRKMRQAAELLLLELMNKCVEAEV 478
            L    K ++A E LL E++ K ++ ++
Sbjct: 410 GLTKAGKTKEALE-LLNEMVTKGLQPDI 436



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 189/377 (50%), Gaps = 11/377 (2%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           LDA R    + +   EP   +Y T++  L    +   A      M   G  P V +  +L
Sbjct: 140 LDAARRL--VADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTIL 197

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           ++A CK SG    A K+  EM  +GC PD  TY  ++NG+C+ G++ +A E  K + +  
Sbjct: 198 LEATCKRSG-YKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHG 256

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P  V+Y  ++ GLC ++  E+A +L  EM  KG  PNV T++ L+  LC+ G    AM
Sbjct: 257 CEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAM 316

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           E+L  +      PN ++Y+ +L+  CK+ K+  A+  ++ M  +G  PD   Y  +++  
Sbjct: 317 EVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTAL 376

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRN 400
           C  G+   A   L ++   G TP  +++       NTV+ GL K    + A ++   M  
Sbjct: 377 CRGGEVDAAVELLHQLKDKGCTPVLISY-------NTVIDGLTKAGKTKEALELLNEMVT 429

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + +  D +TYS++ +  C++  I ++ R   ++   G  P+   ++A++  L  RR+   
Sbjct: 430 KGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHN 489

Query: 461 AAELLLLELMNKCVEAE 477
           A +L +  + N C+  E
Sbjct: 490 AIDLFIYMISNGCMPNE 506



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 156/302 (51%), Gaps = 18/302 (5%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G ++ A ++   M     +        LI  LC  G+  EA+ +       AC P V+ Y
Sbjct: 73  GDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRTAEARRVLA-----ACEPDVMAY 127

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            +++ G C +  ++ A RL  +M    +EP+ +TY++L+ GLC  G +  A+ +L  M+ 
Sbjct: 128 NAMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLR 184

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           +   P++VTY+ LL   CK    ++A+++LD M+ +G  PD   Y  +++  C  G+  +
Sbjct: 185 RGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDD 244

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A  FL  +   G  PN +++       N V++GLC  +    A ++   M  +    + +
Sbjct: 245 AIEFLKSLPSHGCEPNTVSY-------NIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVV 297

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           T++ LI+  C++G +  +  ++D++   GC P+  +++ ++ A   ++KM +A  +  +E
Sbjct: 298 TFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRA--MAFVE 355

Query: 469 LM 470
           LM
Sbjct: 356 LM 357


>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
 gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
 gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 506

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 234/458 (51%), Gaps = 15/458 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+    + L++ E+D    L IF+ A+ +   GF H+N+T+S+++  LV   +F   + +
Sbjct: 54  ISHESAVSLMKRERDPQGVLDIFNKASQQ--KGFNHNNATYSVLLDNLVRHKKFLAVDAI 111

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG-CEPTPKSYITVLAILV 131
           L ++  E C   E +FL++ R + R       M +F+ ++     +P+  +  T L +L+
Sbjct: 112 LHQMKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLI 171

Query: 132 EENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT-P 189
           +  ++ L+ +   + +  +G+QP     N+L+K  CKN G ++ AF +  EM   G + P
Sbjct: 172 DSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKN-GDINFAFLVVEEMKRSGISYP 230

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           +S TY TL++ L    +  EA ELF++M +K   SP  VT+  +ING C++  VE A ++
Sbjct: 231 NSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKI 290

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            + M+  G  PNV+ YS+LM+G CK G   +A +    +     + + V Y+TL+N  C+
Sbjct: 291 LDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCR 350

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G+  EA+++L  MK    + D   Y  I+      G+ +EA   LD+    G+  N+ +
Sbjct: 351 NGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGS 410

Query: 369 WSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           + +       ++  LC   +  +A +    M  R I     T++ L+   C+ G      
Sbjct: 411 YRI-------ILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTEIGV 463

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           R++   +  G +P   +W AV+ ++   RK+    ELL
Sbjct: 464 RVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELL 501



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 139/319 (43%), Gaps = 38/319 (11%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           ++   +   IT + ++  + A     +A+ +F+   ++   G   D  TF++MI+    A
Sbjct: 224 RSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISK--EGISPDPVTFNVMINGFCRA 281

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
            +   A+ +LD + K  C+     + ++  G+ +V +  +A + FD++K+ G +     Y
Sbjct: 282 GEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGY 341

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
            T                                   L+   C+N G  D A K+  EM 
Sbjct: 342 TT-----------------------------------LMNCFCRN-GETDEAMKLLGEMK 365

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
              C  D+ TY  ++ GL   G+  EA ++  +  ++       +Y  ++N LC +  +E
Sbjct: 366 ASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELE 425

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           +A++    M  +G+ P+  T++ L+  LC+ G +   + +L   +     P   ++  ++
Sbjct: 426 KAVKFLSVMSERGIWPHHATWNELVVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVV 485

Query: 304 NGLCKEGKLQEAVEILDRM 322
             +CKE KL    E+LD +
Sbjct: 486 ESICKERKLVHVFELLDSL 504


>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
 gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 240/466 (51%), Gaps = 15/466 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+    + LI+ E+D   AL IF+    +   GF H+++T+S +I KL  A +F+  + L
Sbjct: 48  ISHETAVNLIKHERDPQHALEIFNLVVEQ--KGFNHNHATYSTIIDKLARAKKFQAVDAL 105

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE-PTPKSYITVLAILV 131
           L ++  E C   E +FL++ + + +       + +F+K++    E P+ K+  T L +LV
Sbjct: 106 LRQMMYETCKFHESLFLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSLKAISTCLNLLV 165

Query: 132 EENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT-P 189
           E  Q+ L   F   + ++  ++P     N+ IK  CK SG +++AF + +EM     + P
Sbjct: 166 ESKQVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYHCK-SGDLESAFAVVKEMKKSSISYP 224

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           +  TY TL++GLC  G++ EA ELF+EM +K    P  +TY  LING      V+ A ++
Sbjct: 225 NLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKI 284

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            E M+S G  PNVF YS+LM G CK G   +AM+  + M     + + V Y+ L+N  C+
Sbjct: 285 MEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCR 344

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G++ EA+ +L+ MK    K D      ++  FC  G+ +EA   L+ +   GI  N+ +
Sbjct: 345 FGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYLNKAS 404

Query: 369 WSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           + +       V+  LC K D ++A ++     +R       T + L+   CK G    + 
Sbjct: 405 YRI-------VLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMADDAV 457

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             +  L   G  P++ +W+ ++  +   RK+  A ELL     N+C
Sbjct: 458 VALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDELTANEC 503



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 5/168 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
            CR +GR+    +AM + ++MKE  C+    +   +L     E + + A      +   G
Sbjct: 342 FCR-FGRID---EAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEG 397

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I    AS  +++ +LC+  G +D A ++     +RG  P   T   L+ GLC+ G   +A
Sbjct: 398 IYLNKASYRIVLNSLCQK-GDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMADDA 456

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
                 +      P   ++  L+  +C+ + +  A  L +E+ +   E
Sbjct: 457 VVALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDELTANECE 504


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 227/436 (52%), Gaps = 10/436 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            NG   D  T++ +I           A ++++ +  +    +   + +I  G  +  R  
Sbjct: 146 GNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYA 205

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  +  +M   G  P   +Y T+L      +    A   +  M   G+ P + S + LI
Sbjct: 206 RAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLI 265

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               +N   +D A   FR+M   G  PD+  Y  L++G CR G + EA ++  EM  + C
Sbjct: 266 AVFSRNR-HLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGC 324

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              V+ Y +++NGLC+ K + +A +LF+EM  +G  P+ +T+++L+ G C+ G  ++A+ 
Sbjct: 325 VLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALS 384

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M  +  +P+IV Y+TL++G CK G++++A E+ D M  + + P+   YG +I+ +C
Sbjct: 385 LFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYC 444

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
            +G   EA    D M+  GI P  +T        NTV++G C++ D ++A +    M  +
Sbjct: 445 SVGHVSEAFRLWDVMIEKGIKPTLVTC-------NTVIKGYCRSGDSSKADEFLGRMIAK 497

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            ++ D ++Y++LI  F ++ ++ K+   ++++  +G LPD  T++ VM     + +M Q 
Sbjct: 498 GVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRM-QE 556

Query: 462 AELLLLELMNKCVEAE 477
           AEL+L +++ K +  +
Sbjct: 557 AELVLRKMIEKGINPD 572



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 190/360 (52%), Gaps = 9/360 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +F +M   G  P   S+ +++A+      L  A  ++R M++ G+ P      VL+
Sbjct: 241 EAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLM 300

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+N G M  A KI  EM  +GC  D   Y T++NGLC+   + +A +LF EM  +  
Sbjct: 301 HGYCRN-GNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGA 359

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   T+T+LI+G CQ  ++ +A+ LF  M  + ++P++  Y++L+DG CK G   +A E
Sbjct: 360 LPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASE 419

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   MIS++  PN +TY  L+N  C  G + EA  + D M  +G+KP       +I  +C
Sbjct: 420 LWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYC 479

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G   +A  FL  M+  G+ P+ +++       NT++ G  + D  ++AF     M   
Sbjct: 480 RSGDSSKADEFLGRMIAKGVAPDHISY-------NTLINGFVREDNMDKAFLWINKMEKE 532

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D +TY+ ++  FC++G + ++  ++ +++  G  PD  T++A++     +  + +A
Sbjct: 533 GLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEA 592



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 174/322 (54%), Gaps = 7/322 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  GY R    L+A+++ D+M E GC     +Y T+L  L +E  L  A + +  M
Sbjct: 295 IYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEM 354

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G  P   +   LI   C++ G M  A  +F  M  R   PD   Y TLI+G C++G+
Sbjct: 355 VERGALPDFYTFTTLIHGHCQD-GNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGE 413

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A EL+  M ++   P  +TY  LIN  C    V EA RL++ M  KG++P + T ++
Sbjct: 414 MEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNT 473

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G SS+A E L  MI+K   P+ ++Y+TL+NG  +E  + +A   +++M+ +G
Sbjct: 474 VIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEG 533

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L PD   Y  +++ FC  G+ QEA   L +M+  GI P+R T++  I  H T      + 
Sbjct: 534 LLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVT------QD 587

Query: 387 DPNRAFQVYLSMRNRSISVDSL 408
           + N AF+ +  M  R  + D +
Sbjct: 588 NLNEAFRFHDEMLQRGFAPDDV 609



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 44/408 (10%)

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
            C     +F  + R Y +  +  +    F  ++  G   +  +  ++L  LV+ + ++LA
Sbjct: 43  NCGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELA 102

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNS------------------------------ 169
           +  +R +   GI+  V +LN+++ ALCK+                               
Sbjct: 103 WEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGA 162

Query: 170 ----GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
               G ++ AF+I   M ++G  P  +TY  +INGLC+ G+   AK +  EM     SP 
Sbjct: 163 YCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPD 222

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             TY +L+   C+  +  EA  +F EM  +GV P++ ++SSL+    +     QA+   +
Sbjct: 223 TTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFR 282

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M      P+ V Y+ L++G C+ G + EA++I D M  QG   D   Y  I++  C   
Sbjct: 283 DMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEK 342

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN--RAFQVYLSMRNRSI 403
              +A    DEMV  G  P+  T++       T++ G C+ D N  +A  ++ +M  R+I
Sbjct: 343 MLTDADKLFDEMVERGALPDFYTFT-------TLIHGHCQ-DGNMTKALSLFGTMTQRNI 394

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             D + Y++LI  FCK G++ K++ + D ++     P+  T+  ++ A
Sbjct: 395 KPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINA 442



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 166/336 (49%), Gaps = 9/336 (2%)

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V+  +L+     +R +R  G    + + N L+  L K    ++ A+++ RE+   G   +
Sbjct: 59  VQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKID-WVELAWEVHREVVRSGIELN 117

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YT   ++N LC+ GK  + K    EME       +VTY +LI   C+   +EEA  +  
Sbjct: 118 VYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMN 177

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            M  KG++P++FTY+++++GLCK G  ++A  +L  M++    P+  TY+TLL   C+  
Sbjct: 178 SMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRD 237

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
              EA EI   M  QG+ PD   +  +I+ F       +A  +  +M   G+ P+ +   
Sbjct: 238 NFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNV--- 294

Query: 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
               I+  ++ G C+  +   A ++   M  +   +D + Y++++   CK+  +  + ++
Sbjct: 295 ----IYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKL 350

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            DE+V  G LPD  T++ ++        M +A  L 
Sbjct: 351 FDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLF 386



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 154/332 (46%), Gaps = 27/332 (8%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           R +R  G+   V  +  L+ ++C N GT +  F +                  LI    +
Sbjct: 20  RMIRRSGVSR-VEVVEALVSSMCGNCGTNNLVFDL------------------LIRTYVQ 60

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
             K+ E  E F+ + +K    ++    SL+ GL +   VE A  +  E+   G+E NV+T
Sbjct: 61  ARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYT 120

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            + +++ LCK G        L  M       ++VTY+TL+   C+EG L+EA EI++ M 
Sbjct: 121 LNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMA 180

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            +GLKP    Y  II+  C  G+Y  A   L EM+  G++P+  T+       NT++   
Sbjct: 181 DKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTY-------NTLLVES 233

Query: 384 CKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C+ D  + A +++  M  + +  D +++SSLI  F +   + ++     ++   G +PD 
Sbjct: 234 CRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDN 293

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             ++ +M        M +A ++    L   CV
Sbjct: 294 VIYTVLMHGYCRNGNMLEALKIRDEMLEQGCV 325


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 201/369 (54%), Gaps = 10/369 (2%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H P  A+ +F +M+  G EP   +   ++       Q+  +F     + ++G QP   +L
Sbjct: 25  HYP-TAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITL 83

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N L+K LC   G +  +     ++  +G   D  +Y TL+NGLC++G+   A +L + +E
Sbjct: 84  NTLMKGLCL-KGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIE 142

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            ++  P VV Y ++I+GLC+ K V EA  L+ EM ++G+ PNV TYS+L+ G C  G   
Sbjct: 143 DRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLM 202

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A  LL  MI K   PN+ TY+ L++ LCKEGK++EA  +L  M  +G+KP+   Y  ++
Sbjct: 203 EAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLM 262

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
             +C IG+ Q A      MV  G+ PN  ++       N ++  LCK+   + A  +   
Sbjct: 263 DGYCLIGEVQNAKQMFHTMVQKGVNPNVYSY-------NIMIDRLCKSKRVDEAMNLLRE 315

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           + ++++  +++TYSSLI  FCK G I  +  ++ E+   G   D  T+++++ AL   + 
Sbjct: 316 VLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQN 375

Query: 458 MRQAAELLL 466
           + +A  L +
Sbjct: 376 LDKATALFM 384



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 219/422 (51%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ +  T + ++  L    + + +    D+V  +   + +  + ++  G  ++     A
Sbjct: 75  GYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSA 134

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++   +++    P    Y T++  L ++  +  A+  Y  M   GI P V + + LI  
Sbjct: 135 LKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYG 194

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C  +G +  AF +  EM  +   P+ YTY  L++ LC+ GK+ EAK L   M  +   P
Sbjct: 195 FCL-AGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKP 253

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV+Y +L++G C    V+ A ++F  M  KGV PNV++Y+ ++D LCK     +AM LL
Sbjct: 254 NVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLL 313

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + ++ K   PN VTYS+L++G CK G++  A+++L  M  +G   D   Y  ++   C  
Sbjct: 314 REVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKN 373

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSI 403
               +A     +M   GI PN+ T++        ++ GLCK   ++ A +++  +  +  
Sbjct: 374 QNLDKATALFMKMKERGIQPNKYTYT-------ALIDGLCKGGRHKNAQKLFQHLLVKGC 426

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            ++  TY+ +I+  CK+G + ++  +  ++  +GC+PD  T+  ++ +L+++ +  +A +
Sbjct: 427 RINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEK 486

Query: 464 LL 465
           LL
Sbjct: 487 LL 488



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 186/337 (55%), Gaps = 10/337 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKC 81
           +K VN+A   +D  +   A G   +  T+S +I     A Q   A  LL+ +   N    
Sbjct: 163 DKLVNEA---YDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPN 219

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
             T  I +      G+V    + + V   M + G +P   SY T++       +++ A +
Sbjct: 220 VYTYTILMDALCKEGKVKEAKNLLAV---MTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQ 276

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            +  M + G+ P V S N++I  LCK S  +D A  + RE+ ++   P++ TY +LI+G 
Sbjct: 277 MFHTMVQKGVNPNVYSYNIMIDRLCK-SKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGF 335

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+LG+I  A +L KEM  +     VVTYTSL++ LC+++++++A  LF +M+ +G++PN 
Sbjct: 336 CKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNK 395

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
           +TY++L+DGLCKGG    A +L Q ++ K  R N+ TY+ +++GLCKEG L EA+ +  +
Sbjct: 396 YTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSK 455

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           M+  G  PDA  +  II    +  +  +A   L EM+
Sbjct: 456 MEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMI 492



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 132/263 (50%), Gaps = 8/263 (3%)

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           TP    +  ++  L ++     A  LFK+M+ K   P + T   LIN  C    +  +  
Sbjct: 7   TPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFT 66

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +  ++   G +PN  T ++LM GLC  G   +++     ++++  + + V+Y+TLLNGLC
Sbjct: 67  VLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLC 126

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K G+ + A+++L  ++ +  +P+  +Y  II   C      EA +   EM   GI PN +
Sbjct: 127 KIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVI 186

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+S       T++ G C       AF +   M  ++I+ +  TY+ L+   CK+G + ++
Sbjct: 187 TYS-------TLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEA 239

Query: 427 ARIVDELVLDGCLPDEGTWSAVM 449
             ++  +  +G  P+  +++ +M
Sbjct: 240 KNLLAVMTKEGVKPNVVSYNTLM 262



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 64/243 (26%)

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+  R  P I+ ++ ++  L K      A+ +  +M+++G++PD      +I+CFC +G+
Sbjct: 1   MLLVRDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQ 60

Query: 347 YQEAANFLDEMVLGGITPNRLTW---------------SLHIR-------------IHNT 378
              +   L +++  G  PN +T                SLH                + T
Sbjct: 61  MTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYAT 120

Query: 379 VVQGLCK------------------TDPN------------------RAFQVYLSMRNRS 402
           ++ GLCK                  T PN                   A+ +Y  M  R 
Sbjct: 121 LLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  + +TYS+LI  FC  G + ++  +++E++L    P+  T++ +M AL    K+++A 
Sbjct: 181 IFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAK 240

Query: 463 ELL 465
            LL
Sbjct: 241 NLL 243


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 203/399 (50%), Gaps = 33/399 (8%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           GRV    DA+ VFD M   GC P+  +Y  +L    + +  + A      MR  G +P +
Sbjct: 176 GRVP---DALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDI 232

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + NVLI A+C N G +D A  I  ++P+ GC PD+ TY  ++  LC   +  E +ELF 
Sbjct: 233 VTYNVLINAMC-NEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFA 291

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM +  C+P  VT+ +++  LCQ   V+ A+++ + M   G  P++ TYSS++DGLC  G
Sbjct: 292 EMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVG 351

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
               A+ELL  + S   +P+ + Y+T+L GLC   + + A E++  M      PD   + 
Sbjct: 352 RVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFN 411

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS------------------------- 370
            +I+  C  G    A   +++M   G  P+ +T++                         
Sbjct: 412 TVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSY 471

Query: 371 ---LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
                I   NT+++GLC  D    A Q+ ++M +     D+ T++++IT  C+KG + ++
Sbjct: 472 GCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQA 531

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              +  +  +GC+P++ T++ V+ AL    K ++A +LL
Sbjct: 532 IETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLL 570



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 220/454 (48%), Gaps = 23/454 (5%)

Query: 26  KDVNKALVIFDSATAEYANG--FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI 83
           ++++ AL + DS  +   +G          +++I +L S  +   AE +   +      +
Sbjct: 72  EEIDDALALVDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFATLGASATVV 131

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT---VLAILVEENQLKLAF 140
           T   + ++  GY R  R  DA R+   M      P P    T   ++  L    ++  A 
Sbjct: 132 T---YNTMVNGYCRAGRIEDARRLISGM------PFPPDTFTFNPLIRALCVRGRVPDAL 182

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
             +  M   G  P V + ++L+ A CK SG   A   +  EM  +GC PD  TY  LIN 
Sbjct: 183 AVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMV-LLDEMRAKGCEPDIVTYNVLINA 241

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           +C  G + EA  +  ++ +  C P  VTYT ++  LC S+  +E   LF EM S    P+
Sbjct: 242 MCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPD 301

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             T+++++  LC+ G   +A++++  M      P+IVTYS++L+GLC  G++ +AVE+L 
Sbjct: 302 EVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLS 361

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           R+K  G KPD   Y  ++   C I +++ A   + EMV     P+ +T+       NTV+
Sbjct: 362 RLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTF-------NTVI 414

Query: 381 QGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LC K   +RA +V   M     + D +TY+S+I   C +  I  +  ++  L   GC 
Sbjct: 415 ASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCK 474

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           PD  T++ ++  L    +   A +L++  + + C
Sbjct: 475 PDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDC 508



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 213/425 (50%), Gaps = 11/425 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           +N    D  TF+ +++ L        A  ++D +++  C      + SI  G   V R  
Sbjct: 295 SNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVD 354

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +  ++K +GC+P   +Y TVL  L    Q + A      M      P   + N +I
Sbjct: 355 DAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVI 414

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            +LC+  G +D A K+  +M   GC PD  TY ++I+GLC    I +A EL   +++  C
Sbjct: 415 ASLCQK-GLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGC 473

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VT+ +L+ GLC     E+A +L   M      P+  T+++++  LC+ G   QA+E
Sbjct: 474 KPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIE 533

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L++M      PN  TY+ +++ L K GK QEA+++L  M      PD   Y  +IS   
Sbjct: 534 TLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMT--NGTPDLITYNTVISNIT 591

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             GK +EA + L  MV  G++P+ +T+        ++  G+C+ D  +RA ++   +++ 
Sbjct: 592 KAGKMEEALDLLRVMVSNGLSPDTITY-------RSLAYGICREDGTDRAIRMLCRLQDM 644

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +S D+  Y+ ++  FC+      +      +V  GC+PDE T+  ++ AL     + +A
Sbjct: 645 GLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEA 704

Query: 462 AELLL 466
            +LL+
Sbjct: 705 KQLLV 709



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 209/420 (49%), Gaps = 14/420 (3%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +A+V+ D   A+   G   D  T++++I+ + +      A ++L  +    C      + 
Sbjct: 215 QAMVLLDEMRAK---GCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYT 271

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            + +      R  +   +F +M    C P   ++ T++  L ++  +  A +   HM E 
Sbjct: 272 PVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEH 331

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P + + + ++  LC + G +D A ++   + + GC PD+  Y T++ GLC + +   
Sbjct: 332 GCIPDIVTYSSILDGLC-DVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEH 390

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A+EL  EM    C P  VT+ ++I  LCQ   V+ A+++ E+M   G  P++ TY+S++D
Sbjct: 391 AEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIID 450

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC   C   AMELL  + S   +P+IVT++TLL GLC   + ++A +++  M      P
Sbjct: 451 GLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPP 510

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
           DA  +  +I+  C  G   +A   L  M   G  PN+ T+       N VV  L K    
Sbjct: 511 DATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTY-------NIVVDALLKAGKT 563

Query: 390 R-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           + A ++   M N   + D +TY+++I+   K G + ++  ++  +V +G  PD  T+ ++
Sbjct: 564 QEALKLLSGMTNG--TPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSL 621



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 158/325 (48%), Gaps = 15/325 (4%)

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           V   N+LIK LC      DA  ++F  +   G +    TY T++NG CR G+I +A+ L 
Sbjct: 98  VVPCNILIKRLCSGGRVADAE-RVFATL---GASATVVTYNTMVNGYCRAGRIEDARRLI 153

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
             M      P   T+  LI  LC    V +A+ +F++M  +G  P+V TYS L+D  CK 
Sbjct: 154 SGMPFP---PDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKA 210

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
               QAM LL  M +K   P+IVTY+ L+N +C EG + EA+ IL  +   G KPDA  Y
Sbjct: 211 SGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTY 270

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQ 393
             ++   C   +++E      EM      P+ +T+       NT+V  LC+    +RA +
Sbjct: 271 TPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTF-------NTIVTSLCQQGLVDRAIK 323

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           V   M       D +TYSS++   C  G +  +  ++  L   GC PD   ++ V+  L 
Sbjct: 324 VVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLC 383

Query: 454 DRRKMRQAAELLLLELMNKCVEAEV 478
              +   A EL+   + + C   EV
Sbjct: 384 SIEQWEHAEELMAEMVCSDCPPDEV 408



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 19/252 (7%)

Query: 233 INGLCQSKSVEEAMRLFEEMRSKG-----VEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +  L Q + +++A+ L + + S G     +   V   + L+  LC GG  + A  +   +
Sbjct: 65  LRSLIQREEIDDALALVDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFATL 124

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
            +      +VTY+T++NG C+ G++++A  ++  M      PD   +  +I   C  G+ 
Sbjct: 125 GASA---TVVTYNTMVNGYCRAGRIEDARRLISGMPF---PPDTFTFNPLIRALCVRGRV 178

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVD 406
            +A    D+M+  G +P+ +T+S+       ++   CK    R   V L  MR +    D
Sbjct: 179 PDALAVFDDMLHRGCSPSVVTYSI-------LLDATCKASGYRQAMVLLDEMRAKGCEPD 231

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY+ LI   C +GD+ ++  I+ +L   GC PD  T++ V+ +L    + ++  EL  
Sbjct: 232 IVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFA 291

Query: 467 LELMNKCVEAEV 478
               NKC   EV
Sbjct: 292 EMASNKCAPDEV 303



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 3/245 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  TF+ ++  L S +++  AE L+  +    C      F ++     +    L A
Sbjct: 472 GCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQA 531

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +     M E GC P   +Y  V+  L++  + + A +    M      P + + N +I  
Sbjct: 532 IETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGM--TNGTPDLITYNTVISN 589

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           + K +G M+ A  + R M + G +PD+ TY +L  G+CR      A  +   ++    SP
Sbjct: 590 ITK-AGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSP 648

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
               Y  ++ G CQ+   + A+  F  M S G  P+  TY  L++ L       +A +LL
Sbjct: 649 DATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLL 708

Query: 285 QMMIS 289
             + S
Sbjct: 709 VNLCS 713


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 192/361 (53%), Gaps = 9/361 (2%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           L+A  +FD+M   G  P   S+ +++ +L     L  A   +R M   GI P      +L
Sbjct: 379 LEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   C+N G +  A K+  EM  RGC  D  TY T +NGLC+     +A  LF EM  + 
Sbjct: 439 IDGFCRN-GALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERG 497

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P   T+T+LI G C+  ++++A+ LFE M    ++P+  TY++L+DG CK G   +A 
Sbjct: 498 MVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAK 557

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           EL   MI K   P+ ++Y T+LNG C  G L EA+ + D+M  +G++P+      +I  +
Sbjct: 558 ELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGY 617

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRN 400
           C  G   +A  +L +M+  GI P+  ++       NT++ G  K  +  +AF +   M  
Sbjct: 618 CRSGDMPKAYEYLSKMISNGIIPDSFSY-------NTLIDGYLKEANLEKAFILINEMEK 670

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R +  + +TY+ ++  FC +G + ++ +++ +++  G  PD  T+S+++     +  M++
Sbjct: 671 RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730

Query: 461 A 461
           A
Sbjct: 731 A 731



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 218/424 (51%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             G   D  T++ +I+          A  LL+  +    +     + +I  G  ++ +  
Sbjct: 285 GKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYD 344

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  V  +M + G  P   +Y T+L  +   + +  A   +  M   G+ P + S + LI
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI 404

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L +N G +  A   FREM   G  PD+  Y  LI+G CR G + +A ++  EM  + C
Sbjct: 405 GVLARN-GHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGC 463

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              VVTY + +NGLC+ K   +A  LF EM  +G+ P+ +T+++L+ G CK G   +A+ 
Sbjct: 464 FMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALN 523

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M+    +P+ VTY+TL++G CK G++  A E+ D M  + + PD   YG +++ FC
Sbjct: 524 LFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFC 583

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
             G   EA N  D+M+  GI PN +T        NT+++G C++ D  +A++    M + 
Sbjct: 584 SSGLLPEALNLCDQMLEKGIRPNLVTC-------NTLIKGYCRSGDMPKAYEYLSKMISN 636

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I  DS +Y++LI  + K+ ++ K+  +++E+   G   +  T++ ++       KM++A
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEA 696

Query: 462 AELL 465
            ++L
Sbjct: 697 EQVL 700



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 191/382 (50%), Gaps = 14/382 (3%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ +A  IFD  +     G   D  +FS +I  L        A  L+     E+  I  D
Sbjct: 377 NILEAQEIFDEMSRR---GVLPDLVSFSSLIGVLARNGHLYQA--LMHFREMERSGIVPD 431

Query: 87  --IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
             I+  +  G+ R     DA+++ D+M   GC     +Y T L  L ++     A   + 
Sbjct: 432 NVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFN 491

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E G+ P   +   LI+  CK+ G MD A  +F  M      PD  TY TLI+G C+ 
Sbjct: 492 EMVERGMVPDFYTFTTLIRGYCKD-GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKA 550

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G++  AKEL+ +M  K   P  ++Y +++NG C S  + EA+ L ++M  KG+ PN+ T 
Sbjct: 551 GEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTC 610

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           ++L+ G C+ G   +A E L  MIS    P+  +Y+TL++G  KE  L++A  +++ M+ 
Sbjct: 611 NTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEK 670

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +GL+ +   Y  I++ FC  GK QEA   L +M+  GI P+  T+S  I  H      + 
Sbjct: 671 RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGH------VS 724

Query: 385 KTDPNRAFQVYLSMRNRSISVD 406
           + +   AF+ +  M  R +  D
Sbjct: 725 QDNMKEAFRFHDEMLQRGLVPD 746



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 214/480 (44%), Gaps = 63/480 (13%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE- 79
           L R   D++  L      +  + N F+H + + S M+  LV   +   A+  + R+ ++ 
Sbjct: 107 LFRCRGDLHLGLKFIGLVSYHFPN-FKHSSXSLSAMVHFLVRGRRLSEAQACILRMVRKS 165

Query: 80  ---KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
              +  + E + +S C  +G V    D +               ++Y       V+  +L
Sbjct: 166 GVSRVKVVESL-ISTCFYFGSVGLIYDLL--------------VRTY-------VQAKKL 203

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           +     ++ +R  G+   + + N L+  L + +G +D A++I+ E+   G   + YT   
Sbjct: 204 REGSEAFQILRRKGVSVSINACNKLLGGLVR-TGWVDLAWEIYGEVVRGGIELNVYTLNI 262

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++N LC+  K         +ME K     +VTY +LIN  C+   VEEA +L     S+G
Sbjct: 263 MVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRG 322

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           +EP + TY++++ GLCK G   +A ++L  M+     PN  TY+TLL  +C+   + EA 
Sbjct: 323 MEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQ 382

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           EI D M  +G+ PD   +  +I      G   +A     EM   GI P+ + +++ I   
Sbjct: 383 EIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGF 442

Query: 375 --------------------------IHNTVVQGLCK----TDPNRAFQVYLSMRNRSIS 404
                                      +NT + GLCK     D +  F     M  R + 
Sbjct: 443 CRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFN---EMVERGMV 499

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D  T+++LI  +CK G++ K+  + + +V     PD+ T++ ++       +M +A EL
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           + Y  L+    +  KL+E  E    ++ +G+        K++      G    A     E
Sbjct: 188 LIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGE 247

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLIT 415
           +V GGI  N  T        N +V  LCK         +LS M  + +  D +TY++LI 
Sbjct: 248 VVRGGIELNVYTL-------NIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLIN 300

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +C++G + ++ ++++     G  P   T++A++  L    K  +A ++L+
Sbjct: 301 AYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLI 351


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 221/425 (52%), Gaps = 12/425 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDL-LDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           GFR D   F+ ++  L +  +   A D+ L R+ +  C      +  + +G    +R  +
Sbjct: 121 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE 180

Query: 104 AMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           A+ +   M + G  C P   SY TV+    +E  L  A+  Y  M + GI P V + + +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I ALCK +  MD A ++   M   G  P+  TY ++++G C  G+  EA    K+M +  
Sbjct: 241 IAALCK-AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVTY SL++ LC++    EA ++F+ M  +G++P + TY +L+ G    G   +  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL +M+     PN   +S L+    K+GK+ +A+ +  +M+ QGL PD   YG +I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  G+ ++A  + ++M+   ++P  +       ++N+++  LC  D  ++A ++ L M +
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNI-------VYNSLIHSLCIFDKWDKAKELILEMLD 472

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I +D++ ++S+I   CK+G + +S ++ D +V  G  PD  T+S ++       KM +
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 461 AAELL 465
           A +LL
Sbjct: 533 ATKLL 537



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 189/338 (55%), Gaps = 20/338 (5%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGL 201
           R M ++G  P V S N+L+K LC  + + +A  ++ + MP+ G  C PD  +Y T+ING 
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEA-LELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
            + G + +A   + EM  +   P VVTY+S+I  LC+++++++AM +   M   GV PN 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY+S++ G C  G   +A+  L+ M S    P++VTY++L++ LCK G+  EA ++ D 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  +GLKP+   YG ++  +   G   E    LD MV  GI PN   +S+ I  +    Q
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY--AKQ 387

Query: 382 GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           G  K D  +A  V+  MR + ++ D++TY ++I   CK G +  + R  ++++ +   P 
Sbjct: 388 G--KVD--QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443

Query: 442 EGTWSAVMTAL-----WDRRKMRQAAELLLLELMNKCV 474
              +++++ +L     WD+      A+ L+LE++++ +
Sbjct: 444 NIVYNSLIHSLCIFDKWDK------AKELILEMLDRGI 475



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 226/454 (49%), Gaps = 12/454 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++  +   + ++KA+ +    T+   NG   +  T++ ++    S+ Q + A   
Sbjct: 235 VTYSSIIAALCKAQAMDKAMEVL---TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L +++ +  +     + S+     +  R  +A ++FD M + G +P   +Y T+L     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L         M   GI P     ++LI A  K  G +D A  +F +M  +G  PD+ 
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ-GKVDQAMLVFSKMRQQGLNPDTV 410

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYGT+I  LC+ G++ +A   F++M  +  SP  + Y SLI+ LC     ++A  L  EM
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+  +   ++S++D  CK G   ++ +L  +M+    +P+I+TYSTL++G C  GK+
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L  M   G+KPD   Y  +I+ +C I + ++A     EM   G++P+ +T+   
Sbjct: 531 DEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY--- 587

Query: 373 IRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               N ++QGL +T    A  ++Y+ +      ++  TY+ ++   CK     ++ R+  
Sbjct: 588 ----NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQ 643

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            L L     +  T++ ++ AL    +  +A +L 
Sbjct: 644 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLF 677



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 191/428 (44%), Gaps = 43/428 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           +FDS T     G + + +T+  ++    +         LLD + +        +F  +  
Sbjct: 326 MFDSMTKR---GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +   AM VF KM++ G  P   +Y TV+ IL +  +++ A R++  M +  + P
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 154 CVASLNVLIKALC----------------KNSGTMDAAF------------------KIF 179
                N LI +LC                     +D  F                  K+F
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  PD  TY TLI+G C  GK+ EA +L   M +    P  VTY +LING C+ 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +E+A+ LF EM S GV P++ TY+ ++ GL +   ++ A EL   +     +  + TY
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     EA+ +   + L  L+ +   +  +I     +G+  EA +    +  
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G+ P+  T+SL     N + QGL +        ++LSM     + +S   +S++    +
Sbjct: 683 NGLVPDVRTYSLM--AENLIEQGLLEE----LDDLFLSMEENGCTANSRMLNSIVRKLLQ 736

Query: 420 KGDIHKSA 427
           +GDI ++ 
Sbjct: 737 RGDITRAG 744



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 140/305 (45%), Gaps = 14/305 (4%)

Query: 174 AAFKIFREMPNRGC---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           AA   +  M   G    TP+  TYG LI   C  G++         +  K      + +T
Sbjct: 71  AAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 231 SLINGLCQSKSVEEAMRL-FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            L+ GLC  K   +AM +    M   G  PNVF+Y+ L+ GLC    S +A+ELLQMM  
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 290 KRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                 P++V+Y+T++NG  KEG L +A      M  +G+ P+   Y  II+  C     
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD 406
            +A   L  MV  G+ PN        R +N++V G C +  P  A      M +  +  D
Sbjct: 251 DKAMEVLTSMVKNGVMPN-------CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY+SL+   CK G   ++ ++ D +   G  P+  T+  ++     +  + +   LL 
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 467 LELMN 471
           L + N
Sbjct: 364 LMVRN 368



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 163/343 (47%), Gaps = 6/343 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V  A+  F+    E        N  ++ +I  L   +++  A++L
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDER---LSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C +    F SI   + +  R +++ ++FD M   G +P   +Y T++    
Sbjct: 467 ILEMLDRGIC-LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              ++  A +    M  +G++P   + N LI   CK S  M+ A  +FREM + G +PD 
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKIS-RMEDALVLFREMESSGVSPDI 584

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  ++ GL +  +   AKEL+  +        + TY  +++GLC++   +EA+R+F+ 
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQN 644

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +    ++    T++ ++  L K G + +A +L   + +    P++ TYS +   L ++G 
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGL 704

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           L+E  ++   M+  G   ++ +   I+      G    A  +L
Sbjct: 705 LEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+S +I     A +   A  LL  +           + ++  GY ++ R  DA
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+  G  P   +Y  +L  L +  +   A   Y  + E G Q  +++ N+++  
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN+ T D A ++F+ +       ++ T+  +I  L ++G+  EAK+LF  +      P
Sbjct: 629 LCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY+ +   L +   +EE   LF  M   G   N    +S++  L + G  ++A   L
Sbjct: 688 DVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             MI ++H     + ++L   L   GK QE
Sbjct: 748 -FMIDEKHFSLEASTASLFLDLLSGGKYQE 776



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 108/261 (41%), Gaps = 44/261 (16%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F E+  +    ++      +  + +  S   A+  +  M   G   V PN+ TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            L+   C  G        L  +I K  R + + ++ LL GLC + +  +A++I L RM  
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G  P+   Y  ++   CD  + QEA   L  M   G                    G C
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG--------------------GDC 195

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             D                    ++Y+++I  F K+GD+ K+     E++  G LP+  T
Sbjct: 196 PPD-------------------VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVT 236

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S+++ AL   + M +A E+L
Sbjct: 237 YSSIIAALCKAQAMDKAMEVL 257


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 216/403 (53%), Gaps = 9/403 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R+D  TF+++I+      Q   A  +L ++ K   +       S+  G+ R +R  DA
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + DKM E G +P   +Y  ++  L +  ++  AF F++ +   GI+P V +   L+  
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC +S   DAA ++  +M  +  TP+  TY  L++   + GK+ EAKELF+EM   +  P
Sbjct: 235 LCNSSRWSDAA-RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP 293

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VTY+SL+NGLC    ++EA ++F+ M SKG   +V +Y++L++G CK       M+L 
Sbjct: 294 DIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 353

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +    N VTY+TL+ G  + G + +A E   +M   G+ PD   Y  ++   CD 
Sbjct: 354 REMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDN 413

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+ ++A    ++M        +    L I  + TV++G+CKT     A+ ++ S+  + +
Sbjct: 414 GELEKALVIFEDM-------QKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL 466

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             D +TY+++++  C KG +H+   +  ++  +G + ++ T S
Sbjct: 467 KPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 509



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 189/350 (54%), Gaps = 9/350 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  KM + G EP   +  +++      N++  A      M EIG +P + + N +I 
Sbjct: 139 ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIID 198

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK     DA F  F+E+  +G  P+  TY  L+NGLC   +  +A  L  +M  K  +
Sbjct: 199 SLCKTKRVNDA-FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKIT 257

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+TY++L++   ++  V EA  LFEEM    ++P++ TYSSL++GLC      +A ++
Sbjct: 258 PNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQM 317

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M+SK    ++V+Y+TL+NG CK  ++++ +++   M  +GL  +   Y  +I  F  
Sbjct: 318 FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 377

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G   +A  F  +M   GI+P+   W+     +N ++ GLC   +  +A  ++  M+ R 
Sbjct: 378 AGDVDKAQEFFSQMDFFGISPD--IWT-----YNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           + +D +TY+++I   CK G + ++  +   L L G  PD  T++ +M+ L
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 170/357 (47%), Gaps = 33/357 (9%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P +   N L+ A+ K     D    + ++M   G   D YT+  +IN  C   ++  A  
Sbjct: 83  PSIVDFNRLLSAIVKLK-KYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALS 141

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +  +M      P  VT  SL+NG C+   V +A+ L ++M   G +P++  Y++++D LC
Sbjct: 142 ILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC 201

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K    + A +  + +  K  RPN+VTY+ L+NGLC   +  +A  +L  M  + + P+  
Sbjct: 202 KTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 261

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS-------LHIRI---------- 375
            Y  ++  F   GK  EA    +EMV   I P+ +T+S       LH RI          
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLM 321

Query: 376 -----------HNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                      +NT++ G CK        +++  M  R +  +++TY++LI  F + GD+
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
            K+     ++   G  PD  T++ ++  L D  ++ +A  L++ E M K  E ++DI
Sbjct: 382 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA--LVIFEDMQK-REMDLDI 435



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 145/296 (48%), Gaps = 10/296 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L++ + +L K      L K+ME       + T+  
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +IN  C    V  A+ +  +M   G EP+  T  SL++G C+    S A+ L+  M+   
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P+IV Y+ +++ LCK  ++ +A +    ++ +G++P+   Y  +++  C+  ++ +AA
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245

Query: 352 NFLDEMVLGGITPNRLTWS--LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT 409
             L +M+   ITPN +T+S  L   + N  V          A +++  M   SI  D +T
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVL--------EAKELFEEMVRMSIDPDIVT 297

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           YSSL+   C    I ++ ++ D +V  GCL D  +++ ++      +++    +L 
Sbjct: 298 YSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 353



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 142/270 (52%), Gaps = 8/270 (2%)

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+ +A +LF +M      P++V +  L++ + + K  +  + L ++M   G+  +++T++
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            +++  C     S A+ +L  M+   + P+ VT  +L+NG C+  ++ +AV ++D+M   
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G KPD   Y  II   C   +  +A +F  E+   GI PN +T++        +V GLC 
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT-------ALVNGLCN 237

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +   + A ++   M  + I+ + +TYS+L+  F K G + ++  + +E+V     PD  T
Sbjct: 238 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 297

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           +S+++  L    ++ +A ++  L +   C+
Sbjct: 298 YSSLVNGLCLHDRIDEANQMFDLMVSKGCL 327


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 223/444 (50%), Gaps = 18/444 (4%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---IT 84
           +  AL ++D     +  GFR    T+S +I  L   ++      LL+ +    C    +T
Sbjct: 81  IENALTLYDDMAIHF--GFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVT 138

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            +  ++   G GR     +A  + ++M   GC P   ++  ++  L +E +++ AFR   
Sbjct: 139 YNTLVNALLGQGRSK---EAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVD 195

Query: 145 HMR--EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
            M   E G+ P V + N ++  LCK    +DA   +F+    RGC P+  TY TLI+GL 
Sbjct: 196 EMFMIESGLSPDVITFNSVLDGLCKEQRILDA-HNVFKRALERGCRPNVVTYSTLIDGLS 254

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           ++ K+ EA +L  +M    C    VTY+++++GL +   +E+A+ +  +MR  G  P+  
Sbjct: 255 KMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAV 314

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY++L+DG  K     +A+ LL+ M+     P++VTY+TL +GLC+ G+  EAVEILD M
Sbjct: 315 TYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYM 374

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G  P+A  Y  I+   C  G+  EA  + ++M    +       + H+  ++ ++ G
Sbjct: 375 AARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVV------APHVIAYSALIDG 428

Query: 383 LCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LCK    + A++    M       D +T+S LI   C  G I     +   +   GC+PD
Sbjct: 429 LCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPD 488

Query: 442 EGTWSAVMTALWDRRKMRQAAELL 465
             T++ ++  L    ++ +A +L 
Sbjct: 489 MVTYATLVDRLCRASRVDEAFDLF 512



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 194/372 (52%), Gaps = 12/372 (3%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR-EIGIQ 152
           G G+  R  +A  +F++ +  GC PT  +Y T++  L +  +++ A   Y  M    G +
Sbjct: 39  GLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFR 98

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V + + LI  LC++   +D   K+  EM  RGC P++ TY TL+N L   G+  EA  
Sbjct: 99  PTVVTYSTLIDGLCRDH-EVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFS 157

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR--SKGVEPNVFTYSSLMDG 270
           L ++M    C P ++T+  +I GLC+   +E A R+ +EM     G+ P+V T++S++DG
Sbjct: 158 LLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDG 217

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LCK      A  + +  + +  RPN+VTYSTL++GL K  K+ EA+++L +M   G + +
Sbjct: 218 LCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRAN 277

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR 390
              Y  ++     +G+ ++A   L +M   G  P+ +T+       NT++ G  K    R
Sbjct: 278 TVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTY-------NTLIDGFFKRQRLR 330

Query: 391 -AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  +   M         +TY++L    C+ G   ++  I+D +   GC P+  T+S+++
Sbjct: 331 EAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIV 390

Query: 450 TALWDRRKMRQA 461
             L    ++ +A
Sbjct: 391 DGLCKAGRVTEA 402



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 187/372 (50%), Gaps = 10/372 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++ +  E ++  A  + D       +G   D  TF+ ++  L    +   A ++
Sbjct: 172 ITFGLIIKGLCKEGEIEAAFRVVDEMFM-IESGLSPDVITFNSVLDGLCKEQRILDAHNV 230

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
             R  +  C      + ++  G  ++ +  +A+++  KM E GC     +Y TV+  L++
Sbjct: 231 FKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLK 290

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             +++ A    R MR+ G  P   + N LI    K    +  A  + REM   G  P   
Sbjct: 291 VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQ-RLREAVGLLREMLEAGFHPSVV 349

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY TL +GLCR G+  EA E+   M  + C+P  +TY+S+++GLC++  V EA+  FE+M
Sbjct: 350 TYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 409

Query: 253 -RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
            R + V P+V  YS+L+DGLCK G   +A E L+ MI     P++VT+S L+NGLC  G+
Sbjct: 410 ARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGR 469

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +   +E+   M  +G  PD   Y  ++   C   +  EA +   +M   G++P+R T   
Sbjct: 470 IDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRST--- 526

Query: 372 HIRIHNTVVQGL 383
                 T++ GL
Sbjct: 527 ----RRTMIHGL 534



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 180/344 (52%), Gaps = 47/344 (13%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I  LCK S  +D A  +F++M ++   PD  TYG LI+GL +  ++ EA +LF+E   K
Sbjct: 1   MIDGLCK-SRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 59

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQ 279
            C PTVVTY ++I+GLC+   +E A+ L+++M    G  P V TYS+L+DGLC+     +
Sbjct: 60  GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDK 119

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
             +LL+ M  +   PN VTY+TL+N L  +G+ +EA  +L++M   G  P+   +G II 
Sbjct: 120 GCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIK 179

Query: 340 CFCDIGKYQEAANFLDEMVL--GGITPNRLTWSLHIRIHNTVVQGLCKTD---------- 387
             C  G+ + A   +DEM +   G++P+ +T+       N+V+ GLCK            
Sbjct: 180 GLCKEGEIEAAFRVVDEMFMIESGLSPDVITF-------NSVLDGLCKEQRILDAHNVFK 232

Query: 388 --------PN------------------RAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
                   PN                   A Q+   M       +++TYS+++    K G
Sbjct: 233 RALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVG 292

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  +  ++ ++   GCLPD  T++ ++   + R+++R+A  LL
Sbjct: 293 RMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLL 336



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 179/345 (51%), Gaps = 5/345 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   VL  +  E+ +  A  +F  A      G R +  T+S +I  L    +   A  L
Sbjct: 209 ITFNSVLDGLCKEQRILDAHNVFKRA---LERGCRPNVVTYSTLIDGLSKMAKMDEALQL 265

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++ +  C      + ++  G  +V R  DA+ V  +M++ GC P   +Y T++    +
Sbjct: 266 LAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFK 325

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             +L+ A    R M E G  P V +   L   LC+ SG  D A +I   M  RGC P++ 
Sbjct: 326 RQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR-SGRFDEAVEILDYMAARGCAPNAI 384

Query: 193 TYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           TY ++++GLC+ G++ EA   F++M   +  +P V+ Y++LI+GLC++  ++EA    E 
Sbjct: 385 TYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLER 444

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M   G  P+V T+S L++GLC  G     +EL + M  +   P++VTY+TL++ LC+  +
Sbjct: 445 MIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASR 504

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           + EA ++  +M+  GL PD      +I    ++ + ++A    DE
Sbjct: 505 VDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 186/366 (50%), Gaps = 12/366 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +F +M +    P   +Y  ++  L ++ ++K A+  +   R  G  P V + N +I 
Sbjct: 14  AITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMID 73

Query: 164 ALCKNSGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            LCK  G ++ A  ++ +M  + G  P   TY TLI+GLCR  ++ +  +L +EM  + C
Sbjct: 74  GLCK-CGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGC 132

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P  VTY +L+N L      +EA  L E+M + G  P + T+  ++ GLCK G    A  
Sbjct: 133 APNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFR 192

Query: 283 LLQ--MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           ++    MI     P+++T++++L+GLCKE ++ +A  +  R   +G +P+   Y  +I  
Sbjct: 193 VVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDG 252

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
              + K  EA   L +MV  G   N +T+S       TVV GL K      A  V   MR
Sbjct: 253 LSKMAKMDEALQLLAKMVELGCRANTVTYS-------TVVDGLLKVGRMEDAVVVLRQMR 305

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +     D++TY++LI  F K+  + ++  ++ E++  G  P   T++ +   L    +  
Sbjct: 306 DAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFD 365

Query: 460 QAAELL 465
           +A E+L
Sbjct: 366 EAVEIL 371



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 2/211 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF     T++ +   L  + +F  A ++LD +    C      + SI  G  +  R  +A
Sbjct: 343 GFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEA 402

Query: 105 MRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +  F+KM ++    P   +Y  ++  L +  ++  A+ F   M   G  P V + ++LI 
Sbjct: 403 LGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILIN 462

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC ++G +D   ++FR M  RGC PD  TY TL++ LCR  ++ EA +LF++M +   S
Sbjct: 463 GLC-DAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLS 521

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
           P   T  ++I+GL +    E+A R+ +E  S
Sbjct: 522 PDRSTRRTMIHGLLEVNRDEDAKRIQDEENS 552



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 40/207 (19%)

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++DGLCK     +A+ L + M+ K   P++VTY  L++GL K+ +++EA ++ +  + +G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             P    Y  +I   C  G+ + A    D+M            ++H     TVV      
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDM------------AIHFGFRPTVV------ 102

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
                                 TYS+LI   C+  ++ K  ++++E+   GC P+  T++
Sbjct: 103 ----------------------TYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYN 140

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKC 473
            ++ AL  + + ++A  LL     N C
Sbjct: 141 TLVNALLGQGRSKEAFSLLEQMAANGC 167


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 221/442 (50%), Gaps = 30/442 (6%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++ +I+ L        AE ++ +V + +       + S+  G+ R H    A++VF++M 
Sbjct: 388 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 447

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           + GCEP   +Y T++  L +  ++  AF   R M   GI P   +    I ALC + G  
Sbjct: 448 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC-DMGCY 506

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           + A+++F +M N+GC P+ YTY  LI+GLC  G +  A  LF  M      P  VTY +L
Sbjct: 507 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 566

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN L +++ ++ A  +   M   G+  N+ TY+ ++ G C  G   +AM ++  M+ + H
Sbjct: 567 INILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 626

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
             N+VTY+T++ G C  G    A+ ILD M+  G KPD   Y ++I  FC I K + A  
Sbjct: 627 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 686

Query: 353 FLDEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQGLC 384
             +EMV  G+ PN +T++                             +++ +N ++ GL 
Sbjct: 687 LFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLT 746

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K +  + A ++   M    I  + +TY+++I   CK G    +  + ++++  GCLP+  
Sbjct: 747 KQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLL 806

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           T+S+++ AL    K+ +A  L 
Sbjct: 807 TYSSLIRALGQEGKVEEAENLF 828



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 179/360 (49%), Gaps = 43/360 (11%)

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA-------------------------- 174
           R++R + E G+QP +   N +I ALCK+    DA                          
Sbjct: 372 RYHRMLSE-GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGH 430

Query: 175 --------AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
                   A ++F +M   GC P++ TY TLINGLC  G++ EA +L +EM      PT 
Sbjct: 431 CRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 490

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T T  I  LC     E+A RLF +M++KG EPNV+TY++L+ GLC  G    A+ L   
Sbjct: 491 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHR 550

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M      PN VTY+ L+N L +  +++ A  +L+ M   GL  +   Y ++I  +C +G 
Sbjct: 551 MSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGD 610

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
            ++A   ++ M+  G + N +T+       NT+++G C + +   A ++   MR+     
Sbjct: 611 PKKAMLVMNNMLQRGHSANLVTY-------NTIIKGYCDSGNTTSALRILDLMRDGGCKP 663

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D  +Y+ LI  FCK   +  +  + +E+V DG  P+E T++A++       K+  A  LL
Sbjct: 664 DEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLL 723



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 212/437 (48%), Gaps = 21/437 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   +  T++ +I+ LV   + + A  +L+ + +         +  + +GY  +  P  
Sbjct: 554 DGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKK 613

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V + M + G      +Y T++    +      A R    MR+ G +P   S   LI 
Sbjct: 614 AMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELIC 673

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK S  M++AF +F EM + G  P+  TY  LI+G C+  K+  A  L + M+   C 
Sbjct: 674 GFCKIS-KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 732

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V TY  LI+GL +  +   A  L + M  +G+ PNV TY++++DGLCK G +S A+E+
Sbjct: 733 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 792

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI +   PN++TYS+L+  L +EGK++EA  +   ++  GL PD   Y K+I  +  
Sbjct: 793 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 852

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------IHNTVVQGLCKTDPNRAFQVYL 396
            GK + A NFL  M+  G  P   T+ + I+       + +  +  L    PN +F  Y 
Sbjct: 853 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFG-YQ 911

Query: 397 SMRNRSISVDSLTYS------------SLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +    ++SV S   +            +L++     G   ++  ++  ++  G  PD+  
Sbjct: 912 TTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEA 971

Query: 445 WSAVMTALWDRRKMRQA 461
           +++++ +L   R +  A
Sbjct: 972 YNSLLCSLLRVRNVDLA 988



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 159/332 (47%), Gaps = 43/332 (12%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G   A    +  M + G  P+   Y  +IN LC+ G + +A+ + K++     SP   TY
Sbjct: 364 GMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTY 423

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI- 288
           TS+I G C+   ++ A+++F +M  +G EPN  TYS+L++GLC  G  ++A +L++ MI 
Sbjct: 424 TSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMIL 483

Query: 289 ----------------------------------SKRHRPNIVTYSTLLNGLCKEGKLQE 314
                                             +K   PN+ TY+ L++GLC  G L+ 
Sbjct: 484 HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKV 543

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+ +  RM   G+ P+   Y  +I+   +  + + A   L+ M   G+  N +T+     
Sbjct: 544 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTY----- 598

Query: 375 IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             N +++G C   DP +A  V  +M  R  S + +TY+++I  +C  G+   + RI+D +
Sbjct: 599 --NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM 656

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              GC PDE +++ ++       KM  A  L 
Sbjct: 657 RDGGCKPDEWSYTELICGFCKISKMESAFGLF 688



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 169/403 (41%), Gaps = 33/403 (8%)

Query: 44   NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
             G + D  +++ +I      ++   A  L + +  +     E  + ++  GY +  +   
Sbjct: 659  GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDT 718

Query: 104  AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            A  + + MK  GC P  ++Y  ++  L ++N    A    + M E GI P V +   +I 
Sbjct: 719  ATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMID 778

Query: 164  ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             LCKN G+   A ++F +M  +GC P+  TY +LI  L + GK+ EA+ LF E+E     
Sbjct: 779  GLCKN-GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI 837

Query: 224  PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL------------ 271
            P  +TY  +I     S  VE A      M   G +P ++TY  L+ GL            
Sbjct: 838  PDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLA 897

Query: 272  --------CKGGCSSQAMELLQMMISKRHRPN----IVTYSTLLNGLCKEGKLQEAVEIL 319
                    C  G  +   + + +M +K    +    +   + L++ L   G+  EA E+L
Sbjct: 898  ALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELL 957

Query: 320  DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
              M  QGL PD   Y  ++     +     A      M   G         +H+  +  +
Sbjct: 958  GSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC-------EVHLNGYKEL 1010

Query: 380  VQGLCKTDPNRAFQV-YLSMRNRSISVDSLTYSSLITCFCKKG 421
            +  LC+    +  ++ + +M  R+ + D +  + LI    + G
Sbjct: 1011 ICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 1053



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 139/312 (44%), Gaps = 44/312 (14%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LIK+ C +   M         +   G     + Y  L+  L RLG      + +  M ++
Sbjct: 321 LIKS-CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 379

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P ++ Y ++IN LC+  +V +A  + +++    + P+ FTY+S++ G C+      A
Sbjct: 380 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 439

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +++   M  +   PN VTYSTL+NGLC  G++ EA +++  M L G+ P A      I  
Sbjct: 440 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 499

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN 400
            CD+G Y++A     +M   G  PN                            VY     
Sbjct: 500 LCDMGCYEDAWRLFVDMKNKGCEPN----------------------------VY----- 526

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
                   TY++LI+  C  G +  +  +   +  DG  P+  T++A++  L + R+++ 
Sbjct: 527 --------TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKY 578

Query: 461 AAELLLLELMNK 472
           A   ++L LM +
Sbjct: 579 A--FVVLNLMGR 588



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 139/311 (44%), Gaps = 33/311 (10%)

Query: 52   TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            T++ MI  L        A ++ +++ ++ C      + S+ R  G+  +  +A  +F ++
Sbjct: 772  TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 831

Query: 112  KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            +  G  P   +Y+ ++   +   +++ AF F   M + G QP + +  VLIK L KN   
Sbjct: 832  ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYL 890

Query: 172  MDAAFKIFREMPNRGCTPD-SYTYGT---------------------------LINGLCR 203
            +  A +    +P+    P+ S+ Y T                           L++ L  
Sbjct: 891  L--ADQRLAALPD--VVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLST 946

Query: 204  LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
             G+ +EA EL   M ++   P    Y SL+  L + ++V+ AM +F+ M ++G E ++  
Sbjct: 947  AGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNG 1006

Query: 264  YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            Y  L+  LC+     +A    + M+ +   P+ V  + L++GL ++G     +E L  M+
Sbjct: 1007 YKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIME 1066

Query: 324  LQGLKPDAGLY 334
             +   P   +Y
Sbjct: 1067 TRRYMPSFHIY 1077



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 25/295 (8%)

Query: 13   ITSAQVLQLIRAEKDVNKALVIFDSATAEYA-NGFRHDNSTFSLMISKLVSANQFRPAED 71
            +T + +++ +  E  V +A  +F    AE   +G   D  T+  MI   + + +   A +
Sbjct: 806  LTYSSLIRALGQEGKVEEAENLF----AELERHGLIPDEITYVKMIEAYIMSGKVEHAFN 861

Query: 72   LLDRVNKEKCDITEDIFLSICRG----YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
             L R+ K  C  T   +  + +G    Y    + L A+        FG + T +  ++V+
Sbjct: 862  FLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVM 921

Query: 128  AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            +  + E    L+               V   N L+  L   +G    A ++   M ++G 
Sbjct: 922  SAKLAELDPGLS---------------VQVQNALVSNL-STAGRWFEANELLGSMISQGL 965

Query: 188  TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
             PD   Y +L+  L R+  +  A  +FK M T+ C   +  Y  LI  LCQ    +EA  
Sbjct: 966  CPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARI 1025

Query: 248  LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
             FE M  +   P+    + L+DGL + G     ME L +M ++R+ P+   Y+ L
Sbjct: 1026 TFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 1080


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 192/361 (53%), Gaps = 9/361 (2%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           L+A  +FD+M   G  P   S+ +++ +L     L  A   +R M   GI P      +L
Sbjct: 379 LEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   C+N G +  A K+  EM  RGC  D  TY T +NGLC+     +A  LF EM  + 
Sbjct: 439 IDGFCRN-GALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERG 497

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P   T+T+LI G C+  ++++A+ LFE M    ++P+  TY++L+DG CK G   +A 
Sbjct: 498 MVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAK 557

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           EL   MI K   P+ ++Y T+LNG C  G L EA+ + D+M  +G++P+      +I  +
Sbjct: 558 ELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGY 617

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRN 400
           C  G   +A  +L +M+  GI P+  ++       NT++ G  K  +  +AF +   M  
Sbjct: 618 CRSGDMPKAYEYLSKMISNGIIPDSFSY-------NTLIDGYLKEANLEKAFILINEMEK 670

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R +  + +TY+ ++  FC +G + ++ +++ +++  G  PD  T+S+++     +  M++
Sbjct: 671 RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730

Query: 461 A 461
           A
Sbjct: 731 A 731



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 218/424 (51%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             G   D  T++ +I+          A  LL+  +    +     + +I  G  ++ +  
Sbjct: 285 GKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYD 344

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  V  +M + G  P   +Y T+L  +   + +  A   +  M   G+ P + S + LI
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI 404

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L +N G +  A   FREM   G  PD+  Y  LI+G CR G + +A ++  EM  + C
Sbjct: 405 GVLARN-GHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGC 463

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              VVTY + +NGLC+ K   +A  LF EM  +G+ P+ +T+++L+ G CK G   +A+ 
Sbjct: 464 FMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALN 523

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M+    +P+ VTY+TL++G CK G++  A E+ D M  + + PD   YG +++ FC
Sbjct: 524 LFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFC 583

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
             G   EA N  D+M+  GI PN +T        NT+++G C++ D  +A++    M + 
Sbjct: 584 SSGLLPEALNLCDQMLEKGIRPNLVTC-------NTLIKGYCRSGDMPKAYEYLSKMISN 636

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I  DS +Y++LI  + K+ ++ K+  +++E+   G   +  T++ ++       KM++A
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEA 696

Query: 462 AELL 465
            ++L
Sbjct: 697 EQVL 700



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 191/382 (50%), Gaps = 14/382 (3%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ +A  IFD  +     G   D  +FS +I  L        A  L+     E+  I  D
Sbjct: 377 NILEAQEIFDEMSRR---GVLPDLVSFSSLIGVLARNGHLYQA--LMHFREMERSGIVPD 431

Query: 87  --IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
             I+  +  G+ R     DA+++ D+M   GC     +Y T L  L ++     A   + 
Sbjct: 432 NVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFN 491

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E G+ P   +   LI+  CK+ G MD A  +F  M      PD  TY TLI+G C+ 
Sbjct: 492 EMVERGMVPDFYTFTTLIRGYCKD-GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKA 550

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G++  AKEL+ +M  K   P  ++Y +++NG C S  + EA+ L ++M  KG+ PN+ T 
Sbjct: 551 GEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTC 610

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           ++L+ G C+ G   +A E L  MIS    P+  +Y+TL++G  KE  L++A  +++ M+ 
Sbjct: 611 NTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEK 670

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +GL+ +   Y  I++ FC  GK QEA   L +M+  GI P+  T+S  I  H      + 
Sbjct: 671 RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGH------VS 724

Query: 385 KTDPNRAFQVYLSMRNRSISVD 406
           + +   AF+ +  M  R +  D
Sbjct: 725 QDNMKEAFRFHDEMLQRGLVPD 746



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 214/480 (44%), Gaps = 63/480 (13%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE- 79
           L R   D++  L      +  + N F+H + + S M+  LV   +   A+  + R+ ++ 
Sbjct: 107 LFRCRGDLHLGLKFIGLVSYHFPN-FKHSSLSLSAMVHFLVRGRRLSEAQACILRMVRKS 165

Query: 80  ---KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
              +  + E + +S C  +G V    D +               ++Y       V+  +L
Sbjct: 166 GVSRVKVVESL-ISTCFYFGSVGLIYDLL--------------VRTY-------VQAKKL 203

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           +     ++ +R  G+   + + N L+  L + +G +D A++I+ E+   G   + YT   
Sbjct: 204 REGSEAFQILRRKGVSVSINACNKLLGGLVR-TGWVDLAWEIYGEVVRGGIELNVYTLNI 262

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++N LC+  K         +ME K     +VTY +LIN  C+   VEEA +L     S+G
Sbjct: 263 MVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRG 322

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           +EP + TY++++ GLCK G   +A ++L  M+     PN  TY+TLL  +C+   + EA 
Sbjct: 323 MEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQ 382

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           EI D M  +G+ PD   +  +I      G   +A     EM   GI P+ + +++ I   
Sbjct: 383 EIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGF 442

Query: 375 --------------------------IHNTVVQGLCK----TDPNRAFQVYLSMRNRSIS 404
                                      +NT + GLCK     D +  F     M  R + 
Sbjct: 443 CRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFN---EMVERGMV 499

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D  T+++LI  +CK G++ K+  + + +V     PD+ T++ ++       +M +A EL
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           + Y  L+    +  KL+E  E    ++ +G+        K++      G    A     E
Sbjct: 188 LIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGE 247

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLIT 415
           +V GGI  N  T        N +V  LCK         +LS M  + +  D +TY++LI 
Sbjct: 248 VVRGGIELNVYTL-------NIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLIN 300

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +C++G + ++ ++++     G  P   T++A++  L    K  +A ++L+
Sbjct: 301 AYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLI 351


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 210/416 (50%), Gaps = 11/416 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKC-DITEDIFLSICRGYGRVHRPLDAMRVFDK 110
            +  +I +LVSA +    +  L         D  + ++++  + Y R  R   A+  F++
Sbjct: 37  AYRALIRELVSAGRLDDVDAALASARSHLAPDSLQPLYVASIQAYARAGRLRAAVDAFER 96

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M  F C P   +Y  ++  LV       A + Y  M   G+ P   +  V +K+ C  +G
Sbjct: 97  MDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCL-TG 155

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
               A ++ R +  RGC      Y T++ GL   G  Y A+ LF EM  +   P V T+ 
Sbjct: 156 RPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFN 215

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++++ LCQ   V E+  L  ++  +G+  N FT +  + GLC+ G   +A+ L++ M   
Sbjct: 216 NVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERM-GA 274

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++VTY+TL+ GLCK+ K+QEA + L RM  QG  PD   Y  II  +C  G  QEA
Sbjct: 275 YVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEA 334

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLT 409
              L + V  G  P+R+T+        +++ GLC + D  RA +++   + + +  D + 
Sbjct: 335 TELLKDAVFKGFVPDRVTYC-------SLINGLCAEGDIERALELFNEAQAKDLKPDLVV 387

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y+SL+   C++G I  + ++++E+V +GC PD  T++ ++  L     +  AA ++
Sbjct: 388 YNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVM 443



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 222/432 (51%), Gaps = 25/432 (5%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRV-------NKEKCDITEDIFLSICRGYGRVHRP 101
           D +TF+ ++  L        +  LL +V       NK  C+I         RG     R 
Sbjct: 210 DVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIW-------IRGLCEDGRL 262

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A+ + ++M  +   P   +Y T++  L ++++++ A ++   M   G  P   + N +
Sbjct: 263 EEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTI 321

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK SG +  A ++ ++   +G  PD  TY +LINGLC  G I  A ELF E + K 
Sbjct: 322 IDGYCK-SGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKD 380

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P +V Y SL+ GLC+   +  A+++  EM  +G  P+++TY+ +++GLCK G  S A 
Sbjct: 381 LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAA 440

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            ++   I K + P++ T++TL++G CK  KL  A+++++RM   G+ PD   Y  +++  
Sbjct: 441 VVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGL 500

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  GK +E     +EM+L G  PN +T+       N +++  CK +    A  V + M  
Sbjct: 501 CKAGKAKEVNETFEEMILKGCRPNAITY-------NILIENFCKINQLEEASGVIVRMCQ 553

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +  D++++++LI  FC+ GD+  +  +  +L   G      T++ ++ A   +  M Q
Sbjct: 554 DGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNM-Q 612

Query: 461 AAELLLLELMNK 472
            AE +  E+++K
Sbjct: 613 MAEKIFGEMISK 624



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 193/375 (51%), Gaps = 10/375 (2%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           RP  A+R+   + E GC+  P +Y TV+  L        A   +  M    + P VA+ N
Sbjct: 156 RPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFN 215

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            ++ ALC+    M++   +  ++  RG + + +T    I GLC  G++ EA  L + M  
Sbjct: 216 NVLHALCQKGDVMESG-ALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGA 274

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
              +P VVTY +L+ GLC+   V+EA +    M ++G  P+ FTY++++DG CK G   +
Sbjct: 275 YV-APDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQE 333

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A ELL+  + K   P+ VTY +L+NGLC EG ++ A+E+ +  + + LKPD  +Y  ++ 
Sbjct: 334 ATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVK 393

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSM 398
             C  G    A   ++EMV  G  P+   W+     +N ++ GLCK  + + A  V    
Sbjct: 394 GLCRQGLILHALQVMNEMVEEGCHPD--IWT-----YNIIINGLCKMGNISDAAVVMNDA 446

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             +    D  T+++LI  +CK+  +  + ++V+ +   G  PD  T+++V+  L    K 
Sbjct: 447 IVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKA 506

Query: 459 RQAAELLLLELMNKC 473
           ++  E     ++  C
Sbjct: 507 KEVNETFEEMILKGC 521



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 211/425 (49%), Gaps = 10/425 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   D  T ++ +       +   A  LL  +++  CD     + ++ RG        
Sbjct: 134 AAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGY 193

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +FD+M      P   ++  VL  L ++  +  +      + + G+     + N+ I
Sbjct: 194 NARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWI 253

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           + LC++ G ++ A  +   M      PD  TY TL+ GLC+  K+ EA +    M  + C
Sbjct: 254 RGLCED-GRLEEAVALVERM-GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGC 311

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   TY ++I+G C+S  ++EA  L ++   KG  P+  TY SL++GLC  G   +A+E
Sbjct: 312 IPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALE 371

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L     +K  +P++V Y++L+ GLC++G +  A+++++ M  +G  PD   Y  II+  C
Sbjct: 372 LFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLC 431

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNR 401
            +G   +AA  +++ ++ G  P+  T+       NT++ G CK    + A Q+   M   
Sbjct: 432 KMGNISDAAVVMNDAIVKGYLPDVFTF-------NTLIDGYCKRLKLDSALQLVERMWTY 484

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I+ D +TY+S++   CK G   +     +E++L GC P+  T++ ++       ++ +A
Sbjct: 485 GIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEA 544

Query: 462 AELLL 466
           + +++
Sbjct: 545 SGVIV 549



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 211/431 (48%), Gaps = 7/431 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ ++  L   ++ + A   L R+  + C   +  + +I  GY +     +A  + 
Sbjct: 279 DVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELL 338

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
                 G  P   +Y +++  L  E  ++ A   +   +   ++P +   N L+K LC+ 
Sbjct: 339 KDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQ 398

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A ++  EM   GC PD +TY  +INGLC++G I +A  +  +   K   P V T
Sbjct: 399 -GLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 457

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           + +LI+G C+   ++ A++L E M + G+ P+V TY+S+++GLCK G + +  E  + MI
Sbjct: 458 FNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMI 517

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K  RPN +TY+ L+   CK  +L+EA  ++ RM   GL PDA  +  +I  FC  G   
Sbjct: 518 LKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLD 577

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL 408
            A     ++   G +    T+++ I  +++      K +   A +++  M ++    D  
Sbjct: 578 GAYLLFQKLDEKGYSATADTFNILIGAYSS------KLNMQMAEKIFGEMISKGYKPDLY 631

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY  L+   CK  ++ ++   + E++  G +P   T+  ++  L    ++ +A  ++ + 
Sbjct: 632 TYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIM 691

Query: 469 LMNKCVEAEVD 479
           +    V   VD
Sbjct: 692 VRMGVVPEVVD 702



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 146/326 (44%), Gaps = 1/326 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  T+  +I+ L +      A +L +    +       ++ S+ +G  R    L A
Sbjct: 345 GFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHA 404

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           ++V ++M E GC P   +Y  ++  L +   +  A          G  P V + N LI  
Sbjct: 405 LQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDG 464

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK    +D+A ++   M   G  PD  TY +++NGLC+ GK  E  E F+EM  K C P
Sbjct: 465 YCKRL-KLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRP 523

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +TY  LI   C+   +EEA  +   M   G+ P+  ++++L+ G C+ G    A  L 
Sbjct: 524 NAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLF 583

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           Q +  K +     T++ L+     +  +Q A +I   M  +G KPD   Y  ++   C  
Sbjct: 584 QKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKA 643

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWS 370
                A   L EM+  G  P+  T+ 
Sbjct: 644 ANVDRAYAHLAEMISKGFVPSMATFG 669


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 223/423 (52%), Gaps = 21/423 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SIC-RGYGRVHRPLD 103
           D   ++ +I+     N+   A  +LDR+  +      +T +I + S+C RG       LD
Sbjct: 153 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG------KLD 206

Query: 104 -AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A++V D++    C+PT  +Y  ++   + E  +  A +    M   G++P + + N +I
Sbjct: 207 LALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTII 266

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           + +CK  G +D AF++ R +  +GC PD  +Y  L+  L   GK  E ++L  +M ++ C
Sbjct: 267 RGMCK-EGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 325

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY+ LI  LC+   +EEAM L + M+ KG+ P+ ++Y  L+   C+ G    A+E
Sbjct: 326 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 385

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L+ MIS    P+IV Y+T+L  LCK GK  +A+EI  ++   G  P++  Y  + S   
Sbjct: 386 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 445

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G    A + + EMV  GI P+ +T+       N+++  LC+    ++AF++ + MR+ 
Sbjct: 446 SSGDKIRALHMILEMVSNGIDPDEITY-------NSMISCLCREGMVDKAFELLVDMRSC 498

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
                 +TY+ ++  FCK   I  +  ++D +V +GC P+E T++ ++  +       +A
Sbjct: 499 EFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEA 558

Query: 462 AEL 464
            EL
Sbjct: 559 MEL 561



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 199/396 (50%), Gaps = 11/396 (2%)

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+F   ++  G+ +++R  DA RV D+M+     P   +Y  ++  L    +L LA +  
Sbjct: 153 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVL 212

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             +     QP V +  +LI+A     G +D A K+  EM +RG  PD +TY T+I G+C+
Sbjct: 213 DQLLSDNCQPTVITYTILIEATMLEGG-VDEALKLLDEMLSRGLKPDMFTYNTIIRGMCK 271

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G +  A E+ + +E K C P V++Y  L+  L      EE  +L  +M S+  +PNV T
Sbjct: 272 EGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 331

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           YS L+  LC+ G   +AM LL++M  K   P+  +Y  L+   C+EG+L  A+E L+ M 
Sbjct: 332 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 391

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G  PD   Y  +++  C  GK  +A     ++   G +PN  ++       NT+   L
Sbjct: 392 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSY-------NTMFSAL 444

Query: 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
             + D  RA  + L M +  I  D +TY+S+I+C C++G + K+  ++ ++      P  
Sbjct: 445 WSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSV 504

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            T++ V+       ++  A ++L   + N C   E 
Sbjct: 505 VTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNET 540



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 202/377 (53%), Gaps = 10/377 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + +G+  +     A+RV + +++FG +P   +Y  ++    + N++  A R    MR   
Sbjct: 126 LIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD 184

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
             P   + N++I +LC + G +D A K+  ++ +  C P   TY  LI      G + EA
Sbjct: 185 FSPDTVTYNIMIGSLC-SRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEA 243

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            +L  EM ++   P + TY ++I G+C+   V+ A  +   +  KG EP+V +Y+ L+  
Sbjct: 244 LKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRA 303

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           L   G   +  +L+  M S++  PN+VTYS L+  LC++GK++EA+ +L  MK +GL PD
Sbjct: 304 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 363

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
           A  Y  +I+ FC  G+   A  FL+ M+  G  P+ + +       NTV+  LCK    +
Sbjct: 364 AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY-------NTVLATLCKNGKAD 416

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A +++  +     S +S +Y+++ +     GD  ++  ++ E+V +G  PDE T+++++
Sbjct: 417 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMI 476

Query: 450 TALWDRRKMRQAAELLL 466
           + L     + +A ELL+
Sbjct: 477 SCLCREGMVDKAFELLV 493



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 173/351 (49%), Gaps = 10/351 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T IT   +++    E  V++AL + D   +    G + D  T++ +I  +        A 
Sbjct: 223 TVITYTILIEATMLEGGVDEALKLLDEMLSR---GLKPDMFTYNTIIRGMCKEGMVDRAF 279

Query: 71  DLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           +++  +  + C+   I+ +I L      G+     +  ++  KM    C+P   +Y  ++
Sbjct: 280 EMIRNLELKGCEPDVISYNILLRALLNQGKWE---EGEKLMTKMFSEKCDPNVVTYSILI 336

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
             L  + +++ A    + M+E G+ P   S + LI A C+  G +D A +    M + GC
Sbjct: 337 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR-EGRLDVAIEFLETMISDGC 395

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            PD   Y T++  LC+ GK  +A E+F ++    CSP   +Y ++ + L  S     A+ 
Sbjct: 396 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 455

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +  EM S G++P+  TY+S++  LC+ G   +A ELL  M S    P++VTY+ +L G C
Sbjct: 456 MILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFC 515

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           K  ++++A+++LD M   G +P+   Y  +I      G   EA    +++V
Sbjct: 516 KAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 566



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 152/326 (46%), Gaps = 30/326 (9%)

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG    +  +   M  +G  PD      LI G   L  + +A  + + +E K   P V  
Sbjct: 98  SGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILE-KFGQPDVFA 156

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LING C+   +++A R+ + MRSK   P+  TY+ ++  LC  G    A+++L  ++
Sbjct: 157 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLL 216

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S   +P ++TY+ L+     EG + EA+++LD M  +GLKPD   Y  II   C  G   
Sbjct: 217 SDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 276

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVV 380
            A   +  + L G  P+ +++++ +R                             ++ ++
Sbjct: 277 RAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 336

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LC+      A  +   M+ + ++ D+ +Y  LI  FC++G +  +   ++ ++ DGCL
Sbjct: 337 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCL 396

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           PD   ++ V+  L    K  QA E+ 
Sbjct: 397 PDIVNYNTVLATLCKNGKADQALEIF 422



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+S +  E++ L E M  KG  P+V   + L+ G        +A+ +++++  K  +P++
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEIL-EKFGQPDV 154

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
             Y+ L+NG CK  ++ +A  +LDRM+ +   PD   Y  +I   C  GK   A   LD+
Sbjct: 155 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQ 214

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
           ++     P  +T++  I I  T+++G      + A ++   M +R +  D  TY+++I  
Sbjct: 215 LLSDNCQPTVITYT--ILIEATMLEG----GVDEALKLLDEMLSRGLKPDMFTYNTIIRG 268

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            CK+G + ++  ++  L L GC PD  +++ ++ AL ++ K  +  +L+      KC
Sbjct: 269 MCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 325


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 222/459 (48%), Gaps = 41/459 (8%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++++I  L  A++   A ++L  +           F SI  G  +  +   A  + 
Sbjct: 9   DVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLL 68

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M E  C P+  +Y T+++ L ++  +  A          G  P V + ++L   LCK 
Sbjct: 69  AVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKR 128

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D AF++ +EM   GCTP+  TY TLI+GLC+  K  +A EL + + +    P VVT
Sbjct: 129 -GRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVT 187

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT +++GLC+   +++A+++ E M  +G  P+V TY++LM+GLC+ G   +A  + + M+
Sbjct: 188 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 247

Query: 289 SK--------------------------------RHRPNIVTYSTLLNGLCKEGKLQEAV 316
           SK                                R  P I  Y+ L++G CKEG+L E  
Sbjct: 248 SKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIP 307

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            + + M  +G  P+   Y  ++   C  GK  EA  FL+ M   G  P+ +++       
Sbjct: 308 NVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSY------- 360

Query: 377 NTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N ++ GL K + P  A QV   M    I  D++TY++L+  FCK+     +  I+  ++ 
Sbjct: 361 NIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIK 420

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            G  PD  T++ +++ L    ++  A EL+   L N CV
Sbjct: 421 AGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCV 459



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 184/353 (52%), Gaps = 41/353 (11%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E  + P V + N+LI  LCK S T D A ++  EM +RG TPD+ T+ ++++GLC+ G
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKT-DKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAG 59

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K   A  L   M  + C P+  TY +LI+GLC+ ++V+ A  L +E  S G  P+V TYS
Sbjct: 60  KFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYS 119

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            L DGLCK G   +A EL++ M      PN+VTY+TL++GLCK  K ++A E+L+ +   
Sbjct: 120 ILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSS 179

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G  PD   Y  I+   C  G+  +A   ++ M+  G TP+ +T++        +++GLC+
Sbjct: 180 GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYT-------ALMEGLCR 232

Query: 386 TD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD------------- 431
           T   + A  ++  M ++  + D+L Y SL+  +CK     ++ ++VD             
Sbjct: 233 TGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNA 292

Query: 432 -------------------ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
                              ++   GC+P+  T++ VM  L    K+ +A   L
Sbjct: 293 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFL 345



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 226/477 (47%), Gaps = 84/477 (17%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +++V++A  + D   +   +GF  D  T+S++            A+ L  R         
Sbjct: 93  QQNVDRAKTLVDEFVS---SGFVPDVVTYSIL------------ADGLCKR--------- 128

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
                      GR+    +A  +  +M   GC P   +Y T++  L + ++ + A+    
Sbjct: 129 -----------GRID---EAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLE 174

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            +   G  P V +  +++  LCK  G +D A K+   M  RGCTP   TY  L+ GLCR 
Sbjct: 175 TLVSSGFVPDVVTYTIIVDGLCK-EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRT 233

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR----------------- 247
           G++ EA  +FKEM +K C+   + Y SL+NG C+S   +EA +                 
Sbjct: 234 GRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNAL 293

Query: 248 ---------------LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
                          +FE+M  +G  PN+ TY+ +MDGLCK G   +A   L+ M S   
Sbjct: 294 MDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 353

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            P++V+Y+ +++GL K  K +EA ++LD+M   G+ PDA  Y  +++ FC   ++ +A  
Sbjct: 354 VPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVG 413

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSM----RNRSISVDSL 408
            L  M+  G+ P+ +T+       NT++ GL +T  NR    Y  M    RN  +     
Sbjct: 414 ILKNMIKAGVDPDNVTY-------NTLISGLSQT--NRLGDAYELMHEMLRNGCVVSACT 464

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TY+++I   CK+G + ++  ++D +   G   +  T++  +  L    ++ +A+ LL
Sbjct: 465 TYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLL 521



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 218/486 (44%), Gaps = 67/486 (13%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++GF  D  T+++++  L    +   A  +++ + K  C  +   + ++  G  R  R  
Sbjct: 178 SSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVD 237

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +F +M    C     +Y++++    + ++ K A +    +R     P +   N L+
Sbjct: 238 EAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG---TPYIDVYNALM 294

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G +D    +F +M  RGC P+  TY  +++GLC+ GK+ EA    + M +  C
Sbjct: 295 DGYCKE-GRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 353

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV+Y  +I+GL ++   +EA ++ ++M   G+ P+  TY++LM   CK      A+ 
Sbjct: 354 VPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVG 413

Query: 283 LLQMMISKRHRPNIVTYSTLLNGL------------------------------------ 306
           +L+ MI     P+ VTY+TL++GL                                    
Sbjct: 414 ILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRL 473

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM--------- 357
           CKEG L++A+ ++D M   G++ +   Y   I   C  G+  EA++ L EM         
Sbjct: 474 CKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSY 533

Query: 358 ---VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP---------------NRAFQVYLSMR 399
              ++G     +L  +  +      V+GLC T                 + A  +   M 
Sbjct: 534 TTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMV 593

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            R  S   +TY+ +ITC CK   + K+  + DE+ + G +    +++ ++  L  + + +
Sbjct: 594 QRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGK 653

Query: 460 QAAELL 465
           +A ++L
Sbjct: 654 EALQVL 659



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 173/417 (41%), Gaps = 82/417 (19%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           D++ ++  GY +  R  +   VF+ M   GC P  K+Y  V+  L +  ++  AF F   
Sbjct: 288 DVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLES 347

Query: 146 MREIGIQPCVASLNVLIKALCKNSGT---------------------------------- 171
           M   G  P V S N++I  L K S                                    
Sbjct: 348 MHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEER 407

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV-VTYT 230
            D A  I + M   G  PD+ TY TLI+GL +  ++ +A EL  EM    C  +   TY 
Sbjct: 408 FDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYN 467

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++I+ LC+   +++A+ L + M   GVE N  TY+  +D LCK G   +A  LL  M + 
Sbjct: 468 TIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTL 527

Query: 291 RHRPNIVTYSTLLNGLCKE------------------------------------GKLQE 314
           R     V+Y+T++ GLCK                                      +L E
Sbjct: 528 RDE---VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDE 584

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+ +L+ M  +G  P    Y  +I+C C + K  +A    DEM + GI  + +++++   
Sbjct: 585 ALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV--- 641

Query: 375 IHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
               ++ GLC     + A QV   M +    +D L    L      +G   ++A ++
Sbjct: 642 ----LIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELL 694



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 164/318 (51%), Gaps = 6/318 (1%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           ++ G   D  +++++I  L  A++ + A  +LD++ +         + ++   + +  R 
Sbjct: 349 HSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERF 408

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNV 160
            DA+ +   M + G +P   +Y T+++ L + N+L  A+     M   G +     + N 
Sbjct: 409 DDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNT 468

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I  LCK  G +  A  +   M   G   ++ TY   I+ LC+ G++ EA  L  EM+T 
Sbjct: 469 IIDRLCKE-GCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTL 527

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS-KGVEPNVFTYSSLMDGLCKGGCSSQ 279
                 V+YT++I GLC+++ ++ A +L  EM + KG+     T++ L+D   K     +
Sbjct: 528 R---DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDE 584

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A+ LL++M+ +   P+++TY+ ++  LCK  K+ +A E+ D M ++G+   +  Y  +I 
Sbjct: 585 ALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIY 644

Query: 340 CFCDIGKYQEAANFLDEM 357
             C  G+ +EA   L+EM
Sbjct: 645 GLCGQGRGKEALQVLEEM 662



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 144/310 (46%), Gaps = 24/310 (7%)

Query: 35  FDSATAEYAN----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           FD A     N    G   DN T++ +IS L   N+   A +L+  + +  C       +S
Sbjct: 408 FDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGC------VVS 461

Query: 91  ICRGYGRVHRPL-------DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
            C  Y  +   L        A+ + D M   G E    +Y   +  L +E +L  A    
Sbjct: 462 ACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLL 521

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLC 202
             M  +  +    S   +I  LCK +  +D A K+ REM   +G    S+T+  LI+   
Sbjct: 522 SEMDTLRDE---VSYTTVIIGLCK-AEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFT 577

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           +  ++ EA  L + M  + CSP+V+TY  +I  LC+   V++A  LF+EM  +G+  +  
Sbjct: 578 KTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSV 637

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           +Y+ L+ GLC  G   +A+++L+ M S     + +    L   L  +G+ +EA E+L RM
Sbjct: 638 SYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697

Query: 323 --KLQGLKPD 330
             K+  L  D
Sbjct: 698 TTKMDSLSLD 707



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%)

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M  R ++ D  TY+ LI   CK     K++ ++ E+V  G  PD  T++++M  L    K
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 458 MRQAAELLLLELMNKC 473
             +A  LL +     C
Sbjct: 61  FERAHSLLAVMAERNC 76


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  207 bits (527), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 144/489 (29%), Positives = 230/489 (47%), Gaps = 58/489 (11%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           K+    V+ L+    +    L  F   +  +   F+HD S F  M+++LV    F PA++
Sbjct: 75  KLKPHHVVNLLDTHNNTESVLRFFHWVSRTHF--FKHDMSCFVSMLNRLVRDRLFVPADN 132

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           +  R+          + +  CR  G V R +  +   +   +FG   T  S+ T+L  L 
Sbjct: 133 V--RI----------LMIKSCRNEGEVKRVIQVLSEINTTYDFGY--TLYSFSTLLIQLG 178

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           + +   L    Y  M   GI+P + + N +IK LC N G +  A  I   + + G  PD+
Sbjct: 179 KFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILC-NKGKVQEAELIMGHIFHYGACPDT 237

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           +TY +LI G C+ G +  A E+F  M    C P  VTY++LINGLC    +EEAM + EE
Sbjct: 238 FTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEE 297

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M  KG+EP V  Y+  +  LC  G S +A++LL  M  +   PN+ TY+ L++GL ++GK
Sbjct: 298 MIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGK 357

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGK----------------------------------- 336
            + A+ +  +M   GL P A  Y                                     
Sbjct: 358 FEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNV 417

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL 396
           II  FC IG  Q+A    D+M+  G +PN +T++  I IH    QG      N A ++  
Sbjct: 418 IIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYN--IIIHIYFKQGYM----NNAMRLLE 471

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+   + +D+ TY++LI+ F + G +  +  + +E+V  G  P+  T++A++       
Sbjct: 472 MMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVA 531

Query: 457 KMRQAAELL 465
           K+  A  L 
Sbjct: 532 KVDDALALF 540



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 224/444 (50%), Gaps = 24/444 (5%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +++ A  +FD    +   G   ++ T+S +I+ L S  +   A D+L+ +  +  + T  
Sbjct: 252 NLDLAFEMFDRMVKD---GCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308

Query: 87  IF----LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            +    +S+C       R  +A+++  KMK+ GC P  ++Y  +++ L  + + ++A   
Sbjct: 309 AYTIPIVSLCDA----GRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGV 364

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           Y  M   G+ P   + + LI  L    G  + A  IF  M +    P++ TY  +I G C
Sbjct: 365 YHKMLADGLVPTAVTYSALINQLYV-EGRFETALTIFEWMLSHDSLPNTETYNVIIKGFC 423

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
            +G I +A  +F +M     SP V+TY  +I+   +   +  AMRL E M+  G++ + +
Sbjct: 424 SIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTW 483

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY++L+ G  +GG    A  L   M+     PN+VTY+ ++NG     K+ +A+ +  +M
Sbjct: 484 TYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKM 543

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
              G  P +G Y  +IS F    +  EA NF  +MV  G+ PN +T++       + + G
Sbjct: 544 VESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYT-------SFIDG 596

Query: 383 LCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LCK    + AF+++  M+ R    +  TYSSLI   C++G    + R++D    DGC P+
Sbjct: 597 LCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLD----DGCEPN 652

Query: 442 EGTWSAVMTALWDRRKMRQAAELL 465
             T++ ++  L  + +  +A +L+
Sbjct: 653 VDTYTTLVRGLCGKGRCYEADQLV 676



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 203/436 (46%), Gaps = 17/436 (3%)

Query: 35  FDSATAEY----ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           F+ A   Y    A+G      T+S +I++L    +F  A  + + +         + +  
Sbjct: 358 FEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNV 417

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           I +G+  +     A  +FD+M + G  P   +Y  ++ I  ++  +  A R    M+  G
Sbjct: 418 IIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNG 477

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           ++    +   LI    +  G ++ AF +F EM   G +P+  TY  +ING   + K+ +A
Sbjct: 478 LKLDTWTYANLISGFSR-GGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDA 536

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             LF +M      P+  TY  +I+G  ++  + EA     +M  +G+ PNV TY+S +DG
Sbjct: 537 LALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDG 596

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LCK G +S A ++   M  + + PN+ TYS+L++GLC+EG+ ++A  +LD     G +P+
Sbjct: 597 LCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLD----DGCEPN 652

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
              Y  ++   C  G+  EA   ++ M   G+ P+         I+  ++ G CK  +  
Sbjct: 653 VDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSE-------EIYRALLVGQCKNLEVE 705

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A +++ SM           Y +LI   CK     K+  +   ++      DE  W+ ++
Sbjct: 706 SALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLL 765

Query: 450 TALWDRRKMRQAAELL 465
             L    +   + ELL
Sbjct: 766 DGLLKEGETDLSLELL 781



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 147/312 (47%), Gaps = 32/312 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            NG + D  T++ +IS      +   A  L + + +         + +I  GY  V +  
Sbjct: 475 GNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVD 534

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F KM E G  P+  +Y  +++   + N++  A  F   M + G+ P V +    I
Sbjct: 535 DALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFI 594

Query: 163 KALCKNSGTMDAAFKIFREMPNR-------------------------------GCTPDS 191
             LCKN G    AFKIF EM  R                               GC P+ 
Sbjct: 595 DGLCKN-GRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNV 653

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY TL+ GLC  G+ YEA +L + M+ K   P+   Y +L+ G C++  VE A+++F+ 
Sbjct: 654 DTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDS 713

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M + G +P +  Y +L+  LCK     +A  + Q M+ K    + V ++ LL+GL KEG+
Sbjct: 714 MVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGE 773

Query: 312 LQEAVEILDRMK 323
              ++E+L  M+
Sbjct: 774 TDLSLELLHVME 785



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 176/399 (44%), Gaps = 49/399 (12%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN----STFSLMISKLVSANQF 66
           T +T + ++  +  E     AL IF+   +       HD+     T++++I    S    
Sbjct: 376 TAVTYSALINQLYVEGRFETALTIFEWMLS-------HDSLPNTETYNVIIKGFCSIGYI 428

Query: 67  RPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
           + A  + D++ K       IT +I + I    G ++   +AMR+ + MK  G +    +Y
Sbjct: 429 QKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMN---NAMRLLEMMKGNGLKLDTWTY 485

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             +++      +L+ AF  +  M E GI P V + N +I         +D A  +F +M 
Sbjct: 486 ANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYL-TVAKVDDALALFWKMV 544

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             G  P S TY  +I+G  +  +I EA+    +M  +   P V+TYTS I+GLC++    
Sbjct: 545 ESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTS 604

Query: 244 EAMRLFEEMRSK-------------------------------GVEPNVFTYSSLMDGLC 272
            A ++F EM+ +                               G EPNV TY++L+ GLC
Sbjct: 605 LAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLC 664

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
             G   +A +L++ M  K  +P+   Y  LL G CK  +++ A++I D M   G +P   
Sbjct: 665 GKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLS 724

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
            Y  +I   C     Q+A      M+      + + W++
Sbjct: 725 DYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTV 763



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 104/259 (40%), Gaps = 32/259 (12%)

Query: 50  NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109
           + T+++MIS     N+   AE+   ++ K+        + S   G  +  R   A ++F 
Sbjct: 552 SGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFH 611

Query: 110 KMK-------------------------------EFGCEPTPKSYITVLAILVEENQLKL 138
           +MK                               + GCEP   +Y T++  L  + +   
Sbjct: 612 EMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYE 671

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +    M++ G+QP       L+   CKN   +++A KIF  M   G  P    Y  LI
Sbjct: 672 ADQLVESMKKKGLQPSEEIYRALLVGQCKNL-EVESALKIFDSMVTTGFQPCLSDYKALI 730

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
             LC+     +A+ +F+ M  K  +   V +T L++GL +    + ++ L   M S+   
Sbjct: 731 CALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCT 790

Query: 259 PNVFTYSSLMDGLCKGGCS 277
            N  T   L   L   GCS
Sbjct: 791 LNFQTRVMLARELSALGCS 809


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  207 bits (527), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 209/416 (50%), Gaps = 12/416 (2%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +A+ +FD   A    G R D  T++ +I+ L    +   A  LL ++ +  C      + 
Sbjct: 186 QAMELFDDMVAR---GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYS 242

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           +I   + +  R  +A+ +F  MK  G  P   +Y +++  L   +Q K A      MR +
Sbjct: 243 TIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSL 302

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            I P + + NVL+  +CK  G +  A  + + M   G  PD  TY +L+ G     ++ E
Sbjct: 303 NIMPDIVTFNVLVDTICK-EGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVE 361

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A++LF  M TK C P V +Y  LING C+ K ++EA +LF EM  +G+ PN  +Y++L+ 
Sbjct: 362 ARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIH 421

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC+ G   +A  L + M +  + PN+ TYS LL+G CK+G   +A  +   M+    KP
Sbjct: 422 GLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKP 481

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-P 388
           +  +Y  +I   C  G  ++A     E+ + G+ PN        +I+ T++ GLCK    
Sbjct: 482 NLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNA-------QIYTTIINGLCKEGLL 534

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           + A + + +M       D ++Y+ +I  F    D  ++ +++ E+   G + D GT
Sbjct: 535 DEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 195/392 (49%), Gaps = 44/392 (11%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M+  G  P   +   ++       ++ LAF     + ++G+QP + +   LI  LCK  
Sbjct: 123 QMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCK-V 181

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G    A ++F +M  RGC PD YTY T+INGLC++G+   A  L K+ME   C P VVTY
Sbjct: 182 GKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTY 241

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           +++I+   + + V EA+ +F  M+ KG+ P++FTY+SL+ GLC      +A  LL  M S
Sbjct: 242 STIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRS 301

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEIL------------------------------ 319
               P+IVT++ L++ +CKEGK+ EA  +L                              
Sbjct: 302 LNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVE 361

Query: 320 -----DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
                D M  +G KPD   Y  +I+ +C + +  EA    +EM+  G+TPN +++     
Sbjct: 362 ARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSY----- 416

Query: 375 IHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             NT++ GLC+    R A  ++ +M       +  TYS L+  FCK+G   K+ R+   +
Sbjct: 417 --NTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAM 474

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
                 P+   ++ ++ A+     +R A +L 
Sbjct: 475 QSTYSKPNLVMYNILIDAMCKSGNLRDARKLF 506



 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 207/420 (49%), Gaps = 9/420 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T S++I+      +   A  +L ++ K     T   F ++     +V +   A
Sbjct: 128 GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQA 187

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M +FD M   GC P   +Y T++  L +  +   A    + M E G QP V + + +I +
Sbjct: 188 MELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDS 247

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K+   ++ A  IF  M  +G +PD +TY +LI GLC   +  EA  L  EM +    P
Sbjct: 248 HRKDR-RVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMP 306

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VT+  L++ +C+   V EA  + + M   GVEP+V TYSSLM G        +A +L 
Sbjct: 307 DIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLF 366

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             MI+K  +P++ +Y+ L+NG CK  ++ EA ++ + M  QGL P+   Y  +I   C +
Sbjct: 367 DAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQL 426

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G  +EA N    M   G  PN  T+S+       ++ G CK     +AF+++ +M++   
Sbjct: 427 GSLREARNLFKNMHTNGNLPNLFTYSI-------LLDGFCKQGYFGKAFRLFRAMQSTYS 479

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             + + Y+ LI   CK G++  + ++  EL + G  P+   ++ ++  L     + +A E
Sbjct: 480 KPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALE 539



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 178/328 (54%), Gaps = 8/328 (2%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A   + HM      PC+     L+ A+ K     D    + ++M   G +P+ YT   LI
Sbjct: 81  ALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILI 140

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           N    L ++  A  +  ++      PT+VT+T+LIN LC+     +AM LF++M ++G  
Sbjct: 141 NCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCR 200

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P+V+TY+++++GLCK G ++ A  LL+ M     +PN+VTYST+++   K+ ++ EA++I
Sbjct: 201 PDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDI 260

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK++G+ PD   Y  +I   C+  +++EA+  L+EM    I P+ +T+       N 
Sbjct: 261 FSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTF-------NV 313

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           +V  +CK    + A  V  +M    +  D +TYSSL+  +  + ++ ++ ++ D ++  G
Sbjct: 314 LVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG 373

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
           C PD  +++ ++      +++ +A +L 
Sbjct: 374 CKPDVFSYNILINGYCKVKRIDEAKQLF 401



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 157/296 (53%), Gaps = 9/296 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK-ELFKEMETKACSPTVVTYT 230
           +D A   F  M +R   P    +  L++ + ++G+ Y+    L K+ME    SP + T +
Sbjct: 78  IDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLS 137

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN     + V+ A  +  ++   G++P + T+++L++ LCK G  +QAMEL   M+++
Sbjct: 138 ILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVAR 197

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             RP++ TY+T++NGLCK G+   A  +L +M+  G +P+   Y  II       +  EA
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEA 257

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
            +    M + GI+P+  T+       N+++QGLC     +     L+ MR+ +I  D +T
Sbjct: 258 LDIFSYMKVKGISPDIFTY-------NSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVT 310

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ L+   CK+G + ++  ++  +   G  PD  T+S++M     R ++ +A +L 
Sbjct: 311 FNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLF 366



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 121/251 (48%), Gaps = 4/251 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++       +V +A  +FD+   +   G + D  +++++I+      +   A+ L
Sbjct: 344 VTYSSLMYGYSLRSEVVEARKLFDAMITK---GCKPDVFSYNILINGYCKVKRIDEAKQL 400

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            + +  +        + ++  G  ++    +A  +F  M   G  P   +Y  +L    +
Sbjct: 401 FNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCK 460

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +     AFR +R M+    +P +   N+LI A+CK SG +  A K+F E+  +G  P++ 
Sbjct: 461 QGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCK-SGNLRDARKLFSELFVKGLQPNAQ 519

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
            Y T+INGLC+ G + EA E F+ ME   C P  ++Y  +I G    K    A++L  EM
Sbjct: 520 IYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEM 579

Query: 253 RSKGVEPNVFT 263
           R KG   +V T
Sbjct: 580 RDKGFIADVGT 590



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 42/198 (21%)

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV-EILDRMKLQGL 327
           D  C       A+     M+ ++  P I+ ++ LL+ + K G+  + V  +  +M+L GL
Sbjct: 70  DDACSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGL 129

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            P+      +I+CF  + +   A + L +++  G+ P             T+V       
Sbjct: 130 SPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQP-------------TIV------- 169

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
                                T+++LI   CK G   ++  + D++V  GC PD  T++ 
Sbjct: 170 ---------------------TFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTT 208

Query: 448 VMTALWDRRKMRQAAELL 465
           ++  L    +   AA LL
Sbjct: 209 IINGLCKIGETAAAAGLL 226


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  207 bits (527), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 241/455 (52%), Gaps = 24/455 (5%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL  I  +  V+KAL +     +    G   D  +++ ++  L  A ++   ++L++ + 
Sbjct: 198 VLNAICDQGSVDKALHLLRDLPS---FGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMV 254

Query: 78  KEKCD---ITEDIFLS-ICRG--YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           +  C    +T +  +S +CR   + RVH       V  +M E GC P  + Y T++  + 
Sbjct: 255 RMACPPNIVTFNTLISYLCRNGLFERVHE------VLAQMAEHGCTPDIRMYATIIDGIC 308

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +E  LK+A      M   G++P V   N L+K LC ++   +   ++  EM ++ C  D 
Sbjct: 309 KEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLC-SAERWEETEELLAEMFDKDCPLDD 367

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            T+  L++  C+ G +    EL ++M    C P V+TYT++ING C+   ++EA+ L + 
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M + G +PN  +Y+ ++ GLC       A +L+  MI +    N +T++TL+N LCK+G 
Sbjct: 428 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +++A+E+L +M + G  PD   Y  +I      GK  EA   L+ MV  G++PN +    
Sbjct: 488 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTI---- 543

Query: 372 HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
              I++++   L +    N+  Q++ ++++ +I  D++ Y+++I+  CK+G+  ++   +
Sbjct: 544 ---IYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFL 600

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +V  GC+P+E T++ ++  L     +++A E+L
Sbjct: 601 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEML 635



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 226/496 (45%), Gaps = 39/496 (7%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   V++ + A   +  AL + D        G       + +++        FR A  +L
Sbjct: 124 TYFPVVRALCARGRIADALAVLDEMPRR---GCAPIPPMYHVILEAACRGGGFRSAVRVL 180

Query: 74  DRVNKEKC--DITE-DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           + ++   C  D+   ++ L+     G V + L  +R    +  FGCEP   SY  VL  L
Sbjct: 181 EDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLR---DLPSFGCEPDVVSYNAVLKGL 237

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
               +          M  +   P + + N LI  LC+N G  +   ++  +M   GCTPD
Sbjct: 238 CMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRN-GLFERVHEVLAQMAEHGCTPD 296

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
              Y T+I+G+C+ G +  A E+   M +    P VV Y +L+ GLC ++  EE   L  
Sbjct: 297 IRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLA 356

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EM  K    +  T++ L+D  C+ G   + +ELL+ M+     P+++TY+T++NG CKEG
Sbjct: 357 EMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEG 416

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            + EAV +L  M   G KP+   Y  ++   C   ++ +A + + +M+  G   N +T++
Sbjct: 417 LIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFN 476

Query: 371 LHIRI----------------------------HNTVVQGLCKT-DPNRAFQVYLSMRNR 401
             I                              ++TV+ GL K    + A ++   M N+
Sbjct: 477 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNK 536

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +S +++ YSS+ +   ++G I+K  ++ D +       D   ++AV+++L  R +  +A
Sbjct: 537 GMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERA 596

Query: 462 AELLLLELMNKCVEAE 477
            E L   + + CV  E
Sbjct: 597 IEFLAYMVSSGCVPNE 612



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 171/357 (47%), Gaps = 9/357 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   +Y  V+  L    ++  A      M   G  P     +V+++A C+  G   +A +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGG-FRSAVR 178

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  ++  RGC  D      ++N +C  G + +A  L +++ +  C P VV+Y +++ GLC
Sbjct: 179 VLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLC 238

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
            +K       L EEM      PN+ T+++L+  LC+ G   +  E+L  M      P+I 
Sbjct: 239 MAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIR 298

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            Y+T+++G+CKEG L+ A EIL+RM   GLKP+   Y  ++   C   +++E    L EM
Sbjct: 299 MYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 358

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITC 416
                  + +T+       N +V   C+    +R  ++   M       D +TY+++I  
Sbjct: 359 FDKDCPLDDVTF-------NILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVING 411

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           FCK+G I ++  ++  +   GC P+  +++ V+  L    +   A +L+   +   C
Sbjct: 412 FCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGC 468



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 159/320 (49%), Gaps = 7/320 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G + +   ++ ++  L SA ++   E+LL  +  + C   D+T +I +      G V R 
Sbjct: 327 GLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDR- 385

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              + + ++M   GC P   +Y TV+    +E  +  A    + M   G +P   S  ++
Sbjct: 386 --VIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIV 443

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K LC     +DA   +  +M  +GC  +  T+ TLIN LC+ G + +A EL K+M    
Sbjct: 444 LKGLCSAERWVDAE-DLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 502

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP +++Y+++I+GL ++   +EA+ L   M +KG+ PN   YSS+   L + G  ++ +
Sbjct: 503 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI 562

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   +     R + V Y+ +++ LCK G+ + A+E L  M   G  P+   Y  +I   
Sbjct: 563 QMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL 622

Query: 342 CDIGKYQEAANFLDEMVLGG 361
              G  +EA   L E+   G
Sbjct: 623 ASEGFVKEAQEMLTELCSKG 642



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 111/238 (46%), Gaps = 11/238 (4%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +++ G C++  +E A RL   +    V PN +TY  ++  LC  G  + A+ +L  M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   P    Y  +L   C+ G  + AV +L+ +  +G   D G    +++  CD G   
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDS 407
           +A + L ++   G  P+ +++       N V++GLC        Q  +  M   +   + 
Sbjct: 210 KALHLLRDLPSFGCEPDVVSY-------NAVLKGLCMAKRWGCVQELMEEMVRMACPPNI 262

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +T+++LI+  C+ G   +   ++ ++   GC PD   ++ ++  +     ++ A E+L
Sbjct: 263 VTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEIL 320


>gi|255564126|ref|XP_002523060.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537622|gb|EEF39245.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 168

 Score =  207 bits (527), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 137/222 (61%), Gaps = 63/222 (28%)

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL--- 302
           MRLF +M+SKG+EPNVFTYSSLMDGLCK GCSSQA+ELL+MM +KRH+PN++TY+TL   
Sbjct: 1   MRLFHDMKSKGIEPNVFTYSSLMDGLCKDGCSSQALELLKMMKNKRHKPNLITYNTLING 60

Query: 303 -----LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
                +NGLC+  KLQEA   LD M                                   
Sbjct: 61  LYGKIINGLCENSKLQEAANFLDEM----------------------------------- 85

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
           VL GI+PNRLTWSLH+R +N VVQGLC + DPNRAFQ+YLS+R                 
Sbjct: 86  VLAGISPNRLTWSLHVRTNNIVVQGLCSSGDPNRAFQLYLSLRT---------------- 129

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
              KGD++K+ R+VDE+VLDGC+PD+ T + V+    DRRK+
Sbjct: 130 ---KGDLYKAIRLVDEMVLDGCVPDQLTLTIVLCGFLDRRKV 168



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 34/183 (18%)

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL--- 232
            ++F +M ++G  P+ +TY +L++GLC+ G   +A EL K M+ K   P ++TY +L   
Sbjct: 1   MRLFHDMKSKGIEPNVFTYSSLMDGLCKDGCSSQALELLKMMKNKRHKPNLITYNTLING 60

Query: 233 -----INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS-------SLMDGLCKGGCSSQA 280
                INGLC++  ++EA    +EM   G+ PN  T+S        ++ GLC  G  ++A
Sbjct: 61  LYGKIINGLCENSKLQEAANFLDEMVLAGISPNRLTWSLHVRTNNIVVQGLCSSGDPNRA 120

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +L   + +K                   G L +A+ ++D M L G  PD      ++  
Sbjct: 121 FQLYLSLRTK-------------------GDLYKAIRLVDEMVLDGCVPDQLTLTIVLCG 161

Query: 341 FCD 343
           F D
Sbjct: 162 FLD 164



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 38/186 (20%)

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           MR+F  MK  G EP   +Y +++  L ++     A    + M+    +P + + N LI  
Sbjct: 1   MRLFHDMKSKGIEPNVFTYSSLMDGLCKDGCSSQALELLKMMKNKRHKPNLITYNTLING 60

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L                            YG +INGLC   K+ EA     EM     SP
Sbjct: 61  L----------------------------YGKIINGLCENSKLQEAANFLDEMVLAGISP 92

Query: 225 TVVTYT-------SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
             +T++        ++ GLC S     A +L+  +R+KG   +++    L+D +   GC 
Sbjct: 93  NRLTWSLHVRTNNIVVQGLCSSGDPNRAFQLYLSLRTKG---DLYKAIRLVDEMVLDGCV 149

Query: 278 SQAMEL 283
              + L
Sbjct: 150 PDQLTL 155


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 218/433 (50%), Gaps = 13/433 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D   ++ +IS L  A +   A   L  +           F +   GY +  +  +
Sbjct: 214 SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTE 273

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A + FD+M + G  P    Y  ++    +   L  A   +RH+  +G+ P V + +  I 
Sbjct: 274 AAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIH 333

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L KN G +  A K+F E+  +G  PD +TY +LI+G C+ G++ +A EL  EM  K  +
Sbjct: 334 GLLKN-GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 392

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P +  Y +L++GLC+S  ++ A +LF+ M  KG+EP+  TYS+++DG CK    ++A  L
Sbjct: 393 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 452

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M SK  +P+   Y+ L++G CKEG +++A+ +   M  +G       +  +I  +C 
Sbjct: 453 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCK 511

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH---------NTVVQGLCKTD--PNRAF 392
             K QEA+    EM+   I P+ +T++  I  H         N + + + + +   +  F
Sbjct: 512 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVF 571

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            ++  M  + +  D +TY  +I   CK+ ++ ++ ++ DE+V  G L        ++TAL
Sbjct: 572 ALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITAL 631

Query: 453 WDRRKMRQAAELL 465
             R  + +A++LL
Sbjct: 632 CKREDLTEASKLL 644



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 214/439 (48%), Gaps = 27/439 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  TF   I       +   A    D +          ++  +  G+ +    ++A
Sbjct: 250 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEA 309

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F  +   G  P  ++    +  L++  +++ A + +  ++E G+ P V + + LI  
Sbjct: 310 LSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISG 369

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G ++ AF++  EM  +G  P+ + Y  L++GLC+ G I  A++LF  M  K   P
Sbjct: 370 FCKQ-GEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEP 428

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY+++I+G C+S++V EA  LF EM SKGV+P+ F Y++L+ G CK G   +AM L 
Sbjct: 429 DSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLF 488

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+ K     + +++TL++G CK  K+QEA ++   M  + + PD   Y  +I   C  
Sbjct: 489 REMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKA 547

Query: 345 GKYQEAA-----------------NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           GK +EA                     ++MV  G+ P+ +T+ L I  H       CK D
Sbjct: 548 GKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAH-------CKED 600

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
               AF++   +  + +      +  LIT  CK+ D+ ++++++DE+   G  P     S
Sbjct: 601 NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACS 660

Query: 447 AVMTALWDRRKMRQAAELL 465
            ++ +  +  KM +A  + 
Sbjct: 661 TLVRSFHEAGKMDEATRVF 679



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 199/404 (49%), Gaps = 30/404 (7%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           I  G  R  R  +A   F++M++ G +P   +   ++   + E  +    R    M   G
Sbjct: 16  ITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG 75

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I   + + NVLI  LCK  G M+ A +I + M   GC P+S T+  LI G CR   +  A
Sbjct: 76  IPINLITYNVLIHGLCK-FGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRA 134

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            EL  EME +   P+ V+Y ++INGLC  K +  A +L E+M   G++PNV  YS+L+ G
Sbjct: 135 LELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMG 194

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
               G   +A  LL  M      P+I  Y+ +++ L K GK++EA   L  ++ +GLKPD
Sbjct: 195 YASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 254

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH-------------- 376
           A  +G  I  +   GK  EAA + DEM+  G+ PN   +++ I  H              
Sbjct: 255 AVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR 314

Query: 377 --------------NTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
                         +  + GL K      A +V+  ++ + +  D  TYSSLI+ FCK+G
Sbjct: 315 HLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG 374

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ K+  + DE+ L G  P+   ++A++  L     +++A +L 
Sbjct: 375 EVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLF 418



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 225/463 (48%), Gaps = 13/463 (2%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           KT  K      SA +   +R E D+++ L I D   +    G   +  T++++I  L   
Sbjct: 38  KTGLKPDYNACSALIDGFMR-EGDIDEVLRIKDVMVS---CGIPINLITYNVLIHGLCKF 93

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
            +   A ++L  +    C      F  +  GY R H    A+ + D+M++    P+  SY
Sbjct: 94  GKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 153

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             ++  L     L LA +    M   G++P V   + LI     + G ++ A ++   M 
Sbjct: 154 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYA-SEGRIEEARRLLDGMS 212

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             G  PD + Y  +I+ L + GK+ EA     E++ +   P  VT+ + I G  ++  + 
Sbjct: 213 CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMT 272

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           EA + F+EM   G+ PN   Y+ L++G  K G   +A+ + + + +    P++ T S  +
Sbjct: 273 EAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFI 332

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +GL K G++QEA+++   +K +GL PD   Y  +IS FC  G+ ++A    DEM L GI 
Sbjct: 333 HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 392

Query: 364 PNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           PN       I I+N +V GLCK+ D  RA +++  M  + +  DS+TYS++I  +CK  +
Sbjct: 393 PN-------IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN 445

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + ++  +  E+   G  P    ++A++        M +A  L 
Sbjct: 446 VAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLF 488



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 212/442 (47%), Gaps = 33/442 (7%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFL--SICRGYGRVHR 100
           +G + +   +S +I    S  +   A  LLD ++   C  +  DIF   +I     +  +
Sbjct: 179 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS---CSGVAPDIFCYNAIISCLSKAGK 235

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A     +++  G +P   ++   +    +  ++  A +++  M + G+ P      V
Sbjct: 236 MEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTV 295

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI    K +G +  A  IFR +   G  PD  T    I+GL + G++ EA ++F E++ K
Sbjct: 296 LINGHFK-AGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK 354

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P V TY+SLI+G C+   VE+A  L +EM  KG+ PN+F Y++L+DGLCK G   +A
Sbjct: 355 GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRA 414

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +L   M  K   P+ VTYST+++G CK   + EA  +   M  +G++P + +Y  ++  
Sbjct: 415 RKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 474

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
            C  G  ++A N   EM+  G      T S      NT++ G CK+     A Q++  M 
Sbjct: 475 CCKEGDMEKAMNLFREMLQKGFAT---TLSF-----NTLIDGYCKSCKIQEASQLFQEMI 526

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDE-----------------LVLDGCLPDE 442
            + I  D +TY+++I   CK G + ++  +  E                 +V  G  PDE
Sbjct: 527 AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDE 586

Query: 443 GTWSAVMTALWDRRKMRQAAEL 464
            T+  V+ A      + +A +L
Sbjct: 587 VTYGLVIYAHCKEDNLVEAFKL 608



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 179/391 (45%), Gaps = 63/391 (16%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           GRV    +A++VF ++KE G  P   +Y ++++   ++ +++ AF  +  M   GI P +
Sbjct: 339 GRVQ---EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 395

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
              N L+  LCK SG +  A K+F  MP +G  PDS TY T+I+G C+   + EA  LF 
Sbjct: 396 FIYNALVDGLCK-SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 454

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM +K   P    Y +L++G C+   +E+AM LF EM  KG      ++++L+DG CK  
Sbjct: 455 EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSC 513

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK------------------------ 311
              +A +L Q MI+K+  P+ VTY+T+++  CK GK                        
Sbjct: 514 KIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFAL 573

Query: 312 ----------------------------LQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
                                       L EA ++ D +  +G+     ++  +I+  C 
Sbjct: 574 FEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCK 633

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
                EA+  LDEM   G+ P+    S  +R  +   +       + A +V+  +++  +
Sbjct: 634 REDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGK------MDEATRVFEGVKSLGL 687

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             D+ T   L+       D   +  ++ +LV
Sbjct: 688 VPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 718



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 170/366 (46%), Gaps = 38/366 (10%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DITE 85
           V +AL +F     +   G   D  T+S +IS      +   A +L D    E C   I  
Sbjct: 341 VQEALKVFSELKEK---GLVPDVFTYSSLISGFCKQGEVEKAFELHD----EMCLKGIAP 393

Query: 86  DIFL------SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
           +IF+       +C+  G + R   A ++FD M E G EP   +Y T++    +   +  A
Sbjct: 394 NIFIYNALVDGLCKS-GDIQR---ARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 449

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
           F  +  M   G+QP     N L+   CK  G M+ A  +FREM  +G    + ++ TLI+
Sbjct: 450 FSLFHEMPSKGVQPHSFVYNALVHGCCK-EGDMEKAMNLFREMLQKGFAT-TLSFNTLID 507

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR------ 253
           G C+  KI EA +LF+EM  K   P  VTYT++I+  C++  +EEA  LF+EM+      
Sbjct: 508 GYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIV 567

Query: 254 -----------SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
                      +KGV+P+  TY  ++   CK     +A +L   ++ K        +  L
Sbjct: 568 DTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLL 627

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           +  LCK   L EA ++LD M   GLKP       ++  F + GK  EA    + +   G+
Sbjct: 628 ITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGL 687

Query: 363 TPNRLT 368
            P+  T
Sbjct: 688 VPDTTT 693



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 127/295 (43%), Gaps = 20/295 (6%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+ +A  +FD    +   G   D+ T+S MI     +     A  L   +  +       
Sbjct: 410 DIQRARKLFDGMPEK---GLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSF 466

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ ++  G  +      AM +F +M + G   T  S+ T++    +  +++ A + ++ M
Sbjct: 467 VYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEM 525

Query: 147 REIGIQP------------CVAS----LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
               I P            C A      N+L K + + +  +D  F +F +M  +G  PD
Sbjct: 526 IAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPD 585

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TYG +I   C+   + EA +L  E+  K        +  LI  LC+ + + EA +L +
Sbjct: 586 EVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLD 645

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           EM   G++P++   S+L+    + G   +A  + + + S    P+  T   L+NG
Sbjct: 646 EMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNG 700



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 18/218 (8%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL------------AILVEENQ 135
           F ++  GY +  +  +A ++F +M      P   +Y TV+             +L +E Q
Sbjct: 502 FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQ 561

Query: 136 -----LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
                +   F  +  M   G++P   +  ++I A CK    ++A FK+  E+  +G    
Sbjct: 562 ERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEA-FKLRDEVVGKGMLTK 620

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
              +  LI  LC+   + EA +L  EM      P++   ++L+    ++  ++EA R+FE
Sbjct: 621 GTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFE 680

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
            ++S G+ P+  T   L++G      S  A  L++ ++
Sbjct: 681 GVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 718



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 65/172 (37%), Gaps = 41/172 (23%)

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN  TY+ +  GLC+  ++ EA    + M+  GLKPD      +I  F   G   E    
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
            D MV  GI                                          ++ +TY+ L
Sbjct: 68  KDVMVSCGI-----------------------------------------PINLITYNVL 86

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I   CK G + K+A I+  ++  GC P+  T+  ++        M +A ELL
Sbjct: 87  IHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELL 138


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 214/416 (51%), Gaps = 12/416 (2%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +A+ +FD   A    G + D+ T++ +I+ L    +   A  L  ++ +  C +    + 
Sbjct: 63  QAVELFDDMVAR---GCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYS 119

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++     +  R  +A+ +F  MK     PT  +Y +++  L   ++ K A      M  +
Sbjct: 120 TLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSL 179

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            I P V + NVL+   CK  G + AA  + + M   G  PD  TY +L+ G     ++ E
Sbjct: 180 NIMPNVVTFNVLVDTFCK-EGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVE 238

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A++LF  M TK C P V +Y+ LING C++K ++EA +LF EM  +G  PN  +Y++L+ 
Sbjct: 239 ARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIH 298

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC+ G   +A +L + M +  + PN+ TY+ LL+G CK+G L +A  +   M+   LKP
Sbjct: 299 GLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKP 358

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-P 388
           +  +Y  +++  C  G  ++A     E+ + G+ PN       ++I+ T++ GLCK    
Sbjct: 359 NLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPN-------VQIYTTIINGLCKEGLL 411

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           + A + + +M +     D  +Y+ +I  F +  D  ++  ++ E+   G + D GT
Sbjct: 412 DEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 188/356 (52%), Gaps = 9/356 (2%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M+  G  P   +   ++    +  ++ L F       ++G+QP + +   LI  L K  G
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGK-VG 59

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
               A ++F +M  RGC PD YTY T+INGLC++G+   A  LFK+ME   C   VVTY+
Sbjct: 60  KFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYS 119

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LI+ LC+ + V EA+ +F  M++K + P +FTY+SL+ GLC      +A  LL  M S 
Sbjct: 120 TLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSL 179

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN+VT++ L++  CKEGK+  A  +L  M   G++PD   Y  ++  +    +  EA
Sbjct: 180 NIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEA 239

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
               D M+  G  P+  ++S+       ++ G CK    + A Q++  M ++  + ++++
Sbjct: 240 RKLFDVMITKGCKPDVFSYSI-------LINGYCKAKRIDEAKQLFNEMIHQGSTPNNVS 292

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y++LI   C+ G + ++  +   +  +G LP+  T++ ++     +  + +A  L 
Sbjct: 293 YNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLF 348



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 183/363 (50%), Gaps = 9/363 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              V  K  + G +PT  ++ T++  L +  +   A   +  M   G QP   +   +I 
Sbjct: 29  GFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIIN 88

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK   T  AA  +F++M   GC  +  TY TLI+ LC+  ++ EA ++F  M+ K  S
Sbjct: 89  GLCKIGETALAA-GLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDIS 147

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PT+ TYTSLI GLC     +EA  L  EM S  + PNV T++ L+D  CK G    A  +
Sbjct: 148 PTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGV 207

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ M      P++VTY++L+ G     ++ EA ++ D M  +G KPD   Y  +I+ +C 
Sbjct: 208 LKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCK 267

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRS 402
             +  EA    +EM+  G TPN +++       NT++ GLC+    R  Q ++ +M    
Sbjct: 268 AKRIDEAKQLFNEMIHQGSTPNNVSY-------NTLIHGLCQLGRLREAQDLFKNMHTNG 320

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              +  TY+ L+  FCK+G + K+ R+   +      P+   ++ ++ A+     ++ A 
Sbjct: 321 NLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDAR 380

Query: 463 ELL 465
           EL 
Sbjct: 381 ELF 383


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 235/510 (46%), Gaps = 101/510 (19%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF     TFS ++  L   ++   A DL  ++    C      F ++  G  R  R ++A
Sbjct: 143 GFHPTVVTFSTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEA 198

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-------------- 150
           + + D+M E G +P   +Y T++  + +      A    R M E+               
Sbjct: 199 VALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERR 258

Query: 151 ----------------------------IQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
                                       I P V + N LI A  K  G    A +++ EM
Sbjct: 259 TCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVK-EGKFFEAEELYDEM 317

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             RG  P + TY ++I+G C+  ++  A+ +F  M TK CSP ++T+ +LI G C++K V
Sbjct: 318 LPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRV 377

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           ++ ++L  EM   G+  N  TY++L+ G C+ G  + A +LLQ M+S    PN+VT +TL
Sbjct: 378 DDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTL 437

Query: 303 LNGLCKEGKLQEAVEILDRMK-----------LQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           L+GLC  GKL++A+E+   M+             G++PD   Y  +IS   + GK+ EA 
Sbjct: 438 LDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 497

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTY 410
              +EM   GI P+ +T+       N+V+ GLCK +  + A Q++ SM ++S S + +T+
Sbjct: 498 ELYEEMPHRGIVPDTITY-------NSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 550

Query: 411 SSLITCFCKKG-----------------------------------DIHKSARIVDELVL 435
           ++LI  +CK G                                   +I+ +  I  E++ 
Sbjct: 551 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMA 610

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G  PD  T   ++T LW + ++++A  +L
Sbjct: 611 SGVYPDTITIRNMLTGLWSKEELKRAVAML 640



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 205/414 (49%), Gaps = 43/414 (10%)

Query: 89  LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
           L +  G+  +    DA+ +F  M      P+   +  ++ ++V   +L +    +R M E
Sbjct: 47  LKLRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKM-E 105

Query: 149 IGIQPCVA-SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           +   PC A S  +L+K  C  S  +  A   F ++   G  P   T+ TL++GLC   +I
Sbjct: 106 MRRVPCNAYSFTILMKCFCSCS-KLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRI 164

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA +LF +M    C P VVT+T+L+NGLC+   V EA+ L + M   G++PN  TY ++
Sbjct: 165 SEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTI 220

Query: 268 MDGLCKGGCSSQAMELLQMMISKRH-RPNIVTY-----STLLNGLCKEGKLQEAVEILDR 321
           +DG+CK G +  A+ LL+ M    H +PN+V +     + ++NG C  G+  EA ++L  
Sbjct: 221 VDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQE 280

Query: 322 M-KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------ 374
           M + + + PD   Y  +I+ F   GK+ EA    DEM+  GI P+ +T+S  I       
Sbjct: 281 MLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQN 340

Query: 375 ----------------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYS 411
                                   NT++ G C+    +   ++   M    +  +++TY+
Sbjct: 341 RLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYT 400

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +LI  FC+ GD++ +  ++ E+V  G  P+  T + ++  L D  K++ A E+ 
Sbjct: 401 TLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMF 454



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 153/305 (50%), Gaps = 9/305 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L+  + R+G++     L ++ME +       ++T 
Sbjct: 59  LEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTI 118

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+   C    +  A+  F ++   G  P V T+S+L+ GLC     S+A++L   M    
Sbjct: 119 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMC--- 175

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +PN+VT++TL+NGLC+EG++ EAV +LDRM   GL+P+   YG I+   C +G    A 
Sbjct: 176 -KPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSAL 234

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS--MRNRSISVDSL 408
           N L +M  +  I PN + W L  R    ++ G C +      Q  L   +  + IS D +
Sbjct: 235 NLLRKMEEVSHIKPNVVIWPLERR--TCMINGFCSSGRWSEAQQLLQEMLERKKISPDVV 292

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY++LI  F K+G   ++  + DE++  G +P   T+S+++     + ++  A  +  L 
Sbjct: 293 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLM 352

Query: 469 LMNKC 473
               C
Sbjct: 353 ATKGC 357



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 149/318 (46%), Gaps = 45/318 (14%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S MI      N+   AE +   +  + C      F ++  GY R  R  D +++  +M
Sbjct: 328 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEM 387

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E G      +Y T++    +   L  A    + M   G+ P V + N L+  LC N   
Sbjct: 388 TEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKL 447

Query: 172 MDA---------------------------------------------AFKIFREMPNRG 186
            DA                                             A +++ EMP+RG
Sbjct: 448 KDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 507

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             PD+ TY ++I+GLC+  ++ EA ++F  M +K+ SP VVT+T+LING C++  V++ +
Sbjct: 508 IVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGL 567

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            LF EM  +G+  N  TY +L+ G  K G  + A+++ Q M++    P+ +T   +L GL
Sbjct: 568 ELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGL 627

Query: 307 CKEGKLQEAVEILDRMKL 324
             + +L+ AV +L+ +++
Sbjct: 628 WSKEELKRAVAMLEDLQM 645



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 36/210 (17%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++++IS L++  +F  AE+L                               
Sbjct: 471 NGVEPDVQTYNILISGLINEGKFLEAEEL------------------------------- 499

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               +++M   G  P   +Y +V+  L ++++L  A + +  M      P V +   LI 
Sbjct: 500 ----YEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 555

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK +G +D   ++F EM  RG   ++ TY TLI+G  ++G I  A ++F+EM      
Sbjct: 556 GYCK-AGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVY 614

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           P  +T  +++ GL   + ++ A+ + E+++
Sbjct: 615 PDTITIRNMLTGLWSKEELKRAVAMLEDLQ 644


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 207/398 (52%), Gaps = 9/398 (2%)

Query: 56  MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG 115
           M+  L S     P E LL  +  E   +  +  + +   YGR ++  DA  +F++ + F 
Sbjct: 1   MLVVLASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFA 60

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C PT  ++  ++ ILV   + + A   Y+ + + G Q    + NVLI+   + SG +D+A
Sbjct: 61  CSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGR-SGQLDSA 119

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            ++FREM  +G  PD YTYG L+N L + G++ EA+  F  M  +  +P + TY  L++ 
Sbjct: 120 MEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDA 179

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
             +   ++ A+ LF EM+ +G +P+V TY+ L+D LC  G    A +L   M      P+
Sbjct: 180 FRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPD 239

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
             TYSTL+NGL K G+++EA ++   M  +G+  D   Y  +++     G        + 
Sbjct: 240 SYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMK 299

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLI 414
           EM   G  P+  ++       NT++  L K + P+ A +V+  M       D ++Y+ LI
Sbjct: 300 EMSRKGFHPDAFSF-------NTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILI 352

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             + + GD  ++ ++++E+V  G +P+  T+++++  L
Sbjct: 353 DSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWL 390



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/479 (29%), Positives = 236/479 (49%), Gaps = 14/479 (2%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           +K M      +    +++LI A    NK+   FD      +         F+ +I  LV+
Sbjct: 18  LKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVN 77

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
           + +F  AE +  ++ ++ C +    +  + R +GR  +   AM +F +MK  G EP   +
Sbjct: 78  SGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYT 137

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y  ++  L +  +++ A  F+  M E G+ P + + N+L+ A  K  G +D A  +F EM
Sbjct: 138 YGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRK-VGQLDMALGLFAEM 196

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             RG  P   TY  L++ LC  G++  A++LF +M    CSP   TY++L+NGL +S  V
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRV 256

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           EEA ++F EM  +GV  ++  Y+SL+  L K G   +  +L++ M  K   P+  +++T+
Sbjct: 257 EEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTI 316

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           ++ L K  K   A E+  RM   G KPD   Y  +I  +   G   +A   L+EMV  G 
Sbjct: 317 MDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF 376

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDP--NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
            P   T+       N+++  L  TD   + AF V   M       D +TY+ L+    K+
Sbjct: 377 IPETKTY-------NSLIHWLA-TDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKR 428

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVD 479
           G+  ++AR+  ++   G  PD  +++  +  L    ++ +A  L+L + M K V   VD
Sbjct: 429 GENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEA--LVLFKDM-KAVGCPVD 484



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 207/408 (50%), Gaps = 9/408 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D   ++++I     + Q   A ++   +  +  +  E  +  +    G+  R  +A
Sbjct: 95  GCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEA 154

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              FD M E G  P   +Y  ++    +  QL +A   +  M+  G QP V + N+L+ A
Sbjct: 155 RSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDA 214

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC ++G + AA K+F +M   GC+PDSYTY TL+NGL + G++ EA ++F+EM  +  + 
Sbjct: 215 LC-SAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAV 273

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +V Y SL+  L ++ +++   +L +EM  KG  P+ F+++++MD L K      A E+ 
Sbjct: 274 DLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVF 333

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+    +P++++Y+ L++   + G   +A ++L+ M   G  P+   Y  +I      
Sbjct: 334 ARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATD 393

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSI 403
           G+  EA   L+EM   G  P+ +T+       N ++  L K   N RA +++  M+++ +
Sbjct: 394 GQVDEAFAVLEEMETAGCRPDVVTY-------NRLMDMLGKRGENQRAARLFQQMKDKGV 446

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             D+L+Y+  I        + ++  +  ++   GC  D+  +  ++ A
Sbjct: 447 EPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRA 494



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 153/340 (45%), Gaps = 43/340 (12%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +D    + +EM   G      T   LI    R  K  +A +LF + E+ ACSPTV  +
Sbjct: 9   GILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAF 68

Query: 230 TSLINGL--------------------CQ---------------SKSVEEAMRLFEEMRS 254
           T LI+ L                    CQ               S  ++ AM +F EM+ 
Sbjct: 69  TKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKI 128

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           KG EP+ +TY  L++ L K G   +A      M+ +   PNI TY+ L++   K G+L  
Sbjct: 129 KGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDM 188

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+ +   MK +G +P    Y  ++   C  G+   A     +M   G +P+  T+S    
Sbjct: 189 ALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYS---- 244

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              T+V GL K+     A +V+  M +R ++VD + Y+SL+    K G++ +  +++ E+
Sbjct: 245 ---TLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM 301

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
              G  PD  +++ +M AL    K   A E+    + + C
Sbjct: 302 SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGC 341



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 13/284 (4%)

Query: 201 LCRLGKIYEAKELFKEM--ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           L   G +   + L KEM  E +   P   T   LI    +     +A  LF +  S    
Sbjct: 5   LASWGILDPLETLLKEMVAEGRPLRPN--TLVKLITAYGRGNKSGDAFDLFNQAESFACS 62

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P V  ++ L+D L   G   +A  + + ++ K  + +   Y+ L+    + G+L  A+E+
Sbjct: 63  PTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEM 122

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK++G +PD   YG +++     G+ QEA +F D M+  G+TPN  T++L +     
Sbjct: 123 FREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRK 182

Query: 379 VVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           V Q       + A  ++  M+ R      +TY+ L+   C  G +  + ++  ++  DGC
Sbjct: 183 VGQ------LDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGC 236

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            PD  T+S ++  L    ++ +A + +  E++++ V   VD+ N
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHK-VFREMVDRGV--AVDLVN 277



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 1/214 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  +F+ ++  L  AN+   A ++  R+ +  C      +  +   Y R      A
Sbjct: 305 GFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQA 364

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++ ++M E G  P  K+Y +++  L  + Q+  AF     M   G +P V + N L+  
Sbjct: 365 RQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDM 424

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L K      AA ++F++M ++G  PD+ +Y   I+GL    ++ EA  LFK+M+   C  
Sbjct: 425 LGKRGENQRAA-RLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPV 483

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
               Y  LI    ++   E   +L  E +   VE
Sbjct: 484 DKAMYRILIRAAHRAGDTELEAQLKHESQFMPVE 517


>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 481

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 228/470 (48%), Gaps = 42/470 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++ + K    AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHSSKTSEHALQFF--RWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ A + F +M +R  +PD  TY T 
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETANRFFEDMKSREISPDVVTYNTX 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVTYT+LI G      V+ A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDXALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++  C  G L  A 
Sbjct: 252 KPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCXSGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           ++L  M    +  +AG YG +I  FC  G+Y +A   LD+++   I   R   +LH+   
Sbjct: 312 DVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIIL-RPQSTLHLEPS 370

Query: 375 IHNTVVQGLCKT-----------------------------------DPNRAFQVYLSMR 399
            +N  ++ LC                                      P+ AF++   M 
Sbjct: 371 AYNPXIEYLCNNGQAXKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFELLKIML 430

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            R +  +   Y+SL+  + KK +   +   +D ++ +  LPD   + +VM
Sbjct: 431 RRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSSLFRSVM 480



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 162/347 (46%), Gaps = 14/347 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    A    + M S+   P++VTY+T +NG  +  K++EA + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTXINGYYRVKKMEEAEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +   A   ++EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYVSVDQVDXALRLVEEMKGFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDPNRAFQVYL-SMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +     +V L  M ++ ++  D+  +  LI+  C  G++  +A ++  +   
Sbjct: 261 LLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCXSGNLDAAADVLKAMXRL 320

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
               + G +  ++       +  +A +LL     +K +E ++ ++ Q
Sbjct: 321 SVPTEAGHYGVLIENFCKXGQYDKAVKLL-----DKLIEKDIILRPQ 362


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/408 (31%), Positives = 213/408 (52%), Gaps = 31/408 (7%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            +++ D++K  G +P    Y  ++ +L +  ++  A +  R MR+ G+ P       +I 
Sbjct: 296 VLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVIS 355

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G + AA K+F EM  +   PD  TY ++I+G+C+ GK+ EA+E+F EM  K   
Sbjct: 356 GFCK-LGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLE 414

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTYT+LI+G C++  ++EA  +  +M  KG+ PNV TY++L DGLCK G    A EL
Sbjct: 415 PDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANEL 474

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M  K  +PN+ TY+T++NGLCK G +++ V++++ M L G  PD   Y  ++  +C 
Sbjct: 475 LHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCK 534

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT----------------------WSLHIRI------ 375
           +G+  +A   L  M+   + P  +T                      W L   I      
Sbjct: 535 MGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATT 594

Query: 376 HNTVVQGLCKTDPNRA-FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            N++++  C  +  RA  ++Y +M +R +  DS TY+ LI   CK  ++ ++  +  E+V
Sbjct: 595 FNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMV 654

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
             G      T+ A++   + R+K  +A + L  E+    + AE DI +
Sbjct: 655 EKGYSVTAATYDALIRGFYKRKKFVEARK-LFEEMRKHGLVAEKDIYD 701



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 253/486 (52%), Gaps = 42/486 (8%)

Query: 15  SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL- 73
           S  +  LI  + D    L +F+ A ++    F     +  +++   V++N  + A+ L+ 
Sbjct: 80  SHLIWVLINLKNDYPLVLNLFNWAKSQSQQQFHPTLESLCIVVHLSVASNDIQTAKRLVF 139

Query: 74  DRVNKEKCDITE-----------------------DIFLSICRGYGRVHRPLDAMRVFDK 110
           +   K K D+++                       D++  +    G V   L+A ++F K
Sbjct: 140 EFCAKPKIDVSKSFHLFTEMLIYTYKDWGSHPLVFDLYFQVLVENGFV---LEAQKLFHK 196

Query: 111 MKEFGCEPTPKS---YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           +  +G   +  S   +++ L+   E   +K+A + +    E+G+     S N+++  LC+
Sbjct: 197 LLRYGVVVSVDSCNLFLSRLSCNFE--GIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQ 254

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G +  A  +  +M +RG  PD  +YG +++G CR+G++ +  +L  E++ K   P   
Sbjct: 255 -LGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEY 313

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            Y ++I  LC++  V EA +L   MR  GV P+   Y++++ G CK G  S A +L   M
Sbjct: 314 IYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEM 373

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
             K+  P+IVTY+++++G+CK GK+ EA E+ + M ++GL+PD   Y  +I  +C  G+ 
Sbjct: 374 RRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEM 433

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD 406
           +EA +  ++MV  G+TPN +T++        +  GLCK  + + A ++   M  + +  +
Sbjct: 434 KEAFSVHNQMVQKGLTPNVVTYT-------ALADGLCKNGEIDVANELLHEMSRKGLQPN 486

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
             TY++++   CK G+I ++ ++++E+ L G  PD  T++ +M A     +M +A ELL 
Sbjct: 487 VYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLR 546

Query: 467 LELMNK 472
           + ++NK
Sbjct: 547 I-MLNK 551



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 190/395 (48%), Gaps = 13/395 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G   DN  ++ +IS          A  L D + ++K  I  DI  + S+  G  +  + +
Sbjct: 342 GVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKK--IVPDIVTYTSVIHGICKSGKMV 399

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +F++M   G EP   +Y  ++    +  ++K AF  +  M + G+ P V +   L 
Sbjct: 400 EAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALA 459

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN G +D A ++  EM  +G  P+ YTY T++NGLC++G I +  +L +EM+    
Sbjct: 460 DGLCKN-GEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGF 518

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +TYT+L++  C+   + +A  L   M +K ++P + T++ LM+G C  G       
Sbjct: 519 YPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGER 578

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L++ M+ K   PN  T+++L+   C +  ++   EI   M  +G+ PD+  Y  +I   C
Sbjct: 579 LIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHC 638

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
                +EA     EMV  G       +S+    ++ +++G  K      A +++  MR  
Sbjct: 639 KARNMKEAWFLHKEMVEKG-------YSVTAATYDALIRGFYKRKKFVEARKLFEEMRKH 691

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            +  +   Y   +    ++G+   +  + DE + +
Sbjct: 692 GLVAEKDIYDIFVDVNYEEGNWEITLELCDEFMTE 726


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 215/418 (51%), Gaps = 12/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D   ++ M++    A Q   A  L+  +  E    T +  +    G GR     +A+ V 
Sbjct: 133 DVMVYNAMVAGYCGAGQLDAARRLVADMPVEPDAYTYNTLIRGLCGRGRTS---NALAVL 189

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M   GC P   +Y  +L    + +  K A +    M + G  P + + NV++  +C+ 
Sbjct: 190 EDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQE 249

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G ++ A +  + +P+ GC P++ +Y  ++ GL    +  +A++L +EM  K C P VVT
Sbjct: 250 -GRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVT 308

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  LI+ LC+   VE AM + E+M   G  PN  +Y+ L+   CK     +AME +++M+
Sbjct: 309 FNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMV 368

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+   P+IV+Y+TLL  LC+ G++  A+E+L ++K +G  P    Y  +I      GK +
Sbjct: 369 SRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTK 428

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           EA   LDEM   G+ P+ +T+S       T+  GLC+ D    A + +  +++  I   +
Sbjct: 429 EALELLDEMTSKGLQPDIITYS-------TIASGLCREDRIEEAVRTFCKVQDMGIRPTA 481

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             Y++++   CK+ + H +  +   ++  GC+P+E T++ ++  L     +++A EL 
Sbjct: 482 ALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELF 539



 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 192/348 (55%), Gaps = 11/348 (3%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRGYGR 97
           +  G   D  T+++++      + ++ A  LLD ++ + C    +T ++ L+ IC+  GR
Sbjct: 193 FRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQ-EGR 251

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           V    DAM     +  +GCEP   SY  VL  L    + + A +    M   G  P V +
Sbjct: 252 VE---DAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVT 308

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N+LI  LC+  G ++ A ++  +MP  GCTP+S +Y  L++  C+  KI++A E  + M
Sbjct: 309 FNMLISFLCRR-GLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELM 367

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
            ++ C P +V+Y +L+  LC++  V+ A+ L  +++ KG  P + +Y++++DGL K G +
Sbjct: 368 VSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKT 427

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A+ELL  M SK  +P+I+TYST+ +GLC+E +++EAV    +++  G++P A LY  I
Sbjct: 428 KEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAI 487

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           +   C   +   A +    M+  G  PN  T++  I +     +GL K
Sbjct: 488 LLGLCKRRETHNAIDLFAYMISSGCMPNESTYT--ILVEGLAYEGLVK 533



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 192/377 (50%), Gaps = 11/377 (2%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           LDA R    + +   EP   +Y T++  L    +   A      M   G  P V +  +L
Sbjct: 150 LDAARRL--VADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTIL 207

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           ++A CK SG    A K+  EM ++GC PD  TY  ++NG+C+ G++ +A E  K + +  
Sbjct: 208 LEATCKRSG-YKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYG 266

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P  V+Y  ++ GL  ++  E+A +L EEM  KG  PNV T++ L+  LC+ G    AM
Sbjct: 267 CEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAM 326

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           E+L+ M      PN ++Y+ LL+  CK+ K+ +A+E ++ M  +G  PD   Y  +++  
Sbjct: 327 EVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTAL 386

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRN 400
           C  G+   A   L ++   G +P  +++       NTV+ GL K    + A ++   M +
Sbjct: 387 CRNGEVDVAIELLHQLKDKGCSPVLISY-------NTVIDGLTKAGKTKEALELLDEMTS 439

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + +  D +TYS++ +  C++  I ++ R   ++   G  P    ++A++  L  RR+   
Sbjct: 440 KGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHN 499

Query: 461 AAELLLLELMNKCVEAE 477
           A +L    + + C+  E
Sbjct: 500 AIDLFAYMISSGCMPNE 516



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 190/365 (52%), Gaps = 17/365 (4%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ-PCVASLNVL 161
           DA+R+ D +   G  P   + +   A L++  +L  + R     R +    P V   N +
Sbjct: 85  DALRLVDSLA--GLNPPSPAAVGPCAALIK--KLCASGRTADARRVLAASGPDVMVYNAM 140

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +   C  +G +DAA ++  +MP     PD+YTY TLI GLC  G+   A  + ++M  + 
Sbjct: 141 VAGYC-GAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRG 196

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P VVTYT L+   C+    ++AM+L +EM  KG  P++ TY+ +++G+C+ G    AM
Sbjct: 197 CLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAM 256

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           E L+ + S    PN V+Y+ +L GL    + ++A ++++ M  +G  P+   +  +IS  
Sbjct: 257 EFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFL 316

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  G  + A   L++M   G TPN L++       N ++   CK    ++A +    M +
Sbjct: 317 CRRGLVEPAMEVLEQMPQYGCTPNSLSY-------NPLLHAFCKQKKIHKAMEFVELMVS 369

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R    D ++Y++L+T  C+ G++  +  ++ +L   GC P   +++ V+  L    K ++
Sbjct: 370 RGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKE 429

Query: 461 AAELL 465
           A ELL
Sbjct: 430 ALELL 434



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 176/348 (50%), Gaps = 31/348 (8%)

Query: 127 LAILVEENQLKLAFRFYRHMREI------GIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           L +LV   +L  A R    +  +       + PC A    LIK LC +  T DA     R
Sbjct: 74  LRVLVRRGELDDALRLVDSLAGLNPPSPAAVGPCAA----LIKKLCASGRTADAR----R 125

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
            +   G  PD   Y  ++ G C  G++  A+ L  +M  +   P   TY +LI GLC   
Sbjct: 126 VLAASG--PDVMVYNAMVAGYCGAGQLDAARRLVADMPVE---PDAYTYNTLIRGLCGRG 180

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
               A+ + E+M  +G  P+V TY+ L++  CK     QAM+LL  M  K   P+IVTY+
Sbjct: 181 RTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYN 240

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            +LNG+C+EG++++A+E L  +   G +P+   Y  ++       ++++A   ++EM   
Sbjct: 241 VVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHK 300

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCK---TDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
           G  PN +T+       N ++  LC+    +P  A +V   M     + +SL+Y+ L+  F
Sbjct: 301 GCPPNVVTF-------NMLISFLCRRGLVEP--AMEVLEQMPQYGCTPNSLSYNPLLHAF 351

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           CK+  IHK+   V+ +V  GC PD  +++ ++TAL    ++  A ELL
Sbjct: 352 CKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELL 399



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 158/309 (51%), Gaps = 22/309 (7%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTY----GTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           G +D A ++   +   G  P S         LI  LC  G+  +A+ +       A  P 
Sbjct: 81  GELDDALRLVDSL--AGLNPPSPAAVGPCAALIKKLCASGRTADARRVLA-----ASGPD 133

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           V+ Y +++ G C +  ++ A RL  +M    VEP+ +TY++L+ GLC  G +S A+ +L+
Sbjct: 134 VMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAVLE 190

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M  +   P++VTY+ LL   CK    ++A+++LD M  +G  PD   Y  +++  C  G
Sbjct: 191 DMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEG 250

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
           + ++A  FL  +   G  PN +++       N V++GL   +    A ++   M ++   
Sbjct: 251 RVEDAMEFLKNLPSYGCEPNTVSY-------NIVLKGLFTAERWEDAEKLMEEMAHKGCP 303

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            + +T++ LI+  C++G +  +  +++++   GC P+  +++ ++ A   ++K+ +A E 
Sbjct: 304 PNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEF 363

Query: 465 LLLELMNKC 473
           + L +   C
Sbjct: 364 VELMVSRGC 372


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/442 (30%), Positives = 231/442 (52%), Gaps = 18/442 (4%)

Query: 13  ITSAQ-VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           ++ AQ +LQ + + K  N A  +F S     A G    N  FS++++    +  F  A  
Sbjct: 119 LSEAQSLLQFVVSRKGKNSASSVFTSVLE--ARGTHQSNLVFSVLMNAYTDSGYFSDAIQ 176

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHR---PLDAMRVFDKMKEFGCEPTPKSYITVLA 128
               V K    I    F S    + R+ +      A   ++++ + G  P    +  ++ 
Sbjct: 177 CFRLVRKHNLQIP---FHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMH 233

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            L +E+++  A   +  + + G++P V S N LI   CK SG +D  F++ R M      
Sbjct: 234 RLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCK-SGNLDQGFRLKRFMMENRVF 292

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD +TY  LINGLC+ G++ +A +LF EM  +   P  VT+T+LING C +   +  M +
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           +++M  KGV+P+V TY++L++GLCK G   +A +L+  M  +  +P+  TY+ L++G CK
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EG L+ A+EI   M  +G++ D   +  +IS FC  G+  EA   L EM+  GI P+  T
Sbjct: 413 EGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDAT 472

Query: 369 WSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +++       V+ G CK  D    F++   M+        +TY+ L+   CK+G +  + 
Sbjct: 473 YTM-------VIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNAN 525

Query: 428 RIVDELVLDGCLPDEGTWSAVM 449
            ++D ++  G +PD+ T++ ++
Sbjct: 526 MLLDAMLNLGVVPDDITYNILL 547



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 152/348 (43%), Gaps = 9/348 (2%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           +P S ++    L  ++  +L+   Y  M   +     ++    L++ +    G   A+  
Sbjct: 82  SPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSV 141

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
               +  RG    +  +  L+N     G   +A + F+ +          +   L + L 
Sbjct: 142 FTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLM 201

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +      A   +EE+   G  P+V  ++ LM  LCK    ++A  L   +  +  RP +V
Sbjct: 202 KLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVV 261

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           +++TL+NG CK G L +   +   M    + PD   Y  +I+  C  G+  +A     EM
Sbjct: 262 SFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEM 321

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITC 416
              G+ PN +T++       T++ G C T   +   ++Y  M  + +  D +TY++LI  
Sbjct: 322 CDRGLVPNDVTFT-------TLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLING 374

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            CK GD+ ++ ++V E+   G  PD+ T++ ++        +  A E+
Sbjct: 375 LCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 131/314 (41%), Gaps = 61/314 (19%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYA------NGFR-----------HDNSTFS 54
           KI  AQ+L     ++ +   +V F++    Y        GFR            D  T+S
Sbjct: 240 KINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYS 299

Query: 55  LMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDI-FLSICRGYGRVHRPLDAMRVFDK 110
           ++I+ L    Q   A  L      E CD   +  D+ F ++  G+    R    M ++ +
Sbjct: 300 VLINGLCKEGQLDDANKLF----LEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQ 355

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M   G +P   +Y T++  L +   L+ A +    M + G++P   +  +LI   CK  G
Sbjct: 356 MLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK-EG 414

Query: 171 TMDAAFKI-----------------------------------FREMPNRGCTPDSYTYG 195
            +++A +I                                    REM   G  PD  TY 
Sbjct: 415 DLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYT 474

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            +I+G C+ G +    +L KEM+     P VVTY  L+NGLC+   ++ A  L + M + 
Sbjct: 475 MVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534

Query: 256 GVEPNVFTYSSLMD 269
           GV P+  TY+ L++
Sbjct: 535 GVVPDDITYNILLE 548



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 1/195 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ +I+ L      R A+ L+  + +      +  +  +  G  +      A
Sbjct: 360 GVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESA 419

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  +M + G E    ++  +++    E Q+  A R  R M E GI+P  A+  ++I  
Sbjct: 420 LEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHG 479

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +   FK+ +EM   G  P   TY  L+NGLC+ G++  A  L   M      P
Sbjct: 480 FCK-KGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVP 538

Query: 225 TVVTYTSLINGLCQS 239
             +TY  L+    Q+
Sbjct: 539 DDITYNILLERTLQA 553


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 225/450 (50%), Gaps = 30/450 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D   F+ +++ L    +   A +L+DR+ +     T     ++  G     +  DA
Sbjct: 153 GYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDA 212

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + D+M E G +P   +Y  VL ++ +  Q  LA    R M E  I+      +++I  
Sbjct: 213 VVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+ G++D AF +F EM  +G   D  TY TLI G C  G+  +  +L ++M  +  SP
Sbjct: 273 LCKD-GSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP 331

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVT++ LI+   +   + EA +L +EM  +G+ PN  TY+SL+DG CK     +A++++
Sbjct: 332 NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMV 391

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +MISK   P+I+T++ L+NG CK  ++ + +E+   M L+G+  +   Y  ++  FC  
Sbjct: 392 DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQS 451

Query: 345 GKYQEAANFLDEMVLGGITPNRLTW----------------------------SLHIRIH 376
           GK + A     EMV   + P+ +++                             L I I+
Sbjct: 452 GKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIY 511

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             ++ G+C     + A+ ++ S+  + + +D+  Y+ +I+  C+K  + K+  +  ++  
Sbjct: 512 MIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTE 571

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +G  PDE T++ ++ A         AAEL+
Sbjct: 572 EGHAPDELTYNILIRAHLGDDDATTAAELI 601



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 194/363 (53%), Gaps = 7/363 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M +    PT   +  + + + +  Q +L     + M   GI   + +L+++I
Sbjct: 71  DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  AF    ++   G  PD+  + TL+NGLC   ++ EA EL   M     
Sbjct: 131 NCFCR-CRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGH 189

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT++T  +L+NGLC +  V +A+ L + M   G +PN  TY  +++ +CK G ++ AME
Sbjct: 190 KPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAME 249

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M  +  + + V YS +++GLCK+G L  A  + + M+++G K D   Y  +I  FC
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFC 309

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           + G++ + A  L +M+   I+PN +T+S  + I + V +G  +     A Q+   M  R 
Sbjct: 310 NAGRWDDGAKLLRDMIKRKISPNVVTFS--VLIDSFVKEGKLR----EADQLLKEMMQRG 363

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I+ +++TY+SLI  FCK+  + ++ ++VD ++  GC PD  T++ ++       ++    
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGL 423

Query: 463 ELL 465
           EL 
Sbjct: 424 ELF 426



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 184/380 (48%), Gaps = 12/380 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRGYGRVHRPLDAMR 106
           D   +S++I  L        A +L + +  +  K DI    + ++  G+    R  D  +
Sbjct: 262 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIT--YNTLIGGFCNAGRWDDGAK 319

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +   M +    P   ++  ++   V+E +L+ A +  + M + GI P   + N LI   C
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFC 379

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +  ++ A ++   M ++GC PD  T+  LING C+  +I +  ELF+EM  +      
Sbjct: 380 KEN-RLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANT 438

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VTY +L+ G CQS  +E A +LF+EM S+ V P++ +Y  L+DGLC  G   +A+E+   
Sbjct: 439 VTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGK 498

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +   +   +I  Y  +++G+C   K+ +A ++   + L+G+K DA  Y  +IS  C    
Sbjct: 499 IEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDS 558

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVD 406
             +A     +M   G  P+ LT+++ IR H      L   D   A ++   M++     D
Sbjct: 559 LSKADILFRKMTEEGHAPDELTYNILIRAH------LGDDDATTAAELIEEMKSSGFPAD 612

Query: 407 SLTYSSLITCFCKKGDIHKS 426
             T   +I      G++ KS
Sbjct: 613 VSTVKMVINML-SSGELDKS 631



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 166/336 (49%), Gaps = 9/336 (2%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A   +R M +    P V   N L  A+ K +   +    + ++M ++G     YT   +I
Sbjct: 72  AVDLFRDMIQSRPLPTVIDFNRLFSAIAK-TKQYELVLALCKQMESKGIAHSIYTLSIMI 130

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           N  CR  K+  A     ++      P  V + +L+NGLC    V EA+ L + M   G +
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P + T ++L++GLC  G  S A+ L+  M+    +PN VTY  +LN +CK G+   A+E+
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL 250

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L +M+ + +K DA  Y  II   C  G    A N  +EM + G   + +T+       NT
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITY-------NT 303

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ G C     +   ++   M  R IS + +T+S LI  F K+G + ++ +++ E++  G
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRG 363

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             P+  T+++++       ++ +A +++ L +   C
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGC 399



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 152/294 (51%), Gaps = 8/294 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +FR+M      P    +  L + + +  +      L K+ME+K  + ++ T + +
Sbjct: 70  DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIM 129

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+ + +  A     ++   G EP+   +++L++GLC     S+A+EL+  M+   H
Sbjct: 130 INCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGH 189

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P ++T +TL+NGLC  GK+ +AV ++DRM   G +P+   YG +++  C  G+   A  
Sbjct: 190 KPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAME 249

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
            L +M    I  + + +S+       ++ GLCK    + AF ++  M  +    D +TY+
Sbjct: 250 LLRKMEERNIKLDAVKYSI-------IIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYN 302

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +LI  FC  G     A+++ +++     P+  T+S ++ +     K+R+A +LL
Sbjct: 303 TLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLL 356



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 113/275 (41%), Gaps = 34/275 (12%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T++ +I      N+   A  ++D +  + CD     F  +  GY + +R  D 
Sbjct: 363 GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDG 422

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M   G      +Y T++    +  +L++A + ++ M    ++P + S  +L+  
Sbjct: 423 LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482

Query: 165 LCKN----------------------------------SGTMDAAFKIFREMPNRGCTPD 190
           LC N                                  +  +D A+ +F  +P +G   D
Sbjct: 483 LCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLD 542

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           +  Y  +I+ LCR   + +A  LF++M  +  +P  +TY  LI           A  L E
Sbjct: 543 ARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIE 602

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           EM+S G   +V T   +++ L  G      +++L 
Sbjct: 603 EMKSSGFPADVSTVKMVINMLSSGELDKSFLDMLS 637


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/442 (30%), Positives = 231/442 (52%), Gaps = 18/442 (4%)

Query: 13  ITSAQ-VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           ++ AQ +LQ + + K  N A  +F S     A G    N  FS++++    +  F  A  
Sbjct: 119 LSEAQSLLQFVVSRKGKNSASSVFTSVLE--ARGTHQSNLVFSVLMNAYTDSGYFSDAIQ 176

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHR---PLDAMRVFDKMKEFGCEPTPKSYITVLA 128
               V K    I    F S    + R+ +      A   ++++ + G  P    +  ++ 
Sbjct: 177 CFRLVRKHNLQIP---FHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMH 233

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            L +E+++  A   +  + + G++P V S N LI   CK SG +D  F++ R M      
Sbjct: 234 RLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCK-SGNLDQGFRLKRFMMENRVF 292

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD +TY  LINGLC+ G++ +A +LF EM  +   P  VT+T+LING C +   +  M +
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           +++M  KGV+P+V TY++L++GLCK G   +A +L+  M  +  +P+  TY+ L++G CK
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EG L+ A+EI   M  +G++ D   +  +IS FC  G+  EA   L EM+  GI P+  T
Sbjct: 413 EGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDAT 472

Query: 369 WSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +++       V+ G CK  D    F++   M+        +TY+ L+   CK+G +  + 
Sbjct: 473 YTM-------VIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNAN 525

Query: 428 RIVDELVLDGCLPDEGTWSAVM 449
            ++D ++  G +PD+ T++ ++
Sbjct: 526 MLLDAMLNLGVVPDDITYNILL 547



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 189/384 (49%), Gaps = 16/384 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D   F++++ +L   ++   A+ L   + K     T   F ++  GY +       
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+   M E    P   +Y  ++  L +E QL  A + +  M + G+ P   +   LI  
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLING 339

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C  +G  D   +I+++M  +G  PD  TY TLINGLC++G + EAK+L  EM  +   P
Sbjct: 340 HCV-TGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKP 398

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TYT LI+G C+   +E A+ + +EM  +G+E +   +++L+ G C+ G   +A   L
Sbjct: 399 DKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTL 458

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+    +P+  TY+ +++G CK+G ++   ++L  M+  G  P    Y  +++  C  
Sbjct: 459 REMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQ 518

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
           G+ + A   LD M+  G+ P+ +T+       N +++G CK      F    S   + + 
Sbjct: 519 GQMKNANMLLDAMLNLGVVPDDITY-------NILLEGHCKHGNREDFDKLQS--EKGLV 569

Query: 405 VDSLTYSSLITCFCKKGDIHKSAR 428
            D  +Y+SLI      GD+ K+ +
Sbjct: 570 QDYGSYTSLI------GDLRKTCK 587



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 152/348 (43%), Gaps = 9/348 (2%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           +P S ++    L  ++  +L+   Y  M   +     ++    L++ +    G   A+  
Sbjct: 82  SPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSV 141

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
               +  RG    +  +  L+N     G   +A + F+ +          +   L + L 
Sbjct: 142 FTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLM 201

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +      A   +EE+   G  P+V  ++ LM  LCK    ++A  L   +  +  RP +V
Sbjct: 202 KLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVV 261

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           +++TL+NG CK G L +   +   M    + PD   Y  +I+  C  G+  +A     EM
Sbjct: 262 SFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEM 321

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITC 416
              G+ PN +T++       T++ G C T   +   ++Y  M  + +  D +TY++LI  
Sbjct: 322 CDRGLVPNDVTFT-------TLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLING 374

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            CK GD+ ++ ++V E+   G  PD+ T++ ++        +  A E+
Sbjct: 375 LCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422


>gi|357505557|ref|XP_003623067.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498082|gb|AES79285.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/483 (28%), Positives = 251/483 (51%), Gaps = 31/483 (6%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W  ++    +  LI  + D + +L IF  A   +   F H+  T+  +  KL     F  
Sbjct: 43  WPHRLNPKLLSSLISRQHDPHFSLQIFLHAQNHHKPPFSHNPQTYQAIFLKLSKFRCFSE 102

Query: 69  AEDLLD--RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
            E LL   R +   C   E+  +++ RGYG   +P+ A++ F +++ FG  P+ +S   +
Sbjct: 103 IESLLAGLRSSPPHC-CGEEPIVTVIRGYGLAGKPVRALKTFLRIESFGIRPSVRSINAL 161

Query: 127 LAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           L  LV+  + +LAF  +++  E   + P V S N+L+KALCK +  ++ A K+  EMP  
Sbjct: 162 LNSLVQNKRYRLAFLVFKNCGERFRVLPNVVSCNILLKALCKGN-EVEVAVKVLDEMPGM 220

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P+  +Y T++ G    G +  A ++F+E+  +  SP V +YT L++G C+   + +A
Sbjct: 221 GLVPNVVSYTTVLGGFVWRGDMDGAMKVFREVLDRGWSPDVTSYTVLVDGFCRLGKLVDA 280

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL--- 302
           +R+ + M   GVEPN  TY  ++   CK   S +A+ L++ MI+K    ++V  S L   
Sbjct: 281 IRVMDIMEDNGVEPNEVTYGVMIQAYCKEKKSGEAVNLIEDMIAK----DLVVGSELCCK 336

Query: 303 -LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI-----ISCFCDIGKYQEAANFLDE 356
            ++ LC+EG +++A E+   +     + + GL G +     I   C  GK  EA N  DE
Sbjct: 337 VVDLLCEEGNVEKACEMWRMVS----RKNCGLNGAVVVSTLIHWLCKKGKVLEARNVFDE 392

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
              G +          +  +NT++ GLC+  +   A +++  M  + ++ ++ TY+ LI 
Sbjct: 393 FGKGSVA--------SLLTYNTLIAGLCEGGELCEAARLWDDMVEKGVAPNAFTYNMLIK 444

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
            FCK G+  +  R+++E++ + CLP++ T++ ++  +     M+Q    ++   M+  V+
Sbjct: 445 GFCKVGNAKEGIRVLEEMLENRCLPNKSTYTILIDGILLLGGMKQEINKVVSLAMSTGVD 504

Query: 476 AEV 478
           A++
Sbjct: 505 ADL 507


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 194/398 (48%), Gaps = 42/398 (10%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F++M      P+   +  +L  + +  Q    F     M   GI P V +LN+LI
Sbjct: 50  DALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILI 109

Query: 163 KALCKNS----------------------------------GTMDAAFKIFREMPNRGCT 188
            + C  +                                  G +  A  +F +M   G  
Sbjct: 110 NSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQ 169

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  TYGTLINGLC++G    A  L + ME   C P VV YTS+I+ LC+ + V EA  L
Sbjct: 170 PNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNL 229

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F +M  +G+ P++FTY+SL+  LC          LL  MI+ +  P++V +ST+++ LCK
Sbjct: 230 FSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK 289

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EGK+ EA +++D M ++G++P+   Y  ++   C   +  EA    D MV  G  PN ++
Sbjct: 290 EGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVIS 349

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       NT++ G CK    ++A  ++  M  + +  +++TY++L+   C  G +  + 
Sbjct: 350 Y-------NTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAI 402

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  E+V  G +PD  T+  ++  L  +  + +A  LL
Sbjct: 403 ALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALL 440



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 217/435 (49%), Gaps = 10/435 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ +I  L    +   A  L D++  E        + ++  G  +V     A
Sbjct: 132 GLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 191

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M++  C+P    Y +++  L ++ Q+  AF  +  M   GI P + +   LI +
Sbjct: 192 IRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHS 251

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N         +  +M N    PD   + T+++ LC+ GKI EA ++   M  +   P
Sbjct: 252 LC-NLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEP 310

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +L++G C    ++EA+++F+ M   G  PNV +Y++L++G CK     +A  L 
Sbjct: 311 NVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLF 370

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   PN VTY+TL++GLC  G+LQ+A+ +   M   G  PD   Y  ++   C  
Sbjct: 371 EEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKK 430

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
               EA   L  +    + P+       I+I+  V+ G+C+  +   A  ++ ++ ++ +
Sbjct: 431 SHLDEAMALLKTIEGSNMDPD-------IQIYTIVIDGMCRAGELEAARDIFSNLSSKGL 483

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TY+ +I   C++G + ++ ++  E+  +GC PD  T++ +   L   ++  +A +
Sbjct: 484 RPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQ 543

Query: 464 LLLLELMNKCVEAEV 478
            LL E++ +   A+V
Sbjct: 544 -LLQEMLARGFSADV 557



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/468 (27%), Positives = 208/468 (44%), Gaps = 50/468 (10%)

Query: 6   MFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           + K   +  +A    LIR    E  +  AL +FD    E   GF+ +  T+  +I+ L  
Sbjct: 128 ILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGE---GFQPNVVTYGTLINGLCK 184

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
                 A  LL  + +  C     ++ SI     +  +  +A  +F KM   G  P   +
Sbjct: 185 VGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFT 244

Query: 123 YI-----------------------------------TVLAILVEENQLKLAFRFYRHMR 147
           Y                                    TV+  L +E ++  A      M 
Sbjct: 245 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMI 304

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G++P V + N L+   C  S  MD A K+F  M + G  P+  +Y TLING C++ ++
Sbjct: 305 IRGVEPNVVTYNALMDGHCLQS-EMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRM 363

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  LF+EM  K   P  VTY +L++GLC    +++A+ LF EM + G  P++ TY  L
Sbjct: 364 DKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRIL 423

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +D LCK     +AM LL+ +      P+I  Y+ +++G+C+ G+L+ A +I   +  +GL
Sbjct: 424 LDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGL 483

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT- 386
           +P+   Y  +I+  C  G   EA     EM   G +P+  T+       NT+ QGL +  
Sbjct: 484 RPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTY-------NTITQGLLQNK 536

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +  RA Q+   M  R  S D  T + L+   C         +I+ E V
Sbjct: 537 EALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQILSEFV 584



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 152/325 (46%), Gaps = 16/325 (4%)

Query: 150 GIQPCVASLNVLIKALCKNS--------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
           G   CV SL     +L  N          T+D A   F  M +    P +  +  L+  +
Sbjct: 18  GFGTCVLSLPPYFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSI 77

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
            +  +      L  +M++    P V T   LIN  C       A  +  ++   G++P+ 
Sbjct: 78  AKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDT 137

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            T+++L+ GLC  G    A+ L   MI +  +PN+VTY TL+NGLCK G    A+ +L  
Sbjct: 138 ATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRS 197

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M+    +PD  +Y  II   C   +  EA N   +MV  GI+P+  T++       +++ 
Sbjct: 198 MEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYT-------SLIH 250

Query: 382 GLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            LC     +     L+ M N  I  D + +S+++   CK+G I ++  +VD +++ G  P
Sbjct: 251 SLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEP 310

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
           +  T++A+M     + +M +A ++ 
Sbjct: 311 NVVTYNALMDGHCLQSEMDEAVKVF 335


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 216/420 (51%), Gaps = 9/420 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T  ++I+      +      +L ++ K    +T   F ++  G  +V +   A
Sbjct: 152 GLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQA 211

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +FD M   G +P   +Y T++  L +  +   A   +R M E G QP V + + +I +
Sbjct: 212 VELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDS 271

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+   ++ A  IF  M  +G +P+ +TY +LI GLC   +  EA  +  EM +    P
Sbjct: 272 LCKDR-RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMP 330

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VT++ LIN  C+  +V EA  + + M   GVEPNV TYSSLM+G        +A +L 
Sbjct: 331 NIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLF 390

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +MI+K  +P++ +Y+ L+NG CK  ++ EA ++ + M  QGL PD   Y  +I   C +
Sbjct: 391 DVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQL 450

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+ +EA +    M+  G  P+  T+S+       ++ G CK     +AF+++ +M++  +
Sbjct: 451 GRLREAHDLFKNMLTNGNLPDLCTYSI-------LLDGFCKQGYLAKAFRLFRAMQSTYL 503

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             + + Y+ LI   CK  ++ ++ ++  EL + G  P+   ++ ++  L     + +A E
Sbjct: 504 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALE 563



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/411 (30%), Positives = 209/411 (50%), Gaps = 19/411 (4%)

Query: 63  ANQFRPAEDLLDRVNK------EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-G 115
           A+ FR  +D L   N         C I  +  LS        H   DA+    K  E  G
Sbjct: 96  ASSFRNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYH---DAVISLSKQMELAG 152

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
             P   +   ++    +  ++ L F     + ++G+Q  + + N LI  LCK  G    A
Sbjct: 153 LSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCK-VGKFGQA 211

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            ++F +M  RG  PD +TY T+INGLC++G+   A  LF++M    C P VVTY+++I+ 
Sbjct: 212 VELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDS 271

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           LC+ + V EA+ +F  M++KG+ PN+FTY+SL+ GLC      +A  +L  M+S    PN
Sbjct: 272 LCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPN 331

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           IVT+S L+N  CKEG + EA  +L  M   G++P+   Y  +++ +    +  EA    D
Sbjct: 332 IVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFD 391

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLI 414
            M+  G  P+  ++       N ++ G CK      A Q++  M ++ ++ D ++Y++LI
Sbjct: 392 VMITKGCKPDVFSY-------NILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLI 444

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              C+ G + ++  +   ++ +G LPD  T+S ++     +  + +A  L 
Sbjct: 445 DGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLF 495



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 213/415 (51%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I+ L    +F  A +L D +           + +I  G  ++   + A  +F KM
Sbjct: 194 TFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKM 253

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E GC+P   +Y T++  L ++ ++  A   + +M+  GI P + + N LI+ LC  S  
Sbjct: 254 GEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRW 313

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            +A+  +  EM +    P+  T+  LIN  C+ G ++EA+ + K M      P VVTY+S
Sbjct: 314 REAS-AMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSS 372

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+NG      V EA +LF+ M +KG +P+VF+Y+ L++G CK     +A +L   MI + 
Sbjct: 373 LMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG 432

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+IV+Y+TL++GLC+ G+L+EA ++   M   G  PD   Y  ++  FC  G   +A 
Sbjct: 433 LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAF 492

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
                M    + PN + +       N ++  +CK+ +   A +++  +  + +  +   Y
Sbjct: 493 RLFRAMQSTYLKPNMVMY-------NILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIY 545

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I   CK+G + ++      +  DGC P+E +++ ++      +   +A +L+
Sbjct: 546 TTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLI 600



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 195/415 (46%), Gaps = 45/415 (10%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +A+ +FD   A    G++ D  T++ +I+ L    +   A  L  ++ +  C      + 
Sbjct: 210 QAVELFDDMVAR---GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYS 266

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           +I     +  R  +A+ +F  MK  G  P   +Y +++  L   ++ + A      M  +
Sbjct: 267 TIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL 326

Query: 150 GIQPCVASLNVLIKALCKNSGTMDA----------------------------------A 175
            I P + + ++LI   CK     +A                                  A
Sbjct: 327 NIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEA 386

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            K+F  M  +GC PD ++Y  LING C+  +I EAK+LF EM  +  +P +V+Y +LI+G
Sbjct: 387 RKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDG 446

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           LCQ   + EA  LF+ M + G  P++ TYS L+DG CK G  ++A  L + M S   +PN
Sbjct: 447 LCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPN 506

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +V Y+ L++ +CK   L+EA ++   + +QGL+P+  +Y  II+  C  G   EA     
Sbjct: 507 MVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFR 566

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLT 409
            M   G  PN  ++       N +++G  +  D +RA Q+   MR +    D  T
Sbjct: 567 NMEEDGCPPNEFSY-------NVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 156/305 (51%), Gaps = 9/305 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK-ELFKEMETKACSPTVVTY 229
            +D A   F  M +R   P    +  L++ + ++   ++A   L K+ME    SP   T 
Sbjct: 101 NIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTL 160

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             LIN   Q + V+    +  ++   G++  + T+++L++GLCK G   QA+EL   M++
Sbjct: 161 HMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVA 220

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           + ++P++ TY+T++NGLCK G+   A  +  +M   G +PD   Y  II   C   +  E
Sbjct: 221 RGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 280

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSL 408
           A +    M   GI+PN  T+       N+++QGLC     R     L+ M + +I  + +
Sbjct: 281 ALDIFSYMKAKGISPNIFTY-------NSLIQGLCNFSRWREASAMLNEMMSLNIMPNIV 333

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           T+S LI  FCK+G++ ++  ++  +   G  P+  T+S++M     + ++ +A +L  + 
Sbjct: 334 TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVM 393

Query: 469 LMNKC 473
           +   C
Sbjct: 394 ITKGC 398


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 234/468 (50%), Gaps = 35/468 (7%)

Query: 16  AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR 75
           +++L+++   K VNKAL +F        N      + ++ +I  L+         +L + 
Sbjct: 163 SEILKILGKAKMVNKALSVFYQIKGRKCNP---TATVYNTLILMLMHEGHHEKIHELYNE 219

Query: 76  VNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           +  E  C      + ++   +G++ R   A R+FD+MKE G  PT K Y T+LA+  + N
Sbjct: 220 ICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLN 279

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           +++ A R    M+  G  P V +   LIK L K  G +D A+ +F  M   GC PD    
Sbjct: 280 KVEAALRLVEEMKGKGCAPTVFTYTELIKGLGK-VGRVDDAYSLFFNMLKDGCKPDVVLI 338

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRLFEEMR 253
             LIN L R G++ +A +LF +M++  C+P VVTY ++I  + +SK+   EA   FE+M+
Sbjct: 339 NNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMK 398

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           + G+ P+ FTY+ L+DG CK     +A+ LL+ M  K   P    Y +L++ L +  + +
Sbjct: 399 ANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYE 458

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL-- 371
            A E+   +K    +  A +Y  +I  F + G+  +A +   E    G +P+  T++   
Sbjct: 459 AANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALM 518

Query: 372 --------------------------HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404
                                      I+ HN ++ GL KT  P RA +++  M+   I 
Sbjct: 519 SGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIM 578

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            D+++Y+++++C  + G    +A+++ E+ L G   D  T+S+++ A+
Sbjct: 579 PDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAV 626



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 126/532 (23%), Positives = 223/532 (41%), Gaps = 103/532 (19%)

Query: 6   MFKWSTKITSA-QVLQLIRAEKDVNKALVIFDSATAEYA--------NGFRHDNSTFSLM 56
           +FKW +    A +VL+L    + V++ L I     A+            F+HD++T+  +
Sbjct: 71  IFKWGSDAEKAIEVLKLKVDHRLVHQVLDIDVEIRAKIQFFKWAGKRQHFQHDSTTYMAL 130

Query: 57  I-----SKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           I     S LV    +R  +D++    +  C +    +  I +  G+      A+ VF ++
Sbjct: 131 IRCLEESGLVD-EMWRTIQDMI----RSPCSVGPAEWSEILKILGKAKMVNKALSVFYQI 185

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K   C PT   Y T++ +L+ E                                    G 
Sbjct: 186 KGRKCNPTATVYNTLILMLMHE------------------------------------GH 209

Query: 172 MDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +   +++ E+ + G C+PD+ TY  LI+   +L +   A  LF EM+     PT   YT
Sbjct: 210 HEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYT 269

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +++    +   VE A+RL EEM+ KG  P VFTY+ L+ GL K G    A  L   M+  
Sbjct: 270 TILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKD 329

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII-SCFCDIGKYQE 349
             +P++V  + L+N L + G+L++A+++  +M      P+   Y  +I + F       E
Sbjct: 330 GCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASE 389

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS---- 404
           AA + ++M   GI P+  T+++       ++ G CKT+   +A  +   M  +       
Sbjct: 390 AALWFEKMKANGIAPSSFTYAI-------LIDGFCKTNRVEKALLLLEEMDEKGFPPCPA 442

Query: 405 -----VDSL--------------------------TYSSLITCFCKKGDIHKSARIVDEL 433
                +DSL                           Y+ +I  F   G +  +  +  E 
Sbjct: 443 AYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEX 502

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQDV 485
              GC PD  T++A+M+ +     + +A  L+     N C     DI++ ++
Sbjct: 503 EKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTP---DIKSHNI 551



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 153/307 (49%), Gaps = 5/307 (1%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL- 102
           +G + D    + +I+ L  A +   A  L  +++  +C      + ++ +       P  
Sbjct: 329 DGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPAS 388

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A   F+KMK  G  P+  +Y  ++    + N+++ A      M E G  PC A+   LI
Sbjct: 389 EAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 448

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            +L + +   +AA ++F+E+        +  Y  +I      G++ +A +LF E E   C
Sbjct: 449 DSLGR-AKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGC 507

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP V TY +L++G+ ++  ++EA  L   MR  G  P++ +++ +++GL K G   +A+E
Sbjct: 508 SPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIE 567

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   M      P+ V+Y+T+L+ L + G  + A +++  MKL+G + D+  Y  I+    
Sbjct: 568 MFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEA-- 625

Query: 343 DIGKYQE 349
            +GK  E
Sbjct: 626 -VGKVDE 631


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 194/387 (50%), Gaps = 9/387 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T +L++  L  + +   A D  +      C I    + +I     +  +  DA+ + +K+
Sbjct: 132 THNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKI 191

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC PT  +Y  +L  L +  +L+ A    R + + G  P V +   LI  L K   +
Sbjct: 192 TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRS 251

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            + A+K+F+EM  RG   D+  Y  LI GL + GKI +A  ++K M ++ C P VVT ++
Sbjct: 252 FE-AYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 310

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+GLC++  +  A+R+F+ M ++G+ PN   YS+L+ GLCK      A+E+L  M    
Sbjct: 311 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 370

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+ +TY+ L++GLCK G ++ A    D M   G KPD   Y  ++S FC  G    A 
Sbjct: 371 CTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAAC 430

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
              D+M     +PN +T+        T++ GLCK     +A   +  M+ R    DS  Y
Sbjct: 431 GVFDDMSSSHCSPNVVTY-------GTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVY 483

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDG 437
           SSL+   CK G +     + DE+   G
Sbjct: 484 SSLVDGLCKSGKLEGGCMLFDEMERSG 510



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 231/455 (50%), Gaps = 15/455 (3%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           +I++  V+++ +  KD + A  +F   ++    GF+H   T + ++       + R A +
Sbjct: 22  EISTDAVVKIFQCLKDADLAWELFQCLSSPRF-GFQHSVHTGNALLDVFARTKRHREAGN 80

Query: 72  LLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLA 128
           LL   N+       D+  +  +  GY     P +A  V  +M+E +G  P+ K++  VL 
Sbjct: 81  LLK--NELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLH 138

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            L +  ++  A   +      G    + +   ++  L KN    DA   +  ++   GCT
Sbjct: 139 GLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAV-ALMEKITANGCT 197

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P   TY  L+NGLC++G++ EA +L +++    C+P VVTYTSLI+GL + K   EA +L
Sbjct: 198 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 257

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F+EM  +G+  +   Y++L+ GL + G   QA  + + M S+   P++VT ST+++GLCK
Sbjct: 258 FKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 317

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G++  AV I   M+ +GL P+  +Y  +I   C   K   A   L +M     TP+ +T
Sbjct: 318 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTIT 377

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       N ++ GLCK+    A + +   M       D  TY+ L++ FCK G+   + 
Sbjct: 378 Y-------NILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAAC 430

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
            + D++    C P+  T+  +++ L  RR++ +A+
Sbjct: 431 GVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKAS 465



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 192/376 (51%), Gaps = 9/376 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G  +  + L AM  F+     GC     +Y  ++  L +  +++ A      +   G
Sbjct: 136 VLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANG 195

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
             P +A+ N L+  LCK  G ++ A  + R++ + GCTPD  TY +LI+GL +  + +EA
Sbjct: 196 CTPTIATYNALLNGLCK-MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 254

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            +LFKEM  +      V YT+LI GL Q+  + +A  +++ M S+G  P+V T S+++DG
Sbjct: 255 YKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDG 314

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LCK G    A+ + + M ++   PN V YS L++GLCK  K+  A+E+L +MK     PD
Sbjct: 315 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 374

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
              Y  +I   C  G  + A  F DEM+  G  P+  T+       N +V G CK  + +
Sbjct: 375 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY-------NILVSGFCKAGNTD 427

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  V+  M +   S + +TY +LI+  CK+  + K++     +   GC PD   +S+++
Sbjct: 428 AACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLV 487

Query: 450 TALWDRRKMRQAAELL 465
             L    K+     L 
Sbjct: 488 DGLCKSGKLEGGCMLF 503



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 203/416 (48%), Gaps = 14/416 (3%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   ++  +   K +  A+ + +  TA   NG     +T++ +++ L    +   A DLL
Sbjct: 167 TYTAIVDWLAKNKKIQDAVALMEKITA---NGCTPTIATYNALLNGLCKMGRLEEAIDLL 223

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
            ++    C      + S+  G G+  R  +A ++F +M   G       Y  ++  L++ 
Sbjct: 224 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQA 283

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
            ++  A   Y+ M   G  P V +L+ +I  LCK +G + AA +IF+ M  RG  P+   
Sbjct: 284 GKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK-AGRIGAAVRIFKSMEARGLAPNEVV 342

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y  LI+GLC+  K+  A E+  +M+   C+P  +TY  LI+GLC+S  VE A   F+EM 
Sbjct: 343 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEML 402

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             G +P+V+TY+ L+ G CK G +  A  +   M S    PN+VTY TL++GLCK  +L 
Sbjct: 403 EAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLT 462

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +A      MK +G  PD+ +Y  ++   C  GK +      DEM   G+  ++    L  
Sbjct: 463 KASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRL-- 520

Query: 374 RIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                 +  LCK +  + A  ++ ++R   +      Y+S+I+   K   ++   R
Sbjct: 521 ------IFHLCKANRVDEAVSLFNAIRKEGMP-HPYAYNSIISTLIKSAKVNPCTR 569



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 155/319 (48%), Gaps = 10/319 (3%)

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G Q  V + N L+    +     +A   +  E+      PD  T+  LI G C   +  
Sbjct: 53  FGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATT-FLPDVETWNVLITGYCLAREPE 111

Query: 209 EAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           EA  + +EME     +P++ T+  +++GLC+S  V  AM  FE   + G   ++ TY+++
Sbjct: 112 EAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAI 171

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +D L K      A+ L++ + +    P I TY+ LLNGLCK G+L+EA+++L ++   G 
Sbjct: 172 VDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 231

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            PD   Y  +I       +  EA     EM L G+  + + ++  IR       GL +  
Sbjct: 232 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIR-------GLLQAG 284

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
              +A  VY +M ++    D +T S++I   CK G I  + RI   +   G  P+E  +S
Sbjct: 285 KIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYS 344

Query: 447 AVMTALWDRRKMRQAAELL 465
           A++  L   RKM  A E+L
Sbjct: 345 ALIHGLCKARKMDCALEML 363



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 122/306 (39%), Gaps = 46/306 (15%)

Query: 173 DAAFKIFR--EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           D A+++F+    P  G     +T   L++   R  +  EA  L K        P V T+ 
Sbjct: 39  DLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWN 98

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            LI G C ++  EEA  +  EM    GV P+                             
Sbjct: 99  VLITGYCLAREPEEAFAVIREMEEDYGVAPS----------------------------- 129

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
                 + T++ +L+GLCK GK+  A++  +     G   D   Y  I+       K Q+
Sbjct: 130 ------LKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQD 183

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A   ++++   G TP        I  +N ++ GLCK      A  +   + +   + D +
Sbjct: 184 AVALMEKITANGCTPT-------IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVV 236

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY+SLI    K+    ++ ++  E+ L G + D   ++A++  L    K+ QA+ +    
Sbjct: 237 TYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTM 296

Query: 469 LMNKCV 474
               CV
Sbjct: 297 TSQGCV 302


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 209/419 (49%), Gaps = 41/419 (9%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+ +I     +  R  DA  +F +M+E G  P   +Y +++       +   A +  + M
Sbjct: 257 IYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM 316

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E  I P V + N LI A  K     +AA +++ EM  RG  P++ TY ++I+G C+  +
Sbjct: 317 LERKISPDVVTYNALINAFVKEGKFFEAA-ELYDEMLPRGIIPNTITYNSMIDGFCKQDR 375

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A+++F  M TK CSP V T+T+LI+G C +K +++ M L  EM  +G+  N  TY++
Sbjct: 376 LDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNT 435

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK--- 323
           L+ G C  G  + A++L Q MIS    P+IVT +TLL+GLC  GKL++A+E+   M+   
Sbjct: 436 LIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 495

Query: 324 --------LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR- 374
                     G++PD   Y  +I    + GK+ EA    +EM   GI P+ +T+S  I  
Sbjct: 496 MDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 375 ---------------------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVD 406
                                        NT++ G CK    +   +++  M  R I  D
Sbjct: 556 LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVAD 615

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ Y +LI  F K G+I+ +  I  E++  G  PD  T   ++T  W + ++ +A  +L
Sbjct: 616 AIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAML 674



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 222/435 (51%), Gaps = 21/435 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ ++  L   ++   A D   ++ +  C      F ++  G  R  R ++A
Sbjct: 144 GLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEA 203

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +PT  +Y T++  + ++     A    R M E+  I P V   + +I 
Sbjct: 204 VALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK+    DA   +F EM  +G  PD +TY ++I G C  G+  +A++L +EM  +  S
Sbjct: 264 SLCKDGRHSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS 322

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY +LIN   +     EA  L++EM  +G+ PN  TY+S++DG CK      A ++
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 382

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M +K   P++ T++TL++G C   ++ + +E+L  M  +GL  +   Y  +I  FC 
Sbjct: 383 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 442

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
           +G    A +   +M+  G+ P+ +T        NT++ GLC     + A +++ +M+   
Sbjct: 443 VGDLNAALDLSQQMISSGVCPDIVTC-------NTLLDGLCDNGKLKDALEMFKAMQKSK 495

Query: 403 ISVDS-----------LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           + +D+           LTY+ LI     +G   ++  + +E+   G +PD  T+S+++  
Sbjct: 496 MDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 452 LWDRRKMRQAAELLL 466
           L  + ++ +A ++ +
Sbjct: 556 LCKQSRLDEATQMFV 570



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D    ++++M  +    D Y++  LI   C   K+  A   F ++      P VVT+T+L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL 155

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           ++GLC    V EA+  F +M      PNV T+++LM+GLC+ G   +A+ LL  M+    
Sbjct: 156 LHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-LQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           +P  +TY T+++G+CK+G    A+ +L +M+ +  + P+  +Y  II   C  G++ +A 
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           N   EM   GI P+  T+       N+++ G C +   + A Q+   M  R IS D +TY
Sbjct: 276 NLFTEMQEKGIFPDLFTY-------NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           ++LI  F K+G   ++A + DE++  G +P+  T+++++     + ++  A ++  L   
Sbjct: 329 NALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMAT 388

Query: 471 NKC 473
             C
Sbjct: 389 KGC 391



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 12/331 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I+  V   +F  A +L D +           + S+  G+ +  R   A  +F
Sbjct: 324 DVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMF 383

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M   GC P   ++ T++       ++         M   G+     + N LI   C  
Sbjct: 384 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL- 442

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET--------- 219
            G ++AA  + ++M + G  PD  T  TL++GLC  GK+ +A E+FK M+          
Sbjct: 443 VGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASH 502

Query: 220 --KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P V+TY  LI GL       EA  L+EEM  +G+ P+  TYSS++DGLCK    
Sbjct: 503 PFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A ++   M SK   PN+VT++TL+NG CK G++ + +E+   M  +G+  DA +Y  +
Sbjct: 563 DEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITL 622

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           I  F  +G    A +   EM+  G+ P+ +T
Sbjct: 623 IYGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 150/295 (50%), Gaps = 9/295 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L+  + R+ +      L+++ME K     + ++  
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI   C    +  A+  F ++   G+ P+V T+++L+ GLC     S+A++    M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RPN+VT++TL+NGLC+EG++ EAV +LDRM   GL+P    YG I+   C  G    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSISVDSLT 409
           N L +M  +  I PN       + I++ ++  LCK   +   Q ++  M+ + I  D  T
Sbjct: 240 NLLRKMEEVSHIIPN-------VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+S+I  FC  G    + +++ E++     PD  T++A++ A     K  +AAEL
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAEL 347



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 150/324 (46%), Gaps = 12/324 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T++ MI      ++   AED+   +  + C      F ++  GY    R  D 
Sbjct: 355 GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDG 414

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M +  +M   G      +Y T++        L  A    + M   G+ P + + N L+  
Sbjct: 415 MELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 474

Query: 165 LCKNSGTMDAAFKIFREM-----------PNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
           LC N G +  A ++F+ M           P  G  PD  TY  LI GL   GK  EA+EL
Sbjct: 475 LCDN-GKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEEL 533

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           ++EM  +   P  +TY+S+I+GLC+   ++EA ++F  M SK   PNV T+++L++G CK
Sbjct: 534 YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCK 593

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G     +EL   M  +    + + Y TL+ G  K G +  A++I   M   G+ PD   
Sbjct: 594 AGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTIT 653

Query: 334 YGKIISCFCDIGKYQEAANFLDEM 357
              +++ F    + + A   L+++
Sbjct: 654 IRNMLTGFWSKEELERAVAMLEDL 677



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 150/291 (51%), Gaps = 12/291 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ +I     A +     +LL  + +         + ++  G+  V     A
Sbjct: 390 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAA 449

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GIQP 153
           + +  +M   G  P   +  T+L  L +  +LK A   ++ M++            G++P
Sbjct: 450 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 509

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V + N+LI  L  N G    A +++ EMP+RG  PD+ TY ++I+GLC+  ++ EA ++
Sbjct: 510 DVLTYNILICGLI-NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQM 568

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F  M +K+ SP VVT+ +LING C++  V++ + LF EM  +G+  +   Y +L+ G  K
Sbjct: 569 FVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRK 628

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            G  + A+++ Q MIS    P+ +T   +L G   + +L+ AV +L+ +++
Sbjct: 629 VGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQM 679



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 36/210 (17%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++++I  L++  +F  AE+L                               
Sbjct: 505 NGVEPDVLTYNILICGLINEGKFLEAEEL------------------------------- 533

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               +++M   G  P   +Y +++  L ++++L  A + +  M      P V + N LI 
Sbjct: 534 ----YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLIN 589

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK +G +D   ++F EM  RG   D+  Y TLI G  ++G I  A ++F+EM +    
Sbjct: 590 GYCK-AGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVY 648

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           P  +T  +++ G    + +E A+ + E+++
Sbjct: 649 PDTITIRNMLTGFWSKEELERAVAMLEDLQ 678


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 228/453 (50%), Gaps = 37/453 (8%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLD-AMRVF 108
           TF+ +I+ L    + R AE +L ++ +   D++ D+F   S+  G+ R +R LD A  VF
Sbjct: 242 TFNTLINILSKKGKVREAELILSQIFQY--DLSPDVFTYTSLILGHCR-NRNLDLAFGVF 298

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M + GC+P   +Y T++  L  E ++  A      M E GI+P V +  + I ALC  
Sbjct: 299 DRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAI 358

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
               +A   + R M  RGC P+  TY  LI+GL RLGK+  A  L+ +M  +   P  VT
Sbjct: 359 EHEEEAIELVAR-MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 417

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LIN LC       A+++F  M   G   N  TY+ ++ GLC GG   +AM L + M+
Sbjct: 418 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 477

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                P +VTY+TL+NG   +G +  A  +LD MK  G +PD   Y +++S F   GK +
Sbjct: 478 KMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLE 537

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIH----------------------------NTVV 380
            A+ +  EMV  G+ PN ++++  I  H                            N V+
Sbjct: 538 SASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVI 597

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GL K +  + A ++   M  + +  + +TY++LI   C+ G    + +I  ++    CL
Sbjct: 598 NGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL 657

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           P+  T+S+++  L    K  + AE+LL E+  K
Sbjct: 658 PNLYTYSSLIYGLCQEGKADE-AEILLKEMERK 689



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 218/464 (46%), Gaps = 36/464 (7%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+ KA+V+F+        G      T++ +I+  ++      A  LLD + +  C+  E 
Sbjct: 465 DIEKAMVLFEKMLKM---GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEW 521

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  +  G+ +  +   A   F +M E G  P P SY T++    ++ ++ +A      M
Sbjct: 522 TYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERM 581

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E+G  P V S N +I  L K +   +A  KI  +M  +G  P+  TY TLI+GLCR G+
Sbjct: 582 EEMGCNPNVESYNAVINGLSKENRFSEAE-KICDKMAEQGLLPNVITYTTLIDGLCRNGR 640

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
              A ++F +ME + C P + TY+SLI GLCQ    +EA  L +EM  KG+ P+  T++S
Sbjct: 641 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTS 700

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL--------QEAV-- 316
           L+DG    G    A  LL+ M+    +PN  TYS LL GL KE  L         EAV  
Sbjct: 701 LIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYS 760

Query: 317 --------------EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
                          +L RM   G +P    Y  ++S  C  G++ EA   + +M   G 
Sbjct: 761 FSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGF 820

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P+R        I+ +++   CK  + + A +++ S+  +   +    Y +LI   CK G
Sbjct: 821 CPDR-------EIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAG 873

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + ++  + D ++      DE  W+ ++  L    ++    +LL
Sbjct: 874 QVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLL 917



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 130/462 (28%), Positives = 225/462 (48%), Gaps = 26/462 (5%)

Query: 2   GVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV 61
           G   + + S ++ +  V +++   KD    +  F   +      ++H+ + F  M+++LV
Sbjct: 104 GSSELKQLSPQLKAHHVAEIVAVHKDTESVIQFFYWISKR--PFYKHNMNCFISMLNRLV 161

Query: 62  SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
               F PA+ +  R+          + +  CR    + R  D +     M   G   +  
Sbjct: 162 RDRVFAPADHI--RI----------LMIKACRNEEEIRRVADFLNEISGM---GFGFSLY 206

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           S  T+L  L +   ++ A   Y+ M   GIQP + + N LI  L K     +A   I  +
Sbjct: 207 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAEL-ILSQ 265

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           +     +PD +TY +LI G CR   +  A  +F  M  + C P  VTY++LINGLC    
Sbjct: 266 IFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGR 325

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V+EA+ + EEM  KG+EP V+TY+  +  LC      +A+EL+  M  +  RPN+ TY+ 
Sbjct: 326 VDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 385

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L++GL + GKL+ A+ +  +M  +GL P+   Y  +I+  C  G++  A      M   G
Sbjct: 386 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 445

Query: 362 ITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
              N  T+       N +++GLC   D  +A  ++  M         +TY++LI  +  K
Sbjct: 446 SLANTQTY-------NEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTK 498

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           G+++ +AR++D +  +GC PDE T++ +++      K+  A+
Sbjct: 499 GNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESAS 540



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 220/463 (47%), Gaps = 47/463 (10%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           ++++ A  +FD    E   G   ++ T+S +I+ L +  +   A D+L+ + ++  + T 
Sbjct: 289 RNLDLAFGVFDRMVKE---GCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTV 345

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             +         +    +A+ +  +MK+ GC P  ++Y  +++ L    +L++A   Y  
Sbjct: 346 YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHK 405

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M + G+ P   + N LI  LC   G    A KIF  M   G   ++ TY  +I GLC  G
Sbjct: 406 MLKEGLVPNTVTYNALINELCV-GGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGG 464

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            I +A  LF++M      PTVVTY +LING     +V  A RL + M+  G EP+ +TY+
Sbjct: 465 DIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYN 524

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            L+ G  K G    A    Q M+     PN V+Y+TL++G  K+GK+  A+ +L+RM+  
Sbjct: 525 ELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEM 584

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G  P+   Y  +I+      ++ EA    D+M   G+ PN +T++       T++ GLC+
Sbjct: 585 GCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYT-------TLIDGLCR 637

Query: 386 TDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL----------- 433
               + AF+++  M  R    +  TYSSLI   C++G   ++  ++ E+           
Sbjct: 638 NGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVT 697

Query: 434 ---VLDG---------------------CLPDEGTWSAVMTAL 452
              ++DG                     C P+  T+S ++  L
Sbjct: 698 FTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGL 740



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 213/428 (49%), Gaps = 25/428 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRP 101
           G   +  T++ +I++L    +F  A  +   +           +  I +G    G + + 
Sbjct: 410 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEK- 468

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             AM +F+KM + G  PT  +Y T++   + +  +  A R    M+E G +P   + N L
Sbjct: 469 --AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 526

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +    K  G +++A   F+EM   G  P+  +Y TLI+G  + GK+  A  L + ME   
Sbjct: 527 VSGFSK-WGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMG 585

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C+P V +Y ++INGL +     EA ++ ++M  +G+ PNV TY++L+DGLC+ G +  A 
Sbjct: 586 CNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAF 645

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   M  ++  PN+ TYS+L+ GLC+EGK  EA  +L  M+ +GL PD   +  +I  F
Sbjct: 646 KIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGF 705

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--------------IHNTVVQGLCKTD 387
             +G+   A   L  MV  G  PN  T+S+ ++              + +  V      +
Sbjct: 706 VVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHE 765

Query: 388 PNRAFQVYLSMRNRSISVDSL----TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
            +  F++  ++  R   +       TYS+L++  C+KG  +++ ++V ++   G  PD  
Sbjct: 766 KDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDRE 825

Query: 444 TWSAVMTA 451
            + +++ A
Sbjct: 826 IYYSLLIA 833



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 183/434 (42%), Gaps = 70/434 (16%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T   ++     + +VN A  + D       NG   D  T++ ++S      +   A 
Sbjct: 484 TVVTYNTLINGYLTKGNVNNAARLLDLMKE---NGCEPDEWTYNELVSGFSKWGKLESAS 540

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
                + +   +     + ++  G+ +  +   A+ + ++M+E GC P  +SY  V+  L
Sbjct: 541 FYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGL 600

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
            +EN+   A +    M E G+ P V +   LI  LC+N G    AFKIF +M  R C P+
Sbjct: 601 SKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRN-GRTQFAFKIFHDMEKRKCLPN 659

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKA----------------------------- 221
            YTY +LI GLC+ GK  EA+ L KEME K                              
Sbjct: 660 LYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLR 719

Query: 222 ------CSPTVVTYTSLINGL------------CQSKSV------------EEAMRLFEE 251
                 C P   TY+ L+ GL             Q ++V            E    L   
Sbjct: 720 RMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLAR 779

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M   G EP + TYS+L+ GLC+ G   +A +L++ M  +   P+   Y +LL   CK  +
Sbjct: 780 MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLE 839

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A++I   ++ +G +    +Y  +I   C  G+ +EA    D M+      + + W++
Sbjct: 840 VDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTV 899

Query: 372 HIRIHNTVVQGLCK 385
                  +V GL K
Sbjct: 900 -------LVDGLLK 906



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 155/329 (47%), Gaps = 23/329 (6%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I  L    + + A  +   + K KC      + S+  G  +  +  +A  +  +M
Sbjct: 627 TYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEM 686

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---- 167
           +  G  P   ++ +++   V   ++  AF   R M ++G +P   + +VL+K L K    
Sbjct: 687 ERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLL 746

Query: 168 ---------------NSGTMDAAFKIFREMPNR----GCTPDSYTYGTLINGLCRLGKIY 208
                          +    D  F+I   +  R    GC P   TY TL++GLCR G+ Y
Sbjct: 747 LEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFY 806

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           EA++L K+M+ +   P    Y SL+   C++  V+ A+++F  + +KG + ++  Y +L+
Sbjct: 807 EAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALI 866

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
             LCK G   +A  L   M+ K    + + ++ L++GL KEG+L   +++L  M+ +   
Sbjct: 867 CALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFT 926

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           P+   Y  +      IGK  E+    D++
Sbjct: 927 PNIQTYVILGRELSRIGKSIESEPLADKL 955



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 140/297 (47%), Gaps = 25/297 (8%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S +I  L    +   AE LL  + ++     E  F S+  G+  + R   A  +  +M
Sbjct: 662 TYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 721

Query: 112 KEFGCEPTPKSYITVLA------ILVEEN---QLKLAFRFYRH---------------MR 147
            + GC+P  ++Y  +L       +L+EE    Q +  + F  H               M 
Sbjct: 722 VDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMS 781

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           EIG +P + + + L+  LC+  G    A ++ ++M  RG  PD   Y +L+   C+  ++
Sbjct: 782 EIGCEPTLDTYSTLVSGLCR-KGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEV 840

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A ++F  +E K     +  Y +LI  LC++  VEEA  LF+ M  K    +   ++ L
Sbjct: 841 DHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVL 900

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +DGL K G     M+LL +M SK   PNI TY  L   L + GK  E+  + D++K+
Sbjct: 901 VDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLKV 957



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 149/342 (43%), Gaps = 25/342 (7%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +++ +I+ L   N+F  AE + D++ ++        + ++  G  R  R   A ++F  M
Sbjct: 592 SYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 651

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           ++  C P   +Y +++  L +E +   A    + M   G+ P   +   LI       G 
Sbjct: 652 EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVV-LGR 710

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK-------------------- 211
           +D AF + R M + GC P+  TY  L+ GL +   + E K                    
Sbjct: 711 IDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNF 770

Query: 212 ----ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
                L   M    C PT+ TY++L++GLC+     EA +L ++M+ +G  P+   Y SL
Sbjct: 771 EIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSL 830

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +   CK      A+++   + +K  + ++  Y  L+  LCK G+++EA  + D M  +  
Sbjct: 831 LIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEW 890

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
             D  ++  ++      G+       L  M     TPN  T+
Sbjct: 891 NADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTY 932


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 220/425 (51%), Gaps = 12/425 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDL-LDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           GF  D   F+ M+  L +  +   A D+ L R+ +  C      +  + +G    +R  +
Sbjct: 121 GFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQE 180

Query: 104 AMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           A+ +   M + G  C P   SY TV+    +E  L  A+  Y  M + GI P V + + +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I ALCK +  MD A ++   M   G  P+  TY ++++G C  G+  EA    K+M +  
Sbjct: 241 IAALCK-AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVTY SL++ LC++    EA ++F+ M  +G++P + TY +L+ G    G   +  
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL +M+     PN   +S L+    K+GK+ +A+ +  +M+ QGL PD   YG +I   
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  G+ ++A  + ++M+   ++P  +       ++N+++  LC  D  ++A ++ L M +
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNI-------VYNSLIHSLCIFDKWDKAKELILEMLD 472

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I +D++ ++S+I   CK+G + +S ++ D +V  G  PD  T+S ++       KM +
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 461 AAELL 465
           A +LL
Sbjct: 533 ATKLL 537



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 189/333 (56%), Gaps = 10/333 (3%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGL 201
           R M ++G  P V S N+L+K LC ++ + +A  ++ + MP+ G  C PD  +Y T+ING 
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDDNRSQEA-LELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
            + G + +A   + EM  +   P VVTY+S+I  LC+++++++AM +   M   GV PN 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY+S++ G C  G   +A+  L+ M S    P++VTY++L++ LCK G+  EA ++ D 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  +GLKP+   YG ++  +   G   E    LD MV  GI PN   +S+ I  +    Q
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY--AKQ 387

Query: 382 GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           G  K D  +A  V+  MR + ++ D++TY ++I   CK G +  + R  ++++ +   P 
Sbjct: 388 G--KVD--QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
              +++++ +L    K  +A E L+LE++++ +
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKE-LILEMLDRGI 475



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 226/454 (49%), Gaps = 12/454 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++  +   + ++KA+ +    T+   NG   +  T++ ++    S+ Q + A   
Sbjct: 235 VTYSSIIAALCKAQAMDKAMEVL---TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L +++ +  +     + S+     +  R  +A ++FD M + G +P   +Y T+L     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L         M   GI P     ++LI A  K  G +D A  +F +M  +G  PD+ 
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ-GKVDQAMLVFSKMRQQGLNPDTV 410

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYGT+I  LC+ G++ +A   F++M  +  SP  + Y SLI+ LC     ++A  L  EM
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+  +   ++S++D  CK G   ++ +L  +M+    +P+I+TYSTL++G C  GK+
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L  M   G+KPD   Y  +I+ +C I + ++A     EM   G++P+ +T+   
Sbjct: 531 DEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY--- 587

Query: 373 IRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               N ++QGL +T    A  ++Y+ +      ++  TY+ ++   CK     ++ R+  
Sbjct: 588 ----NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQ 643

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            L L     +  T++ ++ AL    +  +A +L 
Sbjct: 644 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLF 677



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 191/428 (44%), Gaps = 43/428 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           +FDS T     G + + +T+  ++    +         LLD + +        +F  +  
Sbjct: 326 MFDSMTKR---GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +   AM VF KM++ G  P   +Y TV+ IL +  +++ A R++  M +  + P
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 154 CVASLNVLIKALC----------------KNSGTMDAAF------------------KIF 179
                N LI +LC                     +D  F                  K+F
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  PD  TY TLI+G C  GK+ EA +L   M +    P  VTY +LING C+ 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +E+A+ LF EM S GV P++ TY+ ++ GL +   ++ A EL   +     +  + TY
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     EA+ +   + L  L+ +   +  +I     +G+  EA +    +  
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G+ P+  T+SL     N + QGL +        ++LSM     + +S   +S++    +
Sbjct: 683 NGLVPDVRTYSL--MAENLIEQGLLEE----LDDLFLSMEENGCTANSRMLNSIVRKLLQ 736

Query: 420 KGDIHKSA 427
           +GDI ++ 
Sbjct: 737 RGDITRAG 744



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 140/305 (45%), Gaps = 14/305 (4%)

Query: 174 AAFKIFREMPNRGC---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           AA   +  M   G    TP+  TYG L+   C  G++         +  K      + +T
Sbjct: 71  AAVSRYNRMARAGADEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFT 130

Query: 231 SLINGLCQSKSVEEAMRL-FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            ++ GLC  K   +AM +    M   G  PNVF+Y+ L+ GLC    S +A+ELLQMM  
Sbjct: 131 PMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPD 190

Query: 290 KRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                 P++V+Y+T++NG  KEG L +A      M  +G+ P+   Y  II+  C     
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD 406
            +A   L  MV  G+ PN        R +N++V G C +  P  A      M +  +  D
Sbjct: 251 DKAMEVLTSMVKNGVMPN-------CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY+SL+   CK G   ++ ++ D +   G  P+  T+  ++     +  + +   LL 
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 467 LELMN 471
           L + N
Sbjct: 364 LMVRN 368



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 163/343 (47%), Gaps = 6/343 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V  A+  F+    E        N  ++ +I  L   +++  A++L
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDER---LSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C +    F SI   + +  R +++ ++FD M   G +P   +Y T++    
Sbjct: 467 ILEMLDRGIC-LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              ++  A +    M  +G++P   + N LI   CK S  M+ A  +FREM + G +PD 
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKIS-RMEDALVLFREMESSGVSPDI 584

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  ++ GL +  +   AKEL+  +        + TY  +++GLC++   +EA+R+F+ 
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQN 644

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +    ++    T++ ++  L K G + +A +L   + +    P++ TYS +   L ++G 
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGL 704

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           L+E  ++   M+  G   ++ +   I+      G    A  +L
Sbjct: 705 LEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+S +I     A +   A  LL  +           + ++  GY ++ R  DA
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+  G  P   +Y  +L  L +  +   A   Y  + E G Q  +++ N+++  
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN+ T D A ++F+ +       ++ T+  +I  L ++G+  EAK+LF  +      P
Sbjct: 629 LCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY+ +   L +   +EE   LF  M   G   N    +S++  L + G  ++A   L
Sbjct: 688 DVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 747

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             MI ++H     + ++L   L   GK QE
Sbjct: 748 -FMIDEKHFSLEASTASLFLDLLSGGKYQE 776



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 107/261 (40%), Gaps = 44/261 (16%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F E+  +    ++      +  + +  S   A+  +  M   G   V PN+ TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            LM   C  G        L  +I K    + + ++ +L GLC + +  +A++I L RM  
Sbjct: 96  ILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G  P+   Y  ++   CD  + QEA   L  M   G                    G C
Sbjct: 156 LGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDG--------------------GDC 195

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             D                    ++Y+++I  F K+GD+ K+     E++  G LP+  T
Sbjct: 196 PPD-------------------VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVT 236

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S+++ AL   + M +A E+L
Sbjct: 237 YSSIIAALCKAQAMDKAMEVL 257


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 212/414 (51%), Gaps = 9/414 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           + ++++++   L    +   A  LL ++    C      + ++  GY +V      +++ 
Sbjct: 252 NTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLI 311

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M+  G +P P +Y  V+ +L +  ++  A R  R M   GI P       LI   CK 
Sbjct: 312 EEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCK- 370

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G + +A+++F EM  R  +PD  TY  +I GLC+ G++ EA +LF EM  K   P  VT
Sbjct: 371 LGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT 430

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT+LI+G C+   ++EA  L  +M   G+ PN+ TY++L DGLCK G    A ELL  M 
Sbjct: 431 YTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMC 490

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K    NI TY++L+NGLCK G + +AV+++  M++ G  PDA  Y  ++  +C   +  
Sbjct: 491 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMV 550

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDS 407
            A   L +M+   + P  +T+       N ++ G C +      +  L  M  + I  ++
Sbjct: 551 RAHELLRQMLDRELQPTVVTF-------NVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNA 603

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            TY+SLI  +C + ++  +  I   +   G +PD  T++ ++      R M++A
Sbjct: 604 TTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEA 657



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 203/383 (53%), Gaps = 31/383 (8%)

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K++G +P  + +     +LVE   L  A + +  M   G+   V S N+ I  L ++   
Sbjct: 176 KDWGSDP--RVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDG 233

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A K+F E P  G   ++ +Y  + + LC+LG++ EA +L  +ME + C P V++Y++
Sbjct: 234 IKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYST 293

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +ING CQ   ++  ++L EEM+ KG++PN +TY+ ++  LCK G  ++A  +L+ MIS+ 
Sbjct: 294 VINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG 353

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+ V Y+TL++G CK G +  A  + D M+ + + PD   Y  +I   C  G+  EA 
Sbjct: 354 IAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEAD 413

Query: 352 NFLDEMVLGGITPNRLTWSLHI-------------RIHNTVVQ---------------GL 383
               EMV   + P+ +T++  I              +HN ++Q               GL
Sbjct: 414 KLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGL 473

Query: 384 CK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK  + + A ++   M  + + ++  TY+SL+   CK G+I ++ +++ ++ + G  PD 
Sbjct: 474 CKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDA 533

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T++ +M A    R+M +A ELL
Sbjct: 534 VTYTTLMDAYCKSREMVRAHELL 556



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 217/439 (49%), Gaps = 10/439 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ +I  L    +   AE +L  +  E       I+ ++  G+ ++     A
Sbjct: 318 GLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSA 377

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+FD+M++    P   +Y  V+  L +  ++  A + +  M    ++P   +   LI  
Sbjct: 378 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 437

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M  AF +  +M   G TP+  TY  L +GLC+ G++  A EL  EM  K    
Sbjct: 438 YCK-EGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLEL 496

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            + TY SL+NGLC++ ++++A++L ++M   G  P+  TY++LMD  CK     +A ELL
Sbjct: 497 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 556

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+ +  +P +VT++ L+NG C  G L++  ++L  M  +G+ P+A  Y  +I  +C  
Sbjct: 557 RQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIR 616

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
              +        M   G+ P+  T+       N +++G CK  +   A+ ++  M  +  
Sbjct: 617 NNMRATTEIYRGMCAKGVVPDGNTY-------NILIKGHCKARNMKEAWFLHRDMVGKGF 669

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           ++   +Y++LI  F K+    ++  + +++  +G + D   ++      +D  KM    E
Sbjct: 670 NLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLE 729

Query: 464 LLLLELMNKCVEAEVDIQN 482
            L  E + KC+  ++  +N
Sbjct: 730 -LCDEAIEKCLVGDIQTKN 747


>gi|255660938|gb|ACU25638.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 481

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 227/469 (48%), Gaps = 40/469 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K    AL  F     Z +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKKSEHALQFF--RWVZRSNLFEHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+     ED+++ +   YG+     +++++F KM+E G E T KSY  +  +++   +  
Sbjct: 73  KKGLQWDEDLWVLMIDSYGKAGIVQESVKLFHKMEELGVERTIKSYDVLFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + N++I      SG ++ A + F +M +R  TPD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNIMIWGFFL-SGKVETAXRFFEDMKSRDITPDVITYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ EA++ F EM+ +   PTVVT+T+LI G      V++A+RL EEM+  G+
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDRVDDALRLVEEMKGFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+ + GLC     S+A   L+ M+ K   P +   +  L++G CK G L  A 
Sbjct: 252 KPNAITYSTXLPGLCNAEKMSEARSXLKEMVDKYIAPTDNSIFLRLISGQCKAGNLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIRI 375
           ++L  M    +  +AG YG +I  +C   +Y +A + LD+++   I    + T  +    
Sbjct: 312 DVLKAMIRLSVPTEAGHYGVLIENYCKAVQYDKAISLLDKLIEKDIILRPQSTSHMEPSA 371

Query: 376 HNTVVQGLCKT-----------------------------------DPNRAFQVYLSMRN 400
           +N +++ LC                                      P+ AF++   M  
Sbjct: 372 YNPLIEYLCNNGQTAKAETLVRQLMKLGVQDATALNTLIRGHSQEGSPDSAFELLKIMLR 431

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           R    +   Y+SL+ C+ KK +   +   +D ++ +G LPD   +  VM
Sbjct: 432 RKXDSEKSAYNSLVQCYLKKSEPADAKTALDSMIENGHLPDSSLFRLVM 480



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 116/248 (46%), Gaps = 9/248 (3%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  +I  L ++  +  A  +  +M  KG++ +   +  ++D   K G   ++++L   M
Sbjct: 47  THLKIIEILGRASKLNHARCILLDMPKKGLQWDEDLWVLMIDSYGKAGIVQESVKLFHKM 106

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                   I +Y  L   + + G+   A    ++M  +G++P    +  +I  F   GK 
Sbjct: 107 EELGVERTIKSYDVLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKV 166

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A  F ++M    ITP+ +T+       NT++ G  +      A + ++ M+ R+I   
Sbjct: 167 ETAXRFFEDMKSRDITPDVITY-------NTMINGYYRVKKMEEAEKYFVEMKGRNIEPT 219

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +T+++LI  +     +  + R+V+E+   G  P+  T+S  +  L +  KM +A    L
Sbjct: 220 VVTHTTLIKGYVAVDRVDDALRLVEEMKGFGIKPNAITYSTXLPGLCNAEKMSEARS-XL 278

Query: 467 LELMNKCV 474
            E+++K +
Sbjct: 279 KEMVDKYI 286


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 231/471 (49%), Gaps = 62/471 (13%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D +T S++I  L    +   A +LL+ + +  C +    + ++ +G    HR  +A
Sbjct: 186 GIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEA 245

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE------IGIQPCVASL 158
            R+F  M++ GC P   +Y T++  L +   +  A + ++ M        I  +P + S 
Sbjct: 246 TRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISY 305

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING------------------ 200
           +++I  LCK+    D A ++F+EM  +G  PD  +Y TLI+G                  
Sbjct: 306 SIIIDGLCKDRRE-DEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEML 364

Query: 201 -----------------LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
                            LC+ GK+ EA +L + +  + C P VVT T+L+ GLC    + 
Sbjct: 365 DVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRIS 424

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH------RPNIV 297
           +A +LF +M+  G  PNV T ++LM GLC+ G    A+EL + M+S         +PN +
Sbjct: 425 KATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAI 484

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           +YS +++GLCK G+  EA E+   MK  G+ PD   Y  +I  FC  GK+++A    +EM
Sbjct: 485 SYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEM 544

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSL 413
           V  G+ P+  T+S+ I +       LCK     + N   +V   M  R    +++TY++L
Sbjct: 545 VDIGVQPDVTTFSVLIDM-------LCKEGKVIEANELLEV---MIQRGCIPNTVTYTTL 594

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +   C    I ++ ++  ++   GCLPD  T+  +M  L     ++ A EL
Sbjct: 595 VKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALEL 645



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 229/471 (48%), Gaps = 62/471 (13%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +T  ++I       +   A +LL+ + +  C +    + ++ +G    HR  +A
Sbjct: 5   GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEA 64

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM----REIGI--QPCVASL 158
            ++F  MK+ GC P   +Y T++  L +  ++ +A   ++ M     + GI  +P + S 
Sbjct: 65  TQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSY 124

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL-------------- 204
           +++I  LCK+    D A ++F+EM  +G  PD  +Y +LI+G CR               
Sbjct: 125 SIIIDGLCKDRRE-DEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEML 183

Query: 205 ---------------------GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
                                GK+ EA EL + M  + C   +VTY++LI GLC    + 
Sbjct: 184 DVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRIS 243

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR------PNIV 297
           EA RLF  M+  G  P+   Y +LM GLC+ G  + A++L Q M++   R      P ++
Sbjct: 244 EATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLI 303

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           +YS +++GLCK+ +  EA E+   MK QG+ PD   Y  +I  FC  GK+++A    +EM
Sbjct: 304 SYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEM 363

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSL 413
           +  GI P+  T S+ I +       LCK     + N+  +V +    R    D +T ++L
Sbjct: 364 LDVGIQPDVTTSSVLIDM-------LCKKGKVIEANKLLEVVI---QRGCIPDVVTCTTL 413

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +   C K  I K+ ++  ++   GC+P+  T + +M  L     ++ A EL
Sbjct: 414 VKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALEL 464



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 200/395 (50%), Gaps = 21/395 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +T S++I  L    +   A  LL+ V +  C        ++ +G    HR   A
Sbjct: 367 GIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKA 426

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE------IGIQPCVASL 158
            ++F KM++ GC P   +  T++  L +   +K+A   +++M        I  +P   S 
Sbjct: 427 TQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISY 486

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           +++I  LCK  G  D A ++F+EM   G  PD  +Y +LI+G CR GK  +AK LF EM 
Sbjct: 487 SIIIDGLCK-CGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMV 545

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P V T++ LI+ LC+   V EA  L E M  +G  PN  TY++L+ GLC     S
Sbjct: 546 DIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRIS 605

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ------GLKPDAG 332
           +A +L   M      P++VTY TL+ GLC+ G ++ A+E+  +M           KPD  
Sbjct: 606 EATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVI 665

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            Y  II   C  G+  EA     EM   G+ PN ++++       +++ G C++     A
Sbjct: 666 SYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYT-------SLIHGFCRSGKLEDA 718

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
             ++  M ++ + ++++TYS +I  FCK+G I K+
Sbjct: 719 KHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 753



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 228/435 (52%), Gaps = 27/435 (6%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR---VNKEKCDITEDIFLSICRGYGRVH 99
           A G   D  +++ +I     + ++  A+ L +    V  +    T  + + +    G+V 
Sbjct: 330 AQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKV- 388

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
             ++A ++ + + + GC P   +  T++  L  ++++  A + +  M+++G  P V +  
Sbjct: 389 --IEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCA 446

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNR------GCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            L+K LC+ SG +  A ++ + M +        C P++ +Y  +I+GLC+ G+  EA+EL
Sbjct: 447 TLMKGLCQ-SGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEAREL 505

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           FKEM+     P V++YTSLI+G C+S   ++A  LF EM   GV+P+V T+S L+D LCK
Sbjct: 506 FKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCK 565

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A ELL++MI +   PN VTY+TL+ GLC   ++ EA ++  +M+  G  PD   
Sbjct: 566 EGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVT 625

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLG------GITPNRLTWSLHIRIHNTVVQGLCKTD 387
           YG ++   C  G  + A     +M+           P+ +++S+       ++ GLCK  
Sbjct: 626 YGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSI-------IIDGLCKHG 678

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A +++  M+   +  + ++Y+SLI  FC+ G +  +  + +E+V  G   +  T+S
Sbjct: 679 REDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYS 738

Query: 447 AVMTALWDRRKMRQA 461
            ++       ++ +A
Sbjct: 739 VMIHGFCKEGQIDKA 753



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 210/388 (54%), Gaps = 21/388 (5%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           + ++A  + + M + GC     +Y T++  L  ++++  A + +  M+++G +P   +  
Sbjct: 25  KVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYG 84

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRG------CTPDSYTYGTLINGLCRLGKIYEAKEL 213
            L+K LC+ +G ++ A  + +EM N        C P   +Y  +I+GLC+  +  EA+EL
Sbjct: 85  TLMKGLCQ-TGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEAREL 143

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           FKEM+ +   P V++YTSLI+G C+S   E+A  LF EM   G+  +V T S L+D LCK
Sbjct: 144 FKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCK 203

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A ELL++MI +    +IVTYSTL+ GLC + ++ EA  +   M+  G +PDA  
Sbjct: 204 EGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIA 263

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLG----GI--TPNRLTWSLHIRIHNTVVQGLCKT- 386
           YG ++   C  G    A     EM+      GI   P  +++S+       ++ GLCK  
Sbjct: 264 YGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSI-------IIDGLCKDR 316

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A +++  M+ + I  D ++Y++LI  FC  G   K+  + +E++  G  PD  T S
Sbjct: 317 REDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSS 376

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCV 474
            ++  L  + K+ +A +LL + +   C+
Sbjct: 377 VLIDMLCKKGKVIEANKLLEVVIQRGCI 404



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 234/452 (51%), Gaps = 27/452 (5%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR---VNKEKCDITEDIFLSICRGYGRVH 99
           A G   D  +++ +I     + ++  A+ L +    V       T  + + I    G+V 
Sbjct: 149 AQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKV- 207

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
             ++A  + + M + GC     +Y T++  L  ++++  A R +  M+++G +P   +  
Sbjct: 208 --IEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYG 265

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRG------CTPDSYTYGTLINGLCRLGKIYEAKEL 213
            L+K LC+ +G ++ A ++ +EM N        C P   +Y  +I+GLC+  +  EA+EL
Sbjct: 266 TLMKGLCQ-TGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEAREL 324

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           FKEM+ +   P V++YT+LI+G C S   E+A  LF EM   G++P+V T S L+D LCK
Sbjct: 325 FKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCK 384

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A +LL+++I +   P++VT +TL+ GLC + ++ +A ++  +M+  G  P+   
Sbjct: 385 KGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVT 444

Query: 334 YGKIISCFCDIGKYQEA----ANFLDEMVLGGIT--PNRLTWSLHIRIHNTVVQGLCKTD 387
              ++   C  G  + A     N L +    GI   PN +++S+       ++ GLCK  
Sbjct: 445 CATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSI-------IIDGLCKCG 497

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A +++  M+   +  D ++Y+SLI  FC+ G    +  + +E+V  G  PD  T+S
Sbjct: 498 REDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFS 557

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            ++  L    K+ +A ELL + +   C+   V
Sbjct: 558 VLIDMLCKEGKVIEANELLEVMIQRGCIPNTV 589



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 177/333 (53%), Gaps = 21/333 (6%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M  +GIQP V +  VLI   CK    ++A  ++   M  RGC  D  TY TLI GLC   
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEAN-ELLEVMVQRGCILDIVTYSTLIKGLCMKH 59

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK----GV--EP 259
           +I EA +LF  M+   C P  + Y +L+ GLCQ+  +  A+ L +EM +     G+  +P
Sbjct: 60  RISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKP 119

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
            + +YS ++DGLCK     +A EL + M ++   P++++Y++L++G C+ GK ++A  + 
Sbjct: 120 TLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLF 179

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           + M   G++ D      +I   C  GK  EA   L+ M+  G   + +T+S       T+
Sbjct: 180 NEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYS-------TL 232

Query: 380 VQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG- 437
           ++GLC K   + A ++++SM+      D++ Y +L+   C+ G+I+ + ++  E++ D  
Sbjct: 233 IKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTG 292

Query: 438 -----CLPDEGTWSAVMTALWDRRKMRQAAELL 465
                C P   ++S ++  L   R+  +A EL 
Sbjct: 293 RYGIKCKPTLISYSIIIDGLCKDRREDEARELF 325



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 154/288 (53%), Gaps = 11/288 (3%)

Query: 37  SATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRG 94
           S T+ Y    + +  ++S++I  L    +   A +L   +  +   +  D+  + S+  G
Sbjct: 470 SDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEM--KALGVIPDVISYTSLIHG 527

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           + R  +  DA  +F++M + G +P   ++  ++ +L +E ++  A      M + G  P 
Sbjct: 528 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPN 587

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             +   L+K LC N   +  A ++F +M   GC PD  TYGTL+ GLC+ G I  A EL 
Sbjct: 588 TVTYTTLVKGLCMND-RISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELH 646

Query: 215 KEMETKACS------PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           K+M +          P V++Y+ +I+GLC+    +EA  LF+EM++ GV PNV +Y+SL+
Sbjct: 647 KKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLI 706

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
            G C+ G    A  L   M+ +  + N VTYS +++G CKEG++ +A+
Sbjct: 707 HGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 754


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 210/420 (50%), Gaps = 10/420 (2%)

Query: 56  MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG 115
           ++S  V   + + A DL        C      + ++  G+ +      A R+ D+M++ G
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
             P    Y T++  L +  ++  A   YR M+     P V +  +L+ ALCK++   DA+
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR-HCAPSVITYTILVDALCKSARISDAS 122

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             I  +M   GC P+  TY TLING C+LG + EA  LF +M   +CSP V TY  LI+G
Sbjct: 123 L-ILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDG 181

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C+ +  ++  +L +EM   G EPN  TY++LMD L K G    A  L QMM+ +  +P+
Sbjct: 182 YCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPS 241

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
             T++ +++  CK G+L  A E+   M  +G  PD   Y  +IS  C   +  +A   L+
Sbjct: 242 HFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLE 301

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
            M   G  P+ +T+       N++V GLCK +  + A++VY  +RN    +D +T S+LI
Sbjct: 302 RMTEAGCPPDVVTY-------NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLI 354

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
              CK   +  + +++ E+  +G  PD   ++ ++       ++ ++       L   CV
Sbjct: 355 DGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCV 414



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 167/313 (53%), Gaps = 5/313 (1%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVFD 109
           T++ +I+          A  L +++ +  C  + D+F    +  GY +  RP D  ++  
Sbjct: 139 TYNTLINGFCKLGNMDEAVVLFNQMLENSC--SPDVFTYNILIDGYCKQERPQDGAKLLQ 196

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M ++GCEP   +Y T++  LV+  +   AF   + M     +P   + N++I   CK  
Sbjct: 197 EMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK-V 255

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +D A+++F+ M +RGC PD YTY  +I+G CR  +I +A++L + M    C P VVTY
Sbjct: 256 GQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTY 315

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            S+++GLC++  V+EA  ++E +R+ G   +V T S+L+DGLCK      A +LL+ M  
Sbjct: 316 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 375

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
               P++V Y+ L++G CK  +L +++     M  +G  P    Y  +I   C   + ++
Sbjct: 376 NGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRD 435

Query: 350 AANFLDEMVLGGI 362
               L  M+  G+
Sbjct: 436 GCMLLKTMLERGV 448



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 186/354 (52%), Gaps = 11/354 (3%)

Query: 36  DSATAEYANGFRH---DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92
           DSA   Y +  RH      T+++++  L  + +   A  +L+ + +  C      + ++ 
Sbjct: 85  DSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLI 144

Query: 93  RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ 152
            G+ ++    +A+ +F++M E  C P   +Y  ++    ++ + +   +  + M + G +
Sbjct: 145 NGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCE 204

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P   + N L+ +L K+   +DA F + + M  R C P  +T+  +I+  C++G++  A E
Sbjct: 205 PNFITYNTLMDSLVKSGKYIDA-FNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYE 263

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           LF+ M  + C P + TY  +I+G C++  +++A +L E M   G  P+V TY+S++ GLC
Sbjct: 264 LFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLC 323

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K     +A E+ +++ +  +  ++VT STL++GLCK  +L +A ++L  M+  G  PD  
Sbjct: 324 KASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVV 383

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
            Y  +I  FC   +  ++  F  EM+  G  P  +T+S+       V+  LCK+
Sbjct: 384 AYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSI-------VIDKLCKS 430


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/495 (27%), Positives = 234/495 (47%), Gaps = 48/495 (9%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           ++  + V  ++R+ K    A+  F  A  +   GF+HD  T++ +++ LV+   +     
Sbjct: 83  QVLGSHVAAVLRSLKVTGTAISFFRWAGEQ--AGFQHDVFTYNCLMNLLVAEKNYSQCYA 140

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           + + + K         F  + R + R  R  DA+  F+ MK   C+P   +++ ++  L 
Sbjct: 141 IHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLC 200

Query: 132 EENQLKLAFRFYRHM-----------------------------REI-------GIQPCV 155
           +    + AF  +  M                             RE+       G  P  
Sbjct: 201 KAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDA 260

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N +I  L K +G    A K+   M  + C P   TYG L+N LC+ G +  A+ELF+
Sbjct: 261 IAYNTMIDGLAK-AGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFR 319

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            M      P  V YTSLI+G  +S  ++EA  LF+EM   G  P+V T++ ++DGLCK G
Sbjct: 320 VMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSG 379

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              QA +  + M+    +PN+VTY+T++ GL K G++  A  I+  M   G  PD+  Y 
Sbjct: 380 NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYI 439

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP--NRAFQ 393
            ++  FC +G+  EAA  LDE+       ++ + S ++++++++V+GLC      N    
Sbjct: 440 CLLDGFCKLGRLDEAAQLLDEL-------DKCSSSPNLQLYSSLVKGLCDGGSVENTLDD 492

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++   +  + ++D     S+I   CK G + ++ RI   +V +GC PD  T++ ++  L 
Sbjct: 493 LFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLC 552

Query: 454 DRRKMRQAAELLLLE 468
             R+ R      LL 
Sbjct: 553 RSRENRVERAFALLH 567



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 200/425 (47%), Gaps = 11/425 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+R D  T ++MI  L  +  F  A    + + +  C      + +I +G  ++ R  +A
Sbjct: 360 GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+   M   GC P   +YI +L    +  +L  A +    + +    P +   + L+K 
Sbjct: 420 FRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKG 479

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC      +    +F +        D     ++I GLC+ G++ EA  +F+ M ++ C P
Sbjct: 480 LCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKP 539

Query: 225 TVVTYTSLINGLCQSKS--VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              TY  LINGLC+S+   VE A  L  ++   G  P+  TY+ L  GLCK G   +A++
Sbjct: 540 DATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVK 599

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +L+   S+    ++V Y+ L  GLC +G++  AV +   M  QG  PDA  Y  II+   
Sbjct: 600 MLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI 659

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
              K ++A  F DEM+  G  P   T++        +VQ LC   + + AF  +  M  R
Sbjct: 660 KGKKLEDACKFFDEMIGKGQKPTVATYT-------ALVQALCHAGNVDEAFHRFEGMLAR 712

Query: 402 SISVDS-LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
              V S + Y +LI  FCK   +  + ++ ++++  G +P   T +++   L    K  +
Sbjct: 713 GELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEK 772

Query: 461 AAELL 465
           A ELL
Sbjct: 773 AQELL 777



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 197/408 (48%), Gaps = 47/408 (11%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +  R  +A  VF +M++ G  P   +Y T++  L +    + A +   +M      P   
Sbjct: 237 KAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEV 296

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +  +L+ +LCK +GT++ A ++FR M   G  P+S  Y +LI+G  + G++ EA  LF E
Sbjct: 297 TYGILVNSLCK-AGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDE 355

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M      P V+T+T +I+GLC+S + E+A + FEEM   G +PNV TY++++ GL K G 
Sbjct: 356 MVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGR 415

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
            + A  +++ MI+    P+ VTY  LL+G CK G+L EA ++LD +      P+  LY  
Sbjct: 416 VANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSS 475

Query: 337 IISCFCD------------------------------------IGKYQEAANFLDEMVLG 360
           ++   CD                                     G+  EA      MV  
Sbjct: 476 LVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSE 535

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPN---RAFQVYLSMRNRSISVDSLTYSSLITCF 417
           G  P+  T+       N ++ GLC++  N   RAF +   +       D++TY+ L    
Sbjct: 536 GCKPDATTY-------NILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGL 588

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           CK G++ ++ ++++E    G   D   ++A+ T L  + ++ +A  L 
Sbjct: 589 CKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLF 636



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 195/467 (41%), Gaps = 51/467 (10%)

Query: 6   MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ 65
           M +   K        +I+    + +    F       A+G   D+ T+  ++       +
Sbjct: 391 MMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR 450

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRPLDAMRVFDKMKEFGCEPTPKS 122
              A  LLD ++K        ++ S+ +G    G V   LD +  F++ K       P  
Sbjct: 451 LDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDL--FEQSKAAAENLDPGL 508

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN-SGTMDAAFKIFRE 181
             +++  L +  +L  A R ++ M   G +P   + N+LI  LC++    ++ AF +  +
Sbjct: 509 CCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHD 568

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           +   G  PD+ TY  L  GLC++G++  A ++ +E  ++  +  VV YT+L  GLC    
Sbjct: 569 LEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQ 628

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V+ A+ LF+EM  +G  P+   Y  +++GL KG     A +    MI K  +P + TY+ 
Sbjct: 629 VDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQG-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           L+  LC  G + EA    + M  +G L     +Y  +I  FC   K   A    ++M+  
Sbjct: 689 LVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           G  P                                          ++T +SL     + 
Sbjct: 749 GNVPT-----------------------------------------AVTSASLFDGLVRS 767

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           G   K+  ++ E+   G  P   T++A++  L   RK  ++ +LL L
Sbjct: 768 GKTEKAQELLQEMAAGGSPPHAATFTAILDGL---RKSDESGKLLKL 811



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 138/323 (42%), Gaps = 75/323 (23%)

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           +DL ++      ++   +  SI  G  +  R  +A R+F +M   GC+P   +Y  ++  
Sbjct: 491 DDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550

Query: 130 LVE--ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK-------------------- 167
           L    EN+++ AF     +  +G  P   +   L   LCK                    
Sbjct: 551 LCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWN 610

Query: 168 --------------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
                           G +D A  +F+EM  +G  PD+  Y  +INGL +  K+ +A + 
Sbjct: 611 ADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKF 670

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEA---------------------------- 245
           F EM  K   PTV TYT+L+  LC + +V+EA                            
Sbjct: 671 FDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFC 730

Query: 246 --------MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
                   ++LFE+M S+G  P   T +SL DGL + G + +A ELLQ M +    P+  
Sbjct: 731 KALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAA 790

Query: 298 TYSTLLNGLCK---EGKLQEAVE 317
           T++ +L+GL K    GKL + V+
Sbjct: 791 TFTAILDGLRKSDESGKLLKLVQ 813



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 5/226 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +V++A+ + + A++    G+  D   ++ + + L    Q   A  L   + ++       
Sbjct: 593 EVDRAVKMLEEASSR---GWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAA 649

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  I  G  +  +  DA + FD+M   G +PT  +Y  ++  L     +  AF  +  M
Sbjct: 650 AYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGM 709

Query: 147 REIG-IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
              G +   V   + LI   CK +  +DAA K+F +M +RG  P + T  +L +GL R G
Sbjct: 710 LARGELVGSVMIYDALIHGFCK-ALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSG 768

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           K  +A+EL +EM      P   T+T++++GL +S    + ++L +E
Sbjct: 769 KTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G + +VFTY+ LM+ L      SQ   + + M+     PN  +++ L+    +  +  +A
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV-LGGITPNRLTWSLHIR 374
           V   + MK +  KPD   +  ++ C C  G  ++A     EM+ +G + P+R        
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDR-------A 226

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           +H  +V+ L K      A +V+  M       D++ Y+++I    K G   ++ +++D +
Sbjct: 227 LHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNM 286

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
                                              L   CV  EV
Sbjct: 287 -----------------------------------LAKACVPTEV 296


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 210/423 (49%), Gaps = 18/423 (4%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++++I  L   ++   A  + +++N+         +  +  G  +  +  DA  +F K+ 
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G  P+  +Y +++  L   N    A   +  M   G  P   + NV+I A CK  G +
Sbjct: 351 HSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKR-GML 409

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           + A  + ++M   G  PD  TY T+++GLC+  ++ EA  LF EME   C+P   ++ ++
Sbjct: 410 EEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTI 469

Query: 233 INGLCQSKSV---------EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           I GLCQ   +         +EA RL + M   G  P+V TYS+L+ GLC       A  L
Sbjct: 470 ILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 529

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ M+ ++ +P +VT +TL++GLCK G+++EA E+LD M   G  PD   Y  ++   C 
Sbjct: 530 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 589

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
            G+ + A   L +MV  G+ PN +T++        +V GLCK +    A  V+  M++  
Sbjct: 590 AGQTERARELLSDMVARGLAPNVVTYT-------ALVSGLCKANRLPEACGVFAQMKSSG 642

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
            + +  TY++LI  FC  G +    ++  E+V  G  PD   +  +   L    +  +A 
Sbjct: 643 CAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARAL 702

Query: 463 ELL 465
           E+L
Sbjct: 703 EIL 705



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 214/423 (50%), Gaps = 24/423 (5%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHR 100
           +G       ++ +I  L  AN F  A +L   +N+  C    +T ++ +      G +  
Sbjct: 352 SGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEE 411

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             D ++   KM E G  P   +Y TV+  L + ++++ A   +  M  +G  P   S N 
Sbjct: 412 ACDLIK---KMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNT 468

Query: 161 LIKALCKNS--------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           +I  LC+ S        G +D AF++ + M + G  PD  TY TLI+GLC + ++ +A+ 
Sbjct: 469 IILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH 528

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           L ++M  + C PTVVT  +LI+GLC++  ++EA  + + M S G  P+V TY++L+ G C
Sbjct: 529 LLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHC 588

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           + G + +A ELL  M+++   PN+VTY+ L++GLCK  +L EA  +  +MK  G  P+  
Sbjct: 589 RAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLF 648

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RA 391
            Y  +I  FC  G+         EMV  GI+P+      H+ ++ T+   LCK+  + RA
Sbjct: 649 TYTALILGFCSAGQVDGGLKLFGEMVCAGISPD------HV-VYGTLAAELCKSGRSARA 701

Query: 392 FQVYLSMRN--RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            ++    R   RS +     Y   +    + G +  +   V ++V  G LP     ++++
Sbjct: 702 LEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLV 761

Query: 450 TAL 452
             L
Sbjct: 762 AGL 764



 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 215/436 (49%), Gaps = 64/436 (14%)

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +E C +T ++ L      G+V +  + +R    M +  C P   SY TVL  L +  +++
Sbjct: 208 REPCLVTLNVLLEGFCSRGQVDKARELLRA---MPDEECAPDEVSYCTVLDGLCKAGRVE 264

Query: 138 LAFRFYRHMREIGIQPC-------VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
            A R +   RE+            +   N++I  LC+N   +D A ++F +M  R  +PD
Sbjct: 265 EAVRLFGD-RELPSSSSSSSSPPSLRGYNIVILGLCQND-RIDEAVQMFEKMNERNVSPD 322

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           S++YG LI+GL + GK+ +A+ LF+++     +P+ V YTSLI+GLC + S ++A  LF 
Sbjct: 323 SWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFA 382

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE- 309
           +M  +G  P+  TY+ ++D  CK G   +A +L++ MI   H P++VTY+T+++GLCK  
Sbjct: 383 DMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSS 442

Query: 310 -------------------------------------------GKLQEAVEILDRMKLQG 326
                                                      GKL EA  +L RM   G
Sbjct: 443 RVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDG 502

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             PD   Y  +IS  C I +  +A + L++MV     P  +T        NT++ GLCK 
Sbjct: 503 HVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVT-------QNTLIHGLCKA 555

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                A +V  +M +   S D +TY++L+   C+ G   ++  ++ ++V  G  P+  T+
Sbjct: 556 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 615

Query: 446 SAVMTALWDRRKMRQA 461
           +A+++ L    ++ +A
Sbjct: 616 TALVSGLCKANRLPEA 631



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 195/379 (51%), Gaps = 27/379 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +   M E        S  +VL  L++  ++  A + YR  R    +PC+ +LNVL+
Sbjct: 163 DALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRR---EPCLVTLNVLL 219

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           +  C + G +D A ++ R MP+  C PD  +Y T+++GLC+ G++ EA  LF + E  + 
Sbjct: 220 EGFC-SRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSS 278

Query: 223 SPTVVT------YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           S +  +      Y  +I GLCQ+  ++EA+++FE+M  + V P+ ++Y  L+DGL K G 
Sbjct: 279 SSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGK 338

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
            + A  L Q ++     P+ V Y++L++GLC      +A E+   M  +G  P    Y  
Sbjct: 339 LNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNV 398

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           +I   C  G  +EA + + +M+  G  P+ +T+       NTV+ GLCK+     A  ++
Sbjct: 399 MIDASCKRGMLEEACDLIKKMIEDGHVPDVVTY-------NTVMDGLCKSSRVEEALLLF 451

Query: 396 LSM---------RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             M         R+ +  +  L   S I   C++G + ++ R++  +  DG +PD  T+S
Sbjct: 452 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYS 511

Query: 447 AVMTALWDRRKMRQAAELL 465
            +++ L    ++  A  LL
Sbjct: 512 TLISGLCSIARVDDARHLL 530



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 206/462 (44%), Gaps = 93/462 (20%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEF-------------------------------- 114
           +F S+ +G+  V R  +A+++F  M+E                                 
Sbjct: 12  LFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMV 71

Query: 115 --GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             GC P   ++ T+L  L +  ++  A      MR   I P  A+ + L   LC   G+M
Sbjct: 72  DRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLR-GSM 130

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           + AF++   MP      +S  Y  ++  LC+  ++ +A EL + M  K       +  S+
Sbjct: 131 ERAFQLLEIMP----VANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSV 186

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           + GL  S  ++EA++++ E R    EP + T + L++G C  G   +A ELL+ M  +  
Sbjct: 187 LVGLMDSGRIDEALQVYRENRR---EPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEEC 243

Query: 293 RPNIVTYSTLLNGLCKEGKLQ--------------------------------------- 313
            P+ V+Y T+L+GLCK G+++                                       
Sbjct: 244 APDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDR 303

Query: 314 --EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
             EAV++ ++M  + + PD+  YG +I      GK  +A N   +++  G+TP+ + ++ 
Sbjct: 304 IDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYT- 362

Query: 372 HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 +++ GLC  +  + A +++  M  R      +TY+ +I   CK+G + ++  ++
Sbjct: 363 ------SLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLI 416

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
            +++ DG +PD  T++ VM  L    ++ +A  LLL   M +
Sbjct: 417 KKMIEDGHVPDVVTYNTVMDGLCKSSRVEEA--LLLFNEMER 456



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 140/311 (45%), Gaps = 53/311 (17%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G   + R  DA  + + M +  C+PT  +  T++  L +  ++K A      M 
Sbjct: 510 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMV 569

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G  P V + N L+   C+ +G  + A ++  +M  RG  P+  TY  L++GLC+  ++
Sbjct: 570 SSGQSPDVVTYNTLVHGHCR-AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 628

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  +F +M++  C+P + TYT+LI G C +  V+  ++LF EM   G+ P+   Y +L
Sbjct: 629 PEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 688

Query: 268 MDGLCKGGCSSQAMELLQM-------------------------------------MISK 290
              LCK G S++A+E+L+                                      M+  
Sbjct: 689 AAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRG 748

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P     ++L+ GLCK G+  EA  +L+ +       D    GK            +A
Sbjct: 749 GQLPAPERCASLVAGLCKSGQGGEARAVLEEIM------DLAYGGK---------ARGKA 793

Query: 351 ANFLDEMVLGG 361
           A F++EMV  G
Sbjct: 794 AKFVEEMVGKG 804



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 114/279 (40%), Gaps = 38/279 (13%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T+S +IS L S  +   A  LL+ + K +C  T     ++  G  +  R  +
Sbjct: 501 DGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKE 560

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  V D M   G  P   +Y T++       Q + A      M   G+ P V +   L+ 
Sbjct: 561 AREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVS 620

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +  +  A  +F +M + GC P+ +TY  LI G C  G++    +LF EM     S
Sbjct: 621 GLCK-ANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGIS 679

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLF----EEMRSKGVEPNVFTYS-------------- 265
           P  V Y +L   LC+S     A+ +     E +RS+     V+ ++              
Sbjct: 680 PDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMAL 739

Query: 266 -------------------SLMDGLCKGGCSSQAMELLQ 285
                              SL+ GLCK G   +A  +L+
Sbjct: 740 GFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLE 778



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 9/142 (6%)

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           QG+ P   L+  +I  +C++G+  EA      M            S +  ++N ++  L 
Sbjct: 4   QGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLM--------EECHSPYPDVYNVLIDSLS 55

Query: 385 KTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K     A +  +  M +R    DS T+++++   CK G + ++  ++DE+      P   
Sbjct: 56  KRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFA 115

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           T S +   L  R  M +A +LL
Sbjct: 116 TSSFLAHELCLRGSMERAFQLL 137


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 214/417 (51%), Gaps = 15/417 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           +  +++++++ L    + R A  LL R+  + C      + +I  GY  V      +++ 
Sbjct: 109 NTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLV 168

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M+  G +P   +Y +++ +L +  ++    +  R M + G+ P       LI   CK 
Sbjct: 169 KEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCK- 227

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G   AA+K+F EM  R   PDS  +  LI GL   GK+ EA +LF EM  K   P  VT
Sbjct: 228 LGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVT 287

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT+LI+G C+   +++A  L  +M   G+ PNV TY++L DGLCK G    A ELL  M 
Sbjct: 288 YTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMC 347

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K  + NI TY+T++NGLCK G + +AV++++ MK  GL PD   Y  ++  +   G+  
Sbjct: 348 RKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMV 407

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT----DPNRAFQVYLSMRNRSIS 404
           +A   L EM+  G+ P  +T+       N ++ GLC +    D  R  +    M  + I 
Sbjct: 408 KARELLREMLDRGLQPTVVTF-------NVLMNGLCMSGKLEDGERLLK---WMLEKGIM 457

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            ++ TY+S++  +C + ++  S  I   +   G +PD  T++ ++      R M++A
Sbjct: 458 PNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEA 514



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 201/389 (51%), Gaps = 31/389 (7%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+    K++G +P    +     +LVE   L  A +F+  +   G+     S N+ +  L
Sbjct: 27  RLIYTYKDWGSDP--HVFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCL 84

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
                 +    K+F E P  G   ++ +Y  L+N L RLGKI EA  L   ME K C P 
Sbjct: 85  SSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPD 144

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV+YT++I+G C    +++ ++L +EM+ KG++PN++TYSS++  LCK G   +  ++L+
Sbjct: 145 VVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLR 204

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+ +   P+ V Y+TL++G CK G  Q A ++   M+ + + PD+  +  +I      G
Sbjct: 205 EMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSG 264

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIR-------------IHNTVVQ----------- 381
           K  EA    +EM+  G  P+ +T++  I              +HN +VQ           
Sbjct: 265 KVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYT 324

Query: 382 ----GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
               GLCK+ + + A ++   M  + + ++  TY++++   CK G+I ++ ++++E+   
Sbjct: 325 ALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEA 384

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G  PD  T++ +M A +   +M +A ELL
Sbjct: 385 GLHPDTITYTTLMDAYYKTGEMVKARELL 413



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 192/397 (48%), Gaps = 44/397 (11%)

Query: 104 AMRVFDKMKEF-----------------------------------GCEPTPKSYITVLA 128
            ++VF +  +                                    GC P   SY T++ 
Sbjct: 94  VLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIID 153

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
                 +L+   +  + M+  G++P + + + +I  LCK SG +    K+ REM  RG  
Sbjct: 154 GYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCK-SGKVVEGEKVLREMMKRGVF 212

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD   Y TLI+G C+LG    A +LF EME +   P  + +++LI GL  S  V EA +L
Sbjct: 213 PDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKL 272

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EM  KG EP+  TY++L+DG CK G   +A  L   M+     PN+VTY+ L +GLCK
Sbjct: 273 FNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCK 332

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G+L  A E+L  M  +GL+ +   Y  I++  C  G   +A   ++EM   G+ P+ +T
Sbjct: 333 SGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTIT 392

Query: 369 WSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           ++       T++    KT +  +A ++   M +R +    +T++ L+   C  G +    
Sbjct: 393 YT-------TLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGE 445

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           R++  ++  G +P+  T++++M     R  MR + E+
Sbjct: 446 RLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEI 482



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 191/400 (47%), Gaps = 10/400 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D+  ++ +I         + A  L   +   +       F ++  G     + ++A
Sbjct: 210 GVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEA 269

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++F++M + G EP   +Y  ++    +  ++K AF  +  M +IG+ P V +   L   
Sbjct: 270 DKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADG 329

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK SG +D A ++  EM  +G   +  TY T++NGLC+ G I +A +L +EM+     P
Sbjct: 330 LCK-SGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHP 388

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +TYT+L++   ++  + +A  L  EM  +G++P V T++ LM+GLC  G       LL
Sbjct: 389 DTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLL 448

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+ K   PN  TY++++   C    ++ + EI   M  QG+ PD+  Y  +I   C  
Sbjct: 449 KWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKA 508

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
              +EA     EMV          ++L    +N +++G  K      A Q++  MR   +
Sbjct: 509 RNMKEAWFLHKEMV-------EKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGL 561

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
              +  Y+  +    ++G++  +  + DE  ++ CL D+ 
Sbjct: 562 VASAEIYNLFVDMNYEEGNMETTLELCDE-AIEKCLLDKA 600


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 204/395 (51%), Gaps = 13/395 (3%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF-LSICRG-YGRVHRPLDAMRVFDK 110
           FS + S +V    +     L   +  E   I +DI  LSI    +  +HR    + V  K
Sbjct: 65  FSKLFSSIVRMGHYETVVYLSKEI--EFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSK 122

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           + + G EP+  ++ T+L  L  E ++      Y  M   G+QP V + NV+I +L K SG
Sbjct: 123 ILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK-SG 181

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             + A    ++M   GC P+   Y TLI+G C  G++ EA+ +F  M +K C+P V TYT
Sbjct: 182 KANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYT 241

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           SL+NG C+ + +EEA++L +E   KG+ P++ T+++++ GLC+ G    A +L + + + 
Sbjct: 242 SLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAH 301

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
            H PNI+TY  LL+GLCK G L+EA  +   M+   +KP+  +Y  +I   C  GK ++ 
Sbjct: 302 GHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDG 361

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLT 409
                 ++  G+ PN  T++        +V  LCK      A +++  M     + D   
Sbjct: 362 KELFSRLIDEGLKPNVYTYT-------ALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCA 414

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           Y+ +I  F +  D   + ++V+E+V  G   D  T
Sbjct: 415 YNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAAT 449



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 175/374 (46%), Gaps = 37/374 (9%)

Query: 33  VIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92
           V++ S   E+  G   D  + S++I+     ++      +L ++ K   + +   F ++ 
Sbjct: 81  VVYLSKEIEFL-GIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLL 139

Query: 93  RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ 152
            G     +    M ++D M   G +P   +Y  ++  L +  +   A  F + M ++G  
Sbjct: 140 NGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCV 199

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING------------ 200
           P V + + LI   C   G MD A  +F  M ++GCTP+ YTY +L+NG            
Sbjct: 200 PNVVNYSTLIDGYCLR-GQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQ 258

Query: 201 -----------------------LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
                                  LCR G+   A++LF+ +     +P ++TY  L++GLC
Sbjct: 259 LLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLC 318

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +  ++EEA  LF+EM+   V+PN+  Y+ L+D LCK G      EL   +I +  +PN+ 
Sbjct: 319 KHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVY 378

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+ L+  LCKEG + EA ++  +M+  G  PD   Y  II  F        A   ++EM
Sbjct: 379 TYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEM 438

Query: 358 VLGGITPNRLTWSL 371
           V  G + +  T +L
Sbjct: 439 VNRGFSADAATRAL 452



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 161/320 (50%), Gaps = 4/320 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +L  +  E  +++ ++++D        G + +  T++++I+ L  + +   A   
Sbjct: 133 VTFTTLLNGLCMEGKMDQVMMLYDDMLVR---GLQPNVYTYNVIINSLSKSGKANEALGF 189

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++ K  C      + ++  GY    +  +A  VFD M   GC P   +Y +++    +
Sbjct: 190 LKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCK 249

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             +++ A +        G+ P + +   +I  LC+ +G   AA ++FR +   G TP+  
Sbjct: 250 IERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCR-AGRPLAAQQLFRYICAHGHTPNIM 308

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYG L++GLC+ G + EA  LF+EM+     P +V YT LI+ LC+   +++   LF  +
Sbjct: 309 TYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRL 368

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G++PNV+TY++L+  LCK G   +A +L + M      P+   Y+ ++ G  +    
Sbjct: 369 IDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDP 428

Query: 313 QEAVEILDRMKLQGLKPDAG 332
             A ++++ M  +G   DA 
Sbjct: 429 SMARQLVEEMVNRGFSADAA 448



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 139/294 (47%), Gaps = 8/294 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A   FR M  R   P    +  L + + R+G       L KE+E       + + + L
Sbjct: 44  DDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSIL 103

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C    V+  + +  ++   G+EP++ T+++L++GLC  G   Q M L   M+ +  
Sbjct: 104 INCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGL 163

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +PN+ TY+ ++N L K GK  EA+  L +M+  G  P+   Y  +I  +C  G+  EA +
Sbjct: 164 QPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARS 223

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
             D MV  G TPN  T++       +++ G CK +    A Q+      + +  D +T++
Sbjct: 224 VFDLMVSKGCTPNVYTYT-------SLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFT 276

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++I+  C+ G    + ++   +   G  P+  T+  ++  L     + +A  L 
Sbjct: 277 TIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALF 330



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 124/250 (49%), Gaps = 1/250 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           +S +I       Q   A  + D +  + C      + S+  GY ++ R  +A+++ D+  
Sbjct: 205 YSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETL 264

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G  P   ++ T+++ L    +   A + +R++   G  P + +  VL+  LCK+ G +
Sbjct: 265 RKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKH-GNL 323

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           + AF +F+EM      P+   Y  LI+ LC+ GKI + KELF  +  +   P V TYT+L
Sbjct: 324 EEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTAL 383

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           +  LC+   + EA +LF +M   G  P+   Y+ ++ G  +    S A +L++ M+++  
Sbjct: 384 VGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGF 443

Query: 293 RPNIVTYSTL 302
             +  T + L
Sbjct: 444 SADAATRALL 453



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 20/236 (8%)

Query: 51  STFSLMISKLVSANQF---------------RPAEDLLDRVNKEKCDITEDI--FLSICR 93
           S F LM+SK  + N +                 A  LLD   ++   +  DI  F +I  
Sbjct: 223 SVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRK--GLVPDIVTFTTIIS 280

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G  R  RPL A ++F  +   G  P   +Y  +L  L +   L+ AF  ++ M+   ++P
Sbjct: 281 GLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKP 340

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            +    +LI +LCK  G +    ++F  + + G  P+ YTY  L+  LC+ G I EA +L
Sbjct: 341 NLVIYTILIDSLCK-CGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKL 399

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           F++ME   C+P    Y  +I G  Q K    A +L EEM ++G   +  T + L D
Sbjct: 400 FRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALLND 455


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 226/464 (48%), Gaps = 44/464 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRP 101
           +G + +  T+  ++  +        A +LL R  +E   I  +  I+ +I  G  +  R 
Sbjct: 207 DGLQPNQITYGTIVDGMCKIGDTVSALNLL-RKMEEMSHIKPNVVIYSAIIDGLWKDGRH 265

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            DA  ++ +M+E G  P   +Y  ++       +   A R  + M E  I P V + + L
Sbjct: 266 SDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSAL 325

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I A  K     +A  +++ EM  RG  P++ TY ++I+G C+  ++  A+ +F  M TK 
Sbjct: 326 INAYVKERKFFEAE-ELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKG 384

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP V T+ +LI+G C +K +++   L  EM   G+  +  TY++L+ G C  G  + A+
Sbjct: 385 CSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAAL 444

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-----------LQGLKPD 330
           +L Q MIS    P+IVT +TLL+GLC  GKL++A+E+   M+             G++PD
Sbjct: 445 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPD 504

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR---------------- 374
              Y  +IS   + GK+ EA     EM   GI PN +T+S  I                 
Sbjct: 505 VQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFD 564

Query: 375 ------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
                         NT+V G CK    +   +++  M  R I  D++TY +LI  F K G
Sbjct: 565 SMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVG 624

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I+ +  I  E++  G  PD  T  +++T LW + ++++A  +L
Sbjct: 625 NINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAML 668



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 217/434 (50%), Gaps = 25/434 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+ D  TFS ++  L   ++   A DL  ++    C      F ++  G  R  R ++A
Sbjct: 142 GFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEA 197

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +P   +Y T++  + +      A    R M E+  I+P V   + +I 
Sbjct: 198 VALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIID 257

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K+ G    A  ++ EM  +G  PD +TY  +I+G C  G+  EA+ L +EM  +  +
Sbjct: 258 GLWKD-GRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKIN 316

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY++LIN   + +   EA  L++EM  +G+ PN  TY+S++DG CK      A  +
Sbjct: 317 PNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHM 376

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M +K   P++ T++TL++G C   ++ +  E+L  M   GL  D   Y  +I  FC 
Sbjct: 377 FYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCL 436

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
           +G    A +   +M+  G+ P+ +T        NT++ GLC     + A +++ +M+   
Sbjct: 437 VGDLNAALDLSQQMISSGVCPDIVTC-------NTLLDGLCDNGKLKDALEMFKAMQKSK 489

Query: 403 ISVDS-----------LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           + +D+            TY+ LI+    +G   ++  +  E+   G +P+  T+S+++  
Sbjct: 490 MDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMING 549

Query: 452 LWDRRKMRQAAELL 465
           L  + ++ +A ++ 
Sbjct: 550 LCKQSRLDEATQMF 563



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 195/404 (48%), Gaps = 45/404 (11%)

Query: 97  RVHRPLDAMRVFDKM--KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           R+ RP   + ++ KM  K+  C+    S+  ++      ++L  A   +  + ++G QP 
Sbjct: 89  RMERPDLVISLYQKMERKQIPCDVY--SFNILIKCFCSCSKLPFALSTFGKITKLGFQPD 146

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREM--PN---------------------------- 184
           V + + L+  LC     +  A  +F +M  PN                            
Sbjct: 147 VVTFSTLLHGLCVED-RVSEALDLFHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMV 205

Query: 185 -RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTVVTYTSLINGLCQSKSV 242
             G  P+  TYGT+++G+C++G    A  L ++ME  +   P VV Y+++I+GL +    
Sbjct: 206 EDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRH 265

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
            +A  L+ EM+ KG+ P++FTY+ ++DG C  G  S+A  LLQ M+ ++  PN+VTYS L
Sbjct: 266 SDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSAL 325

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           +N   KE K  EA E+ D M  +G+ P+   Y  +I  FC   +   A +    M   G 
Sbjct: 326 INAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGC 385

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
           +P+  T+       NT++ G C     +   ++   M    +  D+ TY++LI  FC  G
Sbjct: 386 SPDVFTF-------NTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVG 438

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D++ +  +  +++  G  PD  T + ++  L D  K++ A E+ 
Sbjct: 439 DLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 482



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 153/295 (51%), Gaps = 13/295 (4%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L+  + R+ +      L+++ME K     V ++  
Sbjct: 58  LEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNI 117

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI   C    +  A+  F ++   G +P+V T+S+L+ GLC     S+A++L   M    
Sbjct: 118 LIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMC--- 174

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RPN+VT++TL+NGLC+EG++ EAV +LDRM   GL+P+   YG I+   C IG    A 
Sbjct: 175 -RPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSAL 233

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLT 409
           N L +M  +  I PN       + I++ ++ GL K   +  A  +Y  M+ + I  D  T
Sbjct: 234 NLLRKMEEMSHIKPN-------VVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFT 286

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+ +I  FC  G   ++ R++ E++     P+  T+SA++ A    RK  +A EL
Sbjct: 287 YNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEEL 341



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 164/323 (50%), Gaps = 14/323 (4%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V   N L+  + +     D    ++++M  +    D Y++  LI   C   K+  A  
Sbjct: 75  PSVIDFNKLMGVVVRMERP-DLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALS 133

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            F ++      P VVT+++L++GLC    V EA+ LF +M      PNV T+++LM+GLC
Sbjct: 134 TFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLC 189

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-LQGLKPDA 331
           + G   +A+ LL  M+    +PN +TY T+++G+CK G    A+ +L +M+ +  +KP+ 
Sbjct: 190 REGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNV 249

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NR 390
            +Y  II      G++ +A N   EM   GI P+  T+       N ++ G C +   + 
Sbjct: 250 VIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTY-------NCMIDGFCSSGRWSE 302

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A ++   M  R I+ + +TYS+LI  + K+    ++  + DE++  G +P+  T+++++ 
Sbjct: 303 AQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMID 362

Query: 451 ALWDRRKMRQAAELLLLELMNKC 473
               + ++  A  +  +     C
Sbjct: 363 GFCKQNRLDAAEHMFYVMATKGC 385



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 153/291 (52%), Gaps = 12/291 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ +I     A +     +LL  + +         + ++  G+  V     A
Sbjct: 384 GCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAA 443

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GIQP 153
           + +  +M   G  P   +  T+L  L +  +LK A   ++ M++            G++P
Sbjct: 444 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEP 503

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V + N+LI  L  N G    A ++++EMP+RG  P++ TY ++INGLC+  ++ EA ++
Sbjct: 504 DVQTYNILISGLI-NEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQM 562

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F  M +K+ SP VVT+ +L++G C++  V++ + LF EM  +G+  +  TY +L+ G  K
Sbjct: 563 FDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRK 622

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            G  + A+++ Q MIS    P+ +T  ++L  L  + +L+ AV +L+ +++
Sbjct: 623 VGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQM 673



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 36/210 (17%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++++IS L++  +F  AE+L                               
Sbjct: 499 NGVEPDVQTYNILISGLINEGKFLEAEEL------------------------------- 527

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               + +M   G  P   +Y +++  L ++++L  A + +  M      P V + N L+ 
Sbjct: 528 ----YKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVS 583

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK +G +D   ++F EM  RG   D+ TY TLI+G  ++G I  A ++F+EM +    
Sbjct: 584 GYCK-AGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVY 642

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           P  +T  S++  L   + ++ A+ + E+++
Sbjct: 643 PDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 228/453 (50%), Gaps = 37/453 (8%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLD-AMRVF 108
           TF+ +I+ L    + R AE +L ++ +   D++ D+F   S+  G+ R +R LD A  VF
Sbjct: 200 TFNTLINILSKKGKVREAELILSQIFQY--DLSPDVFTYTSLILGHCR-NRNLDLAFGVF 256

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M + GC+P   +Y T++  L  E ++  A      M E GI+P V +  + I ALC  
Sbjct: 257 DRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAI 316

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
               +A   + R M  RGC P+  TY  LI+GL RLGK+  A  L+ +M  +   P  VT
Sbjct: 317 EHEEEAIELVAR-MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LIN LC       A+++F  M   G   N  TY+ ++ GLC GG   +AM L + M+
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 435

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                P +VTY+TL+NG   +G +  A  +LD MK  G +PD   Y +++S F   GK +
Sbjct: 436 KMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLE 495

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIH----------------------------NTVV 380
            A+ +  EMV  G+ PN ++++  I  H                            N V+
Sbjct: 496 SASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVI 555

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GL K +  + A ++   M  + +  + +TY++LI   C+ G    + +I  ++    CL
Sbjct: 556 NGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL 615

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           P+  T+S+++  L    K  + AE+LL E+  K
Sbjct: 616 PNLYTYSSLIYGLCQEGKADE-AEILLKEMERK 647



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 221/441 (50%), Gaps = 12/441 (2%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           ++++ A  +FD    E   G   ++ T+S +I+ L +  +   A D+L+ + ++  + T 
Sbjct: 247 RNLDLAFGVFDRMVKE---GCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTV 303

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             +         +    +A+ +  +MK+ GC P  ++Y  +++ L    +L++A   Y  
Sbjct: 304 YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHK 363

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M + G+ P   + N LI  LC   G    A KIF  M   G   ++ TY  +I GLC  G
Sbjct: 364 MLKEGLVPNTVTYNALINELCV-GGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGG 422

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            I +A  LF++M      PTVVTY +LING     +V  A RL + M+  G EP+ +TY+
Sbjct: 423 DIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYN 482

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            L+ G  K G    A    Q M+     PN V+Y+ L++G  K+GK+  A+ +L RM+  
Sbjct: 483 ELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEM 542

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G  P+   Y  +I+      ++ EA    D+MV  G+ PN +T++       T++ GLC+
Sbjct: 543 GCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYT-------TLIDGLCR 595

Query: 386 TDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               + AF+++  M  R    +  TYSSLI   C++G   ++  ++ E+   G  PDE T
Sbjct: 596 NGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVT 655

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +++++       ++  A  LL
Sbjct: 656 FTSLIDGFVVLGRIDHAFLLL 676



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 227/462 (49%), Gaps = 26/462 (5%)

Query: 2   GVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV 61
           G   + + S ++ +  V +++   KD    +  F   +      ++H+ + F  M+++LV
Sbjct: 62  GSSELKQLSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPF--YKHNMNCFISMLNRLV 119

Query: 62  SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
               F PA+ +  R+          + +  CR    + R  D +   +++   G   +  
Sbjct: 120 RDRVFAPADHI--RI----------LMIKACRNEEEIRRVADFL---NEISGMGFGFSLY 164

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           S  T+L  L +   ++ A   Y+ M   GIQP + + N LI  L K     +A   I  +
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAEL-ILSQ 223

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           +     +PD +TY +LI G CR   +  A  +F  M  + C P  VTY++LINGLC    
Sbjct: 224 IFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGR 283

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V+EA+ + EEM  KG+EP V+TY+  +  LC      +A+EL+  M  +  RPN+ TY+ 
Sbjct: 284 VDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 343

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L++GL + GKL+ A+ +  +M  +GL P+   Y  +I+  C  G++  A      M   G
Sbjct: 344 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403

Query: 362 ITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
              N  T+       N +++GLC   D  +A  ++  M         +TY++LI  +  K
Sbjct: 404 SLANTQTY-------NEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTK 456

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           G+++ +AR++D +  +GC PDE T++ +++      K+  A+
Sbjct: 457 GNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESAS 498



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 173/333 (51%), Gaps = 7/333 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRP 101
           G   +  T++ +I++L    +F  A  +   +           +  I +G    G + + 
Sbjct: 368 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEK- 426

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             AM +F+KM + G  PT  +Y T++   + +  +  A R    M+E G +P   + N L
Sbjct: 427 --AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 484

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +    K  G +++A   F+EM   G  P+  +Y  LI+G  + GK+  A  L K ME   
Sbjct: 485 VSGFSK-WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMG 543

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C+P V +Y ++INGL +     EA ++ ++M  +G+ PNV TY++L+DGLC+ G +  A 
Sbjct: 544 CNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAF 603

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   M  ++  PN+ TYS+L+ GLC+EGK  EA  +L  M+ +GL PD   +  +I  F
Sbjct: 604 KIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGF 663

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
             +G+   A   L  MV  G  PN  T+S+ ++
Sbjct: 664 VVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLK 696



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 149/288 (51%), Gaps = 4/288 (1%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+ KA+V+F+        G      T++ +I+  ++      A  LLD + +  C+  E 
Sbjct: 423 DIEKAMVLFEKMLKM---GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEW 479

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  +  G+ +  +   A   F +M E G  P P SY  ++    ++ ++ +A    + M
Sbjct: 480 TYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRM 539

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E+G  P V S N +I  L K +   +A  KI  +M  +G  P+  TY TLI+GLCR G+
Sbjct: 540 EEMGCNPNVESYNAVINGLSKENRFSEAE-KICDKMVEQGLLPNVITYTTLIDGLCRNGR 598

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
              A ++F +ME + C P + TY+SLI GLCQ    +EA  L +EM  KG+ P+  T++S
Sbjct: 599 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTS 658

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           L+DG    G    A  LL+ M+    +PN  TYS LL GL KE  L E
Sbjct: 659 LIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKECLLLE 706


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 212/399 (53%), Gaps = 9/399 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R+D  TF+++I+      Q   A  +L ++ K   +       S+  G+ R +R  DA
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + DKM E G  P   +Y  ++  L +  ++  A  F++ +   GI+P V +   L+  
Sbjct: 175 VSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNG 234

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC NSG  + A ++ R+M  R  TP+  TY  L++   + GK+ EAKE+F+EM   +  P
Sbjct: 235 LC-NSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDP 293

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VTY+SLINGLC    ++EA ++F+ M SKG  P+V +Y++L++G CK       M+L 
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLF 353

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +    N VTY+TL+ G  + G + +A E   +M   G+ PD   Y  ++   CD 
Sbjct: 354 RKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDN 413

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G  ++A    ++M        +    L I  + TV+QG+CKT     A+ ++ S+  + +
Sbjct: 414 GLLEKALVIFEDM-------QKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGL 466

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
             D +TY+++++  C KG  H+   +  ++  +G + ++
Sbjct: 467 KPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKND 505



 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 190/350 (54%), Gaps = 9/350 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V  KM + G EP   +  +++      N++  A      M EIG +P + + N +I 
Sbjct: 139 ALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIID 198

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK     DA    F+E+  +G  P+  TY  L+NGLC  G+  +A  L ++M  +  +
Sbjct: 199 SLCKTRRVNDA-LDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKIT 257

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+TY++L++   ++  V EA  +FEEM    ++P++ TYSSL++GLC      +A ++
Sbjct: 258 PNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQM 317

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M+SK   P++V+Y+TL+NG CK  ++++ +++  +M  +GL  +   Y  +I  F  
Sbjct: 318 FDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQ 377

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           +G   +A  F  +M   G++P+   W+     +N ++ GLC      +A  ++  M+   
Sbjct: 378 VGDVDKAQEFFSQMDSFGVSPD--IWT-----YNILLGGLCDNGLLEKALVIFEDMQKSE 430

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           + +D +TY+++I   CK G +  +  +   L L G  PD  T++ +M+ L
Sbjct: 431 MDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGL 480



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 198/379 (52%), Gaps = 12/379 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M +    P+   +  +L+ +V+  +  +     + M  +GI+  + + N++I
Sbjct: 68  DAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVI 127

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C     +  A  +  +M   G  PD  T G+L+NG CR  ++ +A  L  +M     
Sbjct: 128 NCFC-CCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY 186

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +V Y ++I+ LC+++ V +A+  F+E+  KG+ PNV TY++L++GLC  G  + A  
Sbjct: 187 RPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAAR 246

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ MI ++  PN++TYS LL+   K GK+ EA EI + M    + PD   Y  +I+  C
Sbjct: 247 LLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLC 306

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
              +  EA    D MV  G  P+ +++       NT++ G CK        +++  M  R
Sbjct: 307 LHDRIDEANQMFDLMVSKGCFPDVVSY-------NTLINGFCKAKRVEDGMKLFRKMSQR 359

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  +++TY++LI  F + GD+ K+     ++   G  PD  T++ ++  L D   + +A
Sbjct: 360 GLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKA 419

Query: 462 AELLLLELMNKCVEAEVDI 480
             L++ E M K  E ++DI
Sbjct: 420 --LVIFEDMQKS-EMDLDI 435



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 142/269 (52%), Gaps = 8/269 (2%)

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+++A  LF+EM      P++V +  L++ + + K  +  + L ++M   G+  +++T++
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            +++  C     S A+ +L  M+   + P+ VT  +L+NG C+  ++ +AV ++D+M   
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G +PD   Y  II   C   +  +A +F  E+   GI PN +T++        +V GLC 
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYT-------ALVNGLCN 237

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +   N A ++   M  R I+ + +TYS+L+  F K G + ++  I +E+V     PD  T
Sbjct: 238 SGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVT 297

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKC 473
           +S+++  L    ++ +A ++  L +   C
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGC 326


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 213/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+  +I+ L    +   A +LL+++ K K +    I+ ++     +     DA
Sbjct: 200 GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDA 259

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M   G  P   +Y ++++ L    +   A R    M E  I P V + N LI A
Sbjct: 260 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDA 319

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G +  A K+F EM  R   P+  TY +LING C   ++ EA+++F  M +K C P
Sbjct: 320 FAK-EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP 378

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +LING C++K V + M LF +M  +G+  N  TY++L+ G  +      A  + 
Sbjct: 379 DVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVF 438

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+S    PNI+TY+TLL+GLCK GKL++A+ + + ++   ++PD   Y  +    C  
Sbjct: 439 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKA 498

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSI 403
           GK ++  +    + L G+ P+ + +       NT++ G CK      A+ +++ M+    
Sbjct: 499 GKVEDGWDLFCSLSLKGVKPDVIAY-------NTMISGFCKKGLKEEAYTLFIKMKEDGP 551

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             DS TY++LI    + GD   SA ++ E+       D  T+  V   L D R  +   E
Sbjct: 552 LPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHDGRLDKGFLE 611

Query: 464 LL 465
           +L
Sbjct: 612 VL 613



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 201/383 (52%), Gaps = 12/383 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  KM + G  P+  +  ++L      N++  A      M E+G QP   +   L+ 
Sbjct: 119 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVH 178

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L +++   +A   + R M  +GC PD  TYG +INGLC+ G+   A  L  +ME     
Sbjct: 179 GLFQHNKASEAVALVER-MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 237

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VV Y+++I+ LC+ + V++A+ LF EM +KG+ P+VFTYSSL+  LC  G  S A  L
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M+ ++  PN+VT+++L++   KEGKL EA ++ D M  + + P+   Y  +I+ FC 
Sbjct: 298 LSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCM 357

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             +  EA      MV     P+ +T+       NT++ G CK        +++  M  R 
Sbjct: 358 HDRLDEAQQIFTLMVSKDCLPDVVTY-------NTLINGFCKAKKVVDGMELFRDMSRRG 410

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  +++TY++LI  F +  D   +  +  ++V DG  P+  T++ ++  L    K+ +A 
Sbjct: 411 LVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA- 469

Query: 463 ELLLLELMNKCVEAEVDIQNQDV 485
            +++ E + K  + E DI   ++
Sbjct: 470 -MVVFEYLQKS-KMEPDIYTYNI 490



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 227/492 (46%), Gaps = 65/492 (13%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H+  T+++MI+ L   +Q   A  +L ++ K     +     S+  G+   +R  +A
Sbjct: 95  GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 154

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + D+M E G +P   ++ T++  L + N+   A      M   G QP + +   +I  
Sbjct: 155 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING 214

Query: 165 LCKNSGT----------------------------------MDAAFKIFREMPNRGCTPD 190
           LCK                                      +D A  +F EM N+G  PD
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPD 274

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            +TY +LI+ LC  G+  +A  L  +M  +  +P VVT+ SLI+   +   + EA +LF+
Sbjct: 275 VFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EM  + ++PN+ TY+SL++G C      +A ++  +M+SK   P++VTY+TL+NG CK  
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAK 394

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           K+ + +E+   M  +GL  +   Y  +I  F        A     +MV  G+ PN +T++
Sbjct: 395 KVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYN 454

Query: 371 L----------------------------HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
                                         I  +N + +G+CK       + ++ S+  +
Sbjct: 455 TLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLK 514

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D + Y+++I+ FCKKG   ++  +  ++  DG LPD GT++ ++ A    R   +A
Sbjct: 515 GVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRA--HLRDGDKA 572

Query: 462 AELLLLELMNKC 473
           A   L++ M  C
Sbjct: 573 ASAELIKEMRSC 584



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 10/370 (2%)

Query: 98  VHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +H  LD A+ +F +M +    P+   +  +L+ + +  +  L   F   M  +G+   + 
Sbjct: 42  LHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLY 101

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N++I  LC+ S  +  A  I  +M   G  P   T  +L+NG C   +I EA  L  +
Sbjct: 102 TYNIMINCLCRRS-QLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 160

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M      P  VT+T+L++GL Q     EA+ L E M  KG +P++ TY ++++GLCK G 
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
              A+ LL  M   +   ++V YST+++ LCK   + +A+ +   M  +G++PD   Y  
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           +ISC C+ G++ +A+  L +M+   I PN +T+       N+++    K      A +++
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTF-------NSLIDAFAKEGKLIEAEKLF 333

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M  RSI  + +TY+SLI  FC    + ++ +I   +V   CLPD  T++ ++      
Sbjct: 334 DEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393

Query: 456 RKMRQAAELL 465
           +K+    EL 
Sbjct: 394 KKVVDGMELF 403



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 164/313 (52%), Gaps = 9/313 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F EM      P    +  L++ + ++ K        ++ME    S  + TY  
Sbjct: 46  LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +IN LC+   +  A+ +  +M   G  P++ T +SL++G C G   S+A+ L+  M+   
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P+ VT++TL++GL +  K  EAV +++RM ++G +PD   YG +I+  C  G+   A 
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTY 410
           N L++M  G I  +       + I++TV+  LCK    + A  ++  M N+ I  D  TY
Sbjct: 226 NLLNKMEKGKIEAD-------VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           SSLI+C C  G    ++R++ +++     P+  T+++++ A     K+ + AE L  E++
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIE-AEKLFDEMI 337

Query: 471 NKCVEAEVDIQNQ 483
            + ++  +   N 
Sbjct: 338 QRSIDPNIVTYNS 350


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 237/455 (52%), Gaps = 23/455 (5%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VLQ +  +  V++A+ +       +  G   D  +++ ++  L  A ++   +DL++ + 
Sbjct: 187 VLQAVCDQGPVDEAVRLLRDLLPSF--GCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMV 244

Query: 78  KEKCDITEDIFLSI----CRG--YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
              C      F ++    CR   + RVH       V  +M E GC P  + Y T++  + 
Sbjct: 245 AAGCPPNIVTFSTLIGHLCRNGLFERVHE------VHAQMAEHGCAPDVRMYATIIDGVC 298

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +E +L++A      M   G+ P V   N L+K LC ++   + A  +  EM ++ C  D 
Sbjct: 299 KEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLC-SADRWEEAEGLLAEMFDKDCPLDD 357

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            T+  L++ LC+ G +    E+ ++M    C P V+TYT++ING C+   ++EA+ L   
Sbjct: 358 VTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRS 417

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M + G  PN  +Y+ ++ GLC       A EL+  MI +   PN VT++TL+N LCK+G 
Sbjct: 418 MAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 477

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +++A+E+L +M + G  PD   Y  +I      G   EA   L+ MV  G++PN +    
Sbjct: 478 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTI---- 533

Query: 372 HIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
              I++++   L  +   N+  Q++ ++++ ++  D++ Y+++I+  CK+G+  ++   +
Sbjct: 534 ---IYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFL 590

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +V  GC+P+E T++ ++  L     +++A E+L
Sbjct: 591 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEIL 625



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 194/415 (46%), Gaps = 45/415 (10%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  + R      R  DA+ V D M   GC PTP  Y   L      +  + A    R + 
Sbjct: 114 YFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLH 173

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRLGK 206
             G    V + N++++A+C + G +D A ++ R++ P+ GC PD  +Y  ++ GLC   +
Sbjct: 174 GRGCALDVGNCNLVLQAVC-DQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARR 232

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
               ++L +EM    C P +VT+++LI  LC++   E    +  +M   G  P+V  Y++
Sbjct: 233 WGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYAT 292

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA----------- 315
           ++DG+CK      A  +L  M S    PN+V Y+TLL GLC   + +EA           
Sbjct: 293 IIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKD 352

Query: 316 ------------------------VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
                                   +E+L++M   G  PD   Y  +I+ FC  G   EA 
Sbjct: 353 CPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAV 412

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             L  M   G  PN +++++       V++GLC  +    A ++   M  +    + +T+
Sbjct: 413 MLLRSMAACGCRPNTVSYTI-------VLKGLCSAERWVDAEELMSQMIQQGCPPNPVTF 465

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++LI   CKKG + ++  ++ +++++GC PD  ++S V+  L       +A ELL
Sbjct: 466 NTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELL 520



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 160/316 (50%), Gaps = 7/316 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G   +   ++ ++  L SA+++  AE LL  +  + C   D+T +I +      G V R 
Sbjct: 317 GLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDR- 375

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              + V ++M E GC P   +Y TV+    +E  +  A    R M   G +P   S  ++
Sbjct: 376 --VIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIV 433

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K LC     +DA  ++  +M  +GC P+  T+ TLIN LC+ G + +A EL K+M    
Sbjct: 434 LKGLCSAERWVDAE-ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 492

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP +++Y+++I+GL ++ + +EA+ L   M  KG+ PN   YSS+   L   G  ++ +
Sbjct: 493 CSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVI 552

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++ + +     R + V Y+ +++ LCK G+   A+E L  M   G  P+   Y  +I   
Sbjct: 553 QMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGL 612

Query: 342 CDIGKYQEAANFLDEM 357
              G  +EA   L E+
Sbjct: 613 ASEGFVKEAQEILTEL 628



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 151/323 (46%), Gaps = 46/323 (14%)

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY------------------ 229
            P++YTY  L+  LC  G+I +A  +  +M  + C+PT   Y                  
Sbjct: 108 APNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVG 167

Query: 230 -----------------TSLINGLCQSKSVEEAMRLFEE-MRSKGVEPNVFTYSSLMDGL 271
                              ++  +C    V+EA+RL  + + S G EP+V +Y++++ GL
Sbjct: 168 VLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGL 227

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
           C         +L++ M++    PNIVT+STL+  LC+ G  +   E+  +M   G  PD 
Sbjct: 228 CMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDV 287

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NR 390
            +Y  II   C   + + A   L+ M   G++PN       +  +NT+++GLC  D    
Sbjct: 288 RMYATIIDGVCKEERLEVARGILNRMPSYGLSPN-------VVCYNTLLKGLCSADRWEE 340

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A  +   M ++   +D +T++ L+   C+ G + +   ++++++  GC+PD  T++ V+ 
Sbjct: 341 AEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVIN 400

Query: 451 ALWDRRKMRQAAELLLLELMNKC 473
                  + +A  ++LL  M  C
Sbjct: 401 GFCKEGLIDEA--VMLLRSMAAC 421


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 225/442 (50%), Gaps = 11/442 (2%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VLQ +   +D +KAL  F+ A      G+ H   ++  M+  L        A + L  + 
Sbjct: 82  VLQTLGFLRDTSKALQFFNWAQEM---GYTHTEQSYFSMLEILGRNRHLNTARNFLFSIE 138

Query: 78  KEKCDITE---DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           K    I +     F S+ R + R     ++++VF  MK  G  P+  ++ ++L IL++  
Sbjct: 139 KRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRG 198

Query: 135 QLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           +  +A + Y  M    G+ P   + N+LI+  C N G +D  F+IF ++   GC PD  T
Sbjct: 199 RTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMN-GMVDDGFRIFNDLSRFGCEPDVVT 257

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKAC--SPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y TL++GLCR GK+  A  + K M  K+   +P VVTYT+LI G C  + +E+A+ +FEE
Sbjct: 258 YNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEE 317

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-RHRPNIVTYSTLLNGLCKEG 310
           M ++G++ N  TY++L+ GLC+     +  ++L+         P+  T++TL++  C  G
Sbjct: 318 MVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAG 377

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L +A+++ +RM    ++PD+  Y  ++   C  G Y++A + LD+++   I  +     
Sbjct: 378 NLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCK 437

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
             +  +N + + LC+T   +  +       R  + D  +Y +LI   CK+G       ++
Sbjct: 438 PLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELL 497

Query: 431 DELVLDGCLPDEGTWSAVMTAL 452
             ++    LPD  T+ +++  L
Sbjct: 498 VLMLRKDFLPDFETYESLINGL 519



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 159/338 (47%), Gaps = 26/338 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G   D  T++ ++  L  A +   A +++  + K+  D+  ++  + ++ RGY       
Sbjct: 250 GCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIE 309

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI--------GIQPC 154
            A+ VF++M   G +    +Y T++  L E        R +  +++I           P 
Sbjct: 310 KALAVFEEMVNQGLKANNITYNTLIKGLCEA-------RKFEKIKDILEGTAGDGTFSPD 362

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             + N L+   C ++G +D A K+F  M      PDS TY  L+  LC+ G   +A++L 
Sbjct: 363 TCTFNTLMHCHC-HAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLL 421

Query: 215 -KEMETK------ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            K +E K       C P V  Y  +   LC++   ++A + F ++  +G + +  +Y +L
Sbjct: 422 DKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQ-DPPSYKTL 480

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G CK G      ELL +M+ K   P+  TY +L+NGL    K   A++ L++M     
Sbjct: 481 IMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSH 540

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           +P++  +  I++   + G+  E+A+ +  M+   I  N
Sbjct: 541 RPNSSTFHSILAKLLEQGRTSESASLIQLMLDKNIRQN 578



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 181/404 (44%), Gaps = 49/404 (12%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           MG K++      +T   +++   A++++ KAL +F+    +   G + +N T++ +I  L
Sbjct: 281 MGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQ---GLKANNITYNTLIKGL 337

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEP 118
             A +F   +D+L+    +    + D   F ++   +       DA++VF++M E   +P
Sbjct: 338 CEARKFEKIKDILEGTAGDGT-FSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQP 396

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHM--REI-----GIQPCVASLNVLIKALCKNSGT 171
              +Y  ++  L +    + A      +  R+I     G +P VA+ N + K LC+ +G 
Sbjct: 397 DSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCE-TGK 455

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A K FR++  RG T D  +Y TLI G C+ G      EL   M  K   P   TY S
Sbjct: 456 TKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYES 514

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LINGL        A++  E+M      PN  T+ S++  L + G +S++  L+Q+M+ K 
Sbjct: 515 LINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRTSESASLIQLMLDKN 574

Query: 292 HRPNIVTYST--------------------LLNGLCKEGKLQEAVEIL--DRMKLQGLK- 328
            R N+ ++ST                    LL G     K++E +  L   R  +QG K 
Sbjct: 575 IRQNL-SFSTGCVRLLFGAGMNDKAFQLVHLLYGKGYSVKMEELIRYLCHCRKVIQGSKL 633

Query: 329 ----------PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
                      D  L   +I   C+I K  EA +   ++V  G+
Sbjct: 634 LLFSLESHQFVDMDLCNTVIFQLCEINKLSEAFSLYYKLVEMGV 677


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 216/442 (48%), Gaps = 47/442 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ MI   +        +DLL  + K     T      I  G  R     DA
Sbjct: 406 GIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDA 465

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            RVF+ M   G +P    Y T++   V+E + + A R  + M + G+QP V   N +I  
Sbjct: 466 SRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIG 525

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM------- 217
           LCK S  M+ A     EM  RG  P+ YTYG LI+G C+ G++  A   FKEM       
Sbjct: 526 LCK-SRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAP 584

Query: 218 -----------------ETKACS-----------PTVVTYTSLINGLCQSKSVEEAMRLF 249
                             T+A S           P V TY++LI+GL ++  ++ AM L 
Sbjct: 585 NDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELL 644

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            E   KG+ P+VFTY+S++ G CK G   +A +L + M  K   PNI+TY+ L+NGLCK 
Sbjct: 645 SEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKA 704

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+++ A E+ D +  +GL  +A  Y  II  +C  G   +A    DEM L G+ P+   +
Sbjct: 705 GEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVY 764

Query: 370 SLHIRIHNTVVQGLCKTDPN--RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           S        ++ G C+ + N  +A  ++L    +  +  S + ++L+  FCK G + ++ 
Sbjct: 765 S-------ALIDG-CRKEGNTEKALSLFLESVQKGFASTS-SLNALMDGFCKSGKVIEAN 815

Query: 428 RIVDELVLDGCLPDEGTWSAVM 449
           ++++++V     PD  T++ ++
Sbjct: 816 QLLEDMVDKHVKPDHVTYTILI 837



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 214/425 (50%), Gaps = 9/425 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + +  T++ ++  +        A+ LL+ +           + ++  GY +     
Sbjct: 369 ARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTS 428

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
               +  +MK+    PT  +   ++  L     ++ A R +  M  +G++P       LI
Sbjct: 429 RVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLI 488

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K   +  G    A +I + M  +G  PD   Y ++I GLC+  K+ EAK+   EM  +  
Sbjct: 489 KGHVQ-EGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGL 547

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TY +LI+G C+S  ++ A R F+EM   G+ PN    ++L+DG CK G +++A  
Sbjct: 548 KPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATS 607

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M+ +   P++ TYS L++GL + GKLQ A+E+L     +GL PD   Y  IIS FC
Sbjct: 608 IFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFC 667

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
             G   +A    + M   GI+PN +T+       N ++ GLCK  +  RA +++  +  +
Sbjct: 668 KQGGIGKAFQLHEYMCQKGISPNIITY-------NALINGLCKAGEIERARELFDGIPGK 720

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            ++ +++TY+++I  +CK G++ K+ R+ DE+ L G  PD   +SA++          +A
Sbjct: 721 GLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKA 780

Query: 462 AELLL 466
             L L
Sbjct: 781 LSLFL 785



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 215/416 (51%), Gaps = 13/416 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVFD 109
           T++++I  L  A +   A +L   ++K+   +  D+F    +  G+G+  R  +A  + +
Sbjct: 273 TYNVVIGGLCRAGEVDEAFELKKLMDKK--GLVADVFTYSILIDGFGKQKRCTEAKLMLE 330

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M   G +P   +Y  ++   + +     AFR    M   G++  + + N L+K +CK  
Sbjct: 331 EMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCK-F 389

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G M+ A  +  EM   G  PD+ TY  +I G  +       K+L  EM+     PT  T 
Sbjct: 390 GDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTC 449

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             +INGLC+  S+E+A R+FE M S GV+PN   Y++L+ G  + G   +A+ +L++M  
Sbjct: 450 GMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDK 509

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K  +P+++ Y++++ GLCK  K++EA + L  M  +GLKP+   YG +I  +C  G+ Q 
Sbjct: 510 KGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQV 569

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSL 408
           A  +  EM+  GI PN +  +        ++ G CK      A  ++  M  RS+  D  
Sbjct: 570 ADRYFKEMLGCGIAPNDVVCT-------ALIDGYCKEGSTTEATSIFRCMLGRSVHPDVR 622

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           TYS+LI    + G +  +  ++ E +  G +PD  T++++++    +  + +A +L
Sbjct: 623 TYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQL 678



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 219/488 (44%), Gaps = 72/488 (14%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITED--IFLSICRGYGRVHR 100
            G + +  T+  +I     + + + A    DR  KE   C I  +  +  ++  GY +   
Sbjct: 546  GLKPNVYTYGALIHGYCKSGEMQVA----DRYFKEMLGCGIAPNDVVCTALIDGYCKEGS 601

Query: 101  PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              +A  +F  M      P  ++Y  ++  L+   +L+ A        E G+ P V + N 
Sbjct: 602  TTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNS 661

Query: 161  LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
            +I   CK  G +  AF++   M  +G +P+  TY  LINGLC+ G+I  A+ELF  +  K
Sbjct: 662  IISGFCKQGG-IGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGK 720

Query: 221  ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL------------- 267
              +   VTY ++I+G C+S ++ +A RLF+EM  KGV P+ F YS+L             
Sbjct: 721  GLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKA 780

Query: 268  ---------------------MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
                                 MDG CK G   +A +LL+ M+ K  +P+ VTY+ L++  
Sbjct: 781  LSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYH 840

Query: 307  CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
            CK G L+EA +    M+ + L P+A  Y  ++S +   G+  E     DEM+   I P+ 
Sbjct: 841  CKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDG 900

Query: 367  LTWSLHIRIH----------------------------NTVVQGLCKTDP-NRAFQVYLS 397
            +TWS+ I  H                            + ++  LC+ +  +   +V   
Sbjct: 901  VTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEK 960

Query: 398  MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
            +  + +++   T S+L+ CF K G +  +AR++  +V    +PD    + ++    D   
Sbjct: 961  IEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLINVEQDSTD 1020

Query: 458  MRQAAELL 465
               A + L
Sbjct: 1021 SENAGDFL 1028



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           +L+ L++ N+L+L +RFY  M E  +   V +   LI A  + +G      ++  EM  +
Sbjct: 207 LLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFR-AGNAKEGKRLLFEMEEK 265

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           GC+P   TY  +I GLCR G++ EA EL K M+ K     V TY+ LI+G  + K   EA
Sbjct: 266 GCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEA 325

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             + EEM SKG++P    Y++L+DG  + G S +A  + + M+++  + N+ TY+ L+ G
Sbjct: 326 KLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKG 385

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           +CK G +++A  +L+ M + G+KPD   Y  +I  +          + L EM    + P 
Sbjct: 386 VCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPT 445

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
             T  +       ++ GLC+     D +R F++ +S+    +  +++ Y++LI    ++G
Sbjct: 446 AYTCGM-------IINGLCRHGSIEDASRVFEIMVSL---GVKPNAVIYTTLIKGHVQEG 495

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
              ++ RI+  +   G  PD   +++V+  L   RKM +A + L+
Sbjct: 496 RFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLV 540



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 130/270 (48%), Gaps = 8/270 (2%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           LI+G  + G   EA   F   +       ++    L++ L ++  +E   R +  M    
Sbjct: 172 LIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEAN 231

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           V  +V+TY+ L++   + G + +   LL  M  K   P++VTY+ ++ GLC+ G++ EA 
Sbjct: 232 VLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAF 291

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           E+   M  +GL  D   Y  +I  F    +  EA   L+EM   G+ P  + ++      
Sbjct: 292 ELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYT------ 345

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             ++ G  +  D   AF+V   M  R + ++  TY++L+   CK GD+ K+  +++E+++
Sbjct: 346 -ALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIM 404

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G  PD  T++ ++      +   +  +LL
Sbjct: 405 VGIKPDTQTYNNMIEGYLKEQNTSRVKDLL 434



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 138/340 (40%), Gaps = 35/340 (10%)

Query: 52   TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            T++ +I+ L  A +   A +L D +  +        + +I  GY +      A R+FD+M
Sbjct: 693  TYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEM 752

Query: 112  KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN--- 168
               G  P    Y  ++    +E   + A   +    + G     +SLN L+   CK+   
Sbjct: 753  TLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFAS-TSSLNALMDGFCKSGKV 811

Query: 169  -------------------------------SGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                                           +G +  A + F +M  R   P++ TY  L
Sbjct: 812  IEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTAL 871

Query: 198  INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
            ++G    G+  E   LF EM  K   P  VT++ +I+   +     + ++L ++M  KG 
Sbjct: 872  LSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGG 931

Query: 258  EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
              +      L+D LC+    S+ +++L+ +  +    ++ T STL+    K GK+  A  
Sbjct: 932  NVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAAR 991

Query: 318  ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            +L  M      PD+     +I+   D    + A +FL +M
Sbjct: 992  VLKSMVRFKWVPDSTELNDLINVEQDSTDSENAGDFLKQM 1031


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 234/474 (49%), Gaps = 35/474 (7%)

Query: 15  SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLD 74
           S+ +  L  +E   +  L  F     E+  G  H+   F  ++  L +A  +     LLD
Sbjct: 74  SSLLQHLFNSEAQPDLILCYFKWTQKEF--GAIHNVEQFCRLLHLLANAKNYNKIRALLD 131

Query: 75  RVNKEKCDITEDIF--LSICRGYGRVHRPLDAMRV---------------FDKMKEFGCE 117
              K        IF  LS+   +G  +  +  M V               FD+  ++G  
Sbjct: 132 SFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFR 191

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHM--REIGIQPCVASLNVLIKALCKNSGTMDAA 175
            +  S   +L  LV+E ++ +    Y+ M  R IG+   V + +V+I  LCK  G    A
Sbjct: 192 LSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVN--VVTFDVVINGLCK-VGKFQKA 248

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             +  +M   G +P   TY T+I+G C+ GK+++A  L KEM  K   P  +T+  LI+G
Sbjct: 249 GDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDG 308

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C+ ++V  A ++FEEM+ +G++PNV TY+SL++GLC  G   +A+ L   M     +PN
Sbjct: 309 FCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPN 368

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +VTY+ L+NG CK+  L+EA E+LD +  +GL P+   +  +I  +   G+  +A     
Sbjct: 369 VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS 428

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414
            M+  G+ PN       +  +N ++ G C+  +   A ++   M    +  D +TY+ L+
Sbjct: 429 MMLDTGVCPN-------VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV 481

Query: 415 TCFCKKGDIHKSARIVDELVL---DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              CKKG+  K+ R++DE+ L    G   +  T++ ++    ++ K+ +A  LL
Sbjct: 482 DALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLL 535



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 185/379 (48%), Gaps = 42/379 (11%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           AL  FD A  +Y  GFR    + + M+  LV   +    E +   + + +  +    F  
Sbjct: 178 ALEGFDRA-GDY--GFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDV 234

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G  +V +   A  V + MK +G  P+  +Y T++    +  ++  A    + M    
Sbjct: 235 VINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKR 294

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I P   + N+LI   C++   + AA K+F EM  +G  P+  TY +LINGLC  GK+ EA
Sbjct: 295 IHPNEITFNILIDGFCRDE-NVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEA 353

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD- 269
             L  +M      P VVTY +LING C+ K ++EA  + +++  +G+ PNV T+++L+D 
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 270 ----------------------------------GLCKGGCSSQAMELLQMMISKRHRPN 295
                                             G C+ G   +A +L + M     + +
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKL---QGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +VTY+ L++ LCK+G+ ++AV +LD M L   +G + +   Y  +I  FC+ GK +EA  
Sbjct: 474 LVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANR 533

Query: 353 FLDEMVLGGITPNRLTWSL 371
            L+EM+  G+ PNR T+ +
Sbjct: 534 LLNEMLEKGLIPNRTTYDI 552



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 133/305 (43%), Gaps = 37/305 (12%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A GF     T++ +I     A +   A+ LL  +  ++    E  F  +  G+ R     
Sbjct: 257 AWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVT 316

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A +VF++M+  G +P   +Y +++  L    +L  A      M  +G++P V + N LI
Sbjct: 317 AAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALI 376

Query: 163 KALCKN----------------------------------SGTMDAAFKIFREMPNRGCT 188
              CK                                   +G MD AF +   M + G  
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  TY  LI G CR G + EA++L KEME       +VTY  L++ LC+     +A+RL
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL 496

Query: 249 FEEM---RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            +EM     KG   N+ TY+ L+ G C  G   +A  LL  M+ K   PN  TY  L + 
Sbjct: 497 LDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDE 556

Query: 306 LCKEG 310
           + ++G
Sbjct: 557 MMEKG 561



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 7/254 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +++V  A  +F+    +   G + +  T++ +I+ L S  +   A  L D+++       
Sbjct: 312 DENVTAAKKVFEEMQRQ---GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPN 368

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G+ +     +A  + D + + G  P   ++ T++    +  ++  AF    
Sbjct: 369 VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS 428

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M + G+ P V++ N LI   C+  G +  A K+ +EM   G   D  TY  L++ LC+ 
Sbjct: 429 MMLDTGVCPNVSTYNCLIVGFCR-EGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487

Query: 205 GKIYEAKELFKEM---ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           G+  +A  L  EM   E K     +VTY  LI G C    +EEA RL  EM  KG+ PN 
Sbjct: 488 GETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNR 547

Query: 262 FTYSSLMDGLCKGG 275
            TY  L D + + G
Sbjct: 548 TTYDILRDEMMEKG 561


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 217/453 (47%), Gaps = 32/453 (7%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             G   D  T+  ++       QF     L+D + +     TE     +  G  +  +  
Sbjct: 288 GKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKID 347

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +  K+  FG  P    Y  ++  L +   L  A   Y +M  + ++P   + ++LI
Sbjct: 348 DAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILI 407

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            + C+ SG +D A   F  M   G     Y Y +LING C+ G +  A+ LF EM  K  
Sbjct: 408 DSFCR-SGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGV 466

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT  T+TSLI+G C+   V++A +L+ +M   G+ PNV+T+++L+ GLC     ++A E
Sbjct: 467 EPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASE 526

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   ++ ++ +P  VTY+ L+ G C++GK+ +A E+L+ M  +GL PD   Y  +IS  C
Sbjct: 527 LFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLC 586

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWS--LH--------------------------IR 374
             G+  +A +F+D++    +  N + +S  LH                          + 
Sbjct: 587 STGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLV 646

Query: 375 IHNTVVQGLCKTDPNRA--FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
            H  ++ G  K  P+R   F +   M ++ +  D++ Y+S+I  + K+G   K+    D 
Sbjct: 647 CHAVLIDGALK-QPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDL 705

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +V + C P+  T++A+M  L    +M +A  L 
Sbjct: 706 MVTEECFPNVVTYTALMNGLCKAGEMDRAGLLF 738



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 209/432 (48%), Gaps = 45/432 (10%)

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           AE L   +  +  + T   F S+  GY +  +   A ++++KM + G  P   ++  +++
Sbjct: 454 AESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALIS 513

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            L   N++  A   +  + E  I+P   + NVLI+  C++ G +D AF++  +M  +G  
Sbjct: 514 GLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRD-GKIDKAFELLEDMHQKGLV 572

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR- 247
           PD+YTY  LI+GLC  G++ +AK+   ++  +      + Y++L++G CQ   + EA+  
Sbjct: 573 PDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSA 632

Query: 248 ----------------------------------LFEEMRSKGVEPNVFTYSSLMDGLCK 273
                                             L ++M  +G+ P+   Y+S++D   K
Sbjct: 633 SCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSK 692

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A E   +M+++   PN+VTY+ L+NGLCK G++  A  +  RM+   + P++  
Sbjct: 693 EGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSIT 752

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAF 392
           YG  +      G  +EA   L   +L G+  N +T       HN +++G CK    + A 
Sbjct: 753 YGCFLDNLTKEGNMKEAIG-LHHAMLKGLLANTVT-------HNIIIRGFCKLGRFHEAT 804

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +V   M    I  D +TYS+LI  +C+ G++  S ++ D ++  G  PD   ++ ++   
Sbjct: 805 KVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGC 864

Query: 453 WDRRKMRQAAEL 464
               ++ +A EL
Sbjct: 865 CVNGELDKAFEL 876



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 216/460 (46%), Gaps = 9/460 (1%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           VK MF  +       +  L+     V K + +++        G R D  T S ++  +  
Sbjct: 178 VKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCE 237

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
              F  A++ +  +     D++   +  +  G  +  R  +A+ V   +   G      +
Sbjct: 238 LKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVT 297

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y T++       Q +   +    M E+G  P  A+++ L+  L +  G +D A+++  ++
Sbjct: 298 YCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGL-RKQGKIDDAYELVVKV 356

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
              G  P+ + Y  LIN LC+ G + +A+ L+  M      P  +TY+ LI+  C+S  +
Sbjct: 357 GRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRL 416

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           + A+  F+ M   G+   V+ Y+SL++G CK G  S A  L   M +K   P   T+++L
Sbjct: 417 DVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSL 476

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           ++G CK+ ++Q+A ++ ++M   G+ P+   +  +IS  C   K  EA+   DE+V   I
Sbjct: 477 ISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKI 536

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P  +T+       N +++G C+    ++AF++   M  + +  D+ TY  LI+  C  G
Sbjct: 537 KPTEVTY-------NVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTG 589

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            + K+   +D+L       +E  +SA++       ++ +A
Sbjct: 590 RVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEA 629



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 224/499 (44%), Gaps = 62/499 (12%)

Query: 35  FDSATAEYAN----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
            D A   Y+N      R +  T+S++I     + +   A    DR+ ++    T   + S
Sbjct: 381 LDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNS 440

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G  +      A  +F +M   G EPT  ++ ++++   ++ Q++ AF+ Y  M + G
Sbjct: 441 LINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNG 500

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I P V +   LI  LC ++  M  A ++F E+  R   P   TY  LI G CR GKI +A
Sbjct: 501 ITPNVYTFTALISGLC-STNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKA 559

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            EL ++M  K   P   TY  LI+GLC +  V +A    +++  + V+ N   YS+L+ G
Sbjct: 560 FELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHG 619

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
            C+ G   +A+     MI +    ++V ++ L++G  K+   +   ++L  M  QGL+PD
Sbjct: 620 YCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPD 679

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
             +Y  +I  +   G +++A    D MV     PN +T++        ++ GLCK  + +
Sbjct: 680 NVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYT-------ALMNGLCKAGEMD 732

Query: 390 RAFQVYLSMRNRSISVDSLTYSS----------------------------------LIT 415
           RA  ++  M+  ++  +S+TY                                    +I 
Sbjct: 733 RAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIR 792

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM------------TALWDRRKMRQAAE 463
            FCK G  H++ +++ E+  +G  PD  T+S ++              LWD    R    
Sbjct: 793 GFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEP 852

Query: 464 LLL---LELMNKCVEAEVD 479
            L+   L +   CV  E+D
Sbjct: 853 DLVAYNLLIYGCCVNGELD 871



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 178/377 (47%), Gaps = 9/377 (2%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  G  +V + +    +FD+    G  P P +   V+  + E      A    R M   
Sbjct: 195 ALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEAN 254

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G    + + NVLI  LCK     +A  ++ R +  +G   D  TY TL+ G CRL +   
Sbjct: 255 GFDLSIVTYNVLIHGLCKGDRVSEAV-EVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEA 313

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
             +L  EM     SPT    + L++GL +   +++A  L  ++   G  PN+F Y++L++
Sbjct: 314 GIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALIN 373

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            LCKGG   +A  L   M     RPN +TYS L++  C+ G+L  A+   DRM   G+  
Sbjct: 374 SLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGE 433

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388
               Y  +I+  C  G    A +   EM   G+ P   T++       +++ G CK    
Sbjct: 434 TVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFT-------SLISGYCKDLQV 486

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
            +AF++Y  M +  I+ +  T+++LI+  C    + +++ + DELV     P E T++ +
Sbjct: 487 QKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVL 546

Query: 449 MTALWDRRKMRQAAELL 465
           +       K+ +A ELL
Sbjct: 547 IEGYCRDGKIDKAFELL 563



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 179/399 (44%), Gaps = 43/399 (10%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   +  TF+ +IS L S N+   A +L D + + K   TE  +  +  GY R  +   
Sbjct: 499 NGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDK 558

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  + + M + G  P   +Y  +++ L    ++  A  F   + +  ++      + L+ 
Sbjct: 559 AFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLH 618

Query: 164 ALCKNSGTMDAA----------------------------------FKIFREMPNRGCTP 189
             C+    M+A                                   F + ++M ++G  P
Sbjct: 619 GYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRP 678

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+  Y ++I+   + G   +A E +  M T+ C P VVTYT+L+NGLC++  ++ A  LF
Sbjct: 679 DNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLF 738

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           + M++  V PN  TY   +D L K G   +A+ L   M+ K    N VT++ ++ G CK 
Sbjct: 739 KRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAML-KGLLANTVTHNIIIRGFCKL 797

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+  EA ++L  M   G+ PD   Y  +I  +C  G    +    D M+  G+ P+ + +
Sbjct: 798 GRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAY 857

Query: 370 SLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDS 407
                  N ++ G C   + ++AF++   M  R I  D+
Sbjct: 858 -------NLLIYGCCVNGELDKAFELRDDMLRRGIIPDN 889



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 173/355 (48%), Gaps = 5/355 (1%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T++T   +++    +  ++KA  + +     +  G   D  T+  +IS L S  +   A+
Sbjct: 539 TEVTYNVLIEGYCRDGKIDKAFELLEDM---HQKGLVPDTYTYRPLISGLCSTGRVSKAK 595

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           D +D ++K+   + E  + ++  GY +  R ++A+    +M + G       +  ++   
Sbjct: 596 DFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGA 655

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           +++   K  F   + M + G++P       +I    K  G+   AF+ +  M    C P+
Sbjct: 656 LKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSK-EGSFKKAFECWDLMVTEECFPN 714

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY  L+NGLC+ G++  A  LFK M+     P  +TY   ++ L +  +++EA+ L  
Sbjct: 715 VVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHH 774

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            M  KG+  N  T++ ++ G CK G   +A ++L  M      P+ VTYSTL+   C+ G
Sbjct: 775 AML-KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSG 833

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
            +  +V++ D M  +GL+PD   Y  +I   C  G+  +A    D+M+  GI P+
Sbjct: 834 NVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 156/346 (45%), Gaps = 30/346 (8%)

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N L+  L          F  F +   R     +  +  L+       +I++A  + K M 
Sbjct: 123 NSLLHTLLLRESHPKCVFSHFLDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMF 182

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P V T ++L+NGL + +       LF+E  + GV P+ +T S+++  +C+     
Sbjct: 183 ANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFL 242

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A E ++ M +     +IVTY+ L++GLCK  ++ EAVE+   +  +GL  D   Y  ++
Sbjct: 243 RAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLV 302

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITP----------------------------NRLTWS 370
             FC + +++     +DEMV  G +P                             R  + 
Sbjct: 303 LGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFV 362

Query: 371 LHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
            ++ ++N ++  LCK  D ++A  +Y +M   ++  + +TYS LI  FC+ G +  +   
Sbjct: 363 PNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISY 422

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
            D ++ DG       +++++        +  AAE L +E+ NK VE
Sbjct: 423 FDRMIQDGIGETVYAYNSLINGQCKFGDL-SAAESLFIEMTNKGVE 467


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 189/368 (51%), Gaps = 9/368 (2%)

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           ++ M   GC P   +Y  +L  L +  + + A   +R M   G  P V S ++LI  LC+
Sbjct: 40  YNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCR 99

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
               +D A ++  EM + G  P+  TYG+L++GLC++GK+ EA +LF  M  + C P  V
Sbjct: 100 GQ-KVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGV 158

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            Y  LI+G  +   + EA RLFEEM  KG  P VFTY+SL+ G  + G   +   L + M
Sbjct: 159 VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDM 218

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           + +   PNI T++ LL+G CK G + EA  +   M+  G  PD   Y  +I   C  GK 
Sbjct: 219 LRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKP 278

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            EA   L EM+  G+ P+ +++       N ++ G  K+   + A +++  +    +  D
Sbjct: 279 HEAQRLLREMIRSGVGPDIVSY-------NILIDGYSKSGALDHAIKLFYEIPKSGLEPD 331

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           + +YS++I C C+ G +  +  +  +++ +G  PD      ++  L    ++ ++ EL  
Sbjct: 332 AFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQ 391

Query: 467 LELMNKCV 474
             +  +CV
Sbjct: 392 AMVKFECV 399



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 166/310 (53%), Gaps = 9/310 (2%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           S N L++ L K SG  D  +  + +M   GC P++YTYG L+  LC+  +  EA+ +F+ 
Sbjct: 19  SYNYLLEVLAK-SGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  + CSP V +Y+ LI GLC+ + V+EA  L  EM   G +PNV TY SL+ GLCK G 
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A++L   M+ +   P+ V Y+ L++G  K+G + EA  + + M  +G  P    Y  
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395
           ++S F   G++    +   +M+  G  PN  T+       N ++ G CK  D   A +++
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF-------NNLLDGFCKMGDMVEAHRLF 250

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           L MR+     D ++Y++LI   C KG  H++ R++ E++  G  PD  +++ ++      
Sbjct: 251 LEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKS 310

Query: 456 RKMRQAAELL 465
             +  A +L 
Sbjct: 311 GALDHAIKLF 320



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 199/425 (46%), Gaps = 16/425 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   +  T+  ++  L  A +F  A  +   +  + C      +  +  G  R  +  
Sbjct: 45  AAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVD 104

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  + ++M + G +P   +Y ++L+ L +  +LK A   +  M   G  P     NVLI
Sbjct: 105 EAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLI 164

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K  G M  A+++F EM  +GC P  +TY +L++G  R G+    + LFK+M  + C
Sbjct: 165 DGFSKK-GDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGC 223

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P + T+ +L++G C+   + EA RLF EMRS G  P+V +Y++L+ G+C  G   +A  
Sbjct: 224 VPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQR 283

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ MI     P+IV+Y+ L++G  K G L  A+++   +   GL+PDA  Y  II C C
Sbjct: 284 LLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLC 343

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSM 398
             GK   A     +M+  G  P+         +   +V GLC+    T+    FQ  +  
Sbjct: 344 RAGKVGAAFVVFKDMIANGSAPD-------AAVVIPLVIGLCRGERLTESCELFQAMVKF 396

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
               +  +   Y+ L+   CK         I  EL   G  PD      ++  L  R   
Sbjct: 397 ECVPLIPE---YNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLR-RSDD 452

Query: 459 RQAAE 463
           + AAE
Sbjct: 453 KDAAE 457



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 122/241 (50%), Gaps = 8/241 (3%)

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           ++Y  L+  L +S   +     + +M + G  PN +TY  L+  LC+     +A  + + 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M ++   PN+ +YS L+ GLC+  K+ EA E+L+ M   G +P+   YG ++S  C +GK
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
            +EA +    MV  G  P+ +       ++N ++ G  K  D   A++++  M  +    
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGV-------VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP 190

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              TY+SL++ F +KG+  +   +  +++  GC+P+  T++ ++        M +A  L 
Sbjct: 191 TVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLF 250

Query: 466 L 466
           L
Sbjct: 251 L 251



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 8/216 (3%)

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
              +Y+ L++ L K G           M++    PN  TY  LL  LC+  + +EA  + 
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
             M  QG  P+   Y  +I+  C   K  EAA  L+EM+ GG  PN +T+        ++
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTY-------GSL 128

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           + GLCK      A  ++  M  R    D + Y+ LI  F KKGD+ ++ R+ +E++  GC
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           +P   T++++++    + +  +   L    L   CV
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV 224


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 217/451 (48%), Gaps = 31/451 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D   ++ +IS L  A +   A   L  +           F +   GY +  +  +
Sbjct: 413 SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTE 472

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A + FD+M + G  P    Y  ++    +   L  A   +RH+  +G+ P V + +  I 
Sbjct: 473 AAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIH 532

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L KN G +  A K+F E+  +G  PD +TY +LI+G C+ G++ +A EL  EM  K  +
Sbjct: 533 GLLKN-GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 591

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P +  Y +L++GLC+S  ++ A +LF+ M  KG+EP+  TYS+++DG CK    ++A  L
Sbjct: 592 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 651

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M SK  +P+   Y+ L++G CKEG +++A+ +   M  +G       +  +I  +C 
Sbjct: 652 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCK 710

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH-------------------NTVVQGLC 384
             K QEA+    EM+   I P+ +T++  I  H                   N +V  + 
Sbjct: 711 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVT 770

Query: 385 KTD----------PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            T            +  F ++  M  + +  D +TY  +I   CK+ ++ ++ ++ DE+V
Sbjct: 771 YTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVV 830

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G L        ++TAL  R  + +A++LL
Sbjct: 831 GKGMLTKGTIHDLLITALCKREDLTEASKLL 861



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 198/371 (53%), Gaps = 13/371 (3%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           GRV    +A++VF ++KE G  P   +Y ++++   ++ +++ AF  +  M   GI P +
Sbjct: 538 GRVQ---EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 594

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
              N L+  LCK SG +  A K+F  MP +G  PDS TY T+I+G C+   + EA  LF 
Sbjct: 595 FIYNALVDGLCK-SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 653

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM +K   P    Y +L++G C+   +E+AM LF EM  KG      ++++L+DG CK  
Sbjct: 654 EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSC 712

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A +L Q MI+K+  P+ VTY+T+++  CK GK++EA  +   M+ + L  D   Y 
Sbjct: 713 KIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYT 772

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
            ++  +  +G+  E     ++MV  G+ P+ +T+ L I  H       CK D    AF++
Sbjct: 773 SLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAH-------CKEDNLVEAFKL 825

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              +  + +      +  LIT  CK+ D+ ++++++DE+   G  P     S ++ +  +
Sbjct: 826 RDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHE 885

Query: 455 RRKMRQAAELL 465
             KM +A  + 
Sbjct: 886 AGKMDEATRVF 896



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 199/404 (49%), Gaps = 30/404 (7%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           I  G  R  R  +A   F++M++ G +P   +   ++   + E  +    R    M   G
Sbjct: 215 ITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG 274

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I   + + NVLI  LCK  G M+ A +I + M   GC P+S T+  LI G CR   +  A
Sbjct: 275 IPINLITYNVLIHGLCK-FGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRA 333

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            EL  EME +   P+ V+Y ++INGLC  K +  A +L E+M   G++PNV  YS+L+ G
Sbjct: 334 LELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMG 393

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
               G   +A  LL  M      P+I  Y+ +++ L K GK++EA   L  ++ +GLKPD
Sbjct: 394 YASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 453

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH-------------- 376
           A  +G  I  +   GK  EAA + DEM+  G+ PN   +++ I  H              
Sbjct: 454 AVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR 513

Query: 377 --------------NTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
                         +  + GL K      A +V+  ++ + +  D  TYSSLI+ FCK+G
Sbjct: 514 HLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG 573

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ K+  + DE+ L G  P+   ++A++  L     +++A +L 
Sbjct: 574 EVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLF 617



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 225/463 (48%), Gaps = 13/463 (2%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           KT  K      SA +   +R E D+++ L I D   +    G   +  T++++I  L   
Sbjct: 237 KTGLKPDYNACSALIDGFMR-EGDIDEVLRIKDVMVS---CGIPINLITYNVLIHGLCKF 292

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
            +   A ++L  +    C      F  +  GY R H    A+ + D+M++    P+  SY
Sbjct: 293 GKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 352

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             ++  L     L LA +    M   G++P V   + LI     + G ++ A ++   M 
Sbjct: 353 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYA-SEGRIEEARRLLDGMS 411

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             G  PD + Y  +I+ L + GK+ EA     E++ +   P  VT+ + I G  ++  + 
Sbjct: 412 CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMT 471

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           EA + F+EM   G+ PN   Y+ L++G  K G   +A+ + + + +    P++ T S  +
Sbjct: 472 EAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFI 531

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +GL K G++QEA+++   +K +GL PD   Y  +IS FC  G+ ++A    DEM L GI 
Sbjct: 532 HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 591

Query: 364 PNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           PN       I I+N +V GLCK+ D  RA +++  M  + +  DS+TYS++I  +CK  +
Sbjct: 592 PN-------IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN 644

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + ++  +  E+   G  P    ++A++        M +A  L 
Sbjct: 645 VAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLF 687



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 214/428 (50%), Gaps = 19/428 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFL--SICRGYGRVHR 100
           +G + +   +S +I    S  +   A  LLD ++   C  +  DIF   +I     +  +
Sbjct: 378 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS---CSGVAPDIFCYNAIISCLSKAGK 434

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A     +++  G +P   ++   +    +  ++  A +++  M + G+ P      V
Sbjct: 435 MEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTV 494

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI    K +G +  A  IFR +   G  PD  T    I+GL + G++ EA ++F E++ K
Sbjct: 495 LINGHFK-AGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK 553

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P V TY+SLI+G C+   VE+A  L +EM  KG+ PN+F Y++L+DGLCK G   +A
Sbjct: 554 GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRA 613

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +L   M  K   P+ VTYST+++G CK   + EA  +   M  +G++P + +Y  ++  
Sbjct: 614 RKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 673

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
            C  G  ++A N   EM+  G      T S      NT++ G CK+     A Q++  M 
Sbjct: 674 CCKEGDMEKAMNLFREMLQKGFAT---TLSF-----NTLIDGYCKSCKIQEASQLFQEMI 725

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            + I  D +TY+++I   CK G + ++  +  E+     + D  T++++M   +   K+ 
Sbjct: 726 AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLM---YGYNKLG 782

Query: 460 QAAELLLL 467
           Q++E+  L
Sbjct: 783 QSSEVFAL 790



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 202/415 (48%), Gaps = 27/415 (6%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DITE 85
           V +AL +F     +   G   D  T+S +IS      +   A +L D    E C   I  
Sbjct: 540 VQEALKVFSELKEK---GLVPDVFTYSSLISGFCKQGEVEKAFELHD----EMCLKGIAP 592

Query: 86  DIFL------SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
           +IF+       +C+  G + R   A ++FD M E G EP   +Y T++    +   +  A
Sbjct: 593 NIFIYNALVDGLCKS-GDIQR---ARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 648

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
           F  +  M   G+QP     N L+   CK  G M+ A  +FREM  +G    + ++ TLI+
Sbjct: 649 FSLFHEMPSKGVQPHSFVYNALVHGCCK-EGDMEKAMNLFREMLQKGFAT-TLSFNTLID 706

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           G C+  KI EA +LF+EM  K   P  VTYT++I+  C++  +EEA  LF+EM+ + +  
Sbjct: 707 GYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIV 766

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +  TY+SLM G  K G SS+   L + M++K  +P+ VTY  ++   CKE  L EA ++ 
Sbjct: 767 DTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLR 826

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           D +  +G+     ++  +I+  C      EA+  LDEM   G+ P+    S  +R  +  
Sbjct: 827 DEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEA 886

Query: 380 VQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            +       + A +V+  +++  +  D+ T   L+       D   +  ++ +LV
Sbjct: 887 GK------MDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 148/286 (51%), Gaps = 8/286 (2%)

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
            R M  +G  P++YTY  +  GLCR  ++ EAK  F+EM+     P     ++LI+G  +
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
              ++E +R+ + M S G+  N+ TY+ L+ GLCK G   +A E+L+ MI+   +PN  T
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 316

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           +  L+ G C+E  +  A+E+LD M+ + L P A  YG +I+  C       A   L++M 
Sbjct: 317 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 376

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCF 417
             G+ PN       + +++T++ G         A ++   M    ++ D   Y+++I+C 
Sbjct: 377 FSGLKPN-------VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 429

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            K G + +++  + E+   G  PD  T+ A +       KM +AA+
Sbjct: 430 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK 475



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 149/345 (43%), Gaps = 48/345 (13%)

Query: 126 VLAILVEENQL----KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           V+  ++ +NQ+    +L   FY    ++G+   + S ++L   LC NS     A  +  +
Sbjct: 71  VIRAVLHQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSILAVQLC-NSELFGLANGVLTQ 129

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M     TP  Y+  ++++ +           LF        SP V  +  LI+   +   
Sbjct: 130 MIR---TP--YSSSSILDSV-----------LFWFRNYGGSSPVV--FDILIDSYKRMGM 171

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           ++EA  +F   ++           S++  L +  C+S     L+ M  K   PN  TY+ 
Sbjct: 172 LDEAANVFFVAKN----------DSILISLIR--CNS-----LRSMGEKGLVPNTYTYTI 214

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           +  GLC+  ++ EA    + M+  GLKPD      +I  F   G   E     D MV  G
Sbjct: 215 ITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG 274

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           I  N +T+       N ++ GLCK     +A ++   M       +S T+  LI  +C++
Sbjct: 275 IPINLITY-------NVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCRE 327

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++ ++  ++DE+     +P   ++ A++  L   + +  A +LL
Sbjct: 328 HNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLL 372


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 208/436 (47%), Gaps = 44/436 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  TF+ +I+ L    +F  A +  D      C  T   + +I  G  ++     A
Sbjct: 160 GLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAA 219

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR----------------- 147
             +F KM+E GC+P   +Y  ++  L ++  +  A   + +M+                 
Sbjct: 220 AGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQG 279

Query: 148 ------------------EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
                              + I P + + NVL+ A+CK  G +  A  +F+ M   G  P
Sbjct: 280 LCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICK-EGKVSEAQGVFKTMTEMGVEP 338

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY +L+ G     +I EA++LF  M TK C P   +Y  LI G C++K ++EA +LF
Sbjct: 339 DVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLF 398

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            EM  +G+ P+   Y++L+ GLC+ G   +A +L + M S  + P++ TYS LL+G CKE
Sbjct: 399 NEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKE 458

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G L +A  +   M+   LKPD  +Y  +I   C  G  ++A     E+ + G+ PN    
Sbjct: 459 GYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPN---- 514

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
              ++I+ T++  LCK    + A + + +M       D  +Y+ +I  F +  D  ++A+
Sbjct: 515 ---VQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQ 571

Query: 429 IVDELVLDGCLPDEGT 444
           ++ E+   G + + GT
Sbjct: 572 LIGEMRDRGFVAEAGT 587



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 192/365 (52%), Gaps = 10/365 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA-FRFYRHMREIGIQPCVASLNVL 161
           DA+  F+ M      P    +  +L+ +V+  Q   A     + M   G+ P + +L++L
Sbjct: 77  DALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSIL 136

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I     +   +D AF +F +M   G  PD+ T+ TLINGLC++GK  +A E F + E   
Sbjct: 137 IDCF-SHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASG 195

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C PTV TYT++INGLC+      A  LF++M   G +PNV TY+ L+D LCK    ++A+
Sbjct: 196 CQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEAL 255

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   M +KR  P+I TY++L+ GLC   + +EA  +L+ M    + P+   +  ++   
Sbjct: 256 DIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAI 315

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRN 400
           C  GK  EA      M   G+ P+ +T+S       +++ G   + +   A +++ +M  
Sbjct: 316 CKEGKVSEAQGVFKTMTEMGVEPDVVTYS-------SLMYGYSLRMEIVEARKLFDAMIT 368

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +    D+ +Y+ LI  +CK   I ++ ++ +E++  G  PD   ++ ++  L    ++R+
Sbjct: 369 KGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLRE 428

Query: 461 AAELL 465
           A +L 
Sbjct: 429 AQDLF 433



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 148/297 (49%), Gaps = 9/297 (3%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK-ELFKEMETKACSPTVVTY 229
            +D A   F  M +R   P    +  L++ + ++G+ Y A   L K+ME    SP + T 
Sbjct: 74  NIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTL 133

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           + LI+     + V+ A  +F +M   G++P+  T+++L++GLCK G  +QA+E      +
Sbjct: 134 SILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEA 193

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              +P + TY+T++NGLCK G+   A  +  +M+  G +P+   Y  +I   C      E
Sbjct: 194 SGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNE 253

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSL 408
           A +    M    I+P+  T+       N+++QGLC     +     L+ M + +I  +  
Sbjct: 254 ALDIFSYMKAKRISPDIFTY-------NSLIQGLCNFRRWKEASALLNEMTSLNIMPNIF 306

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           T++ L+   CK+G + ++  +   +   G  PD  T+S++M     R ++ +A +L 
Sbjct: 307 TFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLF 363


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 136/499 (27%), Positives = 232/499 (46%), Gaps = 48/499 (9%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           ++  + V  ++R+ K    A+  F  A  +   GF+HD  T++ +++ LV+   +     
Sbjct: 83  QVLGSHVAAVLRSLKVTGTAISFFRWAGEQ--AGFQHDVFTYNCLMNLLVAEKNYSQCYA 140

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           + + + K         F  + R + R  R  DA+  F+ MK   C+P   +++ ++  L 
Sbjct: 141 IHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLC 200

Query: 132 EENQLKLAFRFYRHM-----------------------------REI-------GIQPCV 155
           +    + AF  +  M                             RE+       G  P  
Sbjct: 201 KAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDA 260

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N +I  L K +G    A K+   M  + C P   TYG L+N LC+ G +  A+ELF+
Sbjct: 261 IAYNTMIDGLAK-AGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFR 319

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            M      P  V YTSLI+G  +S  ++EA  LF+EM   G  P+V T++ ++DGLCK G
Sbjct: 320 VMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSG 379

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              QA +  + M+    +PN+VTY+T++ GL K G++  A  I+  M   G  PD+  Y 
Sbjct: 380 NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYI 439

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF--Q 393
            ++  FC +G+  EAA  LDE+     +PN       +++++++V GLC           
Sbjct: 440 CLLDGFCKLGRLDEAAQLLDELDKCSSSPN-------LQLYSSLVNGLCDGGSVEKTLDD 492

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++   +  + ++D     S+I   CK G + ++ RI   +V +GC PD  T++ ++  L 
Sbjct: 493 LFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLC 552

Query: 454 DRRKMRQAAELLLLELMNK 472
             R+ R      LL  + K
Sbjct: 553 RSRENRVERAFALLHDLEK 571



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 201/425 (47%), Gaps = 11/425 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+R D  T ++MI  L  +  F  A    + + +  C      + +I +G  ++ R  +A
Sbjct: 360 GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+   M   GC P   +YI +L    +  +L  A +    + +    P +   + L+  
Sbjct: 420 FRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNG 479

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC           +F +      T D     ++I GLC+ G++ EA  +F+ M ++ C P
Sbjct: 480 LCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKP 539

Query: 225 TVVTYTSLINGLCQSKS--VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              TY  LINGLC+S+   VE A  L  ++   G  P+  TY+ L  GLCK G   +A++
Sbjct: 540 DATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVK 599

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +L+   S+    ++V Y+ L  GLC +G++  AV +   M  QG  PDA  Y  II+   
Sbjct: 600 MLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI 659

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
            + K ++A  F DEM+  G  P   T++        +VQ LC   + + AF  + SM  R
Sbjct: 660 KVKKLEDACKFFDEMIGKGQKPTVATYT-------ALVQALCHAGNVDEAFHRFESMLAR 712

Query: 402 SISVDS-LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
              V S + Y +LI  FCK   +  + ++ ++++  G +P   T +++   L    K  +
Sbjct: 713 GELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEK 772

Query: 461 AAELL 465
           A ELL
Sbjct: 773 AQELL 777



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 198/408 (48%), Gaps = 47/408 (11%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +  R  +A  VF +M++ G  P   +Y T++  L +    + A +   +M      P   
Sbjct: 237 KAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEV 296

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +  +L+ +LCK +GT++ A ++FR M   G  P+S  Y +LI+G  + G++ EA  LF E
Sbjct: 297 TYGILVNSLCK-AGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDE 355

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M      P V+T+T +I+GLC+S + E+A + FEEM   G +PNV TY++++ GL K G 
Sbjct: 356 MVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGR 415

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
            + A  +++ MI+    P+ VTY  LL+G CK G+L EA ++LD +      P+  LY  
Sbjct: 416 VANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSS 475

Query: 337 IISCFCD------------------------------------IGKYQEAANFLDEMVLG 360
           +++  CD                                     G+  EA      MV  
Sbjct: 476 LVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSE 535

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPN---RAFQVYLSMRNRSISVDSLTYSSLITCF 417
           G  P+  T+       N ++ GLC++  N   RAF +   +       D++TY+ L    
Sbjct: 536 GCKPDATTY-------NILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGL 588

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           CK G++ ++ ++++E    G   D   ++A+ T L  + ++ +A  L 
Sbjct: 589 CKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLF 636



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 194/467 (41%), Gaps = 51/467 (10%)

Query: 6   MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ 65
           M +   K        +I+    + +    F       A+G   D+ T+  ++       +
Sbjct: 391 MMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR 450

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRPLDAMRVFDKMKEFGCEPTPKS 122
              A  LLD ++K        ++ S+  G    G V + LD +  F++ K       P  
Sbjct: 451 LDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDL--FEQSKAAAETLDPGL 508

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN-SGTMDAAFKIFRE 181
             +++  L +  +L  A R ++ M   G +P   + N+LI  LC++    ++ AF +  +
Sbjct: 509 CCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHD 568

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           +   G  PD+ TY  L  GLC++G++  A ++ +E  ++  +  VV YT+L  GLC    
Sbjct: 569 LEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQ 628

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V+ A+ LF+EM  +G  P+   Y  +++GL K      A +    MI K  +P + TY+ 
Sbjct: 629 VDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQG-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           L+  LC  G + EA    + M  +G L     +Y  +I  FC   K   A    ++M+  
Sbjct: 689 LVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           G  P                                          ++T +SL     + 
Sbjct: 749 GNVPT-----------------------------------------AVTSASLFDGLVRS 767

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           G   K+  ++ E+   G  P   T++A++  L   RK  ++ +LL L
Sbjct: 768 GKTEKAQELLQEMAAGGSPPHAATFTAILDGL---RKSDESGKLLKL 811



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 139/323 (43%), Gaps = 75/323 (23%)

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           +DL ++       +   +  SI  G  +  R  +A R+F +M   GC+P   +Y  ++  
Sbjct: 491 DDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550

Query: 130 LVE--ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK-------------------- 167
           L    EN+++ AF     + ++G  P   +   L   LCK                    
Sbjct: 551 LCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWN 610

Query: 168 --------------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
                           G +D A  +F+EM  +G  PD+  Y  +INGL ++ K+ +A + 
Sbjct: 611 ADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKF 670

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEA---------------------------- 245
           F EM  K   PTV TYT+L+  LC + +V+EA                            
Sbjct: 671 FDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFC 730

Query: 246 --------MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
                   ++LFE+M S+G  P   T +SL DGL + G + +A ELLQ M +    P+  
Sbjct: 731 KALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAA 790

Query: 298 TYSTLLNGLCK---EGKLQEAVE 317
           T++ +L+GL K    GKL + V+
Sbjct: 791 TFTAILDGLRKSDESGKLLKLVQ 813



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 5/226 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +V++A+ + + A++    G+  D   ++ + + L    Q   A  L   + ++       
Sbjct: 593 EVDRAVKMLEEASS---RGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAA 649

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  I  G  +V +  DA + FD+M   G +PT  +Y  ++  L     +  AF  +  M
Sbjct: 650 AYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESM 709

Query: 147 REIG-IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
              G +   V   + LI   CK +  +DAA K+F +M +RG  P + T  +L +GL R G
Sbjct: 710 LARGELVGSVMIYDALIHGFCK-ALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSG 768

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           K  +A+EL +EM      P   T+T++++GL +S    + ++L +E
Sbjct: 769 KTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G + +VFTY+ LM+ L      SQ   + + M+     PN  +++ L+    +  +  +A
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV-LGGITPNRLTWSLHIR 374
           V   + MK +  KPD   +  ++ C C  G  ++A     EM+ +G + P+R        
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRA------- 226

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           +H  +V+ L K      A +V+  M       D++ Y+++I    K G   ++ +++D +
Sbjct: 227 LHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNM 286

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
                                              L   CV  EV
Sbjct: 287 -----------------------------------LAKACVPTEV 296


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 185/345 (53%), Gaps = 10/345 (2%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           +Y T++  L + N+++ A      M      P   +   +++ LCK    +D A     E
Sbjct: 82  AYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIVERLCKTK-RIDDALATVEE 139

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  RG  PD++ Y  +++GLC+  K+ EA+ LF++M  +  +P VVTY +LINGLC++  
Sbjct: 140 MATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWR 199

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           +E A  LF+EM  KG  P   +Y++L+DG CK      A ++   M+     PN+VTY+T
Sbjct: 200 IETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTT 259

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L++GL K GK+Q A E+LD M  +G+ P+   Y  +I  FC + +  EA   L++MV  G
Sbjct: 260 LIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG 319

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           I P  +T+       N ++  LC+ D    AF+++  M  R      +TY++L+   C  
Sbjct: 320 IAPTVVTY-------NILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHH 372

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +  + R+  E++  GC PD  T+  +   L    K+ +A EL+
Sbjct: 373 KQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELM 417



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 182/349 (52%), Gaps = 10/349 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   ++ TV     +  +L+     Y+ M E G     +   +LI  LCK  G  D A+K
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCK-VGNFDEAYK 66

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +   M  +     +  Y T+IN LC+L ++ EA+EL ++M   A  P  +TY  ++  LC
Sbjct: 67  LLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIVERLC 125

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           ++K +++A+   EEM ++G++P+ F Y+ ++ GLC+     +A  L + M+ +R  PN+V
Sbjct: 126 KTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVV 185

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+TL+NGLCK  +++ A E+   M  +G  P    Y  +I  FC       A +  D+M
Sbjct: 186 TYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKM 245

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
           V     PN +T++       T++ GL K+     A +V   M  + ++ +  TYS LI  
Sbjct: 246 VRSNCVPNVVTYT-------TLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDG 298

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           FCK   + ++ ++++++V  G  P   T++ ++ +L    K+  A +L 
Sbjct: 299 FCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLF 347



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 188/386 (48%), Gaps = 11/386 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F ++  G+ +  R      V+  M E G       Y  +++ L +      A++    MR
Sbjct: 13  FNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMR 72

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
               +    + + +I  LCK +  ++ A ++  +M  R   PD+ TYG ++  LC+  +I
Sbjct: 73  LKRFKRKAIAYSTIINWLCKLN-RVEEARELIEKMA-RYAPPDALTYGPIVERLCKTKRI 130

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A    +EM T+   P    Y  +++GLCQ + VEEA  LFE+M  + + PNV TY++L
Sbjct: 131 DDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTL 190

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++GLCK      A EL + M  K + P  V+Y+TL++G CK+  L  A ++ D+M     
Sbjct: 191 INGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNC 250

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            P+   Y  +I      GK Q AA  LD MV  G+TPN  T+S        ++ G CK  
Sbjct: 251 VPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYS-------CLIDGFCKVR 303

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A ++   M  + I+   +TY+ L+   C+   +  + ++   +    C P   T++
Sbjct: 304 RVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYN 363

Query: 447 AVMTALWDRRKMRQAAELLLLELMNK 472
            ++ AL   +++   A  L  E++ K
Sbjct: 364 TLLRALCHHKQL-DGAHRLYAEMIAK 388



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 166/354 (46%), Gaps = 37/354 (10%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F+     +S +I+ L   N+   A +L++++ +         +  I     +  R  DA+
Sbjct: 76  FKRKAIAYSTIINWLCKLNRVEEARELIEKMARY-APPDALTYGPIVERLCKTKRIDDAL 134

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
              ++M   G +P    Y  VL+ L +E +++ A   +  M +  I P V + N LI  L
Sbjct: 135 ATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGL 194

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK +  ++ A+++F+EM  +G  P   +Y TLI+G C+   +  AK++F +M    C P 
Sbjct: 195 CK-AWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPN 253

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VVTYT+LI+GL +S  V+ A  + + M  KGV PNV TYS L+DG CK     +A +LL+
Sbjct: 254 VVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLE 313

Query: 286 MMIS-----------------------------------KRHRPNIVTYSTLLNGLCKEG 310
            M++                                   +R  P +VTY+TLL  LC   
Sbjct: 314 QMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHK 373

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           +L  A  +   M  +G  PDA  Y  +       GK  EA   +++M L    P
Sbjct: 374 QLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 427



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 159/317 (50%), Gaps = 4/317 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +++ +   K ++ AL   +        G + D   ++ ++S L    +   A  L
Sbjct: 115 LTYGPIVERLCKTKRIDDALATVEEMATR---GIKPDAFIYNFVLSGLCQEEKVEEARLL 171

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            +++ K++ +     + ++  G  +  R   A  +F +M   G  PT  SY T++    +
Sbjct: 172 FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 231

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L  A   +  M      P V +   LI  L K SG + AA ++   M  +G TP+  
Sbjct: 232 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSK-SGKVQAAAEVLDGMVKKGVTPNVA 290

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY  LI+G C++ ++ EA +L ++M T+  +PTVVTY  L+N LC++  +E+A +LF  M
Sbjct: 291 TYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM 350

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +   P V TY++L+  LC       A  L   MI+K   P+ +TY TL  GL + GK+
Sbjct: 351 AQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKV 410

Query: 313 QEAVEILDRMKLQGLKP 329
            EA E++++MKL    P
Sbjct: 411 HEAQELMEKMKLTKRNP 427



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 154/285 (54%), Gaps = 9/285 (3%)

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  R   P + T+ T+ +G  + G++ + KE+++ M     +     Y  LI+ LC+  +
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
            +EA +L   MR K  +     YS++++ LCK     +A EL++ M ++   P+ +TY  
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTYGP 119

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           ++  LCK  ++ +A+  ++ M  +G+KPDA +Y  ++S  C   K +EA    ++MV   
Sbjct: 120 IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQR 179

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           I PN +T+       NT++ GLCK      A++++  M  +      ++Y++LI  FCKK
Sbjct: 180 INPNVVTY-------NTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 232

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            D+  +  + D++V   C+P+  T++ ++  L    K++ AAE+L
Sbjct: 233 KDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVL 277


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 223/450 (49%), Gaps = 30/450 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  TFS +I+ L    +   A +L+DR+ +     T     ++  G     +  DA
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + D+M E G +P   +Y  VL ++ +  Q  LA    R M E  I+      +++I  
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+ G++D AF +F EM  +G   D   Y TLI G C  G+  +  +L ++M  +  +P
Sbjct: 257 LCKD-GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITP 315

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV +++LI+   +   + EA  L +EM  +G+ P+  TY+SL+DG CK     +A  +L
Sbjct: 316 DVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML 375

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M+SK   PNI T++ L+NG CK   + + +E+  +M L+G+  D   Y  +I  FC++
Sbjct: 376 DLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 435

Query: 345 GKYQEAANFLDEMVLGGITPNRLTW----------------------------SLHIRIH 376
           GK + A     EMV   + P+ +++                             L I I+
Sbjct: 436 GKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIY 495

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N ++ G+C     + A+ ++ S+  + +  D  TY+ +I   CKKG + ++  +  ++  
Sbjct: 496 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEE 555

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           DG  P+  T++ ++ A        ++A+L+
Sbjct: 556 DGHSPNGCTYNILIRAHLGEGDATKSAKLI 585



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 186/363 (51%), Gaps = 9/363 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A     K+ + G EP   ++ T++  L  E ++  A      M E+G +P + +LN L+ 
Sbjct: 126 AFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVN 185

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC N    DA   I R M   G  P+  TYG ++  +C+ G+   A EL ++ME +   
Sbjct: 186 GLCLNGKVSDAVLLIDR-MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIK 244

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              V Y+ +I+GLC+  S++ A  LF EM  KG + ++  Y++L+ G C  G      +L
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ MI ++  P++V +S L++   KEGKL+EA E+   M  +G+ PD   Y  +I  FC 
Sbjct: 305 LRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
             +  +A + LD MV  G  PN       IR  N ++ G CK +  +   +++  M  R 
Sbjct: 365 ENQLDKANHMLDLMVSKGCGPN-------IRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D++TY++LI  FC+ G +  +  +  E+V     PD  ++  ++  L D  +  +A 
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKAL 477

Query: 463 ELL 465
           E+ 
Sbjct: 478 EIF 480



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 196/377 (51%), Gaps = 19/377 (5%)

Query: 87  IFLSICRGYGRVH------------RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           +F S+  G G+V             +  DA+ +F +M      P    +  + +++    
Sbjct: 27  VFSSVSDGKGKVSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTK 86

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           Q  L     + M   GI   + +L+++I   C+    +  AF    ++   G  PD+ T+
Sbjct: 87  QYDLVLDLCKQMELKGIAHNLYTLSIMINCCCR-CRKLSLAFSAMGKIIKLGYEPDTVTF 145

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            TLINGLC  G++ EA EL   M      PT++T  +L+NGLC +  V +A+ L + M  
Sbjct: 146 STLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVE 205

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G +PN  TY  ++  +CK G ++ AMELL+ M  ++ + + V YS +++GLCK+G L  
Sbjct: 206 TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A  + + M+++G K D  +Y  +I  FC  G++ + A  L +M+   ITP+ + +S  I 
Sbjct: 266 AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALID 325

Query: 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
               V +G  +     A +++  M  R IS D++TY+SLI  FCK+  + K+  ++D +V
Sbjct: 326 CF--VKEGKLR----EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 435 LDGCLPDEGTWSAVMTA 451
             GC P+  T++ ++  
Sbjct: 380 SKGCGPNIRTFNILING 396



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 217/426 (50%), Gaps = 12/426 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V+ A+++ D        GF+ +  T+  ++  +  + Q   A +LL ++ + K  +    
Sbjct: 193 VSDAVLLIDRMVE---TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  I  G  +     +A  +F++M+  G +     Y T++       +     +  R M 
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           +  I P V + + LI    K  G +  A ++ +EM  RG +PD+ TY +LI+G C+  ++
Sbjct: 310 KRKITPDVVAFSALIDCFVK-EGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  +   M +K C P + T+  LING C++  +++ + LF +M  +GV  +  TY++L
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G C+ G    A EL Q M+S+R RP+IV+Y  LL+GLC  G+ ++A+EI ++++   +
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM 488

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           + D G+Y  II   C+  K  +A +    + L G+ P+       ++ +N ++ GLCK  
Sbjct: 489 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPD-------VKTYNIMIGGLCKKG 541

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A  ++  M     S +  TY+ LI     +GD  KSA++++E+   G   D  T  
Sbjct: 542 SLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLR 601

Query: 447 AVMTAL 452
             ++ L
Sbjct: 602 FALSTL 607



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 217/447 (48%), Gaps = 24/447 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           GF+ D   ++ +I     A ++     LL  + K K  IT D+  F ++   + +  +  
Sbjct: 277 GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK--ITPDVVAFSALIDCFVKEGKLR 334

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +  +M + G  P   +Y +++    +ENQL  A      M   G  P + + N+LI
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILI 394

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK +  +D   ++FR+M  RG   D+ TY TLI G C LGK+  AKELF+EM ++  
Sbjct: 395 NGYCK-ANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV 453

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +V+Y  L++GLC +   E+A+ +FE++    +E ++  Y+ ++ G+C       A +
Sbjct: 454 RPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 513

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   +  K  +P++ TY+ ++ GLCK+G L EA  +  +M+  G  P+   Y  +I    
Sbjct: 514 LFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHL 573

Query: 343 DIGKYQEAANFLDEMVLGGITPN----RLTWSLHIRI-----------HNTVVQGLCKTD 387
             G   ++A  ++E+   G + +    R   S   R+             T+++  C  +
Sbjct: 574 GEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEE 633

Query: 388 PNRAFQ---VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               +    ++ +M+      + +TY+++I        I +   ++D++   GC P+  T
Sbjct: 634 NASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVT 693

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMN 471
            S  ++ L  ++ +  +A LLL ++ N
Sbjct: 694 KSTFISGLC-KQDLHGSAILLLRKMEN 719



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 152/302 (50%), Gaps = 8/302 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D    + ++M  +G   + YT   +IN  CR  K+  A     ++      P  VT+++L
Sbjct: 89  DLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTL 148

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           INGLC    V EA+ L + M   G +P + T ++L++GLC  G  S A+ L+  M+    
Sbjct: 149 INGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGF 208

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +PN VTY  +L  +CK G+   A+E+L +M+ + +K DA  Y  II   C  G    A N
Sbjct: 209 QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFN 268

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
             +EM + G       +   I I+ T+++G C     +   ++   M  R I+ D + +S
Sbjct: 269 LFNEMEIKG-------FKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFS 321

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           +LI CF K+G + ++  +  E++  G  PD  T+++++       ++ +A  +L L +  
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK 381

Query: 472 KC 473
            C
Sbjct: 382 GC 383



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 148/293 (50%), Gaps = 8/293 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +F+EM      P    +  L + + R  +     +L K+ME K  +  + T + +
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+ + +  A     ++   G EP+  T+S+L++GLC  G  S+A+EL+  M+   H
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P ++T + L+NGLC  GK+ +AV ++DRM   G +P+   YG ++   C  G+   A  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
            L +M    I  + + +S+       ++ GLCK    + AF ++  M  +    D + Y+
Sbjct: 234 LLRKMEERKIKLDAVKYSI-------IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +LI  FC  G     A+++ +++     PD   +SA++       K+R+A EL
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEEL 339


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 232/452 (51%), Gaps = 16/452 (3%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           K T  +VL+LI   K  +KAL  F+ A      GF H++ ++ LM+  L  A     A +
Sbjct: 86  KTTVFEVLRLI---KTPSKALQFFNWAPEL---GFTHNDQSYFLMLEILGRARNLNVARN 139

Query: 72  LL---DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
            L    R +     + +  F S+ R YG+     ++++VF+ MK  G  P+  ++ ++L 
Sbjct: 140 FLFSIKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLL 199

Query: 129 ILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
           IL++  +  +A   +  M    G+ P   + N+LI+  CKNS  +D  F+ F+EM    C
Sbjct: 200 ILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNS-MVDEGFRFFKEMSRFKC 258

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC--SPTVVTYTSLINGLCQSKSVEEA 245
            PD  TY TL++GLCR GK+  A  +   M  K+   +P VVTYT+L+ G C    ++EA
Sbjct: 259 DPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEA 318

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI-SKRHRPNIVTYSTLLN 304
           + +FEEM SKG++PN  TY++L+ GLC+     +  ++ +  +      P+  T +TL+N
Sbjct: 319 LVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMN 378

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
             C  G L +A+E+ ++M +  ++PD+  Y  +I   C  G ++ A    DE+    I  
Sbjct: 379 AHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILL 438

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                +  +  + ++ + LC+     +A +V+  +  R  + D L++  LI   C++G  
Sbjct: 439 RDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRG-TQDPLSFKILIKGHCREGTF 497

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
                ++  ++    +PD  T+ +++  L  +
Sbjct: 498 EAGYELLVLMLRRDFVPDLETYQSLIDGLLQK 529



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 150/338 (44%), Gaps = 50/338 (14%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT-- 228
           T   A + F   P  G T +  +Y  ++  L R   +  A+     ++ ++     +   
Sbjct: 98  TPSKALQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGTVKLEDR 157

Query: 229 -YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM------------------- 268
            + SLI    ++   +E++++F  M+S GV P+V T++SL+                   
Sbjct: 158 FFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEM 217

Query: 269 -----------------DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
                             G CK     +     + M   +  P++VTY+TL++GLC+ GK
Sbjct: 218 LSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGK 277

Query: 312 LQEAVEILDRM--KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           +  A  +++ M  K   L PD   Y  ++  +C   +  EA    +EMV  G+ PN +T+
Sbjct: 278 VNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITY 337

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                  NT+++GLC+    ++  Q++  ++       D+ T ++L+   C  G+++ + 
Sbjct: 338 -------NTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDAL 390

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + +++++    PD  T+S ++  L  R    +A +L 
Sbjct: 391 EVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLF 428



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 178/412 (43%), Gaps = 33/412 (8%)

Query: 3   VKTMFKWSTKITSAQVL--QLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMI 57
           V  M K ST +    V    L+R    + ++++ALV+F+   ++   G + +  T++ +I
Sbjct: 285 VNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSK---GLKPNEITYNTLI 341

Query: 58  SKLVSANQFRPAEDLLDRVNKEKCDITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGC 116
             L    +    + + +        I +   L ++   +       DA+ VF+KM     
Sbjct: 342 KGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNV 401

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHM-------REIGIQPCVASLNVLIKALCKNS 169
            P   +Y  ++  L +    + A + +  +       R+ G  P VA+   + + LC+N 
Sbjct: 402 RPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNG 461

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
            T  A  ++FR++  RG T D  ++  LI G CR G      EL   M  +   P + TY
Sbjct: 462 KTAKAE-RVFRQLMKRG-TQDPLSFKILIKGHCREGTFEAGYELLVLMLRRDFVPDLETY 519

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            SLI+GL Q      A +  E+M      P   T+ S++  L   GC+ ++   + +M+ 
Sbjct: 520 QSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILARLLAKGCAHESARFIMLMLE 579

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
            + R NI   +  +  L   G   +A +I+  +   G          ++     IG    
Sbjct: 580 GKIRQNINLSTHTVRLLFGSGLRDKAFKIVGLLYANGY---------VVDMEELIGFLSH 630

Query: 350 AANFL--DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSM 398
              FL   +++L  +  ++   ++ I + +TV++GLCK   +  AF +Y  +
Sbjct: 631 NRKFLLAHKLLLFCLEKHQ---NVDIDMCDTVIEGLCKMKRHSEAFGLYYEL 679


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 214/443 (48%), Gaps = 33/443 (7%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ M++    A +   A  L++ +       T +  +      GR+    DA+ VFD M
Sbjct: 221 TYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIP---DALAVFDDM 277

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P+  +Y  +L    +E+  + A      MR  G +P + + NVLI A+C N G 
Sbjct: 278 LHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMC-NEGD 336

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  I   +P+ GC PD+ TY  ++  LC   +  E +EL  EM +  C+P  VT+ +
Sbjct: 337 VDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNT 396

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           ++  LCQ   V+ A+ + + M   G   ++ TYSS++DGLC  G    A+ELL  + S  
Sbjct: 397 IVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYG 456

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+ + Y+T+L GLC   + + A E++  M      PD   +  +++  C  G    A 
Sbjct: 457 CKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAI 516

Query: 352 NFLDEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQGL 383
             +++M   G +P+ +T++                              I   NT+++GL
Sbjct: 517 RVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGL 576

Query: 384 CKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C  D    A Q+  +M   +   D LT++++IT  C+KG + ++   +  +  +GC+P+ 
Sbjct: 577 CGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNS 636

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T+S V+ AL    K + A ELL
Sbjct: 637 STYSIVVDALLKAGKAQAALELL 659



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 211/424 (49%), Gaps = 11/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           +N    D  TF+ +++ L        A +++D +++  C      + SI  G   V R  
Sbjct: 384 SNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVD 443

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +  ++K +GC+P   +Y TVL  L    Q + A      M      P   + N ++
Sbjct: 444 DAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVV 503

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            +LC+  G +D A ++  +M   GC+PD  TY  +I+GLC    I +A EL  ++++  C
Sbjct: 504 ASLCQK-GLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGC 562

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VT+ +L+ GLC     E+A +L   M      P+  T+++++  LC+ G  +QA+E
Sbjct: 563 KPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIE 622

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L++M      PN  TYS +++ L K GK Q A+E+L  M      PD   Y  +IS   
Sbjct: 623 TLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMT--NGTPDLITYNTVISNLT 680

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             GK +EA + L  MV  G+ P+  T+        ++  G+C+ D  +RA ++   +++ 
Sbjct: 681 KAGKMEEALDLLRVMVSNGLCPDTTTY-------RSLAYGVCREDGTDRAVRMLRRVQDT 733

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +S D+  Y+ ++  FC+      +      +V  GC+PDE T+  ++ AL     + +A
Sbjct: 734 GLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEA 793

Query: 462 AELL 465
             LL
Sbjct: 794 KRLL 797



 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 221/458 (48%), Gaps = 26/458 (5%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTF--SLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           ++++ALV+FDS  +    G R+       +++I +L S  +   AE +   +      +T
Sbjct: 165 EIDEALVLFDSMAS---GGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALGPSATVVT 221

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT---VLAILVEENQLKLAFR 141
              + ++  GY R  R  DA R+ + M      P P    T   ++  L    ++  A  
Sbjct: 222 ---YNTMVNGYCRAGRIEDARRLINGM------PFPPDTFTFNPLIRALCVRGRIPDALA 272

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            +  M   G  P V + ++L+ A CK SG   A   +  EM  +GC PD  TY  LIN +
Sbjct: 273 VFDDMLHRGCSPSVVTYSILLDATCKESGYRQA-MALLDEMRAKGCEPDIVTYNVLINAM 331

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C  G + EA  +   + +  C P  VTYT ++  LC S+  +E   L  EM S    P+ 
Sbjct: 332 CNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDE 391

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            T+++++  LC+ G   +A+E++  M       +IVTYS++L+GLC  G++ +AVE+L R
Sbjct: 392 VTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSR 451

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           +K  G KPD   Y  ++   C   +++ A   + EM+     P+ +T+       NTVV 
Sbjct: 452 LKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTF-------NTVVA 504

Query: 382 GLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            LC+    +RA +V   M     S D +TY+ +I   C +  I  +  ++ +L   GC P
Sbjct: 505 SLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKP 564

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           D  T++ ++  L    +   A +L+   + + C   E+
Sbjct: 565 DIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDEL 602



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 173/352 (49%), Gaps = 17/352 (4%)

Query: 130 LVEENQLKLAFRFYRHMREIGIQPC--VASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
           LV+  ++  A   +  M   G + C  V   N+LIK LC + G +  A ++F  +   G 
Sbjct: 160 LVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSD-GRVSDAERVFAAL---GP 215

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           +    TY T++NG CR G+I +A+ L   M      P   T+  LI  LC    + +A+ 
Sbjct: 216 SATVVTYNTMVNGYCRAGRIEDARRLINGMPFP---PDTFTFNPLIRALCVRGRIPDALA 272

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +F++M  +G  P+V TYS L+D  CK     QAM LL  M +K   P+IVTY+ L+N +C
Sbjct: 273 VFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMC 332

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
            EG + EA+ IL  +   G KPDA  Y  ++   C   +++E    L EM      P+ +
Sbjct: 333 NEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEV 392

Query: 368 TWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+       NT+V  LC+    +RA +V   M       D +TYSS++   C  G +  +
Sbjct: 393 TF-------NTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDA 445

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
             ++  L   GC PD   ++ V+  L    +  +A EL+   L + C   EV
Sbjct: 446 VELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEV 497



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 220/458 (48%), Gaps = 22/458 (4%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E DV++AL I  +  +   +G + D  T++ ++  L  + +++  E+LL  +    C   
Sbjct: 334 EGDVDEALNILSNLPS---HGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPD 390

Query: 85  EDIF----LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           E  F     S+C+  G V R   A+ V D M E GC     +Y ++L  L +  ++  A 
Sbjct: 391 EVTFNTIVTSLCQ-QGLVDR---AIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAV 446

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
                ++  G +P   +   ++K LC ++   + A ++  EM    C PD  T+ T++  
Sbjct: 447 ELLSRLKSYGCKPDTIAYTTVLKGLC-STEQWERAEELMAEMLCSDCPPDEVTFNTVVAS 505

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC+ G +  A  + ++M    CSP +VTY  +I+GLC    +++AM L  +++S G +P+
Sbjct: 506 LCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPD 565

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           + T+++L+ GLC       A +L+  M+     P+ +T++T++  LC++G L +A+E L 
Sbjct: 566 IVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLK 625

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M   G  P++  Y  ++      GK Q A   L  M  G  TP+ +T+       NTV+
Sbjct: 626 IMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPDLITY-------NTVI 676

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             L K      A  +   M +  +  D+ TY SL    C++    ++ R++  +   G  
Sbjct: 677 SNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLS 736

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           PD   ++ V+      R+   A +     + + C+  E
Sbjct: 737 PDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDE 774



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 208/437 (47%), Gaps = 14/437 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + +L     E    +A+ + D   A+   G   D  T++++I+ + +      A ++
Sbjct: 287 VTYSILLDATCKESGYRQAMALLDEMRAK---GCEPDIVTYNVLINAMCNEGDVDEALNI 343

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L  +    C      +  + +      R  +   +  +M    C P   ++ T++  L +
Sbjct: 344 LSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQ 403

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  +  A     HM E G    + + + ++  LC + G +D A ++   + + GC PD+ 
Sbjct: 404 QGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLC-DVGRVDDAVELLSRLKSYGCKPDTI 462

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
            Y T++ GLC   +   A+EL  EM    C P  VT+ +++  LCQ   V+ A+R+ E+M
Sbjct: 463 AYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQM 522

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
              G  P++ TY+ ++DGLC   C   AMELL  + S   +P+IVT++TLL GLC   + 
Sbjct: 523 SENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRW 582

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           ++A +++  M      PD   +  +I+  C  G   +A   L  M   G  PN  T+S+ 
Sbjct: 583 EDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSI- 641

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
                 VV  L K    +A    LS M N   + D +TY+++I+   K G + ++  ++ 
Sbjct: 642 ------VVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAGKMEEALDLLR 693

Query: 432 ELVLDGCLPDEGTWSAV 448
            +V +G  PD  T+ ++
Sbjct: 694 VMVSNGLCPDTTTYRSL 710



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 155/361 (42%), Gaps = 44/361 (12%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF----LSICRGYGRVHR 100
           G + D   ++ ++  L S  Q+  AE+L+  +    C   E  F     S+C+  G V R
Sbjct: 456 GCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQ-KGLVDR 514

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A+RV ++M E GC P   +Y  ++  L  E+ +  A      ++  G +P + + N 
Sbjct: 515 ---AIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNT 571

Query: 161 LIKALCK----------------------------------NSGTMDAAFKIFREMPNRG 186
           L+K LC                                     G +  A +  + M   G
Sbjct: 572 LLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENG 631

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           C P+S TY  +++ L + GK   A EL   M     +P ++TY ++I+ L ++  +EEA+
Sbjct: 632 CVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAGKMEEAL 689

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            L   M S G+ P+  TY SL  G+C+   + +A+ +L+ +      P+   Y+ +L G 
Sbjct: 690 DLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGF 749

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           C++ +   A++    M   G  PD   Y  ++      G   EA   L  +   G+   +
Sbjct: 750 CRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGVLDKK 809

Query: 367 L 367
           L
Sbjct: 810 L 810



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 16/249 (6%)

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVE--PNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +  L Q   ++EA+ LF+ M S G    P V   + L+  LC  G  S A  +   +   
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALGPS 216

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
                +VTY+T++NG C+ G++++A  +++ M      PD   +  +I   C  G+  +A
Sbjct: 217 A---TVVTYNTMVNGYCRAGRIEDARRLINGMPF---PPDTFTFNPLIRALCVRGRIPDA 270

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLT 409
               D+M+  G +P+ +T+S+       ++   CK    R A  +   MR +    D +T
Sbjct: 271 LAVFDDMLHRGCSPSVVTYSI-------LLDATCKESGYRQAMALLDEMRAKGCEPDIVT 323

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           Y+ LI   C +GD+ ++  I+  L   GC PD  T++ V+ +L    + ++  ELL    
Sbjct: 324 YNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMT 383

Query: 470 MNKCVEAEV 478
            N C   EV
Sbjct: 384 SNNCAPDEV 392


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/381 (31%), Positives = 206/381 (54%), Gaps = 12/381 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A     K+ + G EP   ++ T+L  L  E ++  A      M      P + +LN ++ 
Sbjct: 144 AFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVN 203

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC      +A   I R M N GC P+ +TYG ++N +C+ G    A +L ++ME +   
Sbjct: 204 GLCLKDRVSEAVDLIARMMAN-GCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIK 262

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTYT +I+ LC+   +++A+  F EM +KG++ NVFTY+SL+   C  G      +L
Sbjct: 263 PHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQL 322

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ MI+++  PN+VT+S L++ L KEGKL EA ++ + M  +G++P+   Y  +I   C+
Sbjct: 323 LRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCN 382

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             +  EA   +D MV  G  P+   W+     +N ++ G CK    +   +++  M  R 
Sbjct: 383 DKRLDEANQMMDLMVSKGCDPD--IWT-----YNILINGFCKAKQVDDGMRLFRKMSLRG 435

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D++TYS+LI  FC+   +  + ++  E+V  G  P   T++ ++  L D  ++ +A 
Sbjct: 436 MIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEA- 494

Query: 463 ELLLLELMNKC-VEAEVDIQN 482
            L +L+ M+KC +E ++ I N
Sbjct: 495 -LGILDQMHKCKMELDIGIYN 514



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 216/423 (51%), Gaps = 11/423 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T + +++ L   ++   A DL+ R+    C   +  +  I     +      A+ +  KM
Sbjct: 197 TLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKM 256

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +    +P   +Y  ++  L ++ +L  A  F+  M   GI+  V + N LI + C + G 
Sbjct: 257 EHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFC-SFGR 315

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D   ++ R+M  R  TP+  T+  LI+ L + GK+ EAK+L+ EM T+   P  +TY S
Sbjct: 316 WDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNS 375

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI GLC  K ++EA ++ + M SKG +P+++TY+ L++G CK       M L + M  + 
Sbjct: 376 LIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRG 435

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              + VTYSTL+ G C+  KL  A ++   M  QG+ P    Y  ++   CD G+ +EA 
Sbjct: 436 MIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEAL 495

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             LD+M       ++    L I I+N ++ G+C  +  + A+ ++ S+ ++ +  D  +Y
Sbjct: 496 GILDQM-------HKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSY 548

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           + +++  CK+  + ++  +  ++  DG  PD  T++ ++ A      +  + +  L+E M
Sbjct: 549 NIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQ--LIEEM 606

Query: 471 NKC 473
            +C
Sbjct: 607 KRC 609



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 189/364 (51%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M      PT   +  +  +L    Q  L     + M   GI   + +LN++I
Sbjct: 73  DAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMI 132

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  AF    ++   G  P++ T+ TL+NGLC  G+++EA EL   M     
Sbjct: 133 NCFCRRR-KLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQH 191

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P ++T  +++NGLC    V EA+ L   M + G +PN FTY  +++ +CK G ++ A++
Sbjct: 192 VPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALD 251

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M  ++ +P++VTY+ +++ LCK+G+L +A+     M+ +G+K +   Y  +I  FC
Sbjct: 252 LLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFC 311

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G++ + A  L +M+   ITPN +T+S        ++  L K      A  +Y  M  R
Sbjct: 312 SFGRWDDGAQLLRDMITRKITPNVVTFS-------ALIDSLVKEGKLTEAKDLYNEMITR 364

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I  +++TY+SLI   C    + ++ +++D +V  GC PD  T++ ++      +++   
Sbjct: 365 GIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDG 424

Query: 462 AELL 465
             L 
Sbjct: 425 MRLF 428



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 206/411 (50%), Gaps = 9/411 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ANG + +  T+  +++++  +     A DLL ++   K       +  I     +  R  
Sbjct: 223 ANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLD 282

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F +M+  G +    +Y +++       +     +  R M    I P V + + LI
Sbjct: 283 DALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALI 342

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            +L K  G +  A  ++ EM  RG  P++ TY +LI GLC   ++ EA ++   M +K C
Sbjct: 343 DSLVK-EGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGC 401

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P + TY  LING C++K V++ MRLF +M  +G+  +  TYS+L+ G C+      A +
Sbjct: 402 DPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKK 461

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + Q M+S+   P I+TY+ LL+GLC  G+L+EA+ ILD+M    ++ D G+Y  II   C
Sbjct: 462 VFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMC 521

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNR 401
           +  K  +A +    +   G+  +       I+ +N ++ GLCK +  + A  ++  M+  
Sbjct: 522 NANKVDDAWSLFCSLPSKGVKRD-------IQSYNIMLSGLCKRSSLSEADALFRKMKED 574

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
               D  TY++LI    +  DI  S ++++E+   G   D  T   VM  L
Sbjct: 575 GYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDML 625



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 175/375 (46%), Gaps = 8/375 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++++I  L    +   A      +  +        + S+   +    R  D  ++   M
Sbjct: 267 TYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDM 326

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
                 P   ++  ++  LV+E +L  A   Y  M   GI+P   + N LI  LC N   
Sbjct: 327 ITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLC-NDKR 385

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A ++   M ++GC PD +TY  LING C+  ++ +   LF++M  +      VTY++
Sbjct: 386 LDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYST 445

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI G CQS+ +  A ++F+EM S+GV P + TY+ L+DGLC  G   +A+ +L  M   +
Sbjct: 446 LIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCK 505

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              +I  Y+ +++G+C   K+ +A  +   +  +G+K D   Y  ++S  C      EA 
Sbjct: 506 MELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEAD 565

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
               +M   G  P+  T++  IR H      L   D   + Q+   M+    S D+ T  
Sbjct: 566 ALFRKMKEDGYEPDGCTYNTLIRAH------LRGNDITTSVQLIEEMKRCGFSSDASTV- 618

Query: 412 SLITCFCKKGDIHKS 426
            ++      G++ KS
Sbjct: 619 KIVMDMLSSGELDKS 633



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 148/293 (50%), Gaps = 8/293 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +F+ M      P    +  L   L R  +      L K+ME K  +  + T   +
Sbjct: 72  DDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIM 131

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+ + +  A     ++   G EPN  T+++L++GLC  G   +A+EL+  M+  +H
Sbjct: 132 INCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQH 191

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            P+++T +T++NGLC + ++ EAV+++ RM   G +P+   YG I++  C  G    A +
Sbjct: 192 VPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALD 251

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
            L +M    I P+ +T+++       ++  LCK    + A   +  M  + I  +  TY+
Sbjct: 252 LLRKMEHRKIKPHVVTYTI-------IIDNLCKDGRLDDALSFFSEMETKGIKANVFTYN 304

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           SLI  FC  G     A+++ +++     P+  T+SA++ +L    K+ +A +L
Sbjct: 305 SLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDL 357



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 113/242 (46%), Gaps = 1/242 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  T++++I+    A Q      L  +++          + ++ +G+ +  + +
Sbjct: 398 SKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLI 457

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A +VF +M   G  P   +Y  +L  L +  +L+ A      M +  ++  +   N++I
Sbjct: 458 VAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIII 517

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             +C N+  +D A+ +F  +P++G   D  +Y  +++GLC+   + EA  LF++M+    
Sbjct: 518 HGMC-NANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGY 576

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   TY +LI    +   +  +++L EEM+  G   +  T   +MD L  G      + 
Sbjct: 577 EPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDMLSSGELDKSFLN 636

Query: 283 LL 284
           +L
Sbjct: 637 ML 638


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 233/465 (50%), Gaps = 22/465 (4%)

Query: 21   LIRAEKDVNK---ALVIFDSATAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
            L R  KD NK   A+++F     E+   G   + ++++++I  +    +   A  LL  +
Sbjct: 640  LARLSKDCNKTATAIIVF----REFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLL--L 693

Query: 77   NKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
              E    T D+  + ++  GY R        ++ +KMK+ G +P   +Y +++ +L    
Sbjct: 694  LMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRIC 753

Query: 135  QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
            +L  A   +  M   GI P       L+   CK  G + AA K F EM +R  TPD  TY
Sbjct: 754  KLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKR-GDIRAASKFFYEMHSRDITPDVLTY 812

Query: 195  GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
              +I+G C++G + EA +LF EM  +   P ++T+T L+NG C++  +++A R+   M  
Sbjct: 813  TAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQ 872

Query: 255  KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             G  PNV TY++L+DGLCK G    A ELL  M     +PNI TY++++NGLCK G ++E
Sbjct: 873  AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE 932

Query: 315  AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
            AV+++   +  GL  D   Y  ++  +C  G+  +A   L EM+  G+ P  +T+     
Sbjct: 933  AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTF----- 987

Query: 375  IHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              N ++ G C        +  L+ M  + I+ ++ T++ L+  +C + ++  +  I  ++
Sbjct: 988  --NVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDM 1045

Query: 434  VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
               G  PD  T+  ++    + R M++A   L  E+  K     V
Sbjct: 1046 CSRGVEPDGKTYENLVKGHCNARNMKEAW-FLFQEMKGKGFSVSV 1089



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 201/396 (50%), Gaps = 32/396 (8%)

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K++G +P  + +     +LVE   L  A + +  M   G+   V S NV +  L K+   
Sbjct: 592 KDWGSDP--RVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNK 649

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A  +FRE P  G   +  +Y  +I+ +C+LG+I EA  L   ME K  +P V++Y++
Sbjct: 650 TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYST 709

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +ING C+   +++  +L E+M+ KG++PN +TY S++  LC+    ++A E    MI + 
Sbjct: 710 VINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQG 769

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+ + Y+TL++G CK G ++ A +    M  + + PD   Y  IIS FC IG   EA 
Sbjct: 770 ILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 829

Query: 352 NFLDEMVLGGITPNRLTWSL---------HI----RIHN---------------TVVQGL 383
               EM+  G+ P+ +T++          HI    R+HN               T++ GL
Sbjct: 830 KLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 889

Query: 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK  D + A ++   M    +  +  TY+S++   CK G+I ++ ++V E    G   D 
Sbjct: 890 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 949

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            T++ +M A     +M +A E +L E++ K ++  +
Sbjct: 950 VTYTTLMDAYCKSGEMDKAQE-ILTEMLGKGLQPTI 984



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 166/334 (49%), Gaps = 5/334 (1%)

Query: 43   ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHR 100
              G   D   ++ ++         R A      ++    DIT D+  + +I  G+ ++  
Sbjct: 767  GQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSR--DITPDVLTYTAIISGFCQIGD 824

Query: 101  PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             ++A ++F +M   G EP   ++  ++    +   +K AFR + HM + G  P V +   
Sbjct: 825  MVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTT 884

Query: 161  LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
            LI  LCK  G +D+A ++  EM   G  P+ +TY +++NGLC+ G I EA +L  E E  
Sbjct: 885  LIDGLCK-EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 943

Query: 221  ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              +   VTYT+L++  C+S  +++A  +  EM  KG++P + T++ LM+G C  G     
Sbjct: 944  GLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 1003

Query: 281  MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             +LL  M++K   PN  T++ L+   C    L+ A  I   M  +G++PD   Y  ++  
Sbjct: 1004 EKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKG 1063

Query: 341  FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
             C+    +EA     EM   G + +  T+S+ I+
Sbjct: 1064 HCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIK 1097



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 137/279 (49%), Gaps = 1/279 (0%)

Query: 88   FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
            F  +  GY +     DA RV + M + GC P   +Y T++  L +E  L  A      M 
Sbjct: 847  FTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 906

Query: 148  EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +IG+QP + + N ++  LCK SG ++ A K+  E    G   D+ TY TL++  C+ G++
Sbjct: 907  KIGLQPNIFTYNSIVNGLCK-SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM 965

Query: 208  YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             +A+E+  EM  K   PT+VT+  L+NG C    +E+  +L   M +KG+ PN  T++ L
Sbjct: 966  DKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCL 1025

Query: 268  MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
            +   C       A  + + M S+   P+  TY  L+ G C    ++EA  +   MK +G 
Sbjct: 1026 VKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGF 1085

Query: 328  KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
                  Y  +I  F    K+ EA    D+M   G+  ++
Sbjct: 1086 SVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADK 1124



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 1/230 (0%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
            G + +  T++ +++ L  +     A  L+        +     + ++   Y +      A
Sbjct: 909  GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 968

Query: 105  MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              +  +M   G +PT  ++  ++        L+   +    M   GI P   + N L+K 
Sbjct: 969  QEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQ 1028

Query: 165  LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             C  +  + AA  I+++M +RG  PD  TY  L+ G C    + EA  LF+EM+ K  S 
Sbjct: 1029 YCIRN-NLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSV 1087

Query: 225  TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            +V TY+ LI G  + K   EA  +F++MR  G+  +   +    D   KG
Sbjct: 1088 SVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKG 1137


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 231/428 (53%), Gaps = 21/428 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRG--YGRV 98
           G   D  +++ ++  L  A ++   ++L++ + +  C    +T +  +S +CR   + RV
Sbjct: 222 GCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERV 281

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H       V  +M E GC P  + Y T++  + +E  L++A      M   G++P V   
Sbjct: 282 HE------VLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCY 335

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N L+K LC ++   +   ++  EM ++ C  D  T+  L++  C+ G +    EL ++M 
Sbjct: 336 NTLLKGLC-SAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 394

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            + C P V+TYT++ING C+   ++EA+ L + M + G +PN  +Y+ ++ GLC      
Sbjct: 395 ERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWV 454

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A +L+  MI +    N +T++TL+N LCK+G +++A+E+L +M + G  PD   Y  +I
Sbjct: 455 DAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 514

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
                 GK  EA   L+ MV  G++PN +       I++++   L +    N+  Q++ +
Sbjct: 515 DGLGKAGKTDEALELLNVMVNKGMSPNTI-------IYSSIASALSREGRINKVIQMFDN 567

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +++ +I  D++ Y+++I+  CK+G+  ++   +  +V  GC+P+E T++ ++  L     
Sbjct: 568 IQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGF 627

Query: 458 MRQAAELL 465
           +++A E+L
Sbjct: 628 VKEAQEML 635



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 227/496 (45%), Gaps = 39/496 (7%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   V++ + A   +  AL + D        G       + +++        FR A  +L
Sbjct: 124 TYFPVVRALCARGRIADALAVLDEMPRR---GCAPIPPMYHVILEAACRGGGFRSAVRVL 180

Query: 74  DRVNKEKC--DITE-DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           + ++   C  D+   ++ L+     G V    +A+ +   +  FGCEP   SY  VL  L
Sbjct: 181 EDLHARGCALDVGNCNLVLNAICDQGSVD---EALHLLRDLPSFGCEPDVVSYNAVLKGL 237

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
               +          M  +   P + + N LI  LC+N G  +   ++  +M   GCTPD
Sbjct: 238 CMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRN-GLFERVHEVLAQMVEHGCTPD 296

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
              Y T+I+G+C+ G +  A E+   M +    P VV Y +L+ GLC ++  EE   L  
Sbjct: 297 IRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLA 356

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EM  K    +  T++ L+D  C+ G   + +ELL+ M+ +   P+++TY+T++NG CKEG
Sbjct: 357 EMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEG 416

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            + EAV +L  M   G KP+   Y  ++   C   ++ +A + + +M+  G   N +T++
Sbjct: 417 LIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFN 476

Query: 371 LHIRI----------------------------HNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             I                              ++TV+ GL K    + A ++   M N+
Sbjct: 477 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNK 536

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +S +++ YSS+ +   ++G I+K  ++ D +       D   ++AV+++L  R +  +A
Sbjct: 537 GMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERA 596

Query: 462 AELLLLELMNKCVEAE 477
            E L   + + CV  E
Sbjct: 597 IEFLAYMVSSGCVPNE 612



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 173/357 (48%), Gaps = 9/357 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   +Y  V+  L    ++  A      M   G  P     +V+++A C+  G   +A +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGG-FRSAVR 178

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  ++  RGC  D      ++N +C  G + EA  L +++ +  C P VV+Y +++ GLC
Sbjct: 179 VLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLC 238

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
            +K       L EEM      PN+ T+++L+  LC+ G   +  E+L  M+     P+I 
Sbjct: 239 MAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIR 298

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            Y+T+++G+CKEG L+ A EIL+RM   GLKP+   Y  ++   C   +++E    L EM
Sbjct: 299 MYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 358

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITC 416
                  + +T+       N +V   C+    +R  ++   M  R    D +TY+++I  
Sbjct: 359 FDKDCPLDDVTF-------NILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVING 411

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           FCK+G I ++  ++  +   GC P+  +++ V+  L    +   A +L+   +   C
Sbjct: 412 FCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGC 468



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 160/320 (50%), Gaps = 7/320 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G + +   ++ ++  L SA ++   E+LL  +  + C   D+T +I +      G V R 
Sbjct: 327 GLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDR- 385

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              + + ++M E GC P   +Y TV+    +E  +  A    + M   G +P   S  ++
Sbjct: 386 --VIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIV 443

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K LC     +DA   +  +M  +GC  +  T+ TLIN LC+ G + +A EL K+M    
Sbjct: 444 LKGLCSAERWVDAE-DLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 502

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP +++Y+++I+GL ++   +EA+ L   M +KG+ PN   YSS+   L + G  ++ +
Sbjct: 503 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI 562

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   +     R + V Y+ +++ LCK G+ + A+E L  M   G  P+   Y  +I   
Sbjct: 563 QMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL 622

Query: 342 CDIGKYQEAANFLDEMVLGG 361
              G  +EA   L E+   G
Sbjct: 623 ASEGFVKEAQEMLTELCSKG 642



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 11/238 (4%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +++ G C++  +E A RL   +    V PN +TY  ++  LC  G  + A+ +L  M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   P    Y  +L   C+ G  + AV +L+ +  +G   D G    +++  CD G   
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDS 407
           EA + L ++   G  P+ +++       N V++GLC        Q  +  M   +   + 
Sbjct: 210 EALHLLRDLPSFGCEPDVVSY-------NAVLKGLCMAKRWGCVQELMEEMVRMACPPNI 262

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +T+++LI+  C+ G   +   ++ ++V  GC PD   ++ ++  +     +  A E+L
Sbjct: 263 VTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEIL 320


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 233/474 (49%), Gaps = 41/474 (8%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRP 101
           +G   D  T +++++ L + N  R  E L       +     DI  + ++ +G    HR 
Sbjct: 125 SGISPDCCTLNILLNCLCNVN--RVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRI 182

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE------IGIQPCV 155
             A  +F +M++ GC P   +Y T++  L     + +A + ++ M        I  +P V
Sbjct: 183 SKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVV 242

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            S +++I ALCK+    D A  +F EM  +G TP   +Y +LI+G C  GK  EAK LF 
Sbjct: 243 ISYSIIIDALCKDRRE-DEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFN 301

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM  +   P VVT+  LI+ LC+   V EA  L E M  +G+ PN+ TY+SL++G C  G
Sbjct: 302 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVG 361

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
             + A EL   M SK   P+++ Y+ L+NG CK  K++EA+++ + M   G +PD   YG
Sbjct: 362 DLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYG 421

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS------------------------- 370
            +++     GK  +A      M + GI  +   +                          
Sbjct: 422 ALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSY 481

Query: 371 ---LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
              L I   N ++ GLCK      A++++  +    +  D +TY+ +I  FC+ G + K+
Sbjct: 482 NIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKA 541

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
             +  ++  +GC PD+ T++ ++   ++ +K+ +  ELL + ++ + V  +V+I
Sbjct: 542 NILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHM-MVQRDVSLDVNI 594



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 191/370 (51%), Gaps = 15/370 (4%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A + F  M      P   S+  +L+ L +       F  Y  MR  GI P   +LN+L+
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC N   +     +   +  RG  PD  TY TLI GLC   +I +A  LF  M+   C
Sbjct: 139 NCLC-NVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGC 197

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK------GVEPNVFTYSSLMDGLCKGGC 276
           +P  +TY +L+ GLC++ ++  A++L +EM +         +P V +YS ++D LCK   
Sbjct: 198 TPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRR 257

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A +L + M  +   P +++Y++L++G C  GK +EA  + + M  QG++P+   +  
Sbjct: 258 EDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNV 317

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395
           +I   C  GK  EA + L+ M+  GI PN LT+       N++++G C   D N A +++
Sbjct: 318 LIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTY-------NSLIEGFCLVGDLNSARELF 370

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           +SM ++    D + Y+ LI  +CK   + ++ ++ + ++  G  PD  T+ A++T L+  
Sbjct: 371 VSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQG 430

Query: 456 RKMRQAAELL 465
            K+  A +L 
Sbjct: 431 GKVGDAKKLF 440



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 140/273 (51%), Gaps = 16/273 (5%)

Query: 202 CRLGKIY--EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           C+ G I   +A + F  M     +P + ++T L++GL + K   +   L+ +MR  G+ P
Sbjct: 70  CKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +  T + L++ LC      + + ++  ++ + + P+IVTY+TL+ GLC E ++ +A  + 
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLF 189

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV----LGGIT--PNRLTWSLHI 373
            RM+  G  P+A  YG ++   C  G    A     EM+    L GI   P  +++S+  
Sbjct: 190 TRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSI-- 247

Query: 374 RIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
                ++  LCK    + A  ++  M+ + ++   ++Y+SLI  FC  G   ++ R+ +E
Sbjct: 248 -----IIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNE 302

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +V  G  P+  T++ ++  L    K+ +A +LL
Sbjct: 303 MVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLL 335


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 237/486 (48%), Gaps = 47/486 (9%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++R++ D   AL  F  A  ++   +RHD   +  M+  L      + A  +L  + 
Sbjct: 167 VCAVLRSQDDERIALDFFYWADRQWR--YRHDAIVYYTMLDILSKTRLCQGARRILRLMT 224

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +   + + + F  +   Y R     +A+R+   M++ G EP      T + +LV+ N+L+
Sbjct: 225 RRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLE 284

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A RF   M+  GI+P + S N LIK  C +   +D A ++  EMP +GC PD  +Y T+
Sbjct: 285 KALRFLERMKVAGIEPDIVSYNCLIKGYC-DVHRIDDALELIAEMPFKGCPPDKVSYYTV 343

Query: 198 INGLCRLGKIYEAKEL------------------------------------FKEMETKA 221
           +  LC+  K+ E K L                                     +E E K 
Sbjct: 344 MAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKG 403

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
                V Y+++++  C++K++++A  L  +M SKG  P+V TY++++DG C+ G   +A 
Sbjct: 404 FHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAK 463

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++LQ M     +PN VTY+ LLNGLC  GK  EA E+++  +     P+A  Y  ++   
Sbjct: 464 KMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGL 523

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRN 400
              GK  EA +   EM+  G  PN +         N ++Q LC+       + YL    +
Sbjct: 524 RREGKLSEACDLTREMIEKGFLPNPVDI-------NLLIQSLCRNQNVVGAKKYLEECLH 576

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  +V+ + ++S+I  FC+ GD+  +  +++++ L    PD  T++ +  AL  + ++ +
Sbjct: 577 KGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDE 636

Query: 461 AAELLL 466
           A+EL++
Sbjct: 637 ASELIV 642



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 163/375 (43%), Gaps = 46/375 (12%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+    + +E G       Y  V+    +   +  A      M   G  P V +   +I
Sbjct: 391 DALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAII 450

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+  G +D A K+ ++M   GC P++ TY  L+NGLC  GK  EA+E+    E    
Sbjct: 451 DGFCR-VGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWW 509

Query: 223 SPTVVTYTSLING-----------------------------------LCQSKSVEEAMR 247
           +P  +TY+++++G                                   LC++++V  A +
Sbjct: 510 TPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKK 569

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
             EE   KG   NV  ++S++ G C+ G    A+ +L+ M      P+ +TY+TL + L 
Sbjct: 570 YLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALG 629

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K+ +L EA E++ +M  +G+ P    Y  +I  FC  G+  +    L++M+     P + 
Sbjct: 630 KKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKLLEKMI--ARQPFKT 687

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKS 426
                  ++N V++ LC        +  L    R+ S +D+ T   LI  +   G+   +
Sbjct: 688 -------VYNQVIEKLCYFGNREEAEKLLGKVLRTASKLDAKTCHILIESYLIDGNALSA 740

Query: 427 ARIVDELVLDGCLPD 441
            ++  ++     +PD
Sbjct: 741 YKVACQMFRRNLIPD 755



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 131/356 (36%), Gaps = 67/356 (18%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           Y+ G   D  T++ +I       +   A+ +L ++ K  C      +  +  G     + 
Sbjct: 435 YSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKS 494

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           L+A  + +  +E    P   +Y  V+  L  E +L  A    R M E G  P    +N+L
Sbjct: 495 LEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLL 554

Query: 162 IKALCKNS----------------------------------GTMDAAFKIFREMPNRGC 187
           I++LC+N                                   G +DAA  +  +M     
Sbjct: 555 IQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNK 614

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL--------------- 232
            PD+ TY TL + L +  ++ EA EL  +M  K   PT VTY ++               
Sbjct: 615 HPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMK 674

Query: 233 ------------------INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
                             I  LC   + EEA +L  ++     + +  T   L++     
Sbjct: 675 LLEKMIARQPFKTVYNQVIEKLCYFGNREEAEKLLGKVLRTASKLDAKTCHILIESYLID 734

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           G +  A ++   M  +   P++     +   L  +G   EA +++ R   +G++ +
Sbjct: 735 GNALSAYKVACQMFRRNLIPDLKLCEKVTKKLVLDGMPAEADDLMLRFVERGIQTE 790



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 16/235 (6%)

Query: 9   WS-TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           W+   IT + V+  +R E  +++A    D        GF  +    +L+I  L       
Sbjct: 509 WTPNAITYSAVMHGLRREGKLSEAC---DLTREMIEKGFLPNPVDINLLIQSLCRNQNVV 565

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
            A+  L+    + C +    F S+  G+ ++     A+ + + M      P   +Y T+ 
Sbjct: 566 GAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLF 625

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
             L ++++L  A      M   GI P   +   +I   C+  G +D   K+  +M  R  
Sbjct: 626 DALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQ-WGRVDDMMKLLEKMIAR-- 682

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELF-------KEMETKACSPTVVTYTSLING 235
            P    Y  +I  LC  G   EA++L         +++ K C   + +Y  LI+G
Sbjct: 683 QPFKTVYNQVIEKLCYFGNREEAEKLLGKVLRTASKLDAKTCHILIESY--LIDG 735


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 216/418 (51%), Gaps = 12/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  +++ M++      Q   A  L+  +  E    T +  +    G GR     +A+ V 
Sbjct: 119 DVMSYNAMVAGYCVTGQLDNARRLVAAMPMEPDTYTYNTLIRGLCGRGRTD---NALAVL 175

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D M   GC P   +Y  +L    + +  K A +    MR+ G  P + + NV++  +C+ 
Sbjct: 176 DDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQE 235

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D A +  + +P+ GC P++ +Y  ++ GLC   +  +A++L  EM  K   P VVT
Sbjct: 236 -GRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVT 294

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  LI+ LC+   VE AM + +++   G  PN  +Y+ ++   CK     +AM  +++M+
Sbjct: 295 FNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMV 354

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S    P+IV+Y+TLL  LC+ G++  AVE+L ++K +G  P    Y  +I      GK +
Sbjct: 355 SSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTE 414

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           EA   L+EMV  G+ P+ +T+S       T+  GLC+      A + +  +++  I  ++
Sbjct: 415 EALELLNEMVTKGLQPDIITYS-------TISSGLCREGRIEEAIKAFCKVQDMGIRPNT 467

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + Y++++   CK+   H +  +   +V +GC+P+E T++ ++  L     +++A E++
Sbjct: 468 VLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMM 525



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 188/391 (48%), Gaps = 33/391 (8%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           CEP   SY  ++A      QL  A R    M    ++P   + N LI+ LC   G  D A
Sbjct: 116 CEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRGLC-GRGRTDNA 171

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             +  +M  RGC PD  TY  L+   C+     +A +L  EM  K C+P +VTY  ++NG
Sbjct: 172 LAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNG 231

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           +CQ   V++AM   + + S G EPN  +Y+ ++ GLC       A +L+  M  K   PN
Sbjct: 232 ICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPN 291

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +VT++ L++ LC+ G ++ A+EILD++   G  P++  Y  I+  FC   K   A  F++
Sbjct: 292 VVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVE 351

Query: 356 EMVLGGITPNRLTWS------------------LH----------IRIHNTVVQGLCKTD 387
            MV  G  P+ ++++                  LH          +  +NTV+ GL K  
Sbjct: 352 LMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAG 411

Query: 388 PNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
               A ++   M  + +  D +TYS++ +  C++G I ++ +   ++   G  P+   ++
Sbjct: 412 KTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYN 471

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           A++  L  RR    A +L    + N C+  E
Sbjct: 472 AILLGLCKRRATHSAIDLFTYMVSNGCMPNE 502



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 179/386 (46%), Gaps = 47/386 (12%)

Query: 29  NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITE 85
           + AL + D        G   D  T+++++      + ++ A  LLD +  + C    +T 
Sbjct: 169 DNALAVLDDM---LRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTY 225

Query: 86  DIFLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           ++ ++ IC+  GRV    DAM     +  +GCEP   SY  VL  L    + + A +   
Sbjct: 226 NVVVNGICQ-EGRVD---DAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMA 281

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS------------- 191
            M   G  P V + N+LI  LC+  G ++ A +I  ++P  GCTP+S             
Sbjct: 282 EMSRKGRPPNVVTFNMLISFLCRR-GLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQ 340

Query: 192 ----------------------YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
                                  +Y TL+  LCR G++  A EL  +++ K C+P +++Y
Sbjct: 341 KKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISY 400

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            ++I+GL ++   EEA+ L  EM +KG++P++ TYS++  GLC+ G   +A++    +  
Sbjct: 401 NTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQD 460

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              RPN V Y+ +L GLCK      A+++   M   G  P+   Y  +I      G  +E
Sbjct: 461 MGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKE 520

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRI 375
           A   + E+   G+    L     IR+
Sbjct: 521 AREMMAELCSRGVVSKTLVNKGAIRL 546



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 183/376 (48%), Gaps = 33/376 (8%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS--LN 159
           + A+  F     +   PTPK+          + +L LA+        +  +   ++  L 
Sbjct: 12  MSALPTFASSHPYPSLPTPKT-------AAPKPRLNLAYAGAVAPNAVPHRSAASNDRLR 64

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY-TYGTLINGLCRLGKIYEAKELFKEME 218
           VL++      G ++ A ++   M   G  P +      LI  LC  G+  EA+ +     
Sbjct: 65  VLVR-----RGDLEEAIRLVESM--AGLEPSAAGPCAALIKKLCASGRTAEARRVLA--- 114

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
             +C P V++Y +++ G C +  ++ A RL   M    +EP+ +TY++L+ GLC  G + 
Sbjct: 115 --SCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRGLCGRGRTD 169

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A+ +L  M+ +   P++VTY+ LL   CK    ++AV++LD M+ +G  PD   Y  ++
Sbjct: 170 NALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVV 229

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           +  C  G+  +A  FL  +   G  PN +++       N V++GLC  +    A ++   
Sbjct: 230 NGICQEGRVDDAMEFLKSLPSYGCEPNTVSY-------NIVLKGLCTAERWEDAEKLMAE 282

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M  +    + +T++ LI+  C++G +  +  I+D++   GC P+  +++ ++ A   ++K
Sbjct: 283 MSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKK 342

Query: 458 MRQAAELLLLELMNKC 473
           M +A   + L + + C
Sbjct: 343 MDRAMAFVELMVSSGC 358


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 224/442 (50%), Gaps = 11/442 (2%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VLQ +   +D +KAL  F+ A      G+ H   ++  M+  L        A + L  + 
Sbjct: 82  VLQTLGFLRDTSKALQFFNWAQEM---GYTHTEQSYFSMLEILGRNRHLNTARNFLFSIE 138

Query: 78  KEKCDITE---DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           K    I +     F S+ R + R     ++++VF  MK  G  P+  ++ ++L IL++  
Sbjct: 139 KRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRG 198

Query: 135 QLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           +  +A + Y  M    G+ P   + N+LI+  C N G +D  F+IF ++   GC PD  T
Sbjct: 199 RTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMN-GMVDDGFRIFNDLSRFGCEPDVVT 257

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKAC--SPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y TL++GLCR GK+  A  + K M  K+   +P VVTYT+LI G C  + +E+A+ +FEE
Sbjct: 258 YNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEE 317

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-RHRPNIVTYSTLLNGLCKEG 310
           M ++G++ N  TY++L+ GLC+     +  ++L+         P+  T++TL++  C  G
Sbjct: 318 MVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAG 377

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L +A+++ +RM    ++PD+  Y  ++   C  G Y++A + LD+++   I  +     
Sbjct: 378 NLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCK 437

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
             +  +N + + LC+T   +  +       R  + D  +Y +LI   CK+G       ++
Sbjct: 438 PLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELL 497

Query: 431 DELVLDGCLPDEGTWSAVMTAL 452
             ++     PD  T+ +++  L
Sbjct: 498 VLMLRKDFXPDFETYESLINGL 519



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 158/334 (47%), Gaps = 26/334 (7%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D  T++ ++  L  A +   A +++  + K+  D+  ++  + ++ RGY        A+ 
Sbjct: 254 DVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALA 313

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI--------GIQPCVASL 158
           VF++M   G +    +Y T++  L E        R +  +++I           P   + 
Sbjct: 314 VFEEMVNQGLKANNITYNTLIKGLCEA-------RKFEKIKDILEGTAGDGTFSPDTCTF 366

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF-KEM 217
           N L+   C ++G +D A K+F  M      PDS TY  L+  LC+ G   +A++L  K +
Sbjct: 367 NTLMHCHC-HAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLL 425

Query: 218 ETK------ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           E K       C P V  Y  +   LC++   ++A + F ++  +G + +  +Y +L+ G 
Sbjct: 426 ERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQ-DPPSYKTLIMGH 484

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
           CK G      ELL +M+ K   P+  TY +L+NGL    K   A++ L++M     +P++
Sbjct: 485 CKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNS 544

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
             +  I++   + G+  E+A+ +  M+   I  N
Sbjct: 545 STFHSILAKLLEQGRASESASLIQLMLDKNIRQN 578



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 181/404 (44%), Gaps = 49/404 (12%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           MG K++      +T   +++   A++++ KAL +F+    +   G + +N T++ +I  L
Sbjct: 281 MGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQ---GLKANNITYNTLIKGL 337

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEP 118
             A +F   +D+L+    +    + D   F ++   +       DA++VF++M E   +P
Sbjct: 338 CEARKFEKIKDILEGTAGDGT-FSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQP 396

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHM--REI-----GIQPCVASLNVLIKALCKNSGT 171
              +Y  ++  L +    + A      +  R+I     G +P VA+ N + K LC+ +G 
Sbjct: 397 DSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCE-TGK 455

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A K FR++  RG T D  +Y TLI G C+ G      EL   M  K   P   TY S
Sbjct: 456 TKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYES 514

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LINGL        A++  E+M      PN  T+ S++  L + G +S++  L+Q+M+ K 
Sbjct: 515 LINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRASESASLIQLMLDKN 574

Query: 292 HRPNIVTYST--------------------LLNGLCKEGKLQEAVEIL--DRMKLQGLK- 328
            R N+ ++ST                    LL G     K++E +  L   R  +QG K 
Sbjct: 575 IRQNL-SFSTGCVRLLFGAGMNDKAFQLVHLLYGKGYSVKMEELIRYLCHCRKVIQGSKL 633

Query: 329 ----------PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
                      D  L   +I   C+I K  EA +   ++V  G+
Sbjct: 634 LLFSLESHQFVDMDLCNTVIFQLCEINKLSEAFSLYYKLVEMGV 677


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 189/368 (51%), Gaps = 9/368 (2%)

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           ++ M   GC P   +Y  +L  L +  + + A   +R M   G  P V S ++LI  LC+
Sbjct: 40  YNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCR 99

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
               +D A ++  EM + G  P+  TYG+L++GLC++GK+ EA +LF  M  + C P  V
Sbjct: 100 GQ-KVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGV 158

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            Y  LI+G  +   + EA RLFEEM  KG  P VFTY+SL+ G  + G   +   L + M
Sbjct: 159 VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDM 218

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           + +   PNI T++ LL+G CK G + EA  +   M+  G  PD   Y  ++   C  GK 
Sbjct: 219 LRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKP 278

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            EA   L EM+  G+ P+ +++       N ++ G  K+   + A +++  +    +  D
Sbjct: 279 HEAQRLLREMIRSGVGPDIVSY-------NILIDGYSKSGALDHAIKLFYEIPKSGLEPD 331

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           + +YS++I C C+ G +  +  +  +++ +G  PD      ++  L    ++ ++ EL  
Sbjct: 332 AFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQ 391

Query: 467 LELMNKCV 474
             +  +CV
Sbjct: 392 AMVKFECV 399



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 166/310 (53%), Gaps = 9/310 (2%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           S N L++ L K SG  D  +  + +M   GC P++YTYG L+  LC+  +  EA+ +F+ 
Sbjct: 19  SYNYLLEVLAK-SGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  + CSP V +Y+ LI GLC+ + V+EA  L  EM   G +PNV TY SL+ GLCK G 
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A++L   M+ +   P+ V Y+ L++G  K+G + EA  + + M  +G  P    Y  
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395
           ++S F   G++    +   +M+  G  PN  T+       N ++ G CK  D   A +++
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF-------NNLLDGFCKMGDMVEAHRLF 250

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           L MR+     D ++Y++L+   C KG  H++ R++ E++  G  PD  +++ ++      
Sbjct: 251 LEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKS 310

Query: 456 RKMRQAAELL 465
             +  A +L 
Sbjct: 311 GALDHAIKLF 320



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 197/416 (47%), Gaps = 16/416 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  ++  L  A +F  A  +   +  + C      +  +  G  R  +  +A  + ++M
Sbjct: 54  TYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM 113

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G +P   +Y ++L+ L +  +LK A   +  M   G  P     NVLI    K  G 
Sbjct: 114 IDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKK-GD 172

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           M  A+++F EM  +GC P  +TY +L++G  R G+    + LFK+M  + C P + T+ +
Sbjct: 173 MGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNN 232

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++G C+   + EA RLF EMRS G  P+V +Y++LM G+C  G   +A  LL+ MI   
Sbjct: 233 LLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSG 292

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+IV+Y+ L++G  K G L  A+++   +   GL+PDA  Y  II C C  GK   A 
Sbjct: 293 VGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAF 352

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDS 407
               +M+  G  P+         +   +V GLC+    T+    FQ  +      +  + 
Sbjct: 353 VVFKDMIANGSAPD-------AAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPE- 404

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             Y+ L+   CK         I  EL   G  PD      ++  L  R   ++AAE
Sbjct: 405 --YNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLR-RSDDKEAAE 457



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 121/241 (50%), Gaps = 8/241 (3%)

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           ++Y  L+  L +S   +     + +M   G  PN +TY  L+  LC+     +A  + + 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M ++   PN+ +YS L+ GLC+  K+ EA E+L+ M   G +P+   YG ++S  C +GK
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
            +EA +    MV  G  P+ +       ++N ++ G  K  D   A++++  M  +    
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGV-------VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP 190

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              TY+SL++ F +KG+  +   +  +++  GC+P+  T++ ++        M +A  L 
Sbjct: 191 TVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLF 250

Query: 466 L 466
           L
Sbjct: 251 L 251



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 8/216 (3%)

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
              +Y+ L++ L K G           M+     PN  TY  LL  LC+  + +EA  + 
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
             M  QG  P+   Y  +I+  C   K  EAA  L+EM+ GG  PN +T+        ++
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTY-------GSL 128

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           + GLCK      A  ++  M  R    D + Y+ LI  F KKGD+ ++ R+ +E++  GC
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           +P   T++++++    + +  +   L    L   CV
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV 224


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 209/436 (47%), Gaps = 30/436 (6%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
            + D  T+  ++  L    +F    +++D + + +   +E    S+  G  +  +  +A+
Sbjct: 293 LKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEAL 352

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            +  ++ EFG  P    Y  ++  L +      A   +  M +IG+ P   + ++LI   
Sbjct: 353 NLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMF 412

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C+  G +D A     EM + G  P  Y Y +LING C+ G I  A+ L  EM  K   PT
Sbjct: 413 CRR-GKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPT 471

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VVTYTSL+ G C    + +A+RL+ EM  KG+ P+++T+++L+ GL + G    A++L  
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFT 531

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M     +PN VTY+ ++ G C+EG + +A E L+ M  +G+ PD   Y  +I   C  G
Sbjct: 532 EMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTG 591

Query: 346 KYQEAANFLDEMVLGGITPNRLTWS----------------------------LHIRIHN 377
           +  EA  F+D +  G    N + ++                            L +  + 
Sbjct: 592 QASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYG 651

Query: 378 TVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++ G  K    + F   L  M +R +  D + Y+S+I    K GD  ++  I D ++ +
Sbjct: 652 VLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINE 711

Query: 437 GCLPDEGTWSAVMTAL 452
           GC+P+E T++AV+  L
Sbjct: 712 GCVPNEVTYTAVINGL 727



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 214/420 (50%), Gaps = 7/420 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G +     ++ +I+          AE L+  +  +K + T   + S+  GY    +   A
Sbjct: 432 GLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKA 491

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R++ +M   G  P+  ++ T+L+ L     ++ A + +  M E  ++P   + NV+I+ 
Sbjct: 492 LRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEG 551

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+  G M  AF+   EM  +G  PD+Y+Y  LI+GLC  G+  EAK     +    C  
Sbjct: 552 YCE-EGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCEL 610

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             + YT L++G C+   +EEA+ + ++M  +GV+ ++  Y  L+DG  K       + LL
Sbjct: 611 NEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLL 670

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +  +P+ V Y+++++   K G  +EA  I D M  +G  P+   Y  +I+  C  
Sbjct: 671 KEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKA 730

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
           G   EA     +M  G   PN++T+   + I   + +G+   D  +A +++ ++  + + 
Sbjct: 731 GFVNEAEILCSKMRPGNSVPNQVTYGCFLDI---LTKGV--GDMKKAVELHNAIL-KGLL 784

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            ++ TY+ LI  FC++G + +++ ++  ++ DG  PD  T++ +++ L  R  +++A EL
Sbjct: 785 ANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIEL 844



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 213/467 (45%), Gaps = 81/467 (17%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAE--------------DLLDRVNK--EKCDITEDI- 87
           GF H  ++F ++I  LV AN F PA               ++ D +    EKC ++    
Sbjct: 99  GFDHSTASFCILIHALVQANLFWPASSLLQTLLLRALKPSEVFDALFSCYEKCKLSSSSS 158

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  + + Y R  R LD + VF  M                                  M 
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMM----------------------------------MT 184

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           ++ + P V +L+ L+  L K       A ++F +M N G  PD Y Y  +I  LC L  +
Sbjct: 185 KVSLLPEVRTLSALLHGLVKFR-HFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDL 243

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             AKE+  +ME   C   +V Y  LI+GLC+ + V EA+ + +++  K ++P+V TY +L
Sbjct: 244 SRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTL 303

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + GLCK       +E++  M+  R  P+    S+L+ GL K GK++EA+ ++ R+   G+
Sbjct: 304 VCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGV 363

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI------------ 375
            P+  +Y  +I   C    + EA    D M   G+ PN +T+S+ I +            
Sbjct: 364 SPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALS 423

Query: 376 ----------------HNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
                           +N+++ G CK  D + A  +   M N+ +    +TY+SL+  +C
Sbjct: 424 FLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYC 483

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            KG I+K+ R+  E+   G +P   T++ +++ L+    +R A +L 
Sbjct: 484 SKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLF 530



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 176/368 (47%), Gaps = 11/368 (2%)

Query: 6   MFKWSTK---ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           M +W+ K   +T   +++    E +++KA   F+        G   D  ++  +I  L  
Sbjct: 533 MAEWNVKPNRVTYNVMIEGYCEEGNMSKA---FEFLNEMIEKGIVPDTYSYRPLIHGLCL 589

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
             Q   A+  +D ++K  C++ E  +  +  G+ R  +  +A+ V   M   G +     
Sbjct: 590 TGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVC 649

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y  ++   ++    K+     + M + G++P       +I A  K +G    AF I+  M
Sbjct: 650 YGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSK-TGDFKEAFGIWDLM 708

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
            N GC P+  TY  +INGLC+ G + EA+ L  +M      P  VTY   ++ L  +K V
Sbjct: 709 INEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDIL--TKGV 766

Query: 243 EEAMRLFEEMRS--KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
            +  +  E   +  KG+  N  TY+ L+ G C+ G   +A EL+  MI     P+ +TY+
Sbjct: 767 GDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYT 826

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           T+++ LC+   +++A+E+ + M  +G++PD   Y  +I   C  G+  +A    +EM+  
Sbjct: 827 TMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886

Query: 361 GITPNRLT 368
           G+ PN  T
Sbjct: 887 GLKPNTET 894



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 135/281 (48%), Gaps = 11/281 (3%)

Query: 106 RVF-DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +VF D + +  CE     Y  +L     E +L+ A    + M   G+   +    VLI  
Sbjct: 597 KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDG 656

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K+         + +EM +RG  PD   Y ++I+   + G   EA  ++  M  + C P
Sbjct: 657 SLKHK-DRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVP 715

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG-GCSSQAMEL 283
             VTYT++INGLC++  V EA  L  +MR     PN  TY   +D L KG G   +A+E 
Sbjct: 716 NEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVE- 774

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L   I K    N  TY+ L+ G C++G+++EA E++ RM   G+ PD   Y  +IS  C 
Sbjct: 775 LHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCR 834

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
               ++A    + M   GI P+R+ +       NT++ G C
Sbjct: 835 RNDVKKAIELWNSMTEKGIRPDRVAY-------NTLIHGCC 868



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 1/202 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  ++D M   GC P   +Y  V+  L +   +  A      MR     P   +    +
Sbjct: 700 EAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFL 759

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K  G M  A ++   +  +G   ++ TY  LI G CR G++ EA EL   M     
Sbjct: 760 DILTKGVGDMKKAVELHNAIL-KGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGV 818

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP  +TYT++I+ LC+   V++A+ L+  M  KG+ P+   Y++L+ G C  G   +A E
Sbjct: 819 SPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATE 878

Query: 283 LLQMMISKRHRPNIVTYSTLLN 304
           L   M+ +  +PN  T  T ++
Sbjct: 879 LRNEMLRQGLKPNTETSETTIS 900



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 12/219 (5%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKCDI 83
           D  +A  I+D    E   G   +  T++ +I+ L  A     AE L  ++   N     +
Sbjct: 697 DFKEAFGIWDLMINE---GCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQV 753

Query: 84  TEDIFLSI-CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           T   FL I  +G G + + ++      K    G      +Y  ++     + +++ A   
Sbjct: 754 TYGCFLDILTKGVGDMKKAVELHNAILK----GLLANTATYNMLIRGFCRQGRMEEASEL 809

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
              M   G+ P   +   +I  LC+ +  +  A +++  M  +G  PD   Y TLI+G C
Sbjct: 810 ITRMIGDGVSPDCITYTTMISELCRRN-DVKKAIELWNSMTEKGIRPDRVAYNTLIHGCC 868

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
             G++ +A EL  EM  +   P   T  + I+    SKS
Sbjct: 869 VAGEMGKATELRNEMLRQGLKPNTETSETTISNDSSSKS 907


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/420 (30%), Positives = 212/420 (50%), Gaps = 17/420 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ M++    A     A  ++D V       T +  +      G V   LDA+ VFD M
Sbjct: 130 TYNTMVNGYCRAGNIDAARRMIDSVPFAPDTFTYNPLIRALCVRGCV---LDALAVFDDM 186

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P+  +Y  +L    +E+  K A      MR  G +P + + NVLI A+C + G 
Sbjct: 187 LHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMC-SQGD 245

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A K+   +P+ GC PD+ TY  ++  LC   +  EA +L  +M +  C+P  VT+ +
Sbjct: 246 VGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNA 305

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM----ELLQMM 287
           +I  LCQ   V  A ++  +M   G  P++ TYSS+MDGLCK     +A+    ELL  M
Sbjct: 306 VITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEM 365

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF-CDIGK 346
           +SK   P+ VT++T++  LC++G    A++++D M   G  PD   Y  I+  F C   K
Sbjct: 366 VSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCK 425

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
            +EA + L+ MV  G+ P+  T+        ++  GL + D   RA  ++  ++   +S 
Sbjct: 426 TEEALDLLNLMVSNGLCPDTTTY-------KSLAFGLSREDEMERAIGMFRRVQAMGLSP 478

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D + Y++++   CKK     +      +V +GC+PDE T+  ++  +     + +A ELL
Sbjct: 479 DKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELL 538



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 191/379 (50%), Gaps = 47/379 (12%)

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN--------------------- 168
           LV+  +L  A R    +   G  P V   N+LIK LC +                     
Sbjct: 71  LVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGPSATIIT 130

Query: 169 ----------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
                     +G +DAA ++   +P     PD++TY  LI  LC  G + +A  +F +M 
Sbjct: 131 YNTMVNGYCRAGNIDAARRMIDSVPF---APDTFTYNPLIRALCVRGCVLDALAVFDDML 187

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            + CSP+VVTY+ L++  C+    ++A+ L +EMRSKG EP++ TY+ L++ +C  G   
Sbjct: 188 HRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVG 247

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A+++L  + S   +P+ VTY+ +L  LC   + +EA ++L +M      PD   +  +I
Sbjct: 248 EALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVI 307

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAF----Q 393
           +  C  G    A   L +M   G TP+ +T+S       +++ GLCK    + A     +
Sbjct: 308 TSLCQKGFVGRATKVLAQMSEHGCTPDIITYS-------SIMDGLCKERRVDEAIKLLKE 360

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +   M +++   D +T++++IT  C+KG   ++ ++VDE+   GC+PD  T++ ++    
Sbjct: 361 LLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFL 420

Query: 454 DRR-KMRQAAELLLLELMN 471
            +  K  +A +LL L + N
Sbjct: 421 CKSCKTEEALDLLNLMVSN 439



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 178/347 (51%), Gaps = 15/347 (4%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDI 87
           AL +FD        G      T+S+++      + ++ A  LLD +  + C+   +T ++
Sbjct: 179 ALAVFDDM---LHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNV 235

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
            ++     G V    +A++V + +  +GC+P   +Y  VL  L    + + A +    M 
Sbjct: 236 LINAMCSQGDVG---EALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMF 292

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
                P   + N +I +LC+  G +  A K+  +M   GCTPD  TY ++++GLC+  ++
Sbjct: 293 SNDCAPDEVTFNAVITSLCQK-GFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRV 351

Query: 208 YEA----KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            EA    KEL  EM +K C P  VT+ ++I  LCQ    + A+++ +EM   G  P++ T
Sbjct: 352 DEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITT 411

Query: 264 YSSLMDG-LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           Y+ ++DG LCK   + +A++LL +M+S    P+  TY +L  GL +E +++ A+ +  R+
Sbjct: 412 YNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRV 471

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           +  GL PD  LY  I+   C   +   A +F   MV  G  P+  T+
Sbjct: 472 QAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTY 518



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 205/432 (47%), Gaps = 24/432 (5%)

Query: 54  SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
           +++I KL +  +   AE +++ +      IT   + ++  GY R      A R+ D +  
Sbjct: 100 NILIKKLCADGRVADAERVVEALGPSATIIT---YNTMVNGYCRAGNIDAARRMIDSVP- 155

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
           F   P   +Y  ++  L     +  A   +  M   G  P V + ++L+ A CK SG   
Sbjct: 156 FA--PDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQ 213

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
           A   +  EM ++GC PD  TY  LIN +C  G + EA ++   + +  C P  VTYT ++
Sbjct: 214 AVV-LLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVL 272

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
             LC S+  EEA +L  +M S    P+  T+++++  LC+ G   +A ++L  M      
Sbjct: 273 KSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCT 332

Query: 294 PNIVTYSTLLNGLCKEGKLQEAV----EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           P+I+TYS++++GLCKE ++ EA+    E+L  M  +   PD   +  II+  C  G +  
Sbjct: 333 PDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDR 392

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL----CKTDPNRAFQVYLSMRNRSISV 405
           A   +DEM   G  P+       I  +N +V G     CKT+   A  +   M +  +  
Sbjct: 393 AIKVVDEMSEHGCIPD-------ITTYNCIVDGFLCKSCKTE--EALDLLNLMVSNGLCP 443

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D+ TY SL     ++ ++ ++  +   +   G  PD+  ++A++  L  + +   A +  
Sbjct: 444 DTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFF 503

Query: 466 LLELMNKCVEAE 477
              + N C+  E
Sbjct: 504 AYMVSNGCMPDE 515



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 163/319 (51%), Gaps = 17/319 (5%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  + ++ DV +AL + +S  +    G + D  T++ ++  L S+ ++  A+ L
Sbjct: 231 VTYNVLINAMCSQGDVGEALKVLNSLPSY---GCKPDAVTYTPVLKSLCSSERWEEADKL 287

Query: 73  LDRVNKEKCDITEDIF----LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           L ++    C   E  F     S+C+  G V R   A +V  +M E GC P   +Y +++ 
Sbjct: 288 LTKMFSNDCAPDEVTFNAVITSLCQ-KGFVGR---ATKVLAQMSEHGCTPDIITYSSIMD 343

Query: 129 ILVEENQLKLAFRFYRHM-REIGIQPCV---ASLNVLIKALCKNSGTMDAAFKIFREMPN 184
            L +E ++  A +  + +  E+  + C+    + N +I +LC+  G  D A K+  EM  
Sbjct: 344 GLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQK-GLFDRAIKVVDEMSE 402

Query: 185 RGCTPDSYTYGTLING-LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
            GC PD  TY  +++G LC+  K  EA +L   M +    P   TY SL  GL +   +E
Sbjct: 403 HGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEME 462

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
            A+ +F  +++ G+ P+   Y++++ GLCK   +  A++    M+S    P+  TY  L+
Sbjct: 463 RAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILV 522

Query: 304 NGLCKEGKLQEAVEILDRM 322
            G+  EG L+EA E+L  +
Sbjct: 523 EGIAYEGFLEEAKELLGNL 541



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 154/315 (48%), Gaps = 41/315 (13%)

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM----- 252
           + GL + G++  A  L   +      P V+    LI  LC    V +A R+ E +     
Sbjct: 68  LRGLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGPSAT 127

Query: 253 ------------RSKGVE------------PNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
                       R+  ++            P+ FTY+ L+  LC  GC   A+ +   M+
Sbjct: 128 IITYNTMVNGYCRAGNIDAARRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDML 187

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   P++VTYS LL+  CKE   ++AV +LD M+ +G +PD   Y  +I+  C  G   
Sbjct: 188 HRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVG 247

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           EA   L+ +   G  P+ +T++        V++ LC ++    A ++   M +   + D 
Sbjct: 248 EALKVLNSLPSYGCKPDAVTYT-------PVLKSLCSSERWEEADKLLTKMFSNDCAPDE 300

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL--- 464
           +T++++IT  C+KG + ++ +++ ++   GC PD  T+S++M  L   R++ +A +L   
Sbjct: 301 VTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKE 360

Query: 465 LLLELMNK-CVEAEV 478
           LL E+++K C+  +V
Sbjct: 361 LLAEMVSKNCIPDQV 375


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 229/452 (50%), Gaps = 37/452 (8%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           KAL  F++A  +       +   +S +I  LV +     A  LL+       D+ +++  
Sbjct: 45  KALEFFNAAPEK-------NIQLYSAIIHVLVGSKLLSHARYLLN-------DLVQNLVK 90

Query: 90  SICRGYGRVHRPLDAMRV-FDKMKEF-GCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           S        H+P  A ++ F ++      + TP  Y  ++ +L +   ++ A   Y    
Sbjct: 91  S--------HKPYHACQLAFSELSRLKSSKFTPNVYGELIIVLCKMELVEEALSMYH--- 139

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           ++G    + + NVL+  L K +G  +  ++I+ EM + G +P   T+GTLI+G CR G +
Sbjct: 140 KVGAALTIQACNVLLYVLVK-TGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDL 198

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A+E+F EM  K   PTV+ YT LI GLC    +EEA  +   MR  GV PNV+TY++L
Sbjct: 199 LRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTL 258

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           MDG CK   + QA+ L Q M+ +   P++VT+  L++GLCK G+++ A  +   M    +
Sbjct: 259 MDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSV 318

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            P+  +Y  +I  +C +G   EA     E+    ++P+  T+S+ IR       GLC   
Sbjct: 319 TPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIR-------GLCSVS 371

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
               A  ++  M    I  +S+TY+SLI   CK+G + K+  I  ++  +G  P+  T+S
Sbjct: 372 RTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFS 431

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            ++      R + QAA  +  E++ K +  +V
Sbjct: 432 TLIDGYCKIRNL-QAAMGIYSEMVIKSLSPDV 462



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/428 (30%), Positives = 203/428 (47%), Gaps = 22/428 (5%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           +NG      TF  +I           A+++ D +  +    T  ++  + RG    ++  
Sbjct: 175 SNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIE 234

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +   M+E G  P   +Y T++    +    K A R Y+ M   G+ P V +  +LI
Sbjct: 235 EAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILI 294

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G M AA  +F  M     TP+   Y +LI+  C++G + EA  LF E+E    
Sbjct: 295 DGLCK-FGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEV 353

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP V TY+ LI GLC     EEA  +FE+M  +G+  N  TY+SL+DG CK G   +A+E
Sbjct: 354 SPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALE 413

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   M      PN++T+STL++G CK   LQ A+ I   M ++ L PD   Y  +I   C
Sbjct: 414 ICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHC 473

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSM 398
             G  +EA     +M+  GITPN  T S        ++ GLCK    +D    F   +  
Sbjct: 474 KYGSMKEALKLYSDMLDNGITPNCYTIS-------CLLDGLCKDGKISDALELFTEKIEF 526

Query: 399 RNRSISVDS----------LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           +    +VD+          + Y++LI   C+ G   K+ ++  ++   G  PDE  +  +
Sbjct: 527 QTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVM 586

Query: 449 MTALWDRR 456
           +  L+  +
Sbjct: 587 LRGLFQVK 594



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 51/260 (19%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T+S++I  L S ++   A ++ +++ KE        + S+  G  +  +   A+ + 
Sbjct: 356 DVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEIC 415

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M E G EP   ++ T++    +   L+ A   Y  M    + P V +   +I   CK 
Sbjct: 416 SQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCK- 474

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYT----------------------------------- 193
            G+M  A K++ +M + G TP+ YT                                   
Sbjct: 475 YGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVD 534

Query: 194 -------------YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
                        Y  LI+GLC+ G+  +A +LF +M      P  V Y  ++ GL Q K
Sbjct: 535 AGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVK 594

Query: 241 SVEEAMRLFEEMRSKGVEPN 260
            +   M L  +M   GV PN
Sbjct: 595 YI--LMMLHADMLKFGVIPN 612


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 228/454 (50%), Gaps = 37/454 (8%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE 79
           QL  A  D    L  F  +  E+     +   T   ++  L ++ ++      LD++ K 
Sbjct: 50  QLFNAGVDSELVLRFFQWSQKEFR--ISYGLETTGKVLHLLANSKKYSKVRSFLDKLVKN 107

Query: 80  KCDITEDIFLSICRGYGR--------------------VHRPLDAMRVFDKMKEFGCEPT 119
           +      +F S+  G  R                    +H    A  VF +++++G + +
Sbjct: 108 EKHTVSSVFHSLLLGGDRPCANALITDMLVLAYVTNLEIH---SACEVFRRVQDYGFKLS 164

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
             S   +L+ LV+ N+       Y+ M +  IQP + + N+ I  LCK +G ++ A  + 
Sbjct: 165 LNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCK-AGKLNKAEDVI 223

Query: 180 REMPNRGCTPDSYTYGTLINGLCR---LGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
            ++   G +P+  TY TLI+G C+    GK+Y A  + KEM      P  +T+ +LI+G 
Sbjct: 224 EDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGF 283

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+ ++V  A   FEEM+ +G++PN+ TY+SL++GL   G   +A+ L   M+    +PNI
Sbjct: 284 CKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNI 343

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           VT++ L+NG CK+  ++EA ++ D +  Q L P+A  +  +I  FC  G  +E     + 
Sbjct: 344 VTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNS 403

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLIT 415
           M+  GI PN       +  +N ++ GLC+    RA +  L+ M N  +  D +TY+ LI 
Sbjct: 404 MLDEGIFPN-------VSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIG 456

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            +CK G+  K+ +++ E++  G  P+  T++ +M
Sbjct: 457 GWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLM 490



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 216/419 (51%), Gaps = 20/419 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRGYGRVHR 100
           GF+   ++ + ++S LV  N+    + +   + K +      T +IF++ +C+  G++++
Sbjct: 160 GFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKA-GKLNK 218

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI---GIQPCVAS 157
             D   V + +K +G  P   +Y T++    ++      +R    ++E+    I P   +
Sbjct: 219 AED---VIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEIT 275

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N LI   CK+   + AA   F EM  +G  P+  TY +LINGL   GK+ EA  L+ +M
Sbjct: 276 FNTLIDGFCKDENVL-AAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKM 334

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P +VT+ +LING C+ K ++EA +LF+++  + + PN  T+++++D  CK G  
Sbjct: 335 VGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMM 394

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +   L   M+ +   PN+ TY+ L+ GLC+   ++ A ++L+ M+   LK D   Y  +
Sbjct: 395 EEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNIL 454

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYL 396
           I  +C  G+  +A   L EM+  G+ PN +T+       NT++ G C + +   A +V  
Sbjct: 455 IGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTY-------NTLMDGYCMEGNLKAALKVRT 507

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            M       + +TY+ LI  FCK G +  + R+++E++  G  P+  T+  V   + ++
Sbjct: 508 QMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEK 566



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 186/339 (54%), Gaps = 15/339 (4%)

Query: 150 GIQPCVASL--NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           G +PC  +L  ++L+ A   N   + +A ++FR + + G      +   L++ L +  + 
Sbjct: 123 GDRPCANALITDMLVLAYVTNL-EIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNET 181

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            E + ++KEM  +   P + T+   INGLC++  + +A  + E++++ G  PN+ TY++L
Sbjct: 182 GEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTL 241

Query: 268 MDGLCKGGCSSQ---AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +DG CK G + +   A  +L+ M++ +  PN +T++TL++G CK+  +  A    + M+ 
Sbjct: 242 IDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQR 301

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           QGLKP+   Y  +I+   + GK  EA    D+MV  G+ PN +T+       N ++ G C
Sbjct: 302 QGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTF-------NALINGFC 354

Query: 385 KTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K      A +++  +  + +  +++T++++I  FCK G + +   + + ++ +G  P+  
Sbjct: 355 KKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVS 414

Query: 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           T++ ++  L   + +R AA+ LL E+ N  ++A+V   N
Sbjct: 415 TYNCLIAGLCRNQNVR-AAKKLLNEMENYELKADVVTYN 452


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/460 (28%), Positives = 226/460 (49%), Gaps = 11/460 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+   VL+ +R  KD +KAL  F     +   GF H   ++ +M+  L        A + 
Sbjct: 76  ISKTTVLRTLRLIKDPSKALRFFKWTQQK---GFSHTPESYFIMLEILGRERNLNVARNF 132

Query: 73  L---DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           L   ++ +K    + +  F S+ R Y       ++M++F  MK     P+  ++ ++++I
Sbjct: 133 LFSIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSI 192

Query: 130 LVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
           L++  +  +A   Y  M    G+ P   + NVLI+  CKNS  +D  F+ FREM +  C 
Sbjct: 193 LLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNS-MVDEGFRFFREMESFNCD 251

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETK--ACSPTVVTYTSLINGLCQSKSVEEAM 246
            D  TY TL++GLCR GK+  A+ L   M  K    +P VVTYT+LI G C  + VEEA+
Sbjct: 252 ADVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEAL 311

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR-HRPNIVTYSTLLNG 305
            + EEM S+G++PN+ TY++L+ GLC+     +  ++L+ M S     P+  T++T+++ 
Sbjct: 312 VVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHL 371

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
            C  G L EA+++ + MK   +  D+  Y  +I   C  G Y  A    DE+    I  +
Sbjct: 372 HCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLS 431

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           +         +N + + LC+    +  +  +    +  + D  +Y+++I   CK+G    
Sbjct: 432 KFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQDPQSYTTVIMGHCKEGAYES 491

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              ++  ++    LPD   +  ++     + K   A E L
Sbjct: 492 GYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETL 531



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 199/450 (44%), Gaps = 51/450 (11%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIR    +++V +ALV+ +  T+    G + +  T++ ++  L  A++    +D+L+R+ 
Sbjct: 297 LIRGYCMKQEVEEALVVLEEMTSR---GLKPNMITYNTLVKGLCEAHKLDKMKDVLERM- 352

Query: 78  KEKCDITEDIF-------LSICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAI 129
           K     + D F       L  C G       LD A++VF+ MK+F       SY T++  
Sbjct: 353 KSDGGFSPDTFTFNTIIHLHCCAG------NLDEALKVFESMKKFRIPADSASYSTLIRS 406

Query: 130 LVEENQLKLAFRFYRHMRE-------IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           L ++    +A + +  + E        G +P  AS N + ++LC++  T  A  ++ R++
Sbjct: 407 LCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAE-RVIRQL 465

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             RG T D  +Y T+I G C+ G      EL   M  +   P +  Y  LI+G  Q    
Sbjct: 466 MKRG-TQDPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKP 524

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
             A    E+M     +P   T+ S++  L + GC+ ++  ++ MM+ K  R NI   +  
Sbjct: 525 LLAKETLEKMLKSSYQPKTSTWHSVLAKLLEKGCAHESSCVIVMMLEKNVRQNINLSTES 584

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI--ISCF-CDIGKYQEAANFLDEMVL 359
           L  L    + + A EI++      L    G Y KI  ++ F    GK  EA   L    L
Sbjct: 585 LQLLFGREQHERAFEIIN------LLYKNGYYVKIEEVAQFLLKRGKLSEACKLL----L 634

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
             +  ++   ++ I + N  +  LCK +  + AF +   +    +  +      LI    
Sbjct: 635 FSLENHQ---NVDIDLCNATILNLCKINKVSEAFSLCYELVENGLHQELTCLDDLIAALE 691

Query: 419 KKGDIHKSARIVDELV----LDGCLPDEGT 444
           + G   ++A I   L     L+G +P+  T
Sbjct: 692 EGGKREEAAFISKRLPRLDNLNGSMPNHST 721


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 199/379 (52%), Gaps = 13/379 (3%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I  S+CR  G+V    +A R+  +M      P   SY TV+       +LK A +    M
Sbjct: 264 IIYSLCR-LGKVK---EAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDM 319

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +  G++P   + N +I  LCK   + +A  K+ REM ++   PD+  Y TLI+G  +LG 
Sbjct: 320 QIKGLKPNRYTYNSIILLLCKIGKSFEAE-KVLREMMSQKIIPDNVVYTTLIHGFFKLGH 378

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A + F EM +K  SP  +TYT+LI G  Q   V E   LF EM S+G++P+  TY++
Sbjct: 379 VRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTT 438

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+D  CK G    A  L   M+     PNIVTY  L++GLCK G+L  A E+LD M+ +G
Sbjct: 439 LIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L+ +  +Y  +++  C  G  ++A   + EM + GI P+ +T++       TV+   C+ 
Sbjct: 499 LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYT-------TVIDAYCRL 551

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            D ++A ++   M +R +    +T++ L+  FC  G +    R++  ++  G +PD  T+
Sbjct: 552 GDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611

Query: 446 SAVMTALWDRRKMRQAAEL 464
           + +M     R  M    ++
Sbjct: 612 NTLMKQHCIRNSMNTTTKI 630



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 228/452 (50%), Gaps = 34/452 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G   + ++++++I  L    + + A  LL +++      T D+  + ++  GY  +    
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSS--TPDVVSYSTVIDGYCHLGELK 310

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+++ D M+  G +P   +Y +++ +L +  +   A +  R M    I P       LI
Sbjct: 311 KALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI 370

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K  G +  A K F EM ++  +PD  TY TLI G  + GK+ E + LF EM ++  
Sbjct: 371 HGFFK-LGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGL 429

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VTYT+LI+  C++  +  A  L  EM   G+ PN+ TY +L+DGLCK G    A E
Sbjct: 430 KPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANE 489

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M  K  + N+  Y++++NG+CK G +++A++++  M++ G+ PDA  Y  +I  +C
Sbjct: 490 LLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYC 549

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLT----------------------WSLHIRI----- 375
            +G   +A   L EM+  G+ P  +T                      W L   I     
Sbjct: 550 RLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAI 609

Query: 376 -HNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            +NT+++  C +   N   ++Y  MRN+ ++ DS TY+ LI   CK  ++ ++  +  E+
Sbjct: 610 TYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEM 669

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  G +P   +++A++   + ++K+ +A EL 
Sbjct: 670 IEKGYVPTVTSYNALIKRFYKKKKILEARELF 701



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 242/489 (49%), Gaps = 55/489 (11%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFS--LMISKLVSANQFRPAEDLLDRVNK 78
           L+  + D N  L  FD A        R + S  +  ++I   V +N  R A +L+     
Sbjct: 109 LMNIKNDYNLVLAFFDWARV------RREPSLEARCIIIHIAVVSNDLRLAHELV----- 157

Query: 79  EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138
                  D FL+     G V       R+    K +G  P P ++     +LVE   L  
Sbjct: 158 ------HDYFLNSKLEIG-VKMTQFTHRLIYTYKYWG--PNPIAFDIFFQVLVEIGHLSE 208

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +    +   G+   V S N  +  +  NS  ++ A K+F E    G + ++ +Y  +I
Sbjct: 209 ARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEY---GISWNTTSYNIII 265

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
             LCRLGK+ EA  L  +M+ ++ +P VV+Y+++I+G C    +++A++L ++M+ KG++
Sbjct: 266 YSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLK 325

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PN +TY+S++  LCK G S +A ++L+ M+S++  P+ V Y+TL++G  K G ++ A + 
Sbjct: 326 PNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKW 385

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI--- 375
            D M  + + PD   Y  +I  F   GK  E  N   EM+  G+ P+ +T++  I +   
Sbjct: 386 FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445

Query: 376 ----------HNTVVQ---------------GLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
                     HN +VQ               GLCK  + + A ++   MR + + ++   
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCI 505

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           Y+S++   CK G+I ++ +++ E+ + G  PD  T++ V+ A + R      A  LL E+
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDA-YCRLGDIDKAHKLLQEM 564

Query: 470 MNKCVEAEV 478
           +++ ++  V
Sbjct: 565 LDRGLQPTV 573



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 205/416 (49%), Gaps = 12/416 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ KAL + D    +   G + +  T++ +I  L    +   AE +L  +  +K      
Sbjct: 308 ELKKALKLMDDMQIK---GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNV 364

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ ++  G+ ++     A + FD+M      P   +Y T++    +  ++      +  M
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G++P   +   LI   CK +G M  AF +  EM   G TP+  TYG LI+GLC+ G+
Sbjct: 425 ISRGLKPDEVTYTTLIDVYCK-AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A EL  EM  K     V  Y S++NG+C++ ++E+A++L +EM   G++P+  TY++
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++D  C+ G   +A +LLQ M+ +  +P +VT++ L+NG C  G L++   +L  M  +G
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG 603

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           + PDA  Y  ++   C              M   G+ P+  T+       N +++G CK 
Sbjct: 604 IVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTY-------NILIKGHCKA 656

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
            +   A+ +Y  M  +       +Y++LI  F KK  I ++  + +E+   G + D
Sbjct: 657 RNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVAD 712



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 2/261 (0%)

Query: 99  HRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           H  LD A  + D+M++ G +     Y +++  + +   ++ A +  + M   GI P   +
Sbjct: 481 HGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAIT 540

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
              +I A C+  G +D A K+ +EM +RG  P   T+  L+NG C LG + +   L   M
Sbjct: 541 YTTVIDAYCR-LGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
             K   P  +TY +L+   C   S+    ++++ MR++GV P+  TY+ L+ G CK    
Sbjct: 600 LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNL 659

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A  L + MI K + P + +Y+ L+    K+ K+ EA E+ + M+  GL  D  +Y   
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFF 719

Query: 338 ISCFCDIGKYQEAANFLDEMV 358
           +    + G  +   N  DE +
Sbjct: 720 VDMCYEEGDVEITLNLCDEAI 740



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 38/254 (14%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  +I  L    +   A +LLD + K+   +   I+ S+  G  +      A+++  +M
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC----- 166
           +  G +P   +Y TV+        +  A +  + M + G+QP V + NVL+   C     
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGML 589

Query: 167 -------------------------------KNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
                                          +NS  M+   KI++ M N+G  PDS TY 
Sbjct: 590 EDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNS--MNTTTKIYKRMRNQGVAPDSNTYN 647

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            LI G C+   + EA  L+KEM  K   PTV +Y +LI    + K + EA  LFEEMR  
Sbjct: 648 ILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGH 707

Query: 256 GVEPNVFTYSSLMD 269
           G+  +   Y+  +D
Sbjct: 708 GLVADGEIYNFFVD 721


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 230/428 (53%), Gaps = 21/428 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRG--YGRV 98
           G   D  +++ ++  L  A ++   ++L++ + +  C    +T +  +S +CR   + RV
Sbjct: 259 GCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERV 318

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H       V  +M E GC P  + Y T++  + +E  L++A      M   G++P V   
Sbjct: 319 HE------VLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCY 372

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N L+K LC ++   +   ++  EM ++ C  D  T+  L++  C+ G +    EL ++M 
Sbjct: 373 NTLLKGLC-SAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 431

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
              C P V+TYT++ING C+   ++EA+ L + M + G +PN  +Y+ ++ GLC      
Sbjct: 432 EHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWV 491

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A +L+  MI +    N +T++TL+N LCK+G +++A+E+L +M + G  PD   Y  +I
Sbjct: 492 DAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 551

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
                 GK  EA   L+ MV  G++PN +       I++++   L +    N+  Q++ +
Sbjct: 552 DGLGKAGKTDEALELLNVMVNKGMSPNTI-------IYSSIASALSREGRINKVIQMFDN 604

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +++ +I  D++ Y+++I+  CK+G+  ++   +  +V  GC+P+E T++ ++  L     
Sbjct: 605 IQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGF 664

Query: 458 MRQAAELL 465
           +++A E+L
Sbjct: 665 VKEAQEML 672



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 226/496 (45%), Gaps = 39/496 (7%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   V++ + A   +  AL + D        G       + +++        FR A  +L
Sbjct: 161 TYFPVVRALCARGRIADALAVLDEMPRR---GCAPIPPMYHVILEAACRGGGFRSAVRVL 217

Query: 74  DRVNKEKC--DITE-DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           + ++   C  D+   ++ L+     G V    +A+ +   +  FGCEP   SY  VL  L
Sbjct: 218 EDLHARGCALDVGNCNLVLNAICDQGSVD---EALHLLRDLPSFGCEPDVVSYNAVLKGL 274

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
               +          M  +   P + + N LI  LC+N G  +   ++  +M   GCTPD
Sbjct: 275 CMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRN-GLFERVHEVLAQMVEHGCTPD 333

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
              Y T+I+G+C+ G +  A E+   M +    P VV Y +L+ GLC ++  EE   L  
Sbjct: 334 IRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLA 393

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EM  K    +  T++ L+D  C+ G   + +ELL+ M+     P+++TY+T++NG CKEG
Sbjct: 394 EMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEG 453

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            + EAV +L  M   G KP+   Y  ++   C   ++ +A + + +M+  G   N +T++
Sbjct: 454 LIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFN 513

Query: 371 LHIRI----------------------------HNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             I                              ++TV+ GL K    + A ++   M N+
Sbjct: 514 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNK 573

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +S +++ YSS+ +   ++G I+K  ++ D +       D   ++AV+++L  R +  +A
Sbjct: 574 GMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERA 633

Query: 462 AELLLLELMNKCVEAE 477
            E L   + + CV  E
Sbjct: 634 IEFLAYMVSSGCVPNE 649



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 172/357 (48%), Gaps = 9/357 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   +Y  V+  L    ++  A      M   G  P     +V+++A C+  G   +A +
Sbjct: 157 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGG-FRSAVR 215

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  ++  RGC  D      ++N +C  G + EA  L +++ +  C P VV+Y +++ GLC
Sbjct: 216 VLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLC 275

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
            +K       L EEM      PN+ T+++L+  LC+ G   +  E+L  M+     P+I 
Sbjct: 276 MAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIR 335

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            Y+T+++G+CKEG L+ A EIL+RM   GLKP+   Y  ++   C   +++E    L EM
Sbjct: 336 MYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 395

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITC 416
                  + +T+       N +V   C+    +R  ++   M       D +TY+++I  
Sbjct: 396 FDKDCPLDDVTF-------NILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVING 448

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           FCK+G I ++  ++  +   GC P+  +++ V+  L    +   A +L+   +   C
Sbjct: 449 FCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGC 505



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 160/320 (50%), Gaps = 7/320 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G + +   ++ ++  L SA ++   E+LL  +  + C   D+T +I +      G V R 
Sbjct: 364 GLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDR- 422

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              + + ++M E GC P   +Y TV+    +E  +  A    + M   G +P   S  ++
Sbjct: 423 --VIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIV 480

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K LC     +DA   +  +M  +GC  +  T+ TLIN LC+ G + +A EL K+M    
Sbjct: 481 LKGLCSAERWVDAE-DLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 539

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP +++Y+++I+GL ++   +EA+ L   M +KG+ PN   YSS+   L + G  ++ +
Sbjct: 540 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI 599

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   +     R + V Y+ +++ LCK G+ + A+E L  M   G  P+   Y  +I   
Sbjct: 600 QMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL 659

Query: 342 CDIGKYQEAANFLDEMVLGG 361
              G  +EA   L E+   G
Sbjct: 660 ASEGFVKEAQEMLTELCSKG 679



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 11/238 (4%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +++ G C++  +E A RL   +    V PN +TY  ++  LC  G  + A+ +L  M 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   P    Y  +L   C+ G  + AV +L+ +  +G   D G    +++  CD G   
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 246

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDS 407
           EA + L ++   G  P+ +++       N V++GLC        Q  +  M   +   + 
Sbjct: 247 EALHLLRDLPSFGCEPDVVSY-------NAVLKGLCMAKRWGCVQELMEEMVRMACPPNI 299

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +T+++LI+  C+ G   +   ++ ++V  GC PD   ++ ++  +     +  A E+L
Sbjct: 300 VTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEIL 357


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 199/379 (52%), Gaps = 13/379 (3%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I  S+CR  G+V    +A R+  +M      P   SY TV+       +LK A +    M
Sbjct: 264 IIYSLCR-LGKVK---EAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDM 319

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +  G++P   + N +I  LCK   + +A  K+ REM ++   PD+  Y TLI+G  +LG 
Sbjct: 320 QIKGLKPNRYTYNSIILLLCKIGKSFEAE-KVLREMMSQKIIPDNVVYTTLIHGFFKLGH 378

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A + F EM +K  SP  +TYT+LI G  Q   V E   LF EM S+G++P+  TY++
Sbjct: 379 VRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTT 438

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+D  CK G    A  L   M+     PNIVTY  L++GLCK G+L  A E+LD M+ +G
Sbjct: 439 LIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L+ +  +Y  +++  C  G  ++A   + EM + GI P+ +T++       TV+   C+ 
Sbjct: 499 LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYT-------TVIDAYCRL 551

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            D ++A ++   M +R +    +T++ L+  FC  G +    R++  ++  G +PD  T+
Sbjct: 552 GDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611

Query: 446 SAVMTALWDRRKMRQAAEL 464
           + +M     R  M    ++
Sbjct: 612 NTLMKQHCIRNSMNTTTKI 630



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 227/452 (50%), Gaps = 34/452 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G   + ++++++I  L    + + A  LL +++      T D+  + ++  GY  +    
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSS--TPDVVSYSTVIDGYCHLGELK 310

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+++ D M+  G +P   +Y +++ +L +  +   A +  R M    I P       LI
Sbjct: 311 KALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI 370

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K  G +  A K F EM ++  +PD  TY TLI G  + GK+ E + LF EM ++  
Sbjct: 371 HGFFK-LGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGL 429

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VTYT+LI+  C++  +  A  L  EM   G+ PN+ TY +L+DGLCK G    A E
Sbjct: 430 KPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANE 489

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M  K  + N+  Y++++NG+CK G +++A++++  M++ G+ PDA  Y  +I  +C
Sbjct: 490 LLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYC 549

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLT----------------------WSLHIRI----- 375
            +G   +A   L EM+  G+ P  +T                      W L   I     
Sbjct: 550 RLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAI 609

Query: 376 -HNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            +NT+++  C +   N   ++Y  MRN+ ++ DS TY+ LI   CK  ++ ++  +  E+
Sbjct: 610 TYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEM 669

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  G +P   +++A++   + +RK  +A EL 
Sbjct: 670 IEKGYVPTVTSYNALIKRFYKKRKFXEARELF 701



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 242/489 (49%), Gaps = 55/489 (11%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFS--LMISKLVSANQFRPAEDLLDRVNK 78
           L+  + D N  L  FD A        R + S  +  ++I   V +N  R A +L+     
Sbjct: 109 LMNIKNDYNLVLAFFDWARV------RREPSLEARCIIIHIAVVSNDLRLAHELV----- 157

Query: 79  EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138
                  D FL+     G V       R+    K +G  P P ++     +LVE   L  
Sbjct: 158 ------HDYFLNSKLEIG-VKMTQFTHRLIYTYKYWG--PNPIAFDIFFQVLVEIGHLSE 208

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +    +   G+   V S N  +  +  NS  ++ A K+F E    G + ++ +Y  +I
Sbjct: 209 ARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEY---GISWNTTSYNIII 265

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
             LCRLGK+ EA  L  +M+ ++ +P VV+Y+++I+G C    +++A++L ++M+ KG++
Sbjct: 266 YSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLK 325

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PN +TY+S++  LCK G S +A ++L+ M+S++  P+ V Y+TL++G  K G ++ A + 
Sbjct: 326 PNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKW 385

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI--- 375
            D M  + + PD   Y  +I  F   GK  E  N   EM+  G+ P+ +T++  I +   
Sbjct: 386 FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445

Query: 376 ----------HNTVVQ---------------GLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
                     HN +VQ               GLCK  + + A ++   MR + + ++   
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCI 505

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           Y+S++   CK G+I ++ +++ E+ + G  PD  T++ V+ A + R      A  LL E+
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDA-YCRLGDIDKAHKLLQEM 564

Query: 470 MNKCVEAEV 478
           +++ ++  V
Sbjct: 565 LDRGLQPTV 573



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 204/416 (49%), Gaps = 12/416 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ KAL + D    +   G + +  T++ +I  L    +   AE +L  +  +K      
Sbjct: 308 ELKKALKLMDDMQIK---GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNV 364

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ ++  G+ ++     A + FD+M      P   +Y T++    +  ++      +  M
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G++P   +   LI   CK +G M  AF +  EM   G TP+  TYG LI+GLC+ G+
Sbjct: 425 ISRGLKPDEVTYTTLIDVYCK-AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A EL  EM  K     V  Y S++NG+C++ ++E+A++L +EM   G++P+  TY++
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++D  C+ G   +A +LLQ M+ +  +P +VT++ L+NG C  G L++   +L  M  +G
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG 603

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           + PDA  Y  ++   C              M   G+ P+  T+       N +++G CK 
Sbjct: 604 IVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTY-------NILIKGHCKA 656

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
            +   A+ +Y  M  +       +Y++LI  F KK    ++  + +E+   G + D
Sbjct: 657 RNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVAD 712



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 128/261 (49%), Gaps = 2/261 (0%)

Query: 99  HRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           H  LD A  + D+M++ G +     Y +++  + +   ++ A +  + M   GI P   +
Sbjct: 481 HGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAIT 540

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
              +I A C+  G +D A K+ +EM +RG  P   T+  L+NG C LG + +   L   M
Sbjct: 541 YTTVIDAYCR-LGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
             K   P  +TY +L+   C   S+    ++++ MR++GV P+  TY+ L+ G CK    
Sbjct: 600 LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNL 659

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A  L + MI K + P + +Y+ L+    K+ K  EA E+ + M+  GL  D  +Y   
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFF 719

Query: 338 ISCFCDIGKYQEAANFLDEMV 358
           +    + G  +   N  DE +
Sbjct: 720 VDMCYEEGDVEITLNLCDEAI 740



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 38/254 (14%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  +I  L    +   A +LLD + K+   +   I+ S+  G  +      A+++  +M
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC----- 166
           +  G +P   +Y TV+        +  A +  + M + G+QP V + NVL+   C     
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGML 589

Query: 167 -------------------------------KNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
                                          +NS  M+   KI++ M N+G  PDS TY 
Sbjct: 590 EDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNS--MNTTTKIYKRMRNQGVAPDSNTYN 647

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            LI G C+   + EA  L+KEM  K   PTV +Y +LI    + +   EA  LFEEMR  
Sbjct: 648 ILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGH 707

Query: 256 GVEPNVFTYSSLMD 269
           G+  +   Y+  +D
Sbjct: 708 GLVADGEIYNFFVD 721


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 211/416 (50%), Gaps = 12/416 (2%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           AL  FD A  +Y  GFR    + + M+  LV   +    E +   + + +  +    F  
Sbjct: 178 ALEGFDRA-GDY--GFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDV 234

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G  +V +   A  V + MK +G  P+  +Y T++    +  ++  A    + M    
Sbjct: 235 VINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKR 294

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I P   + N+LI   C++   + AA K+F EM  +G  P+  TY +LINGLC  GK+ EA
Sbjct: 295 IHPNEITFNILIDGFCRDE-NVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEA 353

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             L  +M      P VVTY +LING C+ K ++EA  + +++  +G+ PNV T+++L+D 
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
             K G    A  L  MM+     PN+ TY+ L+ G C+EG ++EA ++   M+  GLK D
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
              Y  ++   C  G+ ++A   LDEM   G+ P+ LT+       N ++ G  +  +  
Sbjct: 474 LVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTY-------NALIDGYFREGNST 526

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            A  V   M  +    + +TY+ LI  FC KG + ++ R+++E++  G +P+  T+
Sbjct: 527 AALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTY 582



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 224/452 (49%), Gaps = 29/452 (6%)

Query: 15  SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLD 74
           S+ +  L  +E   +  L  F     E+  G  H+   F  ++  L +A  +     LLD
Sbjct: 74  SSLLQHLFNSEAQPDLILCYFKWTQKEF--GAIHNVEQFCRLLHLLANAKNYNKIRALLD 131

Query: 75  RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
              K        IF S+                   +  +GC  +    + V A  V+  
Sbjct: 132 SFAKNAHYSNSTIFHSL-----------------SVLGSWGCANSIIVDMLVWA-YVKNG 173

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           ++ LA   +    + G +    S N ++ +L K  G +     +++EM  R    +  T+
Sbjct: 174 EMDLALEGFDRAGDYGFRLSALSCNPMLVSLVK-EGRIGVVESVYKEMIRRRIGVNVVTF 232

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
             +INGLC++GK  +A ++ ++M+    SP+V+TY ++I+G C++  + +A  L +EM +
Sbjct: 233 DVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVA 292

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           K + PN  T++ L+DG C+    + A ++ + M  +  +PN+VTY++L+NGLC  GKL E
Sbjct: 293 KRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDE 352

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+ + D+M   GLKP+   Y  +I+ FC     +EA   LD++   G+ PN +T+     
Sbjct: 353 ALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITF----- 407

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             NT++    K    + AF +   M +  +  +  TY+ LI  FC++G++ ++ ++  E+
Sbjct: 408 --NTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEM 465

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +G   D  T++ ++ AL  + + R+A  LL
Sbjct: 466 EGNGLKADLVTYNILVDALCKKGETRKAVRLL 497



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 187/396 (47%), Gaps = 69/396 (17%)

Query: 143 YRHMREIGIQPCVASL--NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           +  +  +G   C  S+  ++L+ A  KN G MD A + F    + G    + +   ++  
Sbjct: 145 FHSLSVLGSWGCANSIIVDMLVWAYVKN-GEMDLALEGFDRAGDYGFRLSALSCNPMLVS 203

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           L + G+I   + ++KEM  +     VVT+  +INGLC+    ++A  + E+M++ G  P+
Sbjct: 204 LVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPS 263

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKR-H--------------------------- 292
           V TY++++DG CK G   +A  LL+ M++KR H                           
Sbjct: 264 VITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFE 323

Query: 293 -------RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
                  +PN+VTY++L+NGLC  GKL EA+ + D+M   GLKP+   Y  +I+ FC   
Sbjct: 324 EMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKK 383

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRIHN 377
             +EA   LD++   G+ PN +T++                             ++  +N
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYN 443

Query: 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++ G C+  +   A ++   M    +  D +TY+ L+   CKKG+  K+ R++DE+   
Sbjct: 444 CLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEV 503

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           G  P   T++A++   +  R+    A L +  LM K
Sbjct: 504 GLNPSHLTYNALIDGYF--REGNSTAALNVRTLMEK 537



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 135/286 (47%), Gaps = 4/286 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +++V  A  +F+    +   G + +  T++ +I+ L S  +   A  L D+++       
Sbjct: 312 DENVTAAKKVFEEMQRQ---GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPN 368

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G+ +     +A  + D + + G  P   ++ T++    +  ++  AF    
Sbjct: 369 VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS 428

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M + G+ P V++ N LI   C+  G +  A K+ +EM   G   D  TY  L++ LC+ 
Sbjct: 429 MMLDTGVCPNVSTYNCLIVGFCR-EGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G+  +A  L  EM     +P+ +TY +LI+G  +  +   A+ +   M  KG   N+ TY
Sbjct: 488 GETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTY 547

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           + L+ G C  G   +A  LL  M+ K   PN  TY  L + + ++G
Sbjct: 548 NVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKG 593


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 199/370 (53%), Gaps = 11/370 (2%)

Query: 99  HRPLDAMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +R  +A+ +   M + G  C P   SY TV+    +E  L   +  Y  M +  I P V 
Sbjct: 65  NRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVV 124

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N +I ALCK + T+D A ++   M   G  PD  TY ++++G C  G+  EA    K+
Sbjct: 125 TYNSIIAALCK-AQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKK 183

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M +    P VVTY SL++ LC++    EA ++F+ M  +G++P + TY +L+ G    G 
Sbjct: 184 MRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 243

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +   LL +M+     PN   +S L+    K+ K++EA+ +  +M+ QGL P+A  YG 
Sbjct: 244 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGA 303

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           +I   C  G+ ++A  + ++M+  G++P  +       ++N+++ GLC  +   RA ++ 
Sbjct: 304 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNI-------VYNSLIHGLCTCNKWERAEELI 356

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           L M +R I ++++ ++S+I   CK+G + +S ++ D +V  G  PD  T+S ++      
Sbjct: 357 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 416

Query: 456 RKMRQAAELL 465
            KM +A +LL
Sbjct: 417 GKMDEATKLL 426



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 175/325 (53%), Gaps = 12/325 (3%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEA 210
           P V S N+L+  LC  + + +A  ++   M + G  C PD  +Y T+ING  + G + + 
Sbjct: 49  PDVFSYNILLNGLCDENRSQEA-LELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKT 107

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
              + EM  +  SP VVTY S+I  LC++++V++AM +   M   GV P+  TY+S++ G
Sbjct: 108 YSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 167

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
            C  G   +A+  L+ M S    P++VTY++L++ LCK G+  EA +I D M  +GLKP+
Sbjct: 168 FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPE 227

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              YG ++  +   G   E    LD MV  GI PN   +S+       +V    K +   
Sbjct: 228 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI-------LVCAYAKQEKVE 280

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  V+  MR + ++ +++TY ++I   CK G +  +    ++++ +G  P    +++++
Sbjct: 281 EAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 340

Query: 450 TALWDRRKMRQAAELLLLELMNKCV 474
             L    K  +A E L+LE++++ +
Sbjct: 341 HGLCTCNKWERAEE-LILEMLDRGI 364



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 221/455 (48%), Gaps = 12/455 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +   + V+KA+ +    T    +G   D  T++ ++    S+ Q + A   
Sbjct: 124 VTYNSIIAALCKAQTVDKAMEVL---TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 180

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++  +  +     + S+     +  R  +A ++FD M + G +P   +Y T+L     
Sbjct: 181 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYAT 240

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L         M   GI P     ++L+ A  K    ++ A  +F +M  +G  P++ 
Sbjct: 241 KGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQE-KVEEAMLVFSKMRQQGLNPNAV 299

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYG +I  LC+ G++ +A   F++M  +  SP  + Y SLI+GLC     E A  L  EM
Sbjct: 300 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 359

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+  N   ++S++D  CK G   ++ +L  +M+    +P+I+TYSTL++G C  GK+
Sbjct: 360 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 419

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L  M   G+KPD   Y  +I+ +C I + ++A     EM   G++P+ +T+   
Sbjct: 420 DEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITY--- 476

Query: 373 IRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               N ++QGL +T    A  ++Y+ +      ++  TY+ ++   CK      + R+  
Sbjct: 477 ----NIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQ 532

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            L L     +  T++ ++ AL    +  +A +L +
Sbjct: 533 NLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFV 567



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 196/436 (44%), Gaps = 46/436 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS T     G + + +T+  ++    +         LLD + +        +F  +  
Sbjct: 215 IFDSMTKR---GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVC 271

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +  +AM VF KM++ G  P   +Y  V+ IL +  +++ A  ++  M + G+ P
Sbjct: 272 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 331

Query: 154 CVASLNVLIKALCK----------------------------------NSGTMDAAFKIF 179
                N LI  LC                                     G +  + K+F
Sbjct: 332 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 391

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  PD  TY TLI+G C  GK+ EA +L   M +    P  VTY++LING C+ 
Sbjct: 392 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKI 451

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A+ LF EM S GV P++ TY+ ++ GL +   ++ A EL   +     +  + TY
Sbjct: 452 SRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTY 511

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     +A+ +   + L  LK +A  +  +I     +G+  EA +       
Sbjct: 512 NIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS 571

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G+ PN   W+  +   N + QGL +       Q++LSM +   +VDS   + ++    +
Sbjct: 572 NGLVPNY--WTYRLMAENIIGQGLLE----ELDQLFLSMEDNGCTVDSGMLNFIVRELLQ 625

Query: 420 KGDIHKSA---RIVDE 432
           +G+I ++     ++DE
Sbjct: 626 RGEITRAGTYLSMIDE 641



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 165/343 (48%), Gaps = 6/343 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V  A++ F+    E   G    N  ++ +I  L + N++  AE+L
Sbjct: 299 VTYGAVIGILCKSGRVEDAMLYFEQMIDE---GLSPGNIVYNSLIHGLCTCNKWERAEEL 355

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C +    F SI   + +  R +++ ++FD M   G +P   +Y T++    
Sbjct: 356 ILEMLDRGIC-LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 414

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              ++  A +    M  +G++P   + + LI   CK S  M  A  +FREM + G +PD 
Sbjct: 415 LAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKIS-RMKDALVLFREMESSGVSPDI 473

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  ++ GL +  +   AKEL+  +        + TY  +++GLC++K  ++A+R+F+ 
Sbjct: 474 ITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQN 533

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +    ++    T++ ++D L K G + +A +L     S    PN  TY  +   +  +G 
Sbjct: 534 LCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGL 593

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           L+E  ++   M+  G   D+G+   I+      G+   A  +L
Sbjct: 594 LEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL 636



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 11/232 (4%)

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR--PNIVTYS 300
           E+A  +F+E+  +G+ P+VF+Y+ L++GLC    S +A+ELL +M        P++V+YS
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           T++NG  KEG L +     + M  Q + P+   Y  II+  C      +A   L  MV  
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 152

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           G+ P+ +T+       N++V G C +  P  A      MR+  +  D +TY+SL+   CK
Sbjct: 153 GVMPDCMTY-------NSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 205

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            G   ++ +I D +   G  P+  T+  ++     +  + +   LL L + N
Sbjct: 206 NGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 257



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 2/270 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+S +I     A +   A  LL  +           + ++  GY ++ R  DA
Sbjct: 398 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDA 457

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+  G  P   +Y  +L  L +  +   A   Y  + + G Q  +++ N+++  
Sbjct: 458 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHG 517

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN  T D A ++F+ +       ++ T+  +I+ L ++G+  EAK+LF    +    P
Sbjct: 518 LCKNKLT-DDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVP 576

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  +   +     +EE  +LF  M   G   +    + ++  L + G  ++A   L
Sbjct: 577 NYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL 636

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             MI ++H     + ++L   L   GK QE
Sbjct: 637 S-MIDEKHFSLEASTASLFIDLLSGGKYQE 665


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 192/352 (54%), Gaps = 14/352 (3%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           GCE   +  + +  + +E      ++  Y  + + G  P +   NVL+   CK +G +  
Sbjct: 213 GCENLLRRVVRLRPVEIER-----SWALYLEVLDSGYPPKIYFFNVLMHGFCK-AGDVGN 266

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A  +F E+P RG  P   ++ TLI+G C+ G + E   L   ME++   P V T+++LIN
Sbjct: 267 ARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALIN 326

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           GLC+   ++E   LF+EM  +G+ PN  T+++L+DG CKGG    A++  QMM+++  RP
Sbjct: 327 GLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRP 386

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++VTY+ L+NGLCK G L+EA  +++ M   GLKPD   +  +I   C  G  + A    
Sbjct: 387 DLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIK 446

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSL 413
             MV  GI  + + ++        ++ GLC+    + A ++   M +     D  TY+ +
Sbjct: 447 RRMVEEGIELDDVAFT-------ALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMV 499

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I CFCKKGD+    +++ E+  DG +P   T++A+M  L  + +M+ A  LL
Sbjct: 500 IDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLL 551



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 223/426 (52%), Gaps = 41/426 (9%)

Query: 33  VIFDSATAEYAN-GFRHDNSTFSLMISKLVSANQF----RPAEDLLDRVNKEKCDITEDI 87
           ++FD+  + Y + GF  D    ++   +LV+ N+F    R  E+LL RV +         
Sbjct: 177 LVFDALISAYVDSGFTPD----AVQCFRLVTKNKFPVPIRGCENLLRRVVRL-------- 224

Query: 88  FLSICRGYGRVHRPLDAMR---VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
                       RP++  R   ++ ++ + G  P    +  ++    +   +  A   + 
Sbjct: 225 ------------RPVEIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFD 272

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            + + G++P V S N LI   CK SG ++  F++   M + G  PD +T+  LINGLC+ 
Sbjct: 273 EIPKRGLRPTVVSFNTLISGCCK-SGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKE 331

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G++ E   LF EM  +   P  VT+T+LI+G C+   V+ A++ F+ M ++GV P++ TY
Sbjct: 332 GRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTY 391

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           ++L++GLCK G   +A  L+  M +   +P+ +T++TL++G CK+G ++ A+EI  RM  
Sbjct: 392 NALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVE 451

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +G++ D   +  +IS  C  G+  +A   L +M+  G  P+  T+++       V+   C
Sbjct: 452 EGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTM-------VIDCFC 504

Query: 385 KT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K  D    F++   M++       +TY++L+   CK+G +  +  ++D ++  G  P++ 
Sbjct: 505 KKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDI 564

Query: 444 TWSAVM 449
           T++ ++
Sbjct: 565 TYNILL 570



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 141/297 (47%), Gaps = 4/297 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  TFS +I+ L    +      L D +           F ++  G  +  +  
Sbjct: 311 SEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVD 370

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A++ F  M   G  P   +Y  ++  L +   LK A R    M   G++P   +   LI
Sbjct: 371 LALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLI 430

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK+ G M++A +I R M   G   D   +  LI+GLCR G++++A  +  +M +   
Sbjct: 431 DGCCKD-GDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGF 489

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   TYT +I+  C+   V+   +L +EM+S G  P V TY++LM+GLCK G    A  
Sbjct: 490 KPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKM 549

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           LL  M++    PN +TY+ LL+G  K G   + V+I +  K  GL  D   Y  +++
Sbjct: 550 LLDAMLNVGVAPNDITYNILLDGHSKHGSSVD-VDIFNSEK--GLVTDYASYTALVN 603


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 211/415 (50%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+ ++++ L        A +LL+++   K +    IF +I     +     DA+ +F +M
Sbjct: 189 TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 248

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y ++++ L    +   A +    M E  I P + + N LI A  K  G 
Sbjct: 249 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK-EGK 307

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A K++ +M  R   PD +TY +L+NG C   ++ +AK++F+ M +K C P VVTY +
Sbjct: 308 FVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNT 367

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI G C+SK VE+   LF EM  +G+  +  TY++L+ GL   G    A ++ + M+S  
Sbjct: 368 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 427

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+I+TYS LL+GLC  GKL++A+E+ D M+   +K D  +Y  +I   C  GK  +  
Sbjct: 428 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 487

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTY 410
           +    + L G+ PN +T+       NT++ GLC K     A+ +   M+      +S TY
Sbjct: 488 DLFCSLSLKGVKPNVVTY-------NTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTY 540

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++LI    + GD   SA ++ E+     + D  T   V   L D R  +   ++L
Sbjct: 541 NTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDML 595



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 200/378 (52%), Gaps = 12/378 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  KM + G EP+  +  ++L       ++  A      M E+G +P   +   LI 
Sbjct: 101 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 160

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L  ++   +A   + R M  RGC P+  TYG ++NGLC+ G    A  L  +ME     
Sbjct: 161 GLFLHNKASEAVALVDR-MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE 219

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VV + ++I+ LC+ + V++A+ LF+EM +KG+ PNV TYSSL+  LC  G  S A +L
Sbjct: 220 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 279

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI K+  PN+VT++ L++   KEGK  EA ++ D M  + + PD   Y  +++ FC 
Sbjct: 280 LSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 339

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
             +  +A    + MV     P+ +T+       NT+++G CK+       +++  M +R 
Sbjct: 340 HDRLDKAKQMFEFMVSKDCFPDVVTY-------NTLIKGFCKSKRVEDGTELFREMSHRG 392

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D++TY++LI      GD   + ++  ++V DG  PD  T+S ++  L +  K+ +A 
Sbjct: 393 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 452

Query: 463 ELLLLELMNKCVEAEVDI 480
           E  + + M K  E ++DI
Sbjct: 453 E--VFDYMQKS-EIKLDI 467



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 215/453 (47%), Gaps = 42/453 (9%)

Query: 48  HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRV 107
           H   T++++I+     +Q   A  LL ++ K   + +     S+  GY    R  DA+ +
Sbjct: 80  HGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVAL 139

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            D+M E G  P   ++ T++  L   N+   A      M + G QP + +  V++  LCK
Sbjct: 140 VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 199

Query: 168 NSGT----------------------------------MDAAFKIFREMPNRGCTPDSYT 193
              T                                  +D A  +F+EM  +G  P+  T
Sbjct: 200 RGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVT 259

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y +LI+ LC  G+  +A +L  +M  K  +P +VT+ +LI+   +     EA +L+++M 
Sbjct: 260 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI 319

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            + ++P++FTY+SL++G C      +A ++ + M+SK   P++VTY+TL+ G CK  +++
Sbjct: 320 KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVE 379

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +  E+   M  +GL  D   Y  +I      G    A     +MV  G+ P+ +T+S+  
Sbjct: 380 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI-- 437

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
                ++ GLC      +A +V+  M+   I +D   Y+++I   CK G +     +   
Sbjct: 438 -----LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 492

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           L L G  P+  T++ +++ L  +R +++A  LL
Sbjct: 493 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 525



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 181/364 (49%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M +    P+   +  +L+ + +  +  +       M+ + I   + + N+LI
Sbjct: 30  DAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILI 89

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  P   T  +L+NG C   +I +A  L  +M     
Sbjct: 90  NCFCRRS-QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY 148

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +T+T+LI+GL       EA+ L + M  +G +PN+ TY  +++GLCK G +  A+ 
Sbjct: 149 RPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALN 208

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M + +   ++V ++T+++ LCK   + +A+ +   M+ +G++P+   Y  +ISC C
Sbjct: 209 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 268

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
             G++ +A+  L +M+   I PN +T+       N ++    K      A ++Y  M  R
Sbjct: 269 SYGRWSDASQLLSDMIEKKINPNLVTF-------NALIDAFVKEGKFVEAEKLYDDMIKR 321

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI  D  TY+SL+  FC    + K+ ++ + +V   C PD  T++ ++      +++   
Sbjct: 322 SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDG 381

Query: 462 AELL 465
            EL 
Sbjct: 382 TELF 385



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 179/332 (53%), Gaps = 4/332 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           + V+ AL +F     +   G R +  T+S +IS L S  ++  A  LL  + ++K +   
Sbjct: 236 RHVDDALNLFKEMETK---GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 292

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             F ++   + +  + ++A +++D M +   +P   +Y +++      ++L  A + +  
Sbjct: 293 VTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEF 352

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M      P V + N LIK  CK+    D   ++FREM +RG   D+ TY TLI GL   G
Sbjct: 353 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGT-ELFREMSHRGLVGDTVTYTTLIQGLFHDG 411

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
               A+++FK+M +    P ++TY+ L++GLC +  +E+A+ +F+ M+   ++ +++ Y+
Sbjct: 412 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 471

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           ++++G+CK G      +L   +  K  +PN+VTY+T+++GLC +  LQEA  +L +MK  
Sbjct: 472 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 531

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           G  P++G Y  +I      G    +A  + EM
Sbjct: 532 GPLPNSGTYNTLIRAHLRDGDKAASAELIREM 563



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 148/294 (50%), Gaps = 8/294 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F  M      P    +  L++ + ++ K      L ++M+       + TY  
Sbjct: 28  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 87

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C+   +  A+ L  +M   G EP++ T SSL++G C G   S A+ L+  M+   
Sbjct: 88  LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 147

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           +RP+ +T++TL++GL    K  EAV ++DRM  +G +P+   YG +++  C  G    A 
Sbjct: 148 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 207

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTY 410
           N L++M    I  +       + I NT++  LCK    + A  ++  M  + I  + +TY
Sbjct: 208 NLLNKMEAAKIEAD-------VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTY 260

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           SSLI+C C  G    +++++ +++     P+  T++A++ A     K  +A +L
Sbjct: 261 SSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKL 314



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 135/270 (50%), Gaps = 9/270 (3%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L NGL  + K+ +A  LF  M      P++V +  L++ + + K  +  + L E+M+   
Sbjct: 19  LRNGLHDM-KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLE 77

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           +   ++TY+ L++  C+    S A+ LL  M+   + P+IVT S+LLNG C   ++ +AV
Sbjct: 78  IVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 137

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            ++D+M   G +PD   +  +I       K  EA   +D MV  G  PN +T+ +     
Sbjct: 138 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV----- 192

Query: 377 NTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             VV GLCK  D + A  +   M    I  D + ++++I   CK   +  +  +  E+  
Sbjct: 193 --VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 250

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G  P+  T+S++++ L    +   A++LL
Sbjct: 251 KGIRPNVVTYSSLISCLCSYGRWSDASQLL 280


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 194/398 (48%), Gaps = 43/398 (10%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F++M      P+   +  +L  + +  Q    F     M   GI P V +LN+LI
Sbjct: 52  DALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILI 111

Query: 163 KALCKNS----------------------------------GTMDAAFKIFREMPNRGCT 188
            + C  +                                  G +  A  +F +M   G  
Sbjct: 112 NSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQ 171

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  TYGTLINGLC++G    A  L + ME   C P VV YTS+I+ LC+ + V EA  L
Sbjct: 172 PNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNL 231

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F +M  +G+ P++FTY+SL+  LC          LL  MI+ +  P++V +ST+++ LCK
Sbjct: 232 FSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK 291

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EGK+ EA +++D M ++G++P+   Y  ++   C   +  EA    D MV  G  PN ++
Sbjct: 292 EGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVIS 351

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       NT++ G CK    ++A  ++  M  + +  +++TY++L+   C  G +  + 
Sbjct: 352 Y-------NTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQDAI 403

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  E+V  G +PD  T+  ++  L  +  + +A  LL
Sbjct: 404 ALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALL 441



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 215/435 (49%), Gaps = 11/435 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ +I  L    +   A  L D++  E        + ++  G  +V     A
Sbjct: 134 GHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 193

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M++  C+P    Y +++  L ++ Q+  AF  +  M   GI P + +   LI +
Sbjct: 194 IRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHS 253

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N         +  +M N    PD   + T+++ LC+ GKI EA ++   M  +   P
Sbjct: 254 LC-NLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEP 312

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +L++G C    ++EA+++F+ M   G  PNV +Y++L++G CK     +A  L 
Sbjct: 313 NVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLF 372

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   PN VTY+TL++  C  G+LQ+A+ +   M   G  PD   Y  ++   C  
Sbjct: 373 EEMCQKELIPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKK 431

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
               EA   L  +    + P+       I+I+  V+ G+C+  +   A  ++ ++ ++ +
Sbjct: 432 SHLDEAMALLKTIEGSNMDPD-------IQIYTIVIDGMCRAGELEAARDIFSNLSSKGL 484

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TY+ +I   C++G + ++ ++  E+  +GC PD  T++ +   L   ++  +A +
Sbjct: 485 RPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQ 544

Query: 464 LLLLELMNKCVEAEV 478
            LL E++ +   A+V
Sbjct: 545 -LLQEMLARGFSADV 558



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 190/398 (47%), Gaps = 29/398 (7%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  V  K+ + G +P   ++ T++  L  E ++  A   +  M   G QP V +   LI 
Sbjct: 123 AFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLIN 182

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G  +AA ++ R M    C PD   Y ++I+ LC+  ++ EA  LF +M  +  S
Sbjct: 183 GLCK-VGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS 241

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P + TYTSLI+ LC     +    L  +M +  + P+V  +S+++D LCK G  ++A ++
Sbjct: 242 PDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDV 301

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           + MMI +   PN+VTY+ L++G C + ++ EAV++ D M   G  P+   Y  +I+ +C 
Sbjct: 302 VDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCK 361

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------------IHNTVVQG-------- 382
           I +  +A    +EM    + PN +T++  +               H  V  G        
Sbjct: 362 IQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHGQIPDLATY 421

Query: 383 ------LC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
                 LC K+  + A  +  ++   ++  D   Y+ +I   C+ G++  +  I   L  
Sbjct: 422 RILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSS 481

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            G  P+  T++ ++  L  R  + +A +L +    N C
Sbjct: 482 KGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGC 519



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 168/351 (47%), Gaps = 5/351 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           ++ V +A  +F     +   G   D  T++ +I  L +  +++    LL+++   K    
Sbjct: 222 DRQVTEAFNLFSKMVGQ---GISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPD 278

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
             IF ++     +  +  +A  V D M   G EP   +Y  ++     ++++  A + + 
Sbjct: 279 VVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFD 338

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   G  P V S N LI   CK    MD A  +F EM  +   P++ TY TL++  C +
Sbjct: 339 TMVHNGYAPNVISYNTLINGYCKIQ-RMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHV 396

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G++ +A  LF EM      P + TY  L++ LC+   ++EAM L + +    ++P++  Y
Sbjct: 397 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 456

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + ++DG+C+ G    A ++   + SK  RPN+ TY+ ++NGLC+ G L EA ++   M  
Sbjct: 457 TIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG 516

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
            G  PD   Y  I        +   A   L EM+  G + +  T +L + +
Sbjct: 517 NGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEM 567



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 152/325 (46%), Gaps = 16/325 (4%)

Query: 150 GIQPCVASLNVLIKALCKNS--------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
           G   CV SL     +L  N          T+D A   F  M +    P +  +  L+  +
Sbjct: 20  GFGTCVLSLPPYFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSI 79

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
            +  +      L  +M++    P V T   LIN  C    +  A  +  ++   G +P+ 
Sbjct: 80  AKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDT 139

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            T+++L+ GLC  G    A+ L   MI +  +PN+VTY TL+NGLCK G    A+ +L  
Sbjct: 140 ATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRS 199

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M+    +PD  +Y  II   C   +  EA N   +MV  GI+P+  T++       +++ 
Sbjct: 200 MEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYT-------SLIH 252

Query: 382 GLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            LC     +     L+ M N  I  D + +S+++   CK+G I ++  +VD +++ G  P
Sbjct: 253 SLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEP 312

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
           +  T++A+M     + +M +A ++ 
Sbjct: 313 NVVTYNALMDGHCLQSEMDEAVKVF 337


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 210/405 (51%), Gaps = 12/405 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D ++++++IS    + +   A  +LDR+       T D  L      G++ +   AM+V 
Sbjct: 148 DVTSYNVLISGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQ---AMQVL 204

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +  +  C P   +   ++    +E+ +  A + +  MR  G +P V + NVLIK  CK 
Sbjct: 205 GRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCK- 263

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D A +  +++P+ GC PD  ++  ++  LC  G+  +A +L   M  K C P+VVT
Sbjct: 264 GGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVT 323

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  LIN LCQ   + +A+ + E M   G  PN  +++ L+ G C G    +A+E L++M+
Sbjct: 324 FNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMV 383

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+   P+IVTY+ LL  LCK+GK+ +AV IL ++  +G  P    Y  +I     +GK +
Sbjct: 384 SRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAE 443

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDS 407
            A   L+EM   G+ P+ +T +       +VV GL +    R A + +  ++  +I  ++
Sbjct: 444 LAVELLEEMCYKGLKPDLITCT-------SVVGGLSREGKVREAMKFFHYLKRFAIRPNA 496

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             Y+S+IT  CK      +   + ++V  GC P E T++ ++  +
Sbjct: 497 FIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGI 541



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 181/364 (49%), Gaps = 12/364 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +  R  + M   G  P   +   ++    +  + K A +    + E G    V S NVLI
Sbjct: 97  EGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLI 156

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK SG ++ A ++   M   G +P++ TY  ++  LC  GK+ +A ++        C
Sbjct: 157 SGYCK-SGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKC 212

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVT T LI+  C+   V +AM+LF EMR+KG +P+V TY+ L+ G CKGG   +A+ 
Sbjct: 213 YPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIR 272

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L+ + S   +P++++++ +L  LC  G+  +A+++L  M  +G  P    +  +I+  C
Sbjct: 273 FLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLC 332

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G   +A N L+ M   G TPN        R  N ++QG C     +RA +    M +R
Sbjct: 333 QKGLLGKALNVLEMMPKHGHTPNS-------RSFNPLIQGFCNGKGIDRAIEYLEIMVSR 385

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D +TY+ L+T  CK G +  +  I+ +L   GC P   +++ V+  L    K   A
Sbjct: 386 GCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELA 445

Query: 462 AELL 465
            ELL
Sbjct: 446 VELL 449



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 193/377 (51%), Gaps = 12/377 (3%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++ R + ++ R  +A ++   ++E G      SY  +++   +  +++ A R    M   
Sbjct: 119 ALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDRM--- 175

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G+ P  A+ + ++ +LC + G +  A ++        C PD  T   LI+  C+   + +
Sbjct: 176 GVSPNAATYDAVLCSLC-DRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQ 234

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +LF EM  K C P VVTY  LI G C+   ++EA+R  +++ S G +P+V +++ ++ 
Sbjct: 235 AMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILR 294

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            LC GG    AM+LL  M+ K   P++VT++ L+N LC++G L +A+ +L+ M   G  P
Sbjct: 295 SLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTP 354

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
           ++  +  +I  FC+      A  +L+ MV  G  P+ +T+       N ++  LCK    
Sbjct: 355 NSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTY-------NILLTALCKDGKV 407

Query: 390 RAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
               V LS + ++  S   ++Y+++I    K G    +  +++E+   G  PD  T ++V
Sbjct: 408 DDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSV 467

Query: 449 MTALWDRRKMRQAAELL 465
           +  L    K+R+A +  
Sbjct: 468 VGGLSREGKVREAMKFF 484



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 175/356 (49%), Gaps = 12/356 (3%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-- 82
           E  V +A+ +F+    +   G + D  T++++I       +   A   L ++    C   
Sbjct: 229 ESGVGQAMKLFNEMRNK---GCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPD 285

Query: 83  -ITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
            I+ ++ L S+C G     R +DAM++   M   GC P+  ++  ++  L ++  L  A 
Sbjct: 286 VISHNMILRSLCSG----GRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKAL 341

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
                M + G  P   S N LI+  C   G +D A +    M +RGC PD  TY  L+  
Sbjct: 342 NVLEMMPKHGHTPNSRSFNPLIQGFCNGKG-IDRAIEYLEIMVSRGCYPDIVTYNILLTA 400

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC+ GK+ +A  +  ++ +K CSP++++Y ++I+GL +    E A+ L EEM  KG++P+
Sbjct: 401 LCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPD 460

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           + T +S++ GL + G   +AM+    +     RPN   Y++++ GLCK  +   A++ L 
Sbjct: 461 LITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLA 520

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            M  +G KP    Y  +I      G  ++A+   +E+   G+    L   + + + 
Sbjct: 521 DMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLVKRSLVEKVSLEVE 576



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 127/244 (52%), Gaps = 11/244 (4%)

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           L ++  +EE  R  E M +KG  P+V   ++L+   CK G +  A +++ ++       +
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           + +Y+ L++G CK G+++EA+ +LDRM   G+ P+A  Y  ++   CD GK ++A   L 
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
             +     P+ +T ++       ++   CK +   +A +++  MRN+    D +TY+ LI
Sbjct: 206 RQLQSKCYPDVVTCTV-------LIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLI 258

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             FCK G + ++ R + +L   GC PD  + + ++ +L    +   A +LL   L   C+
Sbjct: 259 KGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCL 318

Query: 475 EAEV 478
            + V
Sbjct: 319 PSVV 322


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 233/463 (50%), Gaps = 14/463 (3%)

Query: 6   MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ 65
           M  +   ++   VL+L+++EK+   A  +FDSAT     G+ H    +  ++ +L  A  
Sbjct: 1   MVVFPKSLSPKHVLKLLKSEKNPRAAFALFDSATRH--PGYAHSAVVYHHILRRLSEARM 58

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYI 124
                 +++ +  ++C   ED+ LS+ + YG+   P  A+ VF +M+E FGCEP  +SY 
Sbjct: 59  VTHVGRIVELIRSQECKCDEDVALSVIKTYGKNSMPDRALDVFKRMREIFGCEPGIRSYN 118

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
           T+L   VE  Q       + +    G+ P + + NVLIK  CK     + A      M  
Sbjct: 119 TLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKK-EFEKARGFLNWMWK 177

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
            G  PD ++Y T+IN L + GK+ +A ELF EM  +  +P V  Y  LI+G  + K  + 
Sbjct: 178 EGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKM 237

Query: 245 AMRLFEE-MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           AM+L+++ +    V PNV T++ ++ GL K G     +++   M       ++ TYS+L+
Sbjct: 238 AMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLI 297

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +GLC EG + +A  + + +  +    D   Y  ++  FC  GK +E+      + L  I 
Sbjct: 298 HGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKES------LELWRIM 351

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
             R   S++I  +N +++GL +    + A  ++  M  +  + D+ TY   I   C  G 
Sbjct: 352 EQRN--SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGY 409

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++K+  ++ E+   G   D   +++++  L  +R++ +A+ L+
Sbjct: 410 VNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLV 452



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 215/468 (45%), Gaps = 47/468 (10%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           EKD   A+ ++D    +  +    +  T ++MIS L    +      + DR+ + + +  
Sbjct: 232 EKDHKMAMQLWDKLLED--SSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKD 289

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + S+  G         A  VF+++ E        +Y T+L       ++K +   +R
Sbjct: 290 LYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWR 349

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M +      + S N+LIK L +N G +D A  I+R MP +G   D+ TYG  I+GLC  
Sbjct: 350 IMEQRN-SVNIVSYNILIKGLLEN-GKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVN 407

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE------ 258
           G + +A  + +E+E+K     V  Y S+I+ LC+ + +EEA  L +EM   GVE      
Sbjct: 408 GYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVC 467

Query: 259 -----------------------------PNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
                                        P V +Y+ L+ GLC+ G   +A   ++ M+ 
Sbjct: 468 NALIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLE 527

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              +P++ TYS LL GLC++ K++ A+E+  +    GL+PD  ++  +I   C +GK  +
Sbjct: 528 NGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDD 587

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSL 408
           A   +  M     T N +T+       NT+++G  K  D NRA  ++  M    +  D +
Sbjct: 588 AMTVMANMEHRNCTANLVTY-------NTLMEGYFKVRDSNRATVIWGYMYKMGLQPDII 640

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
           +Y++++   C    +  +    D+    G  P   TW+ ++ A+ +R+
Sbjct: 641 SYNTILKGLCLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRAVVNRK 688



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 212/437 (48%), Gaps = 20/437 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLDAMRVFD 109
           T++++I       +F  A   L+ + KE      D+F   ++     +  +  DA+ +FD
Sbjct: 151 TYNVLIKMSCKKKEFEKARGFLNWMWKE--GFKPDVFSYSTVINDLAKTGKLDDALELFD 208

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLIKALCKN 168
           +M E    P    Y  ++   ++E   K+A + + + + +  + P V + N++I  L K 
Sbjct: 209 EMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSK- 267

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D   KI+  M       D YTY +LI+GLC  G + +A+ +F E+  +     VVT
Sbjct: 268 CGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVT 327

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +++ G C+   ++E++ L+  M  +    N+ +Y+ L+ GL + G   +A  + ++M 
Sbjct: 328 YNTMLGGFCRCGKIKESLELWRIMEQRN-SVNIVSYNILIKGLLENGKIDEATMIWRLMP 386

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +K +  +  TY   ++GLC  G + +A+ ++  ++ +G   D   Y  II C C   + +
Sbjct: 387 AKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLE 446

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS---V 405
           EA+N + EM   G+  N         + N ++ GL +   +R     L MR    +    
Sbjct: 447 EASNLVKEMSKHGVELNS-------HVCNALIGGLIR--DSRLSDASLLMRGMGKNGCLP 497

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             ++Y+ LI   C+ G   +++  V E++ +G  PD  T+S ++  L   RK+  A E L
Sbjct: 498 TVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELALE-L 556

Query: 466 LLELMNKCVEAEVDIQN 482
             + +   +E +V + N
Sbjct: 557 WHQFLQSGLEPDVMMHN 573


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 210/413 (50%), Gaps = 17/413 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLL-DRVNKEKCDITEDI--FLSICRGYGRVHR 100
           +G+R +N   + ++  L  A + R A D+L  R+ +  C  T D+  + ++ +G+    R
Sbjct: 123 SGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGC--TPDVVSYNTLLKGFCNEKR 180

Query: 101 PLDAMRVFDKMKEF---GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
             +A+ +   M +     C P   SY TV+     E Q+  A+  +  M + GIQP V +
Sbjct: 181 AEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVT 240

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
              +I  LCK +  +D A  +F++M ++G  PD+ TY  LI+G   +GK  E   + +EM
Sbjct: 241 YTTVIDGLCK-AQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEM 299

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P   TY SL+N LC +    EA   F+ M  KG++PNV  Y  L+ G    G  
Sbjct: 300 SAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGAL 359

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           S+  +LL +M+     P+   ++ +     K+  + EA+ I ++MK QGL PD   +G +
Sbjct: 360 SEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGAL 419

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I   C +G+  +A    ++M+  G+ PN       I + N++V GLC  D   +A + Y 
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVAPN-------IFVFNSLVYGLCTVDKWEKAKEFYF 472

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            M N+ I  D + +++++   C KG + K+ R++D +   G  PD  +++ ++
Sbjct: 473 EMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLI 525



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 201/411 (48%), Gaps = 36/411 (8%)

Query: 107 VFDKM-KEFGCEPTPK--SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +F++M +E   + TP   +Y  ++       +L+  F  +  + + G +     +N L+K
Sbjct: 78  LFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLK 137

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM---ETK 220
            LC      +A   + + MP  GCTPD  +Y TL+ G C   +  EA EL   M   + +
Sbjct: 138 GLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGR 197

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
           +C P VV+Y ++ING      V++A  LF EM  +G++PNV TY++++DGLCK     +A
Sbjct: 198 SCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRA 257

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             + Q MI K  +P+  TY+ L++G    GK +E V +L+ M   GLKPD   YG +++ 
Sbjct: 258 EGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNY 317

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT--------------VVQGLC-- 384
            C+ G+ +EA  F D M+  GI PN   + + I  + T              V  GL   
Sbjct: 318 LCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377

Query: 385 -------------KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
                        K   + A  ++  M+ + +S D + + +LI   CK G +  +    +
Sbjct: 378 HHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFN 437

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +++ +G  P+   +++++  L    K  +A E    E++N+ +  +V   N
Sbjct: 438 QMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKE-FYFEMLNQGIRPDVVFFN 487



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/516 (23%), Positives = 227/516 (43%), Gaps = 66/516 (12%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           ++ A V+     E  V+KA  +F         G + +  T++ +I  L  A     AE +
Sbjct: 204 VSYATVINGFFTEGQVDKAYNLFLEMMDR---GIQPNVVTYTTVIDGLCKAQVVDRAEGV 260

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
             ++  +      D +  +  GY  + +  + +R+ ++M   G +P   +Y ++L  L  
Sbjct: 261 FQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCN 320

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG---------------------- 170
             + + A  F+  M   GI+P VA   +LI                              
Sbjct: 321 NGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHI 380

Query: 171 ------------TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
                        +D A  IF +M  +G +PD   +G LI+ LC+LG++ +A   F +M 
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMM 440

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            +  +P +  + SL+ GLC     E+A   + EM ++G+ P+V  +++++  LC  G   
Sbjct: 441 NEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVM 500

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A  L+ +M     RP++++Y+TL+ G C  G++ EA + LD M   GLKPD   Y  ++
Sbjct: 501 KAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLL 560

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWS--LH------------------------ 372
             +C  G+  +A     EM+  GITP  +T+S  LH                        
Sbjct: 561 HGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQ 620

Query: 373 --IRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
             I I+N ++ GL K +  + AF+++ S+ ++   ++  T++ +I    K G    +  +
Sbjct: 621 WNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHL 680

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              +   G +PD  T+  +   L +   + +  +L 
Sbjct: 681 FATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLF 716



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 187/403 (46%), Gaps = 12/403 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++A+ IF+    +   G   D   F  +I  L    +   A    +++  E       +
Sbjct: 394 IDEAMHIFNKMKQQ---GLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFV 450

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F S+  G   V +   A   + +M   G  P    + T+L  L  + Q+  A R    M 
Sbjct: 451 FNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLME 510

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +G +P V S   LI   C   G +D A K    M + G  PD +TY TL++G CR G+I
Sbjct: 511 RVGTRPDVISYTTLIGGHCL-VGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRI 569

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  +F+EM     +P VVTY+++++GL  ++   EA  L+  M + G + N++ Y+ +
Sbjct: 570 DDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNII 629

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++GL K  C  +A +L Q + SK  +  I T++ ++  L K G+ ++A+ +   +   GL
Sbjct: 630 LNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGL 689

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KT 386
            PD   Y  I     + G  +E  +    M   G TPN        R+ N +V+ L  + 
Sbjct: 690 VPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNS-------RMLNALVRRLLHRG 742

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
           D  RA      +  ++ S+++ T + LI+   +    H +  +
Sbjct: 743 DITRAGAYLSKLDEKNFSLEASTTAMLISLLSRDEYHHHATSL 785



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 119/280 (42%), Gaps = 1/280 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  +++ +I       +   A   LD +        E  + ++  GY R  R  DA
Sbjct: 513 GTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDA 572

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             VF +M   G  P   +Y T+L  L    +   A   Y +M   G Q  +   N+++  
Sbjct: 573 YGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNG 632

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L KN+  +D AFK+F+ + ++    +  T+  +I  L + G+  +A  LF  + +    P
Sbjct: 633 LSKNN-CVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVP 691

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY  +   L +   +EE   LF  M   G  PN    ++L+  L   G  ++A   L
Sbjct: 692 DVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYL 751

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
             +  K       T + L++ L ++     A  + ++ ++
Sbjct: 752 SKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPEKYRV 791


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 173/314 (55%), Gaps = 9/314 (2%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P   +   +++ LCK +  +D A     EM  RG  PD++ Y  +++GLC+  K+ EA+ 
Sbjct: 7   PDALTYGPIVERLCK-TKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARL 65

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           LF++M  +  +P VVTY +LINGLC++  +E A  LF+EM  KG  P   +Y++L+DG C
Sbjct: 66  LFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFC 125

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K      A ++   M+     PN+VTY+TL++GL K GK+Q A E+LD M  +G+ P+  
Sbjct: 126 KKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVA 185

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            Y  +I  FC + +  EA   L++MV  GI P  +T+       N ++  LC+ D    A
Sbjct: 186 TYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTY-------NILLNSLCRADKLEDA 238

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           F+++  M  R      +TY++L+   C    +  + R+  E++  GC PD  T+  +   
Sbjct: 239 FKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWG 298

Query: 452 LWDRRKMRQAAELL 465
           L    K+ +A EL+
Sbjct: 299 LTRAGKVHEAQELM 312



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 9/319 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   +Y  ++  L +  ++  A      M   GI+P     N ++  LC+     +A   
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARL- 65

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +F +M  +   P+  TY TLINGLC+  +I  A ELFKEM  K   PT V+Y +LI+G C
Sbjct: 66  LFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFC 125

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + K +  A  +F++M      PNV TY++L+DGL K G    A E+L  M+ K   PN+ 
Sbjct: 126 KKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVA 185

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TYS L++G CK  ++ EA ++L++M  QG+ P    Y  +++  C   K ++A      M
Sbjct: 186 TYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM 245

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
                 P  +T+       NT+++ LC     + A ++Y  M  +    D++TY +L   
Sbjct: 246 AQRRCHPTVVTY-------NTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWG 298

Query: 417 FCKKGDIHKSARIVDELVL 435
             + G +H++  +++++ L
Sbjct: 299 LTRAGKVHEAQELMEKMKL 317



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 136/262 (51%), Gaps = 1/262 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +F+KM +    P   +Y T++  L +  +++ A+  ++ M   G  P   S N LI
Sbjct: 62  EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 121

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK    + AA  +F +M    C P+  TY TLI+GL + GK+  A E+   M  K  
Sbjct: 122 DGFCKKKDLV-AAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 180

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P V TY+ LI+G C+ + V+EA +L E+M ++G+ P V TY+ L++ LC+      A +
Sbjct: 181 TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFK 240

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M  +R  P +VTY+TLL  LC   +L  A  +   M  +G  PDA  Y  +     
Sbjct: 241 LFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLT 300

Query: 343 DIGKYQEAANFLDEMVLGGITP 364
             GK  EA   +++M L    P
Sbjct: 301 RAGKVHEAQELMEKMKLTKRNP 322



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 159/317 (50%), Gaps = 4/317 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +++ +   K ++ AL   +        G + D   ++ ++S L    +   A  L
Sbjct: 10  LTYGPIVERLCKTKRIDDALATVEEMATR---GIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            +++ K++ +     + ++  G  +  R   A  +F +M   G  PT  SY T++    +
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L  A   +  M      P V +   LI  L K SG + AA ++   M  +G TP+  
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSK-SGKVQAAAEVLDGMVKKGVTPNVA 185

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY  LI+G C++ ++ EA +L ++M T+  +PTVVTY  L+N LC++  +E+A +LF  M
Sbjct: 186 TYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM 245

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +   P V TY++L+  LC       A  L   MI+K   P+ +TY TL  GL + GK+
Sbjct: 246 AQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKV 305

Query: 313 QEAVEILDRMKLQGLKP 329
            EA E++++MKL    P
Sbjct: 306 HEAQELMEKMKLTKRNP 322



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 8/147 (5%)

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           PDA  YG I+   C   +  +A   ++EM   GI P+         I+N V+ GLC+ + 
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAF-------IYNFVLSGLCQEEK 59

Query: 389 -NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
              A  ++  M  + I+ + +TY++LI   CK   I  +  +  E+   G +P E +++ 
Sbjct: 60  VEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 119

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCV 474
           ++     ++ +  A ++    + + CV
Sbjct: 120 LIDGFCKKKDLVAAKDVFDKMVRSNCV 146


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 211/415 (50%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+ ++++ L        A +LL+++   K +    IF +I     +     DA+ +F +M
Sbjct: 227 TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 286

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y ++++ L    +   A +    M E  I P + + N LI A  K  G 
Sbjct: 287 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK-EGK 345

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A K++ +M  R   PD +TY +L+NG C   ++ +AK++F+ M +K C P VVTY +
Sbjct: 346 FVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNT 405

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI G C+SK VE+   LF EM  +G+  +  TY++L+ GL   G    A ++ + M+S  
Sbjct: 406 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+I+TYS LL+GLC  GKL++A+E+ D M+   +K D  +Y  +I   C  GK  +  
Sbjct: 466 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTY 410
           +    + L G+ PN +T+       NT++ GLC K     A+ +   M+      +S TY
Sbjct: 526 DLFCSLSLKGVKPNVVTY-------NTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTY 578

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++LI    + GD   SA ++ E+     + D  T   V   L D R  +   ++L
Sbjct: 579 NTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDML 633



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 200/378 (52%), Gaps = 12/378 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  KM + G EP+  +  ++L       ++  A      M E+G +P   +   LI 
Sbjct: 139 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 198

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L  ++   +A   + R M  RGC P+  TYG ++NGLC+ G    A  L  +ME     
Sbjct: 199 GLFLHNKASEAVALVDR-MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE 257

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VV + ++I+ LC+ + V++A+ LF+EM +KG+ PNV TYSSL+  LC  G  S A +L
Sbjct: 258 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 317

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI K+  PN+VT++ L++   KEGK  EA ++ D M  + + PD   Y  +++ FC 
Sbjct: 318 LSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 377

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
             +  +A    + MV     P+ +T+       NT+++G CK+       +++  M +R 
Sbjct: 378 HDRLDKAKQMFEFMVSKDCFPDVVTY-------NTLIKGFCKSKRVEDGTELFREMSHRG 430

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D++TY++LI      GD   + ++  ++V DG  PD  T+S ++  L +  K+ +A 
Sbjct: 431 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490

Query: 463 ELLLLELMNKCVEAEVDI 480
           E  + + M K  E ++DI
Sbjct: 491 E--VFDYMQKS-EIKLDI 505



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 215/453 (47%), Gaps = 42/453 (9%)

Query: 48  HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRV 107
           H   T++++I+     +Q   A  LL ++ K   + +     S+  GY    R  DA+ +
Sbjct: 118 HGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVAL 177

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            D+M E G  P   ++ T++  L   N+   A      M + G QP + +  V++  LCK
Sbjct: 178 VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 237

Query: 168 NSGT----------------------------------MDAAFKIFREMPNRGCTPDSYT 193
              T                                  +D A  +F+EM  +G  P+  T
Sbjct: 238 RGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVT 297

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y +LI+ LC  G+  +A +L  +M  K  +P +VT+ +LI+   +     EA +L+++M 
Sbjct: 298 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI 357

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            + ++P++FTY+SL++G C      +A ++ + M+SK   P++VTY+TL+ G CK  +++
Sbjct: 358 KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVE 417

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +  E+   M  +GL  D   Y  +I      G    A     +MV  G+ P+ +T+S+  
Sbjct: 418 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI-- 475

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
                ++ GLC      +A +V+  M+   I +D   Y+++I   CK G +     +   
Sbjct: 476 -----LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 530

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           L L G  P+  T++ +++ L  +R +++A  LL
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 563



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 181/364 (49%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M +    P+   +  +L+ + +  +  +       M+ + I   + + N+LI
Sbjct: 68  DAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILI 127

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  P   T  +L+NG C   +I +A  L  +M     
Sbjct: 128 NCFCRRS-QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY 186

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +T+T+LI+GL       EA+ L + M  +G +PN+ TY  +++GLCK G +  A+ 
Sbjct: 187 RPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALN 246

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M + +   ++V ++T+++ LCK   + +A+ +   M+ +G++P+   Y  +ISC C
Sbjct: 247 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 306

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
             G++ +A+  L +M+   I PN +T+       N ++    K      A ++Y  M  R
Sbjct: 307 SYGRWSDASQLLSDMIEKKINPNLVTF-------NALIDAFVKEGKFVEAEKLYDDMIKR 359

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI  D  TY+SL+  FC    + K+ ++ + +V   C PD  T++ ++      +++   
Sbjct: 360 SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDG 419

Query: 462 AELL 465
            EL 
Sbjct: 420 TELF 423



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 179/332 (53%), Gaps = 4/332 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           + V+ AL +F     +   G R +  T+S +IS L S  ++  A  LL  + ++K +   
Sbjct: 274 RHVDDALNLFKEMETK---GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 330

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             F ++   + +  + ++A +++D M +   +P   +Y +++      ++L  A + +  
Sbjct: 331 VTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEF 390

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M      P V + N LIK  CK+    D   ++FREM +RG   D+ TY TLI GL   G
Sbjct: 391 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGT-ELFREMSHRGLVGDTVTYTTLIQGLFHDG 449

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
               A+++FK+M +    P ++TY+ L++GLC +  +E+A+ +F+ M+   ++ +++ Y+
Sbjct: 450 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 509

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           ++++G+CK G      +L   +  K  +PN+VTY+T+++GLC +  LQEA  +L +MK  
Sbjct: 510 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 569

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           G  P++G Y  +I      G    +A  + EM
Sbjct: 570 GPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 148/294 (50%), Gaps = 8/294 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F  M      P    +  L++ + ++ K      L ++M+       + TY  
Sbjct: 66  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C+   +  A+ L  +M   G EP++ T SSL++G C G   S A+ L+  M+   
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           +RP+ +T++TL++GL    K  EAV ++DRM  +G +P+   YG +++  C  G    A 
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTY 410
           N L++M    I  +       + I NT++  LCK    + A  ++  M  + I  + +TY
Sbjct: 246 NLLNKMEAAKIEAD-------VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTY 298

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           SSLI+C C  G    +++++ +++     P+  T++A++ A     K  +A +L
Sbjct: 299 SSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKL 352



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 135/270 (50%), Gaps = 9/270 (3%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L NGL  + K+ +A  LF  M      P++V +  L++ + + K  +  + L E+M+   
Sbjct: 57  LRNGLHDM-KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLE 115

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           +   ++TY+ L++  C+    S A+ LL  M+   + P+IVT S+LLNG C   ++ +AV
Sbjct: 116 IVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 175

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            ++D+M   G +PD   +  +I       K  EA   +D MV  G  PN +T+ +     
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV----- 230

Query: 377 NTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             VV GLCK  D + A  +   M    I  D + ++++I   CK   +  +  +  E+  
Sbjct: 231 --VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G  P+  T+S++++ L    +   A++LL
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLL 318


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 209/411 (50%), Gaps = 12/411 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           + ++++  L+SA + + A    D ++     +T   + ++  GY       +A+++ D+M
Sbjct: 257 SHNILLKALLSAGRLKDACQHFDEMSSPPDVVT---YGTMVHGYCVRGELENAVKLLDEM 313

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G E     Y +V+A+L  + Q+  A R    M   G+         +I   C + G 
Sbjct: 314 AAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFC-SKGD 372

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           + AA ++F EM  RG   D  T+  LINGLCR G++ EA  + +EM  K     VVTYT 
Sbjct: 373 LAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTV 432

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G C+  ++ EA R+  EM  + V PNV TY++L DGLCK G    A ELL  M +K 
Sbjct: 433 LIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKG 492

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              N+ TY++L+NGLCK G L++A+ I+  M+  G + D   Y  +I   C  G++  A 
Sbjct: 493 LELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAH 552

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTY 410
           N L EM+  GI P+       I  +N ++ G C +      +  L  M  +++  + +TY
Sbjct: 553 NMLQEMLDKGIKPS-------IATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTY 605

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +SL+  +C   ++  +  I   +      P+E T++ ++      R M++A
Sbjct: 606 NSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEA 656



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 196/382 (51%), Gaps = 15/382 (3%)

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           + +I L      GR+    DA + FD+M      P   +Y T++       +L+ A +  
Sbjct: 257 SHNILLKALLSAGRLK---DACQHFDEMSS---PPDVVTYGTMVHGYCVRGELENAVKLL 310

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M   G++        +I  LC N G +  A ++  +M   G   D+  + T+I+G C 
Sbjct: 311 DEMAAKGLESNATVYTSVIALLC-NKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCS 369

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G +  A+ LF+EM+ +  +   VT+T+LINGLC++  ++EA R+ +EM  KG++ +V T
Sbjct: 370 KGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVT 429

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y+ L+DG CK G   +A  +   M+ +R  PN+VTY+ L +GLCK+G ++ A E+L  M 
Sbjct: 430 YTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMC 489

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            +GL+ +   Y  +I+  C  G  ++A   + EM   G   +  T++       T++  L
Sbjct: 490 NKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYT-------TLIDTL 542

Query: 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK+ + +RA  +   M ++ I     TY+ L+  FC  G +    ++++ ++     P+ 
Sbjct: 543 CKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNV 602

Query: 443 GTWSAVMTALWDRRKMRQAAEL 464
            T++++M      + M+   E+
Sbjct: 603 VTYNSLMKQYCIDKNMKSTTEI 624



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 201/434 (46%), Gaps = 12/434 (2%)

Query: 1   MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
           M  K +   +T  TS  V+ L+  +  V+ AL + +  T    +G   D   F+ +IS  
Sbjct: 313 MAAKGLESNATVYTS--VIALLCNKGQVSDALRVLEDMTM---HGVALDAVVFTTVISGF 367

Query: 61  VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
            S      A  L + + K           ++  G  R     +A RV  +M + G +   
Sbjct: 368 CSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDV 427

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
            +Y  ++    +   +  AFR +  M    + P V +   L   LCK  G + AA ++  
Sbjct: 428 VTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQ-GDVRAANELLH 486

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           EM N+G   + YTY +LINGLC+ G + +A  +  EME       V TYT+LI+ LC+S 
Sbjct: 487 EMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSG 546

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
             + A  + +EM  KG++P++ TY+ LM+G C  G      +LL+ M+ K  RPN+VTY+
Sbjct: 547 EFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYN 606

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           +L+   C +  ++   EI   M  Q + P+   Y  +I   C     +EA  F  EM+  
Sbjct: 607 SLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEK 666

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           G+     ++S  IR+ N       K   + A   +  MRN  ++ +   YS  +     +
Sbjct: 667 GLRLTASSYSALIRLLNK------KKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNE 720

Query: 421 GDIHKSARIVDELV 434
            ++  +  + DELV
Sbjct: 721 DNLESTITLCDELV 734



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 193/382 (50%), Gaps = 21/382 (5%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           L +  +  +++++G  P+P+S   VL+ L     L  A   +R + +      V S N+L
Sbjct: 210 LPSAELLRRLRQYGLSPSPESCNAVLSRL----PLDEAIALFRELPDKN----VCSHNIL 261

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +KAL  ++G +  A + F EM      PD  TYGT+++G C  G++  A +L  EM  K 
Sbjct: 262 LKALL-SAGRLKDACQHFDEM---SSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKG 317

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
                  YTS+I  LC    V +A+R+ E+M   GV  +   +++++ G C  G  + A 
Sbjct: 318 LESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAAR 377

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            L + M  +    + VT++ L+NGLC+ G+L+EA  +L  M  +GL  D   Y  +I  +
Sbjct: 378 RLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGY 437

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRN 400
           C  G   EA    +EMV   + PN +T++        +  GLCK    RA    L  M N
Sbjct: 438 CKRGNMVEAFRVHNEMVGRRVAPNVVTYT-------ALSDGLCKQGDVRAANELLHEMCN 490

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + + ++  TY+SLI   CK G++ ++ RI+ E+   G   D  T++ ++  L    +  +
Sbjct: 491 KGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDR 550

Query: 461 AAELLLLELMNKCVEAEVDIQN 482
           A   +L E+++K ++  +   N
Sbjct: 551 AHN-MLQEMLDKGIKPSIATYN 571


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/408 (31%), Positives = 206/408 (50%), Gaps = 44/408 (10%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVE-ENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           VF KM   G  P  K+   VL +L + +N + +A   Y  M E GI P V + N ++ + 
Sbjct: 153 VFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSF 212

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK  G +  A ++  +M   GC+P+  TY  L+NGL   G++ +AKEL ++M       +
Sbjct: 213 CK-KGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVS 271

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           V TY  LI G C+   +EEA RL EEM S+G  P V TY+++M GLCK G  S A +LL 
Sbjct: 272 VYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLD 331

Query: 286 MMISK--------------------------------RHR---PNIVTYSTLLNGLCKEG 310
           +M++K                                R+R   P++VTY+TL++GLC+ G
Sbjct: 332 VMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLG 391

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L  A+ + D M   G  PD   +   +  FC +G    A    DEM+  G+ P+R  + 
Sbjct: 392 DLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYI 451

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
             I      V  L   DP++AF +   M  R    D +TY+  I    K G++ +++ +V
Sbjct: 452 TRI------VGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELV 505

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            +++ +G +PD  T+++++ A      +R+ A  L LE+++K +   V
Sbjct: 506 KKMLYNGLVPDHVTYTSIIHAHLMAGHLRK-ARALFLEMLSKGIFPSV 552



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 202/413 (48%), Gaps = 13/413 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRPLDAMRVF 108
           T++ M+         + A  LL ++    C   D+T ++ ++     G + +   A  + 
Sbjct: 204 TYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQ---AKELI 260

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M   G E +  +Y  ++    E+ Q++ A R    M   G  P V + N ++  LCK 
Sbjct: 261 QDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCK- 319

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A K+   M N+   PD  +Y TLI G  RLG I EA  LF E+  ++ +P+VVT
Sbjct: 320 WGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVT 379

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI+GLC+   ++ AMRL +EM   G +P+VFT+++ + G CK G    A EL   M+
Sbjct: 380 YNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEML 439

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           ++  +P+   Y T + G  K G   +A  + + M  +G  PD   Y   I     +G  +
Sbjct: 440 NRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLK 499

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL 408
           EA+  + +M+  G+ P+ +T++  I  H      L      +A  ++L M ++ I    +
Sbjct: 500 EASELVKKMLYNGLVPDHVTYTSIIHAH------LMAGHLRKARALFLEMLSKGIFPSVV 553

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           TY+ LI  +  +G +  +     E+   G  P+  T++A++  L   RKM QA
Sbjct: 554 TYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQA 606



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 217/451 (48%), Gaps = 30/451 (6%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   ++ T++++++ L  + +   A++L+  + +   +++   +  + RGY    +  
Sbjct: 230 AMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIE 289

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A R+ ++M   G  PT  +Y T++  L +  ++  A +    M    + P + S N LI
Sbjct: 290 EASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLI 349

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               +  G +  AF +F E+  R   P   TY TLI+GLCRLG +  A  L  EM     
Sbjct: 350 YGYTR-LGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGP 408

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V T+T+ + G C+  ++  A  LF+EM ++G++P+ F Y + + G  K G  S+A  
Sbjct: 409 DPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFG 468

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M+++   P+++TY+  ++GL K G L+EA E++ +M   GL PD   Y  II    
Sbjct: 469 MQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHL 528

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIR---------------------------- 374
             G  ++A     EM+  GI P+ +T+++ I                             
Sbjct: 529 MAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVI 588

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            +N ++ GLCK    ++A+  +  M+ + IS +  TY+ LI   C  G   ++ R+  ++
Sbjct: 589 TYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDM 648

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +     PD  T  +++  L    K+     L
Sbjct: 649 LDREIQPDSCTHRSLLKHLNKDYKLHVVRHL 679


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 220/425 (51%), Gaps = 10/425 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ANG     +T++ +++ L    +   A DLL ++    C      + S+  G G+  R  
Sbjct: 14  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSF 73

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A ++F +M   G       Y  ++  L++  ++  A   Y+ M   G  P V +L+ +I
Sbjct: 74  EAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 133

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K +G + AA +IF+ M  RG  P+   Y  LI+GLC+  K+  A E+  +M+   C
Sbjct: 134 DGLSK-AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 192

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P  +TY  LI+GLC+S  VE A   F+EM   G +P+V+TY+ L+ G CK G +  A  
Sbjct: 193 TPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASH 252

Query: 283 -LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            L Q         +I TY+ +++ L K  K++EAV +++++   G  P    Y  +++  
Sbjct: 253 SLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGL 312

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRN 400
           C +G+ +EA + L ++V  G TP+ +T++       +++ GL K   +  A++++  M  
Sbjct: 313 CKMGRLEEAIDLLRKIVDNGCTPDVVTYT-------SLIDGLGKEKRSFEAYKLFKEMAL 365

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R +++D++ Y++LI    + G I +++ +   +   GC+PD  T S ++  L    ++  
Sbjct: 366 RGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGA 425

Query: 461 AAELL 465
           A  + 
Sbjct: 426 AVRIF 430



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/484 (26%), Positives = 227/484 (46%), Gaps = 47/484 (9%)

Query: 15  SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLD 74
           +A + +L++  K + +A  ++ + T+   +G   D  T S MI  L  A +   A  +  
Sbjct: 95  TALIRELLQTGK-IPQASSVYKTMTS---HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFK 150

Query: 75  RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
            +        E ++ ++  G  +  +   A+ +  +MK+  C P   +Y  ++  L +  
Sbjct: 151 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSG 210

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
            ++ A  F+  M E G +P V + N+LI   CK   T  A+  + +E    GCT D +TY
Sbjct: 211 DVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTY 270

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
             +++ L +  KI EA  L +++    C+PT+ TY +L+NGLC+   +EEA+ L  ++  
Sbjct: 271 TAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD 330

Query: 255 KGVEPNVFTYSSLMDGLCK-----------------------------------GGCSSQ 279
            G  P+V TY+SL+DGL K                                    G   Q
Sbjct: 331 NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQ 390

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  + + M S    P++VT ST+++GL K G++  AV I   M+ +GL P+  +Y  +I 
Sbjct: 391 ASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIH 450

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-M 398
             C   K   A   L +M     TP+ +T+       N ++ GLCK+    A + +   M
Sbjct: 451 GLCKARKMDCALEMLAQMKKAFCTPDTITY-------NILIDGLCKSGDVEAARAFFDEM 503

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
                  D  TY+ LI+ FCK G+   +  + D++    C  +  T+ A+++ L  RR++
Sbjct: 504 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQL 563

Query: 459 RQAA 462
            +A+
Sbjct: 564 TKAS 567



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 173/326 (53%), Gaps = 10/326 (3%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P +A+ N L+  LCK  G ++ A  + R++ + GCTPD  TY +LI+GL +  + +E
Sbjct: 16  GCTPTIATYNALLNGLCK-MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFE 74

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +LFKEM  +  +   V YT+LI  L Q+  + +A  +++ M S G  P+V T S+++D
Sbjct: 75  AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID 134

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GL K G    A+ + + M ++   PN V YS L++GLCK  K+  A+E+L +MK     P
Sbjct: 135 GLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 194

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
           D   Y  +I   C  G  + A  F DEM+  G  P+  T+       N ++ G CK    
Sbjct: 195 DTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY-------NILISGFCKAGNT 247

Query: 390 RAFQVYLSMRN--RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            A    L+        ++D  TY++++    K   I ++  +++++  +GC P   T++A
Sbjct: 248 DAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNA 307

Query: 448 VMTALWDRRKMRQAAELLLLELMNKC 473
           ++  L    ++ +A +LL   + N C
Sbjct: 308 LLNGLCKMGRLEEAIDLLRKIVDNGC 333



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 193/409 (47%), Gaps = 45/409 (11%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ + +K+   GC PT  +Y  +L  L +  +L+ A    R + + G  P V +   LI
Sbjct: 4   EAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 63

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K   + +A +K+F+EM  RG   D+  Y  LI  L + GKI +A  ++K M +  C
Sbjct: 64  DGLGKEKRSFEA-YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 122

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVT +++I+GL ++  +  A+R+F+ M ++G+ PN   YS+L+ GLCK      A+E
Sbjct: 123 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALE 182

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +L  M      P+ +TY+ L++GLCK G ++ A    D M   G KPD   Y  +IS FC
Sbjct: 183 MLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFC 242

Query: 343 DIG------------------------------------KYQEAANFLDEMVLGGITPNR 366
             G                                    K +EA   ++++   G TP  
Sbjct: 243 KAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPT- 301

Query: 367 LTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
                 I  +N ++ GLCK      A  +   + +   + D +TY+SLI    K+    +
Sbjct: 302 ------IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFE 355

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           + ++  E+ L G   D   ++A++  L    K+ QA+ +      + CV
Sbjct: 356 AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCV 404



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 163/304 (53%), Gaps = 9/304 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +  ++   GCTP   TY  L+NGLC++G++ EA +L +++    C+P VVTYTS
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+GL + K   EA +LF+EM  +G+  +   Y++L+  L + G   QA  + + M S  
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++VT ST+++GL K G++  AV I   M+ +GL P+  +Y  +I   C   K   A 
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 181

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTY 410
             L +M     TP+ +T+       N ++ GLCK+    A + +   M       D  TY
Sbjct: 182 EMLAQMKKAFCTPDTITY-------NVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY 234

Query: 411 SSLITCFCKKGDIHKSAR-IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           + LI+ FCK G+   ++  +  E  ++GC  D  T++A++  L   +K+ +A  L+    
Sbjct: 235 NILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKIT 294

Query: 470 MNKC 473
            N C
Sbjct: 295 ANGC 298



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 160/313 (51%), Gaps = 4/313 (1%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   ++  +   K + +A+ + +  TA   NG     +T++ +++ L    +   A DLL
Sbjct: 269 TYTAIVDWLAKNKKIEEAVALMEKITA---NGCTPTIATYNALLNGLCKMGRLEEAIDLL 325

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
            ++    C      + S+  G G+  R  +A ++F +M   G       Y  ++  L++ 
Sbjct: 326 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQT 385

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
            ++  A   Y+ M   G  P V +L+ +I  L K +G + AA +IF+ M  RG  P+   
Sbjct: 386 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK-AGRIGAAVRIFKSMEARGLAPNEVV 444

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y  LI+GLC+  K+  A E+  +M+   C+P  +TY  LI+GLC+S  VE A   F+EM 
Sbjct: 445 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEML 504

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             G +P+V+TY+ L+ G CK G +  A  +   M S R   N+VTY  L++GLCK  +L 
Sbjct: 505 EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLT 564

Query: 314 EAVEILDRMKLQG 326
           +A      MK +G
Sbjct: 565 KASLYFQHMKERG 577



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 158/314 (50%), Gaps = 1/314 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++ ++  L    +   A  L++++    C  T   + ++  G  ++ R  +
Sbjct: 261 NGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 320

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  K+ + GC P   +Y +++  L +E +   A++ ++ M   G+         LI+
Sbjct: 321 AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIR 380

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L + +G +  A  +++ M + GC PD  T  T+I+GL + G+I  A  +FK ME +  +
Sbjct: 381 ELLQ-TGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLA 439

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  V Y++LI+GLC+++ ++ A+ +  +M+     P+  TY+ L+DGLCK G    A   
Sbjct: 440 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF 499

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M+    +P++ TY+ L++G CK G    A  + D M       +   YG +IS  C 
Sbjct: 500 FDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCK 559

Query: 344 IGKYQEAANFLDEM 357
             +  +A+ +   M
Sbjct: 560 RRQLTKASLYFQHM 573



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
           K +EA   ++++   G TP        I  +N ++ GLCK      A  +   + +   +
Sbjct: 1   KIEEAVALMEKITANGCTPT-------IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCT 53

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D +TY+SLI    K+    ++ ++  E+ L G   D   ++A++  L    K+ QA+ +
Sbjct: 54  PDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSV 113

Query: 465 LLLELMNKCV 474
                 + CV
Sbjct: 114 YKTMTSHGCV 123


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 188/332 (56%), Gaps = 10/332 (3%)

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y  +L++LV++NQ+  A   ++    +   P   + N+LI+ LC+  G +D AF++F++M
Sbjct: 146 YNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCR-VGGVDRAFEVFKDM 204

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTVVTYTSLINGLCQSKS 241
            + GC PD  TY TLINGLC+  ++    ELFKE+++++ CSP +VTYTS+I+G C+S  
Sbjct: 205 ESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGK 264

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           ++EA  LFEEM   G++PNV T++ L+DG  K G  ++A  + + M       ++VT+++
Sbjct: 265 MKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTS 324

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L++G C+ G++   ++  + MK + + P    Y  +I+  C   +  EA +FL ++    
Sbjct: 325 LIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSS 384

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKK 420
           I P          ++N V+ G CK        V L  M  +    D +T++ LI   C K
Sbjct: 385 IIPKPF-------MYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVK 437

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           G + ++  I + ++   C PD  T +++++ L
Sbjct: 438 GRMFEAINIFNRMLATRCAPDNITVNSLISCL 469



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 183/378 (48%), Gaps = 14/378 (3%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL---AILVEENQLKLAFRFYRHMR-EI 149
           G  RV     A+  F    + G    P   +T L    ++   N  K+ F+F    R  +
Sbjct: 8   GPFRVRASTIAIARFHGQTQGGSRFYPDRQLTPLIAFEVIKRFNNPKVGFKFLEFSRLNL 67

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            +  C ++ N+L+++LC+  G  D    +F  M + G  PDS   G L+  + +      
Sbjct: 68  NVNHCYSTYNLLMRSLCQ-MGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDM 126

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            K+L  E++ K        Y +L++ L +   V EA+ LF+E       P+ +T++ L+ 
Sbjct: 127 VKKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIR 186

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG-LK 328
           GLC+ G   +A E+ + M S    P++VTY+TL+NGLCK  ++Q   E+   ++ +    
Sbjct: 187 GLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCS 246

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D 387
           PD   Y  IIS FC  GK +EA+N  +EM+  GI PN +T+       N ++ G  K  +
Sbjct: 247 PDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITF-------NVLIDGFGKIGN 299

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
              A  +Y  M     S D +T++SLI  +C+ G ++   +  + +      P   T++ 
Sbjct: 300 IAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAV 359

Query: 448 VMTALWDRRKMRQAAELL 465
           ++ AL    ++ +A + L
Sbjct: 360 LINALCKENRLNEARDFL 377



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 1/244 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +IS    + + + A +L + + +         F  +  G+G++    +A  ++
Sbjct: 248 DIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMY 307

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            KM  F C     ++ +++       Q+    +F+  M+   + P V +  VLI ALCK 
Sbjct: 308 RKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKE 367

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +  ++ A     ++ N    P  + Y  +I+G C+ G + E   + KEME K C P  VT
Sbjct: 368 N-RLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVT 426

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +T LI G C    + EA+ +F  M +    P+  T +SL+  L K G  ++A  + +M +
Sbjct: 427 FTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRIRKMAL 486

Query: 289 SKRH 292
             R+
Sbjct: 487 EDRN 490


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 235/478 (49%), Gaps = 50/478 (10%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           + S  V  L RA K V+KAL +F  A        +  +ST++ +I  L+   Q     ++
Sbjct: 164 VLSELVKALGRA-KMVSKALSVFYQAKGRKC---KPTSSTYNSVILMLMQEGQHEKVHEV 219

Query: 73  LDRV-NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
              + N+  C      + ++   Y ++ R   A+R+FD+MK+   +PT K Y T+L I  
Sbjct: 220 YTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYF 279

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +  +++ A   +  M+  G  P V +   LIK L K +G ++ A+ +++ M   G TPD 
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGK-AGRVEEAYDLYKNMLTDGLTPDV 338

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRLFE 250
                L+N L ++G++ E   +F EM T  C+PTVV+Y ++I  L +SK+ V E    F+
Sbjct: 339 VFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFD 398

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE- 309
           +M++ GV P+ FTYS L+DG CK     +A+ LL+ M  K   P    Y +L+N L K  
Sbjct: 399 KMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458

Query: 310 ----------------------------------GKLQEAVEILDRMKLQGLKPDAGLYG 335
                                             GKL EAV++ + MK QG  PD   Y 
Sbjct: 459 RYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYN 518

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQV 394
            ++S     G   EA + L +M   G T +       I  HN ++ G  +T  P RA ++
Sbjct: 519 ALMSGMVKAGMVNEANSLLRKMEENGCTAD-------INSHNIILNGFARTGVPRRAIEM 571

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           + +M++  I  D +TY++L+ CF   G   ++AR++ E+   G   D  T+S+++ A+
Sbjct: 572 FETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAV 629



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/495 (26%), Positives = 229/495 (46%), Gaps = 28/495 (5%)

Query: 6   MFKWSTKITSA-QVLQL----------IRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW      A +VL+L          +  + ++N  +  F  A       F+HD ST+ 
Sbjct: 73  IFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKR--RNFQHDCSTYM 130

Query: 55  LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS-ICRGYGRVHRPLDAMRVFDKMKE 113
            +I  L  A  +      +  V +        + LS + +  GR      A+ VF + K 
Sbjct: 131 ALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKALSVFYQAKG 190

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTM 172
             C+PT  +Y +V+ +L++E Q +     Y  M  E    P   + + LI +  K  G  
Sbjct: 191 RKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEK-LGRN 249

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D+A ++F EM +    P    Y TL+    ++GK+ +A +LF+EM+   CSPTV TYT L
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I GL ++  VEEA  L++ M + G+ P+V   ++LM+ L K G   +   +   M + R 
Sbjct: 310 IKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRC 369

Query: 293 RPNIVTYSTLLNGLCK-EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            P +V+Y+T++  L + +  + E     D+MK  G+ P    Y  +I  +C   + ++A 
Sbjct: 370 TPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKAL 429

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTY 410
             L+EM   G  P    +        +++  L K     A  +++  ++    +V S  Y
Sbjct: 430 LLLEEMDEKGFPPCPAAYC-------SLINALGKAKRYEAANELFKELKENFGNVSSRVY 482

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           + +I  F K G + ++  + +E+   G  PD   ++A+M+ +     + +A  LL     
Sbjct: 483 AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEE 542

Query: 471 NKCVEAEVDIQNQDV 485
           N C     DI + ++
Sbjct: 543 NGCT---ADINSHNI 554


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/436 (29%), Positives = 229/436 (52%), Gaps = 40/436 (9%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF-LSICRG-YGRVHRPLDAMRVF 108
           S+F+ ++  L   N +     L + +      ++ D+F LSI       V+R  +A+   
Sbjct: 92  SSFNRLLGGLAKINHYSQLFSLYNEM--RLAGLSPDLFTLSILANCLCNVNRVSEALAAM 149

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             +   G  P   +Y T++  L  E+++  A R +  M+++G  P   +   LIK LC+ 
Sbjct: 150 AGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQ- 208

Query: 169 SGTMDAAFKIFREMPNRG------CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           +G ++ A K+ +EM N        C P   TY  +I+GLC++G+  EAKELF+EM+ +  
Sbjct: 209 TGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGM 268

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V++Y++LI+G C +   +++  LF+EM  +GV+P++ T+S L+D LCK G  ++A +
Sbjct: 269 IPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKK 328

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL++MI +   PN++TY++L++G C  G L  A E+   M  +GL+PD   Y  +I+ +C
Sbjct: 329 LLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYC 388

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTW----------------------------SLHIR 374
              K +EA N  +EM+  G +PN  T+                            S + +
Sbjct: 389 KTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQ 448

Query: 375 IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           I+   + GLCK D    A +++  +++ +  ++   YS LI   CK G +  +  + ++L
Sbjct: 449 IYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKL 508

Query: 434 VLDGCLPDEGTWSAVM 449
             +G  PD  T++ ++
Sbjct: 509 SQEGLQPDVVTYNIMI 524



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 222/456 (48%), Gaps = 36/456 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T S++ + L + N+   A   +  + +         + ++ +G    HR  +A
Sbjct: 121 GLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEA 180

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE------IGIQPCVASL 158
            R+F +M++ GC P   +Y T++  L +   + +A + ++ M        +  +P V + 
Sbjct: 181 TRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITY 240

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           +++I  LCK  G  D A ++F EM  +G  PD  +Y TLI+G C  GK  ++K LF EM 
Sbjct: 241 SIIIDGLCK-VGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMV 299

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            +   P +VT++ LI+ LC+   V EA +L E M  +G+ PN+ TY+SL+DG C  G  +
Sbjct: 300 DQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLN 359

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A EL   M SK   P+ ++Y+TL+NG CK  K++EA+ + + M   G  P+   YG ++
Sbjct: 360 SARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLL 419

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNR----------------------------LTWS 370
                 GK  +A      M   G++ N                               + 
Sbjct: 420 KGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFK 479

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
           L+I  ++ ++ GLCK      A++++  +    +  D +TY+ +I  FCK G +  +  +
Sbjct: 480 LNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANIL 539

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +++  +GC PD   ++ ++    +  K+ +  +LL
Sbjct: 540 FEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLL 575



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 196/383 (51%), Gaps = 12/383 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S++I  L    +   A++L + +  +        + ++  G+    +   +  +FD+M
Sbjct: 239 TYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEM 298

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G +P   ++  ++  L +E ++  A +    M + GI P + + N LI   C   G 
Sbjct: 299 VDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM-VGD 357

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +++A ++F  MP++G  PD  +Y TLING C+  K+ EA  L+ EM     SP V TY +
Sbjct: 358 LNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGT 417

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+ GL Q   V +A +LF  M++ GV  N   Y   +DGLCK  C  +AMEL   + S  
Sbjct: 418 LLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYN 477

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            + NI  YS L++GLCK GKL+ A E+ +++  +GL+PD   Y  +I  FC +G+   A 
Sbjct: 478 FKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNAN 537

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
              ++M   G TP+ + +       NT++ G C+ +      ++   M  + +S ++ + 
Sbjct: 538 ILFEKMEENGCTPDIIAY-------NTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASC 590

Query: 411 SSLITCFCKKGDIHKSARIVDEL 433
           + ++   CK     K  + VD L
Sbjct: 591 TIVVDMLCKD---EKYKKFVDLL 610



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 159/313 (50%), Gaps = 1/313 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  TFS++I  L    +   A+ LL+ + +         + S+  G+  V     A
Sbjct: 302 GVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSA 361

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F  M   G EP   SY T++    +  ++K A   Y  M ++G  P V +   L+K 
Sbjct: 362 RELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKG 421

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L +     DA  K+F  M   G + +S  YG  ++GLC+   ++EA ELF E+++     
Sbjct: 422 LFQKGKVGDAK-KLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKL 480

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +  Y+ LI+GLC++  +E A  LFE++  +G++P+V TY+ ++ G CK G    A  L 
Sbjct: 481 NIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILF 540

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M      P+I+ Y+TLL G C+  KL+E +++L +M  + + P+A     ++   C  
Sbjct: 541 EKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKD 600

Query: 345 GKYQEAANFLDEM 357
            KY++  + L + 
Sbjct: 601 EKYKKFVDLLPKF 613



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 162/372 (43%), Gaps = 73/372 (19%)

Query: 166 CKNSGTMDA--AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           CK +G + A  AF  F  M      P   ++  L+ GL ++    +   L+ EM     S
Sbjct: 65  CK-TGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLS 123

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P + T + L N LC    V EA+     +  +G  PNV TY++L+ GLC     S+A  L
Sbjct: 124 PDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRL 183

Query: 284 LQMMISKRHRPNIVTYSTL----------------------------------------- 302
              M      PN VTY TL                                         
Sbjct: 184 FLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSII 243

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           ++GLCK G+  EA E+ + MK QG+ PD   Y  +I  FC  GK+ ++ +  DEMV  G+
Sbjct: 244 IDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGV 303

Query: 363 TPNRLTWSLHIR----------------------------IHNTVVQGLCKT-DPNRAFQ 393
            P+ +T+S+ I                              +N+++ G C   D N A +
Sbjct: 304 QPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARE 363

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++LSM ++ +  D ++Y++LI  +CK   + ++  + +E++  G  P+  T+  ++  L+
Sbjct: 364 LFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLF 423

Query: 454 DRRKMRQAAELL 465
            + K+  A +L 
Sbjct: 424 QKGKVGDAKKLF 435



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 142/274 (51%), Gaps = 1/274 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I           A +L   +  +  +  E  + ++  GY +  +  +AM ++++M
Sbjct: 344 TYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEM 403

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G  P   +Y T+L  L ++ ++  A + +  M+  G+        + +  LCKN   
Sbjct: 404 LQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCL 463

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            +A  ++F E+ +     +   Y  LI+GLC+ GK+  A ELF+++  +   P VVTY  
Sbjct: 464 FEA-MELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNI 522

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+   V+ A  LFE+M   G  P++  Y++L+ G C+G    + ++LL  M+ K 
Sbjct: 523 MIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKD 582

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
             PN  + + +++ LCK+ K ++ V++L +  +Q
Sbjct: 583 VSPNAASCTIVVDMLCKDEKYKKFVDLLPKFPVQ 616



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 134/266 (50%), Gaps = 4/266 (1%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+N A  +F S  ++   G   D  +++ +I+      + + A +L + + +        
Sbjct: 357 DLNSARELFLSMPSK---GLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVT 413

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + ++ +G  +  +  DA ++F  MK +G     + Y   L  L + + L  A   +  +
Sbjct: 414 TYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNEL 473

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +    +  + + + LI  LCK +G ++ A+++F ++   G  PD  TY  +I+G C++G+
Sbjct: 474 KSYNFKLNIENYSCLIDGLCK-AGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQ 532

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A  LF++ME   C+P ++ Y +L+ G C+   +EE ++L  +M  K V PN  + + 
Sbjct: 533 VDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTI 592

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRH 292
           ++D LCK     + ++LL     +RH
Sbjct: 593 VVDMLCKDEKYKKFVDLLPKFPVQRH 618


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 217/454 (47%), Gaps = 48/454 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDK 110
           T++++I     A +       L  V K+   +    F  + +G     R  DAM  V  +
Sbjct: 94  TYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRR 153

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REIGIQPCVASLNVLIKALCK 167
           M E GC P   SY  +L  L +EN+ + A      M   R  G  P V S N ++    K
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G  D A+  + EM +RG  PD  TY ++I  LC+   + +A E+   M      P  +
Sbjct: 214 -EGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 272

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY S+++G C S   +EA+   ++MRS GVEPNV TYSSLM+ LCK G S++A ++   M
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD--------------------------- 320
             +   P+I TY TLL G   +G L E   +LD                           
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKV 392

Query: 321 --------RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
                   +M+  GL P+   YG +I   C  G   +A  + ++M+  G+TPN       
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN------- 445

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           I ++ +++ GLC  D  ++A ++ L M +R I ++++ ++S+I   CK+G + +S ++ D
Sbjct: 446 IIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD 505

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +V  G  PD  T++ ++       KM +A +LL
Sbjct: 506 LMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 229/463 (49%), Gaps = 12/463 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++  +   + ++KA+ + ++      NG   D  T++ ++    S+ Q + A   
Sbjct: 237 VTYSSIIAALCKAQAMDKAMEVLNTMVK---NGVMPDCMTYNSILHGYCSSGQPKEAIGT 293

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++  +  +     + S+     +  R  +A ++FD M + G EP   +Y T+L     
Sbjct: 294 LKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYAT 353

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L         M   GIQP     N+LI A  K    +D A  +F +M   G  P+  
Sbjct: 354 KGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQE-KVDQAMLVFSKMRQHGLNPNVV 412

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
            YGT+I+ LC+ G + +A   F++M  +  +P ++ YTSLI+GLC     ++A  L  EM
Sbjct: 413 CYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEM 472

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+  N   ++S++D  CK G   ++ +L  +M+    +P+I+TY+TL++G C  GK+
Sbjct: 473 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L  M   G+KPD   YG +I+ +C + +  +A     EMV  G++PN +T+   
Sbjct: 533 DEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY--- 589

Query: 373 IRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               N ++QGL  T    A  ++Y+S+      ++  TY+ ++   CK     ++ R+  
Sbjct: 590 ----NIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQ 645

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            L L     +  T++ ++ AL    +M +A +L      N  V
Sbjct: 646 NLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLV 688



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 196/423 (46%), Gaps = 60/423 (14%)

Query: 99  HRPLDAMRVFDKMKEFGC---EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           H P  A+  +++M   G     PT  +Y  ++       +L L F    ++ + G +   
Sbjct: 68  HSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDA 127

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL-- 213
            +   L+K LC +  T DA   + R M   GC PD ++Y  L+ GLC   +  EA EL  
Sbjct: 128 ITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLH 187

Query: 214 ------------------------------------FKEMETKACSPTVVTYTSLINGLC 237
                                               + EM  +   P VVTY+S+I  LC
Sbjct: 188 MMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALC 247

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +++++++AM +   M   GV P+  TY+S++ G C  G   +A+  L+ M S    PN+V
Sbjct: 248 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVV 307

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TYS+L+N LCK G+  EA +I D M  +GL+PD   Y  ++  +   G   E    LD M
Sbjct: 308 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 367

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
           V  GI P+         + N ++    K +  ++A  V+  MR   ++ + + Y ++I  
Sbjct: 368 VRNGIQPDH-------HVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDV 420

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL-----WDRRKMRQAAELLLLELMN 471
            CK G +  +    ++++ +G  P+   +++++  L     WD+      AE L+LE+++
Sbjct: 421 LCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDK------AEELILEMLD 474

Query: 472 KCV 474
           + +
Sbjct: 475 RGI 477



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 188/429 (43%), Gaps = 45/429 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS T     G   D +T+  ++    +         LLD + +        +F  +  
Sbjct: 328 IFDSMTKR---GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILIC 384

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +   AM VF KM++ G  P    Y TV+ +L +   +  A  ++  M + G+ P
Sbjct: 385 AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444

Query: 154 CVASLNVLIKALCK--------------------------NS--------GTMDAAFKIF 179
            +     LI  LC                           NS        G +  + K+F
Sbjct: 445 NIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 504

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  PD  TY TLI+G C  GK+ EA +L   M +    P +VTY +LING C+ 
Sbjct: 505 DLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 564

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A+ LF+EM S GV PN+ TY+ ++ GL     ++ A EL   +     +  + TY
Sbjct: 565 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTY 624

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     EA+ +   + L  L+ +   +  +I      G+  EA +       
Sbjct: 625 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSA 684

Query: 360 GGITPNRLTWSLHIRIHNTVVQG-LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            G+ P+  T+SL     N + QG L + D      ++LSM     S DS   +S++    
Sbjct: 685 NGLVPDVRTYSL--MAENLIEQGSLEELD-----DLFLSMEENGCSADSRMLNSIVRKLL 737

Query: 419 KKGDIHKSA 427
           ++GDI ++ 
Sbjct: 738 QRGDITRAG 746



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 162/338 (47%), Gaps = 6/338 (1%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL-LDRV 76
           V+ ++     V+ A++ F+    E   G   +   ++ +I  L + +++  AE+L L+ +
Sbjct: 417 VIDVLCKSGSVDDAMLYFEQMIDE---GLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           ++  C +    F SI   + +  R +++ ++FD M   G +P   +Y T++       ++
Sbjct: 474 DRGIC-LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
             A +    M  +G++P + +   LI   C+ S  MD A  +F+EM + G +P+  TY  
Sbjct: 533 DEATKLLASMVSVGVKPDIVTYGTLINGYCRVS-RMDDALALFKEMVSSGVSPNIITYNI 591

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++ GL    +   AKEL+  +        + TY  +++GLC++   +EA+R+F+ +    
Sbjct: 592 ILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 651

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           ++    T++ ++  L K G   +A +L     +    P++ TYS +   L ++G L+E  
Sbjct: 652 LQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELD 711

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++   M+  G   D+ +   I+      G    A  +L
Sbjct: 712 DLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL 749



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 5/261 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G + D  T++ +I     A +   A  LL   +     +  DI  + ++  GY RV R  
Sbjct: 511 GVKPDIITYNTLIDGCCLAGKMDEATKLL--ASMVSVGVKPDIVTYGTLINGYCRVSRMD 568

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M   G  P   +Y  +L  L    +   A   Y  + + G Q  +++ N+++
Sbjct: 569 DALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIIL 628

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN+ T D A ++F+ +       ++ T+  +I  L + G++ EAK+LF        
Sbjct: 629 HGLCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGL 687

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TY+ +   L +  S+EE   LF  M   G   +    +S++  L + G  ++A  
Sbjct: 688 VPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGT 747

Query: 283 LLQMMISKRHRPNIVTYSTLL 303
            L M+  K       T S LL
Sbjct: 748 YLFMIDEKHFSLEASTASFLL 768



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 47/263 (17%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F E+  +    ++      +  + +  S   A+  +  M   G   V P V TY+
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYA 96

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            L+   C+ G        L  ++ K  R + +T++ LL GLC + +  +A++I L RM  
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV--LGGITPNRLTWSLHIRIHNTVVQG 382
            G  PD   Y  ++   CD  + QEA   L  M    GG +P                  
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPP----------------- 199

Query: 383 LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
                                  D ++Y++++  F K+GD  K+     E++  G LPD 
Sbjct: 200 -----------------------DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDV 236

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T+S+++ AL   + M +A E+L
Sbjct: 237 VTYSSIIAALCKAQAMDKAMEVL 259


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 184/329 (55%), Gaps = 9/329 (2%)

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            +F  + ++ + G +P   +L  LIK LC   G +  A     ++   G   +   YGTL
Sbjct: 109 FSFSVFANILKKGYEPNAITLTTLIKGLCL-KGQIHQALHFHDKVVALGFHLNKVCYGTL 167

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           INGLC++G+   A +L + ++ K   P VV Y ++I+ +C+ K V EA  L+ EM SKG+
Sbjct: 168 INGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGI 227

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P+V TYS+L+ G C  G  + A+ L   MIS+   P++ T+S L++G CKEG+++EA  
Sbjct: 228 SPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKN 287

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +L  M  QG+KPD   Y  ++  +C + +  +A +  + M  GG+T N       ++ +N
Sbjct: 288 VLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTAN-------VQSYN 340

Query: 378 TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++ G CK    + A  ++  M  ++I  D +TY+SLI   CK G I  + ++VDE+   
Sbjct: 341 IMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDR 400

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G   D+ T+++++ AL    ++ +A  LL
Sbjct: 401 GVPHDKITYNSILDALCKNHQVDKAIALL 429



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 201/384 (52%), Gaps = 12/384 (3%)

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           +T +I ++     G  H    +  VF  + + G EP   +  T++  L  + Q+  A  F
Sbjct: 92  VTFNILINCFSQLGHTHF---SFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHF 148

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +  +  +G          LI  LCK  G   AA ++ R +  +   P+   Y T+I+ +C
Sbjct: 149 HDKVVALGFHLNKVCYGTLINGLCK-VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMC 207

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           ++  + EA +L+ EM +K  SP VVTY++LI+G C    + +A+ LF +M S+ + P+V+
Sbjct: 208 KVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVY 267

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T+S L+DG CK G   +A  +L MM+ +  +P++VTY +L++G C   ++ +A  I + M
Sbjct: 268 TFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTM 327

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
              G+  +   Y  +I+ FC I K  EA N   EM    I P+ +T+       N+++ G
Sbjct: 328 AQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTY-------NSLIDG 380

Query: 383 LCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LCK+   + A ++   M +R +  D +TY+S++   CK   + K+  ++ ++  +G  PD
Sbjct: 381 LCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 440

Query: 442 EGTWSAVMTALWDRRKMRQAAELL 465
             T++ ++  L    +++ A  + 
Sbjct: 441 MYTYTILIDGLCKGGRLKDAQNIF 464



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 211/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  +  T + +I  L    Q   A    D+V      + +  + ++  G  +V +   A
Sbjct: 121 GYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAA 180

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  ++     +P    Y T++  + +   +  AF  Y  M   GI P V + + LI  
Sbjct: 181 LQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISG 240

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G ++ A  +F +M +    PD YT+  L++G C+ G++ EAK +   M  +   P
Sbjct: 241 FCI-LGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKP 299

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY SL++G C  K V +A  +F  M   GV  NV +Y+ +++G CK     +AM L 
Sbjct: 300 DVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLF 359

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P++VTY++L++GLCK GK+  A++++D M  +G+  D   Y  I+   C  
Sbjct: 360 KEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKN 419

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSI 403
            +  +A   L +M   GI P+  T+++       ++ GLCK    +  Q ++  +  +  
Sbjct: 420 HQVDKAIALLTKMKDEGIQPDMYTYTI-------LIDGLCKGGRLKDAQNIFEDLLVKGY 472

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           ++   TY+ +I  FC      K+  ++ ++  +GC+P+  T+  ++ +L+++ +   A +
Sbjct: 473 NITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEK 532

Query: 464 LL 465
           LL
Sbjct: 533 LL 534



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 210/435 (48%), Gaps = 15/435 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHR 100
           NG   D  TF+++I+          +  +   + K+  +       ++ +G    G++H+
Sbjct: 85  NGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQ 144

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A+   DK+   G       Y T++  L +  Q   A +  R +    +QP V   N 
Sbjct: 145 ---ALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNT 201

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I ++CK    ++ AF ++ EM ++G +PD  TY  LI+G C LGK+ +A  LF +M ++
Sbjct: 202 IIDSMCK-VKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISE 260

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +P V T++ L++G C+   V+EA  +   M  +G++P+V TY SLMDG C     ++A
Sbjct: 261 EINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKA 320

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             +   M       N+ +Y+ ++NG CK  K+ EA+ +   M  + + PD   Y  +I  
Sbjct: 321 KSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDG 380

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
            C  GK   A   +DEM   G+  +++T+       N+++  LCK    ++A  +   M+
Sbjct: 381 LCKSGKISYALKLVDEMHDRGVPHDKITY-------NSILDALCKNHQVDKAIALLTKMK 433

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +  I  D  TY+ LI   CK G +  +  I ++L++ G      T++ ++    D     
Sbjct: 434 DEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFD 493

Query: 460 QAAELLLLELMNKCV 474
           +A  LL     N C+
Sbjct: 494 KALALLSKMEDNGCI 508



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 220/445 (49%), Gaps = 12/445 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++ +  +  +++AL   D   A    GF  +   +  +I+ L    Q   A  L
Sbjct: 127 ITLTTLIKGLCLKGQIHQALHFHDKVVAL---GFHLNKVCYGTLINGLCKVGQTSAALQL 183

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L RV+ +       ++ +I     +V    +A  ++ +M   G  P   +Y  +++    
Sbjct: 184 LRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCI 243

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             +L  A   +  M    I P V + ++L+   CK  G +  A  +   M  +G  PD  
Sbjct: 244 LGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCK-EGRVKEAKNVLAMMMKQGIKPDVV 302

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +L++G C + ++ +AK +F  M     +  V +Y  +ING C+ K V+EAM LF+EM
Sbjct: 303 TYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEM 362

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             K + P+V TY+SL+DGLCK G  S A++L+  M  +    + +TY+++L+ LCK  ++
Sbjct: 363 HCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 422

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            +A+ +L +MK +G++PD   Y  +I   C  G+ ++A N  +++++ G       +++ 
Sbjct: 423 DKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKG-------YNIT 475

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           +  +  ++QG C  D  ++A  +   M +     ++ TY  +I    +K +   + +++ 
Sbjct: 476 VYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLR 535

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRR 456
           E++  G L        + T  + RR
Sbjct: 536 EMIARGLLFGWKKAYCLFTRFFQRR 560



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 169/354 (47%), Gaps = 15/354 (4%)

Query: 118 PTPKSYITV-----LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           P PK  I+      L    ++++  L   F R +  I   P +     ++ +L K     
Sbjct: 15  PNPKFIISTSLYSQLHHHHQDDEHSLVSSFNR-ILNINPTPPIFEFGKILGSLVK-INCY 72

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
             A  + REM   G   D  T+  LIN   +LG  + +  +F  +  K   P  +T T+L
Sbjct: 73  QTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTL 132

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I GLC    + +A+   +++ + G   N   Y +L++GLCK G +S A++LL+ +  K  
Sbjct: 133 IKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLV 192

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +PN+V Y+T+++ +CK   + EA ++   M  +G+ PD   Y  +IS FC +GK  +A  
Sbjct: 193 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIG 252

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYS 411
             ++M+   I P+  T+S+       +V G CK      A  V   M  + I  D +TY 
Sbjct: 253 LFNKMISEEINPDVYTFSI-------LVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYC 305

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           SL+  +C    ++K+  I + +   G   +  +++ ++      +K+ +A  L 
Sbjct: 306 SLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLF 359



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 134/257 (52%), Gaps = 9/257 (3%)

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P +  +  ++  L +    + A+ L  EM   G+  ++ T++ L++   + G +  +  
Sbjct: 53  TPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFS 112

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   ++ K + PN +T +TL+ GLC +G++ +A+   D++   G   +   YG +I+  C
Sbjct: 113 VFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLC 172

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
            +G+   A   L  +    + PN       + ++NT++  +CK    N AF +Y  M ++
Sbjct: 173 KVGQTSAALQLLRRVDGKLVQPN-------VVMYNTIIDSMCKVKLVNEAFDLYSEMVSK 225

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            IS D +TYS+LI+ FC  G ++ +  + ++++ +   PD  T+S ++       ++++A
Sbjct: 226 GISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEA 285

Query: 462 AELLLLELMNKCVEAEV 478
             +L + +M + ++ +V
Sbjct: 286 KNVLAM-MMKQGIKPDV 301


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 220/424 (51%), Gaps = 11/424 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  T+S +IS L    +   A ++++ + ++  +     +  I     R  +  +A
Sbjct: 5   GFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEA 64

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F KM E GC     +Y  ++  L ++  ++ A++    M   G +P   + N ++  
Sbjct: 65  DELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSG 124

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK--EMETKAC 222
           LC+  G +  A + F  MP+RG +PD   Y  L++ L + GK+ EA  LFK  +M  +  
Sbjct: 125 LCR-MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKV 183

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P ++TY +LI+G C+ +  +EAM+LF+++ +KG  P+  TY+S++ GL +     +A E
Sbjct: 184 APDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEE 243

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M+     PN  TYS +L+G C+ G +   +E+ + M  +   PD  L   +I   C
Sbjct: 244 MFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLC 303

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
              K  +A   L+EM   G  P+ +T+       N ++ GLCKT+  ++A +++ +M + 
Sbjct: 304 KAKKVDDAHKVLEEMSKIGAVPDVVTY-------NILLDGLCKTNLVDKAHELFSTMVDN 356

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             + D ++YS ++   CK   +H +  + D ++    +PD  T++ +M  L    K+ +A
Sbjct: 357 GCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEA 416

Query: 462 AELL 465
            +LL
Sbjct: 417 KDLL 420



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 191/366 (52%), Gaps = 11/366 (3%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M E G EP   +Y T+++ L +  ++  A      M E G+ P VA+  +++  LC+ +G
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCR-AG 59

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +D A ++F +M  RGC+ ++  Y  LINGLC+   I  A +L +EM +K   P  +TY 
Sbjct: 60  KVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYN 119

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM--I 288
           ++++GLC+   V EA + F+ M S+G  P+V  Y+ L+D L K G  ++A  L + M   
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMA 179

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            ++  P+++TY+TL++G C+  K  EA+++   +  +G  PD   Y  I+          
Sbjct: 180 DRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMD 239

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
           EA     +MV  G  PN  T+S+       V+ G C+  +  R  ++Y  M  +  S D 
Sbjct: 240 EAEEMFKKMVDSGCAPNGATYSI-------VLSGHCRVGNMARCLELYEEMTEKRFSPDV 292

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           L  +++I   CK   +  + ++++E+   G +PD  T++ ++  L     + +A EL   
Sbjct: 293 LLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFST 352

Query: 468 ELMNKC 473
            + N C
Sbjct: 353 MVDNGC 358



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 231/456 (50%), Gaps = 14/456 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++  +     V +AL + +  T +   G   D +T+++++ +L  A +   A++L
Sbjct: 11  VTYSTIISGLCKTGKVTEALEMVEEMTEK---GVNPDVATYTIIVDRLCRAGKVDEADEL 67

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
             ++ +  C      + ++  G  +      A ++ ++M   G EP   +Y T+L+ L  
Sbjct: 68  FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR--EMPNRGCTPD 190
             ++  A +F+  M   G  P V + N L+ AL K  G +  A+ +F+  +M +R   PD
Sbjct: 128 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYK-EGKVAEAWGLFKTMDMADRKVAPD 186

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY TLI+G CR+ K  EA +LFK++  K   P  VTY S++ GL +  +++EA  +F+
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 246

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M   G  PN  TYS ++ G C+ G  ++ +EL + M  KR  P+++  + +++ LCK  
Sbjct: 247 KMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAK 306

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           K+ +A ++L+ M   G  PD   Y  ++   C      +A      MV  G  P+ +++S
Sbjct: 307 KVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYS 366

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
           +       V+ GLCKT+  + A  ++  M  R +  D +T++ L+   CK G + ++  +
Sbjct: 367 V-------VLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDL 419

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +D +     LPD  T + +M  L   ++  +A  L 
Sbjct: 420 LDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLF 455



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 215/456 (47%), Gaps = 36/456 (7%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVH 99
           + G+  DN T++ ++S L    +   A+   D +         +  +  L      G+V 
Sbjct: 108 SKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVA 167

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
                 +  D M +    P   +Y T++       +   A + ++ +   G  P   + N
Sbjct: 168 EAWGLFKTMD-MADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYN 226

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            ++  L + S  MD A ++F++M + GC P+  TY  +++G CR+G +    EL++EM  
Sbjct: 227 SILLGLARKS-NMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTE 285

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K  SP V+   ++I+ LC++K V++A ++ EEM   G  P+V TY+ L+DGLCK     +
Sbjct: 286 KRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDK 345

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A EL   M+     P+IV+YS +LNGLCK  K+ +A  + DRM  + L PD   +  ++ 
Sbjct: 346 AHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMD 405

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWS--LH-----------IRI----------- 375
             C  GK  EA + LD M    + P+ +T +  +H           +R+           
Sbjct: 406 GLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVA 465

Query: 376 ----HNTVVQGLCKTDP-NRAFQVYLSM--RNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
               HN V+ GLC+     +A   + SM   +   S D +TY++L+    + G + ++  
Sbjct: 466 DVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVD 525

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
              ++   GC PD   ++ +M  L  + +  QA  L
Sbjct: 526 YFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRL 561



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 176/372 (47%), Gaps = 42/372 (11%)

Query: 23  RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82
           R EK  ++A+ +F    A+   G+  D  T++ ++  L   +    AE++  ++    C 
Sbjct: 199 RVEK-TDEAMKLFKDVIAK---GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCA 254

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
                +  +  G+ RV      + ++++M E    P       V+ +L +  ++  A + 
Sbjct: 255 PNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKV 314

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
              M +IG  P V + N+L+  LCK +  +D A ++F  M + GC PD  +Y  ++NGLC
Sbjct: 315 LEEMSKIGAVPDVVTYNILLDGLCK-TNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLC 373

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTY--------------------------------- 229
           +  K+++A+ LF  M  +   P VVT+                                 
Sbjct: 374 KTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGV 433

Query: 230 --TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
             T+L++GLC+ K  +EA+RLF+ M  KG   +V  ++ ++ GLC+ G  +QA+   + M
Sbjct: 434 TCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSM 493

Query: 288 ISK--RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           +       P++VTY+TL+N L + G++ +AV+   +M   G  PD   Y  +++     G
Sbjct: 494 VKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQG 553

Query: 346 KYQEAANFLDEM 357
           ++ +A      M
Sbjct: 554 RHIQADRLTQAM 565



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 3/248 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+++++  L   N    A +L   +    C      +  +  G  + ++  DA
Sbjct: 322 GAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDA 381

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FD+M E    P   ++  ++  L +  +L  A      M E  + P   +   L+  
Sbjct: 382 RVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHG 441

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKAC 222
           LC++  T D A ++F+ M  +G   D   +  ++ GLCR GK+ +A   FK M       
Sbjct: 442 LCRDKRT-DEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEF 500

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP VVTYT+L+N L ++  V++A+  F++M   G  P+   Y++LM+GL K G   QA  
Sbjct: 501 SPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADR 560

Query: 283 LLQMMISK 290
           L Q M  K
Sbjct: 561 LTQAMKEK 568



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 6/237 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V+KA  +F +      NG   D  ++S++++ L   N+   A  L DR+ + K       
Sbjct: 343 VDKAHELFSTMVD---NGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVT 399

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  +  G  +  +  +A  + D M E    P   +  T++  L  + +   A R +++M 
Sbjct: 400 FNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMV 459

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM--PNRGCTPDSYTYGTLINGLCRLG 205
           E G    V   N+++  LC+  G +  A   F+ M   +   +PD  TY TL+N L   G
Sbjct: 460 EKGTVADVLPHNIVLAGLCR-EGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAG 518

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           ++ +A + F++M    C+P  V Y +L+NGL +     +A RL + M+ KG   + F
Sbjct: 519 RVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 575


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 182/357 (50%), Gaps = 9/357 (2%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M  FG  P   +   ++       +L  AF     + ++G QP   + N LI+ LC   
Sbjct: 137 QMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCV-E 195

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A  +F +    G  PD  TYGTL+NGLC++G    A  L + M  K C P V+ Y
Sbjct: 196 GKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAY 255

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            ++I+ LC+ + V EA  LF EM +KG+ P++FTY+SL+  LC          LL  M++
Sbjct: 256 NTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVN 315

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
            +  PN+V +ST+++ LCKEG +  A +++D M  +G++PD   Y  ++   C   +  E
Sbjct: 316 SKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDE 375

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A    D MV  G  PN       +R +N ++ G C+    ++A  +   M  + +  D++
Sbjct: 376 AVKVFDTMVHKGCVPN-------VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTV 428

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TY++LI   C  G +  +  +  E+V  G +PD  T+  ++  L     + +A  LL
Sbjct: 429 TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLL 485



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 194/394 (49%), Gaps = 9/394 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T +++I+      +   A  +L ++ K  C      F ++ RG     +  +A
Sbjct: 142 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEA 201

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +FDK    G +P   +Y T++  L +      A R  R M +   +P V + N +I +
Sbjct: 202 LHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDS 261

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+    +A F +F EM  +G +PD +TY +LI+ LC L +      L  EM      P
Sbjct: 262 LCKDRQVTEA-FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMP 320

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV ++++++ LC+   +  A  + + M  +GVEP+V TY++LMDG C      +A+++ 
Sbjct: 321 NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVF 380

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+ K   PN+ +Y+ L+NG C+  ++ +A+ +L++M LQGL  D   Y  +I   C +
Sbjct: 381 DTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHV 440

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSI 403
           G+ Q A     EMV  G  P+ +T+ +       ++  LCK        V L ++   ++
Sbjct: 441 GRLQHAIALFHEMVASGQIPDLVTYRI-------LLDYLCKNHHLAEAMVLLKAIEGSNL 493

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
             D L Y+  I   C+ G++  +  +   L   G
Sbjct: 494 DADILVYNIAIDGMCRAGELEAARDLFSNLSCQG 527



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 170/333 (51%), Gaps = 9/333 (2%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N L  A   +  M  +   P       L+ ++ K          +  +M + G  PD YT
Sbjct: 91  NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMK-HYSTVLSLSTQMDSFGIPPDVYT 149

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
              LIN  C L ++  A  +  ++    C P   T+ +LI GLC    + EA+ LF++  
Sbjct: 150 LNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTI 209

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            +G +P+V TY +LM+GLCK G +S A+ LL+ M+ K  RPN++ Y+T+++ LCK+ ++ 
Sbjct: 210 GEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVT 269

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA  +   M  +G+ PD   Y  +I   C++ +++     L+EMV   I PN + +S   
Sbjct: 270 EAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFS--- 326

Query: 374 RIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
               TVV  LCK      A  V   M  R +  D +TY++L+   C + ++ ++ ++ D 
Sbjct: 327 ----TVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDT 382

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +V  GC+P+  +++ ++      ++M +A  LL
Sbjct: 383 MVHKGCVPNVRSYNILINGYCQIQRMDKAMGLL 415



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 145/305 (47%), Gaps = 8/305 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T+D A   F  M +    P +  +  L+  + ++        L  +M++    P V T  
Sbjct: 92  TLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLN 151

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN  C  + +  A  +  ++   G +P+  T+++L+ GLC  G   +A+ L    I +
Sbjct: 152 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 211

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +P++VTY TL+NGLCK G    A+ +L  M  +  +P+   Y  II   C   +  EA
Sbjct: 212 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 271

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
            N   EM+  GI+P+  T+       N+++  LC     +     L+ M N  I  + + 
Sbjct: 272 FNLFSEMITKGISPDIFTY-------NSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVV 324

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           +S+++   CK+G I  +  +VD ++  G  PD  T++A+M     R +M +A ++    +
Sbjct: 325 FSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMV 384

Query: 470 MNKCV 474
              CV
Sbjct: 385 HKGCV 389


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 228/452 (50%), Gaps = 45/452 (9%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++ +  +  +++AL+  D+  A    GF+ D   +  +I  L    + R A DL
Sbjct: 128 ITFTTLIKGLCLKGQIHQALLFHDNVVAM---GFQLDQVGYGTLIHGLCKVGETRAALDL 184

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L RV+         ++ +I  G  +     DA  ++ +M   G  P   +Y  +++    
Sbjct: 185 LRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFT 244

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             QLK A   +  M    I+P V + N+L+   CK+ G M     +F  M  +G  P+  
Sbjct: 245 VGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKD-GKMKEGKTVFAMMMKQGIKPNVV 303

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +L++G C + ++ +AK +   M  +  +P + +Y  LI+G C+ K V+EAM LF+EM
Sbjct: 304 TYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEM 363

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             K + P+V TY+SL+DGLCK G  S A++L+  M  +   P+I+TYS++L+ LCK  ++
Sbjct: 364 HHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQV 423

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            +A+ +L ++K QG++P+   Y  +I   C  G+ ++A N  +++++ G           
Sbjct: 424 DKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG----------- 472

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
                                        +I+V+  TY+ +I  FC KG   ++  ++ +
Sbjct: 473 ----------------------------YNITVN--TYTVMIHGFCNKGLFDEALALLSK 502

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +  + C+PD  T+  ++ +L+D+ +  +A +L
Sbjct: 503 MKDNSCIPDAVTYEIIIRSLFDKDENDKAEKL 534



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 188/358 (52%), Gaps = 12/358 (3%)

Query: 112 KEFGCEPTPKSYITVLAILVE---ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           K  G     K Y TVL++  +   E    + F F    + +G  P   +   LIK LC  
Sbjct: 81  KILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHPNTITFTTLIKGLCL- 139

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A      +   G   D   YGTLI+GLC++G+   A +L + ++     P VV 
Sbjct: 140 KGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVM 199

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y+++I+G+C+ K V +A  L+ EM SKG+ PNV TYS+L+ G    G    A++L   MI
Sbjct: 200 YSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMI 259

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +  +P++ T++ L++G CK+GK++E   +   M  QG+KP+   Y  ++  +C + +  
Sbjct: 260 LENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVN 319

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           +A + L  M   G+ P+       I+ +N ++ G CK    + A  ++  M ++ I  D 
Sbjct: 320 KAKSILYTMSQRGVNPD-------IQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDV 372

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY+SLI   CK G I  + ++VDE+   G  PD  T+S+++ AL    ++ +A  LL
Sbjct: 373 VTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALL 430



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 198/395 (50%), Gaps = 15/395 (3%)

Query: 88  FLSICRGY---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           F ++ +G    G++H+   A+   D +   G +     Y T++  L +  + + A    R
Sbjct: 130 FTTLIKGLCLKGQIHQ---ALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLR 186

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            +    +QP V   + +I  +CK+    DA F ++ EM ++G +P+  TY  LI+G   +
Sbjct: 187 RVDGNLVQPNVVMYSTIIDGMCKDKHVNDA-FDLYSEMVSKGISPNVVTYSALISGFFTV 245

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G++ +A +LF +M  +   P V T+  L++G C+   ++E   +F  M  +G++PNV TY
Sbjct: 246 GQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTY 305

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            SLMDG C     ++A  +L  M  +   P+I +Y+ L++G CK  K+ EA+ +   M  
Sbjct: 306 CSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHH 365

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           + + PD   Y  +I   C +GK   A   +DEM   G+ P+ +T+S       +++  LC
Sbjct: 366 KHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYS-------SILDALC 418

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K    ++A  +   ++++ I  +  TY+ LI   CK G +  +  I ++L++ G      
Sbjct: 419 KNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVN 478

Query: 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           T++ ++    ++    +A  LL     N C+   V
Sbjct: 479 TYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAV 513



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 178/338 (52%), Gaps = 5/338 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K VN A   FD  +   + G   +  T+S +IS   +  Q + A DL +++  E     
Sbjct: 210 DKHVNDA---FDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPD 266

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              F  +  G+ +  +  +   VF  M + G +P   +Y +++       ++  A     
Sbjct: 267 VYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILY 326

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M + G+ P + S N+LI   CK    +D A  +F+EM ++   PD  TY +LI+GLC+L
Sbjct: 327 TMSQRGVNPDIQSYNILIDGFCK-IKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKL 385

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           GKI  A +L  EM  +   P ++TY+S+++ LC++  V++A+ L  +++ +G+ PN++TY
Sbjct: 386 GKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTY 445

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + L+DGLCKGG    A  + + ++ K +   + TY+ +++G C +G   EA+ +L +MK 
Sbjct: 446 TILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKD 505

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
               PDA  Y  II    D  +  + A  L EM+  G+
Sbjct: 506 NSCIPDAVTYEIIIRSLFDKDE-NDKAEKLREMITRGL 542


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 216/451 (47%), Gaps = 31/451 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D   ++ +IS L  A +   A   L  +           F +   GY +  +  +
Sbjct: 502 SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTE 561

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A + FD+M + G  P    Y  ++    +   L  A   +R +  +G+ P V + +  I 
Sbjct: 562 AAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIH 621

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L KN G +  A K+F E+  +G  PD +TY +LI+G C+ G++ +A EL  EM  K  +
Sbjct: 622 GLLKN-GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 680

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P +  Y +L++GLC+S  ++ A +LF+ M  KG+EP+  TYS+++DG CK    ++A  L
Sbjct: 681 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 740

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M SK  +P+   Y+ L++G CKEG +++A+ +   M  +G       +  +I  +C 
Sbjct: 741 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCK 799

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH-------------------NTVVQGLC 384
             K QEA+    EM+   I P+ +T++  I  H                   N +V  + 
Sbjct: 800 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVT 859

Query: 385 KTD----------PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            T            +  F ++  M  + +  D +TY  +I   CK+ ++ ++ ++ DE+V
Sbjct: 860 YTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVV 919

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G L        ++TAL  R  + +A++LL
Sbjct: 920 GKGMLTKGTIHDLLITALCKREDLTEASKLL 950



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 215/423 (50%), Gaps = 10/423 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   +N  ++++I+    A     A  +  R++            +   G  +  R  +
Sbjct: 572 HGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQE 631

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A++VF ++KE G  P   +Y ++++   ++ +++ AF  +  M   GI P +   N L+ 
Sbjct: 632 ALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVD 691

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK SG +  A K+F  MP +G  PDS TY T+I+G C+   + EA  LF EM +K   
Sbjct: 692 GLCK-SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQ 750

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    Y +L++G C+   +E+AM LF EM  KG      ++++L+DG CK     +A +L
Sbjct: 751 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQL 809

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            Q MI+K+  P+ VTY+T+++  CK GK++EA  +   M+ + L  D   Y  ++  +  
Sbjct: 810 FQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNK 869

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           +G+  E     ++MV  G+ P+ +T+ L I  H       CK D    AF++   +  + 
Sbjct: 870 LGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAH-------CKEDNLVEAFKLRDEVVGKG 922

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +      +  LIT  CK+ D+ ++++++DE+   G  P     + ++ +  +  KM +A 
Sbjct: 923 MLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEAT 982

Query: 463 ELL 465
            + 
Sbjct: 983 RVF 985



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 215/428 (50%), Gaps = 19/428 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFL--SICRGYGRVHR 100
           +G + +   +S++I    S  +   A  LLD ++   C  +  DIF   +I     +  +
Sbjct: 467 SGLKPNVVVYSILIMAYASEGRIEEARRLLDGMS---CSGVAPDIFCYNAIISCLSKAGK 523

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A     +++  G +P   ++   +    +  ++  A +++  M + G+ P      V
Sbjct: 524 MEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTV 583

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI    K +G +  A  IFR +   G  PD  T    I+GL + G++ EA ++F E++ K
Sbjct: 584 LINGHFK-AGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEK 642

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P V TY+SLI+G C+   VE+A  L +EM  KG+ PN+F Y++L+DGLCK G   +A
Sbjct: 643 GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRA 702

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +L   M  K   P+ VTYST+++G CK   + EA  +   M  +G++P + +Y  ++  
Sbjct: 703 RKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHG 762

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
            C  G  ++A N   EM+  G      T S      NT++ G CK+     A Q++  M 
Sbjct: 763 CCKEGDMEKAMNLFREMLQKGFAT---TLSF-----NTLIDGYCKSCKIQEASQLFQEMI 814

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            + I  D +TY+++I   CK G + ++  +  E+     + D  T++++M   +   K+ 
Sbjct: 815 AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLM---YGYNKLG 871

Query: 460 QAAELLLL 467
           Q++E+  L
Sbjct: 872 QSSEVFAL 879



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 219/481 (45%), Gaps = 65/481 (13%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ ++  L      R A+ +L  ++++  +  E I+  +  G  +V    +A+ + 
Sbjct: 227 DVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELK 286

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M E G  P   +Y  + A L    ++  A   +  M++ G++P   + + LI    + 
Sbjct: 287 RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR- 345

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D   +I   M + G   +  TY  LI+GLC+ GK+ +A E+ K M T  C P   T
Sbjct: 346 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRT 405

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  LI G C+  ++  A+ L +EM  + + P+  +Y ++++GLC     S A +LL+ M 
Sbjct: 406 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 465

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC-------- 340
               +PN+V YS L+     EG+++EA  +LD M   G+ PD   Y  IISC        
Sbjct: 466 FSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKME 525

Query: 341 ---------------------------FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
                                      +   GK  EAA + DEM+  G+ PN   +++ I
Sbjct: 526 EASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLI 585

Query: 374 -----------------RIH-----------NTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
                            R+H           +  + GL K      A +V+  ++ + + 
Sbjct: 586 NGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLV 645

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D  TYSSLI+ FCK+G++ K+  + DE+ L G  P+   ++A++  L     +++A +L
Sbjct: 646 PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKL 705

Query: 465 L 465
            
Sbjct: 706 F 706



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 204/416 (49%), Gaps = 29/416 (6%)

Query: 28   VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DITE 85
            V +AL +F     +   G   D  T+S +IS      +   A +L D    E C   I  
Sbjct: 629  VQEALKVFSELKEK---GLVPDVFTYSSLISGFCKQGEVEKAFELHD----EMCLKGIAP 681

Query: 86   DIFL------SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
            +IF+       +C+  G + R   A ++FD M E G EP   +Y T++    +   +  A
Sbjct: 682  NIFIYNALVDGLCKS-GDIQR---ARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 737

Query: 140  FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
            F  +  M   G+QP     N L+   CK  G M+ A  +FREM  +G    + ++ TLI+
Sbjct: 738  FSLFHEMPSKGVQPHSFVYNALVHGCCK-EGDMEKAMNLFREMLQKGFAT-TLSFNTLID 795

Query: 200  GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
            G C+  KI EA +LF+EM  K   P  VTYT++I+  C++  +EEA  LF+EM+ + +  
Sbjct: 796  GYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIV 855

Query: 260  NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
            +  TY+SLM G  K G SS+   L + M++K  +P+ VTY  ++   CKE  L EA ++ 
Sbjct: 856  DTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLR 915

Query: 320  DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
            D +  +G+     ++  +I+  C      EA+  LDEM   G+ P+       +   NT+
Sbjct: 916  DEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPS-------LAACNTL 968

Query: 380  VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            V+   +    + A +V+  +++  +  D+ T   L+       D   +  ++ +LV
Sbjct: 969  VRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 1024



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 154/308 (50%), Gaps = 9/308 (2%)

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N L+K L K  G M+  +K++  M +     D YTY  L+  LC+ G +  AK +  EM+
Sbjct: 197 NSLLKDLLK-CGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMD 255

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            K  +P    Y+ +I G+CQ   ++EA+ L   M  KG+ PN +TY+ +  GLC+    +
Sbjct: 256 EKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMN 315

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A    + M     +P+    S L++G  +EG + E + I D M   G+  +   Y  +I
Sbjct: 316 EAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLI 375

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
              C  GK ++AA  L  MV  G  PN  T+ L       +++G C+  +  RA ++   
Sbjct: 376 HGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCL-------LIEGYCREHNMGRALELLDE 428

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M  R++   +++Y ++I   C   D+  + ++++++   G  P+   +S ++ A     +
Sbjct: 429 MEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGR 488

Query: 458 MRQAAELL 465
           + +A  LL
Sbjct: 489 IEEARRLL 496



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 148/317 (46%), Gaps = 11/317 (3%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P V   ++LI +  K  G +D A  +F    N           +L+  L + G +  
Sbjct: 155 GSSPVV--FDILIDSY-KRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMEL 211

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
             +++  M        V TYT L+  LC++  +  A R+  EM  KG+ PN F YS +++
Sbjct: 212 FWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIE 271

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G+C+ G   +A+EL + M  K   PN  TY+ +  GLC+  ++ EA    + M+  GLKP
Sbjct: 272 GMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKP 331

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
           D      +I  F   G   E     D MV  GI  N +T+       N ++ GLCK    
Sbjct: 332 DYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITY-------NVLIHGLCKFGKM 384

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
            +A ++   M       +S T+  LI  +C++ ++ ++  ++DE+     +P   ++ A+
Sbjct: 385 EKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAM 444

Query: 449 MTALWDRRKMRQAAELL 465
           +  L   + +  A +LL
Sbjct: 445 INGLCHCKDLSLANKLL 461



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 161/365 (44%), Gaps = 36/365 (9%)

Query: 126 VLAILVEENQL----KLAFRFYRHMREIGIQPCVASLNVLIKALCKN------------- 168
           V+  ++ +NQ+    +L   FY    ++G+   + S ++L   LC +             
Sbjct: 73  VIRAVLHQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLTQM 132

Query: 169 -------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
                  S  +D+    FR     G +P    +  LI+   R+G + EA  +F   +  +
Sbjct: 133 IRTPYSSSSILDSVLFWFRNYG--GSSP--VVFDILIDSYKRMGMLDEAANVFFVAKNDS 188

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
              +++   SL+  L +   +E   +++  M    +  +V+TY+ L+  LCK G    A 
Sbjct: 189 ILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAK 248

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            +L  M  K   PN   YS ++ G+C+ G + EAVE+   M  +GL P+   Y  I +  
Sbjct: 249 RVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGL 308

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C   +  EA    +EM   G+ P+    S        ++ G  +  D +   ++   M +
Sbjct: 309 CRAKRMNEAKLTFEEMQKTGLKPDYNACS-------ALIDGFMREGDIDEVLRIKDVMVS 361

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             I ++ +TY+ LI   CK G + K+A I+  +V  GC P+  T+  ++        M +
Sbjct: 362 CGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGR 421

Query: 461 AAELL 465
           A ELL
Sbjct: 422 ALELL 426


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  201 bits (511), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 191/365 (52%), Gaps = 19/365 (5%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMR---EIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           SY TVL  L        A    R M        +P   S  VL++ALC +    D A  +
Sbjct: 79  SYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADR-LADQAVGL 137

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
            R M + G   D  TYGTLI GLC   ++ +A EL  EM      P VV Y+SL+ G C+
Sbjct: 138 LRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCK 197

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           S   E+  ++F EM  KG+EP+V  Y+ L+D LCK G + +A  ++ MM+ +   PN+VT
Sbjct: 198 SGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVT 257

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y+ L+N +CKEG ++EA+ +L +M  +G+ PD   Y  +I    D+ +  EA   L+EMV
Sbjct: 258 YNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMV 317

Query: 359 LGG--ITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLIT 415
            G   + PN +T+       N+V+QGLC     R AFQV   M      V+ +TY+ LI 
Sbjct: 318 RGKNIVKPNVVTF-------NSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIG 370

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA--AELLLLELMNKC 473
              +   + K+  ++DE+   G  PD  T+S ++       KM Q   AE LL  + ++ 
Sbjct: 371 GLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFC---KMWQVDRAEDLLSTMRDRG 427

Query: 474 VEAEV 478
           +E E+
Sbjct: 428 IEPEL 432



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 211/424 (49%), Gaps = 12/424 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  T+  +I  L  A +   A +L+  + +   +    ++ S+ +GY +  R  D 
Sbjct: 145 GVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDV 204

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            +VF +M E G EP    Y  ++  L +  + K A      M   G++P V + NVLI  
Sbjct: 205 GKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINC 264

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKAC 222
           +CK  G++  A  + ++M  +G  PD  TY TLI GL  + ++ EA  L +EM       
Sbjct: 265 MCK-EGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIV 323

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVT+ S+I GLC    + +A ++   M   G   N+ TY+ L+ GL +     +AME
Sbjct: 324 KPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAME 383

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L+  M S    P+  TYS L+ G CK  ++  A ++L  M+ +G++P+   Y  ++   C
Sbjct: 384 LMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMC 443

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
           + G  + A N  +EM           + L +  ++T++ G CK  D   A ++  S+ + 
Sbjct: 444 EQGMMERARNLFNEM--------DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDE 495

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            ++ D++TYS +I  F K GD+  +  ++ ++   G LPD   + +++     + ++ + 
Sbjct: 496 GLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKV 555

Query: 462 AELL 465
            EL+
Sbjct: 556 LELI 559



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 194/399 (48%), Gaps = 45/399 (11%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +   M+  G      +Y T++  L +  ++  A      M E GI+P V   + L++
Sbjct: 134 AVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 193

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK SG  +   K+F EM  +G  PD   Y  LI+ LC++GK  +A  +   M  +   
Sbjct: 194 GYCK-SGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLE 252

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY  LIN +C+  SV+EA+ + ++M  KGV P+V TY++L+ GL       +AM L
Sbjct: 253 PNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWL 312

Query: 284 LQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           L+ M+  ++  +PN+VT+++++ GLC  G++++A ++   M+  G   +   Y  +I   
Sbjct: 313 LEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGL 372

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
             + K ++A   +DEM   G+ P+  T+S+       +++G CK    +RA  +  +MR+
Sbjct: 373 LRVHKVRKAMELMDEMTSLGLEPDSFTYSI-------LIKGFCKMWQVDRAEDLLSTMRD 425

Query: 401 RSIS----------------------------------VDSLTYSSLITCFCKKGDIHKS 426
           R I                                   +D + YS++I   CK GD+  +
Sbjct: 426 RGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTA 485

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             ++  +V +G  PD  T+S V+        M  A  +L
Sbjct: 486 KELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVL 524



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 150/281 (53%), Gaps = 13/281 (4%)

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK---ACSPTVVTYTSLINGLCQSKSVEEAM 246
           D+ +Y T++  LCR G    A  L + M  +   AC P  V+YT L+  LC  +  ++A+
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            L   MRS GV  +V TY +L+ GLC      +A+EL+  M      PN+V YS+LL G 
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CK G+ ++  ++   M  +G++PD  +Y  +I   C +GK ++A   +D MV  G+ PN 
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNV 255

Query: 367 LTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           +T+       N ++  +CK      A  V   M  + ++ D +TY++LI       ++ +
Sbjct: 256 VTY-------NVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDE 308

Query: 426 SARIVDELVLDGCL--PDEGTWSAVMTALWDRRKMRQAAEL 464
           +  +++E+V    +  P+  T+++V+  L D  +MRQA ++
Sbjct: 309 AMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV 349



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 108/234 (46%), Gaps = 5/234 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++L+I  L+  ++ R A +L+D +     +     +  + +G+ ++ +   A  +   M
Sbjct: 364 TYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTM 423

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           ++ G EP    YI +L  + E+  ++ A   +  M +      V + + +I   CK +G 
Sbjct: 424 RDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACK-AGD 481

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A ++ + + + G TPD+ TY  +IN   + G +  A  + K+M      P V  + S
Sbjct: 482 LKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDS 541

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           LI G      + + + L  EM +K +  +    S+L   L     S++   LLQ
Sbjct: 542 LIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLV---ASNEGKALLQ 592



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 49/226 (21%)

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK--------------------------- 311
           +A  LL  + S R   + V+Y+T+L  LC+ G                            
Sbjct: 63  EATSLLDALPSVR---DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYT 119

Query: 312 -----------LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
                        +AV +L  M+  G++ D   YG +I   CD  +  +A   + EM   
Sbjct: 120 VLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCES 179

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           GI PN       + ++++++QG CK+       +V++ M  + I  D + Y+ LI   CK
Sbjct: 180 GIEPN-------VVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G   K+  ++D +V  G  P+  T++ ++  +     +++A  +L
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVL 278



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 19/244 (7%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL----DRV 76
           L+R  K V KA+ + D  T+    G   D+ T+S++I       Q   AEDLL    DR 
Sbjct: 372 LLRVHK-VRKAMELMDEMTSL---GLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRG 427

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQ 135
            + +      + +++C   G + R   A  +F++M   F  +    +Y T++    +   
Sbjct: 428 IEPELFHYIPLLVAMCE-QGMMER---ARNLFNEMDNNFPLDVV--AYSTMIHGACKAGD 481

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           LK A    + + + G+ P   + +++I    K SG M+AA  + ++M   G  PD   + 
Sbjct: 482 LKTAKELLKSIVDEGLTPDAVTYSIVINMFAK-SGDMEAANGVLKQMTASGFLPDVAVFD 540

Query: 196 TLINGLCRLGKIYEAKELFKEMETKAC---SPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +LI G    G+I +  EL +EM TK     S  + T ++ +    + K++ +++  F   
Sbjct: 541 SLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNEGKALLQSLPDFSAE 600

Query: 253 RSKG 256
            SKG
Sbjct: 601 ISKG 604


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  201 bits (511), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 218/463 (47%), Gaps = 51/463 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  T+  ++  L    +F   E++++ + +     +E    ++  G  +      A
Sbjct: 280 GLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSA 339

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + +K+K+FG  P+   Y  ++  + ++ +L  A   + +M   G+ P   + ++LI +
Sbjct: 340 FDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDS 399

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +D A     +M   G     Y Y +LI+G C+LGK+  AK LF EM      P
Sbjct: 400 FCKR-GKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKP 458

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV YTSLI+G C+   +  A RL+ EM  KG+ PN +T+++L+ GLC     ++A +L 
Sbjct: 459 NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLF 518

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+     PN VTY+ L+ G CKEG    A E+LD M  +GL PD   Y  +IS  C  
Sbjct: 519 GEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCST 578

Query: 345 GKYQEAANFLDEMV--------LGGITPNRLTWSLHIRIHNTVVQGLCKTD--------- 387
           G+  EA  F++++         + G  PN +T++        ++ GLCK           
Sbjct: 579 GRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYT-------ALINGLCKIGLMDKAELLC 631

Query: 388 ---------PNR----AFQVYLSMRN-------------RSISVDSLTYSSLITCFCKKG 421
                    PN+     F  YL+                     +++TY+ LI  FCK G
Sbjct: 632 REMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLG 691

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            I ++A ++  ++  G  PD  ++S ++     R  +++A +L
Sbjct: 692 RIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKL 734



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 220/449 (48%), Gaps = 21/449 (4%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           AL +FD   +   +G R D   ++ ++  L     F  A +++ R+    CD++   +  
Sbjct: 199 ALHLFDEIVS---SGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNV 255

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
             RG  +  R  +A+ + + +   G      +Y T++  L +  + +        M E G
Sbjct: 256 FIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFG 315

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
             P  A+++ L+  L +  G + +AF +  ++   G  P  + Y  LIN +C+ GK+ EA
Sbjct: 316 FVPSEAAVSNLVDGL-RKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEA 374

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           + LF  M  K   P  VTY+ LI+  C+   ++ A+    +M   G++  V+ YSSL+ G
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
            CK G    A  L   MI+   +PN+V Y++L++G CKEG+L  A  +   M  +G+ P+
Sbjct: 435 HCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPN 494

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
              +  +IS  C   +  EA     EMV   + PN +T+       N +++G CK  +  
Sbjct: 495 TYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTY-------NVLIEGHCKEGNTV 547

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV--------LDGCLPD 441
           RAF++   M  + +  D+ TY  LI+  C  G + ++   +++L         ++GCLP+
Sbjct: 548 RAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPN 607

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELM 470
             T++A++  L  +  +   AELL  E++
Sbjct: 608 VVTYTALINGLC-KIGLMDKAELLCREML 635



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 194/384 (50%), Gaps = 18/384 (4%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           +S +IS      + R A+ L D +          I+ S+  GY +     +A R++ +M 
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMT 487

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G  P   ++  +++ L   N++  A + +  M E  + P   + NVLI+  CK   T+
Sbjct: 488 GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTV 547

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--------ETKACSP 224
             AF++  EM  +G  PD+YTY  LI+GLC  G++ EA+E   ++        E + C P
Sbjct: 548 -RAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLP 606

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+LINGLC+   +++A  L  EM +    PN  TY+  +D L   G   +A++L 
Sbjct: 607 NVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH 666

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +++ +    N VTY+ L+ G CK G++QEA E+L  M   G+ PD   Y  II  +C  
Sbjct: 667 DVLL-EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRR 725

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           G  +EA    + M+  G+ P+ + +       N ++ G C T +  +AF++   M  R +
Sbjct: 726 GDLKEAIKLWESMLNRGVNPDTVAY-------NFLIYGCCVTGELTKAFELRDDMMRRGV 778

Query: 404 SVDSLTYSSLITCFCKKGDIHKSA 427
             +  TY+SLI   C    +  +A
Sbjct: 779 KPNRATYNSLIHGTCLMSSVSSTA 802



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 221/475 (46%), Gaps = 52/475 (10%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           LI+   D   AL  F+         F H  ++F ++I  LV +N + PA  LL  +    
Sbjct: 66  LIQTLDDSRLALRFFNFLGLH--KNFDHSTTSFCILIHALVQSNLYWPASSLLQTLLLRG 123

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL-A 139
            +  E +F S           LD+ R  +     G +   ++Y+        +N+ +L  
Sbjct: 124 LN-PEGLFESF----------LDSYRKCNFSTTLGFDLLIQTYV--------QNRRELDG 164

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
               R M + GI P + +L+ ++  L +       A  +F E+ + G  PD Y Y  ++ 
Sbjct: 165 LVVVRLMMDCGILPQIRTLSGVLNGLIRIR-QFRMALHLFDEIVSSGLRPDVYVYTAVVR 223

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
            LC L     A+E+   ME+  C  +V TY   I GLC+++ V EA+ +   +  KG+  
Sbjct: 224 SLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRA 283

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +V TY +L+ GLCK        E++  MI     P+    S L++GL K+G +  A +++
Sbjct: 284 DVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLV 343

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS--------- 370
           +++K  G+ P   +Y  +I+  C  GK  EA +  + M   G+ PN +T+S         
Sbjct: 344 NKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKR 403

Query: 371 --LHIRIH-----------------NTVVQGLCKTDPNRAFQ-VYLSMRNRSISVDSLTY 410
             L + +H                 ++++ G CK    RA + ++  M    +  + + Y
Sbjct: 404 GKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +SLI+ +CK+G++H + R+  E+   G  P+  T++A+++ L    +M +A +L 
Sbjct: 464 TSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLF 518



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 172/397 (43%), Gaps = 53/397 (13%)

Query: 1   MGVK-TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISK 59
           +G+K T++ +S+ I+    L  +RA K       +FD   A   NG + +   ++ +IS 
Sbjct: 419 VGIKATVYPYSSLISGHCKLGKLRAAKS------LFDEMIA---NGLKPNVVIYTSLISG 469

Query: 60  LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
                +   A  L   +  +        F ++  G    +R  +A ++F +M E+   P 
Sbjct: 470 YCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPN 529

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
             +Y  ++    +E     AF     M E G+ P   +   LI  LC ++G +  A +  
Sbjct: 530 EVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC-STGRVSEAREFM 588

Query: 180 REMPNR--------GCTPDSYTYGTLINGLCRLGKIYEAKELFKEM---------ETKAC 222
            ++           GC P+  TY  LINGLC++G + +A+ L +EM          T AC
Sbjct: 589 NDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYAC 648

Query: 223 S-------------------------PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
                                        VTY  LI G C+   ++EA  +   M   G+
Sbjct: 649 FLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGI 708

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P+  +YS+++   C+ G   +A++L + M+++   P+ V Y+ L+ G C  G+L +A E
Sbjct: 709 SPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFE 768

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           + D M  +G+KP+   Y  +I   C +      A++ 
Sbjct: 769 LRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTADYF 805



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 13/151 (8%)

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G+ P       +++    I +++ A +  DE+V  G+ P+       + ++  VV+ LC+
Sbjct: 175 GILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPD-------VYVYTAVVRSLCE 227

Query: 386 -TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             D  RA +V   M +    +   TY+  I   CK   + ++  I + L   G   D GT
Sbjct: 228 LKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGT 287

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
           +  ++  L    +  +A E    E+MN+ +E
Sbjct: 288 YCTLVLGLCKVEEF-EAGE----EMMNEMIE 313


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 199/393 (50%), Gaps = 31/393 (7%)

Query: 103 DAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           DA+ +F K+ +E  CEP    Y TV+  L +    +      R M +   +P V + +++
Sbjct: 150 DAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIV 209

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I ALCK+   +DAA  +  EM  +   P+ +TY +LI+GLC+LG+  + K L  EM    
Sbjct: 210 IDALCKDI-NLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLN 268

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            +P V T++ LI+GLC+   VE+A  +   M  KGVEP++ TYS++MDG C  G   +A 
Sbjct: 269 INPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRAR 328

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            +  ++  K  +PNI +YS L+NG CK+  L +A+++   +  +GLKPD   Y  I+   
Sbjct: 329 RVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGL 388

Query: 342 CDIGKYQEAANFLDEMVLGGITPN----------------------------RLTWSLHI 373
            ++G+  +A    DEM+  G TP+                            R     +I
Sbjct: 389 IEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNI 448

Query: 374 RIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
             +  V+ GLCK D  R A  ++  + +  +  D  TY+ +IT FC++G   +   I+ +
Sbjct: 449 SFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRK 508

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  +GC  +  T++ +M   +   K+ +    +
Sbjct: 509 MEDNGCPANNITYNVIMQGFFRSNKISEIVSFM 541



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 178/337 (52%), Gaps = 9/337 (2%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           +++  AF       + GI   V + N L+  L   +   DA     + +  + C P+   
Sbjct: 111 HRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVM 170

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           YGT++NGL + G   +   L + ME     P V TY+ +I+ LC+  +++ A+ L  EM+
Sbjct: 171 YGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMK 230

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            K + PN+FTY+SL+DGLCK G   +   LL  M++    PN+ T+S L++GLCKEGK++
Sbjct: 231 QKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVE 290

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +A E++  M  +G++PD   Y  I+  +C  G+   A    + +   GI PN  ++S+  
Sbjct: 291 DADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSI-- 348

Query: 374 RIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
                ++ G C K +  +A Q++  +  + +  D++TYS+++    + G I  + +I DE
Sbjct: 349 -----LINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDE 403

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           ++  G  PD    S ++   + +  + + A LL  +L
Sbjct: 404 MLRVGPTPDICLHSTLLFGYF-KYGLVEEAMLLFSKL 439



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 179/365 (49%), Gaps = 10/365 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M      P+   +  +   ++           +R MR +GI    + LN++ 
Sbjct: 45  DAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVT 104

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKA 221
            + C     +D AF +       G   +  T+ TL+ GL    K+ +A  LFK++   K 
Sbjct: 105 NSYCLRH-RIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKI 163

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P  V Y +++NGL +    E+ + L   M     +P+V TYS ++D LCK      A+
Sbjct: 164 CEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAI 223

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL  M  K   PNI TY++L++GLCK G+ ++   +L  M    + P+   +  +I   
Sbjct: 224 NLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGL 283

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRN 400
           C  GK ++A   +  M+  G+ P+ +T+S        ++ G C +   +RA +V+  +R+
Sbjct: 284 CKEGKVEDADEVMRHMIEKGVEPDIITYS-------AIMDGYCLRGQVDRARRVFNVLRD 336

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + I  +  +YS LI  +CKK ++ K+ ++  E+   G  PD  T+S ++  L +  ++  
Sbjct: 337 KGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGD 396

Query: 461 AAELL 465
           A ++ 
Sbjct: 397 AKKIF 401



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 186/374 (49%), Gaps = 13/374 (3%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLDA 104
           + D  T+S++I  L        A +LL+ + ++  +I  +IF   S+  G  ++ +    
Sbjct: 200 KPDVRTYSIVIDALCKDINLDAAINLLNEMKQK--NIPPNIFTYNSLIDGLCKLGQWEKV 257

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +M      P   ++  ++  L +E +++ A    RHM E G++P + + + ++  
Sbjct: 258 KTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDG 317

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +D A ++F  + ++G  P+ ++Y  LING C+   + +A +LF E+  K   P
Sbjct: 318 YCL-RGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKP 376

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY+++++GL +   + +A ++F+EM   G  P++  +S+L+ G  K G   +AM L 
Sbjct: 377 DTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLF 436

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +   R   NI  Y+ ++NGLCK  +++EA  I +++   GL PD   Y  +I+ FC  
Sbjct: 437 SKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCRE 496

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSI 403
           G + E    L +M   G   N +T+       N ++QG  +++       ++  M  R  
Sbjct: 497 GLFDEVKGILRKMEDNGCPANNITY-------NVIMQGFFRSNKISEIVSFMKEMAGRGF 549

Query: 404 SVDSLTYSSLITCF 417
           S D+ T   LI   
Sbjct: 550 SFDATTTGVLINVL 563



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 10/272 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A  LF  M      P+V+ ++ L   +   K     + LF EMR  G+  +    + + 
Sbjct: 45  DAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVT 104

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL- 327
           +  C       A  +L + +      N+VT++TLL GL  E K+ +AV +  ++  + + 
Sbjct: 105 NSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKIC 164

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-T 386
           +P+  +YG +++     G  ++  + L  M  G   P+  T+S+       V+  LCK  
Sbjct: 165 EPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSI-------VIDALCKDI 217

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           + + A  +   M+ ++I  +  TY+SLI   CK G   K   ++ E+V     P+  T+S
Sbjct: 218 NLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFS 277

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            ++  L    K+  A E ++  ++ K VE ++
Sbjct: 278 ILIDGLCKEGKVEDADE-VMRHMIEKGVEPDI 308



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 1/227 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  ++S++I+          A  L   ++++        + +I  G   V R  DA
Sbjct: 338 GIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDA 397

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++FD+M   G  P    + T+L    +   ++ A   +  +        ++   V+I  
Sbjct: 398 KKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVING 457

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN    +A   IF ++P+ G  PD  TY  +I G CR G   E K + ++ME   C  
Sbjct: 458 LCKNDRVREAH-AIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPA 516

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
             +TY  ++ G  +S  + E +   +EM  +G   +  T   L++ L
Sbjct: 517 NNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVL 563



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 8/220 (3%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K++ KA+ +F   + +   G + D  T+S ++  L+   +   A+ + D +   +   T
Sbjct: 356 KKNLAKAMQLFGEISQK---GLKPDTVTYSTILHGLIEVGRIGDAKKIFDEM--LRVGPT 410

Query: 85  EDIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            DI L  ++  GY +     +AM +F K++    +     Y  V+  L + ++++ A   
Sbjct: 411 PDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAI 470

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +  +  IG+ P V + NV+I   C+  G  D    I R+M + GC  ++ TY  ++ G  
Sbjct: 471 FEKLPSIGLIPDVRTYNVMITGFCR-EGLFDEVKGILRKMEDNGCPANNITYNVIMQGFF 529

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
           R  KI E     KEM  +  S    T   LIN L ++ S+
Sbjct: 530 RSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKENPSI 569


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 217/454 (47%), Gaps = 48/454 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDK 110
           T++++I     A +       L  V K+   +    F  + +G     R  DAM  V  +
Sbjct: 94  TYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRR 153

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REIGIQPCVASLNVLIKALCK 167
           M E GC P   SY  +L  L +EN+ + A      M   R  G  P V S N ++    K
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G  D A+  + EM +RG  PD  TY ++I  LC+   + +A E+   M      P  +
Sbjct: 214 -EGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 272

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY S+++G C S   +EA+   ++MRS GVEPNV TYSSLM+ LCK G S++A ++   M
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD--------------------------- 320
             +   P+I TY TLL G   +G L E   +LD                           
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKV 392

Query: 321 --------RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
                   +M+  GL P+   YG +I   C  G   +A  + ++M+  G+TPN       
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN------- 445

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           I ++ +++ GLC  D  ++A ++ L M +R I ++++ ++S+I   CK+G + +S ++ D
Sbjct: 446 IIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD 505

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +V  G  PD  T++ ++       KM +A +LL
Sbjct: 506 LMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 229/463 (49%), Gaps = 12/463 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++  +   + ++KA+ + ++      NG   D  T++ ++    S+ Q + A   
Sbjct: 237 VTYSSIIAALCKAQAMDKAMEVLNTMVK---NGVMPDCMTYNSILHGYCSSGQPKEAIGT 293

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++  +  +     + S+     +  R  +A ++FD M + G EP   +Y T+L     
Sbjct: 294 LKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYAT 353

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L         M   GIQP     N+LI A  K    +D A  +F +M   G  P+  
Sbjct: 354 KGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQE-KVDQAMLVFSKMRQHGLNPNVV 412

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
            YGT+I+ LC+ G + +A   F++M  +  +P ++ YTSLI+GLC     ++A  L  EM
Sbjct: 413 CYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEM 472

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+  N   ++S++D  CK G   ++ +L  +M+    +P+I+TY+TL++G C  GK+
Sbjct: 473 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L  M   G+KPD   YG +I+ +C + +  +A     EMV  G++PN +T+   
Sbjct: 533 DEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY--- 589

Query: 373 IRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               N ++QGL  T    A  ++Y+S+      ++  TY+ ++   CK     ++ R+  
Sbjct: 590 ----NIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQ 645

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            L L     +  T++ ++ AL    +M +A +L      N  V
Sbjct: 646 NLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLV 688



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 196/423 (46%), Gaps = 60/423 (14%)

Query: 99  HRPLDAMRVFDKMKEFGC---EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           H P  A+  +++M   G     PT  +Y  ++       +L L F    ++ + G +   
Sbjct: 68  HSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDA 127

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL-- 213
            +   L+K LC +  T DA   + R M   GC PD ++Y  L+ GLC   +  EA EL  
Sbjct: 128 ITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLH 187

Query: 214 ------------------------------------FKEMETKACSPTVVTYTSLINGLC 237
                                               + EM  +   P VVTY+S+I  LC
Sbjct: 188 MMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALC 247

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +++++++AM +   M   GV P+  TY+S++ G C  G   +A+  L+ M S    PN+V
Sbjct: 248 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVV 307

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TYS+L+N LCK G+  EA +I D M  +GL+PD   Y  ++  +   G   E    LD M
Sbjct: 308 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 367

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
           V  GI P+         + N ++    K +  ++A  V+  MR   ++ + + Y ++I  
Sbjct: 368 VRNGIQPDH-------HVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDV 420

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL-----WDRRKMRQAAELLLLELMN 471
            CK G +  +    ++++ +G  P+   +++++  L     WD+      AE L+LE+++
Sbjct: 421 LCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDK------AEELILEMLD 474

Query: 472 KCV 474
           + +
Sbjct: 475 RGI 477



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 188/429 (43%), Gaps = 45/429 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS T     G   D +T+  ++    +         LLD + +        +F  +  
Sbjct: 328 IFDSMTKR---GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILIC 384

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +   AM VF KM++ G  P    Y TV+ +L +   +  A  ++  M + G+ P
Sbjct: 385 AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444

Query: 154 CVASLNVLIKALCK--------------------------NS--------GTMDAAFKIF 179
            +     LI  LC                           NS        G +  + K+F
Sbjct: 445 NIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 504

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  PD  TY TLI+G C  GK+ EA +L   M +    P +VTY +LING C+ 
Sbjct: 505 DLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 564

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A+ LF+EM S GV PN+ TY+ ++ GL     ++ A EL   +     +  + TY
Sbjct: 565 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTY 624

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     EA+ +   + L  L+ +   +  +I      G+  EA +       
Sbjct: 625 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSA 684

Query: 360 GGITPNRLTWSLHIRIHNTVVQG-LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            G+ P+  T+SL     N + QG L + D      ++LSM     S DS   +S++    
Sbjct: 685 NGLVPDVRTYSL--MAENLIEQGSLEELD-----DLFLSMEENGCSADSRMLNSIVRKLL 737

Query: 419 KKGDIHKSA 427
           ++GDI ++ 
Sbjct: 738 QRGDITRAG 746



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 162/338 (47%), Gaps = 6/338 (1%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL-LDRV 76
           V+ ++     V+ A++ F+    E   G   +   ++ +I  L + +++  AE+L L+ +
Sbjct: 417 VIDVLCKSGSVDDAMLYFEQMIDE---GLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           ++  C +    F SI   + +  R +++ ++FD M   G +P   +Y T++       ++
Sbjct: 474 DRGIC-LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
             A +    M  +G++P + +   LI   C+ S  MD A  +F+EM + G +P+  TY  
Sbjct: 533 DEATKLLASMVSVGVKPDIVTYGTLINGYCRVS-RMDDALALFKEMVSSGVSPNIITYNI 591

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++ GL    +   AKEL+  +        + TY  +++GLC++   +EA+R+F+ +    
Sbjct: 592 ILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 651

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           ++    T++ ++  L K G   +A +L     +    P++ TYS +   L ++G L+E  
Sbjct: 652 LQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELD 711

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++   M+  G   D+ +   I+      G    A  +L
Sbjct: 712 DLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL 749



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 6/250 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G + D  T++ +I     A +   A  LL   +     +  DI  + ++  GY RV R  
Sbjct: 511 GVKPDIITYNTLIDGCCLAGKMDEATKLL--ASMVSVGVKPDIVTYGTLINGYCRVSRMD 568

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M   G  P   +Y  +L  L    +   A   Y  + + G Q  +++ N+++
Sbjct: 569 DALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIIL 628

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN+ T D A ++F+ +       ++ T+  +I  L + G++ EAK+LF        
Sbjct: 629 HGLCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGL 687

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TY+ +   L +  S+EE   LF  M   G   +    +S++  L + G  ++A  
Sbjct: 688 VPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGT 747

Query: 283 LLQMMISKRH 292
            L  MI ++H
Sbjct: 748 YL-FMIDEKH 756



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 47/263 (17%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F E+  +    ++      +  + +  S   A+  +  M   G   V P V TY+
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYA 96

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            L+   C+ G        L  ++ K  R + +T++ LL GLC + +  +A++I L RM  
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV--LGGITPNRLTWSLHIRIHNTVVQG 382
            G  PD   Y  ++   CD  + QEA   L  M    GG +P                  
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPP----------------- 199

Query: 383 LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
                                  D ++Y++++  F K+GD  K+     E++  G LPD 
Sbjct: 200 -----------------------DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDV 236

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T+S+++ AL   + M +A E+L
Sbjct: 237 VTYSSIIAALCKAQAMDKAMEVL 259


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 239/474 (50%), Gaps = 27/474 (5%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++AL   D   A    GF  D  ++  +I+ L    + R A +LL RV+ +   +   +
Sbjct: 156 IHQALNFHDKLVAL---GFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVM 212

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + +I     +     DA  ++ +M          +Y  +++      +LK A   +  M 
Sbjct: 213 YSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMT 272

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              I P V + N+L+ A CK  G +  A      M  +G  PD  TY +L++G C + ++
Sbjct: 273 SENINPDVYTFNILVDAFCK-EGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEV 331

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             AK +   M  +  + TV +Y  +ING C+ K V++AM+LF+EM  K + PNV TY+SL
Sbjct: 332 NMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSL 391

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGLCK G  S A+EL+ +M  +  +P+I+TYS++L+ LCK   + +A+ +L ++K QG+
Sbjct: 392 IDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGI 451

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           +P+   Y  +I   C  G+ ++A N  +++++ G       ++L +  +  ++QG C   
Sbjct: 452 RPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKG-------YNLTVNTYTVMIQGFCSHG 504

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP---DEG 443
             + A  +   M++ S   D++TY  +I     K +  K+ +++ E++  G L    + G
Sbjct: 505 LFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYG 564

Query: 444 TWSAVMTAL------------WDRRKMRQAAELLLLELMNKCVEAEVDIQNQDV 485
           +WS    A                ++    A+LLL  +   CV  + +++++DV
Sbjct: 565 SWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDCVLTKSNMRDKDV 618



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 217/440 (49%), Gaps = 15/440 (3%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI------ 87
           +F  +  +  + F+   +T    I    ++  F    D++D V+   C + ++       
Sbjct: 13  VFRVSVPKKFHPFQFPENTHFYFIHSFSTSTTFHNNNDVVDAVSLFNCLLRQNPTPPDME 72

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  I     +       + +F KM+  G +P   ++  ++    +   +  AF     + 
Sbjct: 73  FGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKIL 132

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           ++G +P   +LN  IK  C   G +  A     ++   G   D  +YGTLINGLC++G+ 
Sbjct: 133 KMGYEPDTITLNTFIKGFCL-KGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGET 191

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A EL + ++ K     VV Y+++I+ +C+ K+V +A  L+ EM S+ +  N+ TYS+L
Sbjct: 192 RAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSAL 251

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G C  G    A+ L   M S+   P++ T++ L++  CKEG+++EA   L  M  QG+
Sbjct: 252 ISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGI 311

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KPD   Y  ++  +C + +   A + L+ M   G+T         +R +N V+ G CK  
Sbjct: 312 KPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTAT-------VRSYNIVINGFCKIK 364

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             ++A +++  M ++ I  + +TY+SLI   CK G I  +  ++D +   G  PD  T+S
Sbjct: 365 MVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYS 424

Query: 447 AVMTALWDRRKMRQAAELLL 466
           +++ AL     + +A  LL+
Sbjct: 425 SILDALCKNHLVDKAIALLI 444



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 152/372 (40%), Gaps = 81/372 (21%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ ++      N+   A+ +L+ ++      T   +  +  G+ ++     A
Sbjct: 310 GIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQA 369

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M++F +M      P   +Y +++  L +  ++  A      M + G QP + + + ++ A
Sbjct: 370 MKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDA 429

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE-------- 216
           LCKN   +D A  +  ++ ++G  P+ YTY  LI+GLC+ G++ +A+ +F++        
Sbjct: 430 LCKNH-LVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNL 488

Query: 217 ---------------------------METKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
                                      M+  +C P  +TY  +I  L      ++A +L 
Sbjct: 489 TVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLL 548

Query: 250 EEMRSKGVEPNVFTY-----------------------SSLMDG---------------L 271
            EM ++G+  +   Y                       SS   G               L
Sbjct: 549 REMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDCVL 608

Query: 272 CKGGCSSQAMELLQMMI------SKR-HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            K     + +E   ++I      SK+ +  ++ TY+ ++ G C  G   E++ +L +M++
Sbjct: 609 TKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEV 668

Query: 325 QGLKPDAGLYGK 336
            G  PDA  Y +
Sbjct: 669 NGCIPDAVTYDR 680


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 215/431 (49%), Gaps = 14/431 (3%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVF 108
           ++++++I  +    + + A  LL  +  E    T D+  + ++  GY R        ++ 
Sbjct: 247 ASYNIVIHFVCQLGRIKEAHHLL--LLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + MK  G +P    Y +++ +L    +L  A   +  M   GI P       LI   CK 
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G + AA K F EM +R  TPD  TY  +I+G C++G + EA +LF EM  K   P  VT
Sbjct: 365 -GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT 423

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +T LING C++  +++A R+   M   G  PNV TY++L+DGLCK G    A ELL  M 
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 483

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
               +PNI TY++++NGLCK G ++EAV+++   +  GL  D   Y  ++  +C  G+  
Sbjct: 484 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMD 543

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDS 407
           +A   L EM+  G+ P  +T+       N ++ G C        +  L+ M  + I+ ++
Sbjct: 544 KAQEILKEMLGKGLQPTIVTF-------NVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 596

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            T++SL+  +C + ++  +  I  ++   G  PD  T+  ++      R M++A   L  
Sbjct: 597 TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAW-FLFQ 655

Query: 468 ELMNKCVEAEV 478
           E+  K     V
Sbjct: 656 EMKGKGFSVSV 666



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 209/434 (48%), Gaps = 14/434 (3%)

Query: 23  RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82
           R + +V  + V F          +  D   F +    LV     R A  + +++      
Sbjct: 148 RPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLV 207

Query: 83  ITED---IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
           ++ D   ++L+  R     ++   A+ VF +  E G      SY  V+  + +  ++K A
Sbjct: 208 LSVDSCNVYLT--RLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEA 265

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
                 M   G  P V S + ++   C+  G +D  +K+   M  +G  P+SY YG++I 
Sbjct: 266 HHLLLLMELKGYTPDVISYSTVVNGYCR-FGELDKVWKLIEVMKRKGLKPNSYIYGSIIG 324

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
            LCR+ K+ EA+E F EM  +   P  V YT+LI+G C+   +  A + F EM S+ + P
Sbjct: 325 LLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITP 384

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +V TY++++ G C+ G   +A +L   M  K   P+ VT++ L+NG CK G +++A  + 
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 444

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           + M   G  P+   Y  +I   C  G    A   L EM   G+ PN  T+       N++
Sbjct: 445 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTY-------NSI 497

Query: 380 VQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           V GLCK+ +   A ++        ++ D++TY++L+  +CK G++ K+  I+ E++  G 
Sbjct: 498 VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557

Query: 439 LPDEGTWSAVMTAL 452
            P   T++ +M   
Sbjct: 558 QPTIVTFNVLMNGF 571



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 198/396 (50%), Gaps = 32/396 (8%)

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K++G +P  + +     +LV+   L+ A R +  M   G+   V S NV +  L K+   
Sbjct: 169 KDWGSDP--RVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYK 226

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A  +FRE P  G   +  +Y  +I+ +C+LG+I EA  L   ME K  +P V++Y++
Sbjct: 227 TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYST 286

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           ++NG C+   +++  +L E M+ KG++PN + Y S++  LC+    ++A E    MI + 
Sbjct: 287 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG 346

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+ V Y+TL++G CK G ++ A +    M  + + PD   Y  IIS FC IG   EA 
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 406

Query: 352 NFLDEMVLGGITPNRLTWSLHI-------------RIHN---------------TVVQGL 383
               EM   G+ P+ +T++  I             R+HN               T++ GL
Sbjct: 407 KLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 466

Query: 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK  D + A ++   M    +  +  TY+S++   CK G+I ++ ++V E    G   D 
Sbjct: 467 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 526

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            T++ +M A     +M +A E +L E++ K ++  +
Sbjct: 527 VTYTTLMDAYCKSGEMDKAQE-ILKEMLGKGLQPTI 561



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 178/365 (48%), Gaps = 13/365 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G   D   ++ +I         R A      ++    DIT D+  + +I  G+ ++   +
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR--DITPDVLTYTAIISGFCQIGDMV 403

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A ++F +M   G EP   ++  ++    +   +K AFR + HM + G  P V +   LI
Sbjct: 404 EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLI 463

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +D+A ++  EM   G  P+ +TY +++NGLC+ G I EA +L  E E    
Sbjct: 464 DGLCK-EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +   VTYT+L++  C+S  +++A  + +EM  KG++P + T++ LM+G C  G      +
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 582

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M++K   PN  T+++L+   C    L+ A  I   M  +G+ PD   Y  ++   C
Sbjct: 583 LLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC 642

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
                +EA     EM   G       +S+ +  ++ +++G  K      A +V+  MR  
Sbjct: 643 KARNMKEAWFLFQEMKGKG-------FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695

Query: 402 SISVD 406
            ++ D
Sbjct: 696 GLAAD 700



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 152/318 (47%), Gaps = 1/318 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +IS          A  L   +  +  +     F  +  GY +     DA RV 
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 444

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M + GC P   +Y T++  L +E  L  A      M +IG+QP + + N ++  LCK 
Sbjct: 445 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK- 503

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG ++ A K+  E    G   D+ TY TL++  C+ G++ +A+E+ KEM  K   PT+VT
Sbjct: 504 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 563

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L+NG C    +E+  +L   M +KG+ PN  T++SL+   C       A  + + M 
Sbjct: 564 FNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 623

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+   P+  TY  L+ G CK   ++EA  +   MK +G       Y  +I  F    K+ 
Sbjct: 624 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 683

Query: 349 EAANFLDEMVLGGITPNR 366
           EA    D+M   G+  ++
Sbjct: 684 EAREVFDQMRREGLAADK 701



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 1/230 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ +++ L  +     A  L+        +     + ++   Y +      A
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +M   G +PT  ++  ++        L+   +    M   GI P   + N L+K 
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C  +  + AA  I+++M +RG  PD  TY  L+ G C+   + EA  LF+EM+ K  S 
Sbjct: 606 YCIRN-NLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSV 664

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           +V TY+ LI G  + K   EA  +F++MR +G+  +   +    D   KG
Sbjct: 665 SVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKG 714


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 192/358 (53%), Gaps = 18/358 (5%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           K+    C+P       ++  L++EN+       Y+ M    IQP V + NV+I ALCK +
Sbjct: 185 KLSALSCKP-------LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCK-T 236

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG---KIYEAKELFKEMETKACSPTV 226
           G M+ A  +  +M   GC+P+  +Y TLI+G C+LG   K+Y+A  + KEM     SP +
Sbjct: 237 GKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNL 296

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T+  LI+G  +  ++  +M++F+EM  + V+PNV +Y+SL++GLC GG  S+A+ +   
Sbjct: 297 TTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDK 356

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+S   +PN++TY+ L+NG CK   L+EA+++   +K QG  P   +Y  +I  +C +GK
Sbjct: 357 MVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGK 416

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVD 406
             +     +EM   GI P+       +  +N ++ GLC+     A +            D
Sbjct: 417 IDDGFALKEEMEREGIVPD-------VGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPD 469

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            +T+  L+  +C+KG+  K+A ++ E+   G  P   T++ VM        ++ A  +
Sbjct: 470 LVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNM 527



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 149/269 (55%), Gaps = 3/269 (1%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +M+VF +M +   +P   SY +++  L    ++  A      M   G+QP + + N LI 
Sbjct: 315 SMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALIN 374

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CKN   +  A  +F  +  +G  P +  Y  LI+  C+LGKI +   L +EME +   
Sbjct: 375 GFCKND-MLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V TY  LI GLC++ ++E A +LF+++ SKG+ P++ T+  LM+G C+ G S +A  L
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAML 492

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLYGKIISCFC 342
           L+ M     +P  +TY+ ++ G CKEG L+ A  +  +M K + L+ +   Y  ++  + 
Sbjct: 493 LKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYS 552

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSL 371
             GK ++A   L+EM+  G+ PNR+T+ +
Sbjct: 553 QKGKLEDANMLLNEMLEKGLVPNRITYEI 581



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 169/325 (52%), Gaps = 15/325 (4%)

Query: 154 CVASL--NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           CV S+  ++L+ A   NS   +  F+ F+     G    + +   L+  L +  +  + +
Sbjct: 150 CVNSIIADMLVLAYANNS-RFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVE 208

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
            ++KEM  +   P V T+  +IN LC++  + +A  + E+M+  G  PNV +Y++L+DG 
Sbjct: 209 YVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGY 268

Query: 272 CKGGCSS---QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           CK G +    +A  +L+ M+     PN+ T++ L++G  K+  L  ++++   M  Q +K
Sbjct: 269 CKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVK 328

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           P+   Y  +I+  C+ GK  EA +  D+MV  G+ PN +T+       N ++ G CK D 
Sbjct: 329 PNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITY-------NALINGFCKNDM 381

Query: 389 -NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
              A  ++ S++ +     +  Y+ LI  +CK G I     + +E+  +G +PD GT++ 
Sbjct: 382 LKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNC 441

Query: 448 VMTALWDRRKMRQAAELLLLELMNK 472
           ++  L  R    +AA+ L  +L +K
Sbjct: 442 LIAGLC-RNGNIEAAKKLFDQLTSK 465



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 145/289 (50%), Gaps = 11/289 (3%)

Query: 51  STFSLMISKLVSANQF----RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           +TF+++I      +      +  +++LD+  K        +   +C G G++    +A+ 
Sbjct: 297 TTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNG-GKIS---EAIS 352

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           + DKM   G +P   +Y  ++    + + LK A   +  ++  G  P     N+LI A C
Sbjct: 353 MRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYC 412

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G +D  F +  EM   G  PD  TY  LI GLCR G I  AK+LF ++ +K   P +
Sbjct: 413 K-LGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDL 470

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL-LQ 285
           VT+  L+ G C+     +A  L +EM   G++P   TY+ +M G CK G    A  +  Q
Sbjct: 471 VTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ 530

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           M   +R R N+ +Y+ LL G  ++GKL++A  +L+ M  +GL P+   Y
Sbjct: 531 MEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 232/470 (49%), Gaps = 47/470 (10%)

Query: 6   MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ 65
           M +    +++ Q+ +L++AEK    AL +FDSA+ +   G+ H    F L++ +L     
Sbjct: 1   MVELPKPLSARQLFKLLKAEKSPKSALALFDSASRQ--PGYTHSPHIFLLILRRLSDPKL 58

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYI 124
                 +++ +  +KC  TED+ L++ + Y +   P +A+  F KM+E FGC+P  +SY 
Sbjct: 59  VVHVTRIVELIKTQKCKCTEDVVLTVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYN 118

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN---------------- 168
            +L   +E N L+ A  F  +   +GI P + + N+LIK   K                 
Sbjct: 119 ALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSK 178

Query: 169 ------------------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
                             SG + +A ++F EM  RG  PD   Y  +I+G  + G   + 
Sbjct: 179 DLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQG 238

Query: 211 KELFKEMETKAC-SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           KE+++ +   +C  P VVTY  +INGLC+    +E++ ++E M+    E ++FTYSSL+ 
Sbjct: 239 KEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLIC 298

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC  G    A+E+ + M+ +    ++VTY+ LLNG C+ GK++E+ E+   M  +    
Sbjct: 299 GLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCH- 357

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
           +   Y   I    +  K +EA +  + +   G   +  T+ +       ++ GLCK    
Sbjct: 358 NVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGV-------LIHGLCKNGHL 410

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           N+A ++    ++    +D+  YSS++    K+G + ++  IV ++   GC
Sbjct: 411 NKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGC 460



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 197/405 (48%), Gaps = 10/405 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T+S +I  L        A ++   + K    +    + ++  G+ R  +  ++  ++
Sbjct: 289 DLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELW 348

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M +  C     SY   +  L E  +++ A   +  +R  G      +  VLI  LCKN
Sbjct: 349 VMMGKENCHNVV-SYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKN 407

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G ++ A KI +E  + G   D++ Y ++++GL + G++ EA  +  +M+   C  +   
Sbjct: 408 -GHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHV 466

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
              LING  ++  +EEA+  F EM +KG  P V +Y++L++GLCK    S A   ++ M+
Sbjct: 467 CNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEML 526

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K  +P+++TYS L++GLC+  K+  A+ +  ++ ++GL+PD  ++  ++   C  GK +
Sbjct: 527 EKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIE 586

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
           +A      M      PN +T       HNT++ GL K  +   A  ++  M       D 
Sbjct: 587 DALLLYSNMKQSNCLPNLVT-------HNTLMDGLYKARECEMASVIWACMFKNGFQPDI 639

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++Y+  +   C  G I     + D+ + +G LP   TW  ++ A+
Sbjct: 640 ISYNITLKGLCSCGRISDGIALFDDALKNGILPTSITWYILVRAV 684



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 213/455 (46%), Gaps = 48/455 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPL 102
           G   +  T++++I   V   QF  A+ LLD +  +  D+  D++   ++  G  +    +
Sbjct: 144 GILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSK--DLKPDVYSYGTVINGMVKSGDLV 201

Query: 103 DAMRVFDKMKEFGCEPTPKSY-ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            A+ VFD+M E G  P    Y I +       + ++    + R ++   + P V + NV+
Sbjct: 202 SALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVM 261

Query: 162 IKALCK----------------------------------NSGTMDAAFKIFREMPNRGC 187
           I  LCK                                  + G +D A ++++EM  R  
Sbjct: 262 INGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSV 321

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
             D  TY  L+NG CR GKI E+ EL+  M  + C   VV+Y   I GL +++ VEEA+ 
Sbjct: 322 VVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCH-NVVSYNIFIRGLFENRKVEEAIS 380

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           ++E +R +G   +  TY  L+ GLCK G  ++A+++L+       + +   YS++++GL 
Sbjct: 381 VWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLS 440

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K+G++ EA+ I+ +M   G +    +   +I+ F    K +EA  F  EM   G +P  +
Sbjct: 441 KQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVV 500

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           +       +NT++ GLCK +  + A+     M  +    D +TYS L+   C+   I  +
Sbjct: 501 S-------YNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMA 553

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             +  ++++ G  PD    + +M  L    K+  A
Sbjct: 554 LNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDA 588



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 144/285 (50%), Gaps = 4/285 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +NKAL I   A      G + D   +S ++  L    +   A  ++ +++K  C+++  +
Sbjct: 410 LNKALKILKEAKD---GGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHV 466

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
              +  G+ R  +  +A+  F +M+  GC PT  SY T++  L +  +   A+ F + M 
Sbjct: 467 CNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEML 526

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E   +P + + ++L+  LC+    +D A  ++R++  +G  PD   +  L++GLC  GKI
Sbjct: 527 EKDWKPDMITYSLLMDGLCQGK-KIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKI 585

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  L+  M+   C P +VT+ +L++GL +++  E A  ++  M   G +P++ +Y+  
Sbjct: 586 EDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNIT 645

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           + GLC  G  S  + L    +     P  +T+  L+  + K G L
Sbjct: 646 LKGLCSCGRISDGIALFDDALKNGILPTSITWYILVRAVLKLGPL 690



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 133/262 (50%), Gaps = 10/262 (3%)

Query: 209 EAKELFKEME-TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           EA + F++ME    C P + +Y +L+N   ++  +E+A        + G+ PN+ TY+ L
Sbjct: 96  EALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNIL 155

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +    K     +A  LL  M SK  +P++ +Y T++NG+ K G L  A+E+ D M  +GL
Sbjct: 156 IKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGL 215

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG-ITPNRLTWSLHIRIHNTVVQGLCKT 386
            PD   Y  +I  F   G Y +     + +V G  + PN +T       +N ++ GLCK 
Sbjct: 216 VPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVT-------YNVMINGLCKM 268

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              + + +++  M+     +D  TYSSLI   C  G++  +  +  E+V    + D  T+
Sbjct: 269 GRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTY 328

Query: 446 SAVMTALWDRRKMRQAAELLLL 467
           +A++       K++++ EL ++
Sbjct: 329 NALLNGFCRAGKIKESFELWVM 350



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 8/261 (3%)

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEM-RSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           P  ++   L   L   KS + A+ LF+   R  G   +   +  ++  L           
Sbjct: 5   PKPLSARQLFKLLKAEKSPKSALALFDSASRQPGYTHSPHIFLLILRRLSDPKLVVHVTR 64

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-LQGLKPDAGLYGKIISCF 341
           +++++ +++ +       T+L    K     EA++   +M+ + G KP    Y  +++ F
Sbjct: 65  IVELIKTQKCKCTEDVVLTVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAF 124

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
            +    ++A +FL      GI PN  T+++ I+I     Q +       A  +   M ++
Sbjct: 125 IEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFV------EAKGLLDWMWSK 178

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D  +Y ++I    K GD+  +  + DE+   G +PD   ++ ++   + R    Q 
Sbjct: 179 DLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQG 238

Query: 462 AELLLLELMNKCVEAEVDIQN 482
            E+    +   CV   V   N
Sbjct: 239 KEIWERLVKGSCVYPNVVTYN 259


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 222/423 (52%), Gaps = 21/423 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SIC-RGYGRVHRPLD 103
           D   ++ +I+     N+   A  +LDR+  +      +T +I + S+C RG       LD
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG------KLD 210

Query: 104 -AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A++V +++    C+PT  +Y  ++   + E  +  A +    M   G++P + + N +I
Sbjct: 211 LALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTII 270

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           + +CK  G +D AF++ R +  +GC PD  +Y  L+  L   GK  E ++L  +M ++ C
Sbjct: 271 RGMCK-EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY+ LI  LC+   +EEAM L + M+ KG+ P+ ++Y  L+   C+ G    A+E
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L+ MIS    P+IV Y+T+L  LCK GK  +A+EI  ++   G  P++  Y  + S   
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G    A + + EM+  GI P+ +T+       N+++  LC+    + AF++ + MR+ 
Sbjct: 450 SSGDKIRALHMILEMMSNGIDPDEITY-------NSMISCLCREGMVDEAFELLVDMRSC 502

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
                 +TY+ ++  FCK   I  +  +++ +V +GC P+E T++ ++  +       +A
Sbjct: 503 EFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEA 562

Query: 462 AEL 464
            EL
Sbjct: 563 MEL 565



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 198/396 (50%), Gaps = 11/396 (2%)

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+F   ++  G+ +++R  DA RV D+M+     P   +Y  ++  L    +L LA +  
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVL 216

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             +     QP V +  +LI+A     G +D A K+  EM +RG  PD +TY T+I G+C+
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGG-VDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G +  A E+ + +E K C P V++Y  L+  L      EE  +L  +M S+  +PNV T
Sbjct: 276 EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           YS L+  LC+ G   +AM LL++M  K   P+  +Y  L+   C+EG+L  A+E L+ M 
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G  PD   Y  +++  C  GK  +A     ++   G +PN  ++       NT+   L
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSY-------NTMFSAL 448

Query: 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
             + D  RA  + L M +  I  D +TY+S+I+C C++G + ++  ++ ++      P  
Sbjct: 449 WSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSV 508

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            T++ V+       ++  A  +L   + N C   E 
Sbjct: 509 VTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNET 544



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 202/377 (53%), Gaps = 10/377 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + +G+  +     A+RV + +++FG +P   +Y  ++    + N++  A R    MR   
Sbjct: 130 LIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD 188

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
             P   + N++I +LC + G +D A K+  ++ +  C P   TY  LI      G + EA
Sbjct: 189 FSPDTVTYNIMIGSLC-SRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEA 247

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            +L  EM ++   P + TY ++I G+C+   V+ A  +   +  KG EP+V +Y+ L+  
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRA 307

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           L   G   +  +L+  M S++  PN+VTYS L+  LC++GK++EA+ +L  MK +GL PD
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 367

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
           A  Y  +I+ FC  G+   A  FL+ M+  G  P+ + +       NTV+  LCK    +
Sbjct: 368 AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY-------NTVLATLCKNGKAD 420

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A +++  +     S +S +Y+++ +     GD  ++  ++ E++ +G  PDE T+++++
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMI 480

Query: 450 TALWDRRKMRQAAELLL 466
           + L     + +A ELL+
Sbjct: 481 SCLCREGMVDEAFELLV 497



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 172/351 (49%), Gaps = 10/351 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T IT   +++    E  V++AL + D   +    G + D  T++ +I  +        A 
Sbjct: 227 TVITYTILIEATMLEGGVDEALKLMDEMLSR---GLKPDMFTYNTIIRGMCKEGMVDRAF 283

Query: 71  DLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           +++  +  + C+   I+ +I L      G+     +  ++  KM    C+P   +Y  ++
Sbjct: 284 EMVRNLELKGCEPDVISYNILLRALLNQGKWE---EGEKLMTKMFSEKCDPNVVTYSILI 340

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
             L  + +++ A    + M+E G+ P   S + LI A C+  G +D A +    M + GC
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR-EGRLDVAIEFLETMISDGC 399

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            PD   Y T++  LC+ GK  +A E+F ++    CSP   +Y ++ + L  S     A+ 
Sbjct: 400 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 459

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +  EM S G++P+  TY+S++  LC+ G   +A ELL  M S    P++VTY+ +L G C
Sbjct: 460 MILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFC 519

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           K  ++++A+ +L+ M   G +P+   Y  +I      G   EA    +++V
Sbjct: 520 KAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 152/326 (46%), Gaps = 30/326 (9%)

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG    +  +   M  +G  PD      LI G   L  I +A  + + +E K   P V  
Sbjct: 102 SGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILE-KFGQPDVFA 160

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LING C+   +++A R+ + MRSK   P+  TY+ ++  LC  G    A+++L  ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S   +P ++TY+ L+     EG + EA++++D M  +GLKPD   Y  II   C  G   
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVV 380
            A   +  + L G  P+ +++++ +R                             ++ ++
Sbjct: 281 RAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LC+      A  +   M+ + ++ D+ +Y  LI  FC++G +  +   ++ ++ DGCL
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCL 400

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           PD   ++ V+  L    K  QA E+ 
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIF 426



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+S +  E++ L E M  KG  P+V   + L+ G        +A+ +++++  K  +P++
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEIL-EKFGQPDV 158

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
             Y+ L+NG CK  ++ +A  +LDRM+ +   PD   Y  +I   C  GK   A   L++
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
           ++     P  +T++  I I  T+++G      + A ++   M +R +  D  TY+++I  
Sbjct: 219 LLSDNCQPTVITYT--ILIEATMLEG----GVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            CK+G + ++  +V  L L GC PD  +++ ++ AL ++ K  +  +L+      KC
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 234/477 (49%), Gaps = 50/477 (10%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  V+KA  +F         G   D  T++ +I  L  A +   AED+  ++ ++     
Sbjct: 206 EGQVDKAYSLF------LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPN 259

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + +I  G  +      A  VF KM + G +P+  +Y T++  L +   +  A   ++
Sbjct: 260 NVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQ 319

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M + G++P   + N +I  LCK +  +D A  +F++M ++G  PD+ TY  +I+GLC+ 
Sbjct: 320 QMIDRGVKPDHVTYNTIIDGLCK-AQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKA 378

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
             +  A+ +F++M  K   P   TY  LI+G   +   EE ++  +EM +  +EP+VFTY
Sbjct: 379 QSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTY 438

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD---- 320
             L+D LCK G  ++A  L   MI K  +P++  Y  +L+G  K+G L E  ++L+    
Sbjct: 439 GLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVA 498

Query: 321 -------------------------------RMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
                                          +MK QGL P+   YG +I   C +G+  +
Sbjct: 499 NGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDD 558

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A    ++M+  G+TPN + +       N++V GLC  D   +  +++L M N+ I  D +
Sbjct: 559 AVLQFNQMINEGVTPNNVVF-------NSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIV 611

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +++++   CK+G + ++ R++D +V  G  PD  +++ ++       +M +A +LL
Sbjct: 612 FFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLL 668



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 205/395 (51%), Gaps = 31/395 (7%)

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           E G  P   +Y T++  L +  ++  A   ++ M E G++P   + N +I  LCK +  +
Sbjct: 218 EMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCK-AQEV 276

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +F++M ++G  P + TY T+I+GLC+   +  A+ +F++M  +   P  VTY ++
Sbjct: 277 DMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTI 336

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+GLC+++++++A  +F++M  KGV+P+  TY+ ++DGLCK     +A  + Q MI K  
Sbjct: 337 IDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGV 396

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +PN  TY+ L++G    G+ +E V+ +  M    L+PD   YG ++   C  GK  EA +
Sbjct: 397 KPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARS 456

Query: 353 FLDEMVLGGITPNRLTWSLHI----------------------------RIHNTVVQGLC 384
             D M+  GI P+   + + +                            RI NTV+    
Sbjct: 457 LFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYA 516

Query: 385 KTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K    +    +++ M+ + +S + +TY +LI   CK G +  +    ++++ +G  P+  
Sbjct: 517 KRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNV 576

Query: 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            +++++  L    K  +  E L LE++N+ +  ++
Sbjct: 577 VFNSLVYGLCTVDKWEKVEE-LFLEMLNQGIRPDI 610



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 178/346 (51%), Gaps = 19/346 (5%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   +Y  V+       +L+L F  +  + + G +     +N L+K LC      +A   
Sbjct: 82  PDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHV 141

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM---ETKACSPTVVTYTSLIN 234
           + R+MP  GC     +Y TL+ GLC   +  EA+EL   M   +  +CSP VV+Y  +IN
Sbjct: 142 LLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVIN 201

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G      V++A  LF EM   GV P+V TY++++DGLCK     +A ++ Q M+ K  +P
Sbjct: 202 GFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKP 258

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N VTY+T+++GLCK  ++  A  +  +M  +G+KP    Y  II   C       A    
Sbjct: 259 NNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVF 318

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
            +M+  G+ P+ +T+       NT++ GLCK    ++A  V+  M ++ +  D+LTY+ +
Sbjct: 319 QQMIDRGVKPDHVTY-------NTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTII 371

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM-----TALWD 454
           I   CK   + ++  +  +++  G  P+ GT++ ++     T  W+
Sbjct: 372 IDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWE 417



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 211/430 (49%), Gaps = 25/430 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC-DITEDIFLSICRGYGRVHRPL- 102
           G + +N T++ +I   +S  Q+   E+++ R+ +    D+  D+F      YG +   L 
Sbjct: 395 GVKPNNGTYNCLIHGYLSTGQW---EEVVQRIKEMSAHDLEPDVFT-----YGLLLDYLC 446

Query: 103 ------DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
                 +A  +FD M   G +P+   Y  +L    ++  L         M   GI P   
Sbjct: 447 KNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHR 506

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
             N +I A  K +  +D    IF +M  +G +P+  TYGTLI+ LC+LG++ +A   F +
Sbjct: 507 IFNTVICAYAKRA-MIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQ 565

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +  +P  V + SL+ GLC     E+   LF EM ++G+ P++  +++++  LCK G 
Sbjct: 566 MINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGR 625

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A  L+  M+    +P++++Y+TL++G C   ++ EAV++LD M   GLKP+   Y  
Sbjct: 626 VMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNT 685

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           ++  +C  G+   A     EM+  G+TP        +  +NT++ GL ++   + A ++Y
Sbjct: 686 LLHGYCKAGRIDNAYCLFREMLRKGVTPG-------VETYNTILNGLFRSGRFSEARELY 738

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           ++M          TYS ++  FCK     ++ +I   L       D  T++ ++  L+  
Sbjct: 739 VNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKG 798

Query: 456 RKMRQAAELL 465
            +   A +L 
Sbjct: 799 GRKEDAMDLF 808



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 178/334 (53%), Gaps = 12/334 (3%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL-LDRVNKE-KCDIT- 84
           V+ A++ F+    E   G   +N  F+ ++  L + +++   E+L L+ +N+  + DI  
Sbjct: 556 VDDAVLQFNQMINE---GVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVF 612

Query: 85  -EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
              +  ++C+  GRV   ++A R+ D M   G +P   SY T++      +++  A +  
Sbjct: 613 FNTVLCNLCK-EGRV---MEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLL 668

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M   G++P + S N L+   CK +G +D A+ +FREM  +G TP   TY T++NGL R
Sbjct: 669 DGMVSAGLKPNIVSYNTLLHGYCK-AGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFR 727

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G+  EA+EL+  M       ++ TY+ +++G C++   +EA ++F+ + S  ++ ++ T
Sbjct: 728 SGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIIT 787

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           ++ ++DGL KGG    AM+L   + +    P++VTY  +   L +EG L+E   +   M+
Sbjct: 788 FNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVME 847

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
             G  P++ +   +I    D G+   A  +L ++
Sbjct: 848 KSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKL 881



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 175/376 (46%), Gaps = 7/376 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T+  +I  L    +   A    +++  E       +F S+  G   V +    
Sbjct: 535 GLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKV 594

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F +M   G  P    + TVL  L +E ++  A R    M  +G++P V S N LI  
Sbjct: 595 EELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDG 654

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C  S  MD A K+   M + G  P+  +Y TL++G C+ G+I  A  LF+EM  K  +P
Sbjct: 655 HCFAS-RMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTP 713

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY +++NGL +S    EA  L+  M       ++ TYS ++DG CK  C  +A ++ 
Sbjct: 714 GVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIF 773

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           Q + S   + +I+T++ +++GL K G+ ++A+++   +   GL P    Y  I     + 
Sbjct: 774 QSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEE 833

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
           G  +E       M   G  PN    +  IR      + L + +  RA      +  ++ S
Sbjct: 834 GSLEELDCLFSVMEKSGTAPNSHMLNALIR------KLLDRGEIPRAGAYLSKLDEKNFS 887

Query: 405 VDSLTYSSLITCFCKK 420
           +++ T S LI+ F ++
Sbjct: 888 LEASTTSMLISLFSRE 903



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 1/271 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  +++ +I     A++   A  LLD +           + ++  GY +  R  +A
Sbjct: 640 GLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNA 699

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F +M   G  P  ++Y T+L  L    +   A   Y +M +      + + ++++  
Sbjct: 700 YCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDG 759

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CKN+   D AFKIF+ + +     D  T+  +I+GL + G+  +A +LF  +      P
Sbjct: 760 FCKNN-CFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVP 818

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           +VVTY  +   L +  S+EE   LF  M   G  PN    ++L+  L   G   +A   L
Sbjct: 819 SVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYL 878

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
             +  K       T S L++   +E   Q A
Sbjct: 879 SKLDEKNFSLEASTTSMLISLFSREEYQQHA 909



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 140/307 (45%), Gaps = 37/307 (12%)

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSK---SVEEAMRLFEEMR---SKGVEPN 260
           +++A +LF E+   A   +V     L++ + ++K   S + A+  F  M    S  V P+
Sbjct: 24  LHDALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPD 83

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TYS ++   C+ G          +++    R + +  + LL GLC   ++ EA+ +L 
Sbjct: 84  CCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLL 143

Query: 321 R-MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG---GITPNRLTWSLHIR-- 374
           R M   G +     Y  ++   CD  + +EA   L  MV G     +P+ +++++ I   
Sbjct: 144 RQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGF 203

Query: 375 -----------------------IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
                                   +NT++ GLCK  + +RA  V+  M  + +  +++TY
Sbjct: 204 FNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTY 263

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +++I   CK  ++  +  +  ++V  G  P   T++ ++  L   + + + AE +  +++
Sbjct: 264 NTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDR-AEGVFQQMI 322

Query: 471 NKCVEAE 477
           ++ V+ +
Sbjct: 323 DRGVKPD 329


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 191/365 (52%), Gaps = 19/365 (5%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMR---EIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           SY TVL  L        A    R M        +P   S  VL++ALC +    D A  +
Sbjct: 79  SYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADR-LADQAVGL 137

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
            R M + G   D  TYGTLI GLC   ++ +A EL  EM      P VV Y+SL+ G C+
Sbjct: 138 LRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCK 197

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           S   E+  ++F EM  KG+EP+V  Y+ L+D LCK G + +A  ++ MM+ +   PN+VT
Sbjct: 198 SGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVT 257

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y+ L+N +CKEG ++EA+ +L +M  +G+ PD   Y  +I    D+ +  EA   L+EMV
Sbjct: 258 YNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMV 317

Query: 359 LGG--ITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLIT 415
            G   + PN +T+       N+V+QGLC     R AFQV   M      V+ +TY+ LI 
Sbjct: 318 RGKNIVKPNVVTF-------NSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIG 370

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA--AELLLLELMNKC 473
              +   + K+  ++DE+   G  PD  T+S ++       KM Q   AE LL  + ++ 
Sbjct: 371 GLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFC---KMWQVDRAEDLLSTMRDRG 427

Query: 474 VEAEV 478
           +E E+
Sbjct: 428 IEPEL 432



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 211/424 (49%), Gaps = 12/424 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  T+  +I  L  A +   A +L+  + +   +    ++ S+ +GY +  R  D 
Sbjct: 145 GVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDV 204

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            +VF +M E G EP    Y  ++  L +  + K A      M   G++P V + NVLI  
Sbjct: 205 GKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINC 264

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKAC 222
           +CK  G++  A  + ++M  +G  PD  TY TLI GL  + ++ EA  L +EM       
Sbjct: 265 MCKE-GSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIV 323

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVT+ S+I GLC    + +A ++   M   G   N+ TY+ L+ GL +     +AME
Sbjct: 324 KPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAME 383

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L+  M S    P+  TYS L+ G CK  ++  A ++L  M+ +G++P+   Y  ++   C
Sbjct: 384 LMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMC 443

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
           + G  + A N  +EM           + L +  ++T++ G CK  D   A ++  S+ + 
Sbjct: 444 EQGMMERARNLFNEM--------DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDE 495

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            ++ D++TYS +I  F K GD+  +  ++ ++   G LPD   + +++     + ++ + 
Sbjct: 496 GLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKV 555

Query: 462 AELL 465
            EL+
Sbjct: 556 LELI 559



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 194/399 (48%), Gaps = 45/399 (11%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +   M+  G      +Y T++  L +  ++  A      M E GI+P V   + L++
Sbjct: 134 AVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 193

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK SG  +   K+F EM  +G  PD   Y  LI+ LC++GK  +A  +   M  +   
Sbjct: 194 GYCK-SGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLE 252

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY  LIN +C+  SV+EA+ + ++M  KGV P+V TY++L+ GL       +AM L
Sbjct: 253 PNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWL 312

Query: 284 LQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           L+ M+  ++  +PN+VT+++++ GLC  G++++A ++   M+  G   +   Y  +I   
Sbjct: 313 LEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGL 372

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
             + K ++A   +DEM   G+ P+  T+S+       +++G CK    +RA  +  +MR+
Sbjct: 373 LRVHKVRKAMELMDEMTSLGLEPDSFTYSI-------LIKGFCKMWQVDRAEDLLSTMRD 425

Query: 401 RSIS----------------------------------VDSLTYSSLITCFCKKGDIHKS 426
           R I                                   +D + YS++I   CK GD+  +
Sbjct: 426 RGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTA 485

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             ++  +V +G  PD  T+S V+        M  A  +L
Sbjct: 486 KELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVL 524



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 148/278 (53%), Gaps = 13/278 (4%)

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK---ACSPTVVTYTSLINGLCQSKSVEEAM 246
           D+ +Y T++  LCR G    A  L + M  +   AC P  V+YT L+  LC  +  ++A+
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            L   MRS GV  +V TY +L+ GLC      +A+EL+  M      PN+V YS+LL G 
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CK G+ ++  ++   M  +G++PD  +Y  +I   C +GK ++A   +D MV  G+ PN 
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNV 255

Query: 367 LTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           +T+       N ++  +CK      A  V   M  + ++ D +TY++LI       ++ +
Sbjct: 256 VTY-------NVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDE 308

Query: 426 SARIVDELVLDGCL--PDEGTWSAVMTALWDRRKMRQA 461
           +  +++E+V    +  P+  T+++V+  L D  +MRQA
Sbjct: 309 AMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQA 346



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 108/234 (46%), Gaps = 5/234 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++L+I  L+  ++ R A +L+D +     +     +  + +G+ ++ +   A  +   M
Sbjct: 364 TYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTM 423

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           ++ G EP    YI +L  + E+  ++ A   +  M +      V + + +I   CK +G 
Sbjct: 424 RDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACK-AGD 481

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A ++ + + + G TPD+ TY  +IN   + G +  A  + K+M      P V  + S
Sbjct: 482 LKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDS 541

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           LI G      + + + L  EM +K +  +    S+L   L     S++   LLQ
Sbjct: 542 LIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLV---ASNEGKALLQ 592



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 49/226 (21%)

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK--------------------------- 311
           +A  LL  + S R   + V+Y+T+L  LC+ G                            
Sbjct: 63  EATSLLDALPSVR---DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYT 119

Query: 312 -----------LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
                        +AV +L  M+  G++ D   YG +I   CD  +  +A   + EM   
Sbjct: 120 VLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCES 179

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           GI PN       + ++++++QG CK+       +V++ M  + I  D + Y+ LI   CK
Sbjct: 180 GIEPN-------VVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G   K+  ++D +V  G  P+  T++ ++  +     +++A  +L
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVL 278



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 19/244 (7%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL----DRV 76
           L+R  K V KA+ + D  T+    G   D+ T+S++I       Q   AEDLL    DR 
Sbjct: 372 LLRVHK-VRKAMELMDEMTSL---GLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRG 427

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQ 135
            + +      + +++C   G + R   A  +F++M   F  +    +Y T++    +   
Sbjct: 428 IEPELFHYIPLLVAMCE-QGMMER---ARNLFNEMDNNFPLDVV--AYSTMIHGACKAGD 481

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           LK A    + + + G+ P   + +++I    K SG M+AA  + ++M   G  PD   + 
Sbjct: 482 LKTAKELLKSIVDEGLTPDAVTYSIVINMFAK-SGDMEAANGVLKQMTASGFLPDVAVFD 540

Query: 196 TLINGLCRLGKIYEAKELFKEMETKAC---SPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +LI G    G+I +  EL +EM TK     S  + T ++ +    + K++ +++  F   
Sbjct: 541 SLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNEGKALLQSLPDFSAE 600

Query: 253 RSKG 256
            SKG
Sbjct: 601 ISKG 604


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 199/354 (56%), Gaps = 9/354 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+++  +M+    +P   +Y  ++  L ++ +++ A + Y+ M    I P   + + ++
Sbjct: 344 EALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGIL 403

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K LC+  G +  A   F  +      PD   Y  +I+G  +LG + EA  L+K +  KA 
Sbjct: 404 KGLCE-KGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAI 462

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P++VT+ SLI G C+++ V EA RL E ++  G+EP+  TY++LM+  C+ G  ++  E
Sbjct: 463 TPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHE 522

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M  K   P +VTY+ ++ GLCK+ KL+E+V++L+ M+ +GL PD   Y  II CFC
Sbjct: 523 LLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFC 582

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
                ++A   LD+M++  + P   T+       N ++ GLC+  D   A +V +S+++R
Sbjct: 583 KAKDMRKAFELLDDMLIHNLEPTPATY-------NVLIDGLCRYGDVEDADRVLVSLQDR 635

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           +I++  + Y+++I   C KGD  ++ ++  ++V  G       +SAV+  L  R
Sbjct: 636 NINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKR 689



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 211/410 (51%), Gaps = 10/410 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  +++++I  L+ A     A +L + + K+        +  + +G+  +     A
Sbjct: 215 GILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGA 274

Query: 105 MRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
             +  KM  + G +P   +Y  ++    +   ++ A R  R +   G Q  V   +VL+ 
Sbjct: 275 REIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLS 334

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK  G +D A ++  EM      PD  TY  LI+GLC+ GK+ +A +L+KEM      
Sbjct: 335 SLCKR-GQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIF 393

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    ++ ++ GLC+   + +A   F+ +    + P+V  Y+ ++DG  K G   +A+ L
Sbjct: 394 PNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRL 453

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + +  K   P+IVT+++L+ G CK  K+ EA  +L+ +KL GL+P A  Y  +++ +C+
Sbjct: 454 YKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCE 513

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
            G   +    L EM L  I P  +T+++       V++GLCK      + Q+   MR + 
Sbjct: 514 EGNINKLHELLLEMNLKDIEPTVVTYTV-------VIKGLCKQRKLEESVQLLEDMRAKG 566

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++ D +TY+++I CFCK  D+ K+  ++D++++    P   T++ ++  L
Sbjct: 567 LAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGL 616



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 205/369 (55%), Gaps = 13/369 (3%)

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           KEF   P+  S+ T+++   +     +A  F+  M + GI P   S N+LI  L   +G+
Sbjct: 179 KEFA--PSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIV-AGS 235

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET-KACSPTVVTYT 230
           M+ A ++  +M  +G  PD  TY  +  G   LG +  A+E+ ++M T +   P +VTYT
Sbjct: 236 MEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYT 295

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LI G CQ  ++EEA+RL  ++ S G + NV  YS L+  LCK G   +A++LL  M + 
Sbjct: 296 VLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEAN 355

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +P++VTYS L++GLCK+GK+Q+A+++   M    + P++  +  I+   C+ G   +A
Sbjct: 356 NLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDA 415

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
             + D +++  + P+       + ++N ++ G  K  D   A ++Y  +R+++I+   +T
Sbjct: 416 RMYFDSLIMSNLRPD-------VTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVT 468

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           ++SLI  FCK   + ++ R+++ + L G  P   T++ +M A  +   + +  E LLLE+
Sbjct: 469 FNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHE-LLLEM 527

Query: 470 MNKCVEAEV 478
             K +E  V
Sbjct: 528 NLKDIEPTV 536



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 219/469 (46%), Gaps = 52/469 (11%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           I DS T + A        T S+++  L   ++FR A   L + + ++   +   F +I  
Sbjct: 141 IKDSGTPQSAR-------TSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMS 193

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y ++     A   F  M ++G  P   SY  ++  L+    ++ A      M + G+QP
Sbjct: 194 RYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQP 253

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
            + +  ++ K      G M  A +I ++M  + G  PD  TY  LI G C++G I EA  
Sbjct: 254 DMVTYKIVAKGF-HLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALR 312

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           L +++ +      V+ Y+ L++ LC+   V+EA++L  EM +  ++P++ TYS L+ GLC
Sbjct: 313 LRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLC 372

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G   QA++L + M   R  PN   +S +L GLC++G L +A    D + +  L+PD  
Sbjct: 373 KQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVT 432

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT------ 386
           LY  +I  +  +G  +EA      +    ITP+ +T+       N+++ G CK       
Sbjct: 433 LYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTF-------NSLIYGFCKNRKVVEA 485

Query: 387 ------------------------------DPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
                                         + N+  ++ L M  + I    +TY+ +I  
Sbjct: 486 RRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKG 545

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            CK+  + +S ++++++   G  PD+ T++ ++      + MR+A ELL
Sbjct: 546 LCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELL 594



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 44/368 (11%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DITEDIFL--SICRGYGRV 98
           AN  + D  T+S++I  L    + + A  L     KE C   I  + F    I +G    
Sbjct: 354 ANNLQPDLVTYSILIHGLCKQGKVQQAIQLY----KEMCFNRIFPNSFAHSGILKGLCEK 409

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
               DA   FD +      P    Y  ++   V+   ++ A R Y+ +R+  I P + + 
Sbjct: 410 GMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTF 469

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N LI   CKN   ++A  ++   +   G  P + TY TL+N  C  G I +  EL  EM 
Sbjct: 470 NSLIYGFCKNRKVVEAR-RLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMN 528

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS------------ 266
            K   PTVVTYT +I GLC+ + +EE+++L E+MR+KG+ P+  TY++            
Sbjct: 529 LKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMR 588

Query: 267 -----------------------LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
                                  L+DGLC+ G    A  +L  +  +      V Y+T++
Sbjct: 589 KAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMI 648

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
              C +G  Q AV++  +M  +G +     Y  +I+  C      EA  +   M+  G++
Sbjct: 649 KAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVS 708

Query: 364 PNRLTWSL 371
           P++  + +
Sbjct: 709 PDQEIFEM 716



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 155/335 (46%), Gaps = 4/335 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           ++ A + FDS      +  R D + +++MI   V       A  L  R+  +    +   
Sbjct: 412 LSDARMYFDSLIM---SNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVT 468

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F S+  G+ +  + ++A R+ + +K  G EP+  +Y T++    EE  +         M 
Sbjct: 469 FNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMN 528

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              I+P V +  V+IK LCK    ++ + ++  +M  +G  PD  TY T+I   C+   +
Sbjct: 529 LKDIEPTVVTYTVVIKGLCKQR-KLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDM 587

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A EL  +M      PT  TY  LI+GLC+   VE+A R+   ++ + +      Y+++
Sbjct: 588 RKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTM 647

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +   C  G + +A+++   M+ K    +I  YS ++N LCK   + EA      M   G+
Sbjct: 648 IKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGV 707

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
            PD  ++  +++ F   G        L  M+  G+
Sbjct: 708 SPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGL 742



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 126/295 (42%), Gaps = 76/295 (25%)

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLM------------------------------ 268
           S+ V +A+ +  +M+ + + P++ TY+SL+                              
Sbjct: 96  SRMVHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHTDIMWDVYNDIKDSGTPQSARTSSI 155

Query: 269 --DGLC-----------------------------------KGGCSSQAMELLQMMISKR 291
             DGLC                                   K G +  A     MM+   
Sbjct: 156 IVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYG 215

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+  +Y+ L++GL   G ++EA+E+ + M+ QGL+PD   Y  +   F  +G    A 
Sbjct: 216 ILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAR 275

Query: 352 NFLDEMVLG-GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
             + +M+   G+ P+ +T+++       ++ G C+  +   A ++   + +    ++ + 
Sbjct: 276 EIIQKMLTDEGLKPDLVTYTV-------LICGHCQMGNIEEALRLRRDLLSSGFQLNVIL 328

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           YS L++  CK+G + ++ +++ E+  +   PD  T+S ++  L  + K++QA +L
Sbjct: 329 YSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQL 383


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 228/436 (52%), Gaps = 16/436 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +GF  +  T++ ++S L +  +   A+ L +R+ K         + ++  G+ +V    +
Sbjct: 4   HGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDE 63

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+++FD   + G  P   +Y  ++    + ++L  A R  + M    + P V + N L+ 
Sbjct: 64  ALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVN 123

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR-LGKIYEAKELFKEMETKAC 222
            LCKN G +D A  +   + ++G +P+  TY TLI+GLCR L  + EA +LF  +  +  
Sbjct: 124 GLCKN-GRVDEARML---IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGY 179

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TY  LI+GL +   V EA  LF  +   G+EP+  TY+  +DGLCK G    A+ 
Sbjct: 180 EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALL 239

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +L+ M  K   P++V+++ ++NGLCKE ++ EA  +L  M+ +G  P+A  +  +I   C
Sbjct: 240 MLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQC 299

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP----NRAFQVYLSM 398
             GK+++A     EM+  G+ P  +T+       N +V GLCK         A  ++ +M
Sbjct: 300 RAGKWKKAMTTFKEMLKRGVKPTVVTY-------NILVDGLCKARQEGRIKEAITLFDAM 352

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             +    D +TYS+LI    K G +  + R++  +   GC+P+  T++++++ L    K+
Sbjct: 353 IEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKV 412

Query: 459 RQAAELLLLELMNKCV 474
            +A EL +  +   CV
Sbjct: 413 DEALELFVAMVEKGCV 428



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 177/359 (49%), Gaps = 48/359 (13%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           MR+ G  P   + N L+  LC N G M  A  ++  M   G +PD  TY TL++G C++G
Sbjct: 1   MRKHGFWPNRITYNALLSGLC-NGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVG 59

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ EA ++F     +   P VVTY +LING C++  ++EA R+ + M S+ + P+V TY+
Sbjct: 60  ELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYN 119

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC------------------ 307
           SL++GLCK G   +A  L+   + K   PN++TYSTL++GLC                  
Sbjct: 120 SLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLK 176

Query: 308 ------------------KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
                             KE ++ EA E+   +   GL+PDA  Y   I   C  G+ ++
Sbjct: 177 QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVED 236

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSL 408
           A   L +M   G  P+ ++       HN V+ GLCK       +V LS M  +  S +++
Sbjct: 237 ALLMLKDMDEKGCVPDVVS-------HNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAI 289

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           ++++LI   C+ G   K+     E++  G  P   T++ ++  L   R+  +  E + L
Sbjct: 290 SFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITL 348


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 230/463 (49%), Gaps = 14/463 (3%)

Query: 6   MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ 65
           M  +   ++   VL+L+++EK+   A  +FDSAT     G+ H    +  ++ +L     
Sbjct: 1   MVVFPKSLSPKHVLKLLKSEKNPRAAFALFDSATRH--PGYAHSAVVYHHILRRLSETRM 58

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYI 124
                 +++ +  ++C   ED+ LS+ + YG+   P  A+ VF +M+E FGCEP  +SY 
Sbjct: 59  VNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYN 118

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
           T+L   VE  Q       + +    G+ P + + NVLIK  CK     + A      M  
Sbjct: 119 TLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKK-EFEKARGFLDWMWK 177

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
            G  PD ++Y T+IN L + GK+ +A ELF EM  +  +P V  Y  LI+G  + K  + 
Sbjct: 178 EGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKT 237

Query: 245 AMRLFEE-MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           AM L++  +    V PNV T++ ++ GL K G     +++ + M       ++ TYS+L+
Sbjct: 238 AMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLI 297

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +GLC  G + +A  + + +  +    D   Y  ++  FC  GK +E+      + L  I 
Sbjct: 298 HGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKES------LELWRIM 351

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
            ++   S++I  +N +++GL +    + A  ++  M  +  + D  TY   I   C  G 
Sbjct: 352 EHKN--SVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGY 409

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++K+  ++ E+   G   D   +++++  L  ++++ +A+ L+
Sbjct: 410 VNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLV 452



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 209/435 (48%), Gaps = 16/435 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLDAMRVFD 109
           T++++I       +F  A   LD + KE      D+F   ++     +  +  DA+ +FD
Sbjct: 151 TYNVLIKMSCKKKEFEKARGFLDWMWKE--GFKPDVFSYSTVINDLAKAGKLDDALELFD 208

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLIKALCKN 168
           +M E G  P    Y  ++   ++E   K A   + R + +  + P V + N++I  L K 
Sbjct: 209 EMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSK- 267

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D   KI+  M       D YTY +LI+GLC  G + +A+ +F E++ +  S  VVT
Sbjct: 268 CGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVT 327

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +++ G C+   ++E++ L+  M  K    N+ +Y+ L+ GL + G   +A  + ++M 
Sbjct: 328 YNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEATMIWRLMP 386

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +K +  +  TY   ++GLC  G + +A+ ++  ++  G   D   Y  II C C   + +
Sbjct: 387 AKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLE 446

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDS 407
           EA+N + EM   G+  N         + N ++ GL +         +L  M         
Sbjct: 447 EASNLVKEMSKHGVELNS-------HVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTV 499

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           ++Y+ LI   CK G   +++  V E++ +G  PD  T+S ++  L   RK+  A E L  
Sbjct: 500 VSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALE-LWH 558

Query: 468 ELMNKCVEAEVDIQN 482
           + +   +E +V + N
Sbjct: 559 QFLQSGLETDVMMHN 573



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 207/445 (46%), Gaps = 18/445 (4%)

Query: 25  EKDVNKALVIFD---SATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81
           EKD   A+ ++D     ++ Y N   H+     +MIS L    +      + +R+ + + 
Sbjct: 232 EKDHKTAMELWDRLLEDSSVYPNVKTHN-----IMISGLSKCGRVDDCLKIWERMKQNER 286

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
           +     + S+  G         A  VF+++ E        +Y T+L       ++K +  
Sbjct: 287 EKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLE 346

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            +R M E      + S N+LIK L +N G +D A  I+R MP +G   D  TYG  I+GL
Sbjct: 347 LWRIM-EHKNSVNIVSYNILIKGLLEN-GKIDEATMIWRLMPAKGYAADKTTYGIFIHGL 404

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C  G + +A  + +E+E+      V  Y S+I+ LC+ K +EEA  L +EM   GVE N 
Sbjct: 405 CVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNS 464

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
              ++L+ GL +     +A   L+ M     RP +V+Y+ L+ GLCK GK  EA   +  
Sbjct: 465 HVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKE 524

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M   G KPD   Y  ++   C   K   A     + +  G+  +       + +HN ++ 
Sbjct: 525 MLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETD-------VMMHNILIH 577

Query: 382 GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLC     + A  V  +M +R+ + + +TY++L+  F K GD +++  I   +   G  P
Sbjct: 578 GLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQP 637

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
           D  +++ +M  L   R +  A E  
Sbjct: 638 DIISYNTIMKGLCMCRGVSYAMEFF 662



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 132/271 (48%), Gaps = 1/271 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V  +++  G      +Y +++  L ++ +L+ A    + M + G++      N LI 
Sbjct: 413 ALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIG 472

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L ++S   +A+F   REM   GC P   +Y  LI GLC+ GK  EA    KEM      
Sbjct: 473 GLIRDSRLGEASF-FLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWK 531

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P + TY+ L+ GLC+ + ++ A+ L+ +    G+E +V  ++ L+ GLC  G    AM +
Sbjct: 532 PDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTV 591

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M  +    N+VTY+TL+ G  K G    A  I   M   GL+PD   Y  I+   C 
Sbjct: 592 MANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCM 651

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
                 A  F D+    GI P   TW++ +R
Sbjct: 652 CRGVSYAMEFFDDARNHGIFPTVYTWNILVR 682



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 134/279 (48%), Gaps = 4/279 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           VNKAL +     +   +G   D   ++ +I  L    +   A +L+  ++K   ++   +
Sbjct: 410 VNKALGVMQEVES---SGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHV 466

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
             ++  G  R  R  +A     +M + GC PT  SY  ++  L +  +   A  F + M 
Sbjct: 467 CNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEML 526

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G +P + + ++L+  LC++   +D A +++ +    G   D   +  LI+GLC +GK+
Sbjct: 527 ENGWKPDLKTYSILLCGLCRDR-KIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKL 585

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  +   ME + C+  +VTY +L+ G  +      A  ++  M   G++P++ +Y+++
Sbjct: 586 DDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTI 645

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
           M GLC     S AME      +    P + T++ L+  +
Sbjct: 646 MKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAV 684


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 226/454 (49%), Gaps = 12/454 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + +L      K +++A+ + D     +  G++ +  TF+ +I  L   N+   A  L
Sbjct: 152 VTLSSLLNGYCHSKRISEAVALVDQM---FVTGYQPNTVTFNTLIHGLFLHNKASEAVAL 208

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           +DR+  + C      +  +  G  +      A  + +KM++   EP    Y T++  L +
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCK 268

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              +  A   ++ M   GI+P V + + LI  LC N G    A ++  +M  R   PD +
Sbjct: 269 NKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC-NYGRWSDASRLLSDMIERKINPDVF 327

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           T+  LI+   + GK+ EA++L+ EM  ++  P++VTY+SLING C    ++EA ++FE M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            SK   P+V +YS+L+ G CK     + MEL + M  +    N VTY+TL+ GL + G  
Sbjct: 388 VSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDC 447

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
             A EI   M   G+ P+   Y  ++   C  GK ++A    + +    + P        
Sbjct: 448 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT------- 500

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           I  +N +++G+CK       + ++ ++  + +  D + Y+++I+ FC+KG   ++  +  
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFK 560

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           E+  DG LP+ G ++ ++ A         +AEL+
Sbjct: 561 EMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/414 (31%), Positives = 209/414 (50%), Gaps = 17/414 (4%)

Query: 53  FSLMISKLVSANQFRPAEDL---LDRVNKEKCDITEDIFLS-ICRGYGRVHRPLDAMRVF 108
           FS ++S +   N+F     L   +  +       T  I ++  CR   R   PL A+ V 
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCR---RSQLPL-ALAVL 139

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            KM + G EP   +  ++L       ++  A      M   G QP   + N LI  L  +
Sbjct: 140 GKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH 199

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +   +A   I R M  +GC PD  TYG ++NGLC+ G    A  L  +ME     P V+ 
Sbjct: 200 NKASEAVALIDR-MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLI 258

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT++I+GLC++K +++A+ LF+EM +KG+ PNV TYSSL+  LC  G  S A  LL  MI
Sbjct: 259 YTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            ++  P++ T+S L++   KEGKL EA ++ D M  + + P    Y  +I+ FC   +  
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDS 407
           EA    + MV     P+ +++S       T+++G CK    +   +++  M  R +  ++
Sbjct: 379 EAKQMFEFMVSKHCFPDVVSYS-------TLIKGFCKAKRVDEGMELFREMSQRGLVGNT 431

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +TY++LI    + GD   +  I  E+V DG  P+  T++ ++  L    K+ +A
Sbjct: 432 VTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 199/419 (47%), Gaps = 43/419 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T+ ++++ L        A  LL+++ + K +    I+ +I  G  +     
Sbjct: 214 AKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMD 273

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M+  G  P   +Y ++++ L    +   A R    M E  I P V + + LI
Sbjct: 274 DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 333

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  K  G +  A K++ EM  R   P   TY +LING C   ++ EAK++F+ M +K C
Sbjct: 334 DAFVK-EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMR----------------------------- 253
            P VV+Y++LI G C++K V+E M LF EM                              
Sbjct: 393 FPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQE 452

Query: 254 ------SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
                 S GV PN+ TY++L+DGLCK G   +AM + + +   +  P I TY+ ++ G+C
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K GK+++  ++   + L+G+KPD   Y  +IS FC  G  +EA     EM   G  PN  
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
            ++  IR        L   D   + ++   MR+   + D+ T   L+T     G + KS
Sbjct: 573 CYNTLIRAR------LRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLHDGRLDKS 624



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 184/364 (50%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M +    P+   +  +L+ + + N+  +       M+ +G+     + ++LI
Sbjct: 64  DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILI 123

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  P+  T  +L+NG C   +I EA  L  +M     
Sbjct: 124 NCFCRRS-QLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY 182

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VT+ +LI+GL       EA+ L + M +KG +P++ TY  +++GLCK G +  A  
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFI 242

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M   +  P ++ Y+T+++GLCK   + +A+ +   M+ +G++P+   Y  +ISC C
Sbjct: 243 LLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           + G++ +A+  L +M+   I P+  T+S        ++    K      A ++Y  M  R
Sbjct: 303 NYGRWSDASRLLSDMIERKINPDVFTFS-------ALIDAFVKEGKLVEAEKLYDEMVKR 355

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI    +TYSSLI  FC    + ++ ++ + +V   C PD  ++S ++      +++ + 
Sbjct: 356 SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEG 415

Query: 462 AELL 465
            EL 
Sbjct: 416 MELF 419



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 184/346 (53%), Gaps = 4/346 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K ++ AL +F     +   G R +  T+S +IS L +  ++  A  LL  + + K +   
Sbjct: 270 KHMDDALNLFKEMETK---GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             F ++   + +  + ++A +++D+M +   +P+  +Y +++      ++L  A + +  
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M      P V S + LIK  CK +  +D   ++FREM  RG   ++ TY TLI GL + G
Sbjct: 387 MVSKHCFPDVVSYSTLIKGFCK-AKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAG 445

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
               A+E+FKEM +    P ++TY +L++GLC++  +E+AM +FE ++   +EP ++TY+
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 505

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            +++G+CK G      +L   +  K  +P++V Y+T+++G C++G  +EA  +   MK  
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           G  P++G Y  +I      G  + +A  + EM   G   +  T  L
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 611



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 165/325 (50%), Gaps = 15/325 (4%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P +   + L+ A+ K +   D    +  +M N G   + YTY  LIN  CR  ++  A  
Sbjct: 79  PSIIEFSKLLSAIAKMN-KFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALA 137

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +  +M      P +VT +SL+NG C SK + EA+ L ++M   G +PN  T+++L+ GL 
Sbjct: 138 VLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLF 197

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
               +S+A+ L+  M++K  +P++VTY  ++NGLCK G    A  +L++M+   L+P   
Sbjct: 198 LHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVL 257

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDP 388
           +Y  II   C      +A N   EM   GI PN +T+S       +++  LC     +D 
Sbjct: 258 IYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYS-------SLISCLCNYGRWSDA 310

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           +R       M  R I+ D  T+S+LI  F K+G + ++ ++ DE+V     P   T+S++
Sbjct: 311 SRLLS---DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query: 449 MTALWDRRKMRQAAELLLLELMNKC 473
           +       ++ +A ++    +   C
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHC 392



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 157/308 (50%), Gaps = 9/308 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F EM      P    +  L++ + ++ K      L ++M+         TY+ 
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSI 121

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C+   +  A+ +  +M   G EPN+ T SSL++G C     S+A+ L+  M    
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++PN VT++TL++GL    K  EAV ++DRM  +G +PD   YG +++  C  G    A 
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             L++M  G + P  L       I+ T++ GLCK    + A  ++  M  + I  + +TY
Sbjct: 242 ILLNKMEQGKLEPGVL-------IYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           SSLI+C C  G    ++R++ +++     PD  T+SA++ A     K+ + AE L  E++
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE-AEKLYDEMV 353

Query: 471 NKCVEAEV 478
            + ++  +
Sbjct: 354 KRSIDPSI 361



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 1/182 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F +M   G  P   +Y T+L  L +  +L+ A   + +++   ++P + + N++I+
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +CK +G ++  + +F  +  +G  PD   Y T+I+G CR G   EA  LFKEM+     
Sbjct: 510 GMCK-AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 568

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    Y +LI    +    E +  L +EMRS G   +  T   + + L  G      +++
Sbjct: 569 PNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDM 628

Query: 284 LQ 285
           L 
Sbjct: 629 LS 630


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 198/350 (56%), Gaps = 9/350 (2%)

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           P+     + ++ E+G  P  + Y  ++    +E  ++ A   +  +R+ G++P   S N 
Sbjct: 204 PVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNT 263

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  LCK S  +D  F++ + M      PD +TY  LI+GLC+ G++  A++LF EM+ +
Sbjct: 264 LINGLCK-SRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQR 322

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  +T+T+LI+G C+S+ ++ AM  + +M + GV+P++  Y++L++GLCK G  ++A
Sbjct: 323 GLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKA 382

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +L+  M     +P+ +TY+TL++G CKEG L+ A+EI   M  +G+  D   +  +IS 
Sbjct: 383 RKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISG 442

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
           FC  G+ ++A   L EMV  G+ P+  T+++       V+ G CK  +    F++   M+
Sbjct: 443 FCRDGRVRDAERTLREMVEAGMKPDDATYTM-------VIDGYCKKGNVKMGFKLLKEMQ 495

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
                   +TY+ L+   CK+G +  +  +++ ++  G  PD+ T++ ++
Sbjct: 496 INGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILL 545



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 175/328 (53%), Gaps = 14/328 (4%)

Query: 140 FRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           FR  R+   +I    C   L+ +I     NS +    +  + E+   G  P    Y  LI
Sbjct: 176 FRLVRNSNFQIPFHGCGYLLDKMI-----NSNSPVTIWTFYSEILEYGFPPKVQYYNILI 230

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           N  C+ G I +AK +F E+  +   PT V++ +LINGLC+S++++E  RL + M    + 
Sbjct: 231 NKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIY 290

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P+VFTYS L+ GLCK G    A +L   M  +  RPN +T++ L++G C+  ++  A+  
Sbjct: 291 PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNT 350

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
             +M   G+KPD  +Y  +++  C +G   +A   +DEM + G+ P+++T++       T
Sbjct: 351 YHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYT-------T 403

Query: 379 VVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ G CK  D   A ++   M    + +D++ +++LI+ FC+ G +  + R + E+V  G
Sbjct: 404 LIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAG 463

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD+ T++ V+     +  ++   +LL
Sbjct: 464 MKPDDATYTMVIDGYCKKGNVKMGFKLL 491



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 196/386 (50%), Gaps = 14/386 (3%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           F S   EY  GF      ++++I+K       R A+ + + + K     T   F ++  G
Sbjct: 210 FYSEILEY--GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLING 267

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
             +     +  R+   M+E    P   +Y  ++  L +E +L +A + +  M++ G++P 
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPN 327

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             +   LI   C+ S  +D+A   + +M   G  PD   Y TL+NGLC++G + +A++L 
Sbjct: 328 GITFTALIDGQCR-SRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            EM      P  +TYT+LI+G C+   +E AM + + M  +GV  +   +++L+ G C+ 
Sbjct: 387 DEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD 446

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G    A   L+ M+    +P+  TY+ +++G CK+G ++   ++L  M++ G KP    Y
Sbjct: 447 GRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV 394
             +++  C  G+ + A   L+ M+  G+TP+ +T+       N +++G CK   N   + 
Sbjct: 507 NVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITY-------NILLEGHCK---NGKAED 556

Query: 395 YLSMRN-RSISVDSLTYSSLITCFCK 419
            L +RN + + VD   Y+SL++ + K
Sbjct: 557 LLKLRNEKGLIVDYAYYTSLVSEYNK 582



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 152/299 (50%), Gaps = 8/299 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           +SG +  A + FR + N       +  G L++ +            + E+      P V 
Sbjct: 165 DSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQ 224

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            Y  LIN  C+  S+ +A  +F E+R +G+ P   ++++L++GLCK     +   L + M
Sbjct: 225 YYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTM 284

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
              R  P++ TYS L++GLCKEG+L  A ++ D M+ +GL+P+   +  +I   C   + 
Sbjct: 285 EENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRI 344

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD 406
             A N   +M+  G+ P+       + ++NT++ GLCK  D N+A ++   MR   +  D
Sbjct: 345 DSAMNTYHQMLTMGVKPD-------LVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPD 397

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +TY++LI  +CK+GD+  +  I   +  +G + D   ++A+++      ++R A   L
Sbjct: 398 KITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTL 456


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 229/468 (48%), Gaps = 48/468 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHR 100
           A G R D   ++ ++   V+A     A  +L R+ + +     D F    +  G  R  +
Sbjct: 150 AAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGK 209

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             DA++VFD+M + G  P   +Y T++   V+   L+  FR    M   G +P V + NV
Sbjct: 210 GSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNV 269

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL----------------------- 197
           L+  LC+ +G MD    +  EM +    PD +TY  L                       
Sbjct: 270 LLSGLCR-TGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKK 328

Query: 198 ------------INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
                       +NGLC+ GK+ +AK++F+ +      PT V Y +LING CQ + +  A
Sbjct: 329 GVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGA 388

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             +FE+M+S+ + P+  TY++L++GLCK    ++A +L+  M      P++ T++TL++ 
Sbjct: 389 FCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDA 448

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
               G+L++   +L  M+ +G+K D   +G ++  FC  GK  EA   LD+M+   + PN
Sbjct: 449 YGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPN 508

Query: 366 RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
                   +++N+++    ++ D  +A  +   M+N  +S   +TY+ L+   C+   I 
Sbjct: 509 -------AQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQID 561

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           ++  ++  L   G  PD  +++ +++A  ++    +A E  LL+ MNK
Sbjct: 562 EAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE--LLQEMNK 607



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 194/382 (50%), Gaps = 12/382 (3%)

Query: 104 AMRVFDKMKEFGCEPTPK--SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           A+ +  +M      P P   SY  V+A L    +   A + +  M ++G+ P   + N +
Sbjct: 176 ALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTM 235

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I    K  G ++A F++  +M + G  P+  TY  L++GLCR G++ E + L  EM + +
Sbjct: 236 IDGHVKG-GDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHS 294

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P   TY+ L +GL ++   +  + LF E   KGV    +T S L++GLCK G  ++A 
Sbjct: 295 MLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAK 354

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++ +M++     P  V Y+TL+NG C+   L+ A  I ++MK + ++PD   Y  +I+  
Sbjct: 355 QVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGL 414

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
           C +    +A + + EM   G+ P+  T++  I  + T  Q        + F V   M+ +
Sbjct: 415 CKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ------LEKCFTVLSDMQQK 468

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I  D +++ S++  FCK G I ++  I+D+++     P+   +++++ A  +     QA
Sbjct: 469 GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQA 528

Query: 462 AELLLLELM-NKCVEAEVDIQN 482
             LLL+E M N  V A +   N
Sbjct: 529 --LLLVEKMKNSGVSASIVTYN 548



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 158/322 (49%), Gaps = 1/322 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T S++++ L    +   A+ + + +       T  I+ ++  GY +V     A  +F++M
Sbjct: 336 TCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM 395

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K     P   +Y  ++  L +   +  A      M + G+ P V + N LI A    +G 
Sbjct: 396 KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAY-GTAGQ 454

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++  F +  +M  +G   D  ++G+++   C+ GKI EA  +  +M  K  +P    Y S
Sbjct: 455 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+   +S   E+A+ L E+M++ GV  ++ TY+ L+ GLC+     +A EL+  + ++ 
Sbjct: 515 IIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 574

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RP++V+Y+T+++  C +G   +A+E+L  M   G++P       ++S     G+  +  
Sbjct: 575 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDME 634

Query: 352 NFLDEMVLGGITPNRLTWSLHI 373
               +M+   + P+   + + +
Sbjct: 635 CLYQQMLHKNVEPSSSIYGIMV 656



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 137/263 (52%), Gaps = 1/263 (0%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M++ G +P+ +++ T++       QL+  F     M++ GI+  V S   ++KA CKN 
Sbjct: 429 EMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN- 487

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A  I  +M  +   P++  Y ++I+     G   +A  L ++M+    S ++VTY
Sbjct: 488 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTY 547

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             L+ GLC+S  ++EA  L   +R++G+ P+V +Y++++   C  G + +A+ELLQ M  
Sbjct: 548 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              RP + T  TL++ L   G++ +   +  +M  + ++P + +YG ++  +       +
Sbjct: 608 YGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSK 667

Query: 350 AANFLDEMVLGGITPNRLTWSLH 372
            A+   EM   GI  +    S H
Sbjct: 668 VASLKKEMSEKGIAFDDTKRSNH 690



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 4/283 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +D+  A  IF+   + +    R D+ T++ +I+ L        AEDL+  + K   D + 
Sbjct: 383 RDLRGAFCIFEQMKSRH---IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSV 439

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           + F ++   YG   +      V   M++ G +    S+ +V+    +  ++  A      
Sbjct: 440 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 499

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M    + P     N +I A  + SG  + A  +  +M N G +    TY  L+ GLCR  
Sbjct: 500 MIYKDVAPNAQVYNSIIDAYIE-SGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSS 558

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +I EA+EL   +  +   P VV+Y ++I+  C     ++A+ L +EM   G+ P + T  
Sbjct: 559 QIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCH 618

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           +L+  L   G       L Q M+ K   P+   Y  +++   +
Sbjct: 619 TLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVR 661



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P++ + + LL  L   G+  +       +   G +PD   + K++      G    A   
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSS 412
           L  M      P    +S     +N V+ GL ++     A +V+  M +  ++ + +TY++
Sbjct: 180 LRRMGRSEGAPPPDAFS-----YNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNT 234

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I    K GD+    R+ D+++ DG  P+  T++ +++ L    +M +   L+
Sbjct: 235 MIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALM 287


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 215/434 (49%), Gaps = 21/434 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ ++  L   ++   A D   ++ +  C      F ++  G  R  R ++A
Sbjct: 144 GLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEA 203

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +PT  +Y T++  + ++     A    R M E+  I P V   + +I 
Sbjct: 204 VALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK+    DA   +F EM  +G  PD +TY ++I G C  G+  +A++L +EM  +  S
Sbjct: 264 SLCKDGRHSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS 322

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY +LIN   +     EA  L++EM  +G+ PN  TYSS++DG CK      A  +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M +K   PN++T++TL++G C   ++ + +E+L  M   GL  D   Y  +I  F  
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT----DPNRAFQVYLSMR 399
           +G    A + L EM+  G+ P+ +T        +T++ GLC      D    F+V    +
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTC-------DTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 400 N--------RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
                      +  D  TY+ LI+    +G   ++  + +E+   G +PD  T+S+++  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 452 LWDRRKMRQAAELL 465
           L  + ++ +A ++ 
Sbjct: 556 LCKQSRLDEATQMF 569



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 208/419 (49%), Gaps = 41/419 (9%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+ +I     +  R  DA  +F +M+E G  P   +Y +++       +   A +  + M
Sbjct: 257 IYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM 316

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E  I P V + N LI A  K  G    A +++ EM  RG  P++ TY ++I+G C+  +
Sbjct: 317 LERKISPDVVTYNALINAFVKE-GKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A+ +F  M TK CSP ++T+ +LI+G C +K +++ M L  EM   G+  +  TY++
Sbjct: 376 LDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK--- 323
           L+ G    G  + A++LLQ MIS    P+IVT  TLL+GLC  GKL++A+E+   M+   
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 324 --------LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR- 374
                     G++PD   Y  +IS   + GK+ EA    +EM   GI P+ +T+S  I  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 375 ---------------------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVD 406
                                         T++ G CK    +   +++  M  R I  +
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++TY +LI  F K G+I+ +  I  E++  G  PD  T   ++T LW + ++++A  +L
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAML 674



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 12/331 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I+  V   +F  AE+L D +           + S+  G+ + +R   A  +F
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M   GC P   ++ T++       ++         M E G+     + N LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF-YL 442

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET--------- 219
            G ++AA  + +EM + G  PD  T  TL++GLC  GK+ +A E+FK M+          
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502

Query: 220 --KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P V TY  LI+GL       EA  L+EEM  +G+ P+  TYSS++DGLCK    
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A ++   M SK   PN+VT++TL+NG CK G++ + +E+   M  +G+  +A  Y  +
Sbjct: 563 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           I  F  +G    A +   EM+  G+ P+ +T
Sbjct: 623 ICGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D    ++++M  +    D Y++  LI   C   K+  A   F ++      P VVT+T+L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL 155

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           ++GLC    V EA+  F +M      PNV T+++LM+GLC+ G   +A+ LL  M+    
Sbjct: 156 LHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-LQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           +P  +TY T+++G+CK+G    A+ +L +M+ +  + P+  +Y  II   C  G++ +A 
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           N   EM   GI P+  T+       N+++ G C +   + A Q+   M  R IS D +TY
Sbjct: 276 NLFTEMQEKGIFPDLFTY-------NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           ++LI  F K+G   ++  + DE++  G +P+  T+S+++     + ++  A  +  L   
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388

Query: 471 NKC 473
             C
Sbjct: 389 KGC 391



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 149/295 (50%), Gaps = 9/295 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L+  + R+ +      L+++ME K     + ++  
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI   C    +  A+  F ++   G+ P+V T+++L+ GLC     S+A++    M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RPN+VT++TL+NGLC+EG++ EAV +LDRM   GL+P    YG I+   C  G    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSISVDSLT 409
           N L +M  +  I PN       + I++ ++  LCK   +   Q ++  M+ + I  D  T
Sbjct: 240 NLLRKMEEVSHIIPN-------VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+S+I  FC  G    + +++ E++     PD  T++A++ A     K  +A EL
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 152/284 (53%), Gaps = 12/284 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I     A +     +LL  + +         + ++  G+  V     A+ +  +M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GIQPCVASLNV 160
              G  P   +  T+L  L +  +LK A   ++ M++            G++P V + N+
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  L  N G    A +++ EMP+RG  PD+ TY ++I+GLC+  ++ EA ++F  M +K
Sbjct: 517 LISGLI-NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 575

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
           + SP VVT+T+LING C++  V++ + LF EM  +G+  N  TY +L+ G  K G  + A
Sbjct: 576 SFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGA 635

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +++ Q MIS    P+ +T   +L GL  + +L+ AV +L+++++
Sbjct: 636 LDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 36/210 (17%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++++IS L++  +F  AE+L                               
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEEL------------------------------- 533

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               +++M   G  P   +Y +++  L ++++L  A + +  M      P V +   LI 
Sbjct: 534 ----YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 589

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK +G +D   ++F EM  RG   ++ TY TLI G  ++G I  A ++F+EM +    
Sbjct: 590 GYCK-AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           P  +T  +++ GL   + ++ A+ + E+++
Sbjct: 649 PDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 209/415 (50%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+ ++++ L        A +LL+++   K +    IF +I     +     DA+ +F +M
Sbjct: 152 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 211

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y ++++ L    +   A +    M E  I P + + N LI A  K  G 
Sbjct: 212 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK-EGK 270

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A K+  +M  R   PD +TY +LING C   ++ +AK++F+ M +K C P + TY +
Sbjct: 271 FVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 330

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI G C+SK VE+   LF EM  +G+  +  TY++L+ GL   G    A ++ + M+S  
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+I+TYS LL+GLC  GKL++A+E+ D M+   +K D  +Y  +I   C  GK  +  
Sbjct: 391 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTY 410
           +    + L G+ PN +T+       NT++ GLC K     A+ +   M+      DS TY
Sbjct: 451 DLFCSLSLKGVKPNVVTY-------NTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTY 503

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++LI    + GD   SA ++ E+     + D  T   V   L D R  +   ++L
Sbjct: 504 NTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDML 558



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 120/378 (31%), Positives = 200/378 (52%), Gaps = 12/378 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  KM + G EP+  +  ++L       ++  A      M E+G +P   +   LI 
Sbjct: 64  ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 123

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L  ++   +A   + R M  RGC P+  TYG ++NGLC+ G I  A  L  +ME     
Sbjct: 124 GLFLHNKASEAVALVDR-MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 182

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VV + ++I+ LC+ + V++A+ LF+EM +KG+ PNV TYSSL+  LC  G  S A +L
Sbjct: 183 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 242

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI K+  PN+VT++ L++   KEGK  EA ++ D M  + + PD   Y  +I+ FC 
Sbjct: 243 LSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCM 302

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
             +  +A    + MV     P+  T+       NT+++G CK+       +++  M +R 
Sbjct: 303 HDRLDKAKQMFEFMVSKDCFPDLDTY-------NTLIKGFCKSKRVEDGTELFREMSHRG 355

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D++TY++LI      GD   + ++  ++V DG  PD  T+S ++  L +  K+ +A 
Sbjct: 356 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 415

Query: 463 ELLLLELMNKCVEAEVDI 480
           E  + + M K  E ++DI
Sbjct: 416 E--VFDYMQKS-EIKLDI 430



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F ++  G    ++  +A+ + D+M + GC+P   +Y  V+  L +   + LAF     M 
Sbjct: 118 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME 177

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              I+  V   N +I +LCK    +D A  +F+EM  +G  P+  TY +LI+ LC  G+ 
Sbjct: 178 AAKIEADVVIFNTIIDSLCKYR-HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 236

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A +L  +M  K  +P +VT+ +LI+   +     EA +L ++M  + ++P++FTY+SL
Sbjct: 237 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++G C      +A ++ + M+SK   P++ TY+TL+ G CK  ++++  E+   M  +GL
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
             D   Y  +I      G    A     +MV  G+ P+ +T+S+       ++ GLC   
Sbjct: 357 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI-------LLDGLCNNG 409

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
              +A +V+  M+   I +D   Y+++I   CK G +     +   L L G  P+  T++
Sbjct: 410 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 469

Query: 447 AVMTALWDRRKMRQAAELL 465
            +++ L  +R +++A  LL
Sbjct: 470 TMISGLCSKRLLQEAYALL 488



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 173/349 (49%), Gaps = 9/349 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P+   +  +L+ + +  +  L       M+ +GI   + + N+LI   C+ S  +  A  
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRS-QISLALA 66

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  +M   G  P   T  +L+NG C   +I +A  L  +M      P  +T+T+LI+GL 
Sbjct: 67  LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
                 EA+ L + M  +G +PN+ TY  +++GLCK G    A  LL  M + +   ++V
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 186

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            ++T+++ LCK   + +A+ +   M+ +G++P+   Y  +ISC C  G++ +A+  L +M
Sbjct: 187 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 246

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITC 416
           +   I PN +T+       N ++    K      A +++  M  RSI  D  TY+SLI  
Sbjct: 247 IEKKINPNLVTF-------NALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING 299

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           FC    + K+ ++ + +V   C PD  T++ ++      +++    EL 
Sbjct: 300 FCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELF 348



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 17/201 (8%)

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+  R  P+I  ++ LL+ + K  K    + + ++M+  G+  +   Y  +I+CFC   +
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
              A   L +M+  G  P+ +T S       +++ G C     + A  +   M       
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLS-------SLLNGYCHGKRISDAVALVDQMVEMGYRP 113

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D++T+++LI          ++  +VD +V  GC P+  T+  V+  L  R  +  A    
Sbjct: 114 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA---- 169

Query: 466 LLELMNKC----VEAEVDIQN 482
              L+NK     +EA+V I N
Sbjct: 170 -FNLLNKMEAAKIEADVVIFN 189


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 225/464 (48%), Gaps = 44/464 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRP 101
           +G +    T+  ++  +        A DLL R  +E   I  +  I+ +I     +  R 
Sbjct: 213 DGLQPTQITYGTIVDGMCKIGDTVSALDLL-RKMEEISHIIPNVVIYSAIIDSLCKDGRH 271

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            DA  +F +M+E G  P   +Y +++       +   A +  + M E  I P V + N L
Sbjct: 272 SDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNAL 331

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I A  K  G    A +++ EM  RG  P++ TY ++I+G C+  ++  A+ +F  M TK 
Sbjct: 332 INAFVKE-GKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 390

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP ++T+ +LI+G C +K +++ M L  EM   G+  +  TY++L+ G    G  + A+
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAAL 450

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-----------LQGLKPD 330
           +LLQ MIS    P+IVT  TLL+GLC  GKL++A+E+   M+             G++PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR---------------- 374
              Y  +IS   + GK+ EA    +EM   GI P+ +T+S  I                 
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFD 570

Query: 375 ------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
                          T++ G CK    +   +++  M  R I  +++TY +LI  F K G
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVG 630

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I+ +  I  E++  G  PD  T   ++T LW + ++++A  +L
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAML 674



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 215/434 (49%), Gaps = 21/434 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ ++  L   ++   A +L  ++ +  C      F ++  G  R  R ++A
Sbjct: 144 GLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEA 203

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +PT  +Y T++  + +      A    R M EI  I P V   + +I 
Sbjct: 204 VALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIID 263

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK+    DA   +F EM  +G  PD +TY ++I G C  G+  +A++L +EM  +  S
Sbjct: 264 SLCKDGRHSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS 322

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY +LIN   +     EA  L++EM  +G+ PN  TYSS++DG CK      A  +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M +K   PN++T++TL++G C   ++ + +E+L  M   GL  D   Y  +I  F  
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT----DPNRAFQVYLSMR 399
           +G    A + L EM+  G+ P+ +T        +T++ GLC      D    F+V    +
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTC-------DTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 400 N--------RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
                      +  D  TY+ LI+    +G   ++  + +E+   G +PD  T+S+++  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 452 LWDRRKMRQAAELL 465
           L  + ++ +A ++ 
Sbjct: 556 LCKQSRLDEATQMF 569



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 192/406 (47%), Gaps = 45/406 (11%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           R+ RP   + ++ KM+         S+  ++      ++L  A   +  + ++G+ P V 
Sbjct: 91  RMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVV 150

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N L+  LC     +  A  +F +M    C P+  T+ TL+NGLCR G+I EA  L   
Sbjct: 151 TFNTLLHGLCVED-RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDR 209

Query: 217 METKACSPTVVTYTSLINGLCQS----------KSVEE---------------------- 244
           M      PT +TY ++++G+C+           + +EE                      
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDG 269

Query: 245 ----AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
               A  LF EM+ KG+ P++FTY+S++ G C  G  S A +LLQ M+ ++  P++VTY+
Sbjct: 270 RHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            L+N   KEGK  EA E+ D M  +G+ P+   Y  +I  FC   +   A +    M   
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           G +PN +T+       NT++ G C     +   ++   M    +  D+ TY++LI  F  
Sbjct: 390 GCSPNLITF-------NTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            GD++ +  ++ E++  G  PD  T   ++  L D  K++ A E+ 
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D    ++++M  +    D Y++  LI   C   K+  A   F ++      P VVT+ +L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTL 155

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           ++GLC    V EA+ LF +M      PNV T+++LM+GLC+ G   +A+ LL  M+    
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-LQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           +P  +TY T+++G+CK G    A+++L +M+ +  + P+  +Y  II   C  G++ +A 
Sbjct: 216 QPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           N   EM   GI P+  T+       N+++ G C +   + A Q+   M  R IS D +TY
Sbjct: 276 NLFTEMQEKGIFPDLFTY-------NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           ++LI  F K+G   ++  + DE++  G +P+  T+S+++     + ++  A  +  L   
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388

Query: 471 NKC 473
             C
Sbjct: 389 KGC 391



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 151/295 (51%), Gaps = 9/295 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L+  + R+ +      L+++ME K     + ++T 
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI   C    +  A+  F ++   G+ P+V T+++L+ GLC     S+A+ L   M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RPN+VT++TL+NGLC+EG++ EAV +LDRM   GL+P    YG I+   C IG    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL 239

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSISVDSLT 409
           + L +M  +  I PN       + I++ ++  LCK   +   Q ++  M+ + I  D  T
Sbjct: 240 DLLRKMEEISHIIPN-------VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+S+I  FC  G    + +++ E++     PD  T++A++ A     K  +A EL
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 152/284 (53%), Gaps = 12/284 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I     A +     +LL  + +         + ++  G+  V     A+ +  +M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GIQPCVASLNV 160
              G  P   +  T+L  L +  +LK A   ++ M++            G++P V + N+
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  L  N G    A +++ EMP+RG  PD+ TY ++I+GLC+  ++ EA ++F  M +K
Sbjct: 517 LISGLI-NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 575

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
           + SP VVT+T+LING C++  V++ + LF EM  +G+  N  TY +L+ G  K G  + A
Sbjct: 576 SFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGA 635

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +++ Q MIS    P+ +T   +L GL  + +L+ AV +L+++++
Sbjct: 636 LDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 36/210 (17%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++++IS L++  +F  AE+L                               
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEEL------------------------------- 533

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               +++M   G  P   +Y +++  L ++++L  A + +  M      P V +   LI 
Sbjct: 534 ----YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 589

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK +G +D   ++F EM  RG   ++ TY TLI G  ++G I  A ++F+EM +    
Sbjct: 590 GYCK-AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           P  +T  +++ GL   + ++ A+ + E+++
Sbjct: 649 PDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 198/371 (53%), Gaps = 9/371 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+ +  +++ +I    S      A  +LD +  +  +     + S+  G  +  R  +A
Sbjct: 203 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEA 262

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FDKM E G  P   +Y T++     +  L+ AF +   M + GI P V++ N+L+ A
Sbjct: 263 SGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHA 322

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L    G M  A  + +EM  +G  PD+ TY  LING  R G    A +L  EM +K   P
Sbjct: 323 LFM-EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEP 381

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T VTYTSLI  L +   ++EA  LFE++  +GV P+V  +++++DG C  G   +A  LL
Sbjct: 382 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLL 441

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P+ VT++TL+ G C+EGK++EA  +LD MK +G+KPD   Y  +IS +   
Sbjct: 442 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRR 501

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           G  ++A    DEM+  G  P  LT+       N +++ LCK  + + A ++   M N+ I
Sbjct: 502 GDIKDAFXVRDEMLSIGFNPTLLTY-------NALIKCLCKNQEGDLAEELLKEMVNKGI 554

Query: 404 SVDSLTYSSLI 414
           S D  TY SLI
Sbjct: 555 SPDDSTYLSLI 565



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 187/368 (50%), Gaps = 9/368 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + +I  GY        A R+ D M+  G EP   +Y ++++ + +E +L+ A   +  M 
Sbjct: 211 YNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMV 270

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           EIG+ P   + N LI   C N G ++ AF    EM  +G  P   TY  L++ L   G++
Sbjct: 271 EIGLVPNAVTYNTLIDGYC-NKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRM 329

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA ++ KEM  K   P  +TY  LING  +  + + A  L  EM SKG+EP   TY+SL
Sbjct: 330 GEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSL 389

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +  L +     +A +L + ++ +   P+++ ++ +++G C  G ++ A  +L  M  + +
Sbjct: 390 IYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSV 449

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-T 386
            PD   +  ++   C  GK +EA   LDEM   GI P+ +++       NT++ G  +  
Sbjct: 450 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISY-------NTLISGYGRRG 502

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           D   AF V   M +   +   LTY++LI C CK  +   +  ++ E+V  G  PD+ T+ 
Sbjct: 503 DIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYL 562

Query: 447 AVMTALWD 454
           +++  + +
Sbjct: 563 SLIEGMGN 570



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 192/381 (50%), Gaps = 45/381 (11%)

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           E +LK A  F   M  +G +P V S N +I     + G ++ A +I   M  +G  PDSY
Sbjct: 186 EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYS-SRGNIEGARRILDAMRVKGIEPDSY 244

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE--------- 243
           TYG+LI+G+C+ G++ EA  LF +M      P  VTY +LI+G C    +E         
Sbjct: 245 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 304

Query: 244 --------------------------EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                                     EA  + +EMR KG+ P+  TY+ L++G  + G +
Sbjct: 305 VKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNA 364

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A +L   M+SK   P  VTY++L+  L +  +++EA ++ +++  QG+ PD  ++  +
Sbjct: 365 KRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAM 424

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS 397
           I   C  G  + A   L EM    + P+ +T+       NT++QG C+       ++ L 
Sbjct: 425 IDGHCANGNVERAFMLLKEMDRKSVPPDEVTF-------NTLMQGRCREGKVEEARMLLD 477

Query: 398 -MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+ R I  D ++Y++LI+ + ++GDI  +  + DE++  G  P   T++A++  L  + 
Sbjct: 478 EMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLC-KN 536

Query: 457 KMRQAAELLLLELMNKCVEAE 477
           +    AE LL E++NK +  +
Sbjct: 537 QEGDLAEELLKEMVNKGISPD 557



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 137/264 (51%), Gaps = 1/264 (0%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           ST++L++  L    +   A+D++  + K+        +  +  GY R      A  + ++
Sbjct: 314 STYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNE 373

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M   G EPT  +Y +++ +L   N++K A   +  + + G+ P V   N +I   C N G
Sbjct: 374 MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCAN-G 432

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++ AF + +EM  +   PD  T+ TL+ G CR GK+ EA+ L  EM+ +   P  ++Y 
Sbjct: 433 NVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYN 492

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LI+G  +   +++A  + +EM S G  P + TY++L+  LCK      A ELL+ M++K
Sbjct: 493 TLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK 552

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQE 314
              P+  TY +L+ G+     L E
Sbjct: 553 GISPDDSTYLSLIEGMGNVDTLVE 576



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 1/165 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D   F+ MI    +      A  LL  ++++     E  F ++ +G  R  +  +A
Sbjct: 413 GVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEA 472

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + D+MK  G +P   SY T+++       +K AF     M  IG  P + + N LIK 
Sbjct: 473 RMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKC 532

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           LCKN    D A ++ +EM N+G +PD  TY +LI G+  +  + E
Sbjct: 533 LCKNQ-EGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 576



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 7/213 (3%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           FD      + G    + T++ +I  L   N+ + A+DL +++  +       +F ++  G
Sbjct: 368 FDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDG 427

Query: 95  Y---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151
           +   G V R   A  +  +M      P   ++ T++     E +++ A      M+  GI
Sbjct: 428 HCANGNVER---AFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGI 484

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P   S N LI    +  G +  AF +  EM + G  P   TY  LI  LC+  +   A+
Sbjct: 485 KPDHISYNTLISGYGRR-GDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAE 543

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           EL KEM  K  SP   TY SLI G+    ++ E
Sbjct: 544 ELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 576


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 138/465 (29%), Positives = 229/465 (49%), Gaps = 22/465 (4%)

Query: 21   LIRAEKDVNK---ALVIFDSATAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
            L R  KD  K   A+++F     E+   G   + ++++++I  +    + + A  LL  +
Sbjct: 660  LTRLSKDCYKTATAIIVF----REFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL--L 713

Query: 77   NKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
              E    T D+  + ++  GY R        ++ + MK  G +P    Y +++ +L    
Sbjct: 714  LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 773

Query: 135  QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
            +L  A   +  M   GI P       LI   CK  G + AA K F EM +R  TPD  TY
Sbjct: 774  KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR-GDIRAASKFFYEMHSRDITPDVLTY 832

Query: 195  GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
              +I+G C++G + EA +LF EM  K   P  VT+T LING C++  +++A R+   M  
Sbjct: 833  TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 892

Query: 255  KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             G  PNV TY++L+DGLCK G    A ELL  M     +PNI TY++++NGLCK G ++E
Sbjct: 893  AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE 952

Query: 315  AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
            AV+++   +  GL  D   Y  ++  +C  G+  +A   L EM+  G+ P  +T+     
Sbjct: 953  AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTF----- 1007

Query: 375  IHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              N ++ G C        +  L+ M  + I+ ++ T++SL+  +C + ++  +  I  ++
Sbjct: 1008 --NVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 1065

Query: 434  VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
               G  PD  T+  ++      R M++A   L  E+  K     V
Sbjct: 1066 CSRGVGPDGKTYENLVKGHCKARNMKEAW-FLFQEMKGKGFSVSV 1109



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 198/396 (50%), Gaps = 32/396 (8%)

Query: 112  KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            K++G +P  + +     +LV+   L+ A R +  M   G+   V S NV +  L K+   
Sbjct: 612  KDWGSDP--RVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYK 669

Query: 172  MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
               A  +FRE P  G   +  +Y  +I+ +C+LG+I EA  L   ME K  +P V++Y++
Sbjct: 670  TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYST 729

Query: 232  LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            ++NG C+   +++  +L E M+ KG++PN + Y S++  LC+    ++A E    MI + 
Sbjct: 730  VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG 789

Query: 292  HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              P+ V Y+TL++G CK G ++ A +    M  + + PD   Y  IIS FC IG   EA 
Sbjct: 790  ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 849

Query: 352  NFLDEMVLGGITPNRLTWSLHI-------------RIHN---------------TVVQGL 383
                EM   G+ P+ +T++  I             R+HN               T++ GL
Sbjct: 850  KLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 909

Query: 384  CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
            CK  D + A ++   M    +  +  TY+S++   CK G+I ++ ++V E    G   D 
Sbjct: 910  CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 969

Query: 443  GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
             T++ +M A     +M +A E +L E++ K ++  +
Sbjct: 970  VTYTTLMDAYCKSGEMDKAQE-ILKEMLGKGLQPTI 1004



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 178/366 (48%), Gaps = 13/366 (3%)

Query: 44   NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRP 101
             G   D   ++ +I         R A      ++    DIT D+  + +I  G+ ++   
Sbjct: 788  QGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR--DITPDVLTYTAIISGFCQIGDM 845

Query: 102  LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            ++A ++F +M   G EP   ++  ++    +   +K AFR + HM + G  P V +   L
Sbjct: 846  VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 905

Query: 162  IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
            I  LCK  G +D+A ++  EM   G  P+ +TY +++NGLC+ G I EA +L  E E   
Sbjct: 906  IDGLCKE-GDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 964

Query: 222  CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             +   VTYT+L++  C+S  +++A  + +EM  KG++P + T++ LM+G C  G      
Sbjct: 965  LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1024

Query: 282  ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            +LL  M++K   PN  T+++L+   C    L+ A  I   M  +G+ PD   Y  ++   
Sbjct: 1025 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 1084

Query: 342  CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRN 400
            C     +EA     EM   G       +S+ +  ++ +++G  K      A +V+  MR 
Sbjct: 1085 CKARNMKEAWFLFQEMKGKG-------FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 1137

Query: 401  RSISVD 406
              ++ D
Sbjct: 1138 EGLAAD 1143



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 1/279 (0%)

Query: 88   FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
            F  +  GY +     DA RV + M + GC P   +Y T++  L +E  L  A      M 
Sbjct: 867  FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 926

Query: 148  EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +IG+QP + + N ++  LCK SG ++ A K+  E    G   D+ TY TL++  C+ G++
Sbjct: 927  KIGLQPNIFTYNSIVNGLCK-SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM 985

Query: 208  YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             +A+E+ KEM  K   PT+VT+  L+NG C    +E+  +L   M +KG+ PN  T++SL
Sbjct: 986  DKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSL 1045

Query: 268  MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
            +   C       A  + + M S+   P+  TY  L+ G CK   ++EA  +   MK +G 
Sbjct: 1046 VKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGF 1105

Query: 328  KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
                  Y  +I  F    K+ EA    D+M   G+  ++
Sbjct: 1106 SVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 1144



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 1/230 (0%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
            G + +  T++ +++ L  +     A  L+        +     + ++   Y +      A
Sbjct: 929  GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 988

Query: 105  MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              +  +M   G +PT  ++  ++        L+   +    M   GI P   + N L+K 
Sbjct: 989  QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 1048

Query: 165  LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             C  +  + AA  I+++M +RG  PD  TY  L+ G C+   + EA  LF+EM+ K  S 
Sbjct: 1049 YCIRN-NLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSV 1107

Query: 225  TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            +V TY+ LI G  + K   EA  +F++MR +G+  +   +    D   KG
Sbjct: 1108 SVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKG 1157


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 209/415 (50%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+ ++++ L        A +LL+++   K +    IF +I     +     DA+ +F +M
Sbjct: 151 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 210

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y ++++ L    +   A +    M E  I P + + N LI A  K  G 
Sbjct: 211 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK-EGK 269

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A K+  +M  R   PD +TY +LING C   ++ +AK++F+ M +K C P + TY +
Sbjct: 270 FVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 329

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI G C+SK VE+   LF EM  +G+  +  TY++L+ GL   G    A ++ + M+S  
Sbjct: 330 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 389

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+I+TYS LL+GLC  GKL++A+E+ D M+   +K D  +Y  +I   C  GK  +  
Sbjct: 390 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 449

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTY 410
           +    + L G+ PN +T+       NT++ GLC K     A+ +   M+      DS TY
Sbjct: 450 DLFCSLSLKGVKPNVVTY-------NTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTY 502

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++LI    + GD   SA ++ E+     + D  T   V   L D R  +   ++L
Sbjct: 503 NTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDML 557



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 200/378 (52%), Gaps = 12/378 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           ++ +  KM + G EP+  +  ++L       ++  A      M E+G +P   +   LI 
Sbjct: 63  SLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 122

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L  ++   +A   + R M  RGC P+  TYG ++NGLC+ G I  A  L  +ME     
Sbjct: 123 GLFLHNKASEAVALVDR-MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 181

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VV + ++I+ LC+ + V++A+ LF+EM +KG+ PNV TYSSL+  LC  G  S A +L
Sbjct: 182 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 241

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI K+  PN+VT++ L++   KEGK  EA ++ D M  + + PD   Y  +I+ FC 
Sbjct: 242 LSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCM 301

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
             +  +A    + MV     P+  T+       NT+++G CK+       +++  M +R 
Sbjct: 302 HDRLDKAKQMFEFMVSKDCFPDLDTY-------NTLIKGFCKSKRVEDGTELFREMSHRG 354

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D++TY++LI      GD   + ++  ++V DG  PD  T+S ++  L +  K+ +A 
Sbjct: 355 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 414

Query: 463 ELLLLELMNKCVEAEVDI 480
           E  + + M K  E ++DI
Sbjct: 415 E--VFDYMQKS-EIKLDI 429



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F ++  G    ++  +A+ + D+M + GC+P   +Y  V+  L +   + LAF     M 
Sbjct: 117 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME 176

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              I+  V   N +I +LCK    +D A  +F+EM  +G  P+  TY +LI+ LC  G+ 
Sbjct: 177 AAKIEADVVIFNTIIDSLCKYR-HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 235

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A +L  +M  K  +P +VT+ +LI+   +     EA +L ++M  + ++P++FTY+SL
Sbjct: 236 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 295

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++G C      +A ++ + M+SK   P++ TY+TL+ G CK  ++++  E+   M  +GL
Sbjct: 296 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 355

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
             D   Y  +I      G    A     +MV  G+ P+ +T+S+       ++ GLC   
Sbjct: 356 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI-------LLDGLCNNG 408

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
              +A +V+  M+   I +D   Y+++I   CK G +     +   L L G  P+  T++
Sbjct: 409 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 468

Query: 447 AVMTALWDRRKMRQAAELL 465
            +++ L  +R +++A  LL
Sbjct: 469 TMISGLCSKRLLQEAYALL 487



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 31/218 (14%)

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI--LDRMKLQGLKPDAGLYGK 336
            A+ L   M+  R  P+I  ++ LL+ + K  K    + +  L +M   G +P       
Sbjct: 25  DAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSS 84

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR---IHN---------------- 377
           +++ +C   +  +A   +D+MV  G  P+ +T++  I    +HN                
Sbjct: 85  LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 144

Query: 378 ---------TVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                     VV GLCK  D + AF +   M    I  D + ++++I   CK   +  + 
Sbjct: 145 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 204

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  E+   G  P+  T+S++++ L    +   A++LL
Sbjct: 205 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 228/439 (51%), Gaps = 18/439 (4%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLV-SANQFRPAEDLLDRVNKEKCDITEDIFL 89
           A+  FD A  +  +G++HD  +++ ++  LV S + FR  +   D ++   C      F 
Sbjct: 10  AIQFFDWAGEQ--DGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHS-GCSPNLVTFK 66

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            + RG  +  + + A+     + EF   P    +  ++  L ++     A + + +M   
Sbjct: 67  ILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESS 126

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKI 207
            ++P + + N +I  LCK SG ++ A ++  EM  +G    PD  TY TLIN   R  +I
Sbjct: 127 RVKPEIVTYNTVISGLCK-SGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRI 185

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA    ++M+    +P V+T   L++G+C+   VEEA+ + + M+  G  P+V TY+S+
Sbjct: 186 REACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSI 245

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +  LC  G   +A E+L+ M      P++VT++TLL+G CK G L  A+E+L+ M  + +
Sbjct: 246 IHALCVAGKVVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENI 302

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT- 386
            PD   Y  +++  C +G+ Q A   L+E+V  G  P+ + ++       ++V GLCK+ 
Sbjct: 303 LPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYT-------SLVDGLCKSG 355

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           +   A ++   M  R      + YSSL++ +C+ G++HK+  I+ E+V    +P   T++
Sbjct: 356 EIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYN 415

Query: 447 AVMTALWDRRKMRQAAELL 465
            V+  L     + +A  L+
Sbjct: 416 IVLGGLIKDGSISKAVSLI 434



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 211/429 (49%), Gaps = 41/429 (9%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRGYGRVHRPLDA 104
           D  T++ +I+    A++ R A    +++     +   +T +I +S IC+  G V    +A
Sbjct: 168 DIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKD-GDVE---EA 223

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + D MK  G  P   +Y +++  L    ++  A    + M      P + + N L+  
Sbjct: 224 LEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDG 280

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK +G +  A ++  EM      PD  TY  L+NGLCR+G++  A  L +E+  +   P
Sbjct: 281 FCK-AGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIP 339

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V+ YTSL++GLC+S  +EEA +L +EM  +G    V  YSSL+ G C+ G   +A E+L
Sbjct: 340 DVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREIL 399

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+S    P + TY+ +L GL K+G + +AV ++  +  +G  PD   Y  +I   C  
Sbjct: 400 AEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKA 459

Query: 345 GKYQEAANFLDEMVLGGITPNRLT-----------------WSL-----------HIRIH 376
            + +EA +  DEM   G  PN +T                 WSL           ++ ++
Sbjct: 460 NRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVY 519

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            +++ GLCK+D  + A  V  +MR + +++D   Y  LI      G + ++  + DE+V 
Sbjct: 520 TSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVA 579

Query: 436 DGCLPDEGT 444
            G LPD  T
Sbjct: 580 RGFLPDGST 588



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 199/366 (54%), Gaps = 14/366 (3%)

Query: 104 AMRVFDKMKEFGCEPTPK--SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           A  + ++M   G +  P   +Y T++      ++++ A  F   M+  GI P V + N+L
Sbjct: 151 ARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNIL 210

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  +CK+ G ++ A +I   M   G  PD  TY ++I+ LC  GK+ EA E+ K M   +
Sbjct: 211 VSGICKD-GDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---S 266

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP +VT+ +L++G C++  +  A+ + EEM  + + P+V TY+ L++GLC+ G    A 
Sbjct: 267 CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAF 326

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ ++ + + P+++ Y++L++GLCK G+++EA +++  M ++G +    +Y  ++S +
Sbjct: 327 YLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGY 386

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  G   +A   L EMV   + P   T+       N V+ GL K    ++A  +   +  
Sbjct: 387 CRAGNVHKAREILAEMVSINMVPPLFTY-------NIVLGGLIKDGSISKAVSLISDLVA 439

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R    D +TY++LI   CK   + ++  + DE+   GC P++ T  +V+  L    ++  
Sbjct: 440 RGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDD 499

Query: 461 AAELLL 466
           A  L++
Sbjct: 500 AWSLVV 505



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 196/373 (52%), Gaps = 15/373 (4%)

Query: 97  RVHRPLDAMRVFDKMKEF-GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           R  RP  A++ FD   E  G +    SY  +L ILV+        + Y+ +   G  P +
Sbjct: 3   RSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNL 62

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            +  +LI+  CK    M  A +  R +      PD Y +  LI+GL + G   +A +LF+
Sbjct: 63  VTFKILIRGNCKAGQAM-RALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFE 121

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE--PNVFTYSSLMDGLCK 273
            ME+    P +VTY ++I+GLC+S ++E+A  L EEM  KG +  P++ TY++L++   +
Sbjct: 122 NMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYR 181

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                +A    + M +    P+++T + L++G+CK+G ++EA+EILD MKL G  PD   
Sbjct: 182 ASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVIT 241

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAF 392
           Y  II   C  GK  EAA  L  M     +P+ +T+       NT++ G CK     RA 
Sbjct: 242 YNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTF-------NTLLDGFCKAGMLPRAL 291

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +V   M   +I  D +TY+ L+   C+ G +  +  +++E+V  G +PD   +++++  L
Sbjct: 292 EVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGL 351

Query: 453 WDRRKMRQAAELL 465
               ++ +A +L+
Sbjct: 352 CKSGEIEEAHKLV 364



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 1/258 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D   ++ ++  L  + +   A  L+  ++   C     ++ S+  GY R      A
Sbjct: 336 GYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKA 395

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +M      P   +Y  VL  L+++  +  A      +   G  P V + N LI  
Sbjct: 396 REILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDG 455

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +   +A   +  EM +RGC P+  T G+++ GLCR+G++ +A  L  EM  K  +P
Sbjct: 456 LCKANRVREAC-DLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAP 514

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV YTSLI+GLC+S  +++A  + + MR +GV  + F Y  L+  +  GG  ++AM + 
Sbjct: 515 NVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMY 574

Query: 285 QMMISKRHRPNIVTYSTL 302
             M+++   P+  T  TL
Sbjct: 575 DEMVARGFLPDGSTSKTL 592


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 230/463 (49%), Gaps = 31/463 (6%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE 79
           QL+ A  D    L  F  +  EY   +  + +  S ++  L ++ ++      LD   K 
Sbjct: 50  QLLNAGVDSELVLRFFKWSQKEYRLSYGLEPT--SKVLHFLANSKRYSKVRSFLDSFVKN 107

Query: 80  KCDITEDIFLSICRGYGRVH--------------RPLD---AMRVFDKMKEFGCEPTPKS 122
           +      +F S+    GR                + L+   A   F + K++G + +  S
Sbjct: 108 EKHTVSSVFHSLLLDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTS 167

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
              +L+ LV+EN++      Y+ M +  I   + + N+ I  LC+ +G ++ A     +M
Sbjct: 168 CNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCR-AGKLNKAEDAIEDM 226

Query: 183 PNRGCTPDSYTYGTLINGLCR---LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
              G +P+  TY TL++G C+    GK+Y+A+   KEM      P  VT+ +LI+G C+ 
Sbjct: 227 KAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKD 286

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
           ++V  A + FEEM+ +G++PN+ TY+SL++GLC  G   +A++L   M+    +PNIVTY
Sbjct: 287 ENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTY 346

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + L+NG CK+  ++EA ++ D +  Q L P+   +  +I  +C  G  +E  +    M+ 
Sbjct: 347 NALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLD 406

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            GI PN       +  +N ++ GLC K D   A ++   M N+ +  D +TY+ LI   C
Sbjct: 407 EGILPN-------VSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLC 459

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           K      + ++++E+   G  P+  T++ +M       K++ A
Sbjct: 460 KNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAA 502



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 217/419 (51%), Gaps = 20/419 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI---TEDIFLS-ICRGYGRVHR 100
           GF+   ++ + ++S LV  N+    E +   + K +      T +IF++ +CR  G++++
Sbjct: 160 GFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRA-GKLNK 218

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI---GIQPCVAS 157
             DA+   + MK +G  P   +Y T++    +       ++    M+E+    I P   +
Sbjct: 219 AEDAI---EDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVT 275

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N LI   CK+   + AA K F EM  +G  P+  TY +LINGLC  GK+ EA +L+ +M
Sbjct: 276 FNTLIDGFCKDE-NVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKM 334

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P +VTY +LING C+ K ++EA ++F+++  + + PNV T+++++D  CK G  
Sbjct: 335 VGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMM 394

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +   L   M+ +   PN+ TY+ L+ GLC++  LQ A E+L+ M+ +GLK D   Y  +
Sbjct: 395 EEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNIL 454

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYL 396
           I   C   K + A   L+EM   G+ PN +T+       NT++ G C +     A  V  
Sbjct: 455 IDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTY-------NTLMDGYCMEGKLKAALNVRT 507

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            M       + +TY+ LI  +CK   +  +  +++E++  G  P+  T+  V   + ++
Sbjct: 508 RMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLEK 566



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 201/393 (51%), Gaps = 23/393 (5%)

Query: 88  FLSICRGYGRVHRPLDAM---------RVFDKMKEFGCEPTPKSYITVLAIL--VEENQL 136
           FL+  + Y +V   LD+           VF  +   G  P   + I  + +L  V+  +L
Sbjct: 87  FLANSKRYSKVRSFLDSFVKNEKHTVSSVFHSLLLDGGRPGATALIIDMLVLAYVKNLEL 146

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
             A+  +   ++ G +  + S N L+ AL K +   D  + +++EM  R    +  T+  
Sbjct: 147 HCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEY-VYKEMIKRRIHTNLNTFNI 205

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS---VEEAMRLFEEMR 253
            INGLCR GK+ +A++  ++M+    SP VVTY +L++G C+  S   + +A    +EM 
Sbjct: 206 FINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEML 265

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           +  + PN  T+++L+DG CK    + A +  + M  +  +PNIVTY++L+NGLC  GKL+
Sbjct: 266 ANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLE 325

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA+++ D+M   GLKP+   Y  +I+ FC     +EA    D++    + PN +T+    
Sbjct: 326 EAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITF---- 381

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              NT++   CK       F +  SM +  I  +  TY+ LI   C+K D+  +  +++E
Sbjct: 382 ---NTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNE 438

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +   G   D  T++ ++  L    K R A +LL
Sbjct: 439 MENKGLKGDVVTYNILIDGLCKNDKSRNAEKLL 471



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 188/339 (55%), Gaps = 15/339 (4%)

Query: 150 GIQPCVASL--NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           G +P   +L  ++L+ A  KN   +  A++ F    + G      +   L++ L +  KI
Sbjct: 123 GGRPGATALIIDMLVLAYVKNL-ELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKI 181

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            + + ++KEM  +     + T+   INGLC++  + +A    E+M++ G+ PNV TY++L
Sbjct: 182 GDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTL 241

Query: 268 MDGLCKGGCSS---QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +DG CK G +    +A   ++ M++ +  PN VT++TL++G CK+  +  A +  + M+ 
Sbjct: 242 VDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQK 301

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           QGLKP+   Y  +I+  C+ GK +EA +  D+MV  G+ PN +T+       N ++ G C
Sbjct: 302 QGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTY-------NALINGFC 354

Query: 385 KTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K    + A +V+  +  + +  + +T++++I  +CK+G + +   +   ++ +G LP+  
Sbjct: 355 KKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVS 414

Query: 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           T++ ++  L  R++  QAA+ LL E+ NK ++ +V   N
Sbjct: 415 TYNCLIAGLC-RKQDLQAAKELLNEMENKGLKGDVVTYN 452


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 200/395 (50%), Gaps = 33/395 (8%)

Query: 103 DAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           +A RVF+KM KE  C P   +Y  ++  L E  +L+ AF+  + M E G QP   +  VL
Sbjct: 224 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 283

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IKA C + G  D A K+  EM  + C P+ +TY  LI+ LCR GKI EA  +F++M    
Sbjct: 284 IKAKC-DIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 342

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P ++T+ +LING C+   V  A +L   M     +PN+ TY+ LM+GLC+   S +A 
Sbjct: 343 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 402

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ ++     P+ VTY+ L++G CKEG+L  A  I + M   GL+PD   +  +I   
Sbjct: 403 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGL 462

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH-------------NTVVQGLCKTDP 388
           C +G+ ++A   L  MV  GI+ + +T++  I  H               +V+  C T  
Sbjct: 463 CKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTA 522

Query: 389 NRAFQVYLSMRNRSISVDS-----------------LTYSSLITCFCKKGDIHKSARIVD 431
           +  F  +L    +   ++                  +T++ LI   C+ G+   S ++++
Sbjct: 523 H-TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 581

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +   GC P+  T++ ++  L +  ++ +A  +L 
Sbjct: 582 RMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILF 616



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 222/482 (46%), Gaps = 47/482 (9%)

Query: 7   FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF 66
           F   T + ++ VL   R + D+ +A  +F+  + E     R ++ T+S++I  L  A + 
Sbjct: 202 FGLDTHVCTSLVLANCRRD-DLGEAFRVFEKMSKE--ENCRPNSVTYSILIHGLCEAGRL 258

Query: 67  RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
             A  L   + ++ C  +   +  + +    +     AM++ D+M    C P   +Y  +
Sbjct: 259 EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 318

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           +  L  E +++ A   +R M + G+ P + + N LI   CK  G + +AF++   M    
Sbjct: 319 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK-EGWVVSAFQLLSVMEKGN 377

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           C P+  TY  L+ GLCR+ K Y+A  L + +      P  VTY  L++G C+   +  A 
Sbjct: 378 CKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAF 437

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            +F  M S G+EP+ FT+++L+DGLCK G   QA  +L  M+ K    + VT++ L++G 
Sbjct: 438 NIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGH 497

Query: 307 CKEGK-----------------------------------LQEAVEILDRMKLQGLKPDA 331
           CK GK                                   L EA  +L +M   GL P  
Sbjct: 498 CKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSV 557

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNR 390
             +  +I   C  G+   +   L+ M   G +PN  T+++       ++ GLC       
Sbjct: 558 VTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI-------IINGLCNNGRVEE 610

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A  +  SM +  +S +  TY+ L+    K G + ++ +IV  +V +GC P+   +SA+++
Sbjct: 611 AETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLS 670

Query: 451 AL 452
             
Sbjct: 671 GF 672



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 190/406 (46%), Gaps = 43/406 (10%)

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M   D M E G   +   Y T+L  L + N   +AF  YR M   G          ++ A
Sbjct: 121 MGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNA 180

Query: 165 LCKNSGTMDA----------------------------------AFKIFREMPNR-GCTP 189
           LCKN     A                                  AF++F +M     C P
Sbjct: 181 LCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRP 240

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +S TY  LI+GLC  G++ EA +L +EM  K C P+  TYT LI   C     ++AM++ 
Sbjct: 241 NSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKML 300

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM +K   PNV TY+ L+D LC+ G   +A  + + M+     P I+T++ L+NG CKE
Sbjct: 301 DEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKE 360

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G +  A ++L  M+    KP+   Y +++   C + K  +A   L  +V  G+ P+R+T+
Sbjct: 361 GWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTY 420

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N +V G CK    N AF ++ SM +  +  D  T+++LI   CK G + ++  
Sbjct: 421 -------NILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 473

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           I+  +V  G   DE T++A++       K +    L    + N+C+
Sbjct: 474 ILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 519



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 158/394 (40%), Gaps = 59/394 (14%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  +N A  IF+S  +    G   D  TF+ +I  L    +   A  +L  + K+   + 
Sbjct: 430 EGQLNMAFNIFNSMNSA---GLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 486

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY--------------------- 123
           E  F ++  G+ ++ +  D   +F+ M E  C  T  ++                     
Sbjct: 487 EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLG 546

Query: 124 ----------ITVLAILVEEN----QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
                     +    IL+E +    +  L+ +    M++ G  P V +  ++I  LC N+
Sbjct: 547 KMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLC-NN 605

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G ++ A  I   M + G +P+ +TY  L+    + G++  A ++   M    C P    Y
Sbjct: 606 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 665

Query: 230 TSLINGLCQSKSVEEAMRLFE----EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           ++L++G   S +   A  L      + RS   E N        D  C      + M++  
Sbjct: 666 SALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN--------DNNCLSSHVFRLMDVDH 717

Query: 286 MM-----ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +     I K   P    Y+ L+ GLCKEG++ EA ++   M   GL PD  +   II  
Sbjct: 718 ALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEH 776

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLT--WSLH 372
           +C   KY     F+  ++     P+  +  W +H
Sbjct: 777 YCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIH 810



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 126/275 (45%), Gaps = 39/275 (14%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G+ R      ++++ ++MK+ GC P   +Y  ++  L    +++ A      M   G+ P
Sbjct: 566 GHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSP 625

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
              +  VL+KA  K +G +D AF+I   M   GC P+S+ Y  L++G         A+ L
Sbjct: 626 NHFTYAVLVKAHVK-AGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARAL 684

Query: 214 -------------------------FKEM----------ETKACS-PTVVTYTSLINGLC 237
                                    F+ M          E K C  PT   Y  L+ GLC
Sbjct: 685 SSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLC 744

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +   + EA +L ++M   G+ P+    SS+++  CK       +E +++++  +  P+  
Sbjct: 745 KEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFA 803

Query: 298 TYSTLLNGLCKEGKLQEAVEIL-DRMKLQGLKPDA 331
           +Y  +++GL  EG++QEA +++ D ++  G++ + 
Sbjct: 804 SYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEV 838



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
            V + M   + M   G   +   YS+L+  L K      A  + + M+++      + Y 
Sbjct: 116 GVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYR 175

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL- 359
           T++N LCK G +Q A     ++   G   D  +   ++   C      EA    ++M   
Sbjct: 176 TVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKE 235

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
               PN +T+S+       ++ GLC+      AFQ+   M  +     + TY+ LI   C
Sbjct: 236 ENCRPNSVTYSI-------LIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKC 288

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             G   K+ +++DE+    C+P+  T++ ++  L    K+ +A
Sbjct: 289 DIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEA 331


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 208/422 (49%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I           A  +   +  + C   E  + ++  G+    R  +A
Sbjct: 234 GLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEA 293

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++F +M E  C PT ++Y  ++  L +  +   A   ++ M E   QP V +  VLI +
Sbjct: 294 LKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICS 353

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC++S   D A KI   M  +G  P   TY  LI+G C+ G    A E+   ME+  CSP
Sbjct: 354 LCEDS-NFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSP 412

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  LI G C+ K++ +AM L  +M  + ++PNV TY+ L+ G CK G    A +LL
Sbjct: 413 NARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLL 472

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M      P+  TYS  ++ LCK G ++EA  + + +K +G+K +  +Y  +I  +C +
Sbjct: 473 SLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKV 532

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSI 403
           GK  +    LD+M+  G  PN +T+       N+++ G CK    +  ++ +  M  R I
Sbjct: 533 GKVSDGRFLLDKMLSAGCVPNSITY-------NSLIDGYCKEKNFKEARLLVDIMIKRDI 585

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
              + TY+ LI    K  +  ++  + D+++  G  PD   ++A + A     +++ A  
Sbjct: 586 EPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEV 645

Query: 464 LL 465
           L+
Sbjct: 646 LI 647



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 195/415 (46%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T + M++          AE  + ++ +    +    + S+  GY R      A  +F  M
Sbjct: 206 TLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSM 265

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC     SY  ++    E  ++  A + +  M E    P V +  V+I ALC+  G 
Sbjct: 266 PNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQ-LGR 324

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A  +F+EM  + C P+ +TY  LI  LC      +AK++   M  K   P+VVTY +
Sbjct: 325 KTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNA 384

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G C+      A+ +   M S    PN  TY+ L+ G C+G    +AM LL  M+ ++
Sbjct: 385 LIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERK 444

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +PN+VTY+ L++G CKEG L  A ++L  M   GL PD   Y   I   C  G  +EA 
Sbjct: 445 LQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEAR 504

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTY 410
           +  + +   GI  N +       I++T++ G CK       +  L  M +     +S+TY
Sbjct: 505 SLFESLKEKGIKANEV-------IYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITY 557

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +SLI  +CK+ +  ++  +VD ++     P   T++ ++  L    +  QA ++ 
Sbjct: 558 NSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMF 612



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 132/523 (25%), Positives = 234/523 (44%), Gaps = 78/523 (14%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I  + +  L     D   AL  F+    ++  GF+H+  +   M++ LV     R AE++
Sbjct: 75  IAPSHISALFALNLDPQTALAFFNWIGQKH--GFKHNVQSHVSMLNILVPNGYLRIAENM 132

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
             R+   K   + +  L +      ++R +DA         F  + T + Y  +L +L  
Sbjct: 133 --RILMIKSTDSSENALFVLEMLRSMNRRVDA---------FKFKLTLRCYNMLLMLLSR 181

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK------------------------- 167
              +      Y  M +  + P + +LN ++   CK                         
Sbjct: 182 FLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFT 241

Query: 168 ---------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
                     +  +DAA  IF  MPN+GC  +  +Y  LI+G C   ++ EA +LF +M 
Sbjct: 242 YTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMH 301

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
              C PTV TYT +I  LCQ     EA+ +F+EM  K  +PNV TY+ L+  LC+     
Sbjct: 302 EDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFD 361

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A ++L  M+ K   P++VTY+ L++G CK+G    A+EIL  M+     P+A  Y ++I
Sbjct: 362 DAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELI 421

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------------------------ 374
             FC      +A + L +M+   + PN +T+++ I                         
Sbjct: 422 LGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLV 481

Query: 375 ----IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                ++  +  LCK      A  ++ S++ + I  + + YS+LI  +CK G +     +
Sbjct: 482 PDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFL 541

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           +D+++  GC+P+  T+++++      +  ++A   LL+++M K
Sbjct: 542 LDKMLSAGCVPNSITYNSLIDGYCKEKNFKEAR--LLVDIMIK 582



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 204/473 (43%), Gaps = 39/473 (8%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W T  T   ++  +       +AL +F   T ++     H   T++++I  L   + F  
Sbjct: 306 WPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVH---TYTVLICSLCEDSNFDD 362

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           A+ +L+ + ++    +   + ++  GY +      A+ +   M+   C P  ++Y  ++ 
Sbjct: 363 AKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELIL 422

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
                  +  A      M E  +QP V + N+LI   CK  G + +A+K+   M   G  
Sbjct: 423 GFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCK-EGDLGSAYKLLSLMNESGLV 481

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD +TY   I+ LC+ G + EA+ LF+ ++ K      V Y++LI+G C+   V +   L
Sbjct: 482 PDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFL 541

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            ++M S G  PN  TY+SL+DG CK     +A  L+ +MI +   P   TY+ L++ L K
Sbjct: 542 LDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLK 601

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           + +  +A ++ D+M   G  PD  +Y   I  +C  G+ ++A   + +M   GI P+ + 
Sbjct: 602 DDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTML 661

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK--------- 419
           ++L I  +            + AF +   M          TYS LI              
Sbjct: 662 YTLFIDAYGRF------GSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSS 715

Query: 420 -----------KGDIHKSARIVD-ELVLD--------GCLPDEGTWSAVMTAL 452
                        D     R VD E  LD        GC P+  T+   +T L
Sbjct: 716 SELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGL 768



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/439 (24%), Positives = 183/439 (41%), Gaps = 38/439 (8%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T+S+ I  L        A  L + + ++     E I+ ++  GY +V +  D
Sbjct: 478 SGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSD 537

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              + DKM   GC P   +Y +++    +E   K A      M +  I+P   +  +LI 
Sbjct: 538 GRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILID 597

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K+    D A  +F +M + G  PD + Y   I+  C  G++ +A+ L  +M  K   
Sbjct: 598 NLLKDD-EFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIM 656

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG--------- 274
           P  + YT  I+   +  S++ A  + + M   G EP+ +TYS L+  L            
Sbjct: 657 PDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSS 716

Query: 275 -------GCSSQ-------------AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
                  G +S               ++L   M      PN  TY   + GLCK G L+ 
Sbjct: 717 ELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEV 776

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A  + D MK +G  P+  +Y  ++ C C +G Y EA  +LD M+     P       H+ 
Sbjct: 777 AHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLP-------HLD 829

Query: 375 IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
               ++ GL  + +  +A +V+ S      + D + +  LI    KKG   K + +   +
Sbjct: 830 SCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIM 889

Query: 434 VLDGCLPDEGTWSAVMTAL 452
              GC     T+S ++   
Sbjct: 890 ETQGCQIHPKTYSMLIEGF 908



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 186/446 (41%), Gaps = 79/446 (17%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           ++ L  CRG   +H+   AM +  KM E   +P   +Y  ++    +E  L  A++    
Sbjct: 419 ELILGFCRG-KNIHK---AMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSL 474

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E G+ P   + +V I  LCK  G ++ A  +F  +  +G   +   Y TLI+G C++G
Sbjct: 475 MNESGLVPDEWTYSVFIDTLCKR-GLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVG 533

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+ + + L  +M +  C P  +TY SLI+G C+ K+ +EA  L + M  + +EP   TY+
Sbjct: 534 KVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYT 593

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE----------- 314
            L+D L K     QA ++   M+S    P++  Y+  ++  C  G+L++           
Sbjct: 594 ILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAK 653

Query: 315 ------------------------AVEILDRMKLQGLKPDAGLYGKII------------ 338
                                   A  IL RM   G +P    Y  +I            
Sbjct: 654 GIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVS 713

Query: 339 ------------------SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
                             +C+  +  Y+   +   +M   G  PN  T+          +
Sbjct: 714 SSSELSDLSSGVASNDFSNCWRRV-DYEFTLDLFGKMAEHGCAPNANTYG-------KFI 765

Query: 381 QGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GLCK      A +++  M+ +  S +   Y+SL+ C C+ G   ++ R +D ++ +  L
Sbjct: 766 TGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHL 825

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           P   +   ++  L+D     +A  + 
Sbjct: 826 PHLDSCKLLLCGLYDEGNDEKAKRVF 851


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 216/434 (49%), Gaps = 21/434 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ ++  L   ++   A +L  ++ +  C      F ++  G  R  R ++A
Sbjct: 144 GLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEA 203

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +PT  +Y T++  + ++     A    R M E+  I P V   + +I 
Sbjct: 204 VALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK+    DA   +F EM  +G  PD +TY ++I G C  G+  +A++L +EM  +  S
Sbjct: 264 SLCKDGRHSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS 322

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY +LIN   +     EA  L++EM  +G+ PN  TYSS++DG CK      A  +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M +K   PN++T++TL++G C   ++ + +E+L  M   GL  D   Y  +I  F  
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT----DPNRAFQVYLSMR 399
           +G    A + L EM+  G+ P+ +T        +T++ GLC      D    F+V    +
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTC-------DTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 400 N--------RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
                      +  D  TY+ LI+    +G   ++  + +E+   G +PD  T+S+++  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 452 LWDRRKMRQAAELL 465
           L  + ++ +A ++ 
Sbjct: 556 LCKQSRLDEATQMF 569



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 208/419 (49%), Gaps = 41/419 (9%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+ +I     +  R  DA  +F +M+E G  P   +Y +++       +   A +  + M
Sbjct: 257 IYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM 316

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E  I P V + N LI A  K  G    A +++ EM  RG  P++ TY ++I+G C+  +
Sbjct: 317 LERKISPDVVTYNALINAFVKE-GKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A+ +F  M TK CSP ++T+ +LI+G C +K +++ M L  EM   G+  +  TY++
Sbjct: 376 LDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK--- 323
           L+ G    G  + A++LLQ MIS    P+IVT  TLL+GLC  GKL++A+E+   M+   
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 324 --------LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR- 374
                     G++PD   Y  +IS   + GK+ EA    +EM   GI P+ +T+S  I  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 375 ---------------------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVD 406
                                         T++ G CK    +   +++  M  R I  +
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++TY +LI  F K G+I+ +  I  E++  G  PD  T   ++T LW + ++++A  +L
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAML 674



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D    ++++M  +    D Y++  LI   C   K+  A   F ++      P VVT+T+L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL 155

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           ++GLC    V EA+ LF +M      PNV T+++LM+GLC+ G   +A+ LL  M+    
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-LQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           +P  +TY T+++G+CK+G    A+ +L +M+ +  + P+  +Y  II   C  G++ +A 
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           N   EM   GI P+  T+       N+++ G C +   + A Q+   M  R IS D +TY
Sbjct: 276 NLFTEMQEKGIFPDLFTY-------NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           ++LI  F K+G   ++  + DE++  G +P+  T+S+++     + ++  A  +  L   
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388

Query: 471 NKC 473
             C
Sbjct: 389 KGC 391



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 12/331 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I+  V   +F  AE+L D +           + S+  G+ + +R   A  +F
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M   GC P   ++ T++       ++         M E G+     + N LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF-YL 442

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET--------- 219
            G ++AA  + +EM + G  PD  T  TL++GLC  GK+ +A E+FK M+          
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502

Query: 220 --KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P V TY  LI+GL       EA  L+EEM  +G+ P+  TYSS++DGLCK    
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A ++   M SK   PN+VT++TL+NG CK G++ + +E+   M  +G+  +A  Y  +
Sbjct: 563 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           I  F  +G    A +   EM+  G+ P+ +T
Sbjct: 623 ICGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 149/295 (50%), Gaps = 9/295 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L+  + R+ +      L+++ME K     + ++  
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI   C    +  A+  F ++   G+ P+V T+++L+ GLC     S+A+ L   M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RPN+VT++TL+NGLC+EG++ EAV +LDRM   GL+P    YG I+   C  G    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSISVDSLT 409
           N L +M  +  I PN       + I++ ++  LCK   +   Q ++  M+ + I  D  T
Sbjct: 240 NLLRKMEEVSHIIPN-------VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+S+I  FC  G    + +++ E++     PD  T++A++ A     K  +A EL
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 152/284 (53%), Gaps = 12/284 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I     A +     +LL  + +         + ++  G+  V     A+ +  +M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GIQPCVASLNV 160
              G  P   +  T+L  L +  +LK A   ++ M++            G++P V + N+
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  L  N G    A +++ EMP+RG  PD+ TY ++I+GLC+  ++ EA ++F  M +K
Sbjct: 517 LISGLI-NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 575

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
           + SP VVT+T+LING C++  V++ + LF EM  +G+  N  TY +L+ G  K G  + A
Sbjct: 576 SFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGA 635

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +++ Q MIS    P+ +T   +L GL  + +L+ AV +L+++++
Sbjct: 636 LDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 36/210 (17%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++++IS L++  +F  AE+L                               
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEEL------------------------------- 533

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               +++M   G  P   +Y +++  L ++++L  A + +  M      P V +   LI 
Sbjct: 534 ----YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 589

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK +G +D   ++F EM  RG   ++ TY TLI G  ++G I  A ++F+EM +    
Sbjct: 590 GYCK-AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           P  +T  +++ GL   + ++ A+ + E+++
Sbjct: 649 PDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 206/407 (50%), Gaps = 10/407 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D S  +  I  LV  N+   A   L+R+   + +     +  + +GY  +HR  DA
Sbjct: 199 GIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDA 258

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLK-LAFRFYRHMREIGIQPCVASLNVLIK 163
           M +  +M   GC P   SY TV+  L +E ++K +     + +++  + P   + N  + 
Sbjct: 259 MELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVH 318

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K+ G  D A +  RE   R    D   Y  +++  CR G++ +AKE+  EM +K C 
Sbjct: 319 MLSKH-GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCI 377

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTYTS+INGLCQ + V++A ++  +M   G +PN  +Y++L++GLCK G S +A E+
Sbjct: 378 PDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREM 437

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           + M       PN +TYS L++G  +EGK  EA +++  M  +G  P       +I   C 
Sbjct: 438 MNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQ 497

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
             K  EA  F+++ +  G   N + ++       TV+ G C K D   A  +   M   +
Sbjct: 498 EEKVDEAKRFMEQCLNNGCAVNVVNFT-------TVIHGFCQKDDLEAALSLLDDMYLSN 550

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
              D +TY+++I    KKG I ++ ++  +++  G +P   T+  V+
Sbjct: 551 KHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVI 597



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 235/487 (48%), Gaps = 47/487 (9%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           QV  +++ + D   AL  F  A  ++   +RHD   +  M+  L      + A+ +L  +
Sbjct: 103 QVCAVLQLQTDERVALRFFYWADRQWR--YRHDPIVYYAMLEILSKTKLCQGAKRVLRLM 160

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
            K + +   + F  +   Y R  +  +AMRV   M++ G EP      T + +LV  N+L
Sbjct: 161 AKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRL 220

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
             A RF   M+ + I+P V + N LIK  C +   ++ A ++  EMP +GC+PD  +Y T
Sbjct: 221 DKAVRFLERMQIVEIEPNVITYNCLIKGYC-DLHRLEDAMELIAEMPFKGCSPDKISYYT 279

Query: 197 LINGLCRLGKIYEAK------------------------------------ELFKEMETK 220
           ++  LC+  +I E +                                    E  +E E +
Sbjct: 280 VMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEER 339

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                 V Y+++++  C+   +++A  +  EM SKG  P+V TY+S+++GLC+     QA
Sbjct: 340 RFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQA 399

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ++L+ M     +PN V+Y+ LLNGLCK G   EA E+++  +     P+A  Y  ++  
Sbjct: 400 KKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHG 459

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           F   GK  EA + + EM+  G  P  +         N ++Q LC+ +  + A +      
Sbjct: 460 FRREGKSSEACDLVREMIKKGFFPTPVEI-------NLLIQSLCQEEKVDEAKRFMEQCL 512

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N   +V+ + ++++I  FC+K D+  +  ++D++ L    PD  T++ ++ AL  + ++ 
Sbjct: 513 NNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIE 572

Query: 460 QAAELLL 466
           +A +L +
Sbjct: 573 EATKLAM 579



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 214/461 (46%), Gaps = 23/461 (4%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           KI+   V+  +  EK + +  ++ +    +  +    D  T++  +  L        A +
Sbjct: 274 KISYYTVMGFLCKEKRIKEVRLLMEKMLKD--SNLLPDQVTYNTFVHMLSKHGHGDEALE 331

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L    + +  + +  + +I   + R  R   A  + ++M   GC P   +Y +V+  L 
Sbjct: 332 FLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLC 391

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG----C 187
           +E ++  A +  R M + G +P   S   L+  LCKN  +++A     REM N       
Sbjct: 392 QERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEA-----REMMNMSEEDWW 446

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            P++ TY  L++G  R GK  EA +L +EM  K   PT V    LI  LCQ + V+EA R
Sbjct: 447 IPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKR 506

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ-MMISKRHRPNIVTYSTLLNGL 306
             E+  + G   NV  +++++ G C+      A+ LL  M +S +H P++VTY+T+++ L
Sbjct: 507 FMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKH-PDVVTYTTIIDAL 565

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
            K+G+++EA ++  +M   GL P    Y  +I  +C +G+ ++    L++M         
Sbjct: 566 GKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKM--------- 616

Query: 367 LTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           L+       +N V++ LC   +  +A+++   +   +  +D+ T   LI  +  KG    
Sbjct: 617 LSRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGIPLM 676

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           S  +   +     +PD      V   L    K  +A +L+L
Sbjct: 677 SYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLIL 717



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 161/355 (45%), Gaps = 9/355 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+  +  E+ V++A  +       Y +G + +  +++ +++ L        A ++
Sbjct: 381 VTYTSVINGLCQERKVDQAKKMLRQM---YKHGCKPNTVSYTALLNGLCKNGNSLEAREM 437

Query: 73  LDRVNKEKCDITEDIFLSIC-RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           ++ +++E   I   I  S+   G+ R  +  +A  +  +M + G  PTP     ++  L 
Sbjct: 438 MN-MSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLC 496

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +E ++  A RF       G    V +   +I   C+    ++AA  +  +M      PD 
Sbjct: 497 QEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKD-DLEAALSLLDDMYLSNKHPDV 555

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY T+I+ L + G+I EA +L  +M      PT VTY ++I+  C+   VE+ ++L E+
Sbjct: 556 VTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEK 615

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M S+  +     Y+ +++ LC  G   QA +LL  ++    + +  T   L+     +G 
Sbjct: 616 MLSR--QECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGI 673

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV-LGGITPN 365
              +  +  RM  + L PD  L  K+       GK +EA   +   V  G I+P 
Sbjct: 674 PLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVERGRISPQ 728


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 187/335 (55%), Gaps = 9/335 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM++ D+M   GC+P   +Y  ++  + +E +L  A +F   M   G QP V + N++++
Sbjct: 35  AMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILR 94

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           ++C     MDA  K+  EM  +GC+P   T+  LIN LCR G +  A ++ ++M T  C+
Sbjct: 95  SMCSTGRWMDAE-KLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCT 153

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  ++Y  L++G C+ K ++ A++  E M S+G  P++ TY++++  LCK G    A+EL
Sbjct: 154 PNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVEL 213

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  + SK   P ++TY+T+++GL K GK  +AVE+L  M+ +GLKPD   Y  +I+    
Sbjct: 214 LNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSR 273

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            GK +EA  F  ++   G+ PN  T+       N+++ GLCK    +RA      M ++ 
Sbjct: 274 EGKVEEAIKFFHDVEGFGVKPNAFTY-------NSIMFGLCKAQQTDRAIDFLAYMISKG 326

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
                ++Y+ LI     +G   ++  +++EL   G
Sbjct: 327 CKPTEVSYTILIEGIANEGLAKEALELLNELCSRG 361



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 190/362 (52%), Gaps = 9/362 (2%)

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M V D+  E  C P   +Y  ++     E+ +  A +    M   G +P V + NVL+  
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           +CK  G +D A K    MP+ G  P+  T+  ++  +C  G+  +A++L  EM  K CSP
Sbjct: 61  MCK-EGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSP 119

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           +VVT+  LIN LC+   +  A+ + E+M + G  PN  +Y+ L+ G CK     +A++ L
Sbjct: 120 SVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYL 179

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           ++M+S+   P+IVTY+T+L  LCK+GK+  AVE+L+++  +G  P    Y  +I     +
Sbjct: 180 EIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKV 239

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           GK  +A   L EM   G+ P+ +T+S       +++ GL +      A + +  +    +
Sbjct: 240 GKTDQAVELLHEMRGKGLKPDVITYS-------SLIAGLSREGKVEEAIKFFHDVEGFGV 292

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             ++ TY+S++   CK     ++   +  ++  GC P E +++ ++  + +    ++A E
Sbjct: 293 KPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALE 352

Query: 464 LL 465
           LL
Sbjct: 353 LL 354



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 177/337 (52%), Gaps = 3/337 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++++I    + +    A  LLD +    C      +  +  G  +  R  +A++  
Sbjct: 15  DVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFL 74

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M  +G +P   ++  +L  +    +   A +    M   G  P V + N+LI  LC+ 
Sbjct: 75  NSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRK 134

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A  I  +MP  GCTP+S +Y  L++G C+  K+  A +  + M ++ C P +VT
Sbjct: 135 -GLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVT 193

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +++  LC+   V+ A+ L  ++ SKG  P + TY++++DGL K G + QA+ELL  M 
Sbjct: 194 YNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMR 253

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K  +P+++TYS+L+ GL +EGK++EA++    ++  G+KP+A  Y  I+   C   +  
Sbjct: 254 GKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTD 313

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            A +FL  M+  G  P  ++++  I I     +GL K
Sbjct: 314 RAIDFLAYMISKGCKPTEVSYT--ILIEGIANEGLAK 348



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 176/327 (53%), Gaps = 9/327 (2%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V +  +LI+A C  SG +  A K+  EM +RGC PD  TY  L+NG+C+ G++ EA +
Sbjct: 14  PDVITYTILIEATCAESG-VGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIK 72

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
               M +    P V+T+  ++  +C +    +A +L  EM  KG  P+V T++ L++ LC
Sbjct: 73  FLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLC 132

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           + G   +A+++L+ M +    PN ++Y+ LL+G CKE K+  A++ L+ M  +G  PD  
Sbjct: 133 RKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIV 192

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRA 391
            Y  +++  C  GK   A   L+++   G +P  +T+       NTV+ GL K    ++A
Sbjct: 193 TYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITY-------NTVIDGLSKVGKTDQA 245

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            ++   MR + +  D +TYSSLI    ++G + ++ +   ++   G  P+  T++++M  
Sbjct: 246 VELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFG 305

Query: 452 LWDRRKMRQAAELLLLELMNKCVEAEV 478
           L   ++  +A + L   +   C   EV
Sbjct: 306 LCKAQQTDRAIDFLAYMISKGCKPTEV 332



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 170/287 (59%), Gaps = 9/287 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRGYGRVHR 100
           G + +  T ++++  + S  ++  AE LL  + ++ C    +T +I ++ +CR  G + R
Sbjct: 81  GSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR-KGLLGR 139

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            +D   + +KM   GC P   SY  +L    +E ++  A ++   M   G  P + + N 
Sbjct: 140 AID---ILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNT 196

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++ ALCK+ G +DAA ++  ++ ++GC+P   TY T+I+GL ++GK  +A EL  EM  K
Sbjct: 197 MLTALCKD-GKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGK 255

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P V+TY+SLI GL +   VEEA++ F ++   GV+PN FTY+S+M GLCK   + +A
Sbjct: 256 GLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRA 315

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++ L  MISK  +P  V+Y+ L+ G+  EG  +EA+E+L+ +  +G+
Sbjct: 316 IDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGV 362



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 180/366 (49%), Gaps = 10/366 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++   AE  V +A+ + D   +    G + D  T++++++ +    +   A   
Sbjct: 17  ITYTILIEATCAESGVGQAMKLLDEMGSR---GCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 73  LDRV---NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           L+ +     +   IT +I L   R      R +DA ++  +M   GC P+  ++  ++  
Sbjct: 74  LNSMPSYGSQPNVITHNIIL---RSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINF 130

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L  +  L  A      M   G  P   S N L+   CK    MD A +    M +RGC P
Sbjct: 131 LCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEK-KMDRAIQYLEIMVSRGCYP 189

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY T++  LC+ GK+  A EL  ++ +K CSP ++TY ++I+GL +    ++A+ L 
Sbjct: 190 DIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELL 249

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            EMR KG++P+V TYSSL+ GL + G   +A++    +     +PN  TY++++ GLCK 
Sbjct: 250 HEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKA 309

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
            +   A++ L  M  +G KP    Y  +I    + G  +EA   L+E+   G+       
Sbjct: 310 QQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAE 369

Query: 370 SLHIRI 375
            + +R+
Sbjct: 370 QVVVRL 375


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 199/371 (53%), Gaps = 9/371 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+ +  +++ +I    S      A  +LD +  +  +     + S+  G  +  R  +A
Sbjct: 257 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEA 316

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FDKM E G  P   +Y T++     +  L+ AF +   M + GI P V++ N+L+ A
Sbjct: 317 SGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHA 376

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L    G M  A  + +EM  +G  PD+ TY  LING  R G   +A +L  EM +K   P
Sbjct: 377 LFM-EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEP 435

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T VTYTSLI  L +   ++EA  LFE++  +GV P+V  +++++DG C  G   +A  LL
Sbjct: 436 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLL 495

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P+ VT++TL+ G C+EGK++EA  +LD MK +G+KPD   Y  +IS +   
Sbjct: 496 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRR 555

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           G  ++A    DEM+  G  P  LT+       N +++ LCK  + + A ++   M N+ I
Sbjct: 556 GDIKDAFRVRDEMLSIGFNPTLLTY-------NALIKCLCKNQEGDLAEELLKEMVNKGI 608

Query: 404 SVDSLTYSSLI 414
           S D  TY SLI
Sbjct: 609 SPDDSTYLSLI 619



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 208/418 (49%), Gaps = 13/418 (3%)

Query: 42  YANGFRHDNS----TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97
           YA  FR   S    TF++M++ L    + + A + +  +           + +I  GY  
Sbjct: 215 YAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSS 274

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
                 A R+ D M+  G EP   +Y ++++ + +E +L+ A   +  M EIG+ P   +
Sbjct: 275 RGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVT 334

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N LI   C N G ++ AF    EM  +G  P   TY  L++ L   G++ EA ++ KEM
Sbjct: 335 YNTLIDGYC-NKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 393

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
             K   P  +TY  LING  +  + ++A  L  EM SKG+EP   TY+SL+  L +    
Sbjct: 394 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 453

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A +L + ++ +   P+++ ++ +++G C  G ++ A  +L  M  + + PD   +  +
Sbjct: 454 KEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 513

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           +   C  GK +EA   LDEM   GI P+ +++       NT++ G  +  D   AF+V  
Sbjct: 514 MQGRCREGKVEEARMLLDEMKRRGIKPDHISY-------NTLISGYGRRGDIKDAFRVRD 566

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            M +   +   LTY++LI C CK  +   +  ++ E+V  G  PD+ T+ +++  + +
Sbjct: 567 EMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 624



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 223/468 (47%), Gaps = 81/468 (17%)

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
           K  I  D+ + +C     + R  +A + F  MKE G  P  ++   +L++ ++ N++++A
Sbjct: 155 KSSIVFDLLVRVC---CELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMA 211

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCK-------------------------------- 167
           +  Y  M  + I   V + N+++  LCK                                
Sbjct: 212 WVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHG 271

Query: 168 --NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
             + G ++ A +I   M  +G  PDSYTYG+LI+G+C+ G++ EA  LF +M      P 
Sbjct: 272 YSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPN 331

Query: 226 VVTYTSLINGLCQSKSVE-----------------------------------EAMRLFE 250
            VTY +LI+G C    +E                                   EA  + +
Sbjct: 332 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 391

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EMR KG+ P+  TY+ L++G  + G + +A +L   M+SK   P  VTY++L+  L +  
Sbjct: 392 EMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRN 451

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +++EA ++ +++  QG+ PD  ++  ++   C  G  + A   L EM    + P+ +T+ 
Sbjct: 452 RMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTF- 510

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 NT++QG C+       ++ L  M+ R I  D ++Y++LI+ + ++GDI  + R+
Sbjct: 511 ------NTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV 564

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
            DE++  G  P   T++A++  L  + +    AE LL E++NK +  +
Sbjct: 565 RDEMLSIGFNPTLLTYNALIKCLC-KNQEGDLAEELLKEMVNKGISPD 611



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 4/199 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T   ++ ++     + +A  +F+    +   G   D   F+ M+    +      A 
Sbjct: 436 THVTYTSLIYVLSRRNRMKEADDLFEKILDQ---GVSPDVIMFNAMVDGHCANGNVERAF 492

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL  ++++     E  F ++ +G  R  +  +A  + D+MK  G +P   SY T+++  
Sbjct: 493 MLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGY 552

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
                +K AFR    M  IG  P + + N LIK LCKN    D A ++ +EM N+G +PD
Sbjct: 553 GRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEG-DLAEELLKEMVNKGISPD 611

Query: 191 SYTYGTLINGLCRLGKIYE 209
             TY +LI G+  +  + E
Sbjct: 612 DSTYLSLIEGMGNVDTLVE 630


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 208/419 (49%), Gaps = 41/419 (9%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+ +I     +  R  DA  +F +M+E G  P   +Y +++       +   A +  + M
Sbjct: 257 IYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM 316

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E  I P V + N LI A  K  G    A +++ EM  RG  P++ TY ++I+G C+  +
Sbjct: 317 LERKISPDVVTYNALINAFVKE-GKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A+ +F  M TK CSP ++T+ +LI+G C +K +++ M L  EM   G+  +  TY++
Sbjct: 376 LDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK--- 323
           L+ G    G  + A++LLQ MIS    P+IVT  TLL+GLC  GKL++A+E+   M+   
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 324 --------LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR- 374
                     G++PD   Y  +IS   + GK+ EA    +EM   GI P+ +T+S  I  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 375 ---------------------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVD 406
                                         T++ G CK    +   +++  M  R I  +
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++TY +LI  F K G+I+ +  I  E++  G  PD  T   ++T LW + ++++A  +L
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAML 674



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 218/434 (50%), Gaps = 21/434 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ ++  L   ++   A +L  ++ +  C      F ++  G  R  R ++A
Sbjct: 144 GLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEA 203

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +PT  +Y T++  + ++     A    R M E+  I P V   + +I 
Sbjct: 204 VALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK+    DA   +F EM  +G  PD +TY ++I G C  G+  +A++L +EM  +  S
Sbjct: 264 SLCKDGRHSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS 322

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY +LIN   +     EA  L++EM  +G+ PN  TYSS++DG CK      A  +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M +K   PN++T++TL++G C   ++ + +E+L  M   GL  D   Y  +I  F  
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRN-- 400
           +G    A + L EM+  G+ P+ +T        +T++ GLC     + A +++  M+   
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTC-------DTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 401 ---------RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
                      +  D  TY+ LI+    +G   ++  + +E+   G +PD  T+S+++  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 452 LWDRRKMRQAAELL 465
           L  + ++ +A ++ 
Sbjct: 556 LCKQSRLDEATQMF 569



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 192/406 (47%), Gaps = 45/406 (11%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           R+ RP   + ++ KM+         S+  ++      ++L  A   +  + ++G+ P V 
Sbjct: 91  RMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVV 150

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N L+  LC     +  A  +F +M    C P+  T+ TL+NGLCR G+I EA  L   
Sbjct: 151 TFNTLLHGLCVED-RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDR 209

Query: 217 METKACSPTVVTYTSLINGLCQS----------KSVEE---------------------- 244
           M      PT +TY ++++G+C+           + +EE                      
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDG 269

Query: 245 ----AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
               A  LF EM+ KG+ P++FTY+S++ G C  G  S A +LLQ M+ ++  P++VTY+
Sbjct: 270 RHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            L+N   KEGK  EA E+ D M  +G+ P+   Y  +I  FC   +   A +    M   
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           G +PN +T+       NT++ G C     +   ++   M    +  D+ TY++LI  F  
Sbjct: 390 GCSPNLITF-------NTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            GD++ +  ++ E++  G  PD  T   ++  L D  K++ A E+ 
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 12/331 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I+  V   +F  AE+L D +           + S+  G+ + +R   A  +F
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M   GC P   ++ T++       ++         M E G+     + N LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF-YL 442

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET--------- 219
            G ++AA  + +EM + G  PD  T  TL++GLC  GK+ +A E+FK M+          
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502

Query: 220 --KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P V TY  LI+GL       EA  L+EEM  +G+ P+  TYSS++DGLCK    
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A ++   M SK   PN+VT++TL+NG CK G++ + +E+   M  +G+  +A  Y  +
Sbjct: 563 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           I  F  +G    A +   EM+  G+ P+ +T
Sbjct: 623 ICGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D    ++++M  +    D Y++  LI   C   K+  A   F ++      P VVT+ +L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTL 155

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           ++GLC    V EA+ LF +M      PNV T+++LM+GLC+ G   +A+ LL  M+    
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-LQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           +P  +TY T+++G+CK+G    A+ +L +M+ +  + P+  +Y  II   C  G++ +A 
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           N   EM   GI P+  T+       N+++ G C +   + A Q+   M  R IS D +TY
Sbjct: 276 NLFTEMQEKGIFPDLFTY-------NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           ++LI  F K+G   ++  + DE++  G +P+  T+S+++     + ++  A  +  L   
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388

Query: 471 NKC 473
             C
Sbjct: 389 KGC 391



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 150/295 (50%), Gaps = 9/295 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L+  + R+ +      L+++ME K     + ++T 
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI   C    +  A+  F ++   G+ P+V T+++L+ GLC     S+A+ L   M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RPN+VT++TL+NGLC+EG++ EAV +LDRM   GL+P    YG I+   C  G    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSISVDSLT 409
           N L +M  +  I PN       + I++ ++  LCK   +   Q ++  M+ + I  D  T
Sbjct: 240 NLLRKMEEVSHIIPN-------VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+S+I  FC  G    + +++ E++     PD  T++A++ A     K  +A EL
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 152/284 (53%), Gaps = 12/284 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I     A +     +LL  + +         + ++  G+  V     A+ +  +M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GIQPCVASLNV 160
              G  P   +  T+L  L +  +LK A   ++ M++            G++P V + N+
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  L  N G    A +++ EMP+RG  PD+ TY ++I+GLC+  ++ EA ++F  M +K
Sbjct: 517 LISGLI-NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 575

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
           + SP VVT+T+LING C++  V++ + LF EM  +G+  N  TY +L+ G  K G  + A
Sbjct: 576 SFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGA 635

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +++ Q MIS    P+ +T   +L GL  + +L+ AV +L+++++
Sbjct: 636 LDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 36/210 (17%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++++IS L++  +F  AE+L                               
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEEL------------------------------- 533

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               +++M   G  P   +Y +++  L ++++L  A + +  M      P V +   LI 
Sbjct: 534 ----YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 589

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK +G +D   ++F EM  RG   ++ TY TLI G  ++G I  A ++F+EM +    
Sbjct: 590 GYCK-AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           P  +T  +++ GL   + ++ A+ + E+++
Sbjct: 649 PDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 200/395 (50%), Gaps = 33/395 (8%)

Query: 103 DAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           +A RVF+KM KE  C P   +Y  ++  L E  +L+ AF+  + M E G QP   +  VL
Sbjct: 247 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 306

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IKA C + G  D A K+  EM  + C P+ +TY  LI+ LCR GKI EA  +F++M    
Sbjct: 307 IKAKC-DIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 365

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P ++T+ +LING C+   V  A +L   M     +PN+ TY+ LM+GLC+   S +A 
Sbjct: 366 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 425

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ ++     P+ VTY+ L++G CKEG+L  A  I + M   GL+PD   +  +I   
Sbjct: 426 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGL 485

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH-------------NTVVQGLCKTDP 388
           C +G+ ++A   L  MV  GI+ + +T++  I  H               +V+  C T  
Sbjct: 486 CKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTA 545

Query: 389 NRAFQVYLSMRNRSISVDS-----------------LTYSSLITCFCKKGDIHKSARIVD 431
           +  F  +L    +   ++                  +T++ LI   C+ G+   S ++++
Sbjct: 546 H-TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 604

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +   GC P+  T++ ++  L +  ++ +A  +L 
Sbjct: 605 RMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILF 639



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 222/482 (46%), Gaps = 47/482 (9%)

Query: 7   FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF 66
           F   T + ++ VL   R + D+ +A  +F+  + E     R ++ T+S++I  L  A + 
Sbjct: 225 FGLDTHVCTSLVLANCRRD-DLGEAFRVFEKMSKE--ENCRPNSVTYSILIHGLCEAGRL 281

Query: 67  RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
             A  L   + ++ C  +   +  + +    +     AM++ D+M    C P   +Y  +
Sbjct: 282 EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 341

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           +  L  E +++ A   +R M + G+ P + + N LI   CK  G + +AF++   M    
Sbjct: 342 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK-EGWVVSAFQLLSVMEKGN 400

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           C P+  TY  L+ GLCR+ K Y+A  L + +      P  VTY  L++G C+   +  A 
Sbjct: 401 CKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAF 460

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            +F  M S G+EP+ FT+++L+DGLCK G   QA  +L  M+ K    + VT++ L++G 
Sbjct: 461 NIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGH 520

Query: 307 CKEGK-----------------------------------LQEAVEILDRMKLQGLKPDA 331
           CK GK                                   L EA  +L +M   GL P  
Sbjct: 521 CKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSV 580

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNR 390
             +  +I   C  G+   +   L+ M   G +PN  T+++       ++ GLC       
Sbjct: 581 VTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI-------IINGLCNNGRVEE 633

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A  +  SM +  +S +  TY+ L+    K G + ++ +IV  +V +GC P+   +SA+++
Sbjct: 634 AETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLS 693

Query: 451 AL 452
             
Sbjct: 694 GF 695



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 190/406 (46%), Gaps = 43/406 (10%)

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M   D M E G   +   Y T+L  L + N   +AF  YR M   G          ++ A
Sbjct: 144 MGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNA 203

Query: 165 LCKNSGTMDA----------------------------------AFKIFREMPNR-GCTP 189
           LCKN     A                                  AF++F +M     C P
Sbjct: 204 LCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRP 263

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +S TY  LI+GLC  G++ EA +L +EM  K C P+  TYT LI   C     ++AM++ 
Sbjct: 264 NSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKML 323

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM +K   PNV TY+ L+D LC+ G   +A  + + M+     P I+T++ L+NG CKE
Sbjct: 324 DEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKE 383

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G +  A ++L  M+    KP+   Y +++   C + K  +A   L  +V  G+ P+R+T+
Sbjct: 384 GWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTY 443

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N +V G CK    N AF ++ SM +  +  D  T+++LI   CK G + ++  
Sbjct: 444 -------NILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 496

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           I+  +V  G   DE T++A++       K +    L    + N+C+
Sbjct: 497 ILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 542



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 154/389 (39%), Gaps = 65/389 (16%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  +N A  IF+S  +    G   D  TF+ +I  L    +   A  +L  + K+   + 
Sbjct: 453 EGQLNMAFNIFNSMNSA---GLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 509

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY--------------------- 123
           E  F ++  G+ ++ +  D   +F+ M E  C  T  ++                     
Sbjct: 510 EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLG 569

Query: 124 ----------ITVLAILVEEN----QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
                     +    IL+E +    +  L+ +    M++ G  P V +  ++I  LC N+
Sbjct: 570 KMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLC-NN 628

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G ++ A  I   M + G +P+ +TY  L+    + G++  A ++   M    C P    Y
Sbjct: 629 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 688

Query: 230 TSLINGLCQSKSVEEAMRLFE----EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           ++L++G   S +   A  L      + RS   E N        D  C           L 
Sbjct: 689 SALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN--------DNNC-----------LS 729

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
             I K   P    Y+ L+ GLCKEG++ EA ++   M   GL PD  +   II  +C   
Sbjct: 730 NEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTC 788

Query: 346 KYQEAANFLDEMVLGGITPNRLT--WSLH 372
           KY     F+  ++     P+  +  W +H
Sbjct: 789 KYDNCLEFMKLVLDNKFVPSFASYCWVIH 817



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
            V + M   + M   G   +   YS+L+  L K      A  + + M+++      + Y 
Sbjct: 139 GVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYR 198

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL- 359
           T++N LCK G +Q A     ++   G   D  +   ++   C      EA    ++M   
Sbjct: 199 TVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKE 258

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
               PN +T+S+       ++ GLC+      AFQ+   M  +     + TY+ LI   C
Sbjct: 259 ENCRPNSVTYSI-------LIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKC 311

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             G   K+ +++DE+    C+P+  T++ ++  L    K+ +A
Sbjct: 312 DIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEA 354


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 208/419 (49%), Gaps = 41/419 (9%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+ +I     +  R  DA  +F +M+E G  P   +Y +++       +   A +  + M
Sbjct: 257 IYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM 316

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E  I P V + N LI A  K  G    A +++ EM  RG  P++ TY ++I+G C+  +
Sbjct: 317 LERKISPDVVTYNALINAFVKE-GKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A+ +F  M TK CSP ++T+ +LI+G C +K +++ M L  EM   G+  +  TY++
Sbjct: 376 LDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK--- 323
           L+ G    G  + A++LLQ MIS    P+IVT  TLL+GLC  GKL++A+E+   M+   
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 324 --------LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR- 374
                     G++PD   Y  +IS   + GK+ EA    +EM   GI P+ +T+S  I  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 375 ---------------------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVD 406
                                         T++ G CK    +   +++  M  R I  +
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++TY +LI  F K G+I+ +  I  E++  G  PD  T   ++T LW + ++++A  +L
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAML 674



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 216/434 (49%), Gaps = 21/434 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ ++  L   ++   A +L  ++ +  C      F ++  G  R  R ++A
Sbjct: 144 GLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEA 203

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +PT  +Y T++  + ++     A    R M E+  I P V   + +I 
Sbjct: 204 VALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK+    DA   +F EM  +G  PD +TY ++I G C  G+  +A++L +EM  +  S
Sbjct: 264 SLCKDGRHSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS 322

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY +LIN   +     EA  L++EM  +G+ PN  TYSS++DG CK      A  +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M +K   PN++T++TL++G C   ++ + +E+L  M   GL  D   Y  +I  F  
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT----DPNRAFQVYLSMR 399
           +G    A + L EM+  G+ P+ +T        +T++ GLC      D    F+V    +
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTC-------DTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 400 N--------RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
                      +  D  TY+ LI+    +G   ++  + +E+   G +PD  T+S+++  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 452 LWDRRKMRQAAELL 465
           L  + ++ +A ++ 
Sbjct: 556 LCKQSRLDEATQMF 569



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 192/406 (47%), Gaps = 45/406 (11%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           R+ RP   + ++ KM+         S+  ++      ++L  A   +  + ++G+ P V 
Sbjct: 91  RMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVV 150

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N L+  LC     +  A  +F +M    C P+  T+ TL+NGLCR G+I EA  L   
Sbjct: 151 TFNTLLHGLCVED-RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDR 209

Query: 217 METKACSPTVVTYTSLINGLCQS----------KSVEE---------------------- 244
           M      PT +TY ++++G+C+           + +EE                      
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDG 269

Query: 245 ----AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
               A  LF EM+ KG+ P++FTY+S++ G C  G  S A +LLQ M+ ++  P++VTY+
Sbjct: 270 RHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            L+N   KEGK  EA E+ D M  +G+ P+   Y  +I  FC   +   A +    M   
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           G +PN +T+       NT++ G C     +   ++   M    +  D+ TY++LI  F  
Sbjct: 390 GCSPNLITF-------NTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            GD++ +  ++ E++  G  PD  T   ++  L D  K++ A E+ 
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 12/331 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I+  V   +F  AE+L D +           + S+  G+ + +R   A  +F
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M   GC P   ++ T++       ++         M E G+     + N LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF-YL 442

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET--------- 219
            G ++AA  + +EM + G  PD  T  TL++GLC  GK+ +A E+FK M+          
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502

Query: 220 --KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P V TY  LI+GL       EA  L+EEM  +G+ P+  TYSS++DGLCK    
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A ++   M SK   PN+VT++TL+NG CK G++ + +E+   M  +G+  +A  Y  +
Sbjct: 563 DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           I  F  +G    A +   EM+  G+ P+ +T
Sbjct: 623 ICGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D    ++++M  +    D Y++  LI   C   K+  A   F ++      P VVT+ +L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTL 155

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           ++GLC    V EA+ LF +M      PNV T+++LM+GLC+ G   +A+ LL  M+    
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-LQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           +P  +TY T+++G+CK+G    A+ +L +M+ +  + P+  +Y  II   C  G++ +A 
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           N   EM   GI P+  T+       N+++ G C +   + A Q+   M  R IS D +TY
Sbjct: 276 NLFTEMQEKGIFPDLFTY-------NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           ++LI  F K+G   ++  + DE++  G +P+  T+S+++     + ++  A  +  L   
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388

Query: 471 NKC 473
             C
Sbjct: 389 KGC 391



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 150/295 (50%), Gaps = 9/295 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L+  + R+ +      L+++ME K     + ++T 
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI   C    +  A+  F ++   G+ P+V T+++L+ GLC     S+A+ L   M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RPN+VT++TL+NGLC+EG++ EAV +LDRM   GL+P    YG I+   C  G    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 352 NFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSISVDSLT 409
           N L +M  +  I PN       + I++ ++  LCK   +   Q ++  M+ + I  D  T
Sbjct: 240 NLLRKMEEVSHIIPN-------VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+S+I  FC  G    + +++ E++     PD  T++A++ A     K  +A EL
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 152/284 (53%), Gaps = 12/284 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I     A +     +LL  + +         + ++  G+  V     A+ +  +M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-----------GIQPCVASLNV 160
              G  P   +  T+L  L +  +LK A   ++ M++            G++P V + N+
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNI 516

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  L  N G    A +++ EMP+RG  PD+ TY ++I+GLC+  ++ EA ++F  M +K
Sbjct: 517 LISGLI-NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 575

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
           + SP VVT+T+LING C++  V++ + LF EM  +G+  N  TY +L+ G  K G  + A
Sbjct: 576 SFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGA 635

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +++ Q MIS    P+ +T   +L GL  + +L+ AV +L+++++
Sbjct: 636 LDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 36/210 (17%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++++IS L++  +F  AE+L                               
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEEL------------------------------- 533

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               +++M   G  P   +Y +++  L ++++L  A + +  M      P V +   LI 
Sbjct: 534 ----YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLIN 589

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK +G +D   ++F EM  RG   ++ TY TLI G  ++G I  A ++F+EM +    
Sbjct: 590 GYCK-AGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVY 648

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           P  +T  +++ GL   + ++ A+ + E+++
Sbjct: 649 PDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 200/395 (50%), Gaps = 33/395 (8%)

Query: 103 DAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           +A RVF+KM KE  C P   +Y  ++  L E  +L+ AF+  + M E G QP   +  VL
Sbjct: 181 EAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 240

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IKA C + G  D A K+  EM  + C P+ +TY  LI+ LCR GKI EA  +F++M    
Sbjct: 241 IKAKC-DIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 299

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P ++T+ +LING C+   V  A +L   M     +PN+ TY+ LM+GLC+   S +A 
Sbjct: 300 LCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAF 359

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ ++     P+ VTY+ L++G CKEG+L  A  I + M   GL+PD   +  +I   
Sbjct: 360 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGL 419

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH-------------NTVVQGLCKTDP 388
           C +G+ ++A   L  MV  GI+ + +T++  I  H               +V+  C T  
Sbjct: 420 CKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTA 479

Query: 389 NRAFQVYLSMRNRSISVDS-----------------LTYSSLITCFCKKGDIHKSARIVD 431
           +  F  +L    +   ++                  +T++ LI   C+ G+   S ++++
Sbjct: 480 H-TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 538

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +   GC P+  T++ ++  L +  ++ +A  +L 
Sbjct: 539 RMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILF 573



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 223/482 (46%), Gaps = 47/482 (9%)

Query: 7   FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF 66
           F   T + ++ VL   R + D+ +A  +F+  + E +   R ++ T+S++I  L  A + 
Sbjct: 159 FGLDTHVCTSLVLANCRRD-DLGEAFRVFEKMSKEES--CRPNSVTYSILIHGLCEAGRL 215

Query: 67  RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
             A  L   + ++ C  +   +  + +    +     AM++ D+M    C P   +Y  +
Sbjct: 216 EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 275

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           +  L  E +++ A   +R M + G+ P + + N LI   CK  G + +AF++   M    
Sbjct: 276 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK-EGWVVSAFQLLSVMEKGN 334

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           C P+  TY  L+ GLCR+ K Y+A  L + +      P  VTY  L++G C+   +  A 
Sbjct: 335 CKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAF 394

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            +F  M S G+EP+ FT+++L+DGLCK G   QA  +L  M+ K    + VT++ L++G 
Sbjct: 395 NIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGH 454

Query: 307 CKEGK-----------------------------------LQEAVEILDRMKLQGLKPDA 331
           CK GK                                   L EA  +L +M   GL P  
Sbjct: 455 CKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSV 514

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNR 390
             +  +I   C  G+   +   L+ M   G +PN  T+++       ++ GLC       
Sbjct: 515 VTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI-------IINGLCNNGRVEE 567

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A  +  SM +  +S +  TY+ L+    K G + ++ +IV  +V +GC P+   +SA+++
Sbjct: 568 AETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLS 627

Query: 451 AL 452
             
Sbjct: 628 GF 629



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 190/406 (46%), Gaps = 43/406 (10%)

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M   D M E G   +   Y T+L  L + N   +AF  YR M   G          ++ A
Sbjct: 78  MGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNA 137

Query: 165 LCKNSGTMDA----------------------------------AFKIFREMPNR-GCTP 189
           LCKN     A                                  AF++F +M     C P
Sbjct: 138 LCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRP 197

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +S TY  LI+GLC  G++ EA +L +EM  K C P+  TYT LI   C     ++AM++ 
Sbjct: 198 NSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKML 257

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM +K   PNV TY+ L+D LC+ G   +A  + + M+     P I+T++ L+NG CKE
Sbjct: 258 DEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKE 317

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G +  A ++L  M+    KP+   Y +++   C + K  +A   L  +V  G+ P+R+T+
Sbjct: 318 GWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTY 377

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N +V G CK    N AF ++ SM +  +  D  T+++LI   CK G + ++  
Sbjct: 378 -------NILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 430

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           I+  +V  G   DE T++A++       K +    L    + N+C+
Sbjct: 431 ILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 476



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 158/394 (40%), Gaps = 59/394 (14%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  +N A  IF+S  +    G   D  TF+ +I  L    +   A  +L  + K+   + 
Sbjct: 387 EGQLNMAFNIFNSMNSA---GLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 443

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY--------------------- 123
           E  F ++  G+ ++ +  D   +F+ M E  C  T  ++                     
Sbjct: 444 EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLG 503

Query: 124 ----------ITVLAILVEEN----QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
                     +    IL+E +    +  L+ +    M++ G  P V +  ++I  LC N+
Sbjct: 504 KMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLC-NN 562

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G ++ A  I   M + G +P+ +TY  L+    + G++  A ++   M    C P    Y
Sbjct: 563 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 622

Query: 230 TSLINGLCQSKSVEEAMRLFE----EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           ++L++G   S +   A  L      + RS   E N        D  C      + M++  
Sbjct: 623 SALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN--------DNNCLSSHVFRLMDVDH 674

Query: 286 MM-----ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +     I K   P    Y+ L+ GLCKEG++ EA ++   M   GL PD  +   II  
Sbjct: 675 ALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEH 733

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLT--WSLH 372
           +C   KY     F+  ++     P+  +  W +H
Sbjct: 734 YCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIH 767



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 126/275 (45%), Gaps = 39/275 (14%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G+ R      ++++ ++MK+ GC P   +Y  ++  L    +++ A      M   G+ P
Sbjct: 523 GHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSP 582

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
              +  VL+KA  K +G +D AF+I   M   GC P+S+ Y  L++G         A+ L
Sbjct: 583 NHFTYAVLVKAHVK-AGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARAL 641

Query: 214 -------------------------FKEM----------ETKACS-PTVVTYTSLINGLC 237
                                    F+ M          E K C  PT   Y  L+ GLC
Sbjct: 642 SSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLC 701

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +   + EA +L ++M   G+ P+    SS+++  CK       +E +++++  +  P+  
Sbjct: 702 KEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFA 760

Query: 298 TYSTLLNGLCKEGKLQEAVEIL-DRMKLQGLKPDA 331
           +Y  +++GL  EG++QEA +++ D ++  G++ + 
Sbjct: 761 SYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEV 795



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
            V + M   + M   G   +   YS+L+  L K      A  + + M+++      + Y 
Sbjct: 73  GVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYR 132

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL- 359
           T++N LCK G +Q A     ++   G   D  +   ++   C      EA    ++M   
Sbjct: 133 TVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKE 192

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
               PN +T+S+       ++ GLC+      AFQ+   M  +     + TY+ LI   C
Sbjct: 193 ESCRPNSVTYSI-------LIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKC 245

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             G   K+ +++DE+    C+P+  T++ ++  L    K+ +A
Sbjct: 246 DIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEA 288


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 199/371 (53%), Gaps = 9/371 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+ +  +++ +I    S      A  +LD +  +  +     + S+  G  +  R  +A
Sbjct: 279 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEA 338

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FDKM E G  P   +Y T++     +  L+ AF +   M + GI P V++ N+L+ A
Sbjct: 339 SGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHA 398

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L    G M  A  + +EM  +G  PD+ TY  LING  R G   +A +L  EM +K   P
Sbjct: 399 LFM-EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEP 457

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T VTYTSLI  L +   ++EA  LFE++  +GV P+V  +++++DG C  G   +A  LL
Sbjct: 458 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLL 517

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P+ VT++TL+ G C+EGK++EA  +LD MK +G+KPD   Y  +IS +   
Sbjct: 518 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRR 577

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           G  ++A    DEM+  G  P  LT+       N +++ LCK  + + A ++   M N+ I
Sbjct: 578 GDIKDAFRVRDEMLSIGFNPTLLTY-------NALIKCLCKNQEGDLAEELLKEMVNKGI 630

Query: 404 SVDSLTYSSLI 414
           S D  TY SLI
Sbjct: 631 SPDDSTYLSLI 641



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 208/418 (49%), Gaps = 13/418 (3%)

Query: 42  YANGFRHDNS----TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97
           YA  FR   S    TF++M++ L    + + A + +  +           + +I  GY  
Sbjct: 237 YAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSS 296

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
                 A R+ D M+  G EP   +Y ++++ + +E +L+ A   +  M EIG+ P   +
Sbjct: 297 RGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVT 356

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N LI   C N G ++ AF    EM  +G  P   TY  L++ L   G++ EA ++ KEM
Sbjct: 357 YNTLIDGYC-NKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 415

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
             K   P  +TY  LING  +  + ++A  L  EM SKG+EP   TY+SL+  L +    
Sbjct: 416 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 475

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A +L + ++ +   P+++ ++ +++G C  G ++ A  +L  M  + + PD   +  +
Sbjct: 476 KEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 535

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           +   C  GK +EA   LDEM   GI P+ +++       NT++ G  +  D   AF+V  
Sbjct: 536 MQGRCREGKVEEARMLLDEMKRRGIKPDHISY-------NTLISGYGRRGDIKDAFRVRD 588

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            M +   +   LTY++LI C CK  +   +  ++ E+V  G  PD+ T+ +++  + +
Sbjct: 589 EMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 646



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 223/468 (47%), Gaps = 81/468 (17%)

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
           K  I  D+ + +C     + R  +A + F  MKE G  P  ++   +L++ ++ N++++A
Sbjct: 177 KSSIVFDLLVRVC---CELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMA 233

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCK-------------------------------- 167
           +  Y  M  + I   V + N+++  LCK                                
Sbjct: 234 WVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHG 293

Query: 168 --NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
             + G ++ A +I   M  +G  PDSYTYG+LI+G+C+ G++ EA  LF +M      P 
Sbjct: 294 YSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPN 353

Query: 226 VVTYTSLINGLCQSKSVE-----------------------------------EAMRLFE 250
            VTY +LI+G C    +E                                   EA  + +
Sbjct: 354 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 413

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EMR KG+ P+  TY+ L++G  + G + +A +L   M+SK   P  VTY++L+  L +  
Sbjct: 414 EMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRN 473

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +++EA ++ +++  QG+ PD  ++  ++   C  G  + A   L EM    + P+ +T+ 
Sbjct: 474 RMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTF- 532

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 NT++QG C+       ++ L  M+ R I  D ++Y++LI+ + ++GDI  + R+
Sbjct: 533 ------NTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV 586

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
            DE++  G  P   T++A++  L  + +    AE LL E++NK +  +
Sbjct: 587 RDEMLSIGFNPTLLTYNALIKCLC-KNQEGDLAEELLKEMVNKGISPD 633



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 4/199 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T   ++ ++     + +A  +F+    +   G   D   F+ M+    +      A 
Sbjct: 458 THVTYTSLIYVLSRRNRMKEADDLFEKILDQ---GVSPDVIMFNAMVDGHCANGNVERAF 514

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL  ++++     E  F ++ +G  R  +  +A  + D+MK  G +P   SY T+++  
Sbjct: 515 MLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGY 574

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
                +K AFR    M  IG  P + + N LIK LCKN    D A ++ +EM N+G +PD
Sbjct: 575 GRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEG-DLAEELLKEMVNKGISPD 633

Query: 191 SYTYGTLINGLCRLGKIYE 209
             TY +LI G+  +  + E
Sbjct: 634 DSTYLSLIEGMGNVDTLVE 652


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/407 (30%), Positives = 205/407 (50%), Gaps = 15/407 (3%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           ++ S +I   V+  +   A  +L  + K    +    F  + +G+ +      AM +F  
Sbjct: 95  TSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCM 154

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           MK     P   SY TV+  L +  +L  A   ++ M+    +P   + + LI   CKN G
Sbjct: 155 MKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKN-G 213

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++  F +  EM   G   D + Y  LI+G C  G I   KELF EM  K  +P VVTY+
Sbjct: 214 DVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYS 273

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            L+N LC+ +  +EA ++ + M    V P+V  Y+ L DGL K G +S A+++L +M+ +
Sbjct: 274 CLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKR 333

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN VTY+ ++NGLCKEG++ +A+ IL+ M  +G KPD   Y  ++   C +GK  EA
Sbjct: 334 GEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEA 393

Query: 351 ANFLDEMVLGGITPNRLTWSLHIR----IHNTVVQGLCKTDPNR-AFQVYLSMRNRSISV 405
            + L+ +         ++   HI+      N V+Q LCK    R A +VY +M  R    
Sbjct: 394 VDLLNLL---------MSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPS 444

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           + +TY+ LI  +   G + K+  +  + V  G  P+  T++ ++  L
Sbjct: 445 NIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGL 491



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 182/360 (50%), Gaps = 11/360 (3%)

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + V  KM      P   S   ++   V   +   AF     + + G    V + N+L+K 
Sbjct: 79  ISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKG 138

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+ SG    A  +F  M      PD  +Y T+INGLC+  ++ EAKELFKEM+   C P
Sbjct: 139 FCQ-SGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKP 197

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT+++LI+G C++  VEE   L EEM   G+E +VF YS+L+ G C  G   +  EL 
Sbjct: 198 NSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELF 257

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+ K   PN+VTYS L+N LCK+ K +EA ++LD M    ++PD   Y  +       
Sbjct: 258 NEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKN 317

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSI 403
           G+  +A   LD MV  G  PN +T+       N ++ GLCK    + A  +  +M  +  
Sbjct: 318 GRASDAIKVLDLMVKRGEEPNNVTY-------NAIINGLCKEGRVDDALGILETMAKKGK 370

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLD--GCLPDEGTWSAVMTALWDRRKMRQA 461
             D +TYS+L+   C  G I ++  +++ L+       PD   ++ V+  L  +R++R A
Sbjct: 371 KPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHA 430



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 182/364 (50%), Gaps = 10/364 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P+  S  T++  L +          +  M  + + PC  SL+ LI++   N+     AF 
Sbjct: 57  PSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFV-NTQKPSFAFG 115

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +   +  RG   + Y +  L+ G C+ G  ++A +LF  M+     P  V+Y ++INGLC
Sbjct: 116 VLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLC 175

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + K + EA  LF+EM+    +PN  T+S+L+DG CK G   +   LL+ M       ++ 
Sbjct: 176 KGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVF 235

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            YS L++G C +G ++   E+ + M  + + P+   Y  +++  C   K++EAA  LD M
Sbjct: 236 VYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTM 295

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITC 416
               + P+ + +++       +  GL K    + A +V   M  R    +++TY+++I  
Sbjct: 296 TGCKVRPDVVAYTV-------LADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIING 348

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476
            CK+G +  +  I++ +   G  PD  T+S ++  L    K+ +A +LL L LM+K    
Sbjct: 349 LCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNL-LMSKEFHI 407

Query: 477 EVDI 480
           + D+
Sbjct: 408 KPDV 411



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 207/444 (46%), Gaps = 48/444 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI-FLSICRGYGRVHRPLD 103
           GF  +   F+L++     +     A DL   + K  C I + + + ++  G  +  R ++
Sbjct: 124 GFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMM-KRNCLIPDCVSYNTVINGLCKGKRLVE 182

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F +MK   C+P   ++  ++    +   ++  F     M ++G++  V   + LI 
Sbjct: 183 AKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALIS 242

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C + G ++   ++F EM  +  TP+  TY  L+N LC+  K  EA ++   M      
Sbjct: 243 GFC-SKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVR 301

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VV YT L +GL ++    +A+++ + M  +G EPN  TY+++++GLCK G    A+ +
Sbjct: 302 PDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGI 361

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM--KLQGLKPDAGLYGKIISCF 341
           L+ M  K  +P++VTYSTL+ GLC  GK+ EAV++L+ +  K   +KPD   +  +I   
Sbjct: 362 LETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQEL 421

Query: 342 C-----------------------------------DIGKYQEAANFLDEMVLGGITPNR 366
           C                                     GK  +A     + V  GI+PN 
Sbjct: 422 CKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNA 481

Query: 367 LTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT-YSSLITCFCKKGDIHK 425
            T+++       ++ GLCK       +   + +  S +  +++ Y++L+   C++  + +
Sbjct: 482 ATYTV-------LINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQ 534

Query: 426 SARIVDELVLDGCLPDEGTWSAVM 449
           +  +  E+      PD  +++ ++
Sbjct: 535 ARNLFQEMRNANHDPDVVSFNIII 558



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 197/426 (46%), Gaps = 15/426 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPL 102
           G   D   +S +IS   S       ++L + + ++  ++T ++    C      +  +  
Sbjct: 229 GLEGDVFVYSALISGFCSKGDIERGKELFNEMLRK--NVTPNVVTYSCLMNALCKKQKWK 286

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A ++ D M      P   +Y  +   L +  +   A +    M + G +P   + N +I
Sbjct: 287 EAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAII 346

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA- 221
             LCK  G +D A  I   M  +G  PD  TY TL+ GLC +GKI EA +L   + +K  
Sbjct: 347 NGLCK-EGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEF 405

Query: 222 -CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P V  +  +I  LC+ + +  A R++  M  +G   N+ TY+ L+DG    G  ++A
Sbjct: 406 HIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKA 465

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +EL +  +     PN  TY+ L+NGLCK   L  A  + ++ +  G +P    Y  +++ 
Sbjct: 466 LELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMAS 525

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
            C     ++A N   EM      P+ +++       N ++ G  K  D   A ++ L M 
Sbjct: 526 LCRESSVEQARNLFQEMRNANHDPDVVSF-------NIIIDGTLKAGDVESAKELLLEML 578

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N ++  D++T+S LI  F K G + ++A + + +V  G +PD   + +++     + K  
Sbjct: 579 NMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTE 638

Query: 460 QAAELL 465
           +   +L
Sbjct: 639 KVVSML 644



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 192/417 (46%), Gaps = 53/417 (12%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFD 109
           T+S +++ L    +++ A  +LD +    C +  D+  +  +  G  +  R  DA++V D
Sbjct: 271 TYSCLMNALCKKQKWKEAAQMLDTMTG--CKVRPDVVAYTVLADGLSKNGRASDAIKVLD 328

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
            M + G EP   +Y  ++  L +E ++  A      M + G +P V + + L+K LC   
Sbjct: 329 LMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLC-GV 387

Query: 170 GTMDAAF-------------------------------------KIFREMPNRGCTPDSY 192
           G +D A                                      +++  M  RG   +  
Sbjct: 388 GKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIV 447

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY  LI+G    GK+ +A EL+K+      SP   TYT LINGLC+ + +  A  LF + 
Sbjct: 448 TYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKK 507

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           R+ G  P V  Y++LM  LC+     QA  L Q M +  H P++V+++ +++G  K G +
Sbjct: 508 RASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDV 567

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           + A E+L  M    L PD   +  +I+ F  +G+  EAA+  + MV  G  P+ + +   
Sbjct: 568 ESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLF--- 624

Query: 373 IRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC---KKGDIHK 425
               +++++G   K    +   +   M ++ + +DS   S+++ C C   K  DI K
Sbjct: 625 ----DSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEK 677



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 169/317 (53%), Gaps = 7/317 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDIT--EDIFLSICRGYGRVHR 100
           G   +N T++ +I+ L    +   A  +L+ + K+  K D+     +   +C G G++  
Sbjct: 334 GEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLC-GVGKIDE 392

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            +D + +    KEF  +P   ++  V+  L ++ +L+ A R Y  M E G    + + N+
Sbjct: 393 AVDLLNLL-MSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNI 451

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI     ++G +  A +++++  + G +P++ TY  LINGLC++  +  AK LF +    
Sbjct: 452 LIDGYL-SAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRAS 510

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              PTV  Y +L+  LC+  SVE+A  LF+EMR+   +P+V +++ ++DG  K G    A
Sbjct: 511 GTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESA 570

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  M++    P+ +T+S L+N   K G+L EA  + +RM   G  PDA L+  ++  
Sbjct: 571 KELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKG 630

Query: 341 FCDIGKYQEAANFLDEM 357
           +   GK ++  + L +M
Sbjct: 631 YSLKGKTEKVVSMLQQM 647


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 233/459 (50%), Gaps = 32/459 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG  H+  T ++MI+      +   A  +L +V K   +     F ++  G     +   
Sbjct: 117 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSK 176

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ + D+M E GC+P   +Y +++  +       LAF   R M E  ++  V + + +I 
Sbjct: 177 AVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIID 236

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LC++ G +DAA  +F+EM  +G      TY +L+ GLC+ GK  +   L K+M ++   
Sbjct: 237 SLCRD-GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV 295

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+T+  L++   +   ++EA  L++EM ++G+ PN+ TY++LMDG C     S+A  +
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+  +  P+IVT+++L+ G C   ++ + +++   +  +GL  +A  Y  ++  FC 
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWS----------------------------LHIRI 375
            GK + A     EMV  G+ P+ +T+                             L I +
Sbjct: 416 SGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM 475

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           + T+++G+CK      A+ ++ S+  + +  + +TY+ +I+  CKKG + ++  ++ ++ 
Sbjct: 476 YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            DG  P++ T++ ++ A      +  +A+  L+E M  C
Sbjct: 536 EDGNAPNDCTYNTLIRAHLRDGDLTASAK--LIEEMKSC 572



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 208/445 (46%), Gaps = 46/445 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D +TF+ +I+ L    +   A  L+DR+ +  C      + SI  G  R      A
Sbjct: 153 GYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLA 212

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  KM+E   +    +Y T++  L  +  +  A   ++ M   GI+  V + N L++ 
Sbjct: 213 FDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 165 LCK----------------------------------NSGTMDAAFKIFREMPNRGCTPD 190
           LCK                                    G +  A ++++EM  RG +P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY TL++G C   ++ EA  +   M    CSP +VT+TSLI G C  K V++ M++F 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            +  +G+  N  TYS L+ G C+ G    A EL Q M+S    P+++TY  LL+GLC  G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 311 KLQEAVEILDRMKLQGLKPDAG--LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           KL++A+EI +   LQ  K D G  +Y  II   C  GK ++A N    +   G+ PN +T
Sbjct: 453 KLEKALEIFE--DLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +++ I        GLCK        + L  M     + +  TY++LI    + GD+  SA
Sbjct: 511 YTVMI-------SGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 563

Query: 428 RIVDELVLDGCLPDEGTWSAVMTAL 452
           ++++E+   G   D  +   V+  L
Sbjct: 564 KLIEEMKSCGFSADASSIKMVIDML 588



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 194/392 (49%), Gaps = 30/392 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M      P    +    + +    Q  L   F + +   GI   + +LN++I
Sbjct: 71  DAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+   T   A+ +  ++   G  PD+ T+ TLINGLC  GK+ +A  L   M    C
Sbjct: 131 NCFCRCCKTC-FAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGC 189

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VTY S++NG+C+S     A  +  +M  + V+ +VFTYS+++D LC+ GC   A+ 
Sbjct: 190 QPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M +K  + ++VTY++L+ GLCK GK  +   +L  M  + + P+   +  ++  F 
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWS------------------LHIRIHN------- 377
             GK QEA     EM+  GI+PN +T++                  L + + N       
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 369

Query: 378 ---TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              ++++G C     +   +V+ ++  R +  +++TYS L+  FC+ G I  +  +  E+
Sbjct: 370 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM 429

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V  G LPD  T+  ++  L D  K+ +A E+ 
Sbjct: 430 VSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 461



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 149/302 (49%), Gaps = 8/302 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +F+EM      P    +    + + R  +     +  K++E    +  + T   +
Sbjct: 70  DDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+      A  +  ++   G EP+  T+++L++GLC  G  S+A+ L+  M+    
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGC 189

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P++VTY++++NG+C+ G    A ++L +M+ + +K D   Y  II   C  G    A +
Sbjct: 190 QPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
              EM   GI  + +T+       N++V+GLCK    N    +   M +R I  + +T++
Sbjct: 250 LFKEMETKGIKSSVVTY-------NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            L+  F K+G + ++  +  E++  G  P+  T++ +M     + ++ +A  +L L + N
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN 362

Query: 472 KC 473
           KC
Sbjct: 363 KC 364



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 34/268 (12%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ ++      N+   A ++LD + + KC      F S+ +GY  V R  D M+VF  +
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 394

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS-- 169
            + G      +Y  ++    +  ++KLA   ++ M   G+ P V +  +L+  LC N   
Sbjct: 395 SKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKL 454

Query: 170 --------------------------------GTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                                           G ++ A+ +F  +P +G  P+  TY  +
Sbjct: 455 EKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 514

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+GLC+ G + EA  L ++ME    +P   TY +LI    +   +  + +L EEM+S G 
Sbjct: 515 ISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGF 574

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             +  +   ++D L  G      +++L 
Sbjct: 575 SADASSIKMVIDMLLSGELDKSFLDMLS 602


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 201/376 (53%), Gaps = 15/376 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + +  T++ +I    S  +   A  + D +           + S   G  +  +  
Sbjct: 219 ALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLE 278

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  + +KMKE G  PT  +Y T++     +  L++AF +   M   G+ P V++ N+LI
Sbjct: 279 EASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLI 338

Query: 163 KAL---CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            AL   CK    MD A  I +EM  +G  PDS TY  LING CR G + +A  L  EM +
Sbjct: 339 HALFLDCK----MDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMIS 394

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K   PT VTYTSLI  L +   +++A  LFE++  KG+ P++  +++L+DG C  G   +
Sbjct: 395 KGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDR 454

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  +L+ M   +  P+ VT++TL+ G C+EGK++ A E+++ MK +G+KPD   Y  +IS
Sbjct: 455 AFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLIS 514

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
            +   G  ++A    DEM+  G  P  LT+       N ++QGLCK +  + A Q+   M
Sbjct: 515 GYSKRGDMKDAFRVRDEMLSIGFNPTLLTY-------NALIQGLCKNEEGDHAEQLLKEM 567

Query: 399 RNRSISVDSLTYSSLI 414
            ++ I+ +  TY SLI
Sbjct: 568 ISKGITPNDNTYLSLI 583



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 203/404 (50%), Gaps = 9/404 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF++MI+ L    + + A++ +  +           + +I  GY    R   A  +FD M
Sbjct: 193 TFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLM 252

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K  G +P   +Y + ++ + +E +L+ A      M+EIG++P   + N LI   C N G 
Sbjct: 253 KCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYC-NKGN 311

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ AF    +M   G  P   TY  LI+ L    K+ EA  + KEM  K   P  VTY  
Sbjct: 312 LEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNI 371

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LING C+  +V++A  L +EM SKG++P   TY+SL+  L K G   QA +L + ++ K 
Sbjct: 372 LINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKG 431

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+++ ++ L++G C  G +  A  +L  M    + PD   +  ++   C  GK + A 
Sbjct: 432 IFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAAR 491

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTY 410
             ++EM   GI P+ +++       NT++ G  K  D   AF+V   M +   +   LTY
Sbjct: 492 ELIEEMKSRGIKPDHISY-------NTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTY 544

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           ++LI   CK  +   + +++ E++  G  P++ T+ +++  + +
Sbjct: 545 NALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGN 588



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 203/389 (52%), Gaps = 45/389 (11%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           ++  ++ +L +E +LK A  F   M  +GI+P V + N +I   C + G ++ A  IF  
Sbjct: 193 TFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYC-SRGRVEGARMIFDL 251

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  RG  PDSYTYG+ I+G+C+ GK+ EA  + ++M+     PT VTY +LI+G C   +
Sbjct: 252 MKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGN 311

Query: 242 VE-----------------------------------EAMRLFEEMRSKGVEPNVFTYSS 266
           +E                                   EA  + +EM  KG+ P+  TY+ 
Sbjct: 312 LEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNI 371

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L++G C+ G   +A  L   MISK  +P  VTY++L+  L K G++++A ++ +++  +G
Sbjct: 372 LINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKG 431

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           + PD  ++  +I   C  G    A   L EM    + P+ +T+       NT++QG C+ 
Sbjct: 432 IFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTF-------NTLMQGRCRE 484

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                A ++   M++R I  D ++Y++LI+ + K+GD+  + R+ DE++  G  P   T+
Sbjct: 485 GKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTY 544

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKCV 474
           +A++  L  + +    AE LL E+++K +
Sbjct: 545 NALIQGLC-KNEEGDHAEQLLKEMISKGI 572



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 190/391 (48%), Gaps = 30/391 (7%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R  DA   FD MK  G  P   +   +L++ ++ N+ + A+  Y  M  + I+  V + N
Sbjct: 136 RGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFN 195

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           ++I  LCK  G +  A +    M   G  P+  TY T+I+G C  G++  A+ +F  M+ 
Sbjct: 196 IMINVLCK-EGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKC 254

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +   P   TY S I+G+C+   +EEA  + E+M+  G+ P   TY++L+DG C  G    
Sbjct: 255 RGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEM 314

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A +    M+ +   P + TY+ L++ L  + K+ EA  I+  M  +GL PD+  Y  +I+
Sbjct: 315 AFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILIN 374

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI------------------------ 375
            +C  G  ++A    DEM+  GI P R+T++  I +                        
Sbjct: 375 GYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFP 434

Query: 376 ----HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                N ++ G C   + +RAF +   M    +  D +T+++L+   C++G +  +  ++
Sbjct: 435 DLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELI 494

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +E+   G  PD  +++ +++    R  M+ A
Sbjct: 495 EEMKSRGIKPDHISYNTLISGYSKRGDMKDA 525



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 170/328 (51%), Gaps = 9/328 (2%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           AF  +  M+  G+ P V + N ++    K++ T + A+ ++ EM          T+  +I
Sbjct: 140 AFECFDMMKGKGVIPHVHACNDMLSLFLKSNRT-EKAWVLYAEMFRMRIKSSVVTFNIMI 198

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           N LC+ GK+ +AKE    ME     P VVTY ++I+G C    VE A  +F+ M+ +GV+
Sbjct: 199 NVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVK 258

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P+ +TY S + G+CK G   +A  +L+ M     RP  VTY+TL++G C +G L+ A + 
Sbjct: 259 PDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDY 318

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
            D+M  +GL P    Y  +I       K  EA   + EM   G+ P+ +T+       N 
Sbjct: 319 RDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTY-------NI 371

Query: 379 VVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ G C+  +  +AF ++  M ++ I    +TY+SLI    K+G + ++  + +++V  G
Sbjct: 372 LINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKG 431

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD   ++A++        M +A  +L
Sbjct: 432 IFPDLIMFNALIDGHCANGNMDRAFAML 459



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 167/307 (54%), Gaps = 7/307 (2%)

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           ++LI+A C+     D AF+ F  M  +G  P  +    +++   +  +  +A  L+ EM 
Sbjct: 125 DLLIRACCELKRG-DDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                 +VVT+  +IN LC+   +++A      M + G++PNV TY++++ G C  G   
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A  +  +M  +  +P+  TY + ++G+CKEGKL+EA  +L++MK  GL+P A  Y  +I
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSM 398
             +C+ G  + A ++ D+MV  G+ P   T+++   IH   +   CK D   A  +   M
Sbjct: 304 DGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNM--LIHALFLD--CKMD--EADGIIKEM 357

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             + +  DS+TY+ LI  +C+ G++ K+  + DE++  G  P   T+++++  L  R +M
Sbjct: 358 SEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRM 417

Query: 459 RQAAELL 465
           +QA +L 
Sbjct: 418 KQADDLF 424



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 143/273 (52%), Gaps = 3/273 (1%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI-CR 93
           FD        G     ST++++I  L    +   A+ ++  ++ EK  + + +  +I   
Sbjct: 316 FDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMS-EKGLVPDSVTYNILIN 374

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           GY R      A  + D+M   G +PT  +Y +++ +L +  ++K A   +  +   GI P
Sbjct: 375 GYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFP 434

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            +   N LI   C N G MD AF + +EM      PD  T+ TL+ G CR GK+  A+EL
Sbjct: 435 DLIMFNALIDGHCAN-GNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAAREL 493

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            +EM+++   P  ++Y +LI+G  +   +++A R+ +EM S G  P + TY++L+ GLCK
Sbjct: 494 IEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCK 553

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
                 A +LL+ MISK   PN  TY +L+ G+
Sbjct: 554 NEEGDHAEQLLKEMISKGITPNDNTYLSLIEGI 586



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 159/355 (44%), Gaps = 36/355 (10%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           +K    + TP    T L  L       LAF+F  H   IG          L  A+  ++ 
Sbjct: 28  IKHLAHKITPSLISTALTSL--HKTPDLAFQFVTH---IGFGDLDIKSKCLAMAVISHAP 82

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS---PTVV 227
               + ++ +E  N G                    +Y  +E+F E+          T V
Sbjct: 83  NSKPSLQLLKETINSG--------------------VYSIREVFNELGVARGVLGIKTYV 122

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            Y  LI   C+ K  ++A   F+ M+ KGV P+V   + ++    K   + +A  L   M
Sbjct: 123 LYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEM 182

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
              R + ++VT++ ++N LCKEGKL++A E +  M+  G+KP+   Y  II  +C  G+ 
Sbjct: 183 FRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRV 242

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           + A    D M   G+ P+  T+        + + G+CK      A  +   M+   +   
Sbjct: 243 EGARMIFDLMKCRGVKPDSYTYG-------SFISGMCKEGKLEEASGMLEKMKEIGLRPT 295

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           ++TY++LI  +C KG++  +    D++V +G +P   T++ ++ AL+   KM +A
Sbjct: 296 AVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEA 350


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 185/349 (53%), Gaps = 13/349 (3%)

Query: 122 SYITVLAILVEE----NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           S +  LAI++      N++   F     + ++G QP  A+   LI+ LC   G +  A  
Sbjct: 107 SDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCV-EGKIGEALH 165

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +F +M   G  P+  TYGTLI+GLC++G    A  L + M  K C P V+TY ++I+ L 
Sbjct: 166 LFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLF 225

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + + V EA+ +F EM +KG+ PNV TY+S++ GLCK         L+  M+  +  PN+V
Sbjct: 226 KDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVV 285

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            ++TL++ LCKEG +  A +++D M  +G++PD   Y  ++   C   +  EA    D M
Sbjct: 286 IFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTM 345

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
           V  G  PN +++S       T++ G CK    ++A  ++  M  R +  + +TY++LI  
Sbjct: 346 VRKGCAPNVISYS-------TLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHG 398

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            C  G +  +  +  E+V  G +PD  T+  ++  L   R + QA  +L
Sbjct: 399 LCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAML 447



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 210/422 (49%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ +I  L    +   A  L D++  E        + ++  G  +V     A
Sbjct: 139 GHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAA 198

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M +  CEP   +Y T++  L ++ Q+  A   +  M   GI P V++ N +I  
Sbjct: 199 IRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHG 258

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK S     A  +  EM +    P+   + TL++ LC+ G +  A ++   M  +   P
Sbjct: 259 LCKFSEWKHVA-TLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEP 317

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+L++G C    ++EA ++F+ M  KG  PNV +YS+L++G CK     +AM L 
Sbjct: 318 DVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLF 377

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +   PNIVTY+TL++GLC  G+L++A+ +   M   G  PD   Y  ++   C  
Sbjct: 378 EEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKT 437

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
               +A   L  +    + P+       I+ +N V+ G+C+  +   A  ++ S+ ++ +
Sbjct: 438 RHLDQAMAMLKAIEGSNLAPD-------IQSYNIVIDGMCRVGELEAAGDLFSSLSSKGL 490

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D  TY+ +I   C +G + ++ ++  E+  DGC PD+ T++ +        +   A +
Sbjct: 491 HPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQ 550

Query: 464 LL 465
           LL
Sbjct: 551 LL 552



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 209/467 (44%), Gaps = 48/467 (10%)

Query: 6   MFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           +FK   +  +A    LIR    E  + +AL +FD    E   GF+ +  T+  +I  L  
Sbjct: 135 IFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGE---GFQPNGVTYGTLIHGLCK 191

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
               R A  LL  + ++ C+     + +I     +  +  +A+ +F +M   G  P   +
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVST 251

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS------------- 169
           Y +++  L + ++ K        M +  I P V     L+ ALCK               
Sbjct: 252 YNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMI 311

Query: 170 ---------------------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
                                  MD A K+F  M  +GC P+  +Y TLING C++ +I 
Sbjct: 312 QRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRID 371

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A  LF+EM  +   P +VTY +LI+GLC    + +A+ LF EM + G  P++ TY  L+
Sbjct: 372 KAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILL 431

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           D LCK     QAM +L+ +      P+I +Y+ +++G+C+ G+L+ A ++   +  +GL 
Sbjct: 432 DYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLH 491

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           PD   Y  +I+  C  G   EA     EM   G +P+  T+       N + +G  + + 
Sbjct: 492 PDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTY-------NLITRGFLRNNE 544

Query: 389 N-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
              A Q+   M  R  S D+ T + ++      G      +I+ E V
Sbjct: 545 TLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQILHEFV 591



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 143/299 (47%), Gaps = 8/299 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N  T+D A   F  M +    P    +  ++  +  +        L K+M++      V 
Sbjct: 51  NFNTIDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVY 110

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T   +IN  C    V+    +  ++   G +P+  T+++L+ GLC  G   +A+ L   M
Sbjct: 111 TLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKM 170

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           + +  +PN VTY TL++GLCK G  + A+ +L  M  +  +P+   Y  II C     + 
Sbjct: 171 VGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQV 230

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVD 406
            EA N   EM+  GI+PN  T+       N+++ GLCK    +     ++ M +  I  +
Sbjct: 231 NEALNIFSEMIAKGISPNVSTY-------NSIIHGLCKFSEWKHVATLMNEMVDSKIMPN 283

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + +++L+   CK+G +  +  +VD ++  G  PD  T++A+M     R +M +A ++ 
Sbjct: 284 VVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVF 342


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 209/410 (50%), Gaps = 15/410 (3%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVFDK 110
           F  ++S LV    +     L  R+  E   I  D+F    +   + R+ R   A  V  K
Sbjct: 87  FDKLLSALVRIKHYGTVLSLSKRI--ELLRIERDVFHFNILINCFSRLQRVDFAFSVLGK 144

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           + + G EP   ++ +++  L  E++   A  F+  M   G QP + + N +IK  CK  G
Sbjct: 145 IIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCK-IG 203

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
               A  + ++M   G  PD   Y T+I+GLC+   + EA ++F E++ K   P V TY+
Sbjct: 204 KTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYS 263

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            L++GLC S   EEA  LF EM S  + P+V T++ L+D LCK G  S+A  ++++MI K
Sbjct: 264 ILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEK 323

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN  TY++L+NG C + K+ EA  + D M  +G  P+   Y  +I+ +C   +  EA
Sbjct: 324 GVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEA 383

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLT 409
               DEM   G+ PN   +       NT++ GLC+   +  A +++  M+ +  S D +T
Sbjct: 384 RELFDEMSFRGLIPNTFNY-------NTLISGLCQAGRHCEARELFKDMQAQGCSPDLVT 436

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCL-PDEGTWSAVMTALWDRRKM 458
            + L+   CK G +  + R+   +  D CL P+  T+  ++ A++   K+
Sbjct: 437 CTILLDSLCKLGYLDNALRLFRAMQ-DSCLKPNLVTYDILIRAMYKSGKI 485



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 174/334 (52%), Gaps = 4/334 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++  +  E    +A+  FD   A   +G++ +  T++ +I       +   A  L
Sbjct: 155 VTFSSLINGLCFEDKFARAMEFFDEMVA---SGYQPNLHTYNTIIKGFCKIGKTTVAVGL 211

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L +++K        I+ +I  G  +     +A+ +F ++K  G  P   +Y  ++  L  
Sbjct: 212 LKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCN 271

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            +Q + A   +  M  + I P V + N+L+  LCK  G +  A  I + M  +G  P+  
Sbjct: 272 SDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCK-EGMLSEAQGIIKIMIEKGVEPNYA 330

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +L+NG C   K++EA+ +F  M TK C P VV+Y  LING C+++ ++EA  LF+EM
Sbjct: 331 TYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEM 390

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+ PN F Y++L+ GLC+ G   +A EL + M ++   P++VT + LL+ LCK G L
Sbjct: 391 SFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYL 450

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
             A+ +   M+   LKP+   Y  +I      GK
Sbjct: 451 DNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGK 484



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 185/379 (48%), Gaps = 14/379 (3%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSAT----AEYAN---------GFRHDNSTFSL 55
           + T ++ ++ ++L+R E+DV    ++ +  +     ++A          GF  D  TFS 
Sbjct: 100 YGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSS 159

Query: 56  MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG 115
           +I+ L   ++F  A +  D +           + +I +G+ ++ +   A+ +  KM + G
Sbjct: 160 LINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAG 219

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
             P    Y T++  L ++  +  A   +  ++  G++P V + ++L+  LC NS   + A
Sbjct: 220 GRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLC-NSDQKEEA 278

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             +F EM +    PD  T+  L++ LC+ G + EA+ + K M  K   P   TY SL+NG
Sbjct: 279 SALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNG 338

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C    V EA  +F+ M +KG  PNV +Y+ L++G CK     +A EL   M  +   PN
Sbjct: 339 YCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPN 398

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
              Y+TL++GLC+ G+  EA E+   M+ QG  PD      ++   C +G    A     
Sbjct: 399 TFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFR 458

Query: 356 EMVLGGITPNRLTWSLHIR 374
            M    + PN +T+ + IR
Sbjct: 459 AMQDSCLKPNLVTYDILIR 477



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 174/366 (47%), Gaps = 13/366 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F+ M      P    +  +L+ LV            + +  + I+  V   N+LI
Sbjct: 67  DALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILI 126

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               +    +D AF +  ++   G  PD+ T+ +LINGLC   K   A E F EM     
Sbjct: 127 NCFSRLQ-RVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGY 185

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P + TY ++I G C+      A+ L ++M   G  P++  Y++++DGLCK    S+A++
Sbjct: 186 QPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALD 245

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   +  K  RP++ TYS L++GLC   + +EA  + + M    + PD   +  ++   C
Sbjct: 246 IFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLC 305

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ---VYLSMR 399
             G   EA   +  M+  G+ PN  T+       N+++ G C    N+ F+   V+ +M 
Sbjct: 306 KEGMLSEAQGIIKIMIEKGVEPNYATY-------NSLMNGYCLQ--NKVFEARMVFDAMI 356

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            +    + ++Y+ LI  +CK   I ++  + DE+   G +P+   ++ +++ L    +  
Sbjct: 357 TKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHC 416

Query: 460 QAAELL 465
           +A EL 
Sbjct: 417 EARELF 422



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 146/297 (49%), Gaps = 9/297 (3%)

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C  +   DA F  F  M ++   P    +  L++ L R+        L K +E       
Sbjct: 60  CSLTNIEDALFS-FNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERD 118

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           V  +  LIN   + + V+ A  +  ++   G EP+  T+SSL++GLC     ++AME   
Sbjct: 119 VFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFD 178

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M++  ++PN+ TY+T++ G CK GK   AV +L +M   G +PD  +Y  II   C   
Sbjct: 179 EMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDR 238

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
              EA +   E+   G+ P+  T+S+       ++ GLC +D    A  ++  M + +I 
Sbjct: 239 LVSEALDIFSEIKGKGVRPDVFTYSI-------LMHGLCNSDQKEEASALFNEMMSLNIM 291

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            D +T++ L+   CK+G + ++  I+  ++  G  P+  T++++M     + K+ +A
Sbjct: 292 PDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEA 348



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 9/282 (3%)

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C L  I +A   F  M  K   P +V +  L++ L + K     + L + +    +E +V
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDV 119

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
           F ++ L++   +      A  +L  +I     P+ VT+S+L+NGLC E K   A+E  D 
Sbjct: 120 FHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDE 179

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M   G +P+   Y  II  FC IGK   A   L +M   G  P+       I I+NT++ 
Sbjct: 180 MVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPD-------IVIYNTIID 232

Query: 382 GLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLCK    + A  ++  ++ + +  D  TYS L+   C      +++ + +E++    +P
Sbjct: 233 GLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMP 292

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           D  T++ ++  L  +  M   A+ ++  ++ K VE      N
Sbjct: 293 DVVTFNILVDKLC-KEGMLSEAQGIIKIMIEKGVEPNYATYN 333



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   + +T++ +++     N+   A  + D +  + C      +  +  GY +  R  +A
Sbjct: 324 GVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEA 383

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FD+M   G  P   +Y T+++ L +  +   A   ++ M+  G  P + +  +L+ +
Sbjct: 384 RELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDS 443

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
           LCK  G +D A ++FR M +    P+  TY  LI  + + GKIY
Sbjct: 444 LCK-LGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKIY 486


>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 733

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 218/423 (51%), Gaps = 38/423 (8%)

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
           +  +TED F+S+   YGR     +++++F KMKE G + T KSY  +  +++   +  +A
Sbjct: 152 RAAVTEDAFVSLIDSYGRAGIVQESVKLFKKMKELGLDRTVKSYDALFKVILRRGRYMMA 211

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
            R+Y  M   G+ P   + N+L+  +   S  +D A + + +M +RG  PD  TY TLIN
Sbjct: 212 KRYYNAMLLEGVDPTRHTFNILLWGMFL-SLRLDTAVRFYEDMKSRGILPDVVTYNTLIN 270

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           G  R  K+ EA++LF EM+ +   P V+++T+++ G   +  +++A+++FEEM+  GV+P
Sbjct: 271 GYFRFKKVDEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGRIDDALKVFEEMKGCGVKP 330

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAVEI 318
           NV T+S+L+ GLC     ++A ++L  M+ +   P +   +  +++  CK G L  A ++
Sbjct: 331 NVVTFSTLLPGLCDAEKMAEARDVLGEMVERYIAPKDNALFMKMMSCQCKAGDLDAAADV 390

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT----------PNRLT 368
           L  M    +  +AG YG +I  FC    Y +A   LD+++   I           P+   
Sbjct: 391 LKAMVRLSIPTEAGHYGVLIESFCKANVYDKAEKLLDKLIEKEIVLRPQNDSEMEPSAYN 450

Query: 369 WSL-----HIRI--------------------HNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
             +     H R                      N +++G  K  +P+ AF++   M  R 
Sbjct: 451 LMIGYLCEHGRTGKAETFFRQLLKKGVQDSVAFNNLIRGHSKEGNPDSAFEIMKIMGRRG 510

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           ++ D  +Y  LI  + +KG+   +   +D ++  G LP+   + +VM +L+D  +++ A+
Sbjct: 511 VARDVDSYRLLIESYLRKGEPADAKTALDGMLESGHLPESSLYRSVMESLFDDGRVQTAS 570

Query: 463 ELL 465
            ++
Sbjct: 571 RVM 573



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 159/319 (49%), Gaps = 9/319 (2%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL--CKNSGTMDAAF 176
           TP++ + ++ IL   ++L  A     +    G+     + +  +  +     +G +  + 
Sbjct: 118 TPETTLKIVQILGRYSKLNHARCILFNDTRGGVSRAAVTEDAFVSLIDSYGRAGIVQESV 177

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           K+F++M   G      +Y  L   + R G+   AK  +  M  +   PT  T+  L+ G+
Sbjct: 178 KLFKKMKELGLDRTVKSYDALFKVILRRGRYMMAKRYYNAMLLEGVDPTRHTFNILLWGM 237

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
             S  ++ A+R +E+M+S+G+ P+V TY++L++G  +     +A +L   M  +   PN+
Sbjct: 238 FLSLRLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPNV 297

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           ++++T+L G    G++ +A+++ + MK  G+KP+   +  ++   CD  K  EA + L E
Sbjct: 298 ISFTTMLKGYVAAGRIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMAEARDVLGE 357

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
           MV   I P     +L +++ +      CK  D + A  V  +M   SI  ++  Y  LI 
Sbjct: 358 MVERYIAPK--DNALFMKMMSCQ----CKAGDLDAAADVLKAMVRLSIPTEAGHYGVLIE 411

Query: 416 CFCKKGDIHKSARIVDELV 434
            FCK     K+ +++D+L+
Sbjct: 412 SFCKANVYDKAEKLLDKLI 430



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 152/369 (41%), Gaps = 50/369 (13%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHR 100
           + G   D  T++ +I+      +   AE L   V  +  DI  ++  F ++ +GY    R
Sbjct: 255 SRGILPDVVTYNTLINGYFRFKKVDEAEKLF--VEMKGRDIVPNVISFTTMLKGYVAAGR 312

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP------- 153
             DA++VF++MK  G +P   ++ T+L  L +  ++  A      M E  I P       
Sbjct: 313 IDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMAEARDVLGEMVERYIAPKDNALFM 372

Query: 154 ------CVAS-----------------------LNVLIKALCKNSGTMDAAFKIFREM-- 182
                 C A                          VLI++ CK +   D A K+  ++  
Sbjct: 373 KMMSCQCKAGDLDAAADVLKAMVRLSIPTEAGHYGVLIESFCK-ANVYDKAEKLLDKLIE 431

Query: 183 ------PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
                 P      +   Y  +I  LC  G+  +A+  F+++  K    +V  + +LI G 
Sbjct: 432 KEIVLRPQNDSEMEPSAYNLMIGYLCEHGRTGKAETFFRQLLKKGVQDSV-AFNNLIRGH 490

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
            +  + + A  + + M  +GV  +V +Y  L++   + G  + A   L  M+   H P  
Sbjct: 491 SKEGNPDSAFEIMKIMGRRGVARDVDSYRLLIESYLRKGEPADAKTALDGMLESGHLPES 550

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
             Y +++  L  +G++Q A  ++  M  +G K +  L  KI+      G  +EA   +D 
Sbjct: 551 SLYRSVMESLFDDGRVQTASRVMKSMVEKGAKENMDLVLKILEALLLRGHVEEALGRIDL 610

Query: 357 MVLGGITPN 365
           ++  G  P+
Sbjct: 611 LMHNGCEPD 619



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 139/331 (41%), Gaps = 41/331 (12%)

Query: 24  AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI 83
           A  DV KA+V     T         +   + ++I     AN +  AE LLD++      I
Sbjct: 386 AAADVLKAMVRLSIPT---------EAGHYGVLIESFCKANVYDKAEKLLDKL------I 430

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
            ++I L          RP           +   E  P +Y  ++  L E  +   A  F+
Sbjct: 431 EKEIVL----------RP-----------QNDSEMEPSAYNLMIGYLCEHGRTGKAETFF 469

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           R + + G+Q  VA  N LI+   K  G  D+AF+I + M  RG   D  +Y  LI    R
Sbjct: 470 RQLLKKGVQDSVA-FNNLIRGHSKE-GNPDSAFEIMKIMGRRGVARDVDSYRLLIESYLR 527

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G+  +AK     M      P    Y S++  L     V+ A R+ + M  KG + N+  
Sbjct: 528 KGEPADAKTALDGMLESGHLPESSLYRSVMESLFDDGRVQTASRVMKSMVEKGAKENMDL 587

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
              +++ L   G   +A+  + +++     P+   +  LL+ LC++ K   A+++LD + 
Sbjct: 588 VLKILEALLLRGHVEEALGRIDLLMHNGCEPD---FDHLLSVLCEKEKTIAALKLLDFVL 644

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
            +    D  +Y K++      GK   A + L
Sbjct: 645 ERDCIIDFSIYDKVLDALLAAGKTLNAYSIL 675


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 184/332 (55%), Gaps = 9/332 (2%)

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           +L+ ++ FY  + + G  P     NVL+   CK  G   A   +F E+P RG  P   ++
Sbjct: 122 ELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARL-VFDEIPKRGLRPTVVSF 180

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            TLI+G C+ G + E   L   ME++   P V T+++LINGLC+   ++E   LF+EM  
Sbjct: 181 NTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCG 240

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           KG+ PN  T++ L+DG CKGG    A++  QMM+++  RP++VTY+ L+NGLCK G L+E
Sbjct: 241 KGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKE 300

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A  +++ M   GL+PD   +  +I   C  G  + A      MV  GI  + + +++   
Sbjct: 301 ARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTV--- 357

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
               ++ GLC+    + A ++   M +     D  TY+ ++ CFCKKG++    +++ E+
Sbjct: 358 ----LISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEM 413

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             DG +P   T++A+M  L  + +++ A  LL
Sbjct: 414 QSDGHVPGVVTYNALMNGLCKQGQVKNAKMLL 445



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 153/325 (47%), Gaps = 34/325 (10%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            F  +  G+ +V     A  VFD++ + G  PT  S+ T+++   +   ++  FR    M
Sbjct: 144 FFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVM 203

Query: 147 REIGIQPCVASLNVLIKALCK----------------------------------NSGTM 172
               + P V + + LI  LCK                                    G +
Sbjct: 204 ESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A K F+ M  +G  PD  TY  LINGLC++G + EA+ L  EM      P  +T+T+L
Sbjct: 264 DLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   +E A+ +   M  +G+E +   ++ L+ GLC+ G    A  +L+ M+S   
Sbjct: 324 IDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGF 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P+  TY+ +++  CK+G +    ++L  M+  G  P    Y  +++  C  G+ + A  
Sbjct: 384 KPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKM 443

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHN 377
            LD M+  G+ PN +T+++ +  H+
Sbjct: 444 LLDAMLNVGVAPNDITYNILLEGHS 468



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 139/291 (47%), Gaps = 4/291 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  TFS +I+ L    +      L D +  +        F  +  G  +  +   A++ F
Sbjct: 211 DVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNF 270

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M   G  P   +Y  ++  L +   LK A R    M   G++P   +   LI   CK 
Sbjct: 271 QMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCK- 329

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G M++A +I R M   G   D   +  LI+GLCR G++++A+ + ++M +    P   T
Sbjct: 330 YGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPT 389

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT +++  C+  +V    +L +EM+S G  P V TY++LM+GLCK G    A  LL  M+
Sbjct: 390 YTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAML 449

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +    PN +TY+ LL G  K G   + V+I +  K  GL  D   Y  +++
Sbjct: 450 NVGVAPNDITYNILLEGHSKHGSSVD-VDIFNSEK--GLVKDYASYTALVN 497



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 4/192 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G R D  TF+ +I           A ++  R+ +E  ++ +  F  +  G  R  R  
Sbjct: 310 ASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVH 369

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA R+   M   G +P   +Y  V+    ++  + + F+  + M+  G  P V + N L+
Sbjct: 370 DAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALM 429

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +  A  +   M N G  P+  TY  L+ G  + G   +      E   K  
Sbjct: 430 NGLCK-QGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVDVDIFNSE---KGL 485

Query: 223 SPTVVTYTSLIN 234
                +YT+L+N
Sbjct: 486 VKDYASYTALVN 497


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 216/429 (50%), Gaps = 19/429 (4%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           RH  +T    + +L +A      +  L  +       TED  ++    + R      A++
Sbjct: 52  RHHEAT----VRRLAAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALK 107

Query: 107 VFDKMKEFGC-EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            F +  + GC +P  + Y  +L  L+ EN +      Y +MR+ G+ P V + N+LI+AL
Sbjct: 108 TFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRAL 167

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C+N   +DAA K+  EM  +GC PD  ++GT+++G+C+LG++ EA+    E       P 
Sbjct: 168 CQND-RVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAET-----VPV 221

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             +Y ++++ LC    + E   +  EM  +G++PNV TY++++D  CK      A  +L 
Sbjct: 222 QASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILA 281

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+S    PN++T++ L+ G  ++GK+ +A+ +   M  +G  P    Y  +I   C IG
Sbjct: 282 RMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIG 341

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404
             + A +F + M    + PN  T+S       T+V G     D + A  ++  M++    
Sbjct: 342 DLKGALDFFNSMKRNALLPNATTYS-------TLVDGFSNAGDLDGAMLIWNEMKSSGCK 394

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            + + Y+++I   CKK    ++  ++D++++D C P+  T++ ++  L D  ++ +A  +
Sbjct: 395 PNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNV 454

Query: 465 LLLELMNKC 473
                 N C
Sbjct: 455 FHGMRRNGC 463



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 200/417 (47%), Gaps = 18/417 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++L+I  L   ++   A  +LD ++++ C   E    +I  G  ++ R        ++ 
Sbjct: 159 TYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGR-------VEEA 211

Query: 112 KEFGCEPTP--KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           + F  E  P   SY  V+  L  E ++   F     M + G+QP V +   ++ A CK +
Sbjct: 212 RGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCK-A 270

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             +  A  I   M + GCTP+  T+  L+ G    GK+++A  ++  M  +  +P+ ++Y
Sbjct: 271 RELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISY 330

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             LI GLC    ++ A+  F  M+   + PN  TYS+L+DG    G    AM +   M S
Sbjct: 331 NVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKS 390

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              +PN+V Y+ +++ LCK+    +A  ++D+M +    P+   +  +I   CD G+   
Sbjct: 391 SGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGR 450

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSL 408
           A N    M   G  PN        R +N ++ GL +   ++ AF + + M N    +  +
Sbjct: 451 ALNVFHGMRRNGCHPND-------RTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLV 503

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TY+++I C C+      +  ++  +++ G  PD  T++A++ A     K+  AA LL
Sbjct: 504 TYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLL 560



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 192/423 (45%), Gaps = 48/423 (11%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           +F         G + +  T++ ++     A + R A  +L R+    C      F ++ +
Sbjct: 241 VFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVK 300

Query: 94  GY---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           G+   G+VH   DA+ ++  M + G  P+  SY  ++  L     LK A  F+  M+   
Sbjct: 301 GFFEDGKVH---DALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNA 357

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           + P   + + L+     N+G +D A  I+ EM + GC P+   Y  +I+ LC+     +A
Sbjct: 358 LLPNATTYSTLVDGF-SNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQA 416

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           + L  +M    C P  VT+ +LI  LC    V  A+ +F  MR  G  PN  TY+ L+ G
Sbjct: 417 ESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHG 476

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           L + G    A  ++  M++     ++VTY+T++N LC+    + A+ +L RM +QG++PD
Sbjct: 477 LFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPD 536

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR 390
           A  +  II  +C  GK   AA  L +M                   N V           
Sbjct: 537 AFTFNAIIHAYCKEGKVSIAACLLGQM-------------------NAV----------- 566

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
                      +   + + Y+ LI+  C +G +  +   + +++ +G  P+E TW+ ++ 
Sbjct: 567 -----------NCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVR 615

Query: 451 ALW 453
           A++
Sbjct: 616 AIF 618


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 234/459 (50%), Gaps = 32/459 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG  H+  T ++MI+      +   A  +L +V K   +     F ++ +G     +  +
Sbjct: 117 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSE 176

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ + D+M E GC+P   +Y +++  +       LA    R M E  ++  V + + +I 
Sbjct: 177 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIID 236

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LC++ G +DAA  +F+EM  +G      TY +L+ GLC+ GK  +   L K+M ++   
Sbjct: 237 SLCRD-GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV 295

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+T+  L++   +   ++EA  L++EM ++G+ PN+ TY++LMDG C     S+A  +
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+  +  P+IVT+++L+ G C   ++ + +++   +  +GL  +A  Y  ++  FC 
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWS----------------------------LHIRI 375
            GK + A     EMV  G+ P+ +T+                             L I +
Sbjct: 416 SGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM 475

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           + T+++G+CK      A+ ++ S+  + +  + +TY+ +I+  CKKG + ++  ++ ++ 
Sbjct: 476 YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            DG  P++ T++ ++ A      +  +A+  L+E M  C
Sbjct: 536 EDGNAPNDCTYNTLIRAHLRDGDLTASAK--LIEEMKSC 572



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 208/445 (46%), Gaps = 46/445 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D +TF+ +I  L    +   A  L+DR+ +  C      + SI  G  R      A
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  KM+E   +    +Y T++  L  +  +  A   ++ M   GI+  V + N L++ 
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 165 LCK----------------------------------NSGTMDAAFKIFREMPNRGCTPD 190
           LCK                                    G +  A ++++EM  RG +P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY TL++G C   ++ EA  +   M    CSP +VT+TSLI G C  K V++ M++F 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            +  +G+  N  TYS L+ G C+ G    A EL Q M+S    P+++TY  LL+GLC  G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 311 KLQEAVEILDRMKLQGLKPDAG--LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           KL++A+EI +   LQ  K D G  +Y  II   C  GK ++A N    +   G+ PN +T
Sbjct: 453 KLEKALEIFE--DLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +++ I        GLCK        + L  M     + +  TY++LI    + GD+  SA
Sbjct: 511 YTVMI-------SGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 563

Query: 428 RIVDELVLDGCLPDEGTWSAVMTAL 452
           ++++E+   G   D  +   V+  L
Sbjct: 564 KLIEEMKSCGFSADASSIKMVIDML 588



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 194/392 (49%), Gaps = 30/392 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M      P+   +    + +    Q  L   F + +   GI   + +LN++I
Sbjct: 71  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+   T   A+ +  ++   G  PD+ T+ TLI GL   GK+ EA  L   M    C
Sbjct: 131 NCFCRCCKTC-FAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY S++NG+C+S     A+ L  +M  + V+ +VFTYS+++D LC+ GC   A+ 
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M +K  + ++VTY++L+ GLCK GK  +   +L  M  + + P+   +  ++  F 
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWS------------------LHIRIHN------- 377
             GK QEA     EM+  GI+PN +T++                  L + + N       
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 369

Query: 378 ---TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              ++++G C     +   +V+ ++  R +  +++TYS L+  FC+ G I  +  +  E+
Sbjct: 370 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM 429

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V  G LPD  T+  ++  L D  K+ +A E+ 
Sbjct: 430 VSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 461



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 148/302 (49%), Gaps = 8/302 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +F+EM      P    +    + + R  +     +  K++E    +  + T   +
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+      A  +  ++   G EP+  T+++L+ GL   G  S+A+ L+  M+    
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P++VTY++++NG+C+ G    A+++L +M+ + +K D   Y  II   C  G    A +
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
              EM   GI  + +T+       N++V+GLCK    N    +   M +R I  + +T++
Sbjct: 250 LFKEMETKGIKSSVVTY-------NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            L+  F K+G + ++  +  E++  G  P+  T++ +M     + ++ +A  +L L + N
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN 362

Query: 472 KC 473
           KC
Sbjct: 363 KC 364



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 34/268 (12%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ ++      N+   A ++LD + + KC      F S+ +GY  V R  D M+VF  +
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 394

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS-- 169
            + G      +Y  ++    +  ++KLA   ++ M   G+ P V +  +L+  LC N   
Sbjct: 395 SKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKL 454

Query: 170 --------------------------------GTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                                           G ++ A+ +F  +P +G  P+  TY  +
Sbjct: 455 EKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 514

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+GLC+ G + EA  L ++ME    +P   TY +LI    +   +  + +L EEM+S G 
Sbjct: 515 ISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGF 574

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             +  +   ++D L  G      +++L 
Sbjct: 575 SADASSIKMVIDMLLSGELDKSFLDMLS 602


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 214/423 (50%), Gaps = 16/423 (3%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLD 103
           + D   ++ +IS    AN+   A+ +LDR+ ++      +T +I +    G G++     
Sbjct: 41  KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDL--- 97

Query: 104 AMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           A++VF+++ K+  C+PT  +Y  ++   + E  +  A +    M   G++P   + NV+ 
Sbjct: 98  ALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVIT 157

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           + LCK  G +D AF+  R + +RGC PD  TY  L+  L   GK  E ++   E+ ++ C
Sbjct: 158 RGLCK-EGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGC 216

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY+ LI+ LC+   +EE++ L + M+ KG+ P+ + Y  L+   C+ G    A+E
Sbjct: 217 EPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIE 276

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L  MI     P+IV Y+T++  LCK G    AVEI  ++   G  P+   Y  ++S   
Sbjct: 277 FLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALW 336

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G    A   + +M+  GI P+ +T+       N+++  LC+    + A  +   M + 
Sbjct: 337 SSGDRYRALGMISQMLSKGIDPDVITY-------NSLISCLCRDGMVDEAIGLLADMLSG 389

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               + ++Y +++   CK   I  +  ++  ++ +GC P+E T++ ++  +       QA
Sbjct: 390 RFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQA 449

Query: 462 AEL 464
            EL
Sbjct: 450 MEL 452



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 158/316 (50%), Gaps = 11/316 (3%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           QP V     LIK    NS  +D A ++   +   G  PD + Y  +I+G C+  +I  AK
Sbjct: 7   QPDVILCTKLIKGFF-NSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIESAK 64

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE-MRSKGVEPNVFTYSSLMDG 270
            +   M+ K  SP VVT+  +I   C    ++ A+++FEE ++    +P + TY+ L++ 
Sbjct: 65  TVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEA 124

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
               G   +A++LL  M+S+   P+  TY+ +  GLCKEGK+  A E +  +  +G KPD
Sbjct: 125 YILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD 184

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              Y  ++    + GK+ E   ++ E+   G  PN +T+S+       ++  LC+     
Sbjct: 185 VITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSI-------LISSLCRDGKIE 237

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            +  +   M+ + ++ D+  Y  LI  FC++G +  +   +D ++ DG LPD   ++ +M
Sbjct: 238 ESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIM 297

Query: 450 TALWDRRKMRQAAELL 465
            AL        A E+ 
Sbjct: 298 AALCKNGNGDHAVEIF 313



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 112/251 (44%), Gaps = 45/251 (17%)

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M +K  +P+V   + L+ G        +A  ++ ++  K  +P++  Y+ +++G CK  +
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGIL-EKHGKPDVFAYNAVISGFCKANR 59

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK------------------------- 346
           ++ A  +LDRMK +G  PD   +  +I  FC  GK                         
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYT 119

Query: 347 -----------YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
                        EA   LDEM+  G+ P+  T+       N + +GLCK    +RAF+ 
Sbjct: 120 ILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTY-------NVITRGLCKEGKVDRAFEF 172

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
             ++ +R    D +TY+ L+     +G   +  + + E+   GC P+  T+S ++++L  
Sbjct: 173 VRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCR 232

Query: 455 RRKMRQAAELL 465
             K+ ++  L+
Sbjct: 233 DGKIEESVNLV 243


>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 738

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 225/448 (50%), Gaps = 44/448 (9%)

Query: 75  RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           R    +  +TED F+S+   YGR     +++++F KMKE G + T KSY  +  +++   
Sbjct: 147 RGGASRATVTEDAFVSLIDSYGRAGIVQESVKLFKKMKELGVDRTVKSYDALFKVILRRG 206

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           +  +A R+Y  M    ++P   + N+L+  +   S  +D A + + +M +RG  PD  TY
Sbjct: 207 RYMMAKRYYNAMLNESVEPTRHTYNILLWGMFL-SLRLDTAVRFYEDMKSRGILPDVVTY 265

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            TLING  R  K+ EA++LF EM+ +   P V+++T+++ G   +  +++A+++FEEM+ 
Sbjct: 266 NTLINGYFRFKKVEEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGQIDDALKVFEEMKG 325

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQ 313
            GV+PN  T+S+L+ GLC     ++A ++L  M+ +   P +   +  L++  CK G L 
Sbjct: 326 CGVKPNAVTFSTLLPGLCDAEKMAEARDVLGEMVERYIAPKDNAVFMKLMSCQCKAGDLD 385

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT----- 368
            A ++L  M    +  +AG YG +I  FC    Y +A   LD+M+   I   +       
Sbjct: 386 AAGDVLKAMIRLSIPTEAGHYGVLIENFCKANLYDKAEKLLDKMIEKEIVLRQKNAYETE 445

Query: 369 -WSLHIRIHNTVVQGLC-----------------------------------KTDPNRAF 392
            + +    +N ++  LC                                   + +P+ AF
Sbjct: 446 LFEMEPSAYNLMIGYLCEHGRTGKAETFFRQLMKKGVQDSVSFNNLICGHSKEGNPDSAF 505

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++   M  R ++ D+ +Y  LI  + +KG+   +   +D ++  G LP+   + +VM +L
Sbjct: 506 EIIKIMGRRGVARDADSYRLLIESYLRKGEPADAKTALDGMLESGHLPESSLYRSVMESL 565

Query: 453 WDRRKMRQAAELLLLELMNKCVEAEVDI 480
           +D  ++ Q A  ++  ++ K V+  +D+
Sbjct: 566 FDDGRV-QTASRVMKSMVEKGVKENMDL 592



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 165/352 (46%), Gaps = 17/352 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT---YG 195
           A +FYR +   G+        + I  +      ++ A  I  +    G +  + T   + 
Sbjct: 102 ALQFYRWVERAGLFTHTPETTLKIVQILGRYSKLNHARCILFDDTRGGASRATVTEDAFV 161

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           +LI+   R G + E+ +LFK+M+      TV +Y +L   + +      A R +  M ++
Sbjct: 162 SLIDSYGRAGIVQESVKLFKKMKELGVDRTVKSYDALFKVILRRGRYMMAKRYYNAMLNE 221

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
            VEP   TY+ L+ G+        A+   + M S+   P++VTY+TL+NG  +  K++EA
Sbjct: 222 SVEPTRHTYNILLWGMFLSLRLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVEEA 281

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
            ++   MK + + P+   +  ++  +   G+  +A    +EM   G+ PN +T+S     
Sbjct: 282 EKLFVEMKGRDIVPNVISFTTMLKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFS----- 336

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISV-DSLTYSSLITCFCKKGDIHKSARIVDEL 433
             T++ GLC  +    A  V   M  R I+  D+  +  L++C CK GD+  +  ++  +
Sbjct: 337 --TLLPGLCDAEKMAEARDVLGEMVERYIAPKDNAVFMKLMSCQCKAGDLDAAGDVLKAM 394

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQDV 485
           +    +P E     V+   + +  +   AE    +L++K +E E+ ++ ++ 
Sbjct: 395 I-RLSIPTEAGHYGVLIENFCKANLYDKAE----KLLDKMIEKEIVLRQKNA 441



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 136/304 (44%), Gaps = 31/304 (10%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           + ++I     AN +  AE LLD++      I ++I L     Y              + +
Sbjct: 406 YGVLIENFCKANLYDKAEKLLDKM------IEKEIVLRQKNAY--------------ETE 445

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS--G 170
            F  EP+  +Y  ++  L E  +   A  F+R + + G+Q  V S N LI   C +S  G
Sbjct: 446 LFEMEPS--AYNLMIGYLCEHGRTGKAETFFRQLMKKGVQDSV-SFNNLI---CGHSKEG 499

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             D+AF+I + M  RG   D+ +Y  LI    R G+  +AK     M      P    Y 
Sbjct: 500 NPDSAFEIIKIMGRRGVARDADSYRLLIESYLRKGEPADAKTALDGMLESGHLPESSLYR 559

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           S++  L     V+ A R+ + M  KGV+ N+   S +++ L   G   +A+  + +++  
Sbjct: 560 SVMESLFDDGRVQTASRVMKSMVEKGVKENMDLVSKVLEALLMRGHVEEALGRIHLLMLN 619

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P+   +  LL+ LC++ K   A+++LD +  +    D  +Y K++      GK   A
Sbjct: 620 GCEPD---FDHLLSVLCEKEKTIAALKLLDFVLERDCIIDFSIYDKVLDALLAAGKTLNA 676

Query: 351 ANFL 354
            + L
Sbjct: 677 YSIL 680



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 155/374 (41%), Gaps = 55/374 (14%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHR 100
           + G   D  T++ +I+      +   AE L   V  +  DI  ++  F ++ +GY    +
Sbjct: 255 SRGILPDVVTYNTLINGYFRFKKVEEAEKLF--VEMKGRDIVPNVISFTTMLKGYVAAGQ 312

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLN 159
             DA++VF++MK  G +P   ++ T+L  L +  ++  A      M E  I P   A   
Sbjct: 313 IDDALKVFEEMKGCGVKPNAVTFSTLLPGLCDAEKMAEARDVLGEMVERYIAPKDNAVFM 372

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-- 217
            L+   CK +G +DAA  + + M       ++  YG LI   C+     +A++L  +M  
Sbjct: 373 KLMSCQCK-AGDLDAAGDVLKAMIRLSIPTEAGHYGVLIENFCKANLYDKAEKLLDKMIE 431

Query: 218 -----------ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
                      ET+        Y  +I  LC+     +A   F ++  KGV+ +V ++++
Sbjct: 432 KEIVLRQKNAYETELFEMEPSAYNLMIGYLCEHGRTGKAETFFRQLMKKGVQDSV-SFNN 490

Query: 267 LMDGLCKGGCSSQAMELLQMM-----------------------------------ISKR 291
           L+ G  K G    A E++++M                                   +   
Sbjct: 491 LICGHSKEGNPDSAFEIIKIMGRRGVARDADSYRLLIESYLRKGEPADAKTALDGMLESG 550

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           H P    Y +++  L  +G++Q A  ++  M  +G+K +  L  K++      G  +EA 
Sbjct: 551 HLPESSLYRSVMESLFDDGRVQTASRVMKSMVEKGVKENMDLVSKVLEALLMRGHVEEAL 610

Query: 352 NFLDEMVLGGITPN 365
             +  ++L G  P+
Sbjct: 611 GRIHLLMLNGCEPD 624


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/412 (29%), Positives = 210/412 (50%), Gaps = 19/412 (4%)

Query: 62  SANQFRPAEDLLDRVNKE------KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF- 114
           +++ FR  +D L   N         C I  +  LS      R+ +  DA+    K  E  
Sbjct: 64  ASSSFRNIDDALASFNHMLHRKPLPCIIQFNKLLS---AIVRMRQYYDAVISLSKQMELA 120

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           G  P   +   ++        + L F     + ++G+QP + +   LI  LCK +G    
Sbjct: 121 GLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCK-AGEFAQ 179

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A ++F +M  RGC PD YTY T+INGLC++G+   A  L K+M    C P VVTY++LI+
Sbjct: 180 ALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLID 239

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
            LC+ + V EA+ +F  M++KG+ P V +Y+SL+ GLC      +A  +L  M S    P
Sbjct: 240 SLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMP 299

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           +IVT+S L++  CKEG + EA  +L  M   G++P+   Y  ++  +    +  EA    
Sbjct: 300 DIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLF 359

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
           D M+  G  P+  ++S+       ++ G C     + A Q++  M ++ ++ ++++Y++L
Sbjct: 360 DVMITRGCKPDVFSYSI-------LINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTL 412

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I  FC+ G + ++  +  ++  +G LPD  T+S ++     +  + +A  L 
Sbjct: 413 IHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLF 464



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 207/415 (49%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I+ L  A +F  A +L D +    C      + +I  G  ++     A  +  KM
Sbjct: 163 TFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKM 222

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E GC+P   +Y T++  L ++  +  A   + +M+  GI P V S   LI+ LC  S  
Sbjct: 223 GEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRW 282

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            +A+  +  EM +    PD  T+  LI+  C+ G + EA+ + K M      P V+TY S
Sbjct: 283 KEAS-AMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNS 341

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++G      V EA +LF+ M ++G +P+VF+YS L++G C      +A +L   MI + 
Sbjct: 342 LMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQG 401

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN V+Y+TL++  C+ GKL+EA E+   M   G  PD   Y  ++  FC  G   +A 
Sbjct: 402 LTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAF 461

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
                M    + PN + +++       ++  +CK+ + N A +++  +    +  D   Y
Sbjct: 462 RLFRAMQGTYLKPNLVMYTI-------LIDSMCKSGNLNHARKLFSELFVHGLQPDVQIY 514

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I   CK+G + ++     ++  DGC P+E +++ ++      +   +A +L+
Sbjct: 515 TTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLI 569



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 200/434 (46%), Gaps = 45/434 (10%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T IT   ++  +    +  +AL +FD   A    G + D  T++ +I+ L    +   A 
Sbjct: 160 TIITFTTLINGLCKAGEFAQALELFDDMVAR---GCQPDVYTYTTIINGLCKMGETAAAA 216

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            L+ ++ +  C      + ++     +     +A+ +F  MK  G  PT  SY +++  L
Sbjct: 217 GLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGL 276

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA---------------- 174
              ++ K A      M  + I P + + ++LI   CK    ++A                
Sbjct: 277 CSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNV 336

Query: 175 ------------------AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
                             A K+F  M  RGC PD ++Y  LING C + +I EAK+LF E
Sbjct: 337 ITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNE 396

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +  +P  V+YT+LI+  CQ   + EA  LF++M + G  P++ TYS L++G CK G 
Sbjct: 397 MIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGY 456

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A  L + M     +PN+V Y+ L++ +CK G L  A ++   + + GL+PD  +Y  
Sbjct: 457 LGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTT 516

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVY 395
           II+  C  G   EA     +M   G  PN  ++       N +++G  +  D +RA Q+ 
Sbjct: 517 IINGLCKEGLLDEALEAFRKMEEDGCPPNEFSY-------NVIIRGFLQHKDESRAVQLI 569

Query: 396 LSMRNRSISVDSLT 409
             MR++    D  T
Sbjct: 570 GEMRDKGFVADEGT 583



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 158/304 (51%), Gaps = 9/304 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK-ELFKEMETKACSPTVVTYT 230
           +D A   F  M +R   P    +  L++ + R+ + Y+A   L K+ME    SP   T  
Sbjct: 71  IDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLN 130

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN  C  + V+    +  ++   G++P + T+++L++GLCK G  +QA+EL   M+++
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVAR 190

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +P++ TY+T++NGLCK G+   A  ++ +M   G +PD   Y  +I   C      EA
Sbjct: 191 GCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEA 250

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
            +    M   GI+P  ++++       +++QGLC     +     L+ M + +I  D +T
Sbjct: 251 LDIFSYMKAKGISPTVVSYT-------SLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVT 303

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           +S LI  FCK+G++ ++  ++  +   G  P+  T++++M     + ++ +A +L  + +
Sbjct: 304 FSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMI 363

Query: 470 MNKC 473
              C
Sbjct: 364 TRGC 367


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 206/407 (50%), Gaps = 10/407 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D S  +  I  LV  N+   A   L+R+   + +     +  + +GY  +HR  DA
Sbjct: 262 GIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDA 321

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLK-LAFRFYRHMREIGIQPCVASLNVLIK 163
           M +  +M   GC P   SY TV+  L +E ++K +     + +++  + P   + N  + 
Sbjct: 322 MELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVH 381

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K+ G  D A +  RE   R    D   Y  +++  CR G++ +AKE+  EM +K C 
Sbjct: 382 MLSKH-GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCI 440

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTYTS+INGLCQ + V++A ++  +M   G +PN  +Y++L++GLCK G S +A E+
Sbjct: 441 PDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREM 500

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           + M       PN +TYS L++G  +EGK  EA +++  M  +G  P       +I   C 
Sbjct: 501 MNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQ 560

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
             K  EA  F+++ +  G   N + ++       TV+ G C K D   A  +   M   +
Sbjct: 561 EEKVDEAKRFMEQCLNNGCAVNVVNFT-------TVIHGFCQKDDLEAALSLLDDMYLSN 613

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
              D +TY+++I    KKG I ++ ++  +++  G +P   T+  V+
Sbjct: 614 KHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVI 660



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 202/409 (49%), Gaps = 45/409 (11%)

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           Y R  +  +AMRV   M++ G EP      T + +LV  N+L  A RF   M+ + I+P 
Sbjct: 242 YSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPN 301

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK--- 211
           V + N LIK  C +   ++ A ++  EMP +GC+PD  +Y T++  LC+  +I E +   
Sbjct: 302 VITYNCLIKGYC-DLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 360

Query: 212 ---------------------------------ELFKEMETKACSPTVVTYTSLINGLCQ 238
                                            E  +E E +      V Y+++++  C+
Sbjct: 361 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 420

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
              +++A  +  EM SKG  P+V TY+S+++GLC+     QA ++L+ M     +PN V+
Sbjct: 421 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVS 480

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y+ LLNGLCK G   EA E+++  +     P+A  Y  ++  F   GK  EA + + EM+
Sbjct: 481 YTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 540

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCF 417
             G  P  +         N ++Q LC+ +  + A +      N   +V+ + ++++I  F
Sbjct: 541 KKGFFPTPVEI-------NLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGF 593

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           C+K D+  +  ++D++ L    PD  T++ ++ AL  + ++ +A +L +
Sbjct: 594 CQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAM 642



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 214/461 (46%), Gaps = 23/461 (4%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           KI+   V+  +  EK + +  ++ +    +  +    D  T++  +  L        A +
Sbjct: 337 KISYYTVMGFLCKEKRIKEVRLLMEKMLKD--SNLLPDQVTYNTFVHMLSKHGHGDEALE 394

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L    + +  + +  + +I   + R  R   A  + ++M   GC P   +Y +V+  L 
Sbjct: 395 FLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLC 454

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG----C 187
           +E ++  A +  R M + G +P   S   L+  LCKN  +++A     REM N       
Sbjct: 455 QERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEA-----REMMNMSEEDWW 509

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            P++ TY  L++G  R GK  EA +L +EM  K   PT V    LI  LCQ + V+EA R
Sbjct: 510 IPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKR 569

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ-MMISKRHRPNIVTYSTLLNGL 306
             E+  + G   NV  +++++ G C+      A+ LL  M +S +H P++VTY+T+++ L
Sbjct: 570 FMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKH-PDVVTYTTIIDAL 628

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
            K+G+++EA ++  +M   GL P    Y  +I  +C +G+ ++    L++M         
Sbjct: 629 GKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKM--------- 679

Query: 367 LTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           L+       +N V++ LC   +  +A+++   +   +  +D+ T   LI  +  KG    
Sbjct: 680 LSRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGIPLM 739

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           S  +   +     +PD      V   L    K  +A +L+L
Sbjct: 740 SYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLIL 780



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 46/288 (15%)

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           +R  P R   P+++ Y  ++    R GK+  A  +   M+     P +    + I+ L  
Sbjct: 224 YRHDPIR--RPEAFGY--VMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVM 279

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
              +++A+R  E M+   +EPNV TY+ L+ G C       AMEL+  M  K   P+ ++
Sbjct: 280 GNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKIS 339

Query: 299 YSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           Y T++  LCKE +++E   ++++M K   L PD   Y   +      G   EA  FL E 
Sbjct: 340 YYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLRE- 398

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
                                                      R   VD + YS+++  F
Sbjct: 399 ----------------------------------------AEERRFRVDKVGYSAIVHSF 418

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           C++G + K+  IV+E+   GC+PD  T+++V+  L   RK+ QA ++L
Sbjct: 419 CREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKML 466



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 161/354 (45%), Gaps = 9/354 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+  +  E+ V++A  +       Y +G + +  +++ +++ L        A ++
Sbjct: 444 VTYTSVINGLCQERKVDQAKKMLRQM---YKHGCKPNTVSYTALLNGLCKNGNSLEAREM 500

Query: 73  LDRVNKEKCDITEDIFLSIC-RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           ++ +++E   I   I  S+   G+ R  +  +A  +  +M + G  PTP     ++  L 
Sbjct: 501 MN-MSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLC 559

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +E ++  A RF       G    V +   +I   C+    ++AA  +  +M      PD 
Sbjct: 560 QEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKD-DLEAALSLLDDMYLSNKHPDV 618

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY T+I+ L + G+I EA +L  +M      PT VTY ++I+  C+   VE+ ++L E+
Sbjct: 619 VTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEK 678

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M S+  +     Y+ +++ LC  G   QA +LL  ++    + +  T   L+     +G 
Sbjct: 679 MLSR--QECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGI 736

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV-LGGITP 364
              +  +  RM  + L PD  L  K+       GK +EA   +   V  G I+P
Sbjct: 737 PLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVERGRISP 790


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 216/439 (49%), Gaps = 25/439 (5%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T +++++ L + N+ R        + +         + ++ +G    HR  +
Sbjct: 98  SGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISE 157

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM------REIGIQPCVAS 157
           A R+F +M++ GC P   +Y T++  L     + +A + ++ M       EI  +P V +
Sbjct: 158 ATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVIT 217

Query: 158 LNVLIKALCKNSGTMDAAFKIFREM------PN----RGCTPDSYTYGTLINGLCRLGKI 207
            N+++  LCK  G  D A ++F EM      PN    +G  PD  T+  LI+ LC+ GK+
Sbjct: 218 YNIIVDGLCK-VGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKV 276

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EAK+L   M      P +VTY SLI G C    +  A  LF  M SKG EP+V +Y+ L
Sbjct: 277 IEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVL 336

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++G  K     +AM+L   M+    RPN++TY +LL G+   GK+ +A ++   MK  G+
Sbjct: 337 INGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGI 396

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
             ++  YG  +   C      EA     E+           + L I   N ++ GLCK  
Sbjct: 397 AENSYTYGIFLDGLCKNDCLFEAMKLFTEL-------KSSNFKLEIENLNCLIDGLCKAG 449

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
               A++++  + N     + +TY+ +I  FC++G + K+  ++ ++  +GC PD  T++
Sbjct: 450 KLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYN 509

Query: 447 AVMTALWDRRKMRQAAELL 465
            +M   ++  K+ +  +LL
Sbjct: 510 TLMRGFYESNKLEEVVQLL 528



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 176/344 (51%), Gaps = 25/344 (7%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A  F+  M      P ++S N L+  L K        F ++ +M   G + D  T   L+
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAK-IKHYSQVFSLYNQMRLSGLSSDRCTLNILL 111

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           N LC + ++ E    F  +  +  SP +VTY +LI GLC    + EA RLF  M+  G  
Sbjct: 112 NCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCT 171

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR------PNIVTYSTLLNGLCKEGKL 312
           P+V TY +L+ GLC  G  + A++L Q M++   R      PN++TY+ +++GLCK G+ 
Sbjct: 172 PDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRE 231

Query: 313 QEAVEILDRMKL----------QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
            EA ++ + MK           QGL+PD   +  +I   C  GK  EA   L  M+  GI
Sbjct: 232 DEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGI 291

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P+ +T+       N++++G C   D N A ++++SM ++    D ++Y+ LI  + K  
Sbjct: 292 VPDLVTY-------NSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTL 344

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + ++ ++ +E++L G  P+  T+ +++  ++   K+  A +L 
Sbjct: 345 KVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLF 388



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 181/340 (53%), Gaps = 19/340 (5%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMK----------EFGCEPTPKSYITVLAILVEENQLKLAF 140
           I  G  +V R  +A ++F++MK          + G +P   ++  ++  L +E ++  A 
Sbjct: 221 IVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAK 280

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           +    M E GI P + + N LI+  C   G +++A ++F  MP++GC PD  +Y  LING
Sbjct: 281 KLLGVMIESGIVPDLVTYNSLIEGFCM-VGDLNSARELFVSMPSKGCEPDVISYNVLING 339

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
             +  K+ EA +L+ EM      P V+TY SL+ G+  +  V++A +LF  M++ G+  N
Sbjct: 340 YSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAEN 399

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
            +TY   +DGLCK  C  +AM+L   + S   +  I   + L++GLCK GKL+ A E+ +
Sbjct: 400 SYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFE 459

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           ++  +G +P+   Y  +I  FC  G+  +A   + +M   G TP+ +T+       NT++
Sbjct: 460 KLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY-------NTLM 512

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           +G  +++      Q+   M  + +S D++T S ++    K
Sbjct: 513 RGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSK 552



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 178/379 (46%), Gaps = 25/379 (6%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+  F  M      P+  S+  +L+ L +       F  Y  MR  G+     +LN+L+ 
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLN 112

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC N   +   F  F  +  RG +P+  TY TLI GLC   +I EA  LF  M+   C+
Sbjct: 113 CLC-NVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCT 171

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK------GVEPNVFTYSSLMDGLCKGGCS 277
           P VVTY +LI GLC + ++  A++L +EM +         +PNV TY+ ++DGLCK G  
Sbjct: 172 PDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRE 231

Query: 278 SQAMELLQ----------MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
            +A +L +           M+ +  +P++VT++ L++ LCKEGK+ EA ++L  M   G+
Sbjct: 232 DEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGI 291

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT- 386
            PD   Y  +I  FC +G    A      M   G  P+ +++       N ++ G  KT 
Sbjct: 292 VPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY-------NVLINGYSKTL 344

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
               A ++Y  M       + +TY SL+      G +  + ++   +   G   +  T+ 
Sbjct: 345 KVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG 404

Query: 447 AVMTALWDRRKMRQAAELL 465
             +  L     + +A +L 
Sbjct: 405 IFLDGLCKNDCLFEAMKLF 423



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 165/312 (52%), Gaps = 5/312 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G + D  TF+++I  L    +   A+ LL  + +    I  D+  + S+  G+  V    
Sbjct: 255 GLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES--GIVPDLVTYNSLIEGFCMVGDLN 312

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  +F  M   GCEP   SY  ++    +  +++ A + Y  M  +G +P V + + L+
Sbjct: 313 SARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 372

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K +   +G +D A K+F  M   G   +SYTYG  ++GLC+   ++EA +LF E+++   
Sbjct: 373 KGIFL-AGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNF 431

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              +     LI+GLC++  +E A  LFE++ ++G EPNV TY+ ++ G C+ G   +A  
Sbjct: 432 KLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANV 491

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L+Q M +    P+I+TY+TL+ G  +  KL+E V++L RM  + + PDA     ++    
Sbjct: 492 LIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLS 551

Query: 343 DIGKYQEAANFL 354
              KYQE  + L
Sbjct: 552 KDEKYQECLHLL 563



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 137/311 (44%), Gaps = 13/311 (4%)

Query: 166 CKNSG-TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           CK    T   A   F  M     TP   ++  L++GL ++    +   L+ +M     S 
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              T   L+N LC    + E    F  +  +G  PN+ TY++L+ GLC     S+A  L 
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKL-------QEAVEILDRMKLQGLKPDAGLYGKI 337
             M      P++VTY TL+ GLC  G +       QE +  + R ++   KP+   Y  I
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEIN-CKPNVITYNII 221

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLT---WSLHIRIHNTVVQGLCKTDPN-RAFQ 393
           +   C +G+  EA    +EM   G+ PN +        +   N ++  LCK      A +
Sbjct: 222 VDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKK 281

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +   M    I  D +TY+SLI  FC  GD++ +  +   +   GC PD  +++ ++    
Sbjct: 282 LLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYS 341

Query: 454 DRRKMRQAAEL 464
              K+ +A +L
Sbjct: 342 KTLKVEEAMKL 352



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 133/278 (47%), Gaps = 14/278 (5%)

Query: 202 CRLGKIY--EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           C+ G +    A   F  M     +P++ ++  L++GL + K   +   L+ +MR  G+  
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +  T + L++ LC      +       ++ + + PNIVTY+TL+ GLC E ++ EA  + 
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
            RM+  G  PD   YG +I   C  G    A     EM L  I+   +    ++  +N +
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEM-LNDISRYEINCKPNVITYNII 221

Query: 380 VQGLCKTD-PNRAFQVYLSMR----------NRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           V GLCK    + A Q++  M+          ++ +  D +T++ LI   CK+G + ++ +
Sbjct: 222 VDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKK 281

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           ++  ++  G +PD  T+++++        +  A EL +
Sbjct: 282 LLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFV 319


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 224/485 (46%), Gaps = 78/485 (16%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S +I  LV   +   +  +L+ +    C+     F  + +G+ R +    A  V+  M
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---- 167
            E G +P   SY  ++  L +  +L  + +    M   G  P + + + L++AL K    
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 168 ------------------------------NSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                                          +G +  A + F++MP  GC P+   Y  L
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++GLC  G++ +A  LF EM++ +CSP VVTY +L++ +C+++ VEE  +LFE MR+ G 
Sbjct: 192 LHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGY 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PNV T+S+L+ GLC+ G   +A+E+   M+    +PN  TY+TL++GLC+  K+ +A E
Sbjct: 252 VPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARE 311

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG-GITPNRLTWSLHIRIH 376
           + ++M    + PDA  Y  +I+ +C  G   EA     EM  G G+ P  +T+       
Sbjct: 312 LFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTF------- 364

Query: 377 NTVVQGLCK------------------------------------TDPNRAFQVYLSMRN 400
           NT++ G CK                                    T  + A +VY  MR 
Sbjct: 365 NTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMRE 424

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +   +D ++  S +   CK G+I ++  + +     G +P+  T+  +  +L    ++  
Sbjct: 425 KKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVED 484

Query: 461 AAELL 465
           A +L+
Sbjct: 485 AQKLM 489



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 183/365 (50%), Gaps = 10/365 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRH-DNSTFSLMISKLVSANQFRP 68
           S +  S+ V  L +A + V+ A  +FD    E   G  H D   F  +I  L  A + + 
Sbjct: 114 SMQAYSSLVRALAKARR-VDHASSLFD----EMIRGGHHPDRLMFYELILGLCQAGKVKD 168

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           A +   ++ K  C     ++  +  G     +   A  +F +MK   C P   +Y T+L 
Sbjct: 169 ASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLD 228

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            + +  +++   + +  MR  G  P V + + LI  LC+ +G ++ A ++F  M   GC 
Sbjct: 229 AVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCR-TGELEKALEVFGSMLEAGCK 287

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC-SPTVVTYTSLINGLCQSKSVEEAMR 247
           P+ YTY TLI+GLCR  K+ +A+ELF++M T+AC  P  V Y SLI G C+  S++EA +
Sbjct: 288 PNKYTYTTLISGLCRAEKVIQARELFEKM-TQACIPPDAVAYNSLIAGYCKRGSMDEAEK 346

Query: 248 LFEEMRS-KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
           L+ EM    G++P + T+++L+DG CK G   +A EL+  M +K    +  TY  L+ GL
Sbjct: 347 LYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGL 406

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
            +  KL EA+E+  +M+ +    D       +   C  G   +A    +     G  PN 
Sbjct: 407 SRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNP 466

Query: 367 LTWSL 371
            T+ +
Sbjct: 467 ETFRI 471



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 166/321 (51%), Gaps = 9/321 (2%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           MR+  I   V + + +IK+L K +   + ++K+  EM   GC PD + +  ++ G  R  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKP-EESYKVLEEMMAAGCNPDVFAFNGVMQGFARSN 59

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + +A+E+++ M      P  V+Y  LI+GL +   ++E++++  EM  +G  P++  YS
Sbjct: 60  NMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYS 119

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           SL+  L K      A  L   MI   H P+ + +  L+ GLC+ GK+++A E   +M   
Sbjct: 120 SLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKH 179

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G +P+  +Y  ++   C  G+ ++A     EM     +P+ +T+       NT++  +CK
Sbjct: 180 GCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTY-------NTLLDAVCK 232

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
                   +++ +MR      + +T+S+LI   C+ G++ K+  +   ++  GC P++ T
Sbjct: 233 ARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYT 292

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           ++ +++ L    K+ QA EL 
Sbjct: 293 YTTLISGLCRAEKVIQARELF 313



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 2/237 (0%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F ++  G  R      A+ VF  M E GC+P   +Y T+++ L    ++  A   +  M 
Sbjct: 258 FSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMT 317

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN-RGCTPDSYTYGTLINGLCRLGK 206
           +  I P   + N LI   CK  G+MD A K++REM    G  P   T+ TLI+G C+LGK
Sbjct: 318 QACIPPDAVAYNSLIAGYCKR-GSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGK 376

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A EL  EM TK  +    TY  LI GL ++  ++EA+ ++++MR K    +  +  S
Sbjct: 377 LGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVS 436

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            + GLCK G   QA  + +        PN  T+  L   L K G++++A ++++  K
Sbjct: 437 FVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAK 493


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 235/494 (47%), Gaps = 66/494 (13%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           +K T  Q LQLIR      KAL  F    A+   GF H+  ++ LMI  L  +     A 
Sbjct: 187 SKTTVLQTLQLIRTPA---KALHFFRWVEAK---GFTHNEQSYFLMIEILGRSRNLNAAR 240

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           + +  + K+                       ++++VF  MKE G  P+  ++ ++L+I+
Sbjct: 241 NFVFSIEKKSGGA-------------------ESIKVFKTMKEIGVSPSVVTFNSLLSIV 281

Query: 131 VEENQLKLAFRFYRHMREI-GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           ++  +  +A + +  M +  G+ P   + N+LI+  C NS  +D  F  F+EM    C P
Sbjct: 282 LKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNS-MVDEGFWFFKEMSRFKCDP 340

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEEAMR 247
           D  TY TL++GLCR GK+  A  + K M  K+   SP VVTYT+LI G C  + + EA+ 
Sbjct: 341 DVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALS 400

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR-HRPNIVTYSTLLNGL 306
           L  EM S+G++PN  TY++L+ GLC+     +  E+L+ M+      P+  T +TL+   
Sbjct: 401 LLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAH 460

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM--------- 357
           C  GKL+EA  + ++M    ++PD+  Y  ++   C  G ++ A  F DE+         
Sbjct: 461 CTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHD 520

Query: 358 -----VLGGITP--------------NRLTWSLHIR------IHNTVVQGLCKTD-PNRA 391
                ++    P               R+   L  R       + T++ G C+   P   
Sbjct: 521 VGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAG 580

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           F + + M  R    D+ TY  +I    KKGD   + + +++++    LP    + +++ A
Sbjct: 581 FDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAA 640

Query: 452 LWDR-RKMRQAAEL 464
           L ++ R++RQ  +L
Sbjct: 641 LVEKERRIRQNIDL 654



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 180/418 (43%), Gaps = 71/418 (16%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D  T++ ++  L  A + + A +++  + K+  +++ ++  + ++ RGY       +A+ 
Sbjct: 341 DVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALS 400

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQL-KLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           +  +M   G +P   +Y T++  L E  +L K+       + + G  P   +LN LIKA 
Sbjct: 401 LLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAH 460

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK----- 220
           C   G ++ AF +F +M      PDS TY  L+  LC+ G    A+E F E+  K     
Sbjct: 461 C-TMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLH 519

Query: 221 --ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE-------------------- 258
              C P V  Y  +   LC +   ++A R+F ++  +G +                    
Sbjct: 520 DVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEA 579

Query: 259 --------------PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
                         P+  TY  ++DGL K G    A + L+ M+   H P    + ++L 
Sbjct: 580 GFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILA 639

Query: 305 GLC-KEGKLQE-------AVEILDRMKLQ-------GLKPDAGLYGK---IISCFCDIGK 346
            L  KE ++++        V +L +  LQ       GL  + G   K   ++S  C   K
Sbjct: 640 ALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEELVSFLCQSRK 699

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
             EA     +M+L  +   +   S+ I + +TV+ GLCK    + AF +Y  +  + +
Sbjct: 700 LLEA----QKMLLFSLEKRQ---SVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGM 750



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 126/296 (42%), Gaps = 59/296 (19%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T   A   FR +  +G T +  +Y  +I  L R   +  A+     +E K+         
Sbjct: 200 TPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGG------- 252

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL-QMMIS 289
                        E++++F+ M+  GV P+V T++SL+  + K G +S A +L  +M+ +
Sbjct: 253 ------------AESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDT 300

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
               P+  T++ L+ G C    + E       M      PD   Y  ++   C  GK   
Sbjct: 301 YGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGK--- 357

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT 409
                                  ++I + VV+G+ K  PN             +S + +T
Sbjct: 358 -----------------------VKIAHNVVKGMVKKSPN-------------LSPNVVT 381

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y++LI  +C K D+ ++  ++ E+V  G  P++ T++ ++  L + +K+ +  E+L
Sbjct: 382 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEIL 437



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 160/392 (40%), Gaps = 71/392 (18%)

Query: 3   VKTMFKWSTKITSAQVL--QLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMI 57
           VK M K S  ++   V    LIR    ++D+ +AL +     +    G + +  T++ +I
Sbjct: 365 VKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSR---GLKPNKITYNTLI 421

Query: 58  SKLVSANQFRPAEDLLDRVNKEKCDITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGC 116
             L  A +    +++L+ +  +   I +   L ++ + +  + +  +A  VF+KM E   
Sbjct: 422 QGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRV 481

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMRE-------IGIQPCVASLNVLIKALCKNS 169
           +P   +Y  ++  L +    + A  F+  + E       +G +P VA+ N + + LC N 
Sbjct: 482 QPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSN- 540

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G    A ++FR++  RG T D  +Y TLI G CR G      +L   M  +   P   TY
Sbjct: 541 GKTKKAERVFRQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETY 599

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC----------------- 272
             +I+GL +      A +  E+M      P    + S++  L                  
Sbjct: 600 GLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKERRIRQNIDLSTHTV 659

Query: 273 ----KGG----------------------------CSS----QAMELLQMMISKRHRPNI 296
               K G                            C S    +A ++L   + KR   +I
Sbjct: 660 RLLYKSGLQDKAFMTIGLLYENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDI 719

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
              ST+++GLCK  K+ EA  +   +  +G++
Sbjct: 720 DMCSTVISGLCKAHKVSEAFALYYELVEKGMQ 751


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 210/404 (51%), Gaps = 13/404 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLD-AMRVF 108
           TF+ +I+ L    + R AE +L ++ +   D++ D+F   S+  G+ R +R LD A  VF
Sbjct: 200 TFNTLINILSKKGKVREAELILSQIFQY--DLSPDVFTYTSLILGHCR-NRNLDLAFGVF 256

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M + GC+P   +Y T++  L  E ++  A      M E GI+P V +  + I ALC  
Sbjct: 257 DRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAI 316

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
               +A   + R M  RGC P+  TY  LI+GL RLGK+  A  L+ +M  +   P  VT
Sbjct: 317 EHEEEAIELVAR-MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LIN LC       A+++F  M   G   N  TY+ ++ GLC GG   +AM L + M+
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 435

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                P +VTY+TL+NG   +G +  A  +LD MK  G +PD   Y +++S F   GK +
Sbjct: 436 KMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLE 495

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL 408
            A+ +  EMV  G+ PN ++++  I  H+           + A  +   M     + +  
Sbjct: 496 SASFYFQEMVECGLNPNPVSYTALIDGHSK------DGKVDIALSLLKRMEEMGCNPNVE 549

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +Y+++I    K+    ++ +I D++V  G LP+  T++ ++  L
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGL 593



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 130/462 (28%), Positives = 225/462 (48%), Gaps = 26/462 (5%)

Query: 2   GVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV 61
           G   + + S ++ +  V +++   KD    +  F   +      ++H+ + F  M+++LV
Sbjct: 62  GSSELKQLSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPF--YKHNMNCFISMLNRLV 119

Query: 62  SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
               F PA+ +  R+          + +  CR    + R  D +     M   G   +  
Sbjct: 120 RDRVFAPADHI--RI----------LMIKACRNEEEIRRVADFLNEISGM---GFGFSLY 164

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           S  T+L  L +   ++ A   Y+ M   GIQP + + N LI  L K     +A   I  +
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAEL-ILSQ 223

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           +     +PD +TY +LI G CR   +  A  +F  M  + C P  VTY++LINGLC    
Sbjct: 224 IFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGR 283

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V+EA+ + EEM  KG+EP V+TY+  +  LC      +A+EL+  M  +  RPN+ TY+ 
Sbjct: 284 VDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 343

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L++GL + GKL+ A+ +  +M  +GL P+   Y  +I+  C  G++  A      M   G
Sbjct: 344 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403

Query: 362 ITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
              N  T+       N +++GLC   D  +A  ++  M         +TY++LI  +  K
Sbjct: 404 SLANTQTY-------NEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTK 456

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           G+++ +AR++D +  +GC PDE T++ +++      K+  A+
Sbjct: 457 GNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESAS 498



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 211/426 (49%), Gaps = 21/426 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE----KCDITEDIFLSICRGYGRVHR 100
           G   +  T++ +I++L    +F  A  +   +             +I   +C G G + +
Sbjct: 368 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLG-GDIEK 426

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              AM +F+KM + G  PT  +Y T++   + +  +  A R    M+E G +P   + N 
Sbjct: 427 ---AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 483

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+    K  G +++A   F+EM   G  P+  +Y  LI+G  + GK+  A  L K ME  
Sbjct: 484 LVSGFSK-WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEM 542

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C+P V +Y ++INGL +     EA ++ ++M  +G+ PNV TY++L+DGLC+ G +  A
Sbjct: 543 GCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFA 602

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ++   M  ++  PN+ TYS+L+ GLC+EGK  EA    +RM   G +P    Y  ++S 
Sbjct: 603 FKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSG 658

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
            C  G++ EA   + +M   G  P+R        I+ +++   CK  + + A +++ S+ 
Sbjct: 659 LCRKGRFYEAEQLVKDMKERGFCPDR-------EIYYSLLIAHCKNLEVDHALKIFHSIE 711

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            +   +    Y +LI   CK G + ++  + D ++      DE  W+ ++  L    ++ 
Sbjct: 712 AKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELD 771

Query: 460 QAAELL 465
              +LL
Sbjct: 772 LCMKLL 777



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 178/359 (49%), Gaps = 15/359 (4%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+ KA+V+F+        G      T++ +I+  ++      A  LLD + +  C+  E 
Sbjct: 423 DIEKAMVLFEKMLKM---GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEW 479

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  +  G+ +  +   A   F +M E G  P P SY  ++    ++ ++ +A    + M
Sbjct: 480 TYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRM 539

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E+G  P V S N +I  L K +   +A  KI  +M  +G  P+  TY TLI+GLCR G+
Sbjct: 540 EEMGCNPNVESYNAVINGLSKENRFSEAE-KICDKMVEQGLLPNVITYTTLIDGLCRNGR 598

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
              A ++F +ME + C P + TY+SLI GLCQ    +EA    E M   G EP + TYS+
Sbjct: 599 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYST 654

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+ GLC+ G   +A +L++ M  +   P+   Y +LL   CK  ++  A++I   ++ +G
Sbjct: 655 LVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKG 714

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            +    +Y  +I   C  G+ +EA    D M+      + + W++       +V GL K
Sbjct: 715 FQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTV-------LVDGLLK 766



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 169/359 (47%), Gaps = 8/359 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T   ++     + +VN A  + D       NG   D  T++ ++S      +   A 
Sbjct: 442 TVVTYNTLINGYLTKGNVNNAARLLDLMKE---NGCEPDEWTYNELVSGFSKWGKLESAS 498

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
                + +   +     + ++  G+ +  +   A+ +  +M+E GC P  +SY  V+  L
Sbjct: 499 FYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGL 558

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
            +EN+   A +    M E G+ P V +   LI  LC+N G    AFKIF +M  R C P+
Sbjct: 559 SKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRN-GRTQFAFKIFHDMEKRKCLPN 617

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YTY +LI GLC+ GK  EA+     M    C PT+ TY++L++GLC+     EA +L +
Sbjct: 618 LYTYSSLIYGLCQEGKADEAER----MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVK 673

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M+ +G  P+   Y SL+   CK      A+++   + +K  + ++  Y  L+  LCK G
Sbjct: 674 DMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAG 733

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           +++EA  + D M  +    D  ++  ++      G+       L  M     TPN  T+
Sbjct: 734 QVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTY 792


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 222/455 (48%), Gaps = 31/455 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  T+  ++  L    +F   E++++ + +     +E    ++  G  +      A
Sbjct: 280 GLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSA 339

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + +K+K+FG  P+   Y  ++  + ++ +L  A   + +M   G+ P   + ++LI +
Sbjct: 340 FDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDS 399

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +D A     +M   G     Y Y +LI+G C+LGK+  AK LF EM      P
Sbjct: 400 FCKR-GKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKP 458

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV YTSLI+G C+   +  A RL+ EM  KG+ PN +T+++L+ GLC     ++A +L 
Sbjct: 459 NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLF 518

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+     PN VTY+ L+ G CKEG    A E+LD M  +GL PD   Y  +IS  C  
Sbjct: 519 GEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCST 578

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWS--LH--------------------------IRIH 376
           G+  EA  F++++       N + +S  LH                          +  +
Sbjct: 579 GRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCY 638

Query: 377 NTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           + ++ G+ +    R+    L  M ++ +  D++ Y+++I    K G++  +  + D +V 
Sbjct: 639 SVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVS 698

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +GCLP+  T++A++  L  +  +   AELL  E++
Sbjct: 699 EGCLPNVVTYTALINGLC-KIGLMDKAELLCREML 732



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 216/440 (49%), Gaps = 29/440 (6%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           +S +IS      + R A+ L D +          I+ S+  GY +     +A R++ +M 
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMT 487

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G  P   ++  +++ L   N++  A + +  M E  + P   + NVLI+  CK   T+
Sbjct: 488 GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTV 547

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
             AF++  EM  +G  PD+YTY  LI+GLC  G++ EA+E   +++ +      + +++L
Sbjct: 548 -RAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSAL 606

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           ++G C+   +++A+    EM  +GV  ++  YS L+ G+ +       ++LL+ M  +  
Sbjct: 607 LHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGL 666

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           RP+ V Y+T+++   K G L+ A  + D M  +G  P+   Y  +I+  C IG   +A  
Sbjct: 667 RPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAEL 726

Query: 353 FLDEMVLGGITPNRLTWSLH-------------IRIH--------------NTVVQGLCK 385
              EM+     PN+ T++               I++H              N +++G CK
Sbjct: 727 LCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCK 786

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
                 A +V ++M +  IS D ++YS++I  +C++GD+ ++ ++ + ++  G  PD   
Sbjct: 787 LGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVA 846

Query: 445 WSAVMTALWDRRKMRQAAEL 464
           ++ ++       ++ +A EL
Sbjct: 847 YNFLIYGCCVTGELTKAFEL 866



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 213/469 (45%), Gaps = 47/469 (10%)

Query: 35  FDSATAEYAN----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
            D A + + N    G   ++ T+S++I       +   A   L ++ +     T   + S
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G+ ++ +   A  +FD+M   G +P    Y ++++   +E +L  AFR Y  M   G
Sbjct: 431 LISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKG 490

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I P   +   LI  LC ++  M  A K+F EM      P+  TY  LI G C+ G    A
Sbjct: 491 ISPNTYTFTALISGLC-HANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRA 549

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            EL  EM  K   P   TY  LI+GLC +  V EA     +++ +  + N   +S+L+ G
Sbjct: 550 FELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHG 609

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
            CK G    A++  + M+ +    ++V YS L+ G+ ++   +  +++L +M  QGL+PD
Sbjct: 610 YCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPD 669

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD--- 387
             LY  +I      G  + A    D MV  G  PN +T++        ++ GLCK     
Sbjct: 670 NVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYT-------ALINGLCKIGLMD 722

Query: 388 ---------------PNR----AFQVYLSMRN---RSISV----------DSLTYSSLIT 415
                          PN+     F  YL+      ++I +          +++TY+ LI 
Sbjct: 723 KAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIR 782

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            FCK G I ++A ++  ++  G  PD  ++S ++     R  +++A +L
Sbjct: 783 GFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKL 831



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 221/475 (46%), Gaps = 52/475 (10%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           LI+   D   AL  F+         F H  ++F ++I  LV +N + PA  LL  +    
Sbjct: 66  LIQTLDDSRLALRFFNFLGLH--KNFDHSTTSFCILIHALVQSNLYWPASSLLQTLLLRG 123

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL-A 139
            +  E +F S           LD+ R  +     G +   ++Y+        +N+ +L  
Sbjct: 124 LN-PEGLFESF----------LDSYRKCNFSTTLGFDLLIQTYV--------QNRRELDG 164

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
               R M + GI P + +L+ ++  L +       A  +F E+ + G  PD Y Y  ++ 
Sbjct: 165 LVVVRLMMDCGILPQIRTLSGVLNGLIRIR-QFRMALHLFDEIVSSGLRPDVYVYTAVVR 223

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
            LC L     A+E+   ME+  C  +V TY   I GLC+++ V EA+ +   +  KG+  
Sbjct: 224 SLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRA 283

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +V TY +L+ GLCK        E++  MI     P+    S L++GL K+G +  A +++
Sbjct: 284 DVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLV 343

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS--------- 370
           +++K  G+ P   +Y  +I+  C  GK  EA +  + M   G+ PN +T+S         
Sbjct: 344 NKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKR 403

Query: 371 --LHIRIH-----------------NTVVQGLCKTDPNRAFQ-VYLSMRNRSISVDSLTY 410
             L + +H                 ++++ G CK    RA + ++  M    +  + + Y
Sbjct: 404 GKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +SLI+ +CK+G++H + R+  E+   G  P+  T++A+++ L    +M +A +L 
Sbjct: 464 TSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLF 518



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 198/432 (45%), Gaps = 34/432 (7%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E +++ A  ++   T +   G   +  TF+ +IS L  AN+   A  L   + +      
Sbjct: 473 EGELHNAFRLYHEMTGK---GISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPN 529

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           E  +  +  G+ +    + A  + D+M E G  P   +Y  +++ L    ++  A  F  
Sbjct: 530 EVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMN 589

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            ++    +      + L+   CK  G +D A    REM  RG   D   Y  LI G+ R 
Sbjct: 590 DLQGEQQKLNEMCFSALLHGYCK-EGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
                  +L K+M  +   P  V YT++I+   ++ +++ A  L++ M S+G  PNV TY
Sbjct: 649 QDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTY 708

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           ++L++GLCK G   +A  L + M++    PN  TY+  L+ L  EG +++A+++ D + L
Sbjct: 709 TALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL-L 767

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR---------- 374
           +G   +   Y  +I  FC +G+ QEAA  L  M+  GI+P+ +++S  I           
Sbjct: 768 EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKE 827

Query: 375 ------------------IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
                              +N ++ G C T +  +AF++   M  R +  +  TY+SLI 
Sbjct: 828 AIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIH 887

Query: 416 CFCKKGDIHKSA 427
             C    +  +A
Sbjct: 888 GTCLMSSVSSTA 899



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 179/382 (46%), Gaps = 15/382 (3%)

Query: 6   MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ 65
           M +W+          LI         +  F+        G   D  T+  +IS L S  +
Sbjct: 521 MVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGR 580

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRPLDAMRVFDKMKEFGCEPTPKS 122
              A + ++ +  E+  + E  F ++  GY   GR+   LDA R   +M   G       
Sbjct: 581 VSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACR---EMLGRGVAMDLVC 637

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y  ++  ++ +   +      + M + G++P       +I A  K +G +  AF ++  M
Sbjct: 638 YSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAK-AGNLKMAFGLWDIM 696

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
            + GC P+  TY  LINGLC++G + +A+ L +EM      P   TY   ++ L    ++
Sbjct: 697 VSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNI 756

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           E+A++L + +  +G   N  TY+ L+ G CK G   +A E+L  MI     P+ ++YST+
Sbjct: 757 EKAIQLHDVLL-EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTI 815

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           +   C+ G L+EA+++ + M  +G+ PD   Y  +I   C  G+  +A    D+M+  G+
Sbjct: 816 IYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGV 875

Query: 363 TPNRLTWSLHIRIHNTVVQGLC 384
            PNR T+       N+++ G C
Sbjct: 876 KPNRATY-------NSLIHGTC 890



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 13/151 (8%)

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G+ P       +++    I +++ A +  DE+V  G+ P+       + ++  VV+ LC+
Sbjct: 175 GILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPD-------VYVYTAVVRSLCE 227

Query: 386 -TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             D  RA +V   M +    +   TY+  I   CK   + ++  I + L   G   D GT
Sbjct: 228 LKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGT 287

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
           +  ++  L    +  +A E    E+MN+ +E
Sbjct: 288 YCTLVLGLCKVEEF-EAGE----EMMNEMIE 313


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 205/372 (55%), Gaps = 18/372 (4%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE----NQLKLAFRFYRHMREIGIQPC 154
           H P+  + +F +M+  G +    +YIT L IL+       Q+  AF  +  + ++G QP 
Sbjct: 64  HYPI-VIHLFQRMELHGIQ---SNYIT-LNILINSYCHLRQINSAFSVFAKILKLGYQPD 118

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + +   LI+ LC N G +  +      + ++G   D  +YGTLINGLC++G+   A  L 
Sbjct: 119 IITYTTLIRGLCLN-GQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLL 177

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           +++E + C P VV Y ++I+GLC+ K V +A  L+ EM  K V PNV TY+SL+ G C  
Sbjct: 178 RKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIV 237

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G   +A  LL  M+ K   PN+ T++TL++GLCKEGK++EA  ++  M  +G+ PD   Y
Sbjct: 238 GQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTY 297

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQ 393
             ++  +  + +  +A N  + M   G+T +       +  ++ ++ GL K    + A  
Sbjct: 298 NALMDGYFLVKEAGKAKNVFNIMAQMGVTCD-------VHSYSVMISGLSKMKMLDEAMD 350

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++  MRN ++  D + YSSLI   CK G I+ + + VDE+   G  P+  T+++++ AL 
Sbjct: 351 LFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALC 410

Query: 454 DRRKMRQAAELL 465
              ++ +A  LL
Sbjct: 411 KSHQVDKAIALL 422



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 226/454 (49%), Gaps = 20/454 (4%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           + +N A  +F         G++ D  T++ +I  L    Q + + +  DR+  +   +  
Sbjct: 98  RQINSAFSVFAKILKL---GYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDH 154

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + ++  G  ++ +   A+R+  K++   C P    Y T++  L ++  ++ AF  Y  
Sbjct: 155 VSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCE 214

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E  + P V +   LI   C   G +D AF +  EM  +   P+  T+ TL++GLC+ G
Sbjct: 215 MFEKRVFPNVVTYTSLIYGFCI-VGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEG 273

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+ EAK L   M  +   P V TY +L++G    K   +A  +F  M   GV  +V +YS
Sbjct: 274 KMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYS 333

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            ++ GL K     +AM+L + M ++   P++V YS+L++GLCK G++  A++ +D M  +
Sbjct: 334 VMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDR 393

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G  P+   Y  +I   C   +  +A   L ++   GI  N  T       +N +V GLCK
Sbjct: 394 GQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYT-------YNILVDGLCK 446

Query: 386 ----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
               TD  + FQ  L    +  +VD +TYS +I   CK+    ++  ++ ++   GC+PD
Sbjct: 447 DGRLTDAQKVFQDLLM---KGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPD 503

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
              +  ++ A ++ + M   AE LL E+++ CV+
Sbjct: 504 AIAYETIINAFFE-KDMNDKAEKLLREMID-CVD 535



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 137/263 (52%), Gaps = 8/263 (3%)

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
           L  + +A + F  M      P ++ +  ++  L ++K     + LF+ M   G++ N  T
Sbjct: 27  LPNLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYIT 86

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            + L++  C     + A  +   ++   ++P+I+TY+TL+ GLC  G+++E++   DR+ 
Sbjct: 87  LNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLV 146

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            QG+K D   YG +I+  C IG+   A   L ++      P+       + ++NT++ GL
Sbjct: 147 SQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPD-------VVMYNTIIDGL 199

Query: 384 CKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK    R AF +Y  M  + +  + +TY+SLI  FC  G + K+  +++E+VL    P+ 
Sbjct: 200 CKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNV 259

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T++ ++  L    KMR+A  L+
Sbjct: 260 CTFNTLVDGLCKEGKMREAKSLV 282



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 139/280 (49%), Gaps = 8/280 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++ A   F  M      P    +G ++  L +         LF+ ME        +T  
Sbjct: 29  NLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLN 88

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN  C  + +  A  +F ++   G +P++ TY++L+ GLC  G   +++     ++S+
Sbjct: 89  ILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQ 148

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             + + V+Y TL+NGLCK G+   A+ +L +++ +  +PD  +Y  II   C     ++A
Sbjct: 149 GIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDA 208

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
            +   EM    + PN +T++       +++ G C     ++AF +   M  ++++ +  T
Sbjct: 209 FDLYCEMFEKRVFPNVVTYT-------SLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCT 261

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +++L+   CK+G + ++  +V  ++ +G  PD  T++A+M
Sbjct: 262 FNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALM 301


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 185/330 (56%), Gaps = 9/330 (2%)

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           K A +    MR+ G  P + + NV++  +C+  G +D A +  + +P+ GC P++ +Y  
Sbjct: 9   KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ-EGRVDDAIEFLKNLPSYGCEPNTVSYNI 67

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++ GLC   +  +A+EL  EM  K C P VVT+  LI+ LC+   VE A+ + E++   G
Sbjct: 68  VLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG 127

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
             PN  +Y+ L+   CK     +AM  L +M+S+   P+IV+Y+TLL  LC+ G++  AV
Sbjct: 128 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV 187

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           E+L ++K +G  P    Y  +I      GK +EA   L+EMV  G+ P+ +T+S      
Sbjct: 188 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYS------ 241

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            T+  GLC+ D    A + +  +++  I  +++ Y+++I   CK+ + H +  +   ++ 
Sbjct: 242 -TIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIG 300

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +GC+P+E T++ ++  L     +++A +LL
Sbjct: 301 NGCMPNESTYTILIEGLAYEGLIKEARDLL 330



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 174/322 (54%), Gaps = 7/322 (2%)

Query: 66  FRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
           ++ A  LLD +  + C  T DI  +  +  G  +  R  DA+     +  +GCEP   SY
Sbjct: 8   YKQAMKLLDEMRDKGC--TPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSY 65

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             VL  L    + + A      M + G  P V + N+LI  LC+  G ++ A ++  ++P
Sbjct: 66  NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR-KGLVEPALEVLEQIP 124

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             GCTP+S +Y  L++  C+  K+ +A      M ++ C P +V+Y +L+  LC+S  V+
Sbjct: 125 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 184

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
            A+ L  +++ KG  P + +Y++++DGL K G + +A+ELL  M+SK  +P+I+TYST+ 
Sbjct: 185 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 244

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
            GLC+E ++++A+    +++  G++P+  LY  II   C   +   A +    M+  G  
Sbjct: 245 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM 304

Query: 364 PNRLTWSLHIRIHNTVVQGLCK 385
           PN  T++  I I     +GL K
Sbjct: 305 PNESTYT--ILIEGLAYEGLIK 324



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 183/335 (54%), Gaps = 9/335 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM++ D+M++ GC P   +Y  V+  + +E ++  A  F +++   G +P   S N+++K
Sbjct: 11  AMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLK 70

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC      DA  ++  EM  +GC P+  T+  LI+ LCR G +  A E+ +++    C+
Sbjct: 71  GLCTAERWEDAE-ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCT 129

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  ++Y  L++  C+ K +++AM   + M S+G  P++ +Y++L+  LC+ G    A+EL
Sbjct: 130 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 189

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  +  K   P +++Y+T+++GL K GK +EA+E+L+ M  +GL+PD   Y  I +  C 
Sbjct: 190 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 249

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
             + ++A     ++   GI PN +       ++N ++ GLCK  + + A  ++  M    
Sbjct: 250 EDRIEDAIRAFGKVQDMGIRPNTV-------LYNAIILGLCKRRETHSAIDLFAYMIGNG 302

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
              +  TY+ LI     +G I ++  ++DEL   G
Sbjct: 303 CMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 337



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 164/315 (52%), Gaps = 9/315 (2%)

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A CK SG    A K+  EM ++GCTPD  TY  ++NG+C+ G++ +A E  K + +  C 
Sbjct: 1   ATCKRSG-YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCE 59

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  V+Y  ++ GLC ++  E+A  L  EM  KG  PNV T++ L+  LC+ G    A+E+
Sbjct: 60  PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 119

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ +      PN ++Y+ LL+  CK+ K+ +A+  LD M  +G  PD   Y  +++  C 
Sbjct: 120 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 179

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
            G+   A   L ++   G  P  +++       NTV+ GL K    + A ++   M ++ 
Sbjct: 180 SGEVDVAVELLHQLKDKGCAPVLISY-------NTVIDGLTKAGKTKEALELLNEMVSKG 232

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D +TYS++    C++  I  + R   ++   G  P+   ++A++  L  RR+   A 
Sbjct: 233 LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAI 292

Query: 463 ELLLLELMNKCVEAE 477
           +L    + N C+  E
Sbjct: 293 DLFAYMIGNGCMPNE 307



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 161/331 (48%), Gaps = 1/331 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++++++ +    +   A + L  +    C+     +  + +G     R  DA
Sbjct: 22  GCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDA 81

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +M + GC P   ++  +++ L  +  ++ A      + + G  P   S N L+ A
Sbjct: 82  EELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHA 141

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK    MD A      M +RGC PD  +Y TL+  LCR G++  A EL  +++ K C+P
Sbjct: 142 FCKQK-KMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP 200

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +++Y ++I+GL ++   +EA+ L  EM SKG++P++ TYS++  GLC+      A+   
Sbjct: 201 VLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAF 260

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +     RPN V Y+ ++ GLCK  +   A+++   M   G  P+   Y  +I      
Sbjct: 261 GKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 320

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           G  +EA + LDE+   G+    L     IR+
Sbjct: 321 GLIKEARDLLDELCSRGVVRKSLINKGAIRL 351



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 131/243 (53%), Gaps = 9/243 (3%)

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+    ++AM+L +EMR KG  P++ TY+ +++G+C+ G    A+E L+ + S    PN 
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           V+Y+ +L GLC   + ++A E++  M  +G  P+   +  +IS  C  G  + A   L++
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLIT 415
           +   G TPN L++       N ++   CK         +L  M +R    D ++Y++L+T
Sbjct: 123 IPKYGCTPNSLSY-------NPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLT 175

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
             C+ G++  +  ++ +L   GC P   +++ V+  L    K ++A E LL E+++K ++
Sbjct: 176 ALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE-LLNEMVSKGLQ 234

Query: 476 AEV 478
            ++
Sbjct: 235 PDI 237



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 9/210 (4%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K ++KA+   D   +    G   D  +++ +++ L  + +   A +LL ++  + C   
Sbjct: 145 QKKMDKAMAFLDLMVSR---GCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPV 201

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  +  +A+ + ++M   G +P   +Y T+ A L  E++++ A R + 
Sbjct: 202 LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG 261

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            ++++GI+P     N +I  LCK   T  +A  +F  M   GC P+  TY  LI GL   
Sbjct: 262 KVQDMGIRPNTVLYNAIILGLCKRRET-HSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 320

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           G I EA++L  E+    CS  VV   SLIN
Sbjct: 321 GLIKEARDLLDEL----CSRGVVR-KSLIN 345


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 178/314 (56%), Gaps = 11/314 (3%)

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           V S +  I  LCK  G +  A +IFREM  +G  PDS+TY  LINGLC+  ++     L 
Sbjct: 91  VISYSRKINGLCKK-GQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            EM+ +  SPTVVTYT+LI+G C +  V+ AM + +EM  +G+ PN  TY++L+ GLC  
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDC 209

Query: 275 GCSSQAMELLQMMISKRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           G   +A+ +L+ M  + +   PN+VTY+ L++GLC++G  +  +E LD M + G  P+  
Sbjct: 210 GEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNA 269

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRA 391
            Y  +I   C  G + EAA  L+EMV  G         L + I+N+++ GLCK  + + A
Sbjct: 270 TYTALIHGLCQKGSFLEAAVLLNEMVAIG-------CELDVVIYNSLIDGLCKMGELDFA 322

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            ++ + M  + ++ D  TY+SLI   C  G + ++  ++ E+   G +P+  T++ ++  
Sbjct: 323 REMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLING 382

Query: 452 LWDRRKMRQAAELL 465
                +   A +L+
Sbjct: 383 FTQADRTDHALQLV 396



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 162/304 (53%), Gaps = 11/304 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM +F +M+E G  P   +Y  ++  L ++ QL++       M+  G  P V +   LI
Sbjct: 109 EAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLI 168

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA- 221
              C  +G +DAA  I  EM +RG TP++ TY  LI GLC  G++  A  + KEM+ +  
Sbjct: 169 HGFC-TAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGN 227

Query: 222 -CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C P VVTYT LI+GLCQ    E  M   +EM   G  PN  TY++L+ GLC+ G   +A
Sbjct: 228 ECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEA 287

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             LL  M++     ++V Y++L++GLCK G+L  A E+   M  +G+ PD   Y  +I  
Sbjct: 288 AVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQG 347

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMR 399
            CD G   EA   + EM   GI PN +T++       T++ G  + D  + A Q+   M+
Sbjct: 348 LCDAGLLDEALGLMQEMRAKGIVPNSVTYT-------TLINGFTQADRTDHALQLVNEMK 400

Query: 400 NRSI 403
           +  +
Sbjct: 401 SNGL 404



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 3/292 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D+ T++++I+ L    Q      L+D +       T   + ++  G+    R   A
Sbjct: 121 GSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAA 180

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ--PCVASLNVLI 162
           M + D+M+  G  P   +Y  ++  L +  +++ A    + M+  G +  P V +   LI
Sbjct: 181 MDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLI 240

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+  G  +   +   EM   GC P++ TY  LI+GLC+ G   EA  L  EM    C
Sbjct: 241 HGLCQK-GLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGC 299

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              VV Y SLI+GLC+   ++ A  +   M  KGV P+VFTY+SL+ GLC  G   +A+ 
Sbjct: 300 ELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALG 359

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           L+Q M +K   PN VTY+TL+NG  +  +   A+++++ MK  GL P   +Y
Sbjct: 360 LMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIY 411



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 155/307 (50%), Gaps = 44/307 (14%)

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
           ++ +I+R         D  +Y   INGLC+ G+I EA E+F+EME K  +P   TY  LI
Sbjct: 74  SSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILI 133

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           NGLC+   +E  + L +EM+++G  P V TY++L+ G C  G    AM++L  M  +   
Sbjct: 134 NGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGIT 193

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK--PDAGLYGKIISCFCDIGKYQEAA 351
           PN VTY+ L+ GLC  G+++ A+ +L  MKL+G +  P+   Y ++I   C  G ++   
Sbjct: 194 PNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGM 253

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
            FLDEM++ G  PN                                         + TY+
Sbjct: 254 EFLDEMIISGCFPN-----------------------------------------NATYT 272

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           +LI   C+KG   ++A +++E+V  GC  D   +++++  L    ++  A E+ +L ++ 
Sbjct: 273 ALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQIL-MVE 331

Query: 472 KCVEAEV 478
           K V  +V
Sbjct: 332 KGVAPDV 338



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 9/269 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVH 99
           A GF     T++ +I    +A +   A D+LD +           + ++ +G    G V 
Sbjct: 154 ARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVE 213

Query: 100 RPLDAMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           R   A+ V  +MK  G  C P   +Y  ++  L ++   ++   F   M   G  P  A+
Sbjct: 214 R---AILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNAT 270

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
              LI  LC+    ++AA  +  EM   GC  D   Y +LI+GLC++G++  A+E+   M
Sbjct: 271 YTALIHGLCQKGSFLEAAV-LLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILM 329

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
             K  +P V TYTSLI GLC +  ++EA+ L +EMR+KG+ PN  TY++L++G  +   +
Sbjct: 330 VEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRT 389

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGL 306
             A++L+  M S    P    Y  L   L
Sbjct: 390 DHALQLVNEMKSNGLMPAGDIYKILFKSL 418


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 192/349 (55%), Gaps = 13/349 (3%)

Query: 122 SYITVLAILV----EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           S + +L+IL+    +  Q  L+F     + ++G +P V +L  LIK LC   G +  A +
Sbjct: 105 SDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCL-KGQIHQALQ 163

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
              ++   G   +  +YGTLINGLC++G+   A +L + ++ K   P VV Y ++I+ +C
Sbjct: 164 FHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMC 223

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + K V EA  L+ EM SKG+ P+V TY++L+ G C  G    A +L   MI +   PN+ 
Sbjct: 224 KVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVY 283

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           T++ L++G CKE +L+EA  +L  M  QG+KPD   Y  ++  +C + +  +A +  + +
Sbjct: 284 TFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTI 343

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
              G+ PN  ++S+       ++ G CK    + A  ++  M   +I  D +TY+SLI  
Sbjct: 344 SQRGVNPNIHSYSI-------MIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDG 396

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            CK G I  + ++VDE+   G   D+ T+++++ AL    ++ +A  LL
Sbjct: 397 LCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALL 445



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 199/384 (51%), Gaps = 12/384 (3%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           G++H+   A++  DK+   G      SY T++  L +  Q   A +  R +    +QP V
Sbjct: 156 GQIHQ---ALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNV 212

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
              N +I ++CK    ++ AF ++ EM ++G +PD  TY  LI+G C +GK+ +A +LF 
Sbjct: 213 VMYNTIIDSMCK-VKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFN 271

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           +M  +  +P V T+  L++G C+ + ++EA  +   M  +G++P+VFTY+SLMD  C   
Sbjct: 272 KMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVK 331

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
             ++A  +   +  +   PNI +YS +++G CK  K+ EA+ +   M    + PD   Y 
Sbjct: 332 EVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYN 391

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
            +I   C +GK   A   +DEM   G+  +++T+       N+++  LCK    ++A  +
Sbjct: 392 SLIDGLCKLGKISYALKLVDEMHDRGVPHDKITY-------NSILDALCKNHQVDKAIAL 444

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M++  I  D  TY++L+   CK G +  +  + ++L++ G + D   ++A++     
Sbjct: 445 LTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCS 504

Query: 455 RRKMRQAAELLLLELMNKCVEAEV 478
                ++ +LL     N C+   V
Sbjct: 505 HGLFDESLDLLSKMEENGCIPNAV 528



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 221/453 (48%), Gaps = 45/453 (9%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++ +  +  +++AL   D   A    GF  +  ++  +I+ L    Q   A  L
Sbjct: 143 ITLTTLIKGLCLKGQIHQALQFHDKVVAL---GFHLNKVSYGTLINGLCKVGQTSAALQL 199

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L RV+ +       ++ +I     +V    +A  ++ +M   G  P   +Y  +++    
Sbjct: 200 LRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCI 259

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             ++K A   +  M    I P V + N+L+   CK     +A   +   M  +G  PD +
Sbjct: 260 VGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAK-NVLAMMMKQGIKPDVF 318

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +L++  C + ++ +AK +F  +  +  +P + +Y+ +I+G C+ K V+EAM LF+EM
Sbjct: 319 TYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEM 378

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
               + P+V TY+SL+DGLCK G  S A++L+  M  +    + +TY+++L+ LCK  ++
Sbjct: 379 HCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 438

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            +A+ +L +MK +G++PD   Y  ++   C  G+ ++A    +++++ G       + L 
Sbjct: 439 DKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKG-------YILD 491

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
           + I+  ++QG                                  FC  G   +S  ++ +
Sbjct: 492 VNIYTAMIQG----------------------------------FCSHGLFDESLDLLSK 517

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  +GC+P+  T+  ++ +L+D+ +  +A +LL
Sbjct: 518 MEENGCIPNAVTYEIIICSLFDKDENDKAEKLL 550



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 174/337 (51%), Gaps = 4/337 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K VN+A   FD  +   + G   D  T++ +IS      + + A DL +++  E  +   
Sbjct: 226 KLVNEA---FDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNV 282

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             F  +  G+ +  R  +A  V   M + G +P   +Y +++       ++  A   +  
Sbjct: 283 YTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNT 342

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           + + G+ P + S +++I   CK    +D A  +F+EM      PD  TY +LI+GLC+LG
Sbjct: 343 ISQRGVNPNIHSYSIMIHGFCK-IKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLG 401

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           KI  A +L  EM  +      +TY S+++ LC++  V++A+ L  +M+ +G++P++ TY+
Sbjct: 402 KISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYT 461

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DGLCK G    A  + + ++ K +  ++  Y+ ++ G C  G   E++++L +M+  
Sbjct: 462 TLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEEN 521

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           G  P+A  Y  II    D  +  +A   L EM+  G+
Sbjct: 522 GCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 139/322 (43%), Gaps = 43/322 (13%)

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           R +  +   P  + +G ++  L +         L ++ME    +  +V  + LIN   Q 
Sbjct: 61  RLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQL 120

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
                +  +  ++   G EPNV T ++L+ GLC  G   QA++    +++     N V+Y
Sbjct: 121 GQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSY 180

Query: 300 STLLNGLCKEGKLQEAVEILDR-----------------------------------MKL 324
            TL+NGLCK G+   A+++L R                                   M  
Sbjct: 181 GTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVS 240

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +G+ PD   Y  +IS FC +GK ++A +  ++M+   I PN  T+       N +V G C
Sbjct: 241 KGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTF-------NILVDGFC 293

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K      A  V   M  + I  D  TY+SL+  +C   +++K+  I + +   G  P+  
Sbjct: 294 KERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIH 353

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           ++S ++      +K+ +A  L 
Sbjct: 354 SYSIMIHGFCKIKKVDEAMNLF 375



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 135/263 (51%), Gaps = 9/263 (3%)

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           +  K   P++  +  ++  L +S      + L  +M   G+  ++   S L++   + G 
Sbjct: 63  LHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQ 122

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
           +  +  +L  ++   + PN++T +TL+ GLC +G++ +A++  D++   G   +   YG 
Sbjct: 123 NPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGT 182

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVY 395
           +I+  C +G+   A   L  +    + PN       + ++NT++  +CK    N AF +Y
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPN-------VVMYNTIIDSMCKVKLVNEAFDLY 235

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M ++ IS D +TY++LI+ FC  G +  +  + ++++ +   P+  T++ ++      
Sbjct: 236 SEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKE 295

Query: 456 RKMRQAAELLLLELMNKCVEAEV 478
           R++++A  +L + +M + ++ +V
Sbjct: 296 RRLKEAKNVLAM-MMKQGIKPDV 317


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 234/459 (50%), Gaps = 32/459 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG  H+  T ++MI+      +   A  +L +V K   +     F ++ +G     +  +
Sbjct: 117 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSE 176

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ + D+M E GC+P   +Y +++  +       LA    R M E  ++  V + + +I 
Sbjct: 177 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIID 236

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LC++ G +DAA  +F+EM  +G      TY +L+ GLC+ GK  +   L K+M ++   
Sbjct: 237 SLCRD-GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV 295

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+T+  L++   +   ++EA  L++EM ++G+ PN+ TY++LMDG C     S+A  +
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+  +  P+IVT+++L+ G C   ++ + +++   +  +GL  +A  Y  ++  FC 
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWS----------------------------LHIRI 375
            GK + A     EMV  G+ P+ +T+                             L I +
Sbjct: 416 SGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM 475

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           + T+++G+CK      A+ ++ S+  + +  + +TY+ +I+  CKKG + ++  ++ ++ 
Sbjct: 476 YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            DG  P++ T++ ++ A      +  +A+  L+E M  C
Sbjct: 536 EDGNAPNDCTYNTLIRAHLRDGDLTASAK--LIEEMKSC 572



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 209/450 (46%), Gaps = 46/450 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D +TF+ +I  L    +   A  L+DR+ +  C      + SI  G  R      A
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  KM+E   +    +Y T++  L  +  +  A   ++ M   GI+  V + N L++ 
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 165 LCK----------------------------------NSGTMDAAFKIFREMPNRGCTPD 190
           LCK                                    G +  A ++++EM  RG +P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY TL++G C   ++ EA  +   M    CSP +VT+TSLI G C  K V++ M++F 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            +  +G+  N  TYS L+ G C+ G    A EL Q M+S    P+++TY  LL+GLC  G
Sbjct: 393 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 311 KLQEAVEILDRMKLQGLKPDAG--LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           KL++A+EI +   LQ  K D G  +Y  II   C  GK ++A N    +   G+ PN +T
Sbjct: 453 KLEKALEIFE--DLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +++ I        GLCK        + L  M     + +  TY++LI    + GD+  SA
Sbjct: 511 YTVMI-------SGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 563

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           ++++E+   G   D  +   V+  L    K
Sbjct: 564 KLIEEMKSCGFSADASSIKMVIDMLLSAMK 593



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 194/392 (49%), Gaps = 30/392 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M      P+   +    + +    Q  L   F + +   GI   + +LN++I
Sbjct: 71  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+   T   A+ +  ++   G  PD+ T+ TLI GL   GK+ EA  L   M    C
Sbjct: 131 NCFCRCCKTC-FAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY S++NG+C+S     A+ L  +M  + V+ +VFTYS+++D LC+ GC   A+ 
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M +K  + ++VTY++L+ GLCK GK  +   +L  M  + + P+   +  ++  F 
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWS------------------LHIRIHN------- 377
             GK QEA     EM+  GI+PN +T++                  L + + N       
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 369

Query: 378 ---TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              ++++G C     +   +V+ ++  R +  +++TYS L+  FC+ G I  +  +  E+
Sbjct: 370 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM 429

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V  G LPD  T+  ++  L D  K+ +A E+ 
Sbjct: 430 VSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 461



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 148/302 (49%), Gaps = 8/302 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +F+EM      P    +    + + R  +     +  K++E    +  + T   +
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+      A  +  ++   G EP+  T+++L+ GL   G  S+A+ L+  M+    
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P++VTY++++NG+C+ G    A+++L +M+ + +K D   Y  II   C  G    A +
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
              EM   GI  + +T+       N++V+GLCK    N    +   M +R I  + +T++
Sbjct: 250 LFKEMETKGIKSSVVTY-------NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            L+  F K+G + ++  +  E++  G  P+  T++ +M     + ++ +A  +L L + N
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN 362

Query: 472 KC 473
           KC
Sbjct: 363 KC 364


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 223/455 (49%), Gaps = 45/455 (9%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T IT   +++ +  +  +++AL   D   A+   GF  D  ++  +I+ L    +   A 
Sbjct: 130 TAITFNTLIKGLCLKGHIHQALHFHDKVVAQ---GFHLDQVSYGTLINGLCKVGRITAAL 186

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL RV+ +       ++  I     +     DA  ++ +M      P   +Y  +++  
Sbjct: 187 QLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGF 246

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
              ++L  A   +  M++  I P V + N+L+   CK  G ++ A  +   M      PD
Sbjct: 247 SAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCK-EGKVNDAKVVLAIMMKDDIKPD 305

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY +L++G C + K+ +AK++F  M +      V  YT+++NG C+ K V+EA+ LFE
Sbjct: 306 VVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFE 365

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EMR + + PNV TYSSL+DGLCK G    A++L+  M  +   PNIVTYS++L+ LCK  
Sbjct: 366 EMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNH 425

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            + +A+ +L  +K QG++PD   Y  +I   C  G+ ++A N  +++++ G       ++
Sbjct: 426 HVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKG-------YN 478

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
           L +  +  ++QG                                  FC KG   K+  ++
Sbjct: 479 LDVYAYTVMIQG----------------------------------FCDKGFFDKALALL 504

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++  +GC+P+  T+  V+ +L+++ +   A +LL
Sbjct: 505 SKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLL 539



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 178/329 (54%), Gaps = 9/329 (2%)

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           L+F  +  + + G  P   + N LIK LC   G +  A     ++  +G   D  +YGTL
Sbjct: 114 LSFSIFAKILKKGYHPTAITFNTLIKGLCL-KGHIHQALHFHDKVVAQGFHLDQVSYGTL 172

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           INGLC++G+I  A +L K ++ K   P  V Y  +I+ +C++K V +A  L+ +M +K +
Sbjct: 173 INGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRI 232

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P+VFTY++L+ G       + A++L   M  +   PN+ T++ L++G CKEGK+ +A  
Sbjct: 233 CPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKV 292

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +L  M    +KPD   Y  ++  +C I K  +A +  D M  GG+  N       ++I+ 
Sbjct: 293 VLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIAN-------VQIYT 345

Query: 378 TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           T+V G CK    + A  ++  MR R I  + +TYSSLI   CK G I  + ++VDE+   
Sbjct: 346 TMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDR 405

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G  P+  T+S+++ AL     + +A  LL
Sbjct: 406 GQPPNIVTYSSILDALCKNHHVDKAIALL 434


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 198/369 (53%), Gaps = 15/369 (4%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+  F  M      P+  S+  +L+ L +       F  Y  MR  G+     +LN+L+ 
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLN 112

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC N   +   F  F  +  RG +P+  TY TLI GLC   +I EA  LF  M+   C+
Sbjct: 113 CLC-NVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCT 171

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK------GVEPNVFTYSSLMDGLCKGGCS 277
           P VVTY +LI GLC + ++  A++L +EM +         +PNV TY+ ++DGLCK G  
Sbjct: 172 PDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRE 231

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A +L + M ++   P+I++Y++L++G C  GK +E+  +LD M  QGL+PD   +  +
Sbjct: 232 DEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVL 291

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  GK  EA   L  M+  GI P+ +T+       N++++G C   D N A ++++
Sbjct: 292 IDTLCKEGKVIEAKKLLGVMIESGIVPDLVTY-------NSLIEGFCMVGDLNSARELFV 344

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
           SM ++    D ++Y+ LI  + K   + ++ ++ +E++L G  P+  T+ +++  ++   
Sbjct: 345 SMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAG 404

Query: 457 KMRQAAELL 465
           K+  A +L 
Sbjct: 405 KVDDAKKLF 413



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/550 (26%), Positives = 257/550 (46%), Gaps = 102/550 (18%)

Query: 3   VKTMFKWSTKITSA--QVLQLIRAEKDVNKALVIFDSATAEYANGFRH---------DNS 51
           + ++F  S+ I S   Q+   +R  K  N         TA +A  F H           S
Sbjct: 19  LSSLFTHSSAIPSPNPQIAFFLRHCKTGN--------VTATHALHFFHLMMRSTPTPSLS 70

Query: 52  TFSLMISKLVSANQFRPAEDL-----LDRVNKEKCDITEDIFLS-ICRGYGRVHRPLDAM 105
           +F+ ++S L     +     L     L  ++ ++C  T +I L+ +C     V+R  +  
Sbjct: 71  SFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRC--TLNILLNCLCN----VNRLREGF 124

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
             F  +   G  P   +Y T++  L  E+++  A R +  M+++G  P V +   LIK L
Sbjct: 125 AAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGL 184

Query: 166 CKNSGTMDAAFKIFREMPNR------GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           C  +G ++ A K+ +EM N        C P+  TY  +++GLC++G+  EAK+LF+EM+T
Sbjct: 185 C-GTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKT 243

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +   P++++Y SLI+G C +   EE+ RL +EM  +G++P++ T++ L+D LCK G   +
Sbjct: 244 QGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIE 303

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A +LL +MI     P++VTY++L+ G C  G L  A E+   M  +G +PD   Y  +I+
Sbjct: 304 AKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLIN 363

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------------------------- 374
            +    K +EA    +EM+L G  PN +T+   ++                         
Sbjct: 364 GYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAE 423

Query: 375 ---IHNTVVQGLCKTD------------------------------------PNRAFQVY 395
               +   + GLCK D                                       A++++
Sbjct: 424 NSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELF 483

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             + N     + +TY+ +I  FC++G + K+  ++ ++  +GC PD  T++ +M   ++ 
Sbjct: 484 EKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYES 543

Query: 456 RKMRQAAELL 465
            K+ +  +LL
Sbjct: 544 NKLEEVVQLL 553



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 184/376 (48%), Gaps = 9/376 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           I  G  +V R  +A ++F++MK  G  P+  SY +++       + + + R    M + G
Sbjct: 221 IVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQG 280

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           +QP + + NVLI  LCK    ++A  K+   M   G  PD  TY +LI G C +G +  A
Sbjct: 281 LQPDMVTFNVLIDTLCKEGKVIEAK-KLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSA 339

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           +ELF  M +K C P V++Y  LING  ++  VEEAM+L+ EM   G  PNV TY SL+ G
Sbjct: 340 RELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKG 399

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           +   G    A +L  +M +     N  TY   L+GLCK   L EA+++   +K    K +
Sbjct: 400 IFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLE 459

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
                 +I   C  GK + A    +++   G  PN +T+++       ++ G C+    +
Sbjct: 460 IENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTI-------MIHGFCREGQVD 512

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A  +   M     + D +TY++L+  F +   + +  +++  +      PD  T S V+
Sbjct: 513 KANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVV 572

Query: 450 TALWDRRKMRQAAELL 465
             L    K ++   LL
Sbjct: 573 DMLSKDEKYQECLHLL 588



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 195/369 (52%), Gaps = 9/369 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+++++  L    +   A+ L + +  +    +   + S+  G+    +  ++ R+ D+M
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEM 276

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G +P   ++  ++  L +E ++  A +    M E GI P + + N LI+  C   G 
Sbjct: 277 LDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM-VGD 335

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +++A ++F  MP++GC PD  +Y  LING  +  K+ EA +L+ EM      P V+TY S
Sbjct: 336 LNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDS 395

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+ G+  +  V++A +LF  M++ G+  N +TY   +DGLCK  C  +AM+L   + S  
Sbjct: 396 LLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSN 455

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +  I   + L++GLCK GKL+ A E+ +++  +G +P+   Y  +I  FC  G+  +A 
Sbjct: 456 FKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKAN 515

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             + +M   G TP+ +T+       NT+++G  +++      Q+   M  + +S D++T 
Sbjct: 516 VLIQKMEANGCTPDIITY-------NTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITC 568

Query: 411 SSLITCFCK 419
           S ++    K
Sbjct: 569 SIVVDMLSK 577



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 165/312 (52%), Gaps = 5/312 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G + D  TF+++I  L    +   A+ LL  + +    I  D+  + S+  G+  V    
Sbjct: 280 GLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES--GIVPDLVTYNSLIEGFCMVGDLN 337

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  +F  M   GCEP   SY  ++    +  +++ A + Y  M  +G +P V + + L+
Sbjct: 338 SARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 397

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K +   +G +D A K+F  M   G   +SYTYG  ++GLC+   ++EA +LF E+++   
Sbjct: 398 KGIFL-AGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNF 456

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              +     LI+GLC++  +E A  LFE++ ++G EPNV TY+ ++ G C+ G   +A  
Sbjct: 457 KLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANV 516

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L+Q M +    P+I+TY+TL+ G  +  KL+E V++L RM  + + PDA     ++    
Sbjct: 517 LIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLS 576

Query: 343 DIGKYQEAANFL 354
              KYQE  + L
Sbjct: 577 KDEKYQECLHLL 588


>gi|255660944|gb|ACU25641.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 481

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 226/469 (48%), Gaps = 40/469 (8%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++   K+   AL  F     E +N F H+  T   +I  L  A++   A  +L  + 
Sbjct: 15  VYNVLHGAKNSEHALQFF--RWVERSNLFXHNRETHLKIIEILGRASKLNHARCILLDMP 72

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K+  +  ED+++ +   YG+     +++++F KM+E G   T KSY  +  +++   +  
Sbjct: 73  KKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVXRTIKSYDALFKVILRRGRYM 132

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A R++  M   GI+P   + NV+I      SG ++ + + F +M +R  TPD  TY T+
Sbjct: 133 MAKRYFNKMLSEGIEPTRHTFNVMIWGFFL-SGKVETSNRFFXDMXSREITPDVVTYNTM 191

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING  R+ K+ E ++ F EM+ +   PTVVTYT+LI G      V++A+ L EEM+  G+
Sbjct: 192 INGYYRVBKMEEXEKYFVEMKGRNIEPTVVTYTTLIKGYXSVDRVDBALXLXEEMKXFGI 251

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAV 316
           +PN  TYS+L+ GLC     S+A  +L+ M+ K   P +   +  L++G CK G L  A 
Sbjct: 252 KPNAITYSTLLPGLCDAEKMSEARSILKEMVXKYXAPTDNSIFMRLISGQCKVGDLDAAA 311

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIRI 375
           ++J  M    +  +AG YG +I  +C  G+Y +A   LD+++   I    + T  +    
Sbjct: 312 DVJKAMIRLSIPTEAGHYGVLIEXYCKAGQYDKAVKLLDKVIEKDIISRPQNTLXMEPSA 371

Query: 376 HNTVVQGLCKT-----------------------------------DPNRAFQVYLSMRN 400
           +N +++ LC                                      P+ AF++   M  
Sbjct: 372 YNXLIEYLCNNGQTAKAETLVRZLMKLGVQDPTALNTLIRGHSXEGSPDSAFELLKIMLR 431

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           R +  +   Y  L   + KK +   +   +D ++ +G LPD   + +VM
Sbjct: 432 RKVDSEQXAYDXLXQSYLKKXEPAXAKAALDSMIENGHLPDSSLFRSVM 480



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 159/342 (46%), Gaps = 14/342 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A +F+R +    +       ++ I  +   +  ++ A  I  +MP +G   D   +  +I
Sbjct: 28  ALQFFRWVERSNLFXHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDLWVLMI 87

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +   + G + E+ ++F++ME      T+ +Y +L   + +      A R F +M S+G+E
Sbjct: 88  DSYGKAGIVQESVKMFQKMEELGVXRTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIE 147

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P   T++ ++ G    G    +      M S+   P++VTY+T++NG  +  K++E  + 
Sbjct: 148 PTRHTFNVMIWGFFLSGKVETSNRFFXDMXSREITPDVVTYNTMINGYYRVBKMEEXEKY 207

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              MK + ++P    Y  +I  +  + +  +A    +EM   GI PN +T+S       T
Sbjct: 208 FVEMKGRNIEPTVVTYTTLIKGYXSVDRVDBALXLXEEMKXFGIKPNAITYS-------T 260

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           ++ GLC  +  + A  +   M  +  +  D+  +  LI+  CK GD+  +A ++  ++  
Sbjct: 261 LLPGLCDAEKMSEARSILKEMVXKYXAPTDNSIFMRLISGQCKVGDLDAAADVJKAMI-R 319

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
             +P E     V+   + +      A    ++L++K +E ++
Sbjct: 320 LSIPTEAGHYGVLIEXYCKAGQYDKA----VKLLDKVIEKDI 357


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 141/496 (28%), Positives = 234/496 (47%), Gaps = 53/496 (10%)

Query: 15  SAQVLQLIRAEKDVNK-----ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
            A +  L RA  DV +     A+  ++      A+    D  T+ ++I     A +    
Sbjct: 47  GASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLG 106

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDKMKEFGCEPTPKSYITVLA 128
              L  V K+   +    F  + +G     R  DAM  V  +M E GC P   SY  +L 
Sbjct: 107 FAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLK 166

Query: 129 ILVEENQLKLAFRFYRHM---REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
            L +EN+ + A      M   R  G  P V S   +I    K  G  D A+  + EM +R
Sbjct: 167 GLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK-EGDSDKAYSTYHEMLDR 225

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD  TY ++I  LC+   + +A E+   M      P  +TY S+++G C S   +EA
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           +   ++MRS GVEP+V TYS LMD LCK G   +A ++   M  +  +P I TY TLL G
Sbjct: 286 IGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQG 345

Query: 306 --------------------------------LC---KEGKLQEAVEILDRMKLQGLKPD 330
                                           +C   K+GK+ +A+ +  +M+ QGL P+
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPN 405

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
           A  YG +I   C  G+ ++A  + ++M+  G++P  +       ++N+++ GLC  +   
Sbjct: 406 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNI-------VYNSLIHGLCTCNKWE 458

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           RA ++ L M +R I ++++ ++S+I   CK+G + +S ++ + +V  G  P+  T++ ++
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518

Query: 450 TALWDRRKMRQAAELL 465
                  KM +A +LL
Sbjct: 519 NGYCLAGKMDEAMKLL 534



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 229/459 (49%), Gaps = 20/459 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +   + ++KA+ + ++      NG   D  T++ ++    S+ Q + A   
Sbjct: 232 VTYNSIIAALCKAQAMDKAMEVLNTMVK---NGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 73  LDRVNKEKCD---ITEDIFLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           L ++  +  +   +T  + +  +C+      R ++A ++FD M + G +P   +Y T+L 
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKN----GRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
               +  L         M   GI P     ++LI A  K  G +D A  +F +M  +G  
Sbjct: 345 GYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQ-GKVDQAMLVFSKMRQQGLN 403

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P++ TYG +I  LC+ G++ +A   F++M  +  SP  + Y SLI+GLC     E A  L
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 463

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             EM  +G+  N   ++S++D  CK G   ++ +L ++M+    +PN++TY+TL+NG C 
Sbjct: 464 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCL 523

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            GK+ EA+++L  M   GLKP+   Y  +I+ +C I + ++A     EM   G++P+ +T
Sbjct: 524 AGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       N ++QGL +T    A  ++Y+ +      ++  TY+ ++   CK      + 
Sbjct: 584 Y-------NIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           ++   L L     +  T++ ++ AL    +  +A +L +
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFV 675



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 197/436 (45%), Gaps = 46/436 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS T     G + + +T+  ++    +         LLD + +        +F  +  
Sbjct: 323 IFDSMTKR---GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +   AM VF KM++ G  P   +Y  V+ IL +  +++ A  ++  M + G+ P
Sbjct: 380 AYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439

Query: 154 CVASLNVLIKALCK----------------------------------NSGTMDAAFKIF 179
                N LI  LC                                     G +  + K+F
Sbjct: 440 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 499

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  P+  TY TLING C  GK+ EA +L   M +    P  VTY++LING C+ 
Sbjct: 500 ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKI 559

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +E+A+ LF+EM S GV P++ TY+ ++ GL +   ++ A EL   +     +  + TY
Sbjct: 560 SRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 619

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     +A+++   + L  LK +A  +  +I     +G+  EA +       
Sbjct: 620 NIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS 679

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G+ PN   W+  +   N + QGL +       Q++LSM +   +VDS   + ++    +
Sbjct: 680 NGLVPN--YWTYRLMAENIIGQGLLE----ELDQLFLSMEDNGCTVDSGMLNFIVRELLQ 733

Query: 420 KGDIHKSA---RIVDE 432
           +G+I ++     ++DE
Sbjct: 734 RGEITRAGTYLSMIDE 749



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 142/306 (46%), Gaps = 15/306 (4%)

Query: 174 AAFKIFREMPNRGC---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           AA   +  M   G    TPD  TYG LI   CR G++         +  K      + +T
Sbjct: 67  AAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFT 126

Query: 231 SLINGLCQSKSVEEAMRL-FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            L+ GLC  K   +AM +    M   G  PNVF+Y+ L+ GLC    S +A+ELL MM  
Sbjct: 127 PLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186

Query: 290 KR---HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
            R     P++V+Y+T++NG  KEG   +A      M  +G+ PD   Y  II+  C    
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQA 246

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
             +A   L+ MV  G+ P+ +T+       N+++ G C +  P  A      MR+  +  
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTY-------NSILHGYCSSGQPKEAIGFLKKMRSDGVEP 299

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D +TYS L+   CK G   ++ +I D +   G  P+  T+  ++     +  + +   LL
Sbjct: 300 DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 359

Query: 466 LLELMN 471
            L + N
Sbjct: 360 DLMVRN 365



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 166/343 (48%), Gaps = 6/343 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V  A++ F+    E   G    N  ++ +I  L + N++  AE+L
Sbjct: 407 VTYGAVIGILCKSGRVEDAMLYFEQMIDE---GLSPGNIVYNSLIHGLCTCNKWERAEEL 463

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C +    F SI   + +  R +++ ++F+ M   G +P   +Y T++    
Sbjct: 464 ILEMLDRGIC-LNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYC 522

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              ++  A +    M  +G++P   + + LI   CK S  M+ A  +F+EM + G +PD 
Sbjct: 523 LAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS-RMEDALVLFKEMESSGVSPDI 581

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  ++ GL +  +   AKEL+  +        + TY  +++GLC++K  ++A+++F+ 
Sbjct: 582 ITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQN 641

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +    ++    T++ ++D L K G + +A +L     S    PN  TY  +   +  +G 
Sbjct: 642 LCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGL 701

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           L+E  ++   M+  G   D+G+   I+      G+   A  +L
Sbjct: 702 LEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL 744



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 16/265 (6%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F E+  +    ++      +  + +  S   A+  +  M   G   V P++ TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARD-SPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            L+   C+ G        L  +I K  R + + ++ LL GLC + +  +A++I L RM  
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV---LGGITPNRLTWSLHIRIHNTVVQ 381
            G  P+   Y  ++   CD  + QEA   L  M     GG  P+ ++++       TV+ 
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT-------TVIN 204

Query: 382 GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           G  K  D ++A+  Y  M +R I  D +TY+S+I   CK   + K+  +++ +V +G +P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
           D  T+++++       + ++A   L
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFL 289



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 123/275 (44%), Gaps = 2/275 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ +I+    A +   A  LL  +           + ++  GY ++ R  DA
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+  G  P   +Y  +L  L +  +   A   Y  + E G Q  +++ N+++  
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN  T D A ++F+ +       ++ T+  +I+ L ++G+  EAK+LF    +    P
Sbjct: 626 LCKNKLT-DDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVP 684

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  +   +     +EE  +LF  M   G   +    + ++  L + G  ++A   L
Sbjct: 685 NYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL 744

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
             MI ++H     + ++L   L   GK QE    L
Sbjct: 745 S-MIDEKHFSLEASTASLFIDLLSGGKYQEYYRFL 778


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 194/396 (48%), Gaps = 34/396 (8%)

Query: 103 DAMRVFDKMKEF----GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           DAM +  K+K F    G  P   +Y T L    +      A + +  MR         + 
Sbjct: 224 DAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTY 283

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           NV+I  LC+ SG ++ AF    EM + G +PD++TYG L+NGLC+ G++ EAK L  EM 
Sbjct: 284 NVMISGLCR-SGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMS 342

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P VV Y +L++G  +     EA  +  EM S GV+PN   Y +L+ GLCK G   
Sbjct: 343 CSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLG 402

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A +LL  MI   HRP+  TY  L+ G  +      A E+L+ M+  G+ P+A  YG +I
Sbjct: 403 RASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMI 462

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL---------HIRI-------------- 375
           +  C  G+ +EA N L+EM+  G+ PN   ++          HI +              
Sbjct: 463 NGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVL 522

Query: 376 -----HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                +N++++GL        A + Y  ++ R +  D  TYS LI  +CK  ++ K+ ++
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +++  G  P+  T++ ++   +      + + +L
Sbjct: 583 LQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSIL 618



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 178/329 (54%), Gaps = 11/329 (3%)

Query: 125 TVLAILVE----ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
            VL +LV+       ++ A +    M ++G+ P     N L+K L + +  M+  +K+  
Sbjct: 176 AVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLR-ADAMELVWKLKG 234

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
            M   G  PD YTY T +   C+      AK++F+EM  + C+   VTY  +I+GLC+S 
Sbjct: 235 FMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSG 294

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
           +VEEA    EEM   G+ P+ FTY +LM+GLCKGG   +A  LL  M     +PN+V Y+
Sbjct: 295 AVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYA 354

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL++G  KEGK  EA +IL+ M   G++P+  +Y  +I   C IG+   A+  L+EM+  
Sbjct: 355 TLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKV 414

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           G  P+  T+   ++ H          D + AF++   MRN  I  ++ TY  +I   C+ 
Sbjct: 415 GHRPDTFTYHPLMQGH------FQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQN 468

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           G+  ++  +++E++ +G  P+   ++ ++
Sbjct: 469 GESKEAGNLLEEMISEGLKPNAFMYAPLI 497



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 216/463 (46%), Gaps = 46/463 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G + +   ++ ++   +   +   A D+L+ +        + ++ ++ RG  ++ +   
Sbjct: 344 SGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGR 403

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++ ++M + G  P   +Y  ++    +      AF     MR  GI P   +  ++I 
Sbjct: 404 ASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMIN 463

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG---------------------------- 195
            LC+N  + +A   +  EM + G  P+++ Y                             
Sbjct: 464 GLCQNGESKEAG-NLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVL 522

Query: 196 -------TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
                  +LI GL  +G+I EA+E + +++ +   P   TY+ LI+G C+++++E+A +L
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            ++M + G++PN  TY+ L++G  K     +   +LQ M+    +P+   Y  ++  L +
Sbjct: 583 LQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 642

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
              ++ A  +L  ++  GL PD  +Y  +IS  C +   ++A   LDEM   G+ P    
Sbjct: 643 SENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPG--- 699

Query: 369 WSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
               I  +N ++ G C++ D +RA  V+ S+  + +  + +TY++LI   CK GDI  + 
Sbjct: 700 ----IVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAF 755

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
            +  +++  G  PD   ++ + T   D   + QA  L L E M
Sbjct: 756 DLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQA--LFLTEEM 796



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 219/481 (45%), Gaps = 46/481 (9%)

Query: 35  FDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPA----EDLLDRVNKEKCDITED 86
           FD+A   +    R D      T+++MIS L  +     A    E+++D            
Sbjct: 261 FDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGA 320

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +   +C+G GR+    +A  + D+M   G +P    Y T++   ++E +   AF     M
Sbjct: 321 LMNGLCKG-GRLK---EAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEM 376

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G+QP     + LI+ LCK  G +  A K+  EM   G  PD++TY  L+ G  +   
Sbjct: 377 ISAGVQPNKIMYDNLIRGLCK-IGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYD 435

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
              A EL  EM      P   TY  +INGLCQ+   +EA  L EEM S+G++PN F Y+ 
Sbjct: 436 KDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAP 495

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+ G  K G  S A E L+ M      P++  Y++L+ GL   G+++EA E   +++ +G
Sbjct: 496 LIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRG 555

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI------------- 373
           L PD   Y  +I  +C     ++A   L +M+  G+ PN  T++  +             
Sbjct: 556 LVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVS 615

Query: 374 ---------------RIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCF 417
                           I+  V++ L +++    AF V   +    +  D   YSSLI+  
Sbjct: 616 SILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGL 675

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL---WDRRKMRQAAELLLLE-LMNKC 473
           CK  D+ K+  ++DE+  +G  P    ++A++       D  + R   + +L + L+  C
Sbjct: 676 CKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNC 735

Query: 474 V 474
           V
Sbjct: 736 V 736



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 170/372 (45%), Gaps = 9/372 (2%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++ +I  L +  +   AE+   +V K      E  +  +  GY +      A ++  +M 
Sbjct: 528 YNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQML 587

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  +L    + N  +      + M   G +P      ++I+ L + S  M
Sbjct: 588 NSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR-SENM 646

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           + AF +  E+   G  PD + Y +LI+GLC++  + +A  L  EM  +   P +V Y +L
Sbjct: 647 EVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNAL 706

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+S  +  A  +F+ + +KG+ PN  TY++L+DG CK G  + A +L + M+ +  
Sbjct: 707 IDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGI 766

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            P+   Y+ L  G      L++A+ + + M  +G      L+  ++  FC  G+ QE   
Sbjct: 767 APDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-HVSLFSTLVRGFCKRGRLQETEK 825

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT-YS 411
            L  M+   I PN  T      + N + +         A +V+  ++ +  S  S   +S
Sbjct: 826 LLHVMMDREIVPNAQT------VENVITEFGKAGKLCEAHRVFAELQQKKASQSSTDRFS 879

Query: 412 SLITCFCKKGDI 423
            L T    KG I
Sbjct: 880 LLFTDMINKGLI 891


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 201/365 (55%), Gaps = 13/365 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               F +   +G + +  S   ++  L+++N+       Y+ M    IQP V + NV+I 
Sbjct: 172 GFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVIN 231

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG---KIYEAKELFKEMETK 220
           ALCK +G M+ A  +  +M   G +P+  +Y TLI+G C+LG   K+Y+A  + KEM   
Sbjct: 232 ALCK-TGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVEN 290

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             SP + T+  LI+G  +  ++  ++++F+EM  + V PNV TY+SL++GLC GG  ++A
Sbjct: 291 EVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEA 350

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + +   M+S   +PN++TY +L+NG CK G ++EA+++ D +K QG +P   +Y  +I  
Sbjct: 351 IGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDA 410

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
           +C +GK  +     +EM   GI P+  T+       N ++ GLC+  +   A +++  + 
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPDVGTY-------NCLIAGLCRNGNIEAAKKLFDQLT 463

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N+ +  D +T+  L+  +C +G+  K+A ++ E+   G  P   T++ +M        ++
Sbjct: 464 NKGLP-DLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLK 522

Query: 460 QAAEL 464
            A  +
Sbjct: 523 AATNM 527



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 148/269 (55%), Gaps = 3/269 (1%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +++VF +M +    P   +Y +++  L    ++  A      M   G+QP + + + LI 
Sbjct: 315 SLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLIN 374

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CKN G M  A  +F  +  +G  P +  Y  LI+  C+LGKI +   L +EME +   
Sbjct: 375 GFCKN-GMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V TY  LI GLC++ ++E A +LF+++ +KG+ P++ T+  LM+G C  G S +A  L
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAML 492

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLYGKIISCFC 342
           L+ M     +P  +TY+ ++ G CKEG L+ A  +  +M K + L+ +   Y  ++  + 
Sbjct: 493 LKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYS 552

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSL 371
             GK ++A   L+EM+  G+ PNR+T+ +
Sbjct: 553 QKGKLEDANMLLNEMLEKGLVPNRITYEI 581



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 168/325 (51%), Gaps = 15/325 (4%)

Query: 154 CVASL--NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           CV S+  ++L+ A   NS   +  F+ F+     G    + +   L+  L +  +  + +
Sbjct: 150 CVNSIIADMLVLAYANNS-RFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVE 208

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
            L+KEM  +   P V T+  +IN LC++  + +A  + E+M+  G  PNV +Y++L+DG 
Sbjct: 209 YLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGY 268

Query: 272 CKGGCSS---QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           CK G +    +A  +L+ M+     PN+ T++ L++G  K+  L  ++++   M  Q + 
Sbjct: 269 CKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVI 328

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           P+   Y  +I+  C+ GK  EA    D+MV  G+ PN +T+       ++++ G CK   
Sbjct: 329 PNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITY-------HSLINGFCKNGM 381

Query: 389 NR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            + A  ++ S++ +     +  Y+ LI  +CK G I     + +E+  +G +PD GT++ 
Sbjct: 382 MKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNC 441

Query: 448 VMTALWDRRKMRQAAELLLLELMNK 472
           ++  L  R    +AA+ L  +L NK
Sbjct: 442 LIAGLC-RNGNIEAAKKLFDQLTNK 465



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 125/260 (48%), Gaps = 3/260 (1%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I+ L +  +   A  + D++           + S+  G+ +     +A+ +FD +
Sbjct: 333 TYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSV 392

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K  G  PT + Y  ++    +  ++   F     M   GI P V + N LI  LC+N G 
Sbjct: 393 KGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN-GN 451

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++AA K+F ++ N+G  PD  T+  L+ G C  G+  +A  L KEM      P  +TY  
Sbjct: 452 IEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNI 510

Query: 232 LINGLCQSKSVEEAMRLFEEM-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++ G C+  +++ A  +  +M + + +  NV +Y+ L+ G  + G    A  LL  M+ K
Sbjct: 511 MMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEK 570

Query: 291 RHRPNIVTYSTLLNGLCKEG 310
              PN +TY  +   +  +G
Sbjct: 571 GLVPNRITYEIVKEEMVDKG 590


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 229/473 (48%), Gaps = 35/473 (7%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +  +QV++++   K + KA+ IF    A      +     ++ MI  L+   Q+    
Sbjct: 158 TPMELSQVIRMLGNAKMIGKAITIFYQIKARKC---QPTAQAYNSMIIMLIHEGQYEKVH 214

Query: 71  DLLDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           +L + ++ E  C      + ++   + ++ R   A+R+ ++MKE G +PT K Y  ++++
Sbjct: 215 ELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISL 274

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
             + + +  A   +  MR +  +P V +   LI+ L K +G +D A+  + EM   GC P
Sbjct: 275 FFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGK-AGRIDEAYHFYHEMQREGCKP 333

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRL 248
           D+     +IN L + G++ +  +LF+EM    C P VVTY ++I  L +SKS V E    
Sbjct: 334 DTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW 393

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           FE M+  G+ P+ FTYS L+DG CK     +AM LL+ M  K   P    Y +L++ L K
Sbjct: 394 FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
             +   A E+   +K       A +Y  +I      G+  +A N  DEM   G TPN   
Sbjct: 454 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYA 513

Query: 369 WSL----------------------------HIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
           ++                              I  +N ++ GL KT  P+RA ++  +M+
Sbjct: 514 YNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMK 573

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           N +I  D+++Y+++++     G   ++A ++ E+   G   D  T+S+++ A+
Sbjct: 574 NSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAI 626



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 168/379 (44%), Gaps = 42/379 (11%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG +     ++++IS     +    A  L + +    C      +  + RG G+  R  +
Sbjct: 259 NGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDE 318

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A   + +M+  GC+P       ++  L +  +L    + +  M      P V + N +IK
Sbjct: 319 AYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIK 378

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL ++   +   F  F  M   G +P  +TY  LI+G C+  +I +A  L +EM+ K   
Sbjct: 379 ALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFP 438

Query: 224 PTVVTYTSLINGLCQSK-----------------------------------SVEEAMRL 248
           P    Y SLI+ L ++K                                    +++A+ L
Sbjct: 439 PCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINL 498

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F+EM   G  PNV+ Y++LM GL +     +A+  ++ M      P+I +Y+ +LNGL K
Sbjct: 499 FDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAK 558

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G    A+E+L  MK   +KPDA  Y  ++S     G ++EAA  + EM   G   + +T
Sbjct: 559 TGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLIT 618

Query: 369 WSLHIRIHNTVVQGLCKTD 387
           +S       ++++ + K D
Sbjct: 619 YS-------SILEAIGKVD 630



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 113/497 (22%), Positives = 206/497 (41%), Gaps = 95/497 (19%)

Query: 6   MFKWST-----------KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW             ++    V ++++ +  VN  +  F  A  +    ++HD ST+ 
Sbjct: 70  IFKWGPDAERALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKK--RNYQHDTSTYM 127

Query: 55  LMISKLVSANQFRPAEDLL-DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
            +I  L    Q+     ++ + V    C +T      + R  G       A+ +F ++K 
Sbjct: 128 ALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKA 187

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
             C+PT ++Y +++ +L+ E Q       Y  + E+                        
Sbjct: 188 RKCQPTAQAYNSMIIMLIHEGQ-------YEKVHEL------------------------ 216

Query: 174 AAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
                + EM N G C PD+ TY  LI+  C+LG+   A  L  EM+     PT   YT +
Sbjct: 217 -----YNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMI 271

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+   +  +V  A+ LFEEMR     P+VFTY+ L+ GL K G   +A      M  +  
Sbjct: 272 ISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGC 331

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII-SCFCDIGKYQEAA 351
           +P+ V  + ++N L K G+L + +++ + M +    P+   Y  II + F    +  E  
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVF 391

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP----------------------- 388
           ++ + M   GI+P+  T+S+       ++ G CKT+                        
Sbjct: 392 SWFERMKGSGISPSPFTYSI-------LIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAY 444

Query: 389 -------------NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
                        + A +++  ++    S  +  Y+ +I    K G +  +  + DE+  
Sbjct: 445 CSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSK 504

Query: 436 DGCLPDEGTWSAVMTAL 452
            GC P+   ++A+M+ L
Sbjct: 505 LGCTPNVYAYNALMSGL 521


>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g07740, mitochondrial-like [Cucumis sativus]
          Length = 460

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 200/399 (50%), Gaps = 13/399 (3%)

Query: 22  IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81
           ++  KD  +AL +F++    +  GF+H   ++S +I KL  + +F   E +L  +     
Sbjct: 56  VKEVKDPCEALALFENY---HEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNI 112

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
              E +F+++ + YG+ H     + +F +M  F C  T +S+  +L  LV+ +Q   A  
Sbjct: 113 RCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASE 172

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            ++   E+G +P   S N++IK   K  G  + A  +F EM  +G  P   TY + +  L
Sbjct: 173 IFQQAYEMGFRPNSVSYNIMIKGWIKKGG-WEQACNLFDEMLEKGVQPSVVTYNSXLGVL 231

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           CR G++  A  LFK M  K   P  VTY  L+ G C     +EA +L  +M   G +   
Sbjct: 232 CRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRP 291

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             Y  LM  L K G   +   LL  M  +R +P++VTY+ L+N LCKEGK+ +A ++L +
Sbjct: 292 VNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVK 351

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M++ G  P+A  Y  +I  +C+ G +  A   L+ M++ G  P       H++   ++V 
Sbjct: 352 MQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYP-------HLKTFASLVV 404

Query: 382 GLCKTDPNRAFQVYL--SMRNRSISVDSLTYSSLITCFC 418
           GL K + N  +  ++   M  R +  D+ T+  LI   C
Sbjct: 405 GLLKGENNDDYVCFVLEEMEKRQLRFDAETWRILIMDVC 443



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 201/426 (47%), Gaps = 29/426 (6%)

Query: 66  FRPAEDLLDRVNKEKCDITEDI-FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124
           F P +   +  +K++  I E I F++  +    V  P +A+ +F+   E G +    SY 
Sbjct: 29  FSPNKFDFENNHKQRRKIRERIPFVTDVK---EVKDPCEALALFENYHEKGFKHHYPSYS 85

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
           +++  L    + +       H+R   I+ C  +L V +      +  ++   ++F +MP+
Sbjct: 86  SLIYKLARSRRFEAVETILGHLRNRNIR-CNETLFVALIQHYGKAHLVEKGIELFHQMPS 144

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
             C     ++  L+N L    +  +A E+F++       P  V+Y  +I G  +    E+
Sbjct: 145 FNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMGFRPNSVSYNIMIKGWIKKGGWEQ 204

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A  LF+EM  KGV+P+V TY+S +  LC+ G    A+ L + M  K H PN VTY+ L+ 
Sbjct: 205 ACNLFDEMLEKGVQPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLME 264

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G C  GK +EA +++  M+  G K     YG +++     G   E  + L+EM    + P
Sbjct: 265 GWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKP 324

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           + +T+       N +V  LCK      A++V + M+      ++ TY  +I  +C  GD 
Sbjct: 325 DVVTY-------NILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDF 377

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTAL----------------WDRRKMRQAAELLLL 467
             + +I++ +++ G  P   T+++++  L                 ++R++R  AE   +
Sbjct: 378 DGAMKILNAMLMSGHYPHLKTFASLVVGLLKGENNDDYVCFVLEEMEKRQLRFDAETWRI 437

Query: 468 ELMNKC 473
            +M+ C
Sbjct: 438 LIMDVC 443


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 12/386 (3%)

Query: 84  TEDIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
           T D+ L   + +G+        A RV + ++ +G +P   +Y  +++  ++ NQL+ A R
Sbjct: 101 TPDVILCTKLIKGFFNSRNIGKATRVMEILERYG-KPDVFAYNALISGFIKANQLENANR 159

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
               M+  G  P V + N++I + C + G +D A +IF E+    C P   TY  LI   
Sbjct: 160 VLDRMKSRGFLPDVVTYNIMIGSFC-SRGKLDLALEIFEELLKDNCEPTVITYTILIEAT 218

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
              G I  A +L  EM +K   P  +TY ++I G+C+   V++A  L   + S+G +P++
Sbjct: 219 ILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDI 278

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY+ L+  L   G  S+  +L+  MIS   +PN+VT+S L+  LC++GK++EAV +L  
Sbjct: 279 ITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRS 338

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           MK +GLKPDA  Y  +I+ FC  G+   A  FL+ M+  G  P+ + +       NT++ 
Sbjct: 339 MKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNY-------NTIMA 391

Query: 382 GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLC+T   ++A +V+  +       +  +Y++L +     GD +++  ++ +L+  G  P
Sbjct: 392 GLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDP 451

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLL 466
           DE T++++++ L     + +A ELL+
Sbjct: 452 DEITYNSLISCLCRDGMVDEAIELLV 477



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 216/420 (51%), Gaps = 11/420 (2%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD-AM 105
           + D   ++ +IS  + ANQ   A  +LDR+ K +  + + +  +I  G       LD A+
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRM-KSRGFLPDVVTYNIMIGSFCSRGKLDLAL 193

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            +F+++ +  CEPT  +Y  ++   + +  + +A +    M   G++P   + N +I+ +
Sbjct: 194 EIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGM 253

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK    +D AF++ R + +RGC PD  TY  L+  L   GK  E ++L  EM +  C P 
Sbjct: 254 CKEM-MVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPN 312

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VVT++ LI  LC+   VEEA+ L   M+ KG++P+ + Y  L+ G C+ G    A E L+
Sbjct: 313 VVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLE 372

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            MIS    P+IV Y+T++ GLC+ GK  +A+E+ +++   G  P+   Y  + S     G
Sbjct: 373 YMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSG 432

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
               A   + +++  GI P+ +T+       N+++  LC+    + A ++ + M++    
Sbjct: 433 DRYRALEMILKLLNQGIDPDEITY-------NSLISCLCRDGMVDEAIELLVDMQSGRYR 485

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            + ++Y+ ++   CK    + +  ++  +   GC P+E T+  ++  +       +A EL
Sbjct: 486 PNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMEL 545



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 159/328 (48%), Gaps = 10/328 (3%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           +  F   M + G  P V     LIK    NS  +  A ++  E+  R   PD + Y  LI
Sbjct: 88  SLYFLECMVDKGYTPDVILCTKLIKGFF-NSRNIGKATRVM-EILERYGKPDVFAYNALI 145

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +G  +  ++  A  +   M+++   P VVTY  +I   C    ++ A+ +FEE+     E
Sbjct: 146 SGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCE 205

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P V TY+ L++     G    AM+LL  M+SK   P+ +TY+ ++ G+CKE  + +A E+
Sbjct: 206 PTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFEL 265

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L  +  +G KPD   Y  ++      GK+ E    + EM+  G  PN +T       H+ 
Sbjct: 266 LRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVT-------HSI 318

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++  LC+      A  +  SM+ + +  D+  Y  LI  FC++G +  +   ++ ++ DG
Sbjct: 319 LIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDG 378

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
           CLPD   ++ +M  L    K  QA E+ 
Sbjct: 379 CLPDIVNYNTIMAGLCRTGKADQALEVF 406



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 163/314 (51%), Gaps = 12/314 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +++ +  E  V+KA  +  S ++    G + D  T+++++  L+S  ++   E L
Sbjct: 244 LTYNAIIRGMCKEMMVDKAFELLRSLSSR---GCKPDIITYNILLRTLLSRGKWSEGEKL 300

Query: 73  LDRVNKEKCD---ITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           +  +    C    +T  I + ++CR  G+V   ++ +R    MKE G +P    Y  ++A
Sbjct: 301 ISEMISIGCKPNVVTHSILIGTLCRD-GKVEEAVNLLR---SMKEKGLKPDAYCYDPLIA 356

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
               E +L LA  F  +M   G  P + + N ++  LC+ +G  D A ++F ++   GC 
Sbjct: 357 GFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCR-TGKADQALEVFEKLDEVGCP 415

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  +Y TL + L   G  Y A E+  ++  +   P  +TY SLI+ LC+   V+EA+ L
Sbjct: 416 PNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIEL 475

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             +M+S    PNV +Y+ ++ GLCK   ++ A+E+L  M  K  +PN  TY  L+ G+  
Sbjct: 476 LVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGF 535

Query: 309 EGKLQEAVEILDRM 322
            G   EA+E+ + +
Sbjct: 536 SGLRAEAMELANSL 549



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 136/270 (50%), Gaps = 9/270 (3%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L+N  CR GK  E+    + M  K  +P V+  T LI G   S+++ +A R+ E +   G
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
            +P+VF Y++L+ G  K      A  +L  M S+   P++VTY+ ++   C  GKL  A+
Sbjct: 135 -KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLAL 193

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           EI + +     +P    Y  +I      G    A   LDEM+  G+ P+ LT+       
Sbjct: 194 EIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTY------- 246

Query: 377 NTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N +++G+CK    ++AF++  S+ +R    D +TY+ L+     +G   +  +++ E++ 
Sbjct: 247 NAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMIS 306

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            GC P+  T S ++  L    K+ +A  LL
Sbjct: 307 IGCKPNVVTHSILIGTLCRDGKVEEAVNLL 336



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 29/170 (17%)

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--------------------- 374
           K+++  C  GKY E+  FL+ MV  G TP+ +  +  I+                     
Sbjct: 74  KLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERY 133

Query: 375 ------IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                  +N ++ G  K +    A +V   M++R    D +TY+ +I  FC +G +  + 
Sbjct: 134 GKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLAL 193

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
            I +EL+ D C P   T++ ++ A      +  A + LL E+++K +E +
Sbjct: 194 EIFEELLKDNCEPTVITYTILIEATILDGGIDVAMK-LLDEMLSKGLEPD 242


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ +I    S  +   A  +LD +     +     + S+  G  +  +  +A
Sbjct: 266 GVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEA 325

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + +KMKE G  PT  +Y T++     +  L  AF +   M    I P V++ N+LI A
Sbjct: 326 SGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHA 385

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L    G MD A  + ++M + G  PDS TY  LING CR G   +A  L  EM +K   P
Sbjct: 386 LFL-EGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQP 444

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T+VTYTSLI  L +   ++ A  LFE++  +G  P++  +++L+DG C  G   +A  LL
Sbjct: 445 TLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALL 504

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +   P+ VTY+TL+ G C+EGK++EA E+L  MK +G++PD   Y  +IS +   
Sbjct: 505 KEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKR 564

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G   +A    DEM+  G  P  LT+       N ++QGLCK    + A ++   M ++ I
Sbjct: 565 GDINDAFTIRDEMLSIGFNPTLLTY-------NALIQGLCKNQQGDLAEELLKEMVSKGI 617

Query: 404 SVDSLTYSSLITCFCKKGD 422
           + D  TY SLI    K  D
Sbjct: 618 TPDDSTYFSLIEGIGKVDD 636



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 198/404 (49%), Gaps = 30/404 (7%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F  + R    + R  DA   FD MKE G  P  +++  +L++ ++ NQ +  +  Y  M
Sbjct: 168 VFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEM 227

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
             + I+  V + N++I  LCK  G +  A      M N G  P+  TY T+I+G C  G+
Sbjct: 228 FRLKIKSTVYTFNIMINVLCK-EGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGR 286

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A+ +   M+ +   P   TY SLI+G+C+   +EEA  + E+M+  G+ P   TY++
Sbjct: 287 VEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNT 346

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DG C  G   +A      M+ +   P + TY+ L++ L  EGK+ EA  ++  M   G
Sbjct: 347 LIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSG 406

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI----------- 375
           + PD+  Y  +I+ +C  G  ++A N  DEM+  GI P  +T++  I +           
Sbjct: 407 IVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAAD 466

Query: 376 -----------------HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
                             N ++ G C   + +RAF +   M  R+I  D +TY++L+   
Sbjct: 467 DLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGR 526

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           C++G + ++  ++ E+   G  PD  +++ +++    R  +  A
Sbjct: 527 CREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDA 570



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 200/413 (48%), Gaps = 9/413 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF++MI+ L    + + A+D +  +           + ++  GY    R   A  V D M
Sbjct: 238 TFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIM 297

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K  G EP   +Y ++++ + +  +L+ A      M+EIG+ P   + N LI   C N G 
Sbjct: 298 KNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYC-NKGD 356

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  AF    EM  R   P   TY  LI+ L   GK+ EA  + K+M      P  +TY  
Sbjct: 357 LVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNI 416

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LING C+  + ++A  L +EM SKG++P + TY+SL+  L K      A +L + +I + 
Sbjct: 417 LINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREG 476

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+++ ++ L++G C  G L  A  +L  M  + + PD   Y  ++   C  GK +EA 
Sbjct: 477 ASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEAR 536

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTY 410
             L EM   GI P+ +++       NT++ G  K  D N AF +   M +   +   LTY
Sbjct: 537 ELLKEMKRRGIRPDHISY-------NTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTY 589

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           ++LI   CK      +  ++ E+V  G  PD+ T+ +++  +       +A++
Sbjct: 590 NALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEASD 642



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 183/352 (51%), Gaps = 13/352 (3%)

Query: 118 PTPKSYITVLAILVEEN--QLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCK-NSGTMD 173
           P+PKS + +L   +E     +K  F      R+ +G +  +   ++LI+A C+   G  D
Sbjct: 127 PSPKSTLHLLKQTIESRVAGVKDVFHELAITRDRLGTKSSIV-FDMLIRACCELKRG--D 183

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
            AF+ F  M  +G  P   T+  +++   +L +      L+ EM       TV T+  +I
Sbjct: 184 DAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMI 243

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           N LC+   +++A      M + GV+PNV TY++++ G C  G    A  +L +M ++   
Sbjct: 244 NVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVE 303

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P+  TY +L++G+CK GKL+EA  IL++MK  GL P A  Y  +I  +C+ G   +A  +
Sbjct: 304 PDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGY 363

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
            DEMV   I P   T++L   IH   ++G  K D   A  +   M +  I  DS+TY+ L
Sbjct: 364 RDEMVRRAILPTVSTYNL--LIHALFLEG--KMD--EADGMIKDMGDSGIVPDSITYNIL 417

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I  +C+ G+  K+  + DE++  G  P   T+++++  L  R +M+ A +L 
Sbjct: 418 INGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLF 469



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 144/273 (52%), Gaps = 10/273 (3%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRPLDAMRV 107
           ST++L+I  L    +   A+ ++  +         IT +I ++   GY R      A  +
Sbjct: 377 STYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILIN---GYCRCGNAKKAFNL 433

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            D+M   G +PT  +Y +++ +L + N++K A   +  +   G  P +   N LI   C 
Sbjct: 434 HDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCA 493

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N G +D AF + +EM  R   PD  TY TL+ G CR GK+ EA+EL KEM+ +   P  +
Sbjct: 494 N-GNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHI 552

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +Y +LI+G  +   + +A  + +EM S G  P + TY++L+ GLCK      A ELL+ M
Sbjct: 553 SYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEM 612

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           +SK   P+  TY +L+ G+   GK+ ++ E  D
Sbjct: 613 VSKGITPDDSTYFSLIEGI---GKVDDSSEASD 642


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 197/392 (50%), Gaps = 30/392 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M      P+   +    + +    Q  L   F + M   GI   + +LN++I
Sbjct: 48  DAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMI 107

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+   T   A+ +  ++   G  PD+ T+ TLINGLC   K+ EA  L   M    C
Sbjct: 108 NCFCRCCKTC-FAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGC 166

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY S++NG+C+S     A+ L  +M  + V+ +VFTYS+++D LC+ GC   A+ 
Sbjct: 167 QPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAIS 226

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M +K  + ++VTY++L+ GLCK GK  + V++L  M  + + P+   +  +I  F 
Sbjct: 227 LFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFV 286

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWS------------------LHIRIHN------- 377
             GK QEA     EM+  GI+PN +T++                  L + + N       
Sbjct: 287 KEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIV 346

Query: 378 ---TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              ++++G CK    +   +++  +  R +  +++TYS L+  FC+ G +  +  +  E+
Sbjct: 347 TFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEM 406

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V  G LPD  T+  ++  L D  K+ +A E+ 
Sbjct: 407 VSLGVLPDVMTYGILLDGLCDNGKLEKALEIF 438



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 219/457 (47%), Gaps = 48/457 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D +TF+ +I+ L   ++   A  L+ R+ +  C      + SI  G  +      A
Sbjct: 130 GYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLA 189

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  KM E   +    +Y T++  L  +  +  A   ++ M   GI+  + + N L+  
Sbjct: 190 LDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGG 249

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA--- 221
           LCK +G  +   ++ ++M +R   P+  T+  LI+   + GK+ EA EL+KEM TK    
Sbjct: 250 LCK-AGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISP 308

Query: 222 --------------------------------CSPTVVTYTSLINGLCQSKSVEEAMRLF 249
                                           CSP +VT+TSLI G C+ K V+E M+LF
Sbjct: 309 NTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLF 368

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            ++  +G+  N  TYS L+ G C+ G    A EL Q M+S    P+++TY  LL+GLC  
Sbjct: 369 RKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDN 428

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           GKL++A+EI + ++   +  D  +Y  II   C  GK ++A N    +   G+ PN +T+
Sbjct: 429 GKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 488

Query: 370 SLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           ++       ++ GLCK        + L  M       +  TY++LI    + GD+  SA+
Sbjct: 489 TV-------MISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAK 541

Query: 429 IVDELVLDGCLPDEGTWSAVM----TALWDRRKMRQA 461
           +++E+   G   D  +   V+    +A+W  ++ R++
Sbjct: 542 LIEEMKSCGFSADASSIKMVIDMLSSAVWWFKEPRRS 578



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 148/302 (49%), Gaps = 8/302 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +F+EM      P    +    +G+    +     +  K+ME    +  + T   +
Sbjct: 47  DDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIM 106

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+      A  +  ++   G EP+  T+++L++GLC     S+A+ L+  M+    
Sbjct: 107 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGC 166

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +PN+VTY++++NG+CK G    A+++L +M  + +K D   Y  II   C  G    A +
Sbjct: 167 QPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAIS 226

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
              EM   GI  + +T+       N++V GLCK    N   Q+   M +R I  + +T++
Sbjct: 227 LFKEMETKGIKSSLVTY-------NSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFN 279

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            LI  F K+G + ++  +  E++  G  P+  T++++M     + ++ +A  +L L + N
Sbjct: 280 VLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRN 339

Query: 472 KC 473
            C
Sbjct: 340 NC 341


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 134/443 (30%), Positives = 218/443 (49%), Gaps = 32/443 (7%)

Query: 42  YANGFRHD-NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           YA+G  HD    F  M+   V  N        L   NK        +  ++C+  G V  
Sbjct: 163 YAHGHTHDARQLFDQMLHTHVFPN--------LAAFNK--------VLHALCK-RGDV-- 203

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            L+A  +  K+ + G      +Y   +  L E  +L  A R    MR   + P V + N 
Sbjct: 204 -LEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNT 261

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI+ LCK S   +A     R M N+GC PD +TY T+I+G C++  + EA EL K+   K
Sbjct: 262 LIRGLCKKSMPQEA-MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK 320

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  VTY SLINGLC    VE A+ LF E ++KG++P++  Y+SL+ GLC  G    A
Sbjct: 321 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 380

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           ++++  M  +   P+I TY+ ++NGLCK G + +A  +++   ++G  PD   +  +I  
Sbjct: 381 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 440

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           +C   K   A   ++ M   GI P+ +T+       N+V+ GLCK    N   + +  M 
Sbjct: 441 YCKRLKLDSALQLVERMWEYGIAPDTITY-------NSVLNGLCKAGKVNEVNETFQEMI 493

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            +    + +TY+ LI  FC+   + ++++++ ++  +G  PD  +++ ++     R    
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC-RNGDL 552

Query: 460 QAAELLLLELMNKCVEAEVDIQN 482
           + A LL  +L  K   A  D  N
Sbjct: 553 EGAYLLFQKLEEKGYSATADTFN 575



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 192/367 (52%), Gaps = 14/367 (3%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++++  R Y R  R  DA+  F++M  F C P   +Y  ++  LV+      A + Y  M
Sbjct: 53  LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRM 112

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G+ P + +  + +++ C  +     A ++ R +P+RG       Y T++ GL   G 
Sbjct: 113 LAAGVSPDLHTHTIRLRSFCL-TARPHIALRLLRALPHRGAV----AYCTVVCGLYAHGH 167

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
            ++A++LF +M      P +  +  +++ LC+   V EA  L  ++  +G+  N+FTY+ 
Sbjct: 168 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 227

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            + GLC+ G   +A+ L+  M +    P++VTY+TL+ GLCK+   QEA+  L RM  QG
Sbjct: 228 WIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 286

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-K 385
             PD   Y  II  +C I   QEA   L + V  G  P+++T+        +++ GLC +
Sbjct: 287 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYC-------SLINGLCAE 339

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            D  RA +++   + + I  D + Y+SL+   C +G I  + ++++E+  +GC PD  T+
Sbjct: 340 GDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTY 399

Query: 446 SAVMTAL 452
           + V+  L
Sbjct: 400 NIVINGL 406



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 214/438 (48%), Gaps = 10/438 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I  L   +  + A   L R+  + C   +  + +I  GY ++    +A  + 
Sbjct: 255 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 314

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
                 G  P   +Y +++  L  E  ++ A   +   +  GI+P +   N L+K LC  
Sbjct: 315 KDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ 374

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A ++  EM   GC PD  TY  +INGLC++G I +A  +  +   K   P V T
Sbjct: 375 -GLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 433

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           + +LI+G C+   ++ A++L E M   G+ P+  TY+S+++GLCK G  ++  E  Q MI
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 493

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K   PN +TY+ L+   C+  K++EA +++ +M  +GL PDA  +  +I  FC  G  +
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 553

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDS 407
            A     ++   G +    T+       NT++     K + + A +++  M ++    DS
Sbjct: 554 GAYLLFQKLEEKGYSATADTF-------NTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS 606

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            TY  LI   CK  ++ ++   + E++  G +P   T+  V+ +L    ++ QA  ++ +
Sbjct: 607 YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHI 666

Query: 468 ELMNKCVEAEVD-IQNQD 484
            +    V   VD I N D
Sbjct: 667 MVKIGVVPEVVDTILNAD 684



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 156/327 (47%), Gaps = 5/327 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRGYGRVHRPL 102
           GF  D  T+  +I+ L +      A +L +    +  K DI   ++ S+ +G       L
Sbjct: 321 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV--VYNSLVKGLCLQGLIL 378

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A++V ++M E GC P  ++Y  V+  L +   +  A          G  P V + N LI
Sbjct: 379 HALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLI 438

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK    +D+A ++   M   G  PD+ TY +++NGLC+ GK+ E  E F+EM  K C
Sbjct: 439 DGYCKRL-KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 497

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +TY  LI   C+S  +EEA ++  +M  +G+ P+  ++++L+ G C+ G    A  
Sbjct: 498 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYL 557

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L Q +  K +     T++TL+     +  +  A +I D M  +G + D+  Y  +I   C
Sbjct: 558 LFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSC 617

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTW 369
                  A   L EM+  G  P+  T+
Sbjct: 618 KTANVDRAYMHLVEMIKKGFIPSMSTF 644


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 134/443 (30%), Positives = 218/443 (49%), Gaps = 32/443 (7%)

Query: 42  YANGFRHD-NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           YA+G  HD    F  M+   V  N        L   NK        +  ++C+  G V  
Sbjct: 162 YAHGHTHDARQLFDQMLHTHVFPN--------LAAFNK--------VLHALCK-RGDV-- 202

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            L+A  +  K+ + G      +Y   +  L E  +L  A R    MR   + P V + N 
Sbjct: 203 -LEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNT 260

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI+ LCK S   +A     R M N+GC PD +TY T+I+G C++  + EA EL K+   K
Sbjct: 261 LIRGLCKKSMPQEA-MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK 319

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  VTY SLINGLC    VE A+ LF E ++KG++P++  Y+SL+ GLC  G    A
Sbjct: 320 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 379

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           ++++  M  +   P+I TY+ ++NGLCK G + +A  +++   ++G  PD   +  +I  
Sbjct: 380 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 439

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           +C   K   A   ++ M   GI P+ +T+       N+V+ GLCK    N   + +  M 
Sbjct: 440 YCKRLKLDSALQLVERMWEYGIAPDTITY-------NSVLNGLCKAGKVNEVNETFQEMI 492

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            +    + +TY+ LI  FC+   + ++++++ ++  +G  PD  +++ ++     R    
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC-RNGDL 551

Query: 460 QAAELLLLELMNKCVEAEVDIQN 482
           + A LL  +L  K   A  D  N
Sbjct: 552 EGAYLLFQKLEEKGYSATADTFN 574



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 192/367 (52%), Gaps = 14/367 (3%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++++  R Y R  R  DA+  F++M  F C P   +Y  ++  LV+      A + Y  M
Sbjct: 52  LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRM 111

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G+ P + +  + +++ C  +     A ++ R +P+RG       Y T++ GL   G 
Sbjct: 112 LAAGVSPDLHTHTIRLRSFCL-TARPHIALRLLRALPHRGAV----AYCTVVCGLYAHGH 166

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
            ++A++LF +M      P +  +  +++ LC+   V EA  L  ++  +G+  N+FTY+ 
Sbjct: 167 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 226

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            + GLC+ G   +A+ L+  M +    P++VTY+TL+ GLCK+   QEA+  L RM  QG
Sbjct: 227 WIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 285

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-K 385
             PD   Y  II  +C I   QEA   L + V  G  P+++T+        +++ GLC +
Sbjct: 286 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYC-------SLINGLCAE 338

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            D  RA +++   + + I  D + Y+SL+   C +G I  + ++++E+  +GC PD  T+
Sbjct: 339 GDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTY 398

Query: 446 SAVMTAL 452
           + V+  L
Sbjct: 399 NIVINGL 405



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 214/438 (48%), Gaps = 10/438 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I  L   +  + A   L R+  + C   +  + +I  GY ++    +A  + 
Sbjct: 254 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 313

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
                 G  P   +Y +++  L  E  ++ A   +   +  GI+P +   N L+K LC  
Sbjct: 314 KDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ 373

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A ++  EM   GC PD  TY  +INGLC++G I +A  +  +   K   P V T
Sbjct: 374 -GLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 432

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           + +LI+G C+   ++ A++L E M   G+ P+  TY+S+++GLCK G  ++  E  Q MI
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 492

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K   PN +TY+ L+   C+  K++EA +++ +M  +GL PDA  +  +I  FC  G  +
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 552

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDS 407
            A     ++   G +    T+       NT++     K + + A +++  M ++    DS
Sbjct: 553 GAYLLFQKLEEKGYSATADTF-------NTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS 605

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            TY  LI   CK  ++ ++   + E++  G +P   T+  V+ +L    ++ QA  ++ +
Sbjct: 606 YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHI 665

Query: 468 ELMNKCVEAEVD-IQNQD 484
            +    V   VD I N D
Sbjct: 666 MVKIGVVPEVVDTILNAD 683



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 156/327 (47%), Gaps = 5/327 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRGYGRVHRPL 102
           GF  D  T+  +I+ L +      A +L +    +  K DI   ++ S+ +G       L
Sbjct: 320 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV--VYNSLVKGLCLQGLIL 377

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A++V ++M E GC P  ++Y  V+  L +   +  A          G  P V + N LI
Sbjct: 378 HALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLI 437

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK    +D+A ++   M   G  PD+ TY +++NGLC+ GK+ E  E F+EM  K C
Sbjct: 438 DGYCKRL-KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 496

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +TY  LI   C+S  +EEA ++  +M  +G+ P+  ++++L+ G C+ G    A  
Sbjct: 497 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYL 556

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L Q +  K +     T++TL+     +  +  A +I D M  +G + D+  Y  +I   C
Sbjct: 557 LFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSC 616

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTW 369
                  A   L EM+  G  P+  T+
Sbjct: 617 KTANVDRAYMHLVEMIKKGFIPSMSTF 643


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 193/392 (49%), Gaps = 17/392 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPL 102
           GF  D  +++ +I     A +   A +L   + +       D++   ++ +G     R  
Sbjct: 194 GFSQDAVSYAALIEGFCEAGRIDEALELFREMTQP------DMYTHAALVKGLCDAGRGE 247

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           + + +  KMKE G  PT ++Y  ++ +   E + + A +    M + G+ PCV +  +++
Sbjct: 248 EGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVV 307

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A C+  G M  A ++F  M  +GC P+ +TY  ++ G C  GK+Y+A  L  +M     
Sbjct: 308 NAYCRE-GRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGV 366

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY  LI G C    +  A RL   M   G+  + +TY+ L+D LCK G   +A  
Sbjct: 367 EPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACS 426

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   +  +  RPN VT++T++NGLCK GK   A   L+ M   G  PD   Y   I   C
Sbjct: 427 LFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLC 486

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHI-RIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
                QE   F+DEM+   + P+ + +++ I R+ N    GL       A +++  M ++
Sbjct: 487 KTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGL-------ATRIWGQMVSQ 539

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             S D +TY++ +  +C +G + ++  +V E+
Sbjct: 540 GCSPDVVTYTTSVRAYCNEGRLDEAENVVTEM 571



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 168/352 (47%), Gaps = 49/352 (13%)

Query: 138 LAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           L  R + HM R     P  A+ N LI+ALC+ +    A  +    M   G  PD++T+ +
Sbjct: 111 LMLRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQ-RYLSLMVRSGWRPDAFTFNS 169

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           LI G CR  ++  A +LF +M  +  S   V+Y +LI G C++  ++EA+ LF EM    
Sbjct: 170 LILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREM---- 225

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN--------------------- 295
            +P+++T+++L+ GLC  G   + + +LQ M     RP                      
Sbjct: 226 TQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAE 285

Query: 296 --------------IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
                         +VT + ++N  C+EG++  AV + + M+ +G +P+   Y  I+  F
Sbjct: 286 KILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGF 345

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRN 400
           C+ GK  +A   LD+M   G+ P+ +T++L IR       G C       AF++   M  
Sbjct: 346 CNAGKVYKAMALLDQMRECGVEPDVVTYNLLIR-------GQCIDGHIGSAFRLLRLMEG 398

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             ++ D  TY+ LI   CK G + ++  + D L   G  P+  T++ V+  L
Sbjct: 399 NGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGL 450



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 193/426 (45%), Gaps = 15/426 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T +++++      +   A  + + +  + C+     + +I +G+    +   AM + D+M
Sbjct: 302 TCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQM 361

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +E G EP   +Y  ++     +  +  AFR  R M   G+     + NVLI ALCK +G 
Sbjct: 362 RECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCK-TGK 420

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F  +  RG  P+S T+ T+INGLC+ GK   A    + M +   +P   TY+ 
Sbjct: 421 VDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSP 480

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            I  LC++K  +E +   +EM  K V+P+   Y+ +++ L        A  +   M+S+ 
Sbjct: 481 FIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQG 540

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++VTY+T +   C EG+L EA  ++  MK      DA  Y  +I     IG+   A 
Sbjct: 541 CSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAV 600

Query: 352 NFLDEMVLGGITPNRLTWSL------------HIRIHNTVVQGLCKTDPNRAFQVYLSMR 399
             L  M      PN  T+ +            H+ +  T V      +    F+++  M+
Sbjct: 601 TILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWK--TIELADVFELFELMK 658

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
             S+   + TY S++  F ++  + +   +V  +  +    +E  ++A++      R   
Sbjct: 659 KNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYS 718

Query: 460 QAAELL 465
            A  LL
Sbjct: 719 DAWALL 724



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 166/405 (40%), Gaps = 60/405 (14%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +FD ++  G  P   ++ TV+  L +  +  +A  F  +M   G  P   + +  I
Sbjct: 423 EACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFI 482

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           + LCK  G+ +  F I  EM  +   P +  Y  +IN L        A  ++ +M ++ C
Sbjct: 483 ENLCKTKGSQEGLFFI-DEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGC 541

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP VVTYT+ +   C    ++EA  +  EM+      +   Y++L+DG    G + +A+ 
Sbjct: 542 SPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVT 601

Query: 283 LLQMMIS----------------------KRHRP-------------------------- 294
           +L+ M                          H P                          
Sbjct: 602 ILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNS 661

Query: 295 ---NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              +  TY ++L G  +E +L E   ++  MK + L  +  +Y  +++CFC +  Y +A 
Sbjct: 662 VPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAW 721

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVDSLTY 410
             L  M+  G  PN +        +  ++ GL  +   +RA +++ S R +  + D + +
Sbjct: 722 ALLCSMIGHGFLPNLI-------FYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVW 774

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             +I  F +KG       ++  L    C P + T++ +   L  R
Sbjct: 775 KVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYAMLTEELPTR 819



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 146/373 (39%), Gaps = 63/373 (16%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA----EDLLDRVNKEKCDI 83
           V++A  +FD    EY  G R ++ TF+ +I+ L  A +F  A    E+++          
Sbjct: 421 VDEACSLFDGL--EY-RGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYT 477

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
                 ++C+  G      + +   D+M +   +P+  +Y  V+  L  E    LA R +
Sbjct: 478 YSPFIENLCKTKGSQ----EGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIW 533

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M   G  P V +    ++A C N G +D A  +  EM       D+  Y TLI+G   
Sbjct: 534 GQMVSQGCSPDVVTYTTSVRAYC-NEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTS 592

Query: 204 LGK---------------------------------------------------IYEAKE 212
           +G+                                                   + +  E
Sbjct: 593 IGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFE 652

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           LF+ M+  +   +  TY S++ G  + + ++E   L   M+ + +  N   Y++L++  C
Sbjct: 653 LFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFC 712

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K    S A  LL  MI     PN++ Y  LL+GL  EG+   A EI    + +    D  
Sbjct: 713 KLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEI 772

Query: 333 LYGKIISCFCDIG 345
           ++  II  F   G
Sbjct: 773 VWKVIIDGFIRKG 785



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/289 (18%), Positives = 115/289 (39%), Gaps = 18/289 (6%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++++I++L +   +  A  +  ++  + C      + +  R Y    R  +A  V  +MK
Sbjct: 513 YTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMK 572

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP--------------CVASL 158
           +        +Y T++       Q   A    +HM  +   P                 + 
Sbjct: 573 KCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAE 632

Query: 159 NVLIKAL-CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           +V +KA     +  +   F++F  M        + TY +++ G     ++ E   L   M
Sbjct: 633 HVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLM 692

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           + +        Y +L+N  C+ +   +A  L   M   G  PN+  Y  L+ GL   G +
Sbjct: 693 KEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQA 752

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL---QEAVEILDRMK 323
            +A E+ +    K +  + + +  +++G  ++G      + + +L++MK
Sbjct: 753 DRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMK 801


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 212/417 (50%), Gaps = 34/417 (8%)

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           DRV+ +    T  IF  + R Y  + +P +A+  F  +KE G  P  ++   +L++ ++ 
Sbjct: 139 DRVDAK----TTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKL 194

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N+ ++A+  Y  M  + I+  + + N++I  LCK  G +  A +    M   G  P+  T
Sbjct: 195 NRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCK-EGKLKKAKEFIGHMETLGVKPNVVT 253

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y T+I+G C  GK   A+ +F+ M+ K   P   TY S I+GLC+   +EEA  L  +M 
Sbjct: 254 YNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKML 313

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             G+ PN  TY++L+DG C  G   +A      MISK    ++VTY+  ++ L  EG++ 
Sbjct: 314 EGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMG 373

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS--- 370
           +A  ++  M+ +G+ PDA  +  +I+ +C  G  + A   LDEMV  GI P  +T++   
Sbjct: 374 DADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLI 433

Query: 371 -------------------------LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404
                                      I + N ++ G C   + +RAFQ+   M N  + 
Sbjct: 434 YVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVL 493

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            D +TY++L+  +C++G + ++ +++DE+   G  PD  +++ +++    R  M+ A
Sbjct: 494 PDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDA 550



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 205/416 (49%), Gaps = 54/416 (12%)

Query: 42  YANGFRHDNS----TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY-- 95
           YA  FR +      TF++MI+ L    + + A++ +  +           + +I  G+  
Sbjct: 204 YAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCL 263

Query: 96  -GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
            G+  R   A  +F  MK+ G EP   +Y + ++ L +E +L+ A      M E G+ P 
Sbjct: 264 RGKFQR---ARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPN 320

Query: 155 VASLNVLIKALCKNSGTMDAAF-----------------------------------KIF 179
             + N LI   C N G +D A+                                    + 
Sbjct: 321 AVTYNALIDGYC-NKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMI 379

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           +EM  +G  PD+ T+  LING CR G    A  L  EM  K   PT+VTYTSLI  L + 
Sbjct: 380 KEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKR 439

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             ++EA  LF +++ +G+ P++  +++L+DG C  G   +A +LL+ M + +  P+ +TY
Sbjct: 440 NRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITY 499

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           +TL+ G C+EGK++EA ++LD MK +G+KPD   Y  +IS +   G  ++A    DEM+ 
Sbjct: 500 NTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMT 559

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414
            G  P  LT+       N ++QGLCK  +   A ++   M ++ I+ D  TY S+I
Sbjct: 560 TGFDPTILTY-------NALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSII 608



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 208/425 (48%), Gaps = 51/425 (12%)

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           N E C+    +FL       +++R   A  ++ +M       +  ++  ++ +L +E +L
Sbjct: 180 NIETCNQMLSLFL-------KLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKL 232

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           K A  F  HM  +G++P V + N +I   C   G    A  IF+ M ++G  PD YTY +
Sbjct: 233 KKAKEFIGHMETLGVKPNVVTYNTIIHGHCLR-GKFQRARVIFQTMKDKGLEPDCYTYNS 291

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM---------- 246
            I+GLC+ G++ EA  L  +M      P  VTY +LI+G C    +++A           
Sbjct: 292 FISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKG 351

Query: 247 -------------------------RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
                                     + +EMR KG+ P+  T++ L++G C+ G + +A 
Sbjct: 352 IMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAF 411

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL  M+ K  +P +VTY++L+  L K  +++EA  +  +++ +GL PD  ++  +I   
Sbjct: 412 GLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGH 471

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  G    A   L EM    + P+ +T+       NT++QG C+      A Q+   M+ 
Sbjct: 472 CANGNIDRAFQLLKEMDNMKVLPDEITY-------NTLMQGYCREGKVEEARQLLDEMKR 524

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I  D ++Y++LI+ + K+GD+  + R+ DE++  G  P   T++A++  L   ++   
Sbjct: 525 RGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEH 584

Query: 461 AAELL 465
           A ELL
Sbjct: 585 AEELL 589



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 148/308 (48%), Gaps = 43/308 (13%)

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           +  L+   C L K  EA E F  ++ K   P + T   +++   +    + A  L+ EM 
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMF 208

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
              +  +++T++ +++ LCK G   +A E +  M +   +PN+VTY+T+++G C  GK Q
Sbjct: 209 RMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQ 268

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            A  I   MK +GL+PD   Y   IS  C  G+ +EA+  + +M+ GG+ PN +T+    
Sbjct: 269 RARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTY---- 324

Query: 374 RIHNTVVQGLC-KTDPNRAF-----------------------------------QVYLS 397
              N ++ G C K D ++A+                                    +   
Sbjct: 325 ---NALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKE 381

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           MR + +  D++T++ LI  +C+ GD  ++  ++DE+V  G  P   T+++++  L  R +
Sbjct: 382 MREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNR 441

Query: 458 MRQAAELL 465
           M++A  L 
Sbjct: 442 MKEADALF 449


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 234/459 (50%), Gaps = 32/459 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG  H+  T ++MI+      +   A  +L +V K   +     F ++ +G     +  +
Sbjct: 107 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSE 166

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ + D+M E GC+P   +Y +++  +       LA    R M E  ++  V + + +I 
Sbjct: 167 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIID 226

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LC++ G +DAA  +F+EM  +G      TY +L+ GLC+ GK  +   L K+M ++   
Sbjct: 227 SLCRD-GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV 285

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+T+  L++   +   ++EA  L++EM ++G+ PN+ TY++LMDG C     S+A  +
Sbjct: 286 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 345

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+  +  P+IVT+++L+ G C   ++ + +++   +  +GL  +A  Y  ++  FC 
Sbjct: 346 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 405

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWS----------------------------LHIRI 375
            GK + A     EMV  G+ P+ +T+                             L I +
Sbjct: 406 SGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM 465

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           + T+++G+CK      A+ ++ S+  + +  + +TY+ +I+  CKKG + ++  ++ ++ 
Sbjct: 466 YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 525

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            DG  P++ T++ ++ A      +  +A+  L+E M  C
Sbjct: 526 EDGNAPNDCTYNTLIRAHLRDGDLTASAK--LIEEMKSC 562



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 209/445 (46%), Gaps = 46/445 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D +TF+ +I  L    +   A  L+DR+ +  C      + SI  G  R      A
Sbjct: 143 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 202

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  KM+E   +    +Y T++  L  +  +  A   ++ M   GI+  V + N L++ 
Sbjct: 203 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 262

Query: 165 LCK----------------------------------NSGTMDAAFKIFREMPNRGCTPD 190
           LCK                                    G +  A ++++EM  RG +P+
Sbjct: 263 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 322

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY TL++G C   ++ EA  +   M    CSP +VT+TSLI G C  K V++ M++F 
Sbjct: 323 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 382

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            +  +G+  N  TYS L+ G C+ G    A EL Q M+S    P+++TY  LL+GLC  G
Sbjct: 383 NISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 442

Query: 311 KLQEAVEILDRMKLQGLKPDAG--LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           KL++A+EI +   LQ  K D G  +Y  II   C  GK ++A N    +   G+ PN +T
Sbjct: 443 KLEKALEIFE--DLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 500

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +++       ++ GLCK        + L  M     + +  TY++LI    + GD+  SA
Sbjct: 501 YTV-------MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 553

Query: 428 RIVDELVLDGCLPDEGTWSAVMTAL 452
           ++++E+   G   D  +   V+  L
Sbjct: 554 KLIEEMKSCGFSADASSIKMVIDML 578



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 194/392 (49%), Gaps = 30/392 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M      P+   +    + +    Q  L   F + +   GI   + +LN++I
Sbjct: 61  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 120

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+   T   A+ +  ++   G  PD+ T+ TLI GL   GK+ EA  L   M    C
Sbjct: 121 NCFCRCCKTC-FAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 179

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY S++NG+C+S     A+ L  +M  + V+ +VFTYS+++D LC+ GC   A+ 
Sbjct: 180 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 239

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M +K  + ++VTY++L+ GLCK GK  +   +L  M  + + P+   +  ++  F 
Sbjct: 240 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 299

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWS------------------LHIRIHN------- 377
             GK QEA     EM+  GI+PN +T++                  L + + N       
Sbjct: 300 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 359

Query: 378 ---TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              ++++G C     +   +V+ ++  R +  +++TYS L+  FC+ G I  +  +  E+
Sbjct: 360 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM 419

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V  G LPD  T+  ++  L D  K+ +A E+ 
Sbjct: 420 VSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 451



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 148/302 (49%), Gaps = 8/302 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +F+EM      P    +    + + R  +     +  K++E    +  + T   +
Sbjct: 60  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 119

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+      A  +  ++   G EP+  T+++L+ GL   G  S+A+ L+  M+    
Sbjct: 120 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 179

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P++VTY++++NG+C+ G    A+++L +M+ + +K D   Y  II   C  G    A +
Sbjct: 180 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 239

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
              EM   GI  + +T+       N++V+GLCK    N    +   M +R I  + +T++
Sbjct: 240 LFKEMETKGIKSSVVTY-------NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 292

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            L+  F K+G + ++  +  E++  G  P+  T++ +M     + ++ +A  +L L + N
Sbjct: 293 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN 352

Query: 472 KC 473
           KC
Sbjct: 353 KC 354



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           A EL + MI +   PN +TYS+L++G CKE +L EA ++LD M  +G
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG 764



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +V  A  L +EM  +G+ PN  TYSSL+DG CK     +A ++L +M++K
Sbjct: 714 TVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTK 763



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 190 DSYTYGTLINGLCRLGK---IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           D+  Y      + R G+   +  A+EL KEM  +  +P  +TY+SLI+G C+   ++EA 
Sbjct: 695 DAVHYAHRAGRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEAN 754

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           ++ + M +KG     +  + LM    KG
Sbjct: 755 QMLDLMVTKGDSDIRYLLAGLMRKKRKG 782



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           T+  A ++ +EM  RG  P++ TY +LI+G C+  ++ EA ++   M TK  S
Sbjct: 714 TVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKGDS 766


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 212/432 (49%), Gaps = 22/432 (5%)

Query: 28  VNKALVIFDSATAEY--ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +++AL +FD     Y  ++G   D  ++S +I  L  A +   A +   R+    C    
Sbjct: 196 IDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNV 255

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + S+  G  +V RP + + +   MKE G       +  +L  L + ++ + A +F+  
Sbjct: 256 VTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFER 315

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           + + G +P V + NV +  LCK +G +D A++I  EM     TPD  TY ++I+G C+ G
Sbjct: 316 LLKSGKKPNVVTYNVAVHGLCK-AGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAG 374

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ +A ++F  M    C P  VT+ +L++G  + K   EA R+ E+M + G  P + TY+
Sbjct: 375 RMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYN 434

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            LMD +C       A+E+   M  K+ +P+  TY+ L+  LC+  ++ EA E LD M+  
Sbjct: 435 VLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEAD 494

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP-----NRLTWSLHIRIHNTVV 380
            + P+  +   ++   C  G+  EA + LD +V  G  P       L   L++R      
Sbjct: 495 NVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAA 554

Query: 381 QGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
             L              +R+     D+ TYS  +   CK G   ++  +++++VL G  P
Sbjct: 555 SKL--------------LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRP 600

Query: 441 DEGTWSAVMTAL 452
           DEGT+ AV+ +L
Sbjct: 601 DEGTYVAVLRSL 612



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 228/463 (49%), Gaps = 17/463 (3%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           +++ +T     ++++  +D + A   F  A  +   GF+H+  T +++++  V A +   
Sbjct: 37  YASTVTPEVAGRVLQQVEDPDVAWTFFQWAGNK--PGFQHNAYTCAVLLNAFVKAKRHEE 94

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           A  LL    +  C   E ++ ++  G+ +  +   A  + D+MKE G +     + T++ 
Sbjct: 95  AHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQ 154

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR--- 185
            L  + ++  A   ++ M E    P V + N ++  LCK +  +D A ++F +M  R   
Sbjct: 155 GLCRKGRIDEALEQFKSMGE-ECSPNVITYNTVVNGLCK-ANRIDEALELFDDMEKRYEA 212

Query: 186 --GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             GC PD  +Y T+I+ LC+  ++ +A E FK M    C+P VVTY+SLI+GLC+     
Sbjct: 213 SHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPS 272

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           E + L   M+ KG   N+  +++++  L K     +A +  + ++    +PN+VTY+  +
Sbjct: 273 ECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAV 332

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +GLCK G++ EA  IL  M    + PD   Y  II  FC  G+  +A +    M++    
Sbjct: 333 HGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECI 392

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           P+ +T+        T++ G  +   +R AF+V+  M N        TY+ L+ C C    
Sbjct: 393 PHPVTFM-------TLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADS 445

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  +  I  ++      PD  T++ ++  L   R++ +A E L
Sbjct: 446 VESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFL 488



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 168/348 (48%), Gaps = 50/348 (14%)

Query: 173 DAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           D A+  F+   N+ G   ++YT   L+N   +  +  EA  L KE     C P  + YT+
Sbjct: 57  DVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTT 116

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +ING C++  V++A  L +EM+ +GV+ +V  +S+L+ GLC+ G   +A+E  + M  + 
Sbjct: 117 VINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM-GEE 175

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK-----LQGLKPDAGLYGKIISCFCDIGK 346
             PN++TY+T++NGLCK  ++ EA+E+ D M+       G +PD   Y  +I   C   +
Sbjct: 176 CSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQR 235

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A  +   M   G  PN +T+S       +++ GLCK D P+   ++ L M+ +   +
Sbjct: 236 VDKAYEYFKRMRAVGCAPNVVTYS-------SLIDGLCKVDRPSECLELLLHMKEKGFGI 288

Query: 406 D-----------------------------------SLTYSSLITCFCKKGDIHKSARIV 430
           +                                    +TY+  +   CK G + ++ RI+
Sbjct: 289 NIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRIL 348

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            E+V     PD  T+S+++       +M +A ++    ++++C+   V
Sbjct: 349 LEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPV 396



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 184/381 (48%), Gaps = 16/381 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRP 101
           +G + +  T+++ +  L  A +   A  +L  + + K  +T D+  + SI  G+ +  R 
Sbjct: 319 SGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESK--VTPDVITYSSIIDGFCKAGRM 376

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A  VF +M    C P P +++T+L    E  + + AFR +  M   G  P + + NVL
Sbjct: 377 DKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVL 436

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  +C  + ++++A +I+ +M  +   PD  TY  LI  LCR  ++ EAKE    ME   
Sbjct: 437 MDCVC-GADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADN 495

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P      +L+  LC+   V+EA  + + +   G +P   T+  L++ L        A 
Sbjct: 496 VVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAAS 555

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +LL+   S     +  TYS  +  +CK GK  EAVE++++M L+G++PD G Y  ++   
Sbjct: 556 KLLR---SPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSL 612

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
           C + + + A    ++M   G  P  +T++L       ++   C  D  + AF+++ +M  
Sbjct: 613 CGLDRVESAIAEFEKMASRGCAPGLVTYTL-------LIGEACSADMADEAFRIFEAMVA 665

Query: 401 RSISVDSLTYSSLITCFCKKG 421
              +  + T  +L +C    G
Sbjct: 666 AGFTPQAQTMRTLSSCLRDAG 686


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H+  T +++++     +Q   A   L ++ K   +     F S+  G+ R  R  DA
Sbjct: 111 GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDA 170

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +FD+M E G EP    Y T++  L +  Q+  A      M   GI+P   + N LI  
Sbjct: 171 LYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISG 230

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC NSG  D A ++   M  R   PD +T+  LI+   + G+I EA+EL++EM  ++  P
Sbjct: 231 LC-NSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDP 289

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VTY+ LI GLC    ++EA ++F  M SKG  P+V TYS L++G CK       M+L 
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  +    N VTY+ L+ G C+ GKL  A EI   M   G+ P+   Y  ++   CD 
Sbjct: 350 CEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDN 409

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           GK ++A   L +M   G+  + +T       +N +++G+CK  +   A+ +Y S+  + +
Sbjct: 410 GKIEKALVILADMQKSGMDADIVT-------YNIIIRGMCKAGEVADAWDLYCSLNLKGL 462

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           + D  TY++++    KKG   ++  +  ++  DG LP+E
Sbjct: 463 TPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPNE 501



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 183/364 (50%), Gaps = 10/364 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+    KM + G EP   ++ ++L      +++  A   +  M E+G +P V   N +I 
Sbjct: 135 ALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIID 194

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  +D A  +   M   G  PD+ TY +LI+GLC  G+  +A  +   M  +   
Sbjct: 195 GLCK-SKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIY 253

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V T+ +LI+   +   + EA  L+EEM  + ++P++ TYS L+ GLC      +A ++
Sbjct: 254 PDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQM 313

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M+SK   P++VTYS L+NG CK  K++  +++   M  +G+  +   Y  +I  +C 
Sbjct: 314 FGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCR 373

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
            GK   A      MV  G+ PN +T+       N ++ GLC      +A  +   M+   
Sbjct: 374 AGKLNVAEEIFKWMVFCGVPPNIITY-------NVLLHGLCDNGKIEKALVILADMQKSG 426

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D +TY+ +I   CK G++  +  +   L L G  PD  T++A+M  L+ ++ +R  A
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLY-KKGLRGEA 485

Query: 463 ELLL 466
           + L 
Sbjct: 486 DALF 489



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 193/383 (50%), Gaps = 14/383 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPK--SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           D++ +F  M +  C P P    +  +L+ + +  +  +    +  M+ +GI   + + N+
Sbjct: 64  DSLDLFFHMVQ--CRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+   C+ S  +  A     +M   G  PD  T+G+L+NG CR  +IY+A  +F  M   
Sbjct: 122 LLNCFCRCS-QLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEM 180

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P VV Y ++I+GLC+SK V+ A+ L   M   G+ P+  TY+SL+ GLC  G    A
Sbjct: 181 GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDA 240

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             ++  M  +   P++ T++ L++   KEG++ EA E+ + M  + L PD   Y  +I  
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYG 300

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
            C   +  EA      MV  G  P+ +T+S+       ++ G CK+       +++  M 
Sbjct: 301 LCMYSRLDEAEQMFGFMVSKGCFPDVVTYSI-------LINGYCKSKKVEHGMKLFCEMS 353

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            R +  +++TY+ LI  +C+ G ++ +  I   +V  G  P+  T++ ++  L D  K+ 
Sbjct: 354 QRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIE 413

Query: 460 QAAELLLLELMNKCVEAEVDIQN 482
           +A  ++L ++    ++A++   N
Sbjct: 414 KAL-VILADMQKSGMDADIVTYN 435



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 146/295 (49%), Gaps = 8/295 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D +  +F  M      P    +  L++ + ++ K      L+++M+       + T   
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+N  C+   +  A+    +M   G EP++ T+ SL++G C+G     A+ +   M+   
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMG 181

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           + PN+V Y+T+++GLCK  ++  A+++L+RM++ G++PDA  Y  +IS  C+ G++ +A 
Sbjct: 182 YEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDAT 241

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             +  M    I P+  T+       N ++    K    + A ++Y  M  RS+  D +TY
Sbjct: 242 RMVSCMTKREIYPDVFTF-------NALIDACVKEGRISEAEELYEEMIRRSLDPDIVTY 294

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           S LI   C    + ++ ++   +V  GC PD  T+S ++      +K+    +L 
Sbjct: 295 SLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 144/278 (51%), Gaps = 9/278 (3%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L NG+ R  K+ ++ +LF  M      P++  ++ L++ + + K  +  + L+E+M+  G
Sbjct: 53  LRNGI-RYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLG 111

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           +  N+ T + L++  C+    S A+  L  M+   H P+IVT+ +LLNG C+  ++ +A+
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDAL 171

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            + DRM   G +P+  +Y  II   C   +   A + L+ M + GI P+ +T       +
Sbjct: 172 YMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVT-------Y 224

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N+++ GLC +   + A ++   M  R I  D  T+++LI    K+G I ++  + +E++ 
Sbjct: 225 NSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIR 284

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
               PD  T+S ++  L    ++ +A ++    +   C
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGC 322


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 201/395 (50%), Gaps = 21/395 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +T S++I  L    +   A  LL+ V +  C +      ++ +G    HR   A
Sbjct: 523 GIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKA 582

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE------IGIQPCVASL 158
            ++F KM++ GC P   +  T++  L +   +K+A   +++M        I  +P   S 
Sbjct: 583 TQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISY 642

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           +++I  LCK  G  D A ++F+EM   G  PD  +Y +LI+G CR GK  +AK LF EM 
Sbjct: 643 SIIIDGLCK-CGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMV 701

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P V T++ LI+ LC+   V EA  L E M  +G  PN  TY++L+ GLC     S
Sbjct: 702 DIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRIS 761

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ------GLKPDAG 332
           +A +L   M      P++VTY TL+ GLC+ G ++ A+E+  +M           KPD  
Sbjct: 762 EATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVI 821

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            Y  II   C  G+  EA     EM   G+ PN ++++       +++ G C++     A
Sbjct: 822 SYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYT-------SLIHGFCRSGKLEDA 874

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
             ++  M ++ + ++++TYS +I  FCK+G I K+
Sbjct: 875 KHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 909



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/478 (28%), Positives = 232/478 (48%), Gaps = 63/478 (13%)

Query: 39  TAEYA-NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97
           T++Y     R D +T S++I  L    +   A +LL+ + +  C +    + ++ +G   
Sbjct: 335 TSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCM 394

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE------IGI 151
            HR  +A  +F  M++ GC P   +Y T++  L +   + +A + ++ M        I  
Sbjct: 395 EHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKC 454

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING----------- 200
           +P + S +++I  LCK+    D A ++F EM  +G  PD  +Y TLI+G           
Sbjct: 455 KPTLISYSIIIDGLCKDRRE-DEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAK 513

Query: 201 ------------------------LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
                                   LC+ GK+ EA +L + +  + C   VVT T+L+ GL
Sbjct: 514 CLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGL 573

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH---- 292
           C    + +A +LF +M+  G  PNV T ++LM GLC+ G    A+EL + M+S       
Sbjct: 574 CMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGI 633

Query: 293 --RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN ++YS +++GLCK G+  EA E+   MK  G+ PD   Y  +I  FC  GK+++A
Sbjct: 634 NCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDA 693

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVD 406
               +EMV  G+ P+  T+S+ I +       LCK     + N   +V   M  R    +
Sbjct: 694 KYLFNEMVDIGVQPDVTTFSVLIDM-------LCKEGKVIEANELLEV---MIQRGCIPN 743

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           ++TY++L+   C    I ++ ++  ++   GCLPD  T+  +M  L     ++ A EL
Sbjct: 744 TVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALEL 801



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 227/435 (52%), Gaps = 27/435 (6%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR---VNKEKCDITEDIFLSICRGYGRVH 99
           A G   D  +++ +I     + ++  A+ L +    V  +    T  + + +    G+V 
Sbjct: 486 AQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKV- 544

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
             ++A ++ + + + GC     +  T++  L  ++++  A + +  M+++G  P V +  
Sbjct: 545 --IEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCA 602

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNR------GCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            L+K LC+ SG +  A ++ + M +        C P++ +Y  +I+GLC+ G+  EA+EL
Sbjct: 603 TLMKGLCQ-SGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEAREL 661

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           FKEM+     P V++YTSLI+G C+S   ++A  LF EM   GV+P+V T+S L+D LCK
Sbjct: 662 FKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCK 721

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A ELL++MI +   PN VTY+TL+ GLC   ++ EA ++  +M+  G  PD   
Sbjct: 722 EGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVT 781

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLG------GITPNRLTWSLHIRIHNTVVQGLCKTD 387
           YG ++   C  G  + A     +M+           P+ +++S+       ++ GLCK  
Sbjct: 782 YGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSI-------IIDGLCKHG 834

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A +++  M+   +  + ++Y+SLI  FC+ G +  +  + +E+V  G   +  T+S
Sbjct: 835 REDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYS 894

Query: 447 AVMTALWDRRKMRQA 461
            ++       ++ +A
Sbjct: 895 VMIHGFCKEGQIDKA 909



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/518 (26%), Positives = 231/518 (44%), Gaps = 96/518 (18%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
            R D +T S++I  L    +   A +LL+ + +  C +    + ++ +G    HR  +A 
Sbjct: 50  IRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEAT 109

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE------IGIQPCVASLN 159
            +F  M++ GC P   +Y T++  L +   + +A + ++ M        I  +P + S +
Sbjct: 110 WLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYS 169

Query: 160 VLIKALCKN----------------------------------SGTMDAAFKIFREMPNR 185
           ++I  LCK+                                  SG  + A  +F EM + 
Sbjct: 170 IIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDV 229

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD  T G LI+  C+ GK+ EA EL + M  + C   +VTY++LI GLC    + EA
Sbjct: 230 GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEA 289

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGG------------------------------ 275
            +LF  M+  G  P+   Y +LM GLC+ G                              
Sbjct: 290 TQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTT 349

Query: 276 --------CSS----QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
                   C      +A ELL++MI +    +IVTYSTL+ GLC E ++ EA  +   M+
Sbjct: 350 SSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQ 409

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG----GI--TPNRLTWSLHIRIHN 377
             G +PDA  YG ++   C  G    A     EM+      GI   P  +++S+      
Sbjct: 410 KLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSI------ 463

Query: 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++ GLCK    + A +++  M+ + I  D ++Y++LI  FC  G   K+  + +E++  
Sbjct: 464 -IIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDV 522

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           G  PD  T S ++  L  + K+ +A +LL + +   C+
Sbjct: 523 GIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCI 560



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 224/442 (50%), Gaps = 34/442 (7%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR---VNKEKCDITEDIFLSICRGYGRVH 99
           A G   D  +++ +I     + ++  A+ L +    V  +    T  + + +    G+V 
Sbjct: 193 AQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKV- 251

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
             ++A  + + M   GC     +Y T++  L  ++++  A + +  M+++G +P   +  
Sbjct: 252 --IEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYG 309

Query: 160 VLIKALCKNSGTMDAAFKIFREMPN-------RGCTPDSYTYGTLINGLCRLGKIYEAKE 212
            L+K LC+ +G ++ A  + +EM N       +   PD  T   LI+ LC+ GK+ EA E
Sbjct: 310 TLMKGLCQ-TGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANE 368

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           L + M  + C   +VTY++LI GLC    + EA  LF  M+  G  P+  TY +LM GLC
Sbjct: 369 LLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLC 428

Query: 273 KGGCSSQAMELLQMMISKRHR------PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           + G  + A++L Q M++   R      P +++YS +++GLCK+ +  EA E+ + MK QG
Sbjct: 429 QTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQG 488

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK- 385
           + PD   Y  +I  FC  GK+++A    +EM+  GI P+  T S+ I +       LCK 
Sbjct: 489 IMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDM-------LCKK 541

Query: 386 ---TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
               + N+  +V +    R   +D +T ++L+   C K  I K+ ++  ++   GC+P+ 
Sbjct: 542 GKVIEANKLLEVVI---QRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNV 598

Query: 443 GTWSAVMTALWDRRKMRQAAEL 464
            T + +M  L     ++ A EL
Sbjct: 599 VTCATLMKGLCQSGNIKIALEL 620



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/523 (26%), Positives = 238/523 (45%), Gaps = 96/523 (18%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +T  ++I       +   A +LL+ +    C +    + ++ +G    HR  +A
Sbjct: 230 GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEA 289

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM----REIGIQ---PCVAS 157
            ++F  MK+ GC P   +Y T++  L +  ++ +A   ++ M     + GI+   P V +
Sbjct: 290 TQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTT 349

Query: 158 LNVLIKALCKNSGTMDA----------------------------------AFKIFREMP 183
            ++LI  LCK    ++A                                  A  +F  M 
Sbjct: 350 SSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQ 409

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIY----------------------------------- 208
             GC PD+ TYGTL+ GLC+ G I                                    
Sbjct: 410 KLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLC 469

Query: 209 ------EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
                 EA+ELF+EM+ +   P V++YT+LI+G C S   E+A  LF EM   G++P+V 
Sbjct: 470 KDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVT 529

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T S L+D LCK G   +A +LL+++I +    ++VT +TL+ GLC + ++ +A ++  +M
Sbjct: 530 TSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKM 589

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEA----ANFLDEMVLGGIT--PNRLTWSLHIRIH 376
           +  G  P+      ++   C  G  + A     N L +    GI   PN +++S+     
Sbjct: 590 QKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSI----- 644

Query: 377 NTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             ++ GLCK    + A +++  M+   +  D ++Y+SLI  FC+ G    +  + +E+V 
Sbjct: 645 --IIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 702

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            G  PD  T+S ++  L    K+ +A ELL + +   C+   V
Sbjct: 703 IGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTV 745



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 223/468 (47%), Gaps = 48/468 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPA----EDLLDRVNKE--KCDITEDIFLSICRGYGRV 98
           G R D  T+  ++  L        A    +++L+   +   KC  T   +  I  G  + 
Sbjct: 412 GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 471

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
            R  +A  +F++MK  G  P   SY T++       + + A   +  M ++GIQP V + 
Sbjct: 472 RREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTS 531

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           +VLI  LCK    ++A  K+   +  RGC  D  T  TL+ GLC   +I +A +LF +M+
Sbjct: 532 SVLIDMLCKKGKVIEAN-KLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQ 590

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK------GVEPNVFTYSSLMDGLC 272
              C P VVT  +L+ GLCQS +++ A+ L + M S         +PN  +YS ++DGLC
Sbjct: 591 KLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLC 650

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G   +A EL + M +    P++++Y++L++G C+ GK ++A  + + M   G++PD  
Sbjct: 651 KCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVT 710

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------------------ 374
            +  +I   C  GK  EA   L+ M+  G  PN +T++  ++                  
Sbjct: 711 TFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKM 770

Query: 375 ----------IHNTVVQGLCKT-DPNRAFQVYLSMRNRS------ISVDSLTYSSLITCF 417
                      + T+++GLC+T +   A +++  M + +         D ++YS +I   
Sbjct: 771 QKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGL 830

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           CK G   ++  +  E+   G +P+  ++++++       K+  A  L 
Sbjct: 831 CKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLF 878



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 185/380 (48%), Gaps = 52/380 (13%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT--------- 196
           MR  G+ P   + N+LI  LC N   ++        +  RG  PD  TY           
Sbjct: 1   MRLAGLFPDSFTFNILINCLC-NVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSM 59

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           LI+ LC+ GK+ EA EL + M  + C   +VTY++LI GLC    + EA  LF  M+  G
Sbjct: 60  LIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLG 119

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR------PNIVTYSTLLNGLCKEG 310
             P+  TY +LM GLC+ G  + A++L Q M++   R      P +++YS +++GLCK+ 
Sbjct: 120 CRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDR 179

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +  EA E+   MK QG+ PD   Y  +I  FC  GK+++A    +EM+  GI P+  T  
Sbjct: 180 REDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSG 239

Query: 371 ----------------------------LHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
                                       L I  ++T+++GLC K   + A Q+++SM+  
Sbjct: 240 VLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKL 299

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG------CL-PDEGTWSAVMTALWD 454
               D++ Y +L+   C+ G I+ +  +  E++ D       C+ PD  T S ++  L  
Sbjct: 300 GCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCK 359

Query: 455 RRKMRQAAELLLLELMNKCV 474
             K+ +A ELL + +   C+
Sbjct: 360 EGKVIEANELLEVMIQRGCI 379



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 185/367 (50%), Gaps = 22/367 (5%)

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
           +   P   +   ++ IL +E ++  A      M + G    + + + LIK LC      +
Sbjct: 48  YSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISE 107

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA------CSPTVV 227
           A + +F  M   GC PD+ TYGTL+ GLC+ G I  A +L +EM          C PT++
Sbjct: 108 ATW-LFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLI 166

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +Y+ +I+GLC+ +  +EA  LF+EM+++G+ P+V +Y+SL+ G C  G   +A  L   M
Sbjct: 167 SYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEM 226

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           +    +P++ T   L++  CKEGK+ EA E+L+ M  +G   D   Y  +I   C   + 
Sbjct: 227 LDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRI 286

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN------ 400
            EA      M   G  P+ + +        T+++GLC+T   N A  ++  M N      
Sbjct: 287 SEATQLFMSMKKLGCRPDAIAYG-------TLMKGLCQTGKINIALHLHQEMLNDTSQYG 339

Query: 401 -RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            + I  D  T S LI   CK+G + ++  +++ ++  GC+ D  T+S ++  L    ++ 
Sbjct: 340 IKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRIS 399

Query: 460 QAAELLL 466
           +A  L +
Sbjct: 400 EATWLFM 406



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 154/288 (53%), Gaps = 11/288 (3%)

Query: 37  SATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRG 94
           S T+ Y    + +  ++S++I  L    +   A +L   +  +   +  D+  + S+  G
Sbjct: 626 SDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEM--KALGVIPDVISYTSLIHG 683

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           + R  +  DA  +F++M + G +P   ++  ++ +L +E ++  A      M + G  P 
Sbjct: 684 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPN 743

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             +   L+K LC N   +  A ++F +M   GC PD  TYGTL+ GLC+ G I  A EL 
Sbjct: 744 TVTYTTLVKGLCMND-RISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELH 802

Query: 215 KEMETKACS------PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           K+M +          P V++Y+ +I+GLC+    +EA  LF+EM++ GV PNV +Y+SL+
Sbjct: 803 KKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLI 862

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
            G C+ G    A  L   M+ +  + N VTYS +++G CKEG++ +A+
Sbjct: 863 HGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 910


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 235/438 (53%), Gaps = 16/438 (3%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V ++I    D N A  +F  A  +  + F H+  T + ++S  V A +   A        
Sbjct: 72  VGKVIHRIPDPNTAWEVFQWAGKQ--SKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSHM 129

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K   +  E  + ++  G+ +      A+ +F +MK+ G     +S+  VL  L    ++ 
Sbjct: 130 KNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIA-VLRSHNIVLRGLCSGGKIS 188

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A+  ++ M  I   P + S  ++I  LCK S  +D A  +F++M ++   PD  TYG L
Sbjct: 189 MAWEVFKDMSGI-FSPNLISYTIMIDGLCK-SRKVDKAITLFKQMVDKAIYPDVVTYGAL 246

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM-RSKG 256
           I+GL +  ++ EA +LF+E   K C PTVVTY ++I+GLC+   +E A+ L+++M R   
Sbjct: 247 IDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPH 306

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           ++P++FTYS+L++GL       +A EL + M+     P++VTY+TLL+GLCK G   +A+
Sbjct: 307 LKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAM 366

Query: 317 EILDRMKLQGL-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           EI  +M +  +  P+   Y  +I  FC + +  +A     EM    + P+ +T++     
Sbjct: 367 EIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFT----- 421

Query: 376 HNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             TV+Q LCK +  + A +++ S+  ++   DS+ +++++  +CK   I  + ++ D ++
Sbjct: 422 --TVIQKLCKESRIDEAHELFESI-GKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRML 478

Query: 435 LDGCLPDEGTWSAVMTAL 452
             GC P   T++A++T  
Sbjct: 479 DSGCAPTLATYTALVTGF 496



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 172/318 (54%), Gaps = 6/318 (1%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           ++++MI  L  + +   A  L  ++  +        + ++  G G+  R  +A  +F++ 
Sbjct: 207 SYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEA 266

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKAL-CKNS 169
           +  GC PT  +Y T++  L +  +++ A   Y  M RE  ++P + + + LI  L   N 
Sbjct: 267 RAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNR 326

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET-KACSPTVVT 228
           G  + A++++ EM + GC+PD  TY TL++GLC+ G   +A E+F++M     C P V+T
Sbjct: 327 G--EKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVIT 384

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT LI+  C+   + +A++L +EM  + + P+  T+++++  LCK     +A EL +  I
Sbjct: 385 YTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFES-I 443

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K  +P+ V ++T+L G CK  ++ +A ++ DRM   G  P    Y  +++ FC  G+Y 
Sbjct: 444 GKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYS 503

Query: 349 EAANFLDEMVLGGITPNR 366
           +A     EM+  G  P R
Sbjct: 504 DALIMYHEMIEMGFPPER 521



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 154/310 (49%), Gaps = 7/310 (2%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           + V+KA+ +F     +       D  T+  +I  L    + + A DL +    + C  T 
Sbjct: 219 RKVDKAITLFKQMVDK---AIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTV 275

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
             + ++  G  +  R  +A+ ++D M +E   +P   +Y  ++  L   N+ + A+  Y 
Sbjct: 276 VTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYE 335

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCR 203
            M + G  P V + N L+  LCK SG  D A +IFR+M     C P+  TY  LI+  C+
Sbjct: 336 EMLDTGCSPDVVTYNTLLDGLCK-SGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCK 394

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
           + ++ +A +L KEME ++  P  VT+T++I  LC+   ++EA  LFE +  K  +P+   
Sbjct: 395 VDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESI-GKTCKPDSVL 453

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +++++ G CK      A +L   M+     P + TY+ L+ G C+ G+  +A+ +   M 
Sbjct: 454 FNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMI 513

Query: 324 LQGLKPDAGL 333
             G  P+  L
Sbjct: 514 EMGFPPERHL 523


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 124/411 (30%), Positives = 204/411 (49%), Gaps = 12/411 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           ++++++  L  A +   A  L D +      +T  I +    GY  +    +A+++ D M
Sbjct: 264 SYNILLKVLCGAGRVEDARQLFDEMASPPDVVTYGILI---HGYCALGELENAVKLLDDM 320

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G EP    Y +V+A+L ++ ++  A      M    +    A    ++   C N G 
Sbjct: 321 VARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFC-NKGD 379

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           + +A + F EM  +G   D  TY TLINGLCR G++ EA+++ +EM  +      VTYT 
Sbjct: 380 LVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTV 439

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++G C+   + EA ++   M  +GV PNV TY++L DGLCK G    A ELL  M +K 
Sbjct: 440 LVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKG 499

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              N  TY++L+NGLCK G L +A+  +  M   GLKPD   Y  +I   C  G+   A 
Sbjct: 500 LELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAH 559

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTY 410
           + L EM+  GI P  +T+       N ++ G C +      +  L  M  ++I  ++ TY
Sbjct: 560 DLLQEMLDNGIKPTIVTY-------NVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTY 612

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +SL+  +C   ++  +  I   +      P+E T++ ++      R M++A
Sbjct: 613 NSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEA 663



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 196/396 (49%), Gaps = 9/396 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   + + ++ +++ L    +   A  +++ +   K  + E ++ ++  G+      +
Sbjct: 322 ARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLV 381

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A R FD+M+  G      +Y T++  L    +LK A +  + M    +     +  VL+
Sbjct: 382 SARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLV 441

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G M  AF++   M  RG  P+  TY  L +GLC+ G +  A EL  EM  K  
Sbjct: 442 DGYCKR-GKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGL 500

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
                TY SLINGLC++  +++AMR   +M + G++P+V+TY++L+D LCK G   +A +
Sbjct: 501 ELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHD 560

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LLQ M+    +P IVTY+ L+NG C  G+++   ++L+ M  + + P+A  Y  ++  +C
Sbjct: 561 LLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYC 620

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNR 401
                +        M    + PN  T+       N +++G CK    +  Q + + M  +
Sbjct: 621 IGNNMKSTTEIYKGMCSRNVEPNENTY-------NILIKGHCKARSMKEAQYFHNEMIEK 673

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
              + + +YS+LI    KK    ++ ++  ++  +G
Sbjct: 674 GFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEG 709



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 187/365 (51%), Gaps = 20/365 (5%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           L +  +  +++++G  P+P++   VL+ L     L  A   ++ + +      V S N+L
Sbjct: 217 LPSAPLLRRVRQYGISPSPEACNAVLSRL----PLDEAIELFQGLPDKN----VCSYNIL 268

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K LC  +G ++ A ++F EM      PD  TYG LI+G C LG++  A +L  +M  + 
Sbjct: 269 LKVLC-GAGRVEDARQLFDEM---ASPPDVVTYGILIHGYCALGELENAVKLLDDMVARG 324

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P    YTS++  LC    V +A+ + E+M    V  +   Y++++ G C  G    A 
Sbjct: 325 VEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSAR 384

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
                M  K    + VTY+TL+NGLC+ G+L+EA ++L  M  + L  D   Y  ++  +
Sbjct: 385 RWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGY 444

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C  GK  EA    + MV  G+ PN +T++        +  GLCK  D   A ++   M N
Sbjct: 445 CKRGKMAEAFQVHNTMVQRGVAPNVVTYT-------ALSDGLCKQGDVQAANELLHEMSN 497

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + + +++ TY+SLI   CK G + ++ R + ++   G  PD  T++ ++ AL    ++ +
Sbjct: 498 KGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDR 557

Query: 461 AAELL 465
           A +LL
Sbjct: 558 AHDLL 562



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 175/390 (44%), Gaps = 42/390 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I+ L  A + + AE +L  +   + D+ E  +  +  GY +       
Sbjct: 394 GLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKR------ 447

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
                KM E                         AF+ +  M + G+ P V +   L   
Sbjct: 448 ----GKMAE-------------------------AFQVHNTMVQRGVAPNVVTYTALSDG 478

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK  G + AA ++  EM N+G   ++ TY +LINGLC+ G + +A     +M+     P
Sbjct: 479 LCKQ-GDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKP 537

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TYT+LI+ LC+S  ++ A  L +EM   G++P + TY+ LM+G C  G      +LL
Sbjct: 538 DVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLL 597

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+ K   PN  TY++L+   C    ++   EI   M  + ++P+   Y  +I   C  
Sbjct: 598 EWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKA 657

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
              +EA  F +EM+  G      ++S  IR+ N       K     A +++  MR    +
Sbjct: 658 RSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNK------KKKFVEARKLFHDMRKEGFT 711

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            +   Y+  I     + ++  +  + DELV
Sbjct: 712 AEPDVYNFYIDFNFNEDNLEATLALCDELV 741



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 5/227 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T++ +I  L  + +   A DLL  +       T   +  +  G+    R  
Sbjct: 532 AAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVE 591

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
              ++ + M E    P   +Y +++      N +K     Y+ M    ++P   + N+LI
Sbjct: 592 GGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILI 651

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K  CK + +M  A     EM  +G    + +Y  LI  L +  K  EA++LF +M  +  
Sbjct: 652 KGHCK-ARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGF 710

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           +     Y   I+      ++E  + L +E+    VE ++    + MD
Sbjct: 711 TAEPDVYNFYIDFNFNEDNLEATLALCDEL----VEASIVKSKAEMD 753


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 186/354 (52%), Gaps = 11/354 (3%)

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L E  +L  A R    MR   + P V + N LI+ LCK S   +A     R M N+GC P
Sbjct: 234 LCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEA-MHYLRRMMNQGCLP 291

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D +TY T+I+G C++  + EA EL K+   K   P  VTY SLINGLC    VE A+ LF
Sbjct: 292 DDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELF 351

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            E ++KG++P++  Y+SL+ GLC  G    A++++  M  +   P+I TY+ ++NGLCK 
Sbjct: 352 NEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKM 411

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G + +A  +++   ++G  PD   +  +I  +C   K   A   ++ M   GI P+ +T+
Sbjct: 412 GNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITY 471

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N+V+ GLCK    N   + +  M  +    + +TY+ LI  FC+   + ++++
Sbjct: 472 -------NSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 524

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           ++ ++  +G  PD  +++ ++     R    + A LL  +L  K   A  D  N
Sbjct: 525 VIVKMSQEGLHPDAVSFNTLIYGFC-RNGDLEGAYLLFQKLEEKGYSATADTFN 577



 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 193/367 (52%), Gaps = 14/367 (3%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++++  R Y R  R  DA+  F++M  F C P   +Y  ++  LV+      A + Y  M
Sbjct: 55  LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRM 114

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G+ P + +  + +++ C  +     A ++ R +P+RG    +  Y T++ GL   G 
Sbjct: 115 LAAGVSPDLHTHTIRLRSFCL-TARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGH 169

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
            ++A++LF +M      P +  +  +++ LC+   V EA  L  ++  +G+  N+FTY+ 
Sbjct: 170 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 229

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            + GLC+ G   +A+ L+  M +    P++VTY+TL+ GLCK+   QEA+  L RM  QG
Sbjct: 230 WIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 288

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-K 385
             PD   Y  II  +C I   QEA   L + V  G  P+++T+        +++ GLC +
Sbjct: 289 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYC-------SLINGLCAE 341

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            D  RA +++   + + I  D + Y+SL+   C +G I  + ++++E+  +GC PD  T+
Sbjct: 342 GDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTY 401

Query: 446 SAVMTAL 452
           + V+  L
Sbjct: 402 NIVINGL 408



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 214/438 (48%), Gaps = 10/438 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I  L   +  + A   L R+  + C   +  + +I  GY ++    +A  + 
Sbjct: 257 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 316

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
                 G  P   +Y +++  L  E  ++ A   +   +  GI+P +   N L+K LC  
Sbjct: 317 KDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL- 375

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A ++  EM   GC PD  TY  +INGLC++G I +A  +  +   K   P V T
Sbjct: 376 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 435

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           + +LI+G C+   ++ A++L E M   G+ P+  TY+S+++GLCK G  ++  E  Q MI
Sbjct: 436 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 495

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K   PN +TY+ L+   C+  K++EA +++ +M  +GL PDA  +  +I  FC  G  +
Sbjct: 496 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 555

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDS 407
            A     ++   G +    T+       NT++     K + + A +++  M ++    DS
Sbjct: 556 GAYLLFQKLEEKGYSATADTF-------NTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS 608

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            TY  LI   CK  ++ ++   + E++  G +P   T+  V+ +L    ++ QA  ++ +
Sbjct: 609 YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHI 668

Query: 468 ELMNKCVEAEVD-IQNQD 484
            +    V   VD I N D
Sbjct: 669 MVKIGVVPEVVDTILNAD 686



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 166/351 (47%), Gaps = 14/351 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRGYGRVHRPL 102
           GF  D  T+  +I+ L +      A +L +    +  K DI   ++ S+ +G       L
Sbjct: 323 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV--VYNSLVKGLCLQGLIL 380

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A++V ++M E GC P  ++Y  V+  L +   +  A          G  P V + N LI
Sbjct: 381 HALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLI 440

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK    +D+A ++   M   G  PD+ TY +++NGLC+ GK+ E  E F+EM  K C
Sbjct: 441 DGYCKRL-KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 499

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +TY  LI   C+S  +EEA ++  +M  +G+ P+  ++++L+ G C+ G    A  
Sbjct: 500 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYL 559

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L Q +  K +     T++TL+     +  +  A +I D M  +G + D+  Y  +I   C
Sbjct: 560 LFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSC 619

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ 393
                  A   L EM+  G  P+  T+    R+ N++      T  +R FQ
Sbjct: 620 KTANVDRAYMHLVEMIKKGFIPSMSTFG---RVINSL------TVNHRVFQ 661


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 143/531 (26%), Positives = 241/531 (45%), Gaps = 84/531 (15%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T   +L  +  E  +++AL +F           + +  TF+ +++ L    +   A 
Sbjct: 150 TVVTFNTLLHGLCVEDRISEALDLFHQMC-------KPNVVTFTTLMNGLCREGRVVEAV 202

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG-CEPTPKSYITVLAI 129
            LLDR+ ++     +  + +I  G  ++   + A+ +  KM+E     P    Y T++  
Sbjct: 203 ALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDG 262

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L ++ +   A   +  M+E  I P + + N +I   C  SG    A ++ +EM  R   P
Sbjct: 263 LWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCI-SGRWSDAEQLLQEMLERKINP 321

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEM-------------------------------- 217
           D  T+  LIN   + GK +EA+EL+ EM                                
Sbjct: 322 DVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMF 381

Query: 218 ---ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
               TK CSP ++T+ +LI G C++K V++ ++L  EM   G+  N  TY++L+ G C+ 
Sbjct: 382 YLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 441

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK----------- 323
           G  + A +LLQ MIS    PN+VT +TLL+GLC  GKL++A+E+   M+           
Sbjct: 442 GDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRP 501

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--------- 374
             G++PD   Y  +I    + GK+ EA    +EM   GI P+ +T+S  I          
Sbjct: 502 FNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 561

Query: 375 -------------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLI 414
                                NT++ G CK    +   +++  M  R I  D++TY +LI
Sbjct: 562 EATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLI 621

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             F K  +I  +  I  E++  G  PD  T   ++T LW + ++ +A  +L
Sbjct: 622 YGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAML 672



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 213/434 (49%), Gaps = 25/434 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF     TF+ ++  L   ++   A DL  ++    C      F ++  G  R  R ++A
Sbjct: 146 GFHPTVVTFNTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEA 201

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
           + + D+M E G +P   +Y T++  + +      A    R M E+  I P V   N +I 
Sbjct: 202 VALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIID 261

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K+ G    A  +F EM  +   PD  TY  +ING C  G+  +A++L +EM  +  +
Sbjct: 262 GLWKD-GRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKIN 320

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVT+++LIN   +     EA  L++EM  + + P+  TYSS++DG CK      A  +
Sbjct: 321 PDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHM 380

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +  +K   P+I+T++TL+ G C+  ++ + +++L  M   GL  +   Y  +I  FC 
Sbjct: 381 FYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQ 440

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
           +G    A + L EM+  G+ PN +T        NT++ GLC     + A +++ +M+   
Sbjct: 441 VGDLNAAQDLLQEMISSGVCPNVVTC-------NTLLDGLCDNGKLKDALEMFKAMQKSK 493

Query: 403 ISVDS-----------LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           + +D+            TY+ LI     +G   ++  + +E+   G +PD  T+S+++  
Sbjct: 494 MDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 553

Query: 452 LWDRRKMRQAAELL 465
           L  + ++ +A ++ 
Sbjct: 554 LCKQSRLDEATQMF 567



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 197/379 (51%), Gaps = 14/379 (3%)

Query: 89  LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
           L +  G+  +    DA+ +F  M      P+   +  ++ ++V   +  +    ++ M E
Sbjct: 50  LKLQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKM-E 108

Query: 149 IGIQPCVA-SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           +   PC A S  +L+K  C  S  +  A   F ++   G  P   T+ TL++GLC   +I
Sbjct: 109 MLRMPCNAYSFTILMKCFCSCS-KLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRI 167

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA +LF +M    C P VVT+T+L+NGLC+   V EA+ L + M   G++PN  TY ++
Sbjct: 168 SEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTI 223

Query: 268 MDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           +DG+CK G +  A+ LL+ M    H  PN+V Y+T+++GL K+G+  +A  +   M+ + 
Sbjct: 224 VDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKE 283

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           + PD   Y  +I+ FC  G++ +A   L EM+   I P+ +T+S  I   N  V+   + 
Sbjct: 284 IFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALI---NAFVK---EG 337

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
               A ++Y  M  RSI   ++TYSS+I  FCK+  +  +  +       GC PD  T++
Sbjct: 338 KFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFN 397

Query: 447 AVMTALWDRRKMRQAAELL 465
            ++      +++    +LL
Sbjct: 398 TLIAGYCRAKRVDDGIKLL 416



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 156/306 (50%), Gaps = 13/306 (4%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G  D    + ++M       ++Y++  L+   C   K+  A   F ++      PTVVT+
Sbjct: 95  GRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTF 154

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            +L++GLC    + EA+ LF +M     +PNV T+++LM+GLC+ G   +A+ LL  M+ 
Sbjct: 155 NTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLE 210

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLYGKIISCFCDIGKYQ 348
              +PN +TY T+++G+CK G    A+ +L +M ++  + P+  +Y  II      G++ 
Sbjct: 211 DGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHS 270

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           +A N   EM    I P+ +T+       N ++ G C +   + A Q+   M  R I+ D 
Sbjct: 271 DAHNLFIEMQEKEIFPDIVTY-------NCMINGFCISGRWSDAEQLLQEMLERKINPDV 323

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +T+S+LI  F K+G   ++  + DE++    +P   T+S+++     + ++  A  +  L
Sbjct: 324 VTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYL 383

Query: 468 ELMNKC 473
                C
Sbjct: 384 TPTKGC 389



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 144/318 (45%), Gaps = 45/318 (14%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S MI      N+   AE +      + C      F ++  GY R  R  D +++  +M
Sbjct: 360 TYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEM 419

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E G      +Y T++    +   L  A    + M   G+ P V + N L+  LC N   
Sbjct: 420 TEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKL 479

Query: 172 MDA---------------------------------------------AFKIFREMPNRG 186
            DA                                             A +++ EMP+RG
Sbjct: 480 KDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRG 539

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             PD+ TY ++I+GLC+  ++ EA ++F  M +K+ SP VVT+ +LI G C++  V++ +
Sbjct: 540 IVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGL 599

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            LF EM  +G+  +  TY +L+ G  K      A+++ Q MIS    P+ +T   +L GL
Sbjct: 600 ELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGL 659

Query: 307 CKEGKLQEAVEILDRMKL 324
             + +L+ AV +L+ +++
Sbjct: 660 WSKEELERAVAMLEDLQM 677



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 36/210 (17%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++++I  L++  +F  AE+L                               
Sbjct: 503 NGVEPDVQTYNILICGLINEGKFLEAEEL------------------------------- 531

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
               +++M   G  P   +Y +++  L ++++L  A + +  M      P V + N LI 
Sbjct: 532 ----YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLIT 587

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK +G +D   ++F EM  RG   D+ TY TLI G  ++  I  A ++F+EM +    
Sbjct: 588 GYCK-AGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVY 646

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           P  +T  +++ GL   + +E A+ + E+++
Sbjct: 647 PDTITIRNMLTGLWSKEELERAVAMLEDLQ 676


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 204/438 (46%), Gaps = 40/438 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHR 100
           +G+R D  TF+ +I       Q   A+DL D++           + ++  G+   GRV  
Sbjct: 158 SGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDE 217

Query: 101 PLDAMR----------------------------VFDKMKEFGCEPTPKSYITVLAILVE 132
            L+  R                            +  KMKE G  P  ++Y  ++ +   
Sbjct: 218 ALELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCR 277

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           E + + A +    M + G+ PC  +   ++ A C+  G M  A ++F  M  +GC P+ +
Sbjct: 278 EQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCRE-GRMSGAVRVFESMKLKGCEPNVW 336

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY  ++ G C +GK+Y+A  L  +M      P VVTY  LI G C    +E A RL   M
Sbjct: 337 TYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLM 396

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
              G+  + +TY+ L+D LCK G   +A  L   +  +  RPN VT++T++NGLCK GK 
Sbjct: 397 EGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKF 456

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
             A   L++M   G  PD   Y   I   C     +E  +F+DEM+   + P+ + +++ 
Sbjct: 457 DVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIV 516

Query: 373 I-RIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           I R+      GL       A +++  M +   S D +TY++ +  +C +G +H++  +V 
Sbjct: 517 IDRLFKERNYGL-------ATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVM 569

Query: 432 ELVLDGCLPDEGTWSAVM 449
           E+   G + D   ++ ++
Sbjct: 570 EMKKGGIIVDAMAYNTLI 587



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 193/391 (49%), Gaps = 35/391 (8%)

Query: 105 MRVFDKMKEFGCE-PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +R+F  M   G   PT  +Y  ++  L     L+ A R+   M   G +P   + N LI 
Sbjct: 113 LRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLIL 172

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+    +D A  +F +MP RG + D+ +Y  LI G C  G++ EA ELF+E+E     
Sbjct: 173 GYCRTQ-QLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELE----Q 227

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P + T+ +L+ GLC ++  EE + + ++M+  G  P    Y++L+D  C+   + +A ++
Sbjct: 228 PDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKM 287

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M      P  VT + ++N  C+EG++  AV + + MKL+G +P+   Y  ++  FC+
Sbjct: 288 LNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCN 347

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIR----------------------------I 375
           +GK  +A   LD+M   G+ P+ +T++L IR                             
Sbjct: 348 VGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYT 407

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +N ++  LCKT   + A  ++  +  R I  +S+T++++I   CK G    +   ++++V
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMV 467

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             GC PD  T+S  +  L   +  R+    +
Sbjct: 468 SAGCAPDTYTYSPFIENLCKTKGSREGLSFI 498



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 168/338 (49%), Gaps = 7/338 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE---KCDITEDIFLSICRGYGRVHRP 101
           G+R     ++ ++       +   AE +L+ +       C +T     ++   Y R  R 
Sbjct: 260 GWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVT---CTAVVNAYCREGRM 316

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A+RVF+ MK  GCEP   +Y  ++       ++  A      MRE G++P V + N+L
Sbjct: 317 SGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLL 376

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I+  C + G +++AF++ R M   G   D YTY  LI+ LC+ GK+ EA  LF  +E + 
Sbjct: 377 IRGQCID-GHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRG 435

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P  VT+ ++INGLC+    + A    E+M S G  P+ +TYS  ++ LCK   S + +
Sbjct: 436 IRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGL 495

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
             +  M+ K  +P+ V Y+ +++ L KE     A  I  +M   G  PD   Y   +  +
Sbjct: 496 SFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAY 555

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           C+ G+  EA N + EM  GGI  + + ++  I  H ++
Sbjct: 556 CNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSI 593



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 145/289 (50%), Gaps = 1/289 (0%)

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           C+     + ++ +G+  V +   AM + D+M+E G EP   +Y  ++     +  ++ AF
Sbjct: 331 CEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAF 390

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           R  R M   G+     + NVLI ALCK +G +D A  +F  +  RG  P+S T+ T+ING
Sbjct: 391 RLLRLMEGNGLAADQYTYNVLIDALCK-TGKVDEACSLFDGLEYRGIRPNSVTFNTVING 449

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC+ GK   A    ++M +  C+P   TY+  I  LC++K   E +   +EM  K V+P+
Sbjct: 450 LCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPS 509

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
              Y+ ++D L K      A  +   M+S    P++VTY+T +   C EG+L EA  ++ 
Sbjct: 510 TVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVM 569

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
            MK  G+  DA  Y  +I     IGK   A   L  M      PN  T+
Sbjct: 570 EMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTF 618



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 136/293 (46%), Gaps = 16/293 (5%)

Query: 193 TYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           T+ +L+    R         LF  M      +PT  TY +LI  LC+   +  A R    
Sbjct: 95  TFRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSL 154

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M   G  P+ FT++SL+ G C+      A +L   M  +    + V+Y+ L+ G C+ G+
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGR 214

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           + EA+E+   ++    +PD   +  ++   CD  + +E    L +M         L W  
Sbjct: 215 VDEALELFRELE----QPDMYTHAALVKGLCDARRGEEGLYMLQKM-------KELGWRP 263

Query: 372 HIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
             R +  +V   C+       +  L+ M +  +   ++T ++++  +C++G +  + R+ 
Sbjct: 264 ATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVF 323

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC-VEAEVDIQN 482
           + + L GC P+  T++A++    +  K+ +A  + LL+ M +C VE +V   N
Sbjct: 324 ESMKLKGCEPNVWTYNAMVQGFCNVGKVYKA--MALLDQMRECGVEPDVVTYN 374



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 138/362 (38%), Gaps = 55/362 (15%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V++A  +FD    EY  G R ++ TF+ +I+ L    +F  A   L+++    C      
Sbjct: 421 VDEACSLFDGL--EY-RGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYT 477

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +        +     + +   D+M +   +P+  +Y  V+  L +E    LA R +  M 
Sbjct: 478 YSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMV 537

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +G  P V +    ++A C N G +  A  +  EM   G   D+  Y TLI+G   +GK 
Sbjct: 538 SLGCSPDVVTYTTSVRAYC-NEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKT 596

Query: 208 YEAKELFKEMETKACSPTVVT--------------------------------------- 228
             A  + K M   A  P   T                                       
Sbjct: 597 DHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFEL 656

Query: 229 ------------YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
                       Y +++ G  + + ++E   L   M+   +  N   Y+SL++  CK   
Sbjct: 657 MKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRM 716

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
              A  LL  MI     PN+++Y  LL+G   EG+   A EI   ++ +    D  ++  
Sbjct: 717 YPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKI 776

Query: 337 II 338
           II
Sbjct: 777 II 778



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 123/334 (36%), Gaps = 57/334 (17%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDR-VNKEKCDITEDIFLSICRGYGRVHRPLD 103
           G   D  T+S  I  L      R     +D  + K+    T +  + I R +   +  L 
Sbjct: 470 GCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGL- 528

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A R++ +M   GC P   +Y T +     E +L  A      M++ GI     + N LI 
Sbjct: 529 ATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLID 588

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTY-------------------GTLINGLCRL 204
               + G  D A  I + M      P+ +T+                    T +     L
Sbjct: 589 GH-TSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIEL 647

Query: 205 GKIYEAKELFKEMETKACSPTVVT--------------------------------YTSL 232
             ++E  EL K+    + +   +                                 YTSL
Sbjct: 648 ADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSL 707

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           +N  C+ +   +A  L   M   G  PN+ +Y  L+ G    G + +A E+ + +  K +
Sbjct: 708 VNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEY 767

Query: 293 RPNIVTYSTLLNGLCKEGK---LQEAVEILDRMK 323
             + + +  +++GL ++G      + + IL++MK
Sbjct: 768 NTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMK 801


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 125/409 (30%), Positives = 207/409 (50%), Gaps = 14/409 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPL 102
           G   D S  +  I  LV  N+   A   L+R+  +  +I  ++    C  +GY  +HR  
Sbjct: 199 GIEPDLSICNTAIHVLVMGNRLDKAVRFLERM--QIVEIXPNVITYNCLIKGYCDLHRLE 256

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK-LAFRFYRHMREIGIQPCVASLNVL 161
           DA  +  +M   GC P   SY TV+  L +E ++K L     + +++  + P   + N  
Sbjct: 257 DAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTF 316

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  L K+ G  D A +  RE   R    D   Y  +++  CR G++ +AKE+  EM +K 
Sbjct: 317 VHMLSKH-GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKG 375

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P VVTYTS+INGLCQ + V++A ++  +M   G +PN  +Y++L++GLCK G S +A 
Sbjct: 376 CIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAR 435

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           E++ M       PN +TYS L++G  +EGK  EA +++  M  +G  P       +I   
Sbjct: 436 EMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSL 495

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRN 400
           C   K  EA  F+++ +  G   N + ++       TV+ G C K D   A  +   M  
Sbjct: 496 CQEEKVDEAKRFMEQCLNNGCAVNVVNFT-------TVIHGFCQKDDLEAALSLLDDMYL 548

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            +   D +TY+++I    KKG I ++ ++  +++  G +P   T+  V+
Sbjct: 549 SNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVI 597



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 233/487 (47%), Gaps = 47/487 (9%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           QV  +++ + D   AL  F  A  ++   +RHD   +  M+  L      + A+ +L  +
Sbjct: 103 QVCAVLQLQTDERVALRFFYWADRQWR--YRHDPIVYYAMLEILSKTKLCQGAKRVLRLM 160

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
            K + +   + F  +   Y R  +  +AMR    M++ G EP      T + +LV  N+L
Sbjct: 161 AKRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRL 220

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
             A RF   M+ + I P V + N LIK  C +   ++ A ++  EMP +GC+PD  +Y T
Sbjct: 221 DKAVRFLERMQIVEIXPNVITYNCLIKGYC-DLHRLEDAXELIAEMPFKGCSPDKISYYT 279

Query: 197 LINGLCRLGKIY------------------------------------EAKELFKEMETK 220
           ++  LC+  +I                                     EA E  +E E +
Sbjct: 280 VMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEER 339

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                 V Y+++++  C+   +++A  +  EM SKG  P+V TY+S+++GLC+     QA
Sbjct: 340 RFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQA 399

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ++L+ M     +PN V+Y+ LLNGLCK G   EA E+++  +     P+A  Y  ++  
Sbjct: 400 KKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHG 459

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           F   GK  EA + + EM+  G  P  +         N ++Q LC+ +  + A +      
Sbjct: 460 FRREGKSSEACDLVREMIKKGFFPTPVEI-------NLLIQSLCQEEKVDEAKRFMEQCL 512

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N   +V+ + ++++I  FC+K D+  +  ++D++ L    PD  T++ ++ AL  + ++ 
Sbjct: 513 NNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIE 572

Query: 460 QAAELLL 466
           +A +L +
Sbjct: 573 EATKLAM 579



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 202/426 (47%), Gaps = 32/426 (7%)

Query: 51  STFSLMISKLVSANQ----FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           +TF  M+SK    ++     R AE+   RV+K         + +I   + R  R   A  
Sbjct: 314 NTFVHMLSKHGHGDEALEFLREAEERRFRVDKVG-------YSAIVHSFCREGRMDKAKE 366

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           + ++M   GC P   +Y +V+  L +E ++  A +  R M + G +P   S   L+  LC
Sbjct: 367 IVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLC 426

Query: 167 KNSGTMDAAFKIFREMPNRG----CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           KN  +++A     REM N        P++ TY  L++G  R GK  EA +L +EM  K  
Sbjct: 427 KNGNSLEA-----REMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGF 481

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT V    LI  LCQ + V+EA R  E+  + G   NV  +++++ G C+      A+ 
Sbjct: 482 FPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALS 541

Query: 283 LLQ-MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           LL  M +S +H P++VTY+T+++ L K+G+++EA ++  +M   G  P    Y  +I  +
Sbjct: 542 LLDDMYLSNKH-PDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQY 600

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRN 400
           C +G+ ++    L++M         L+       +N V++ LC   +  +A+++   +  
Sbjct: 601 CRMGRVEDLLKLLEKM---------LSRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLR 651

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
            +  +D+ T   LI  +  KG    S  +   +     +PD      V   L    K  +
Sbjct: 652 TASKIDANTCHMLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEE 711

Query: 461 AAELLL 466
           A +L+L
Sbjct: 712 ADKLIL 717



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 161/355 (45%), Gaps = 9/355 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+  +  E+ V++A  +       Y +G + +  +++ +++ L        A ++
Sbjct: 381 VTYTSVINGLCQERKVDQAKKMLRQM---YKHGCKPNTVSYTALLNGLCKNGNSLEAREM 437

Query: 73  LDRVNKEKCDITEDIFLSIC-RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           ++ +++E   I   I  S+   G+ R  +  +A  +  +M + G  PTP     ++  L 
Sbjct: 438 MN-MSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLC 496

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +E ++  A RF       G    V +   +I   C+    ++AA  +  +M      PD 
Sbjct: 497 QEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKD-DLEAALSLLDDMYLSNKHPDV 555

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY T+I+ L + G+I EA +L  +M      PT VTY ++I+  C+   VE+ ++L E+
Sbjct: 556 VTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEK 615

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M S+  +     Y+ +++ LC  G   QA +LL  ++    + +  T   L+     +G 
Sbjct: 616 MLSR--QECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGI 673

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV-LGGITPN 365
              +  +  RM  + L PD  L  K+       GK +EA   +   V  G I+P 
Sbjct: 674 PLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEADKLILRFVERGRISPQ 728


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 184/336 (54%), Gaps = 16/336 (4%)

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
           + FY  + + G  P V   N+L+   CK    M+A   +F E+  RG  P   ++ TLI+
Sbjct: 211 WEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARM-VFDEISRRGLRPSVVSFNTLIS 269

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           G CR   + E   L   ME++  SP V TY++LINGLC+   VEEA  LF+EM   G+ P
Sbjct: 270 GYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVP 329

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           N  T+++L+DG CK G    A+   ++M  +  RP+++TY+ L+NGLC++G L+EA ++L
Sbjct: 330 NGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLL 389

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           + M   G KPD   +  ++   C  G    A    D MV  GI  + + ++        +
Sbjct: 390 NEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFT-------AL 442

Query: 380 VQGLCKT----DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           + GLC+     D  R  +  LS  ++    D  TY+ +I CFCKKGD+   A+++ E+  
Sbjct: 443 ISGLCRDGRVRDAERMLKDMLSAGHKP---DDPTYTMVIDCFCKKGDVKMGAKLLKEMQR 499

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           DG +P   T++A+M     + +M+  A++LL  ++N
Sbjct: 500 DGRVPGVVTYNALMNGFCKQGQMKN-AKMLLHAMLN 534



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 176/312 (56%), Gaps = 8/312 (2%)

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           V   + L++ + K +      ++ + E+ + G  P+ Y +  L++G C++G +  A+ +F
Sbjct: 190 VCGCDYLLRRVMKLNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVF 249

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            E+  +   P+VV++ +LI+G C+SK+VEE   L   M S+ + P+VFTYS+L++GLCK 
Sbjct: 250 DEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKE 309

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
               +A  L   M      PN VT++TL++G CK GK+  A+   + MK +G++PD   Y
Sbjct: 310 SRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITY 369

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393
             +I+  C  G  +EA   L+EM+  G  P+++T++       T++ G CK  D + A +
Sbjct: 370 NALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFT-------TLMDGCCKDGDMDSALE 422

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +   M    I +D + +++LI+  C+ G +  + R++ +++  G  PD+ T++ V+    
Sbjct: 423 IKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFC 482

Query: 454 DRRKMRQAAELL 465
            +  ++  A+LL
Sbjct: 483 KKGDVKMGAKLL 494



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 184/371 (49%), Gaps = 10/371 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  +   F++++           A  + D +++     +   F ++  GY R     + 
Sbjct: 221 GYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEG 280

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +   M+     P   +Y  ++  L +E++++ A   +  M E+G+ P   +   LI  
Sbjct: 281 FVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDG 340

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK+ G +D A + F  M +RG  PD  TY  LINGLCR G + EA++L  EM      P
Sbjct: 341 QCKH-GKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKP 399

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +T+T+L++G C+   ++ A+ + + M  +G+E +   +++L+ GLC+ G    A  +L
Sbjct: 400 DKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERML 459

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+S  H+P+  TY+ +++  CK+G ++   ++L  M+  G  P    Y  +++ FC  
Sbjct: 460 KDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQ 519

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
           G+ + A   L  M+   + PN +T+       N ++ G CK   +  F+++     + + 
Sbjct: 520 GQMKNAKMLLHAMLNMEVVPNDITF-------NILLDGHCKHGSSVDFKIFNG--EKGLV 570

Query: 405 VDSLTYSSLIT 415
            D  +Y++L+ 
Sbjct: 571 SDYASYTALVN 581



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 4/192 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            NGF+ D  TF+ ++           A ++ DR+ +E  ++ +  F ++  G  R  R  
Sbjct: 394 GNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVR 453

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA R+   M   G +P   +Y  V+    ++  +K+  +  + M+  G  P V + N L+
Sbjct: 454 DAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALM 513

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G M  A  +   M N    P+  T+  L++G C+ G   + K    E   K  
Sbjct: 514 NGFCK-QGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSSVDFKIFNGE---KGL 569

Query: 223 SPTVVTYTSLIN 234
                +YT+L+N
Sbjct: 570 VSDYASYTALVN 581


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 221/423 (52%), Gaps = 21/423 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SIC-RGYGRVHRPLD 103
           D   ++ +I+     N+   A  +LDR+  +      +T +I + S+C RG       LD
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG------KLD 210

Query: 104 -AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A++V +++    C+PT  +Y  ++   + E  +  A +    M   G++P + + N +I
Sbjct: 211 LALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTII 270

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           + +CK  G +D AF++ R +  +G  PD  +Y  L+  L   GK  E ++L  +M ++ C
Sbjct: 271 RGMCK-EGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY+ LI  LC+   +EEAM L + M+ KG+ P+ ++Y  L+   C+ G    A+E
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L+ MIS    P+IV Y+T+L  LCK GK  +A+EI  ++   G  P++  Y  + S   
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G    A + + EM+  GI P+ +T+       N+++  LC+    + AF++ + MR+ 
Sbjct: 450 SSGDKIRALHMILEMMSNGIDPDEITY-------NSMISCLCREGMVDEAFELLVDMRSC 502

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
                 +TY+ ++  FCK   I  +  +++ +V +GC P+E T++ ++  +       +A
Sbjct: 503 EFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEA 562

Query: 462 AEL 464
            EL
Sbjct: 563 MEL 565



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 197/396 (49%), Gaps = 11/396 (2%)

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+F   ++  G+ +++R  DA RV D+M+     P   +Y  ++  L    +L LA +  
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVL 216

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             +     QP V +  +LI+A     G +D A K+  EM +RG  PD +TY T+I G+C+
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGG-VDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G +  A E+ + +E K   P V++Y  L+  L      EE  +L  +M S+  +PNV T
Sbjct: 276 EGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           YS L+  LC+ G   +AM LL++M  K   P+  +Y  L+   C+EG+L  A+E L+ M 
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G  PD   Y  +++  C  GK  +A     ++   G +PN  ++       NT+   L
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSY-------NTMFSAL 448

Query: 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
             + D  RA  + L M +  I  D +TY+S+I+C C++G + ++  ++ ++      P  
Sbjct: 449 WSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSV 508

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            T++ V+       ++  A  +L   + N C   E 
Sbjct: 509 VTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNET 544



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 202/377 (53%), Gaps = 10/377 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + +G+  +     A+RV + +++FG +P   +Y  ++    + N++  A R    MR   
Sbjct: 130 LIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD 188

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
             P   + N++I +LC + G +D A K+  ++ +  C P   TY  LI      G + EA
Sbjct: 189 FSPDTVTYNIMIGSLC-SRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEA 247

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            +L  EM ++   P + TY ++I G+C+   V+ A  +   +  KG EP+V +Y+ L+  
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRA 307

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           L   G   +  +L+  M S++  PN+VTYS L+  LC++GK++EA+ +L  MK +GL PD
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 367

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
           A  Y  +I+ FC  G+   A  FL+ M+  G  P+ + +       NTV+  LCK    +
Sbjct: 368 AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY-------NTVLATLCKNGKAD 420

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A +++  +     S +S +Y+++ +     GD  ++  ++ E++ +G  PDE T+++++
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMI 480

Query: 450 TALWDRRKMRQAAELLL 466
           + L     + +A ELL+
Sbjct: 481 SCLCREGMVDEAFELLV 497



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 170/351 (48%), Gaps = 10/351 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T IT   +++    E  V++AL + D   +    G + D  T++ +I  +        A 
Sbjct: 227 TVITYTILIEATMLEGGVDEALKLMDEMLSR---GLKPDMFTYNTIIRGMCKEGMVDRAF 283

Query: 71  DL---LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           ++   L+    E   I+ +I L      G+     +  ++  KM    C+P   +Y  ++
Sbjct: 284 EMVRNLELKGSEPDVISYNILLRALLNQGKWE---EGEKLMTKMFSEKCDPNVVTYSILI 340

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
             L  + +++ A    + M+E G+ P   S + LI A C+  G +D A +    M + GC
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR-EGRLDVAIEFLETMISDGC 399

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            PD   Y T++  LC+ GK  +A E+F ++    CSP   +Y ++ + L  S     A+ 
Sbjct: 400 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 459

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +  EM S G++P+  TY+S++  LC+ G   +A ELL  M S    P++VTY+ +L G C
Sbjct: 460 MILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFC 519

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           K  ++++A+ +L+ M   G +P+   Y  +I      G   EA    +++V
Sbjct: 520 KAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 152/326 (46%), Gaps = 30/326 (9%)

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG    +  +   M  +G  PD      LI G   L  I +A  + + +E K   P V  
Sbjct: 102 SGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILE-KFGQPDVFA 160

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LING C+   +++A R+ + MRSK   P+  TY+ ++  LC  G    A+++L  ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S   +P ++TY+ L+     EG + EA++++D M  +GLKPD   Y  II   C  G   
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVV 380
            A   +  + L G  P+ +++++ +R                             ++ ++
Sbjct: 281 RAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LC+      A  +   M+ + ++ D+ +Y  LI  FC++G +  +   ++ ++ DGCL
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCL 400

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           PD   ++ V+  L    K  QA E+ 
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIF 426



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 122/237 (51%), Gaps = 7/237 (2%)

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+S +  E++ L E M  KG  P+V   + L+ G        +A+ +++++  K  +P++
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEIL-EKFGQPDV 158

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
             Y+ L+NG CK  ++ +A  +LDRM+ +   PD   Y  +I   C  GK   A   L++
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
           ++     P  +T++  I I  T+++G      + A ++   M +R +  D  TY+++I  
Sbjct: 219 LLSDNCQPTVITYT--ILIEATMLEG----GVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            CK+G + ++  +V  L L G  PD  +++ ++ AL ++ K  +  +L+      KC
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 205/401 (51%), Gaps = 30/401 (7%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G+ +  R  +A  +F+ M   G  P   +Y  ++   ++E  ++ A R    M   G++ 
Sbjct: 320 GFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKL 379

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V + N +I  + K +G M  A  +F EM   G  PD++TY  LI+G  +   + +A EL
Sbjct: 380 NVVTYNAMIGGIAK-AGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACEL 438

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
             EM+ +  +P+  TY+ LI+GLC S  +++A  + ++M   GV+PNVF Y +L+    +
Sbjct: 439 LAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQ 498

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                 A+ELL++MI+    P++  Y+ L+ GLC+  K++EA  +L  M  +G+KP+A  
Sbjct: 499 ESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHT 558

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL---------------------- 371
           YG  I+ +   G+ Q A  +  +M+  GI PN + +++                      
Sbjct: 559 YGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCML 618

Query: 372 ------HIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
                  IR ++ ++  L K    + A  V+L      +  D   Y+SLI+ FCK+GDI 
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           K++++ DE++ +G  P+   ++ ++  L    ++ +A EL 
Sbjct: 679 KASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELF 719



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 226/448 (50%), Gaps = 12/448 (2%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++ L RA+K     +++ D        G + +  T+   I+    + + + AE     + 
Sbjct: 528 IIGLCRAKKVEEAKMLLVDMG----EKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDML 583

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
                    I+  + +G+  V   ++A+  F  M E G  P  ++Y  ++  L +  + K
Sbjct: 584 SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTK 643

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A   +    + G+ P V   N LI   CK  G ++ A +++ EM + G  P+   Y TL
Sbjct: 644 EAMGVFLKFLKTGVVPDVFLYNSLISGFCK-EGDIEKASQLYDEMLHNGINPNIVVYNTL 702

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           INGLC+LG++ +A+ELF E+E K   P VVTY+++I+G C+S ++ EA +LF+EM SKG+
Sbjct: 703 INGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGI 762

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P+ + Y  L+DG  K G   +A+ L      ++   ++  +++L++  CK GK+ EA E
Sbjct: 763 SPDGYIYCILIDGCGKEGNLEKALSLFHEA-QQKSVGSLSAFNSLIDSFCKHGKVIEARE 821

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           + D M  + L P+   Y  +I  +      +EA     +M    I PN LT++  +  +N
Sbjct: 822 LFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYN 881

Query: 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
            +          +   ++  M  R I+ D++ Y  + + +CK+G   ++ +++++ +++G
Sbjct: 882 QIGNRF------KMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG 935

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
              ++  + A++  L   +++    ELL
Sbjct: 936 IKLEDDVFDALIFHLCKEKQISTVLELL 963



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 213/419 (50%), Gaps = 11/419 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S++IS L  ++  + A ++LD++ +        ++ ++ + Y +  R   A+ +   M
Sbjct: 453 TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P    Y  ++  L    +++ A      M E GI+P   +    I    K SG 
Sbjct: 513 IANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSK-SGE 571

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A + F++M + G  P++  Y  LI G C +G   EA   FK M  K   P +  Y++
Sbjct: 572 IQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSA 631

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+ L ++   +EAM +F +    GV P+VF Y+SL+ G CK G   +A +L   M+   
Sbjct: 632 IIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG 691

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PNIV Y+TL+NGLCK G++ +A E+ D ++ + L PD   Y  II  +C  G   EA 
Sbjct: 692 INPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAF 751

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT-Y 410
              DEM+  GI+P+   + +       ++ G C  + N    + L    +  SV SL+ +
Sbjct: 752 KLFDEMISKGISPDGYIYCI-------LIDG-CGKEGNLEKALSLFHEAQQKSVGSLSAF 803

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           +SLI  FCK G + ++  + D++V     P+  T++ ++ A + + +M + AE L L++
Sbjct: 804 NSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDA-YGKAEMMEEAEQLFLDM 861



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 213/452 (47%), Gaps = 45/452 (9%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K   +A +IF+S  +   +G   +  T++ +I   +       A  + D +      + 
Sbjct: 324 QKRSKEAKLIFESMPS---SGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLN 380

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +      AM +F++M   G EP   +Y  ++   ++ + +  A     
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLA 440

Query: 145 HMREIGIQPCVASLNVLIKALCKNS------------------------GTM-------- 172
            M+   + P   + +VLI  LC +S                        GT+        
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES 500

Query: 173 --DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             + A ++ + M   G  PD + Y  LI GLCR  K+ EAK L  +M  K   P   TY 
Sbjct: 501 RYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYG 560

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           + IN   +S  ++ A R F++M S G+ PN   Y+ L+ G C  G + +A+   + M+ K
Sbjct: 561 AFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEK 620

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P+I  YS +++ L K GK +EA+ +  +    G+ PD  LY  +IS FC  G  ++A
Sbjct: 621 GLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKA 680

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
           +   DEM+  GI PN       I ++NT++ GLCK  +  +A +++  +  + +  D +T
Sbjct: 681 SQLYDEMLHNGINPN-------IVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVT 733

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           YS++I  +CK G++ ++ ++ DE++  G  PD
Sbjct: 734 YSTIIDGYCKSGNLTEAFKLFDEMISKGISPD 765



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 187/368 (50%), Gaps = 10/368 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++ + + +V   +    V  +M E  C+P   +Y   +  L +   +  A    + M 
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMM 303

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G+ P   +  +L+   CK   + +A   IF  MP+ G  P+ +TY  LI+G  + G I
Sbjct: 304 EKGLGPDGHTYTLLVDGFCKQKRSKEAKL-IFESMPSSGLNPNRFTYTALIDGFIKEGNI 362

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  +  EM T+     VVTY ++I G+ ++  + +AM LF EM   G+EP+ +TY+ L
Sbjct: 363 EEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLL 422

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG  K    ++A ELL  M +++  P+  TYS L++GLC    LQ+A E+LD+M   G+
Sbjct: 423 IDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGV 482

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KP+  +YG +I  +    +Y+ A   L  M+  G+ P+   +       N ++ GLC+  
Sbjct: 483 KPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCY-------NCLIIGLCRAK 535

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
               A  + + M  + I  ++ TY + I  + K G+I  + R   +++  G +P+   ++
Sbjct: 536 KVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYT 595

Query: 447 AVMTALWD 454
            ++    D
Sbjct: 596 ILIKGHCD 603



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 194/382 (50%), Gaps = 13/382 (3%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           DIF+   R  G ++   +A  VF      G  PT      ++  L++ N + L ++ Y  
Sbjct: 176 DIFIDKFRVLGFLN---EASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGS 232

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E  I P V +   +IKA CK  G +     +  EM  + C P+ +TY   I GLC+ G
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCK-VGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTG 290

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + EA E+ K M  K   P   TYT L++G C+ K  +EA  +FE M S G+ PN FTY+
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYT 350

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG  K G   +A+ +   MI++  + N+VTY+ ++ G+ K G++ +A+ + + M + 
Sbjct: 351 ALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMA 410

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC- 384
           GL+PD   Y  +I  +       +A   L EM    +TP+  T+S+       ++ GLC 
Sbjct: 411 GLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSV-------LISGLCH 463

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
            +D  +A +V   M    +  +   Y +LI  + ++     +  ++  ++ +G LPD   
Sbjct: 464 SSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFC 523

Query: 445 WSAVMTALWDRRKMRQAAELLL 466
           ++ ++  L   +K+ +A  LL+
Sbjct: 524 YNCLIIGLCRAKKVEEAKMLLV 545



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 182/402 (45%), Gaps = 46/402 (11%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           LI+   DV   +    +       G   D   +S +I  L    + + A  +  +    K
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKF--LK 654

Query: 81  CDITEDIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138
             +  D+FL  S+  G+ +      A +++D+M   G  P    Y T++  L +  ++  
Sbjct: 655 TGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTK 714

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A   +  + E  + P V + + +I   CK SG +  AFK+F EM ++G +PD Y Y  LI
Sbjct: 715 ARELFDEIEEKDLVPDVVTYSTIIDGYCK-SGNLTEAFKLFDEMISKGISPDGYIYCILI 773

Query: 199 NG----------------------------------LCRLGKIYEAKELFKEMETKACSP 224
           +G                                   C+ GK+ EA+ELF +M  K  +P
Sbjct: 774 DGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTP 833

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VTYT LI+   +++ +EEA +LF +M ++ + PN  TY+SL+    + G   + + L 
Sbjct: 834 NIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLF 893

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M ++    + + Y  + +  CKEGK  EA+++L++  ++G+K +  ++  +I   C  
Sbjct: 894 KDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKE 953

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
            +       L EM        +   SL  +  NT++ G  K+
Sbjct: 954 KQISTVLELLSEM-------GKEELSLSSKTCNTLLLGFYKS 988



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 144/295 (48%), Gaps = 13/295 (4%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D+  + +RE      T     +   I+    LG + EA  +F    ++   PT++   +
Sbjct: 157 LDSLVRCYREFGGSNLT----VFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNN 212

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+  L ++  +    +++  M    + P+V+TY++++   CK G   +   +L  M  K 
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKE 271

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +PN+ TY+  + GLC+ G + EA+E+   M  +GL PD   Y  ++  FC   + +EA 
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
              + M   G+ PNR T++        ++ G  K  +   A ++   M  R + ++ +TY
Sbjct: 332 LIFESMPSSGLNPNRFTYT-------ALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTY 384

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I    K G++ K+  + +E+++ G  PD  T++ ++        M +A ELL
Sbjct: 385 NAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELL 439



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 166/348 (47%), Gaps = 9/348 (2%)

Query: 25   EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
            E D+ KA  ++D       NG   +   ++ +I+ L    +   A +L D +  E+ D+ 
Sbjct: 674  EGDIEKASQLYDEMLH---NGINPNIVVYNTLINGLCKLGEVTKARELFDEI--EEKDLV 728

Query: 85   EDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
             D+  + +I  GY +     +A ++FD+M   G  P    Y  ++    +E  L+ A   
Sbjct: 729  PDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSL 788

Query: 143  YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
            +   ++  +   +++ N LI + CK+   ++A  ++F +M ++  TP+  TY  LI+   
Sbjct: 789  FHEAQQKSVGS-LSAFNSLIDSFCKHGKVIEAR-ELFDDMVDKKLTPNIVTYTILIDAYG 846

Query: 203  RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
            +   + EA++LF +MET+   P  +TYTSL+    Q  +  + + LF++M ++G+  +  
Sbjct: 847  KAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAI 906

Query: 263  TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
             Y  +    CK G S +A++LL   + +  +     +  L+  LCKE ++   +E+L  M
Sbjct: 907  AYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEM 966

Query: 323  KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
              + L   +     ++  F   G   EA+  L  M   G  P  L+ +
Sbjct: 967  GKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLT 1014


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 224/428 (52%), Gaps = 21/428 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI----CRG--YGRV 98
           G   D  +++ ++  L  A ++   E+L+  + +  C      F ++    CR   + +V
Sbjct: 208 GCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQV 267

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H  L       +M E GC P  + Y T++  + ++   ++A      M   G++P V   
Sbjct: 268 HEALS------QMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCY 321

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N ++K LC ++   + A  +  EM    C  D  T+  L++  C+ G +    EL ++M 
Sbjct: 322 NTVLKGLC-SAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 380

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
              C P V+TYT++ING C+   V+EA+ L + M + G +PN  +Y+ ++ GLC+     
Sbjct: 381 EHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWV 440

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A EL+  MI +   PN VT++TL+N +CK+G +++A+E+L +M + G  PD   Y  +I
Sbjct: 441 DAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVI 500

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
                 GK +EA   L+ M+  GITPN +       I++++   L +    ++  Q++ S
Sbjct: 501 DGLGKAGKTEEALELLNVMINKGITPNTI-------IYSSMASALSREGRTDKIIQMFDS 553

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +++ ++  D+  Y+++I+  CK+ +  ++      +V +GC+P+E T++ ++  L     
Sbjct: 554 IQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGL 613

Query: 458 MRQAAELL 465
           +R+A +LL
Sbjct: 614 VREAQDLL 621



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 182/372 (48%), Gaps = 9/372 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ V D+M   GC  TP     +L         + A R  + +   G      + N+++
Sbjct: 126 DALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVV 185

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A+C+  G +D   ++ R++P+ GC PD  +Y  ++ GLC   +  + +EL  EM    C
Sbjct: 186 SAICEQ-GCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGC 244

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V T+ +LI  LC++   E+      +M   G  P++  Y++++DG+CK G    A +
Sbjct: 245 PPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVAND 304

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +L  M S   +PN+V Y+T+L GLC   + +EA ++L  M  +    D   +  ++  FC
Sbjct: 305 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFC 364

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G        L++M+  G  P+ +T++       TV+ G CK    + A  +  +M   
Sbjct: 365 QNGLVDRVIELLEQMLEHGCIPDVITYT-------TVINGFCKEGLVDEAVMLLKNMSAC 417

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               ++++Y+ ++   C+      +  ++  ++  GCLP+  T++ ++  +  +  + QA
Sbjct: 418 GCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQA 477

Query: 462 AELLLLELMNKC 473
            ELL   L+N C
Sbjct: 478 IELLKQMLVNGC 489



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 215/473 (45%), Gaps = 24/473 (5%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S  +TS+      + +     ++ +  +ATA    G    +   S +I  L +A +   A
Sbjct: 7   SQMLTSSLPAPATKPKPAAATSVSVSAAATAPLDAG---GSGRLSALIRSLCAAGRTADA 63

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
              LD        +  +  ++   GY R      A +V    +     P P +  T   I
Sbjct: 64  ARALDTAGDAAGVVAYNAMIA---GYCR------AGQVAAARRLAAAVPVPPNAYTYFPI 114

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVAS---LNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           +       L       + E+ ++ C A+    +V+++A C+  G   +A +  + +  +G
Sbjct: 115 VRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGG-FRSAVRALQVLHAKG 173

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           CT DS     +++ +C  G + E  EL +++ +  C P +V+Y +++ GLC +K  ++  
Sbjct: 174 CTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVE 233

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            L  EM   G  PNV T+++L+  LC+ G   Q  E L  M      P++  Y+T+++G+
Sbjct: 234 ELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGI 293

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CK+G  + A +IL RM   GLKP+   Y  ++   C   +++EA + L EM       + 
Sbjct: 294 CKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDD 353

Query: 367 LTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           +T+       N +V   C+    +R  ++   M       D +TY+++I  FCK+G + +
Sbjct: 354 VTF-------NILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDE 406

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +  ++  +   GC P+  +++ V+  L    +   A EL+   +   C+   V
Sbjct: 407 AVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPV 459



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 1/248 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++ +I+          A  LL  ++   C      +  + +G  R  R +D
Sbjct: 382 HGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVD 441

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +   M + GC P P ++ T++  + ++  ++ A    + M   G  P + S + +I 
Sbjct: 442 AQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVID 501

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K +G  + A ++   M N+G TP++  Y ++ + L R G+  +  ++F  ++     
Sbjct: 502 GLGK-AGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVR 560

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
                Y ++I+ LC+    + A+  F  M S G  PN  TY+ L+ GL   G   +A +L
Sbjct: 561 SDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDL 620

Query: 284 LQMMISKR 291
           L  + S+R
Sbjct: 621 LSELCSRR 628


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 120/405 (29%), Positives = 220/405 (54%), Gaps = 11/405 (2%)

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK-SYITVL 127
           A  +L+ + ++        +  + +GY +  R  +A RV  +MKE G     + +Y  ++
Sbjct: 272 ARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMI 331

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
               +  ++  A R    MR+ GI   +   N +I  LCK  G M+   K+ +EM + G 
Sbjct: 332 NGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCK-LGRMEEVQKVLQEMEDVGM 390

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            PD Y+Y TLI+G CR G + +A E+ + M     + T +TY +L+ G C   ++++A+R
Sbjct: 391 RPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALR 450

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L+  M  +GV PN  + S+L+DGL K G + QA+ L +  +++    N++T++T++NGLC
Sbjct: 451 LWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLC 510

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K G++ EA E+LDRMK     PD+  Y  +   +C +G+   A + +++M   G  P+  
Sbjct: 511 KIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPS-- 568

Query: 368 TWSLHIRIHNTVVQG-LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
                + + N+ + G       ++   ++  M  R +S + +TY +LI  +CK+G++H++
Sbjct: 569 -----VEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEA 623

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
             +  E+V +G  P+    SA+M+  +   K+ + A L+L +L+N
Sbjct: 624 CNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDE-ANLVLQKLVN 667



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 229/498 (45%), Gaps = 77/498 (15%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  +++ +I         R A ++   + +     T   + ++ +G+  +H   DA
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R++  M + G  P   S  T+L  L +  + + A   ++     G+   V + N +I  
Sbjct: 449 LRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVING 508

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI----------------- 207
           LCK  G M  A ++   M    C PDS TY TL +G C+LG++                 
Sbjct: 509 LCK-IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAP 567

Query: 208 ------------------YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
                             ++  ++  EM  +  SP +VTY +LI G C+  ++ EA  L+
Sbjct: 568 SVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLY 627

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS-------------------- 289
            EM + G+ PNVF  S+LM    K G   +A  +LQ +++                    
Sbjct: 628 FEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHV 687

Query: 290 -------KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
                    H  N++ ++ ++ GLCK G++ +A  + + ++ +   PD   Y  +I    
Sbjct: 688 VDTIADGNPHSANVM-WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCA 746

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G   EA +  D M+  G+TPN +T+       N+++ GLCK+   +RA  ++  ++++
Sbjct: 747 ASGSIDEAFSLRDVMLSAGLTPNIITY-------NSLIYGLCKSGKLSRAVNLFNKLQSK 799

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            IS + +TY++LI  +CK+G   ++ ++  ++V +G  P   T+S ++  L  +  M +A
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEA 859

Query: 462 AELLLLELMNKCVEAEVD 479
                ++L+++ +E  VD
Sbjct: 860 -----IKLLDQMIENNVD 872



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 221/473 (46%), Gaps = 32/473 (6%)

Query: 10  STKITSAQVLQ--LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           S+ +T A +LQ  L R   D + AL +F  A +      R    + + ++  L  A +F 
Sbjct: 65  SSPLTPA-LLQAALRRVRLDPDAALHLFRLAPS------RPSLVSHAQLLHILARARRFH 117

Query: 68  PAEDLLDRVNKEK-------CDITEDIFLS------ICRGYGRVHRPLDAMRVFDKMKEF 114
            A  LL  +            ++  D   S      + R +    +   A+ VFD M + 
Sbjct: 118 DARALLSSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKV 177

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           GC P+ +S   +L  LV+     +A   Y  MR  G+ P   ++ ++ KA C++ G +  
Sbjct: 178 GCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRD-GRVAQ 236

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A +   EM   G   +   Y  +++  C +G   +A+ + + ++ K  SP VVTYT L+ 
Sbjct: 237 AVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVK 296

Query: 235 GLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           G C+   +EEA R+ +EM+  G +  +   Y  +++G C+ G    A  +   M      
Sbjct: 297 GYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIH 356

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
            N+  Y+T++NGLCK G+++E  ++L  M+  G++PD   Y  +I  +C  G  ++A   
Sbjct: 357 VNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEM 416

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
              MV  G+    LT+       NT+++G C     + A +++  M  R ++ + ++ S+
Sbjct: 417 CRMMVRNGLAATTLTY-------NTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCST 469

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           L+    K G   ++  +  E +  G   +  T++ V+  L    +M +A ELL
Sbjct: 470 LLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELL 522



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 208/480 (43%), Gaps = 108/480 (22%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   +  TF+ +I+ L    +   AE+LLDR+ + +C      + ++  GY ++ +  
Sbjct: 492 ARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLG 551

Query: 103 DAMRVFDKMKEFGCEPTPK---SYIT--------------------------------VL 127
            A  + +KM+  G  P+ +   S+IT                                ++
Sbjct: 552 TATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALI 611

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN--- 184
           A   +E  L  A   Y  M   G+ P V   + L+    K  G +D A  + +++ N   
Sbjct: 612 AGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYK-EGKVDEANLVLQKLVNIDM 670

Query: 185 -RGCT--------------------PDSYT--YGTLINGLCRLGKIYEAKELFKEMETKA 221
             GC+                    P S    +  +I GLC+ G+I +AK LF+ +  K 
Sbjct: 671 IPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKR 730

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P   TY+SLI+G   S S++EA  L + M S G+ PN+ TY+SL+ GLCK G  S+A+
Sbjct: 731 FLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAV 790

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            L   + SK   PN +TY+TL++  CKEGK  EA ++  +M  +G++P    Y  +I   
Sbjct: 791 NLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGL 850

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
           C  G  +EA   LD+M+   + PN                                    
Sbjct: 851 CTQGYMEEAIKLLDQMIENNVDPN------------------------------------ 874

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE--GTW---SAVMTALWDRR 456
                 +TY +LI  + K G++ + +++ DE+ + G LP    G W     V+   W+R+
Sbjct: 875 -----YITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTNWIGNWKRSDPVVVNNWNRK 929



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 183/407 (44%), Gaps = 41/407 (10%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F ++  G  ++ R  +A  + D+MKE  C P   +Y T+     +  QL  A      M 
Sbjct: 502 FNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKME 561

Query: 148 EIGIQPCVASLNVLIKA--LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
            +G  P V   N  I    + K    ++    I  EM  RG +P+  TYG LI G C+ G
Sbjct: 562 HLGFAPSVEMFNSFITGHFIAKQWHKVN---DIHSEMSARGLSPNLVTYGALIAGWCKEG 618

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP------ 259
            ++EA  L+ EM     +P V   ++L++   +   V+EA  + +++ +  + P      
Sbjct: 619 NLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSIST 678

Query: 260 ---------------------NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
                                NV  ++ ++ GLCK G  + A  L + + +KR  P+  T
Sbjct: 679 IEIDKISHVVDTIADGNPHSANVM-WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFT 737

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           YS+L++G    G + EA  + D M   GL P+   Y  +I   C  GK   A N  +++ 
Sbjct: 738 YSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQ 797

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
             GI+PN +T+       NT++   CK      AF++   M    I    +TYS LI   
Sbjct: 798 SKGISPNGITY-------NTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGL 850

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           C +G + ++ +++D+++ +   P+  T+  ++        M + ++L
Sbjct: 851 CTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKL 897



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 10/324 (3%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           S ++L++A   ++G + +A  +F  M   GC P   +   L+N L + G    A  ++ +
Sbjct: 150 SFDLLLRAHA-DAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQ 208

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M      P   T   +    C+   V +A+   EEM   G+E N+  Y ++MD  C  G 
Sbjct: 209 MRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGW 268

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG-LKPDAGLYG 335
           +  A  +L+ +  K   PN+VTY+ L+ G CK+G+++EA  ++  MK  G +  D   YG
Sbjct: 269 TEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYG 328

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-V 394
            +I+ +C  G+  +A    +EM   GI  N       + ++NT++ GLCK       Q V
Sbjct: 329 MMINGYCQRGRMDDATRVRNEMRDAGIHVN-------LFVYNTMINGLCKLGRMEEVQKV 381

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M +  +  D  +Y++LI  +C++G + K+  +   +V +G      T++ ++     
Sbjct: 382 LQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCS 441

Query: 455 RRKMRQAAELLLLELMNKCVEAEV 478
              +  A  L  L L       E+
Sbjct: 442 LHAIDDALRLWFLMLKRGVAPNEI 465


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 224/460 (48%), Gaps = 34/460 (7%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           ++++++  L  A + + A  L D +      +T  I +    G+  +    +A+++ D+M
Sbjct: 261 SYNILLKALCDAGRVKDARQLFDEMASAPDVVTYGILI---HGHCALGELENAVKLLDEM 317

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G EP    Y +V+A+L ++  +  A R    M +  +    A    ++   C N G 
Sbjct: 318 VAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFC-NKGD 376

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           + +A + F EM  +G   D  TY T+INGLCR  ++ EA++L +EM  +      VTYT 
Sbjct: 377 LVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTV 436

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G C+   + EA ++   M  +GV PNV TY++L DGLCK G    A ELL  M +K 
Sbjct: 437 LIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKG 496

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              N  TY++L+NGLCK G L++A+  +  M    LKPD   Y  +I   C  G    A 
Sbjct: 497 LELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAH 556

Query: 352 NFLDEMVLGGITPNRLT----------------------WSLHIRIH------NTVVQGL 383
           + L EM+  GI P  +T                      W L   IH      N++++  
Sbjct: 557 SLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQY 616

Query: 384 C-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C + +     ++Y  MR+R +  +  TY+ LI   CK  ++ ++    DE++  G     
Sbjct: 617 CIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTA 676

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            ++SA++  L  ++K  +A E L  ++  + + AE D+ +
Sbjct: 677 TSYSALIRLLNKKKKFVEARE-LFHDMRKEGLTAESDVYD 715



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 184/371 (49%), Gaps = 13/371 (3%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           S  +L+  K   ++  R  ED++ R    K  + E ++ ++  G+      + A R FD+
Sbjct: 331 SVVALLCDKGWISDALRVVEDMVQR----KVILDEALYTTVLSGFCNKGDLVSARRWFDE 386

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M+  G      +Y T++  L    +L+ A +  + M    +     +  VLI   CK  G
Sbjct: 387 MQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKR-G 445

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            M  AF++   M  RG TP+  TY  L +GLC+ G +  A EL  EM  K       TY 
Sbjct: 446 KMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYN 505

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           SLINGLC++  +E+AMR   +M +  ++P+V+TY++L+D LCK G   +A  LLQ M+ K
Sbjct: 506 SLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDK 565

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +P IVTY+ L+NG C  G+++   ++LD M  + + P+A  Y  ++  +C     +  
Sbjct: 566 GIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKST 625

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
                 M    + PN  T+       N +++G CK  +   A   +  M  +   + + +
Sbjct: 626 TEIYKGMRSRDVGPNENTY-------NILIKGHCKARNMKEALYFHDEMIQKGFRLTATS 678

Query: 410 YSSLITCFCKK 420
           YS+LI    KK
Sbjct: 679 YSALIRLLNKK 689



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 177/390 (45%), Gaps = 42/390 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ MI+ L  A +   AE LL  +   + D+ E  +  +  GY +       
Sbjct: 391 GLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKR------ 444

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
                KM E                         AF+ +  M + G+ P V +   L   
Sbjct: 445 ----GKMAE-------------------------AFQMHNAMVQRGVTPNVVTYTALTDG 475

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK  G + AA ++  EM N+G   ++ TY +LINGLC+ G + +A     +M+T    P
Sbjct: 476 LCKQ-GDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKP 534

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TYT+LI+ LC+S  ++ A  L +EM  KG++P + TY+ LM+G C  G      +LL
Sbjct: 535 DVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLL 594

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+ K   PN  TY++L+   C E  ++   EI   M+ + + P+   Y  +I   C  
Sbjct: 595 DWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKA 654

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
              +EA  F DEM+  G      ++S  IR+ N       K     A +++  MR   ++
Sbjct: 655 RNMKEALYFHDEMIQKGFRLTATSYSALIRLLNK------KKKFVEARELFHDMRKEGLT 708

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            +S  Y   I     + ++  +  + DELV
Sbjct: 709 AESDVYDFYIDLNFNEDNLESTLALCDELV 738



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 196/382 (51%), Gaps = 21/382 (5%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           L +  +  +++++G  P+P++   VL+ L  +  ++L F+   H         V S N+L
Sbjct: 214 LPSAPLLRRLRQYGISPSPEACNAVLSRLPLDEAIEL-FQELPHKN-------VCSYNIL 265

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +KALC ++G +  A ++F EM      PD  TYG LI+G C LG++  A +L  EM    
Sbjct: 266 LKALC-DAGRVKDARQLFDEM---ASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGG 321

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P    YTS++  LC    + +A+R+ E+M  + V  +   Y++++ G C  G    A 
Sbjct: 322 VEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSAR 381

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
                M  K    + VTY+T++NGLC+  +L+EA ++L  M  + L  D   Y  +I  +
Sbjct: 382 RWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGY 441

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C  GK  EA    + MV  G+TPN +T++        +  GLCK  D   A ++   M N
Sbjct: 442 CKRGKMAEAFQMHNAMVQRGVTPNVVTYT-------ALTDGLCKQGDVQAANELLHEMSN 494

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + + +++ TY+SLI   CK G + ++ R + ++      PD  T++ ++ AL     + +
Sbjct: 495 KGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDR 554

Query: 461 AAELLLLELMNKCVEAEVDIQN 482
           A   LL E+++K ++  +   N
Sbjct: 555 AHS-LLQEMLDKGIKPTIVTYN 575


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 224/475 (47%), Gaps = 51/475 (10%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           DV +A  I  SA      G R D   ++  +   V+A     A  +L R+ ++       
Sbjct: 10  DVRRAFGILASA------GARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNA 63

Query: 87  I-FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             +  +  G  R  R  DA+ VFD+M E    P   +Y T++   ++   L+  FR    
Sbjct: 64  FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQ 123

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY----------- 194
           M   G++P   + NVL+  LC+ +G M     +  EM ++   PD +TY           
Sbjct: 124 MVCHGLKPNAITYNVLLSGLCR-AGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNG 182

Query: 195 ------------------------GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
                                     L+NGLC+ GK+  A+E+ + +      PT V Y 
Sbjct: 183 DSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYN 242

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LING CQ+  +E A   F +M+S+ ++P+  TY++L++GLCK    + A +LL  M   
Sbjct: 243 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDN 302

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P + T++TL++   + G+L++   +L  M+  GLKP+   YG I++ FC  GK  EA
Sbjct: 303 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 362

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLT 409
              LD+M    + PN        +++N ++    +  PN +AF +   M++  IS   +T
Sbjct: 363 VAILDDMFHKDVLPN-------AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 415

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+ LI   C +  I ++  I++ L     +PD  +++ +++A   R  + +A +L
Sbjct: 416 YNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDL 470



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 213/435 (48%), Gaps = 16/435 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRV---NKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           T++ MI   +          L D++     +   IT ++ LS   G  R  R  +   + 
Sbjct: 100 TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLS---GLCRAGRMGETSALL 156

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M      P   +Y  +   L      K     +    + G+     + ++L+  LCK+
Sbjct: 157 DEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKD 216

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A ++ + + N G  P    Y TLING C+ G++  A   F +M+++   P  +T
Sbjct: 217 -GKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHIT 275

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LINGLC+++ +  A  L  EM+  GV P V T+++L+D   + G   +   +L  M 
Sbjct: 276 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 335

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
               +PN+V+Y +++N  CK GK+ EAV ILD M  + + P+A +Y  II  + + G   
Sbjct: 336 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 395

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDS 407
           +A   +++M   GI+P+ +T++L       +++GLC ++  + A ++  S+ N  +  D+
Sbjct: 396 QAFILVEKMKSNGISPSIVTYNL-------LIKGLCNQSQISEAEEIINSLSNHRLIPDA 448

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           ++Y++LI+  C +G+I K+  +   +   G      T+  +++ L    ++ +  E L  
Sbjct: 449 VSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNE-MEYLYQ 507

Query: 468 ELMNKCVEAEVDIQN 482
           ++M   V     I N
Sbjct: 508 KMMQNNVVPSNAIHN 522



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 174/368 (47%), Gaps = 10/368 (2%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA-SL 158
           R  D  R F  +   G  P   ++   +   V    L  A    R M   G  P  A S 
Sbjct: 7   RHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSY 66

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           NV+I  + + +G    A ++F EM  R   P+  TY T+I+G  + G +     L  +M 
Sbjct: 67  NVVIAGMWR-AGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 125

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P  +TY  L++GLC++  + E   L +EM S+ + P+ FTYS L DGL + G S 
Sbjct: 126 CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSK 185

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
             + L    +         T S LLNGLCK+GK+  A E+L  +   GL P   +Y  +I
Sbjct: 186 AMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLI 245

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           + +C  G+ + A +   +M    I P+ +T+       N ++ GLCK +    A  + + 
Sbjct: 246 NGYCQTGELEGAFSTFGQMKSRHIKPDHITY-------NALINGLCKAERITNAQDLLME 298

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M++  ++    T+++LI  + + G + K   ++ E+  +G  P+  ++ +++ A     K
Sbjct: 299 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 358

Query: 458 MRQAAELL 465
           + +A  +L
Sbjct: 359 IPEAVAIL 366



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 165/342 (48%), Gaps = 8/342 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG    + T S++++ L    +   AE++L  +       T  I+ ++  GY +      
Sbjct: 197 NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEG 256

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A   F +MK    +P   +Y  ++  L +  ++  A      M++ G+ P V + N LI 
Sbjct: 257 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 316

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A  + +G ++  F +  EM   G  P+  +YG+++N  C+ GKI EA  +  +M  K   
Sbjct: 317 AYGR-TGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 375

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    Y ++I+   +    ++A  L E+M+S G+ P++ TY+ L+ GLC     S+A E+
Sbjct: 376 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 435

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  + + R  P+ V+Y+TL++  C  G + +A+++  RM   G+K     Y ++IS    
Sbjct: 436 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 495

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            G+  E      +M+   + P+         IHN +V+   K
Sbjct: 496 AGRLNEMEYLYQKMMQNNVVPSN-------AIHNIMVEAYSK 530



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 131/271 (48%), Gaps = 1/271 (0%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G  +  R  +A  +  +M++ G  PT +++ T++       QL+  F     M+
Sbjct: 276 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 335

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G++P V S   ++ A CKN G +  A  I  +M ++   P++  Y  +I+     G  
Sbjct: 336 ENGLKPNVVSYGSIVNAFCKN-GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPN 394

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  L ++M++   SP++VTY  LI GLC    + EA  +   + +  + P+  +Y++L
Sbjct: 395 DQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTL 454

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +   C  G   +A++L Q M     +  + TY  L++GL   G+L E   +  +M    +
Sbjct: 455 ISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 514

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
            P   ++  ++  +   G   +A +   EM+
Sbjct: 515 VPSNAIHNIMVEAYSKYGNEIKAEDLRKEML 545



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 39/284 (13%)

Query: 47  RH---DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           RH   D+ T++ +I+ L  A +   A+DLL  +     + T + F ++   YGR  +   
Sbjct: 267 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 326

Query: 104 AMRVFDKMKEFGCEPTPKSYITVL-------------AIL-------------------- 130
              V  +M+E G +P   SY +++             AIL                    
Sbjct: 327 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 386

Query: 131 --VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
             VE      AF     M+  GI P + + N+LIK LC N   +  A +I   + N    
Sbjct: 387 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLC-NQSQISEAEEIINSLSNHRLI 445

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD+ +Y TLI+  C  G I +A +L + M       TV TY  LI+GL  +  + E   L
Sbjct: 446 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 505

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           +++M    V P+   ++ +++   K G   +A +L + M+ KR+
Sbjct: 506 YQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRN 549


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 212/383 (55%), Gaps = 11/383 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK-SYITVLAILVEENQLKLAFRFYRHMREI 149
           + +GY +  R  +A RV  +MKE G     + +Y  ++    +  ++  A R    MR+ 
Sbjct: 294 LVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDA 353

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           GI   +   N +I  LCK  G M+   K+ +EM + G  PD Y+Y TLI+G CR G + +
Sbjct: 354 GIHVNLFVYNTMINGLCK-LGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRK 412

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A E+ + M     + T +TY +L+ G C   ++++A+RL+  M  +GV PN  + S+L+D
Sbjct: 413 AFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLD 472

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GL K G + QA+ L +  +++    N++T++T++NGLCK G++ EA E+LDRMK     P
Sbjct: 473 GLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPP 532

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG-LCKTDP 388
           D+  Y  +   +C +G+   A + +++M   G  P+       + + N+ + G       
Sbjct: 533 DSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPS-------VEMFNSFITGHFIAKQW 585

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           ++   ++  M  R +S + +TY +LI  +CK+G++H++  +  E+V +G  P+    SA+
Sbjct: 586 HKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSAL 645

Query: 449 MTALWDRRKMRQAAELLLLELMN 471
           M+  +   K+ + A L+L +L+N
Sbjct: 646 MSCFYKEGKVDE-ANLVLQKLVN 667



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 221/473 (46%), Gaps = 32/473 (6%)

Query: 10  STKITSAQVLQ--LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           S+ +T A +LQ  L R   D + AL +F  A +      R    + + ++  L  A +F 
Sbjct: 65  SSPLTPA-LLQAALRRVRLDPDAALHLFRLAPS------RPSLVSHAQLLHILARARRFH 117

Query: 68  PAEDLLDRVNKEK-------CDITEDIFLS------ICRGYGRVHRPLDAMRVFDKMKEF 114
            A  LL  +            ++  D   S      + R +    +   A+ VFD M + 
Sbjct: 118 DARALLSSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKV 177

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           GC P+ +S   +L  LV+     +A   Y  MR  G+ P   ++ ++ KA C++ G +  
Sbjct: 178 GCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRD-GRVAQ 236

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A +   EM   G   +   Y  +++  C +G   +A+ + + ++ K  SP VVTYT L+ 
Sbjct: 237 AVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVK 296

Query: 235 GLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           G C+   +EEA R+ +EM+  G +  +   Y  +++G C+ G    A  +   M      
Sbjct: 297 GYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIH 356

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
            N+  Y+T++NGLCK G+++E  ++L  M+  G++PD   Y  +I  +C  G  ++A   
Sbjct: 357 VNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEM 416

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
              MV  G+    LT+       NT+++G C     + A +++  M  R ++ + ++ S+
Sbjct: 417 CRMMVRNGLAATTLTY-------NTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCST 469

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           L+    K G   ++  +  E +  G   +  T++ V+  L    +M +A ELL
Sbjct: 470 LLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELL 522



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 208/456 (45%), Gaps = 72/456 (15%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  +++ +I         R A ++   + +     T   + ++ +G+  +H   DA
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R++  M + G  P   S  T+L  L +  + + A   ++     G+   V + N +I  
Sbjct: 449 LRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVING 508

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI----------------- 207
           LCK  G M  A ++   M    C PDS TY TL +G C+LG++                 
Sbjct: 509 LCK-IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAP 567

Query: 208 ------------------YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
                             ++  ++  EM  +  SP +VTY +LI G C+  ++ EA  L+
Sbjct: 568 SVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLY 627

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS-------------------- 289
            EM + G+ PNVF  S+LM    K G   +A  +LQ +++                    
Sbjct: 628 FEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHV 687

Query: 290 -------KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
                    H  N++ ++ ++ GLCK G++ +A  + + ++ +   PD   Y  +I    
Sbjct: 688 VDTIADGNPHSANVM-WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCA 746

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G   EA +  D M+  G+TPN +T+       N+++ GLCK+   +RA  ++  ++++
Sbjct: 747 ASGSIDEAFSLRDVMLSAGLTPNIITY-------NSLIYGLCKSGKLSRAVNLFNKLQSK 799

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
            IS + +TY++LI  +CK+G   ++ ++  ++V +G
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEG 835



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 183/420 (43%), Gaps = 62/420 (14%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F ++  G  ++ R  +A  + D+MKE  C P   +Y T+     +  QL  A      M 
Sbjct: 502 FNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKME 561

Query: 148 EIGIQPCVASLNVLIKA--LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
            +G  P V   N  I    + K    ++    I  EM  RG +P+  TYG LI G C+ G
Sbjct: 562 HLGFAPSVEMFNSFITGHFIAKQWHKVN---DIHSEMSARGLSPNLVTYGALIAGWCKEG 618

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP------ 259
            ++EA  L+ EM     +P V   ++L++   +   V+EA  + +++ +  + P      
Sbjct: 619 NLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSIST 678

Query: 260 ---------------------NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
                                NV  ++ ++ GLCK G  + A  L + + +KR  P+  T
Sbjct: 679 IEIDKISHVVDTIADGNPHSANVM-WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFT 737

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           YS+L++G    G + EA  + D M   GL P+   Y  +I   C  GK   A N  +++ 
Sbjct: 738 YSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQ 797

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-----------------RAFQVYLSMRNR 401
             GI+PN +T+       NT++   CK                      A ++   M   
Sbjct: 798 SKGISPNGITY-------NTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIEN 850

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE--GTW---SAVMTALWDRR 456
           ++  + +TY +LI  + K G++ + +++ DE+ + G LP    G W     V+   W+R+
Sbjct: 851 NVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTNWIGNWKRSDPVVVNNWNRK 910



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 174/398 (43%), Gaps = 76/398 (19%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   +  TF+ +I+ L    +   AE+LLDR+ + +C      + ++  GY ++ +  
Sbjct: 492 ARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLG 551

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  + +KM+  G  P+ + + + +       Q       +  M   G+ P + +   LI
Sbjct: 552 TATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALI 611

Query: 163 KALCKNS----------------------------------GTMDAAFKIFREMPN---- 184
              CK                                    G +D A  + +++ N    
Sbjct: 612 AGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMI 671

Query: 185 RGCT--------------------PDSYT--YGTLINGLCRLGKIYEAKELFKEMETKAC 222
            GC+                    P S    +  +I GLC+ G+I +AK LF+ +  K  
Sbjct: 672 PGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRF 731

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   TY+SLI+G   S S++EA  L + M S G+ PN+ TY+SL+ GLCK G  S+A+ 
Sbjct: 732 LPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVN 791

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGK----------------LQEAVEILDRMKLQG 326
           L   + SK   PN +TY+TL++  CKEGK                ++EA+++LD+M    
Sbjct: 792 LFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENN 851

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           + P+   Y  +I  +   G  +E +   DEM + G+ P
Sbjct: 852 VDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 889



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 10/324 (3%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           S ++L++A   ++G + +A  +F  M   GC P   +   L+N L + G    A  ++ +
Sbjct: 150 SFDLLLRAHA-DAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQ 208

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M      P   T   +    C+   V +A+   EEM   G+E N+  Y ++MD  C  G 
Sbjct: 209 MRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGW 268

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG-LKPDAGLYG 335
           +  A  +L+ +  K   PN+VTY+ L+ G CK+G+++EA  ++  MK  G +  D   YG
Sbjct: 269 TEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYG 328

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-V 394
            +I+ +C  G+  +A    +EM   GI  N       + ++NT++ GLCK       Q V
Sbjct: 329 MMINGYCQRGRMDDATRVRNEMRDAGIHVN-------LFVYNTMINGLCKLGRMEEVQKV 381

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M +  +  D  +Y++LI  +C++G + K+  +   +V +G      T++ ++     
Sbjct: 382 LQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCS 441

Query: 455 RRKMRQAAELLLLELMNKCVEAEV 478
              +  A  L  L L       E+
Sbjct: 442 LHAIDDALRLWFLMLKRGVAPNEI 465


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 222/434 (51%), Gaps = 16/434 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  TF+ +I  L    Q + A    D+V        +  + ++  G  +V     A
Sbjct: 150 GYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAA 209

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  ++     +P    Y T++  + +   +  AF  +  M   GI P V + + LI  
Sbjct: 210 LDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISG 269

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G ++ A  +F +M      PD YT+  L+N  C+ GK+ E K +F  M  +   P
Sbjct: 270 FCI-LGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP 328

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY SL++G C  K V +A  +F  M   GV P++ +YS +++G CK     +AM L 
Sbjct: 329 NFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLF 388

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P++VTYS+L++GL K G++  A++++D+M  +G+ P    Y  I+   C I
Sbjct: 389 KEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKI 448

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT----DPNRAFQVYLSMRN 400
            +  +A   L ++   GI PN  T+S+       +++GLC++    D  + F+  L ++ 
Sbjct: 449 HQVDKAIALLTKLKDKGIQPNMYTYSI-------LIKGLCQSGKLEDARKVFEGLL-VKG 500

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
            +++VD  TY+ +I  FC +G  +++  ++ ++  +GC+PD  T+  ++ +L+ ++    
Sbjct: 501 HNLNVD--TYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLF-KKDEND 557

Query: 461 AAELLLLELMNKCV 474
            AE LL E++ + V
Sbjct: 558 MAEKLLREMIARGV 571



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 199/399 (49%), Gaps = 44/399 (11%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F+++      P    +  +L  LV+           + M   GI+P + + N+LI
Sbjct: 68  DAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILI 127

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYT----------------------------- 193
              C+  G +  AF +F ++   G  PD+ T                             
Sbjct: 128 NCFCQ-LGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGF 186

Query: 194 ------YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                 YGTLI+GLC++G+   A +L + ++     P VV Y ++I+ +C+ K V EA  
Sbjct: 187 HFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFD 246

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           LF EM SKG+ P+V TYS+L+ G C  G  + A++L   MI +  +P++ T++ L+N  C
Sbjct: 247 LFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFC 306

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K+GK++E   + D M  QG+KP+   Y  ++  +C + +  +A +  + M  GG+ P+  
Sbjct: 307 KDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQ 366

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           ++S+       ++ G CK    + A  ++  M  ++I  D +TYSSLI    K G I  +
Sbjct: 367 SYSI-------MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYA 419

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++VD++   G  P   T+++++ AL    ++ +A  LL
Sbjct: 420 LQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALL 458



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 221/445 (49%), Gaps = 17/445 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++ +  +  + +A +  D   A    GF  D  ++  +I  L    + R A DL
Sbjct: 156 ITFTTLIKGLCLKGQIQQAFLFHDKVVAL---GFHFDQISYGTLIHGLCKVGETRAALDL 212

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L RV+         ++ +I     +V    +A  +F +M   G  P   +Y  +++    
Sbjct: 213 LQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCI 272

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             +L  A   +  M    I+P V + N+L+ A CK+ G M     +F  M  +G  P+  
Sbjct: 273 LGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKD-GKMKEGKTVFDMMMKQGIKPNFV 331

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +L++G C + ++ +AK +F  M     +P + +Y+ +ING C+ K  +EAM LF+EM
Sbjct: 332 TYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM 391

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             K + P+V TYSSL+DGL K G  S A++L+  M  +   P I TY+++L+ LCK  ++
Sbjct: 392 HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQV 451

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            +A+ +L ++K +G++P+   Y  +I   C  GK ++A    + +++ G   N  T++  
Sbjct: 452 DKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYT-- 509

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
           I I    V+GL     N A  +   M +     D+ TY  +I    KK +   + +++ E
Sbjct: 510 IMIQGFCVEGLF----NEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLRE 565

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRK 457
           ++  G  P +        A+W ++K
Sbjct: 566 MIARGVRPRQ-------IAIWFQKK 583



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 175/380 (46%), Gaps = 44/380 (11%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           SY +        N +  A   +  +      P     N ++ +L K S        + ++
Sbjct: 52  SYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVK-SKHYHTVLYLSQK 110

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  RG  P+      LIN  C+LG I  A  +F ++      P  +T+T+LI GLC    
Sbjct: 111 MEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQ 170

Query: 242 VEEAMRLFEEMRSKG-----------------------------------VEPNVFTYSS 266
           +++A    +++ + G                                   V+PNV  Y++
Sbjct: 171 IQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNT 230

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++D +CK    ++A +L   MISK   P++VTYS L++G C  GKL +A+++ ++M L+ 
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILEN 290

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           +KPD   +  +++ FC  GK +E     D M+  GI PN +T+       N+++ G C  
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTY-------NSLMDGYCLV 343

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            + N+A  ++ +M    ++ D  +YS +I  FCK     ++  +  E+     +PD  T+
Sbjct: 344 KEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTY 403

Query: 446 SAVMTALWDRRKMRQAAELL 465
           S+++  L    ++  A +L+
Sbjct: 404 SSLIDGLSKSGRISYALQLV 423



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 123/268 (45%), Gaps = 29/268 (10%)

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           ++Y+S       +  V++A+ LF  +  +   P  F ++ ++  L K       + L Q 
Sbjct: 51  ISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQK 110

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M  +  +PN+V  + L+N  C+ G +  A  +  ++   G  PD   +  +I   C  G+
Sbjct: 111 MEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQ 170

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNT 378
            Q+A  F D++V  G   +++++   I                             ++NT
Sbjct: 171 IQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNT 230

Query: 379 VVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++  +CK    N AF ++  M ++ IS D +TYS+LI+ FC  G ++ +  + ++++L+ 
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILEN 290

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD  T++ ++ A     KM++   + 
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVF 318


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 235/481 (48%), Gaps = 52/481 (10%)

Query: 13  ITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           ++ A + +L++A    K V+KAL +F  A        +  +ST++ +I  L+   Q    
Sbjct: 160 VSPAVLSELVKALGRAKMVSKALSVFYQAKGRKC---KPTSSTYNSVILMLMQEGQHEKV 216

Query: 70  EDLLDRV-NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
            ++   + N+  C      + ++   Y ++ R   A+R+FD+MK+   +PT K Y T+L 
Sbjct: 217 HEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLG 276

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
           I  +  +++ A   +  M+  G  P V +   LIK L K +G +D A+  +++M   G T
Sbjct: 277 IYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGK-AGRVDEAYGFYKDMLRDGLT 335

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMR 247
           PD      L+N L ++G++ E   +F EM    C+PTVV+Y ++I  L +SK+ V E   
Sbjct: 336 PDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSS 395

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
            F++M++  V P+ FTYS L+DG CK     +A+ LL+ M  K   P    Y +L+N L 
Sbjct: 396 WFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALG 455

Query: 308 KE-----------------------------------GKLQEAVEILDRMKLQGLKPDAG 332
           K                                    GKL EAV++ + MK QG  PD  
Sbjct: 456 KAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVY 515

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRA 391
            Y  ++S     G   EA + L +M   G   +       I  HN ++ G  +T  P RA
Sbjct: 516 AYNALMSGMVKAGMINEANSLLRKMEENGCRAD-------INSHNIILNGFARTGVPRRA 568

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            +++ ++++  I  D +TY++L+ CF   G   ++AR++ E+   G   D  T+S+++ A
Sbjct: 569 IEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDA 628

Query: 452 L 452
           +
Sbjct: 629 V 629



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 226/495 (45%), Gaps = 28/495 (5%)

Query: 6   MFKWSTKITSA-QVLQL----------IRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW      A +VL+L          +  + ++N  +  F  A       F+HD ST+ 
Sbjct: 73  IFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKR--RNFQHDCSTYM 130

Query: 55  LMISKLVSANQFRPAEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
            +I  L  A  +      +  V +     ++  +   + +  GR      A+ VF + K 
Sbjct: 131 TLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKG 190

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTM 172
             C+PT  +Y +V+ +L++E Q +     Y  M  E    P   + + LI +  K  G  
Sbjct: 191 RKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEK-LGRN 249

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D+A ++F EM +    P    Y TL+    ++GK+ +A +LF+EM+   CSPTV TYT L
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I GL ++  V+EA   +++M   G+ P+V   ++LM+ L K G   +   +   M   R 
Sbjct: 310 IKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRC 369

Query: 293 RPNIVTYSTLLNGLCK-EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            P +V+Y+T++  L + +  + E     D+MK   + P    Y  +I  +C   + ++A 
Sbjct: 370 TPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKAL 429

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTY 410
             L+EM   G  P    +        +++  L K     A  +++  ++    +V S  Y
Sbjct: 430 LLLEEMDEKGFPPCPAAYC-------SLINALGKAKRYEAADELFKELKENFGNVSSRVY 482

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           + +I  F K G + ++  + +E+   G  PD   ++A+M+ +     + +A  LL     
Sbjct: 483 AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEE 542

Query: 471 NKCVEAEVDIQNQDV 485
           N C     DI + ++
Sbjct: 543 NGC---RADINSHNI 554


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 232/497 (46%), Gaps = 57/497 (11%)

Query: 8   KWSTKITSAQ----VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           K+++ IT  Q    VL  IR +  +  AL  F     +   GF+     F  ++  LV  
Sbjct: 97  KFNSVITDPQLLIRVLYSIREKPTI--ALRFFKCVLTQ--PGFKTSEYAFCAILQILVDN 152

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
              + A  +++R+   +     D+ +     Y         + VF+KM      P  K+ 
Sbjct: 153 CLMKSAYWVMERIISFEMYGIVDVLIGGYLNY-------QCLLVFEKMMRNRFLPDVKNC 205

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             +L IL ++N L  A   YR M E GI+P V + N ++ + CK  G +  A  +  +M 
Sbjct: 206 NRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCK-GGEVQRALDLVPKMQ 264

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
            RGC P   T+  LINGL + G++ +AK L +EM       +  TY  LI G C+   + 
Sbjct: 265 ERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLV 324

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           EA+ L+EEM ++GV P V +++++M G CK G  S A + L  M+ K   P+I++Y+TL+
Sbjct: 325 EALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLI 384

Query: 304 NGLCKEGKLQEAVEILDRMKL-----------------------------------QGLK 328
            G C+ G + EA  +LD ++                                    +G+ 
Sbjct: 385 YGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIH 444

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           PD   Y  +++  C +G    A  F DEM+  G+ P++  ++  I      V  L   D 
Sbjct: 445 PDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARI------VGELKLGDT 498

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
            +AF++   M  +    D +TY+  +   CK G++ ++  ++ +++ DG +PD  T+++ 
Sbjct: 499 AKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSF 558

Query: 449 MTALWDRRKMRQAAELL 465
           M A  +   +R+  E+ 
Sbjct: 559 MHAHMENGHLREGREIF 575



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 215/413 (52%), Gaps = 7/413 (1%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+++I+ L    + + A+ L+  + K    ++   +  +  GY +    ++A+ ++++M
Sbjct: 274 TFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEM 333

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  PT  S+ T++    +E ++  A +    M +  + P + S N LI   C+  G 
Sbjct: 334 VTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCR-LGN 392

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  AF +  E+  R  + +  TY TLI+GLCRLG +  A +L ++M  +   P VVTYT 
Sbjct: 393 IGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTV 452

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+NG C+  ++  A   F+EM   G+ P+ F Y++ + G  K G +++A +L + M++K 
Sbjct: 453 LVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKG 512

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+++TY+  +NGLCK G L+EA E+L +M   G  PD   Y   +    + G  +E  
Sbjct: 513 FPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGR 572

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
               +M+  G TP  +T++  + IH   + G      + A   +L M+ + +  + +TY+
Sbjct: 573 EIFYDMLSRGQTPTVVTYT--VLIHAHALNGRL----DWAMAYFLEMQEKGVVPNVITYN 626

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            LI  FCK   + ++ +   E+   G  P++ T++ ++    +  K ++A  L
Sbjct: 627 VLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRL 679



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 147/294 (50%), Gaps = 10/294 (3%)

Query: 70  EDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           ED+++R       I  D+  +  +  G  ++   L A   FD+M   G  P   +Y   +
Sbjct: 436 EDMINR------GIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARI 489

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
              ++      AF+    M   G  P V + NV +  LCK  G ++ A ++ ++M   G 
Sbjct: 490 VGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCK-LGNLEEAGELLQKMIRDGH 548

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            PD  TY + ++     G + E +E+F +M ++  +PTVVTYT LI+    +  ++ AM 
Sbjct: 549 VPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMA 608

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
            F EM+ KGV PNV TY+ L++G CK     QA +    M  K   PN  TY+ L+N  C
Sbjct: 609 YFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENC 668

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
             GK QEA+ +  +M  + ++PD+  +G ++       K Q A  F++ ++L G
Sbjct: 669 NMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKLDKDYKVQ-AVQFIESLILDG 721



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 131/265 (49%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+++ + M   G  P   +Y  ++    +   + +A  F+  M  +G+ P   +    I 
Sbjct: 431 ALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIV 490

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
              K  G    AFK+  EM  +G  PD  TY   +NGLC+LG + EA EL ++M      
Sbjct: 491 GELK-LGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHV 549

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTYTS ++   ++  + E   +F +M S+G  P V TY+ L+      G    AM  
Sbjct: 550 PDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAY 609

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M  K   PN++TY+ L+NG CK  K+ +A +    M+ +G+ P+   Y  +I+  C+
Sbjct: 610 FLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCN 669

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
           +GK+QEA     +M+   I P+  T
Sbjct: 670 MGKWQEALRLYAQMLGKRIRPDSCT 694


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 179/333 (53%), Gaps = 9/333 (2%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N +  +      M ++GI P   + N LI  LC N G +  A ++F EM  RG  P+  +
Sbjct: 142 NHVDFSVSVLGKMFKLGIHPDAITFNALINGLC-NEGKIKEAVELFNEMVKRGHEPNVIS 200

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y T+INGLC+ G    A ++FK+ME   C P VVTY+++I+ LC+ + V +AM    EM 
Sbjct: 201 YTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMV 260

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            +G+ PNVFTY+S++ G C  G  ++A  L + M+ +   PN VT++ L++GLCKEG + 
Sbjct: 261 ERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVS 320

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA  + + M  +G++PD   Y  ++  +C      EA    + M+  G  P   ++    
Sbjct: 321 EARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSY---- 376

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              N ++ G CK+   + A  +   M +++++ D++TYS+L+   C+ G   ++  +  E
Sbjct: 377 ---NILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKE 433

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +   G  P+  T+  ++        + +A +LL
Sbjct: 434 MCSYGPHPNLVTYVILLDGFCKHGHLDEALKLL 466



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 208/426 (48%), Gaps = 44/426 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ +I+ L +  + + A +L + + K   +     + ++  G  +      A
Sbjct: 158 GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMA 217

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + VF KM++ GC+P   +Y T++  L ++  +  A  F   M E GI P V + N ++  
Sbjct: 218 VDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHG 277

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY---------------- 208
            C N G ++ A ++F+EM  R   P++ T+  L++GLC+ G +                 
Sbjct: 278 FC-NLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEP 336

Query: 209 -------------------EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
                              EAK++F+ M  K C+P   +Y  LING C+S+ ++EA  L 
Sbjct: 337 DISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLL 396

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            EM  K + P+  TYS+LM GLC+ G   +A+ L + M S    PN+VTY  LL+G CK 
Sbjct: 397 AEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKH 456

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G L EA+++L  MK + L+P+   Y  +I      GK + A     ++   G  P+    
Sbjct: 457 GHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPD---- 512

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
              IR +  +++GL K    + A+ ++  M +     +S +Y+ +I  F +  D   + R
Sbjct: 513 ---IRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIR 569

Query: 429 IVDELV 434
           ++DE+V
Sbjct: 570 LIDEMV 575



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 181/364 (49%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F +M      P+   +   L    ++ Q          M    +   V SLN+LI
Sbjct: 76  DALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILI 135

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+    +D +  +  +M   G  PD+ T+  LINGLC  GKI EA ELF EM  +  
Sbjct: 136 NCLCR-LNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGH 194

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V++YT++INGLC++ +   A+ +F++M   G +PNV TYS+++D LCK    + AME
Sbjct: 195 EPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAME 254

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L  M+ +   PN+ TY+++++G C  G+L EA  +   M  + + P+   +  ++   C
Sbjct: 255 FLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLC 314

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
             G   EA    + M   G+ P+       I  +N ++ G C +   N A +V+  M  +
Sbjct: 315 KEGMVSEARLVFETMTEKGVEPD-------ISTYNALMDGYCLQRLMNEAKKVFEIMIRK 367

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             +  + +Y+ LI  +CK   + ++  ++ E+      PD  T+S +M  L    + ++A
Sbjct: 368 GCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEA 427

Query: 462 AELL 465
             L 
Sbjct: 428 LNLF 431



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 187/372 (50%), Gaps = 9/372 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG + +  T+S +I  L        A + L  + +         + SI  G+  + +  +
Sbjct: 227 NGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNE 286

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A R+F +M      P   ++  ++  L +E  +  A   +  M E G++P +++ N L+ 
Sbjct: 287 ATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMD 346

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C     M+ A K+F  M  +GC P +++Y  LING C+  ++ EAK L  EM  KA +
Sbjct: 347 GYCLQR-LMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALN 405

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY++L+ GLCQ    +EA+ LF+EM S G  PN+ TY  L+DG CK G   +A++L
Sbjct: 406 PDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKL 465

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ M  K+  PNIV Y+ L+ G+   GKL+ A E+  ++   G +PD   Y  +I     
Sbjct: 466 LKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLK 525

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G   EA +   +M   G  PN  ++       N ++QG  +  D + A ++   M  + 
Sbjct: 526 EGLSDEAYDLFRKMEDDGFLPNSCSY-------NVMIQGFLQNQDSSTAIRLIDEMVGKR 578

Query: 403 ISVDSLTYSSLI 414
            SV+  T+  L+
Sbjct: 579 FSVNLSTFQMLL 590



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 152/307 (49%), Gaps = 8/307 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N+  +D A   F  M      P    +G  +    +  +      L  +M+    +  V 
Sbjct: 70  NNVCVDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVY 129

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +   LIN LC+   V+ ++ +  +M   G+ P+  T+++L++GLC  G   +A+EL   M
Sbjct: 130 SLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEM 189

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           + + H PN+++Y+T++NGLCK G    AV++  +M+  G KP+   Y  II   C     
Sbjct: 190 VKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLV 249

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            +A  FL EMV  GI PN  T+       N++V G C     N A +++  M  R +  +
Sbjct: 250 NDAMEFLSEMVERGIPPNVFTY-------NSIVHGFCNLGQLNEATRLFKEMVGRDVMPN 302

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           ++T++ L+   CK+G + ++  + + +   G  PD  T++A+M     +R M +A ++  
Sbjct: 303 TVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFE 362

Query: 467 LELMNKC 473
           + +   C
Sbjct: 363 IMIRKGC 369



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 4/280 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  V++A ++F++ T +   G   D ST++ ++           A+ + + + ++ C   
Sbjct: 316 EGMVSEARLVFETMTEK---GVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPG 372

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              +  +  GY +  R  +A  +  +M      P   +Y T++  L +  + K A   ++
Sbjct: 373 AHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFK 432

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   G  P + +  +L+   CK+ G +D A K+ + M  +   P+   Y  LI G+   
Sbjct: 433 EMCSYGPHPNLVTYVILLDGFCKH-GHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIA 491

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           GK+  AKELF ++      P + TYT +I GL +    +EA  LF +M   G  PN  +Y
Sbjct: 492 GKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSY 551

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           + ++ G  +   SS A+ L+  M+ KR   N+ T+  LL+
Sbjct: 552 NVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 11/211 (5%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED----IFLSICRGYGR 97
           Y      D  T+S ++  L      RP E L   + KE C          ++ +  G+ +
Sbjct: 400 YHKALNPDTVTYSTLMQGLCQLG--RPKEAL--NLFKEMCSYGPHPNLVTYVILLDGFCK 455

Query: 98  VHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
            H  LD A+++   MKE   EP    Y  ++  +    +L++A   +  +   G +P + 
Sbjct: 456 -HGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIR 514

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +  V+IK L K  G  D A+ +FR+M + G  P+S +Y  +I G  +      A  L  E
Sbjct: 515 TYTVMIKGLLK-EGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDE 573

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           M  K  S  + T+  L++   Q + + + MR
Sbjct: 574 MVGKRFSVNLSTFQMLLDLESQDEIISQFMR 604


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 219/411 (53%), Gaps = 10/411 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ MI    S  +F  A  LL+R  ++ C  +   +  I    GR  +  +A+R+ + M
Sbjct: 344 AYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM 403

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K     P   SY  ++ +L +  +L+ A +    M+E G+ P + ++N++I  LCK +  
Sbjct: 404 K-MDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCK-AQR 461

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  IF  + ++ CTPDS T+ +LI+GL R GK+ +A  L+++M     +P  V YTS
Sbjct: 462 LDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTS 521

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI    +    E+  ++++EM  +G  P++   ++ MD + K G   +   L + + ++ 
Sbjct: 522 LIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQG 581

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++ +YS L++GL K G  ++  ++   MK QGL  D   Y  +I  FC  GK  +A 
Sbjct: 582 LTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAY 641

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             L+EM   G+ P  +T+        +V+ GL K D  + A+ ++   +++++ ++ + Y
Sbjct: 642 QLLEEMKTKGLQPTVVTYG-------SVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVY 694

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SSLI  F K G I ++  I++EL+  G  P+  TW+ ++ AL    ++ +A
Sbjct: 695 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEA 745



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 202/415 (48%), Gaps = 9/415 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D+ TF  +I  L    +   A  L +++          ++ S+ R + +  R  D  +++
Sbjct: 480 DSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIY 539

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M   GC P        +  + +  +++     +  ++  G+ P V S ++LI  L K 
Sbjct: 540 KEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKG 599

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
             + D  +K+F EM  +G   D+  Y  +I+G C+ GK+ +A +L +EM+TK   PTVVT
Sbjct: 600 GFSKDT-YKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVT 658

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y S+I+GL +   ++EA  LFEE +SK V+ NV  YSSL+DG  K G   +A  +L+ ++
Sbjct: 659 YGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELM 718

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K   PN  T++ LL+ L K  ++ EA+     MK     P+   Y  +++  C + K+ 
Sbjct: 719 QKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFN 778

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
           +A  F  EM   G+ PN +T++       T++ GL +  +   A  ++   ++     DS
Sbjct: 779 KAFVFWQEMQKQGLKPNTITYT-------TMISGLARVGNVLEAKDLFERFKSSGGIPDS 831

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
             Y+++I           +  + +E  L GC     T   ++ AL     + QAA
Sbjct: 832 ACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQAA 886



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 209/433 (48%), Gaps = 12/433 (2%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V+ +IR  KDV  AL  F     E      H    ++ ++  +         E +L+ ++
Sbjct: 102 VVGVIRRLKDVRVALHYF--RWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMS 159

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
                 + +  + +   + +  +  +A  V + M++F   P   +Y T++  L   ++  
Sbjct: 160 MAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEAD 219

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                 R M+EIG +  V     LI    +  G +DAA  +  EM +     D   Y   
Sbjct: 220 PMLTLLRQMQEIGYEVTVHLFTTLICVFAR-EGRVDAALSLLDEMKSNSFNADLVLYNVC 278

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+   ++GK+  A + F E++++   P  VT+TS+I  LC+++ V+EA+ LFEE+ S   
Sbjct: 279 IDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKS 338

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P V+ Y++++ G    G  ++A  LL+    K   P+++ Y+ +L  L ++GK++EA+ 
Sbjct: 339 VPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALR 398

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           IL+ MK+    P+   Y  +I   C  G+ + A    D M   G+ PN +T        N
Sbjct: 399 ILEAMKMDA-APNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITV-------N 450

Query: 378 TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++  LCK    + A  ++L + ++  + DS+T+ SLI    + G ++ +  + ++++  
Sbjct: 451 IMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDS 510

Query: 437 GCLPDEGTWSAVM 449
           G  P+   +++++
Sbjct: 511 GQTPNAVVYTSLI 523



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 151/300 (50%), Gaps = 4/300 (1%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ K   +F+   A+   G   D  ++S++I  LV     +    L   + ++   +   
Sbjct: 566 EIEKGRALFEEIKAQ---GLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTR 622

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  +  G+ +  +   A ++ ++MK  G +PT  +Y +V+  L + ++L  A+  +   
Sbjct: 623 AYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 682

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +   +   V   + LI    K  G +D A+ I  E+  +G TP++YT+  L++ L +  +
Sbjct: 683 KSKAVDLNVVVYSSLIDGFGK-VGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEE 741

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           I EA   F+ M+   C P  VTY+ ++NGLC+ +   +A   ++EM+ +G++PN  TY++
Sbjct: 742 IDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTT 801

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ GL + G   +A +L +   S    P+   Y+ ++ GL    K  +A  + +  +L+G
Sbjct: 802 MISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKG 861



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/291 (19%), Positives = 113/291 (38%), Gaps = 43/291 (14%)

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           +P++Y    L+  + R   +   +++ +EM      P+  T   ++    +S+ + EA  
Sbjct: 131 SPEAYN--ALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFG 188

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           + E MR     P    Y++L+  L     +   + LL+ M    +   +  ++TL+    
Sbjct: 189 VIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFA 248

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           +EG++  A+ +LD MK      D  LY   I CF  +GK   A  F  E+   G+ P   
Sbjct: 249 REGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVP--- 305

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                                                 D +T++S+I   CK   + ++ 
Sbjct: 306 --------------------------------------DDVTFTSMIGVLCKAERVDEAV 327

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            + +EL  +  +P    ++ ++       K  +A  LL  +    C+ + +
Sbjct: 328 ELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVI 378


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 216/425 (50%), Gaps = 10/425 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           DVN A  +F+    +   G R +  +++ +I  L  A +      L  ++ ++ C  T  
Sbjct: 264 DVNSAYKVFNMMPNK---GCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVR 320

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  I        R L+ M +F++M+E  CEP   +Y  ++  + +E +L  + R    M
Sbjct: 321 TYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEM 380

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G+ P V + N LI+  C+  G ++AA +I   M +  C P+  TY  LI G  +   
Sbjct: 381 MEKGLVPSVVTYNALIRGYCE-EGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKH 439

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +++A  L  +M     +P++VTY SLI+  C++   + A +L + ++  G+ P+ +TYS 
Sbjct: 440 VHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSV 499

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            +D LCK     +A +L   +  K  + N V Y+ L++G CK GK+ EA+ +L+RM  + 
Sbjct: 500 FIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSED 559

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             P++  Y  +I   C  GK QE  + ++ M   G+ P   T+++ I       + L + 
Sbjct: 560 CLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIE------EMLREG 613

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           D + A +V+  M +     D  TY++ I  +C  G++ ++  ++  ++  G +PD  T++
Sbjct: 614 DFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYT 673

Query: 447 AVMTA 451
            +++A
Sbjct: 674 LLISA 678



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 246/522 (47%), Gaps = 63/522 (12%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVI-FDSATAEYANGFRHDNSTFSLMISKLVSANQF 66
           K    ++ + V  L     D+N  + + F ++      GF+H   + S ++  L+  N F
Sbjct: 77  KLIPNLSPSHVSSLFNNHPDLNPNIALQFFNSLPLIKPGFKHTVKSHSFLLKILIPNNLF 136

Query: 67  RPAE--------------------DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
              E                    D L ++N++  DI    F    R Y  +   L    
Sbjct: 137 GVGEKIRISMIKACVSVDDIRFLLDFLRQMNRDDNDIK---FKLSVRSYNELLMMLARFL 193

Query: 107 VFDKMKEFGCE-------PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           + D+MK    E       P   +  T++    +   +  A  +   + + G+ P   +  
Sbjct: 194 MIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYT 253

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            LI   C+N+  +++A+K+F  MPN+GC  +  +Y T+I+GLC  G+I E   LFK+M  
Sbjct: 254 SLILGYCRNND-VNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMRE 312

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
             C PTV TYT +I+ L  +    E M LF EMR +  EPNV TY+ ++D +CK     +
Sbjct: 313 DDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDE 372

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +  +L  M+ K   P++VTY+ L+ G C+EG+++ A+EIL  M+    +P+   Y ++I 
Sbjct: 373 SRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELIC 432

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWS--LHIR----------------------- 374
            F       +A   L +M+   +TP+ +T++  +H++                       
Sbjct: 433 GFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVP 492

Query: 375 ---IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
               ++  +  LCK+     A  ++ S++ + I  + + Y++LI   CK G I ++  ++
Sbjct: 493 DQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLL 552

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           + +  + CLP+  T+++++  +    K+++   L ++E M+K
Sbjct: 553 ERMHSEDCLPNSSTYNSLIYGVCKEGKVQEG--LSMVENMSK 592



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 205/438 (46%), Gaps = 14/438 (3%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           +  G   D+ T++ +I      N    A  + + +  + C   E  + +I  G     R 
Sbjct: 241 FQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRI 300

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            + + +F KM+E  C PT ++Y  ++  L   ++       +  MRE   +P V +  V+
Sbjct: 301 DEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVM 360

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           + A+CK    +D + +I  EM  +G  P   TY  LI G C  G+I  A E+   ME+  
Sbjct: 361 VDAMCKER-KLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNN 419

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P   TY  LI G  + K V +AM L  +M    + P++ TY+SL+   CK G    A 
Sbjct: 420 CRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAY 479

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +LL ++      P+  TYS  ++ LCK  +++EA ++ + +K +G+K +  +Y  +I   
Sbjct: 480 KLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGH 539

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  GK  EA + L+ M      PN  T+       N+++ G+CK         +  +M  
Sbjct: 540 CKAGKIDEAISLLERMHSEDCLPNSSTY-------NSLIYGVCKEGKVQEGLSMVENMSK 592

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +     TY+ LI    ++GD   + R+ +++V  G  PD  T++A +        +++
Sbjct: 593 MGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKE 652

Query: 461 AAELLLLELMNKCVEAEV 478
           A       +M + +EA V
Sbjct: 653 AE-----GMMARMIEAGV 665



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 156/319 (48%), Gaps = 1/319 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I       +   A ++L  +    C   E  +  +  G+ +      AM +  KM
Sbjct: 391 TYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKM 450

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E    P+  +Y +++ +  +      A++    ++E G+ P   + +V I  LCK S  
Sbjct: 451 LESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCK-SKR 509

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           M+ A  +F  +  +G   +   Y  LI+G C+ GKI EA  L + M ++ C P   TY S
Sbjct: 510 MEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNS 569

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI G+C+   V+E + + E M   GV+P V TY+ L++ + + G    A  +   M+S  
Sbjct: 570 LIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFG 629

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           H+P++ TY+  ++  C  G ++EA  ++ RM   G+ PD+  Y  +IS +  +G   +A 
Sbjct: 630 HKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAF 689

Query: 352 NFLDEMVLGGITPNRLTWS 370
           N L  M+  G  P+   W+
Sbjct: 690 NVLKRMLDAGCDPSHPIWN 708



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 138/296 (46%), Gaps = 1/296 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           +N  R +  T++ +I           A  LL ++ + K   +   + S+     +     
Sbjct: 417 SNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFD 476

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A ++ D +KE G  P   +Y   +  L +  +++ A   +  ++E GI+        LI
Sbjct: 477 SAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALI 536

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK +G +D A  +   M +  C P+S TY +LI G+C+ GK+ E   + + M     
Sbjct: 537 DGHCK-AGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGV 595

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PTV TYT LI  + +    + A R+F +M S G +P+V+TY++ +   C  G   +A  
Sbjct: 596 KPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEG 655

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           ++  MI     P+ +TY+ L++   + G   +A  +L RM   G  P   ++  +I
Sbjct: 656 MMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 120/254 (47%), Gaps = 8/254 (3%)

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           +V +Y  L+  L +   ++E  R++ EM +  + PN++T +++++   K G   +A   +
Sbjct: 178 SVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYV 237

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +      P+  TY++L+ G C+   +  A ++ + M  +G + +   Y  II   C+ 
Sbjct: 238 SKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEA 297

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSI 403
           G+  E  +   +M      P        +R +  ++  L   D N     ++  MR RS 
Sbjct: 298 GRIDEGISLFKKMREDDCYPT-------VRTYTVIIHALFGNDRNLEGMDLFNEMRERSC 350

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TY+ ++   CK+  + +S RI++E++  G +P   T++A++    +  ++  A E
Sbjct: 351 EPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALE 410

Query: 464 LLLLELMNKCVEAE 477
           +L L   N C   E
Sbjct: 411 ILGLMESNNCRPNE 424


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 235/481 (48%), Gaps = 52/481 (10%)

Query: 13  ITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           ++ A + +L++A    K V+KAL +F  A        +  +ST++ +I  L+   Q    
Sbjct: 160 VSPAVLSELVKALGRAKMVSKALSVFYQAKGRKC---KPTSSTYNSVILMLMQEGQHEKV 216

Query: 70  EDLLDRV-NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
            ++   + N+  C      + ++   Y ++ R   A+R+FD+MK+   +PT K Y T+L 
Sbjct: 217 HEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLG 276

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
           I  +  +++ A   +  M+  G  P V +   LIK L K +G +D A+  +++M   G T
Sbjct: 277 IYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGK-AGRVDEAYGFYKDMLRDGLT 335

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMR 247
           PD      L+N L ++G++ E   +F EM    C+PTVV+Y ++I  L +SK+ V E   
Sbjct: 336 PDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSS 395

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
            F++M++  V P+ FTYS L+DG CK     +A+ LL+ M  K   P    Y +L+N L 
Sbjct: 396 WFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALG 455

Query: 308 KE-----------------------------------GKLQEAVEILDRMKLQGLKPDAG 332
           K                                    GKL EAV++ + MK QG  PD  
Sbjct: 456 KAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVY 515

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRA 391
            Y  ++S     G   EA + L +M   G   +       I  HN ++ G  +T  P RA
Sbjct: 516 AYNALMSGMVKAGMINEANSLLRKMEENGCRAD-------INSHNIILNGFARTGVPRRA 568

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            +++ ++++  I  D +TY++L+ CF   G   ++AR++ E+   G   D  T+S+++ A
Sbjct: 569 IEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDA 628

Query: 452 L 452
           +
Sbjct: 629 V 629



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 226/495 (45%), Gaps = 28/495 (5%)

Query: 6   MFKWSTKITSA-QVLQL----------IRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW      A +VL+L          +  + ++N  +  F  A       F+HD ST+ 
Sbjct: 73  IFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKR--RNFQHDCSTYM 130

Query: 55  LMISKLVSANQFRPAEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
            +I  L  A  +      +  V +     ++  +   + +  GR      A+ VF + K 
Sbjct: 131 TLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKG 190

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTM 172
             C+PT  +Y +V+ +L++E Q +     Y  M  E    P   + + LI +  K  G  
Sbjct: 191 RKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEK-LGRN 249

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D+A ++F EM +    P    Y TL+    ++GK+ +A +LF+EM+   CSPTV TYT L
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I GL ++  V+EA   +++M   G+ P+V   ++LM+ L K G   +   +   M   R 
Sbjct: 310 IKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRC 369

Query: 293 RPNIVTYSTLLNGLCK-EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            P +V+Y+T++  L + +  + E     D+MK   + P    Y  +I  +C   + ++A 
Sbjct: 370 TPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKAL 429

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTY 410
             L+EM   G  P    +        +++  L K     A  +++  ++    +V S  Y
Sbjct: 430 LLLEEMDEKGFPPCPAAYC-------SLINALGKAKRYEAANELFKELKENFGNVSSRVY 482

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           + +I  F K G + ++  + +E+   G  PD   ++A+M+ +     + +A  LL     
Sbjct: 483 AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEE 542

Query: 471 NKCVEAEVDIQNQDV 485
           N C     DI + ++
Sbjct: 543 NGC---RADINSHNI 554


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 189/398 (47%), Gaps = 42/398 (10%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F++M      P+   +  +L  + +             M   GI P + +LN+LI
Sbjct: 51  DALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILI 110

Query: 163 KALCK----------------------------------NSGTMDAAFKIFREMPNRGCT 188
            + C                                     G +     +F +M   G  
Sbjct: 111 NSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQ 170

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  TYGTLINGLC++G    A  L + ME   C P VV YTS+I+ LC+ + V +A  L
Sbjct: 171 PNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNL 230

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EM  +G+ P++FTY+SL+  LC          LL  M++ +  PN+V +ST+++ LCK
Sbjct: 231 FSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCK 290

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EGK+ EA +++D M  +G++P+   Y  ++   C   +  EA    D MV  G  P+ ++
Sbjct: 291 EGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVS 350

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +S       T++ G CK     +A  ++  M  + +  +++TYS+L+   C  G +  + 
Sbjct: 351 YS-------TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAI 403

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  E+V  G +PD  ++  ++  L   R++ +A  LL
Sbjct: 404 ALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALL 441



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 185/392 (47%), Gaps = 44/392 (11%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M  FG  P   +   ++       +L  AF     + ++G QP +A+ N LI+ LC   
Sbjct: 93  QMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCV-E 151

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +     +F +M   G  P+  TYGTLINGLC++G    A  L + ME   C P VV Y
Sbjct: 152 GKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVY 211

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM--------------------- 268
           TS+I+ LC+ + V +A  LF EM  +G+ P++FTY+SL+                     
Sbjct: 212 TSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVN 271

Query: 269 --------------DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
                         D LCK G   +A +++ MMI +   PN+VTY+ L++G C   ++ E
Sbjct: 272 SKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDE 331

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           AV++ D M  +G  PD   Y  +I+ +C I + ++A    +EM    + PN +T+S    
Sbjct: 332 AVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYS---- 387

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              T++ GLC       A  ++  M  R    D ++Y  L+   CK   + ++  ++  +
Sbjct: 388 ---TLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAI 444

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
                 PD   ++ V+  +    ++  A +L 
Sbjct: 445 EGSNMDPDIQIYTIVIDGMCRAGELEAARDLF 476



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 217/435 (49%), Gaps = 10/435 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + + +TF+ +I  L    +      L D++  E        + ++  G  +V     A
Sbjct: 133 GHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAA 192

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M++  C+P    Y +++  L ++ Q+  AF  +  M   GI P + + N LI A
Sbjct: 193 IRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHA 252

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N         +  EM N    P+   + T+++ LC+ GK+ EA ++   M  +   P
Sbjct: 253 LC-NLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEP 311

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +L++G C    ++EA+++F+ M  KG  P+V +YS+L++G CK     +AM L 
Sbjct: 312 NVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLF 371

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   PN VTYSTL++GLC  G+LQ+A+ +   M  +G  PD   Y  ++   C  
Sbjct: 372 EEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKN 431

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
            +  EA   L  +    + P+       I+I+  V+ G+C+  +   A  ++ ++ ++ +
Sbjct: 432 RRLDEAIALLKAIEGSNMDPD-------IQIYTIVIDGMCRAGELEAARDLFSNLSSKGL 484

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TY+ +I   C++G + +++++  E+   G  P+  T++ +        +  +  +
Sbjct: 485 HPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQ 544

Query: 464 LLLLELMNKCVEAEV 478
            LL E++ +   A+V
Sbjct: 545 -LLQEMLARGFSADV 558



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 202/453 (44%), Gaps = 50/453 (11%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIR    E  + + L +FD    E   GF+ +  T+  +I+ L        A  LL  + 
Sbjct: 144 LIRGLCVEGKIGEVLHLFDKMIGE---GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSME 200

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY-------------- 123
           +  C     ++ SI     +  +   A  +F +M   G  P+  +Y              
Sbjct: 201 QGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWK 260

Query: 124 ---------------------ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
                                 TV+  L +E ++  A      M + G++P V + N L+
Sbjct: 261 HVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALM 320

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C  S  MD A K+F  M  +G  PD  +Y TLING C++ +I +A  LF+EM  K  
Sbjct: 321 DGHCLRS-EMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL 379

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VTY++L++GLC    +++A+ LF EM ++G  P+  +Y  L+D LCK     +A+ 
Sbjct: 380 IPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIA 439

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ +      P+I  Y+ +++G+C+ G+L+ A ++   +  +GL P+   Y  +I+  C
Sbjct: 440 LLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLC 499

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
             G   EA+    EM   G +PN  T+       N + +G  + +   R  Q+   M  R
Sbjct: 500 QQGLLAEASKLFGEMKRKGYSPNGCTY-------NLITRGFLRNNETLRGIQLLQEMLAR 552

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             S D  T + L+      G      +I+ E +
Sbjct: 553 GFSADVSTSTVLVEMLSDDGLDQSVKQILSEFL 585



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 166/333 (49%), Gaps = 9/333 (2%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N L  A   +  M  +   P +A    L+ ++ K          +  +M + G  P+ YT
Sbjct: 47  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMK-HYSTVLSLSHQMDSFGIPPNIYT 105

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
              LIN  C L ++  A  +  ++      P + T+ +LI GLC    + E + LF++M 
Sbjct: 106 LNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMI 165

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            +G +PNV TY +L++GLCK G +S A+ LL+ M     +P++V Y+++++ LCK+ ++ 
Sbjct: 166 GEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVT 225

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +A  +   M  QG+ P    Y  +I   C++ +++     L+EMV   I PN + +S   
Sbjct: 226 QAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFS--- 282

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
               TVV  LCK      A  V   M  R +  + +TY++L+   C + ++ ++ ++ D 
Sbjct: 283 ----TVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT 338

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +V  G  PD  ++S ++      +++ +A  L 
Sbjct: 339 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLF 371



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 8/299 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N  T+D A   F  M +    P    +  L+  + ++        L  +M++    P + 
Sbjct: 45  NFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIY 104

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T   LIN  C  + +  A  +  ++   G +PN+ T+++L+ GLC  G   + + L   M
Sbjct: 105 TLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKM 164

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           I +  +PN+VTY TL+NGLCK G    A+ +L  M+    +PD  +Y  II   C   + 
Sbjct: 165 IGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 224

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVD 406
            +A N   EM+  GI+P+  T+       N+++  LC     +     L+ M N  I  +
Sbjct: 225 TQAFNLFSEMIHQGISPSIFTY-------NSLIHALCNLCEWKHVTALLNEMVNSKIMPN 277

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + +S+++   CK+G + ++  +VD ++  G  P+  T++A+M     R +M +A ++ 
Sbjct: 278 VVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVF 336



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 136/275 (49%), Gaps = 9/275 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A   F  M      P++  +T L+  + + K     + L  +M S G+ PN++T + L+
Sbjct: 51  DALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILI 110

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           +  C       A  +L  ++   H+PNI T++TL+ GLC EGK+ E + + D+M  +G +
Sbjct: 111 NSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQ 170

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D 387
           P+   YG +I+  C +G    A   L  M  G   P+       + ++ +++  LCK   
Sbjct: 171 PNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPD-------VVVYTSIIDSLCKDRQ 223

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
             +AF ++  M ++ IS    TY+SLI   C   +      +++E+V    +P+   +S 
Sbjct: 224 VTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFST 283

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           V+ AL    K+ +A +++ + ++ + VE  V   N
Sbjct: 284 VVDALCKEGKVMEAHDVVDM-MIKRGVEPNVVTYN 317


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 219/469 (46%), Gaps = 54/469 (11%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F+     F  ++  LV  +    A  +++RV   +     D+ ++     G V      +
Sbjct: 115 FKESEFVFCAILDILVGNDLMHAAYWVMERVVSFEMHGVVDVLIA-----GHVX----CL 165

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            VFDKM   G  P  K+   +L +L +EN L  A   Y  M + GI+P V + N ++ + 
Sbjct: 166 LVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSY 225

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK  G +D A ++  EM  RGC P+  TY  L+NGL + G++ +AK L +EM     + +
Sbjct: 226 CK-EGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS 284

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK------------ 273
             TY  LING CQ     EA  L EEM ++   P + TY++LM GLCK            
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFS 344

Query: 274 -----------------------GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                                   GC S+A  L   +  +   P ++TY+TL++GLC  G
Sbjct: 345 DMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWG 404

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L  A+ +   M  QGL PD   Y  +++    +G    A  F +EM+  G+ P+R  + 
Sbjct: 405 YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAY- 463

Query: 371 LHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 NT + G  K  D + AF +   M       D +TY+  +   C++G+  ++  +
Sbjct: 464 ------NTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDL 517

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           ++ +V DG +PD  T+++++        +R+A E +  E+++K V   V
Sbjct: 518 LENMVSDGLIPDHVTYTSIINGFVKNGHLRKARE-VFNEMLSKGVAPSV 565



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 204/402 (50%), Gaps = 7/402 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           ++ T++++++ L    +   A+ L++ +     +++   +  +  G+ +    ++A  + 
Sbjct: 249 NDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLV 308

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M      PT  +Y T++  L +  Q+      +  M +    P + S N L+   C+ 
Sbjct: 309 EEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCR- 367

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G +  AF +F E+  R   P   TY TLI+GLC  G +  A  L KEM  +   P + T
Sbjct: 368 TGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFT 427

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT L+NG  +   V  A   F EM SKG++P+ F Y++ + G  K   +S A  + + M+
Sbjct: 428 YTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEML 487

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +    P+++TY+  ++ LC++G  +EA ++L+ M   GL PD   Y  II+ F   G  +
Sbjct: 488 AAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLR 547

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL 408
           +A    +EM+  G+ P+ +T+++ I  H        K   + AF  +  M  +S+  + +
Sbjct: 548 KAREVFNEMLSKGVAPSVVTYTVLIHAHAA------KQMLDLAFMYFSKMLEKSVPANVI 601

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           TY+++I   C    + ++ +  DE+   G LP++ +++ ++ 
Sbjct: 602 TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILIN 643



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 153/332 (46%), Gaps = 38/332 (11%)

Query: 80  KCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K   T DI  F S+  GY R     +A  +FD++K     PT  +Y T++  L     L 
Sbjct: 348 KSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLD 407

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A R  + M + G+ P + +  +L+   C   G +  A   F EM ++G  PD + Y T 
Sbjct: 408 AALRLKKEMTDQGLFPDIFTYTILVNG-CFKLGYVSMARGFFNEMLSKGLKPDRFAYNTR 466

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I G  ++     A  + +EM      P V+TY   ++ LCQ  + EEA  L E M S G+
Sbjct: 467 IVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGL 526

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP----------------------- 294
            P+  TY+S+++G  K G   +A E+   M+SK   P                       
Sbjct: 527 IPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFM 586

Query: 295 ------------NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
                       N++TY+ ++NGLC   ++ EA +  D M+ +G+ P+   Y  +I+  C
Sbjct: 587 YFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESC 646

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           ++G ++EA     EM+   I P+  T S+ ++
Sbjct: 647 NMGYWEEALRLYREMLDRKIQPDSFTHSVFLK 678



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 131/281 (46%), Gaps = 46/281 (16%)

Query: 75  RVNKEKCD-------ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           R+ KE  D        T  I ++ C   G V     A   F++M   G +P   +Y T +
Sbjct: 411 RLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSM---ARGFFNEMLSKGLKPDRFAYNTRI 467

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
              ++     +AF     M   G  P V + NV + ALC+  G  + A  +   M + G 
Sbjct: 468 VGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ-QGNFEEACDLLENMVSDGL 526

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT----------------- 230
            PD  TY ++ING  + G + +A+E+F EM +K  +P+VVTYT                 
Sbjct: 527 IPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFM 586

Query: 231 ------------------SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
                             ++INGLC ++ ++EA + F+EM  KG+ PN F+Y+ L++  C
Sbjct: 587 YFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESC 646

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             G   +A+ L + M+ ++ +P+  T+S  L  L ++ ++ 
Sbjct: 647 NMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVH 687


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 220/411 (53%), Gaps = 10/411 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ MI    SA +F  A  LL+R  ++ C  +   +  I    GR  +  +A+R+ D+M
Sbjct: 345 AYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM 404

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           ++    P   +Y  ++ +L +  +L+ A +    M+E G+ P + ++N++I  LCK +  
Sbjct: 405 RQ-DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCK-AQK 462

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  IF  + ++ C+PDS T+ +LI+GL R G++ +A  L+++M      P VV YTS
Sbjct: 463 LDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTS 522

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI    +    E+  ++++EM  +G  P++   +S MD + K G   +   L + + ++ 
Sbjct: 523 LIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQG 582

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++ +YS L++GL K G  +E  ++   MK QGL  D   Y  +I  FC  GK  +A 
Sbjct: 583 LVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAY 642

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             L+EM   G+ P  +T+        +VV GL K D  + A+ ++   ++  + ++ + Y
Sbjct: 643 QLLEEMKTKGLQPTVVTYG-------SVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIY 695

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SSLI  F K G I ++  I++EL+  G  P+  TW+ ++ AL    ++ +A
Sbjct: 696 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEA 746



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 203/415 (48%), Gaps = 9/415 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D+ TF  +I  L    +   A  L +++          ++ S+ + + +  R  D  +++
Sbjct: 481 DSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIY 540

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M   GC P      + +  + +  +++     +  ++  G+ P V S ++LI  L K 
Sbjct: 541 KEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVK- 599

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G     +K+F EM  +G   D   Y T+I+G C+ GK+ +A +L +EM+TK   PTVVT
Sbjct: 600 AGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVT 659

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y S+++GL +   ++EA  LFEE +S GV+ NV  YSSL+DG  K G   +A  +L+ ++
Sbjct: 660 YGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELM 719

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K   PN  T++ LL+ L K  ++ EA      MK     P+A  Y  +I+  C I K+ 
Sbjct: 720 QKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFN 779

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
           +A  F  EM   G+ PN +T++       T++ GL K  +   A  ++   +      DS
Sbjct: 780 KAFVFWQEMQKQGLKPNNITYT-------TMIAGLAKAGNVMEARGLFDRFKASGGVPDS 832

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
             Y+++I           +  + +E  L GC  +  T   ++ AL     + QAA
Sbjct: 833 ACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQAA 887



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 208/437 (47%), Gaps = 12/437 (2%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++ +++  KDVN A   F     E      H    ++  +  +         E +L+ ++
Sbjct: 103 IVGVMKRLKDVNVAFQYF--RWVERKTQQAHCPEVYNAFLMVMARTRNLDYLEQILEEMS 160

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
                ++  + + +   + + H+  +A  V + M++F   P   +Y T++  L   N+  
Sbjct: 161 VAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPD 220

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                +  M+EIG +  V     L++   +  G +DAA  +  EM +   T D   Y   
Sbjct: 221 PMLTLFHQMQEIGYEANVHLFTTLVRVFAR-EGRIDAALSLLDEMKSNSFTADLVLYNVC 279

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+   ++GK+  A + F EM+ +   P  VTYT+LI  LC+++ ++EA+ LFEE+     
Sbjct: 280 IDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRS 339

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P V+ Y++++ G    G   +A  LL+    K   P+++ Y+ +L  L ++GK++EA+ 
Sbjct: 340 VPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALR 399

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           I D M+ Q   P+   Y  +I   C  G+ + A    D M   G+ PN +T        N
Sbjct: 400 IHDEMR-QDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTV-------N 451

Query: 378 TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++  LCK    + A  ++L + ++  S DS T+ SLI    ++G +  +  + ++++  
Sbjct: 452 IMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDS 511

Query: 437 GCLPDEGTWSAVMTALW 453
             +P+   +++++   +
Sbjct: 512 DQIPNVVVYTSLIQNFF 528



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 174/367 (47%), Gaps = 11/367 (2%)

Query: 100 RPLDAM-RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           R LD + ++ ++M   G   +    + ++A  V+ ++LK AF     MR+   +P  ++ 
Sbjct: 147 RNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAY 206

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
             LI AL   +   D    +F +M   G   + + + TL+    R G+I  A  L  EM+
Sbjct: 207 TTLIGALSA-ANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMK 265

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           + + +  +V Y   I+   +   V+ A + F EM+++G+ P+  TY++L+  LCK     
Sbjct: 266 SNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLD 325

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A+EL + +   R  P +  Y+T++ G    GK  EA  +L+R K +G  P    Y  I+
Sbjct: 326 EAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCIL 385

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
           +C    GK +EA    DEM      PN  T+       N ++  LCK  +   A +V  +
Sbjct: 386 TCLGRKGKVEEALRIHDEMRQDA-APNLTTY-------NILIDMLCKAGELEAALKVQDT 437

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M+   +  + +T + +I   CK   + ++  I   L    C PD  T+ +++  L  R +
Sbjct: 438 MKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGR 497

Query: 458 MRQAAEL 464
           +  A  L
Sbjct: 498 VDDAYSL 504



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 148/345 (42%), Gaps = 31/345 (8%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSY---TYGTLINGLCRLGKIYEAKELFKEM 217
           +I  + K    ++ AF+ FR +  +  T  ++    Y   +  + R   +   +++ +EM
Sbjct: 102 VIVGVMKRLKDVNVAFQYFRWVERK--TQQAHCPEVYNAFLMVMARTRNLDYLEQILEEM 159

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                  +      L+    +S  ++EA  + E MR     P    Y++L+  L      
Sbjct: 160 SVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRP 219

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
              + L   M    +  N+  ++TL+    +EG++  A+ +LD MK      D  LY   
Sbjct: 220 DPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVC 279

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I CF  +GK   A  F  EM   G+ P+ +T++       T++  LCK    + A +++ 
Sbjct: 280 IDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYT-------TLIGVLCKARRLDEAVELFE 332

Query: 397 SMR-NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            +  NRS+      Y+++I  +   G   ++  +++     GC+P    ++ ++T L  +
Sbjct: 333 ELDLNRSVPC-VYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRK 391

Query: 456 RKMRQAAEL----------------LLLELMNKCVEAEVDIQNQD 484
            K+ +A  +                +L++++ K  E E  ++ QD
Sbjct: 392 GKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQD 436


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 218/437 (49%), Gaps = 9/437 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG+  D  T +  I       Q   A    D+V      + +  + ++  G  +V     
Sbjct: 257 NGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKA 316

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  +      +P    Y T++  + ++  +  AF  Y       I P V + N LI 
Sbjct: 317 ALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALIS 376

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C   G +  A  +F +M ++   PD YT+  L++G C+ G I EAK +   M  ++  
Sbjct: 377 GFCI-VGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIK 435

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY+SL++G C    V +A  +F  M  +GV  NV +Y+ +++G CK     +AM+L
Sbjct: 436 PDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKL 495

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M  K+  P+++TYS+L++GLCK G++  A+E++D M  +G +PD   Y  I+   C 
Sbjct: 496 FKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCK 555

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
                +A   L ++   GI P+  T+++       +V+GLC++     A +V+  +  + 
Sbjct: 556 KHHVDKAITLLTKLKGQGIRPDMNTYTI-------LVKGLCQSGKLEDARKVFEDLLVKG 608

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
            ++D   Y+ +I  FC KG   ++  ++ ++  +GC+PD  T+  ++ +L+++ +   A 
Sbjct: 609 YNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAE 668

Query: 463 ELLLLELMNKCVEAEVD 479
           +LL   +M   + A  D
Sbjct: 669 KLLREMIMRGLLVALTD 685



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 175/340 (51%), Gaps = 8/340 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K VN A   FD  + + +     D  T++ +IS      + + A DL +++  +  +I 
Sbjct: 346 DKHVNDA---FDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSK--NII 400

Query: 85  EDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            D+  F  +  G+ +     +A  V   M +   +P   +Y +++      N++  A   
Sbjct: 401 PDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESI 460

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +  M   G+   V S N++I   CK    +D A K+F+EM ++   PD  TY +LI+GLC
Sbjct: 461 FNTMSHRGVTANVQSYNIMINGFCK-IKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLC 519

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           + G+I  A EL  EM  +   P ++TY S+++ LC+   V++A+ L  +++ +G+ P++ 
Sbjct: 520 KSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMN 579

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY+ L+ GLC+ G    A ++ + ++ K +  ++  Y+ ++ G C +G   EA+ +L +M
Sbjct: 580 TYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKM 639

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           +  G  PDA  Y  II    +  +   A   L EM++ G+
Sbjct: 640 EENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGL 679


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 189/398 (47%), Gaps = 42/398 (10%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F++M      P+   +  +L  + +             M   GI P + +LN+LI
Sbjct: 42  DALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILI 101

Query: 163 KALCK----------------------------------NSGTMDAAFKIFREMPNRGCT 188
            + C                                     G +     +F +M   G  
Sbjct: 102 NSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQ 161

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  TYGTLINGLC++G    A  L + ME   C P VV YTS+I+ LC+ + V +A  L
Sbjct: 162 PNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNL 221

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EM  +G+ P++FTY+SL+  LC          LL  M++ +  PN+V +ST+++ LCK
Sbjct: 222 FSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCK 281

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EGK+ EA +++D M  +G++P+   Y  ++   C   +  EA    D MV  G  P+ ++
Sbjct: 282 EGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVS 341

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +S       T++ G CK     +A  ++  M  + +  +++TYS+L+   C  G +  + 
Sbjct: 342 YS-------TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAI 394

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  E+V  G +PD  ++  ++  L   R++ +A  LL
Sbjct: 395 ALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALL 432



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 185/392 (47%), Gaps = 44/392 (11%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M  FG  P   +   ++       +L  AF     + ++G QP +A+ N LI+ LC   
Sbjct: 84  QMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCV-E 142

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +     +F +M   G  P+  TYGTLINGLC++G    A  L + ME   C P VV Y
Sbjct: 143 GKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVY 202

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM--------------------- 268
           TS+I+ LC+ + V +A  LF EM  +G+ P++FTY+SL+                     
Sbjct: 203 TSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVN 262

Query: 269 --------------DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
                         D LCK G   +A +++ MMI +   PN+VTY+ L++G C   ++ E
Sbjct: 263 SKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDE 322

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           AV++ D M  +G  PD   Y  +I+ +C I + ++A    +EM    + PN +T+S    
Sbjct: 323 AVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYS---- 378

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              T++ GLC       A  ++  M  R    D ++Y  L+   CK   + ++  ++  +
Sbjct: 379 ---TLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAI 435

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
                 PD   ++ V+  +    ++  A +L 
Sbjct: 436 EGSNMDPDIQIYTIVIDGMCRAGELEAARDLF 467



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 217/435 (49%), Gaps = 10/435 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + + +TF+ +I  L    +      L D++  E        + ++  G  +V     A
Sbjct: 124 GHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAA 183

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M++  C+P    Y +++  L ++ Q+  AF  +  M   GI P + + N LI A
Sbjct: 184 IRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHA 243

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N         +  EM N    P+   + T+++ LC+ GK+ EA ++   M  +   P
Sbjct: 244 LC-NLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEP 302

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +L++G C    ++EA+++F+ M  KG  P+V +YS+L++G CK     +AM L 
Sbjct: 303 NVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLF 362

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   PN VTYSTL++GLC  G+LQ+A+ +   M  +G  PD   Y  ++   C  
Sbjct: 363 EEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKN 422

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
            +  EA   L  +    + P+       I+I+  V+ G+C+  +   A  ++ ++ ++ +
Sbjct: 423 RRLDEAIALLKAIEGSNMDPD-------IQIYTIVIDGMCRAGELEAARDLFSNLSSKGL 475

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TY+ +I   C++G + +++++  E+   G  P+  T++ +        +  +  +
Sbjct: 476 HPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQ 535

Query: 464 LLLLELMNKCVEAEV 478
            LL E++ +   A+V
Sbjct: 536 -LLQEMLARGFSADV 549



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 202/453 (44%), Gaps = 50/453 (11%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIR    E  + + L +FD    E   GF+ +  T+  +I+ L        A  LL  + 
Sbjct: 135 LIRGLCVEGKIGEVLHLFDKMIGE---GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSME 191

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY-------------- 123
           +  C     ++ SI     +  +   A  +F +M   G  P+  +Y              
Sbjct: 192 QGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWK 251

Query: 124 ---------------------ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
                                 TV+  L +E ++  A      M + G++P V + N L+
Sbjct: 252 HVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALM 311

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C  S  MD A K+F  M  +G  PD  +Y TLING C++ +I +A  LF+EM  K  
Sbjct: 312 DGHCLRS-EMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL 370

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VTY++L++GLC    +++A+ LF EM ++G  P+  +Y  L+D LCK     +A+ 
Sbjct: 371 IPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIA 430

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ +      P+I  Y+ +++G+C+ G+L+ A ++   +  +GL P+   Y  +I+  C
Sbjct: 431 LLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLC 490

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
             G   EA+    EM   G +PN  T+       N + +G  + +   R  Q+   M  R
Sbjct: 491 QQGLLAEASKLFGEMKRKGYSPNGCTY-------NLITRGFLRNNETLRGIQLLQEMLAR 543

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             S D  T + L+      G      +I+ E +
Sbjct: 544 GFSADVSTSTVLVEMLSDDGLDQSVKQILSEFL 576



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 166/333 (49%), Gaps = 9/333 (2%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N L  A   +  M  +   P +A    L+ ++ K          +  +M + G  P+ YT
Sbjct: 38  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMK-HYSTVLSLSHQMDSFGIPPNIYT 96

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
              LIN  C L ++  A  +  ++      P + T+ +LI GLC    + E + LF++M 
Sbjct: 97  LNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMI 156

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            +G +PNV TY +L++GLCK G +S A+ LL+ M     +P++V Y+++++ LCK+ ++ 
Sbjct: 157 GEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVT 216

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +A  +   M  QG+ P    Y  +I   C++ +++     L+EMV   I PN + +S   
Sbjct: 217 QAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFS--- 273

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
               TVV  LCK      A  V   M  R +  + +TY++L+   C + ++ ++ ++ D 
Sbjct: 274 ----TVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT 329

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +V  G  PD  ++S ++      +++ +A  L 
Sbjct: 330 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLF 362



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 8/299 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N  T+D A   F  M +    P    +  L+  + ++        L  +M++    P + 
Sbjct: 36  NFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIY 95

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T   LIN  C  + +  A  +  ++   G +PN+ T+++L+ GLC  G   + + L   M
Sbjct: 96  TLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKM 155

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           I +  +PN+VTY TL+NGLCK G    A+ +L  M+    +PD  +Y  II   C   + 
Sbjct: 156 IGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 215

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVD 406
            +A N   EM+  GI+P+  T+       N+++  LC     +     L+ M N  I  +
Sbjct: 216 TQAFNLFSEMIHQGISPSIFTY-------NSLIHALCNLCEWKHVTALLNEMVNSKIMPN 268

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + +S+++   CK+G + ++  +VD ++  G  P+  T++A+M     R +M +A ++ 
Sbjct: 269 VVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVF 327



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 136/275 (49%), Gaps = 9/275 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A   F  M      P++  +T L+  + + K     + L  +M S G+ PN++T + L+
Sbjct: 42  DALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILI 101

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           +  C       A  +L  ++   H+PNI T++TL+ GLC EGK+ E + + D+M  +G +
Sbjct: 102 NSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQ 161

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D 387
           P+   YG +I+  C +G    A   L  M  G   P+       + ++ +++  LCK   
Sbjct: 162 PNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPD-------VVVYTSIIDSLCKDRQ 214

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
             +AF ++  M ++ IS    TY+SLI   C   +      +++E+V    +P+   +S 
Sbjct: 215 VTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFST 274

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           V+ AL    K+ +A +++ + ++ + VE  V   N
Sbjct: 275 VVDALCKEGKVMEAHDVVDM-MIKRGVEPNVVTYN 308


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 202/405 (49%), Gaps = 11/405 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  +++ +I  L  A +   A +L   +++    +    + ++ +G     R  + 
Sbjct: 40  GFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHM----YAALVKGLCNAERGEEG 95

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  +MKE G  P+ ++Y  V+     E + K A    + M E G+ PCV +   +I A
Sbjct: 96  LLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA 155

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M  A ++   M  RGC P+ +TY  L+ G C  GK+++A  L  +M     +P
Sbjct: 156 YCK-EGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNP 214

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY  LI G C    +E A RL   M   G+  + +TY++L++ LCK G + QA  L 
Sbjct: 215 DAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF 274

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             + ++  +PN VT+++L+NGLCK GK   A + L++M   G  PD   Y   I   C +
Sbjct: 275 DSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKM 334

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
              QE  +F+ EM+   + P+ + ++  I IH      L + +     + +  M +   +
Sbjct: 335 KGSQEGLSFIGEMLQKDVKPSTVNYT--IVIHKL----LKERNYGLVARTWGEMVSSGCN 388

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++ +  +C +G ++++  ++ E+  +G   D   ++ +M
Sbjct: 389 PDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 433



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 175/332 (52%), Gaps = 34/332 (10%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G +P   + N LI   C+ +  +D A  +F +MP RG   D  +Y TLI GLC  G+I E
Sbjct: 5   GWRPDAYTFNSLIVGYCR-TNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDE 63

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A ELF EM+     P +  Y +L+ GLC ++  EE + +   M+  G  P+   Y++++D
Sbjct: 64  AVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVD 119

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
             C+   + +A E+LQ M  K   P +VT + ++N  CKEG++ +A+ +L+ MKL+G KP
Sbjct: 120 FRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKP 179

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--------------- 374
           +   Y  ++  FC+ GK  +A   L++M   G+ P+ +T++L IR               
Sbjct: 180 NVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLL 239

Query: 375 -------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
                         +N ++  LCK    ++A  ++ S+  R I  +++T++SLI   CK 
Sbjct: 240 RLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKS 299

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           G    + + ++++V  GC PD  T+S+ +  L
Sbjct: 300 GKADIAWKFLEKMVSAGCTPDTYTYSSFIEHL 331



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 206/452 (45%), Gaps = 47/452 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+R     ++ ++       + + AE++L  + ++          ++   Y +  R  DA
Sbjct: 106 GWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDA 165

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +RV + MK  GC+P   +Y  ++     E ++  A      MR  G+ P   + N+LI+ 
Sbjct: 166 LRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRG 225

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C + G +++AF++ R M   G   D YTY  LIN LC+ G+  +A  LF  +ET+   P
Sbjct: 226 QCID-GHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKP 284

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM--- 281
             VT+ SLINGLC+S   + A +  E+M S G  P+ +TYSS ++ LCK   S + +   
Sbjct: 285 NAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFI 344

Query: 282 -ELLQM-------------------------------MISKRHRPNIVTYSTLLNGLCKE 309
            E+LQ                                M+S    P++VTY+T +   C E
Sbjct: 345 GEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIE 404

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+L EA  +L  M   G+  D   Y  ++     IG+   A + L +M      PN+ T+
Sbjct: 405 GRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTY 464

Query: 370 SLHIR--IHNTVVQGLCKTDP---------NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            + +R  +   +V+ +    P            F ++  M+      +S TYSS++  F 
Sbjct: 465 FILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFS 524

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           + G   ++  +V  +  D    +E  ++A++T
Sbjct: 525 EDGRTEEATSLVSLMKEDSISLNEDIYTALVT 556



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 196/415 (47%), Gaps = 48/415 (11%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F S+  GY R ++   A  +FDKM   G      SY T++  L E  ++  A   +  M 
Sbjct: 13  FNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD 72

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
               QP +     L+K LC N+   +    + R M   G  P +  Y  +++  CR  K 
Sbjct: 73  ----QPDMHMYAALVKGLC-NAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKA 127

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA+E+ +EM  K  +P VVT T++IN  C+   + +A+R+ E M+ +G +PNV+TY++L
Sbjct: 128 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNAL 187

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G C  G   +AM LL  M +    P+ VTY+ L+ G C +G ++ A  +L  M+  GL
Sbjct: 188 VQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGL 247

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT- 386
             D   Y  +I+  C  G+  +A +  D +   GI PN +T+       N+++ GLCK+ 
Sbjct: 248 IADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTF-------NSLINGLCKSG 300

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK-KGD----------------------- 422
             + A++    M +   + D+ TYSS I   CK KG                        
Sbjct: 301 KADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYT 360

Query: 423 --IHK---------SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
             IHK          AR   E+V  GC PD  T++  M A     ++ +A  +L+
Sbjct: 361 IVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLM 415



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/431 (22%), Positives = 182/431 (42%), Gaps = 26/431 (6%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            +G   D  T++ +I+ L    +   A  L D +           F S+  G  +  +  
Sbjct: 244 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 303

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A +  +KM   GC P   +Y + +  L +    +    F   M +  ++P   +  ++I
Sbjct: 304 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 363

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K       A + + EM + GC PD  TY T +   C  G++ EA+ +  EM     
Sbjct: 364 HKLLKERNYGLVA-RTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV 422

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM-------------- 268
           +   + Y +L++G       + A+ + ++M S    PN FTY  L+              
Sbjct: 423 TVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLP 482

Query: 269 ---DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
               G+ K    +    L  +M      PN  TYS++L G  ++G+ +EA  ++  MK  
Sbjct: 483 LTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKED 542

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-C 384
            +  +  +Y  +++CFC   +Y +A   +  M+  G  P  ++       +  ++ GL C
Sbjct: 543 SISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMS-------YQHLLSGLIC 595

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +   ++A +++++ R +  S D + +  +I    KKG    S  ++  L    C P   T
Sbjct: 596 EGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQT 655

Query: 445 WSAVMTALWDR 455
           ++ +   L DR
Sbjct: 656 YAMLTEELPDR 666


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 204/392 (52%), Gaps = 15/392 (3%)

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILVEENQLKLAFRF 142
           TED  ++    + R      A++ F +  + GC +P  + Y  +L  L+ EN +      
Sbjct: 32  TEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPV 91

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           Y +MR+ G+ P V + N+LI+ALC+N   +DAA K+  EM  +GC PD  ++GT+++G+C
Sbjct: 92  YDNMRKAGVDPNVYTYNLLIRALCQND-RVDAARKMLDEMSRKGCHPDEVSHGTIVSGMC 150

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           +LG++ EA+    E       P   +Y ++++ LC    + E   +  EM  +G++PNV 
Sbjct: 151 KLGRVEEARGFLAET-----VPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVV 205

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY++++D  CK      A  +L  M+S    PN++T++ L+ G  ++GK+ +A+ +   M
Sbjct: 206 TYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWM 265

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G  P    Y  +I   C IG  + A +F + M    + PN  T+S       T+V G
Sbjct: 266 VDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYS-------TLVDG 318

Query: 383 LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
                D + A  ++  M++     + + Y+++I   CKK    ++  ++D++++D C P+
Sbjct: 319 FSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPN 378

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             T++ ++  L D  ++ +A  +      N C
Sbjct: 379 TVTFNTLIGRLCDCGRVGRALNVFHGMRRNGC 410



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 200/417 (47%), Gaps = 18/417 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++L+I  L   ++   A  +LD ++++ C   E    +I  G  ++ R        ++ 
Sbjct: 106 TYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGR-------VEEA 158

Query: 112 KEFGCEPTP--KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           + F  E  P   SY  V+  L  E ++   F     M + G+QP V +   ++ A CK +
Sbjct: 159 RGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCK-A 217

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             +  A  I   M + GCTP+  T+  L+ G    GK+++A  ++  M  +  +P+ ++Y
Sbjct: 218 RELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISY 277

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             LI GLC    ++ A+  F  M+   + PN  TYS+L+DG    G    AM +   M S
Sbjct: 278 NVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKS 337

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              +PN+V Y+ +++ LCK+    +A  ++D+M +    P+   +  +I   CD G+   
Sbjct: 338 SGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGR 397

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSL 408
           A N    M   G  PN        R +N ++ GL +   ++ AF + + M N    +  +
Sbjct: 398 ALNVFHGMRRNGCHPND-------RTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLV 450

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TY+++I C C+      +  ++  +++ G  PD  T++A++ A     K+  AA LL
Sbjct: 451 TYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLL 507



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 192/423 (45%), Gaps = 48/423 (11%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           +F         G + +  T++ ++     A + R A  +L R+    C      F ++ +
Sbjct: 188 VFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVK 247

Query: 94  GY---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           G+   G+VH   DA+ ++  M + G  P+  SY  ++  L     LK A  F+  M+   
Sbjct: 248 GFFEDGKVH---DALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNA 304

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           + P   + + L+     N+G +D A  I+ EM + GC P+   Y  +I+ LC+     +A
Sbjct: 305 LLPNATTYSTLVDGF-SNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQA 363

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           + L  +M    C P  VT+ +LI  LC    V  A+ +F  MR  G  PN  TY+ L+ G
Sbjct: 364 ESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHG 423

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           L + G    A  ++  M++     ++VTY+T++N LC+    + A+ +L RM +QG++PD
Sbjct: 424 LFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPD 483

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR 390
           A  +  II  +C  GK   AA  L +M                   N V           
Sbjct: 484 AFTFNAIIHAYCKEGKVSIAACLLGQM-------------------NAV----------- 513

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
                      +   + + Y+ LI+  C +G +  +   + +++ +G  P+E TW+ ++ 
Sbjct: 514 -----------NCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVR 562

Query: 451 ALW 453
           A++
Sbjct: 563 AIF 565



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 155/367 (42%), Gaps = 64/367 (17%)

Query: 169 SGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC-SPT 225
           +G +D      +EM  RG  CT D+      I    R G    A + F       C  P 
Sbjct: 11  AGDVDGVQYALQEMRLRGVACTEDALV--AAIGAFARAGSADRALKTFYRASDLGCRDPG 68

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           V  Y  L++ L +   V   + +++ MR  GV+PNV+TY+ L+  LC+      A ++L 
Sbjct: 69  VRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLD 128

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEA------------------------------ 315
            M  K   P+ V++ T+++G+CK G+++EA                              
Sbjct: 129 EMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMWEV 188

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT------- 368
             +++ M  +GL+P+   Y  I+  FC   + + A   L  MV  G TPN LT       
Sbjct: 189 FSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKG 248

Query: 369 ---------------------WSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVD 406
                                W+     +N +++GL C  D   A   + SM+  ++  +
Sbjct: 249 FFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPN 308

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           + TYS+L+  F   GD+  +  I +E+   GC P+   ++ ++  L  +    QA  L+ 
Sbjct: 309 ATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLID 368

Query: 467 LELMNKC 473
             LM+ C
Sbjct: 369 KMLMDNC 375


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 219/469 (46%), Gaps = 54/469 (11%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F+     F  ++  LV  +    A  +++RV   +     D+ ++     G V      +
Sbjct: 115 FKESEFVFCAILDILVGNDLMHAAYWVMERVVSFEMHGVVDVLIA-----GHV----XCL 165

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            VFDKM   G  P  K+   +L +L +EN L  A   Y  M + GI+P V + N ++ + 
Sbjct: 166 LVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSY 225

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK  G +D A ++  EM  RGC P+  TY  L+NGL + G++ +AK L +EM     + +
Sbjct: 226 CK-EGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS 284

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK------------ 273
             TY  LING CQ     EA  L EEM ++   P + TY++LM GLCK            
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFS 344

Query: 274 -----------------------GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                                   GC S+A  L   +  +   P ++TY+TL++GLC  G
Sbjct: 345 DMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWG 404

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L  A+ +   M  QGL PD   Y  +++    +G    A  F +EM+  G+ P+R  + 
Sbjct: 405 YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAY- 463

Query: 371 LHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 NT + G  K  D + AF +   M       D +TY+  +   C++G+  ++  +
Sbjct: 464 ------NTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDL 517

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           ++ +V DG +PD  T+++++        +R+A E +  E+++K V   V
Sbjct: 518 LENMVSDGLIPDHVTYTSIINGFVKNGHLRKARE-VFNEMLSKGVAPSV 565



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 204/402 (50%), Gaps = 7/402 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           ++ T++++++ L    +   A+ L++ +     +++   +  +  G+ +    ++A  + 
Sbjct: 249 NDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLV 308

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M      PT  +Y T++  L +  Q+      +  M +    P + S N L+   C+ 
Sbjct: 309 EEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCR- 367

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G +  AF +F E+  R   P   TY TLI+GLC  G +  A  L KEM  +   P + T
Sbjct: 368 TGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFT 427

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT L+NG  +   V  A   F EM SKG++P+ F Y++ + G  K   +S A  + + M+
Sbjct: 428 YTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEML 487

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +    P+++TY+  ++ LC++G  +EA ++L+ M   GL PD   Y  II+ F   G  +
Sbjct: 488 AAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLR 547

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL 408
           +A    +EM+  G+ P+ +T+++ I  H        K   + AF  +  M  +S+  + +
Sbjct: 548 KAREVFNEMLSKGVAPSVVTYTVLIHAHAA------KQMLDLAFMYFSKMLEKSVPANVI 601

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           TY+++I   C    + ++ +  DE+   G LP++ +++ ++ 
Sbjct: 602 TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILIN 643



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 153/332 (46%), Gaps = 38/332 (11%)

Query: 80  KCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K   T DI  F S+  GY R     +A  +FD++K     PT  +Y T++  L     L 
Sbjct: 348 KSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLD 407

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A R  + M + G+ P + +  +L+   C   G +  A   F EM ++G  PD + Y T 
Sbjct: 408 AALRLKKEMTDQGLFPDIFTYTILVNG-CFKLGYVSMARGFFNEMLSKGLKPDRFAYNTR 466

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I G  ++     A  + +EM      P V+TY   ++ LCQ  + EEA  L E M S G+
Sbjct: 467 IVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGL 526

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP----------------------- 294
            P+  TY+S+++G  K G   +A E+   M+SK   P                       
Sbjct: 527 IPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFM 586

Query: 295 ------------NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
                       N++TY+ ++NGLC   ++ EA +  D M+ +G+ P+   Y  +I+  C
Sbjct: 587 YFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESC 646

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           ++G ++EA     EM+   I P+  T S+ ++
Sbjct: 647 NMGYWEEALRLYREMLDRKIQPDSFTHSVFLK 678



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 142/304 (46%), Gaps = 53/304 (17%)

Query: 75  RVNKEKCD-------ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           R+ KE  D        T  I ++ C   G V     A   F++M   G +P   +Y T +
Sbjct: 411 RLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSM---ARGFFNEMLSKGLKPDRFAYNTRI 467

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
              ++     +AF     M   G  P V + NV + ALC+  G  + A  +   M + G 
Sbjct: 468 VGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ-QGNFEEACDLLENMVSDGL 526

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT----------------- 230
            PD  TY ++ING  + G + +A+E+F EM +K  +P+VVTYT                 
Sbjct: 527 IPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFM 586

Query: 231 ------------------SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
                             ++INGLC ++ ++EA + F+EM  KG+ PN F+Y+ L++  C
Sbjct: 587 YFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESC 646

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ--EAVEIL-----DRMKLQ 325
             G   +A+ L + M+ ++ +P+  T+S  L  L ++ ++   + VE L     D + ++
Sbjct: 647 NMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVHAVQCVESLIQNVEDNINVR 706

Query: 326 GLKP 329
            L+P
Sbjct: 707 LLRP 710


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 233/465 (50%), Gaps = 19/465 (4%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           EK +++A  + + A      G   D  T+++ I  L  A +   A  LL +++++KC  T
Sbjct: 20  EKRLDEAFSVLERAVRA---GCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPT 76

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  R  +AM V ++M E G  PT K+Y  V+  L +  +++ A R + 
Sbjct: 77  TVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFV 136

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCTPDSYTYGTLING 200
            M   G +P       LIK LCK SG  + A+ +++E   R       PD  TY +LI+G
Sbjct: 137 DMLGNGCRPDAFVYTALIKGLCK-SGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDG 195

Query: 201 LCRLGKIYEAKELF-KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           LC+ G+I EA+++F  E   +   P  VTYTS+I+GLC+   VEE    F EMR++G EP
Sbjct: 196 LCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEP 255

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +  TY++L+DG  K     +A  + + M+      + VTY+ +L+GLCK G++ EA    
Sbjct: 256 DAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATF 315

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
             M+ +G       Y  ++  FC  G    A      M+  G  PN +++       N +
Sbjct: 316 LAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSY-------NII 368

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD-IHKSARIVDELVLDG 437
           ++GLC+     +A+  +  +  R +  D  T+++ +   C++ D +     + + +V  G
Sbjct: 369 IRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQG 428

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
             P+  ++S +M  +     +  A E +  E++++ V  +V + N
Sbjct: 429 TSPNLHSYSILMDGICRAGGLEVALE-IFREMVSRGVAPDVVVFN 472



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 192/380 (50%), Gaps = 14/380 (3%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  +  G  R  R  +A  V ++    GCEP   +Y   +  L +  ++  AF+  + M 
Sbjct: 10  FTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMD 69

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E    P   +   L+  L K +G +D A  +  +M  +G +P   TY  +I+GL + G++
Sbjct: 70  EKKCLPTTVTYTALVDGLLK-AGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRV 128

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK----GVEPNVFT 263
            EA+ +F +M    C P    YT+LI GLC+S   EEA  L++E  ++       P+V T
Sbjct: 129 EEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVT 188

Query: 264 YSSLMDGLCKGGCSSQAMELL-QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           Y+SL+DGLCK G   +A ++     + +   P+ VTY+++++GLCK G+++E  E    M
Sbjct: 189 YTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 248

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           + +G +PDA  Y  +I  F       +A     +M+  G   + +T+       N ++ G
Sbjct: 249 RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTY-------NIILDG 301

Query: 383 LCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LCK      A+  +L+M  R      +TYS+L+  FC +G++  +  +   ++  GC P+
Sbjct: 302 LCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPN 361

Query: 442 EGTWSAVMTALWDRRKMRQA 461
             +++ ++  L    K+ +A
Sbjct: 362 LVSYNIIIRGLCRAGKLAKA 381



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 177/375 (47%), Gaps = 45/375 (12%)

Query: 43  ANGFRH------DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI-FLSICRGY 95
           AN  +H      D  T++ +I  L  A +   A  + D    E+  I + + + SI  G 
Sbjct: 173 ANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGL 232

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
            ++ R  +    F +M+  G EP   +Y  ++   ++   +  A R YR M + G     
Sbjct: 233 CKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVST 292

Query: 156 ASLNVLIKALCK----------------------------------NSGTMDAAFKIFRE 181
            + N+++  LCK                                  + G + AA ++FR 
Sbjct: 293 VTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRR 352

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS-K 240
           M +RGC P+  +Y  +I GLCR GK+ +A   F+++  +   P V T+ + ++GLCQ   
Sbjct: 353 MLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLD 412

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
           +V + + LFE M S+G  PN+ +YS LMDG+C+ G    A+E+ + M+S+   P++V ++
Sbjct: 413 TVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFN 472

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL+  LC  G++ EA+E+   ++ +   PDA  Y  ++       + +EA      M L 
Sbjct: 473 TLIRWLCIAGRVDEALEVFRELERRS-APDAWSYWSLLDGLSRCERMEEARLLSFHMKLQ 531

Query: 361 GITPNRLTWSLHIRI 375
           G  P    + L +R 
Sbjct: 532 GCAPRH--YDLTVRF 544



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 158/333 (47%), Gaps = 48/333 (14%)

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           C+PD   +  +INGLCR  ++ EA  + +      C P  VTY   I+GLC+++ V++A 
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
           +L ++M  K   P   TY++L+DGL K G   +AM +L+ M+ K + P + TY+ +++GL
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA------AN-------- 352
            K G+++EA  I   M   G +PDA +Y  +I   C  GK +EA      AN        
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATA 182

Query: 353 --------------------------FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
                                     F DE V  G  P+ +T++       +++ GLCK 
Sbjct: 183 VPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYT-------SIIDGLCKL 235

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                  + +  MRNR    D++TY++LI  F K   I K+ R+  +++  G +    T+
Sbjct: 236 GRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTY 295

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           + ++  L    ++ +A    L      CV   V
Sbjct: 296 NIILDGLCKAGRVAEAYATFLAMEERGCVATVV 328


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 192/365 (52%), Gaps = 24/365 (6%)

Query: 117 EPTPK--SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
            PTP    +  +L  LV+ N    A   +R M   GI   + +LN+LI    +  G    
Sbjct: 55  NPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQ-LGQNPL 113

Query: 175 AFKIFREMPNRGCTPDSYT-------------YGTLINGLCRLGKIYEAKELFKEMETKA 221
           +F +F  +  +G  P+  T             YGTLINGLC++G+   A +L + ++ K 
Sbjct: 114 SFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKL 173

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VV Y ++I+ +C+ K V EA  L+ EM S+G+ P+V TYS+L+ G    G    A+
Sbjct: 174 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAI 233

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +L   MI +  +P++ T++ L++G CK+GK++E   +   M  QG+KP+   Y  ++  +
Sbjct: 234 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGY 293

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C + +  +A +  + M  GG+ P+  ++       N ++ G CK    + A  ++  M  
Sbjct: 294 CLVKQVNKANSIFNTMAQGGVNPDTQSY-------NIMINGFCKIKKVDEAMNLFKKMHC 346

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           ++I  + +TY+SLI   CK G I  + ++VDE+   G  PD  T+S+++ AL    ++ +
Sbjct: 347 KNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDK 406

Query: 461 AAELL 465
           A  LL
Sbjct: 407 AIALL 411



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 183/353 (51%), Gaps = 17/353 (4%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           SY T++  L +  Q + A +  R +    +QP V   N +I ++CK    ++ AF ++ E
Sbjct: 145 SYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCK-VKLVNEAFDLYSE 203

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M + G +PD  TY  LI+G   +GK+ +A +LF +M  +   P V T+  L++G C+   
Sbjct: 204 MVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK 263

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           ++E   +F  M  +G++PNV TY SLMDG C     ++A  +   M      P+  +Y+ 
Sbjct: 264 MKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNI 323

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           ++NG CK  K+ EA+ +  +M  + + P+   Y  +I   C  GK   A   +DEM   G
Sbjct: 324 MINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRG 383

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAF--------QVYLSMRNRSISVDSLTYSS 412
           + P+ +T+S       +++  LCK    ++A         QV+  +  +  ++D   Y+ 
Sbjct: 384 VPPDIITYS-------SILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTV 436

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I  FC KG  +++  ++ ++  +G +PD  T+  ++ +L+ + +   A +LL
Sbjct: 437 MIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLL 489



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 175/346 (50%), Gaps = 16/346 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           ++  +I+ L    Q R A  LL RV+ +       ++ +I     +V    +A  ++ +M
Sbjct: 145 SYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 204

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P   +Y  +++      +LK A   +  M    I+P V + N+L+   CK+ G 
Sbjct: 205 VSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKD-GK 263

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           M     +F  M  +G  P+  TY +L++G C + ++ +A  +F  M     +P   +Y  
Sbjct: 264 MKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNI 323

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +ING C+ K V+EAM LF++M  K + PNV TY+SL+DGLCK G  S A++L+  M  + 
Sbjct: 324 MINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRG 383

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK--------LQGLKPDAGLYGKIISCFCD 343
             P+I+TYS++L+ LCK  ++ +A+ +L ++K        ++G   D   Y  +I  FC 
Sbjct: 384 VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCV 443

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
            G + EA   L +M   G  P+  T+ +       ++  L K D N
Sbjct: 444 KGLFNEALALLSKMEDNGRIPDAKTYEI-------IILSLFKKDEN 482



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 149/300 (49%), Gaps = 21/300 (7%)

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           R +  +  TP  + +G ++  L ++   + A  L ++ME K  +  +VT   LIN   Q 
Sbjct: 49  RLLHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQL 108

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFT-------------YSSLMDGLCKGGCSSQAMELLQM 286
                +  +F  +  KG +PNV T             Y +L++GLCK G +  A++LL+ 
Sbjct: 109 GQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRR 168

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +  K  +PN+V Y+T+++ +CK   + EA ++   M  +G+ PD   Y  +IS F  +GK
Sbjct: 169 VDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGK 228

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSISV 405
            ++A +  ++M+L  I P+  T+       N +V G CK    +  + V+  M  + I  
Sbjct: 229 LKDAIDLFNKMILENIKPDVYTF-------NILVDGFCKDGKMKEGKTVFAMMMKQGIKP 281

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +TY SL+  +C    ++K+  I + +   G  PD  +++ ++      +K+ +A  L 
Sbjct: 282 NVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLF 341



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 152/310 (49%), Gaps = 12/310 (3%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K VN+A   FD  +   + G   D  T+S +IS      + + A DL +++  E      
Sbjct: 192 KLVNEA---FDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDV 248

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             F  +  G+ +  +  +   VF  M + G +P   +Y +++       Q+  A   +  
Sbjct: 249 YTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNT 308

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M + G+ P   S N++I   CK    +D A  +F++M  +   P+  TY +LI+GLC+ G
Sbjct: 309 MAQGGVNPDTQSYNIMINGFCK-IKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSG 367

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL--------FEEMRSKGV 257
           KI  A +L  EM  +   P ++TY+S+++ LC++  V++A+ L        FE++  KG 
Sbjct: 368 KISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGY 427

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
             +V+ Y+ ++ G C  G  ++A+ LL  M      P+  TY  ++  L K+ +   A +
Sbjct: 428 NLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEK 487

Query: 318 ILDRMKLQGL 327
           +L  M  +GL
Sbjct: 488 LLREMIARGL 497


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/414 (31%), Positives = 206/414 (49%), Gaps = 17/414 (4%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNK---EKCDITEDIFLS-ICRGYGRVHRPLDAMRVF 108
           FS ++S +   N+F     L +++          T  I ++  CR   R   PL A+ V 
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCR---RSQLPL-ALAVL 139

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            KM + G EP   +  ++L       ++  A      M   G QP   + N LI  L  +
Sbjct: 140 GKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH 199

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +   +A   I R M  +GC PD  TYG ++NGLC+ G    A  L  +ME     P V+ 
Sbjct: 200 NKASEAMALIDR-MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y ++I+GLC+ K +++A+ LF+EM +KG+ PNV TYSSL+  LC  G  S A  LL  MI
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            ++  P++ T+S L++   KEGKL EA ++ D M  + + P    Y  +I+ FC   +  
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDS 407
           EA    + MV     P+ +T+       NT+++G CK        +V+  M  R +  ++
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTY-------NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 431

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +TY+ LI    + GD   +  I  E+V DG  P+  T++ ++  L    K+ +A
Sbjct: 432 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485



 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 225/454 (49%), Gaps = 12/454 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + +L      K +++A+ + D     +  G++ +  TF+ +I  L   N+   A  L
Sbjct: 152 VTLSSLLNGYCHSKRISEAVALVDQM---FVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           +DR+  + C      +  +  G  +      A  + +KM++   EP    Y T++  L +
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              +  A   ++ M   GI+P V + + LI  LC N G    A ++  +M  R   PD +
Sbjct: 269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC-NYGRWSDASRLLSDMIERKINPDVF 327

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           T+  LI+   + GK+ EA++L+ EM  ++  P++VTY+SLING C    ++EA ++FE M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            SK   P+V TY++L+ G CK     + ME+ + M  +    N VTY+ L+ GL + G  
Sbjct: 388 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 447

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
             A EI   M   G+ P+   Y  ++   C  GK ++A    + +    + P        
Sbjct: 448 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT------- 500

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           I  +N +++G+CK       + ++ ++  + +  D + Y+++I+ FC+KG   ++  +  
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFK 560

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           E+  DG LP+ G ++ ++ A         +AEL+
Sbjct: 561 EMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 217/447 (48%), Gaps = 9/447 (2%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE 79
           +L+ A   +NK  V+          G  H++ T+S++I+     +Q   A  +L ++ K 
Sbjct: 86  KLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKL 145

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
             +       S+  GY    R  +A+ + D+M   G +P   ++ T++  L   N+   A
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 205

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
                 M   G QP + +  V++  LCK  G  D AF +  +M      P    Y T+I+
Sbjct: 206 MALIDRMVAKGCQPDLVTYGVVVNGLCKR-GDTDLAFNLLNKMEQGKLEPGVLIYNTIID 264

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           GLC+   + +A  LFKEMETK   P VVTY+SLI+ LC      +A RL  +M  + + P
Sbjct: 265 GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 324

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +VFT+S+L+D   K G   +A +L   M+ +   P+IVTYS+L+NG C   +L EA ++ 
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           + M  +   PD   Y  +I  FC   + +E      EM   G+  N +T+       N +
Sbjct: 385 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY-------NIL 437

Query: 380 VQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +QGL +  D + A +++  M +  +  + +TY++L+   CK G + K+  + + L     
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
            P   T++ ++  +    K+    +L 
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLF 524



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 199/419 (47%), Gaps = 43/419 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T+ ++++ L        A +LL+++ + K +    I+ +I  G  +     
Sbjct: 214 AKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMD 273

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M+  G  P   +Y ++++ L    +   A R    M E  I P V + + LI
Sbjct: 274 DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 333

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  K  G +  A K++ EM  R   P   TY +LING C   ++ EAK++F+ M +K C
Sbjct: 334 DAFVK-EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMR----------------------------------- 247
            P VVTY +LI G C+ K VEE M                                    
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +F+EM S GV PN+ TY++L+DGLCK G   +AM + + +   +  P I TY+ ++ G+C
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K GK+++  ++   + L+G+KPD   Y  +IS FC  G  +EA     EM   G  PN  
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
            ++  IR        L   D   + ++   MR+   + D+ T   L+T     G + KS
Sbjct: 573 CYNTLIRAR------LRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLHDGRLDKS 624



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 184/364 (50%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M +    P+   +  +L+ + + N+  +       M+ +GI     + ++LI
Sbjct: 64  DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILI 123

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  P+  T  +L+NG C   +I EA  L  +M     
Sbjct: 124 NCFCRRS-QLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY 182

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VT+ +LI+GL       EAM L + M +KG +P++ TY  +++GLCK G +  A  
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN 242

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M   +  P ++ Y+T+++GLCK   + +A+ +   M+ +G++P+   Y  +ISC C
Sbjct: 243 LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           + G++ +A+  L +M+   I P+  T+S        ++    K      A ++Y  M  R
Sbjct: 303 NYGRWSDASRLLSDMIERKINPDVFTFS-------ALIDAFVKEGKLVEAEKLYDEMVKR 355

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI    +TYSSLI  FC    + ++ ++ + +V   C PD  T++ ++      +++ + 
Sbjct: 356 SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG 415

Query: 462 AELL 465
            E+ 
Sbjct: 416 MEVF 419



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 165/325 (50%), Gaps = 15/325 (4%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P +   + L+ A+ K +   D    +  +M N G   + YTY  LIN  CR  ++  A  
Sbjct: 79  PSIIEFSKLLSAIAKMN-KFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALA 137

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +  +M      P +VT +SL+NG C SK + EA+ L ++M   G +PN  T+++L+ GL 
Sbjct: 138 VLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLF 197

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
               +S+AM L+  M++K  +P++VTY  ++NGLCK G    A  +L++M+   L+P   
Sbjct: 198 LHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL 257

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDP 388
           +Y  II   C      +A N   EM   GI PN +T+S       +++  LC     +D 
Sbjct: 258 IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYS-------SLISCLCNYGRWSDA 310

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           +R       M  R I+ D  T+S+LI  F K+G + ++ ++ DE+V     P   T+S++
Sbjct: 311 SRLLS---DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query: 449 MTALWDRRKMRQAAELLLLELMNKC 473
           +       ++ +A ++    +   C
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHC 392



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 182/346 (52%), Gaps = 4/346 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K ++ AL +F     +   G R +  T+S +IS L +  ++  A  LL  + + K +   
Sbjct: 270 KHMDDALNLFKEMETK---GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             F ++   + +  + ++A +++D+M +   +P+  +Y +++      ++L  A + +  
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M      P V + N LIK  CK    ++   ++FREM  RG   ++ TY  LI GL + G
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYK-RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
               A+E+FKEM +    P ++TY +L++GLC++  +E+AM +FE ++   +EP ++TY+
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 505

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            +++G+CK G      +L   +  K  +P++V Y+T+++G C++G  +EA  +   MK  
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           G  P++G Y  +I      G  + +A  + EM   G   +  T  L
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 611



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 159/308 (51%), Gaps = 9/308 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F EM      P    +  L++ + ++ K      L ++M+         TY+ 
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C+   +  A+ +  +M   G EPN+ T SSL++G C     S+A+ L+  M    
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++PN VT++TL++GL    K  EA+ ++DRM  +G +PD   YG +++  C  G    A 
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           N L++M  G + P  L       I+NT++ GLCK    + A  ++  M  + I  + +TY
Sbjct: 242 NLLNKMEQGKLEPGVL-------IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           SSLI+C C  G    ++R++ +++     PD  T+SA++ A     K+ + AE L  E++
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE-AEKLYDEMV 353

Query: 471 NKCVEAEV 478
            + ++  +
Sbjct: 354 KRSIDPSI 361



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 1/182 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F +M   G  P   +Y T+L  L +  +L+ A   + +++   ++P + + N++I+
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +CK +G ++  + +F  +  +G  PD   Y T+I+G CR G   EA  LFKEM+     
Sbjct: 510 GMCK-AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 568

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    Y +LI    +    E +  L +EMRS G   +  T   + + L  G      +++
Sbjct: 569 PNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDM 628

Query: 284 LQ 285
           L 
Sbjct: 629 LS 630


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 190/339 (56%), Gaps = 11/339 (3%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           + H+  +A+ +FD+MK+ G +P+  +Y ++L    ++  +  A + Y  M   G +P V 
Sbjct: 413 QAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVV 472

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +   L++         D A+ +  EM   G + + YTY  LING+C + ++ E   + K 
Sbjct: 473 TYITLMRGYIAKK-DFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKS 531

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
             ++   PT++TY S+ING  ++  +  A  ++++MR KG+ PN+ TY+S +DG C+ GC
Sbjct: 532 FMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGC 591

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
           S  A+++L  +  +  +P+IV Y+ L+NG C+EG +  A+++L  +   GL P+  +Y  
Sbjct: 592 SDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNS 651

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF--QV 394
           +I+ + ++   +E + F + M+ GGI  +  T++       T++ G  K D N AF  ++
Sbjct: 652 LITGYKNLNMMKEVSKFYESMIKGGIVADTSTYT-------TLIDGFSK-DGNVAFALEL 703

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           Y  M  +    D+ T+++L    C+ GDI  + ++++E+
Sbjct: 704 YSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEM 742



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 208/461 (45%), Gaps = 45/461 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+R D   F  ++S  +       A  L D +   + D  + ++        ++     A
Sbjct: 187 GYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRA 246

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-------------- 150
           +R+  +MKE G +    +Y T++ +LV+  +++ A R    MR+ G              
Sbjct: 247 LRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRG 306

Query: 151 ---------------------IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
                                I P      VLI+  C   G    A+++ R+M  +G  P
Sbjct: 307 YCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRG-CDQVGMTQKAYELCRQMTGQGLLP 365

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
            ++    ++ GL    +  +A  LF+EM      P V TY +LI+  CQ+  + EA+ LF
Sbjct: 366 STFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWHCQAHKLREALNLF 424

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           + M+  GV+P++ TY+SL+ G CK GC  +A++L   M  +  +PN+VTY TL+ G   +
Sbjct: 425 DRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAK 484

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
                A  +LD MK  G+  +   Y  +I+  C + +  E    L   +  G  P  +T+
Sbjct: 485 KDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTY 544

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N+++ G  K      AF VY  MR + +  + +TY+S I  +C+ G    + +
Sbjct: 545 -------NSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALK 597

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           +++++   G  PD   ++A++        M  A +LL++ L
Sbjct: 598 MLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILL 638



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 215/436 (49%), Gaps = 17/436 (3%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL+ +  ++    A+ +F+    E A+    D  T++ +I     A++ R A +L DR+ 
Sbjct: 373 VLKGLLNDRRWKDAVCLFE----EMADSGLPDVFTYNNLIHWHCQAHKLREALNLFDRMK 428

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K     + + + S+  GY +     +A++++ +M   G +P   +YIT++   + +    
Sbjct: 429 KAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFD 488

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT--MDAAFKIFREMPNRGCTPDSYTYG 195
            A+     M++ G+     + NVLI  +C       +D   K F    + G  P   TY 
Sbjct: 489 NAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFM---SEGFIPTMMTYN 545

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           ++ING  + G +  A  ++++M  K   P ++TYTS I+G C++   + A+++  ++R +
Sbjct: 546 SIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRR 605

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G++P++  Y++L++G C+ G  S A++LL +++     PN V Y++L+ G      ++E 
Sbjct: 606 GLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEV 665

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
            +  + M   G+  D   Y  +I  F   G    A     EM+  G  P+  T++     
Sbjct: 666 SKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFT----- 720

Query: 376 HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
              +  GLC++ D + A ++   MR   +  +   Y+ LI  + +   + ++ R+ DE++
Sbjct: 721 --ALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEML 778

Query: 435 LDGCLPDEGTWSAVMT 450
             G  PD+ T+  +++
Sbjct: 779 NMGIQPDDTTYDILVS 794



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 203/425 (47%), Gaps = 18/425 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE--DIFL--SICRGYGRVHR 100
           GF   + T+  M+  LV   +   A     RVN E  D  +  D+ +  ++ RGY     
Sbjct: 257 GFDTCDFTYRTMVDVLVKTGRMEEAL----RVNDEMRDAGKKMDVIVATTLMRGYCLRQE 312

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A+ +F +  + G  PT   Y  ++    +    + A+   R M   G+ P    L++
Sbjct: 313 VGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSL 372

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++K L  +    DA   +F EM + G  PD +TY  LI+  C+  K+ EA  LF  M+  
Sbjct: 373 VLKGLLNDRRWKDAVC-LFEEMADSGL-PDVFTYNNLIHWHCQAHKLREALNLFDRMKKA 430

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P++ TY SL+ G C+   ++EA++L+ EM  +G +PNV TY +LM G         A
Sbjct: 431 GVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNA 490

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             LL  M       N  TY+ L+NG+C   ++ E   +L     +G  P    Y  II+ 
Sbjct: 491 YALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIING 550

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMR 399
           F   G    A     +M   G+ PN +T++       + + G C+T   + A ++   +R
Sbjct: 551 FVKAGMMGSAFTVYQQMREKGLPPNIITYT-------SFIDGYCRTGCSDMALKMLNDVR 603

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            R +  D + Y++LI  FC++G++  + +++  L+ DG  P+   +++++T   +   M+
Sbjct: 604 RRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMK 663

Query: 460 QAAEL 464
           + ++ 
Sbjct: 664 EVSKF 668



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 162/366 (44%), Gaps = 10/366 (2%)

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           P  A   +  M   G  P  KS   +L      +  K A   +  MR  G +      + 
Sbjct: 138 PSAATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDA 197

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+ A C   G  + A ++F EMP     PD   Y   I  LC+LG    A  + +EM+  
Sbjct: 198 LMSA-CLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEV 256

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                  TY ++++ L ++  +EEA+R+ +EMR  G + +V   ++LM G C       A
Sbjct: 257 GFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNA 316

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + L +  +     P  V Y  L+ G  + G  Q+A E+  +M  QGL P       ++  
Sbjct: 317 LNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKG 376

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMR 399
             +  ++++A    +EM   G+ P+  T+       N ++   C+    R A  ++  M+
Sbjct: 377 LLNDRRWKDAVCLFEEMADSGL-PDVFTY-------NNLIHWHCQAHKLREALNLFDRMK 428

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
              +     TY+SL+  +CKKG + ++ ++  E+ ++G  P+  T+  +M     ++   
Sbjct: 429 KAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFD 488

Query: 460 QAAELL 465
            A  LL
Sbjct: 489 NAYALL 494



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 89/202 (44%), Gaps = 8/202 (3%)

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           S A +    M+++   P+I + + LL    +    ++A+ +   M+ +G + DA ++  +
Sbjct: 139 SAATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDAL 198

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYL 396
           +S     G +++A    DEM    I P++       R++   +  LCK  D  RA ++  
Sbjct: 199 MSACLKEGMHEDAVRLFDEMPGAEIDPDQ-------RVYALAITALCKLGDGGRALRMLR 251

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+         TY +++    K G + ++ R+ DE+   G   D    + +M     R+
Sbjct: 252 EMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQ 311

Query: 457 KMRQAAELLLLELMNKCVEAEV 478
           ++  A  L    L +  V  +V
Sbjct: 312 EVGNALNLFKETLKDGIVPTKV 333


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 199/399 (49%), Gaps = 44/399 (11%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F+++      P    +  +L  LV+           + M   GI+P + + N+LI
Sbjct: 68  DAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILI 127

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYT----------------------------- 193
              C+  G +  AF +F ++   G  PD+ T                             
Sbjct: 128 NCFCQ-LGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGF 186

Query: 194 ------YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                 YGTLI+GLC++G+   A +L + ++     P VV Y ++I+ +C+ K V EA  
Sbjct: 187 HFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFD 246

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           LF EM SKG+ P+V TYS+L+ G C  G    A++L   MI +  +P++ T++ L+N  C
Sbjct: 247 LFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFC 306

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K+GK++E   + D M  QG+KP+   Y  ++  +C + +  +A +  + M  GG+ P+  
Sbjct: 307 KDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQ 366

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           ++S+       ++ G CK    + A  ++  M  ++I  D +TYSSLI    K G I  +
Sbjct: 367 SYSI-------MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYA 419

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++VD++   G  P+  T+++++ AL    ++ +A  LL
Sbjct: 420 LQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALL 458



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 209/414 (50%), Gaps = 13/414 (3%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           + +A +  D   A    GF  D  ++  +I  L    + R A DLL RV+         +
Sbjct: 171 IQQAFLFHDKVVAL---GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVM 227

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + +I     +V    +A  +F +M   G  P   +Y  +++      +LK A   +  M 
Sbjct: 228 YNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMI 287

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              I+P V + N+L+ A CK+ G M     +F  M  +G  P+  TY +L++G C + ++
Sbjct: 288 LENIKPDVYTFNILVNAFCKD-GKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEV 346

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +AK +F  M     +P + +Y+ +ING C+ K  +EAM LF+EM  K + P+V TYSSL
Sbjct: 347 NKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSL 406

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGL K G  S A++L+  M  +   PNI TY+++L+ LCK  ++ +A+ +L + K +G 
Sbjct: 407 IDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGF 466

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           +PD   Y  +I   C  GK ++A    +++++ G       ++L +  +  ++QG C   
Sbjct: 467 QPDISTYSILIKGLCQSGKLEDARKVFEDLLVKG-------YNLDVYAYTIMIQGFCVEG 519

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
             N A  +   M +     D+ TY  +I    KK +   + +++ E++  G LP
Sbjct: 520 LFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARG-LP 572



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 209/422 (49%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  TF+ +   L    Q + A    D+V        +  + ++  G  +V     A
Sbjct: 150 GYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAA 209

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  ++     +P    Y T++  + +   +  AF  +  M   GI P V + + LI  
Sbjct: 210 LDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISG 269

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  A  +F +M      PD YT+  L+N  C+ GK+ E K +F  M  +   P
Sbjct: 270 FCI-LGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP 328

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY SL++G C  K V +A  +F  M   GV P++ +YS +++G CK     +AM L 
Sbjct: 329 NFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLF 388

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P++VTYS+L++GL K G++  A++++D+M  +G+ P+   Y  I+   C  
Sbjct: 389 KEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKT 448

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            +  +A   L +    G  P+  T+S+       +++GLC++     A +V+  +  +  
Sbjct: 449 HQVDKAIALLTKFKDKGFQPDISTYSI-------LIKGLCQSGKLEDARKVFEDLLVKGY 501

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           ++D   Y+ +I  FC +G  +++  ++ ++  +GC+PD  T+  ++ +L+ + +   A +
Sbjct: 502 NLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEK 561

Query: 464 LL 465
           LL
Sbjct: 562 LL 563



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 168/340 (49%), Gaps = 4/340 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K VN+A   FD  +   + G   D  T+S +IS      + + A DL +++  E      
Sbjct: 239 KLVNEA---FDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDV 295

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             F  +   + +  +  +   VFD M + G +P   +Y +++       ++  A   +  
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNT 355

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M + G+ P + S +++I   CK     D A  +F+EM  +   PD  TY +LI+GL + G
Sbjct: 356 MAQGGVNPDIQSYSIMINGFCK-IKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG 414

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +I  A +L  +M  +   P + TY S+++ LC++  V++A+ L  + + KG +P++ TYS
Sbjct: 415 RISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYS 474

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            L+ GLC+ G    A ++ + ++ K +  ++  Y+ ++ G C EG   EA+ +L +M+  
Sbjct: 475 ILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDN 534

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           G  PDA  Y  II       +   A   L EM+  G+  N
Sbjct: 535 GCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 121/239 (50%), Gaps = 8/239 (3%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K+VNKA  IF++       G   D  ++S+MI+      +F  A +L   ++++  +I  
Sbjct: 344 KEVNKAKSIFNTMAQ---GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRK--NIIP 398

Query: 86  DI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+  + S+  G  +  R   A+++ D+M + G  P   +Y ++L  L + +Q+  A    
Sbjct: 399 DVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALL 458

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
              ++ G QP +++ ++LIK LC+ SG ++ A K+F ++  +G   D Y Y  +I G C 
Sbjct: 459 TKFKDKGFQPDISTYSILIKGLCQ-SGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCV 517

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
            G   EA  L  +ME   C P   TY  +I  L +    + A +L  EM ++G+  N +
Sbjct: 518 EGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLNFY 576



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 122/275 (44%), Gaps = 43/275 (15%)

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           ++Y+S       +  V++A+ LF  +  +   P  F ++ ++  L K       + L Q 
Sbjct: 51  ISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQK 110

Query: 287 MISKRHRPNIVTYSTLLN-----------------------------------GLCKEGK 311
           M  +  +PN+V  + L+N                                   GLC +G+
Sbjct: 111 MEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQ 170

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +Q+A    D++   G   D   YG +I   C +G+ + A + L  +    + PN      
Sbjct: 171 IQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN------ 224

Query: 372 HIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
            + ++NT++  +CK    N AF ++  M ++ IS D +TYS+LI+ FC  G +  +  + 
Sbjct: 225 -VVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLF 283

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++++L+   PD  T++ ++ A     KM++   + 
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVF 318


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 208/387 (53%), Gaps = 5/387 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T+S ++S    A +   + +LL  V          ++  +     +  R  +A+ + 
Sbjct: 81  DMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELL 140

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M   GC PT  ++ T+++    E  L++A    + M   G++  V + N L+  LCK 
Sbjct: 141 EEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCK- 199

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G +  A ++   M   GC PD   Y + + GLC+ GK+ +A ++ ++M      P VVT
Sbjct: 200 AGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVT 259

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           Y ++++GLC+S  ++ A+ + E+M S  G   NV  YS+++DGLCK G + +A  +++ M
Sbjct: 260 YNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAM 319

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                RP++VTYS+L+NGLCK GK++EAVE +  M ++G KP+A  Y  ++   C  G+ 
Sbjct: 320 ARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRL 379

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            EA   ++EM  GG   +    S  +  +N ++ GLCK    + A + +  MR++    D
Sbjct: 380 AEAERMVEEMSSGGGGGHHCPPS--VSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPD 437

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDEL 433
            ++YS+++    + G   ++  I+ E+
Sbjct: 438 GVSYSTIVEGLARSGRALQAEMILSEV 464



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 215/427 (50%), Gaps = 18/427 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFD 109
           +++ ++  L    ++  AE+L+  +       T D+  + ++  GY +  +  ++  +  
Sbjct: 47  SYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLK 106

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           ++   G  P    Y  V+A L +  +L  A      M   G  P + + N LI   C+  
Sbjct: 107 EVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREK 166

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             ++ A  + ++M   G   D  TY TL++GLC+ G++ EA++L + M+   C+P VV Y
Sbjct: 167 -NLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAY 225

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           +S + GLC+S  V +A ++ E+MR    +PNV TY++++DGLCK G    A+E+++ M S
Sbjct: 226 SSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS 285

Query: 290 KRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                 N+V YST+++GLCK G+ QEA  +++ M   G +PD   Y  +++  C  GK +
Sbjct: 286 SDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIE 345

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSIS 404
           EA   + EM + G  PN +T+        ++V GLC      +  R  +   S       
Sbjct: 346 EAVEAVREMAMEGCKPNAVTYC-------SLVHGLCSCGRLAEAERMVEEMSSGGGGGHH 398

Query: 405 VDSL--TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
                 TY++LI   CK G I  + +    +   GC PD  ++S ++  L    +  Q A
Sbjct: 399 CPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQ-A 457

Query: 463 ELLLLEL 469
           E++L E+
Sbjct: 458 EMILSEV 464



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 199/393 (50%), Gaps = 45/393 (11%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M   GC P   ++  ++    ++ +     R    M    IQP V S N L++ LCK   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 171 TMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEAKELFKE-----------M 217
             +A  ++ R+M +RG   TPD  TY TL++G C+ GK+ E++EL KE           M
Sbjct: 61  WHEAE-ELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALM 119

Query: 218 ETK------------------------ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
            TK                         C PT++T+ +LI+G C+ K++E A  L ++M 
Sbjct: 120 YTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMA 179

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           + GV+ +V TY++LMDGLCK G   +A +LL+ M +    P++V YS+ + GLCK GK+ 
Sbjct: 180 ASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVL 239

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +A ++L++M+     P+   Y  I+   C  GK   A   +++M       +     L++
Sbjct: 240 DAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMA------SSDGCGLNV 293

Query: 374 RIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
             ++TVV GLCK    + A  V  +M       D +TYSSL+   CK G I ++   V E
Sbjct: 294 VGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVRE 353

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + ++GC P+  T+ +++  L    ++ +A  ++
Sbjct: 354 MAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMV 386



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 150/287 (52%), Gaps = 7/287 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G + D  T++ ++  L  A + + AE LL+R+    C      + S   G  +  + L
Sbjct: 180 ASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVL 239

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-GIQPCVASLNVL 161
           DA +V ++M++   +P   +Y T+L  L +  ++  A      M    G    V   + +
Sbjct: 240 DAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTV 299

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LCK   T +A   +   M   GC PD  TY +L+NGLC+ GKI EA E  +EM  + 
Sbjct: 300 VDGLCKLGRTQEAR-SVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG 358

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-----VEPNVFTYSSLMDGLCKGGC 276
           C P  VTY SL++GLC    + EA R+ EEM S G       P+V TY++L+ GLCK G 
Sbjct: 359 CKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGR 418

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
              A++  Q M S+   P+ V+YST++ GL + G+  +A  IL  ++
Sbjct: 419 IDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 182/360 (50%), Gaps = 16/360 (4%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G R D   ++ +++ L  + +   A +LL+ + +  C  T   F ++  G  R     
Sbjct: 110 SRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLE 169

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  +  KM   G +    +Y T++  L +  +L+ A +    M+  G  P V + +  +
Sbjct: 170 MADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFV 229

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKA 221
             LCK+   +D A ++  +M +    P+  TY T+++GLC+ GKI  A E+ ++M  +  
Sbjct: 230 YGLCKSGKVLD-AHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDG 288

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C   VV Y+++++GLC+    +EA  + E M   G  P+V TYSSL++GLCK G   +A+
Sbjct: 289 CGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAV 348

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL-----KPDAGLYGK 336
           E ++ M  +  +PN VTY +L++GLC  G+L EA  +++ M   G       P    Y  
Sbjct: 349 EAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNA 408

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL 396
           +I   C  G+  +A  F   M   G  P+ +++S       T+V+GL ++   RA Q  +
Sbjct: 409 LIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYS-------TIVEGLARS--GRALQAEM 459


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 233/496 (46%), Gaps = 53/496 (10%)

Query: 15  SAQVLQLIRAEKDVNK-----ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
            A +  L RA  DV +     A+  ++      A+    D  T+ ++I     A +    
Sbjct: 47  GASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLG 106

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDKMKEFGCEPTPKSYITVLA 128
              L  V K+   +    F  + +G     R  DAM  V  +M E GC P   SY  +L 
Sbjct: 107 FAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLK 166

Query: 129 ILVEENQLKLAFRFYRHM---REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
            L +EN+ + A      M   R  G  P V S   +I    K  G  D A+  + EM +R
Sbjct: 167 GLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK-EGDSDKAYSTYHEMLDR 225

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD  TY ++I  LC+   + +A E+   M      P  +TY S+++G C S   +EA
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           +   ++MRS GVEP+V TYS LMD LCK G   +A ++   M  +  +P I TY TLL G
Sbjct: 286 IGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQG 345

Query: 306 --------------------------------LC---KEGKLQEAVEILDRMKLQGLKPD 330
                                           +C    +GK+ +A+ +  +M+ QGL P+
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPN 405

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
           A  YG +I   C  G+ ++A  + ++M+  G++P  +       ++N+++ GLC  +   
Sbjct: 406 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNI-------VYNSLIHGLCTCNKWE 458

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           RA ++ L M +R I ++++ ++S+I   CK+G + +S ++ + +V  G  P+  T++ ++
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518

Query: 450 TALWDRRKMRQAAELL 465
                  KM +A +LL
Sbjct: 519 NGYCLAGKMDEAMKLL 534



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 229/459 (49%), Gaps = 20/459 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +   + ++KA+ + ++      NG   D  T++ ++    S+ Q + A   
Sbjct: 232 VTYNSIIAALCKAQAMDKAMEVLNTMVK---NGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 73  LDRVNKEKCD---ITEDIFLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           L ++  +  +   +T  + +  +C+      R ++A ++FD M + G +P   +Y T+L 
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKN----GRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
               +  L         M   GI P     ++LI A   N G +D A  +F +M  +G  
Sbjct: 345 GYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA-NQGKVDQAMLVFSKMRQQGLN 403

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P++ TYG +I  LC+ G++ +A   F++M  +  SP  + Y SLI+GLC     E A  L
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 463

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             EM  +G+  N   ++S++D  CK G   ++ +L ++M+    +PN++TY+TL+NG C 
Sbjct: 464 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCL 523

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            GK+ EA+++L  M   GLKP+   Y  +I+ +C I + ++A     EM   G++P+ +T
Sbjct: 524 AGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       N ++QGL +T    A  ++Y+ +      ++  TY+ ++   CK      + 
Sbjct: 584 Y-------NIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           ++   L L     +  T++ ++ AL    +  +A +L +
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFV 675



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 196/436 (44%), Gaps = 46/436 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS T     G + + +T+  ++    +         LLD + +        +F  +  
Sbjct: 323 IFDSMTKR---GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y    +   AM VF KM++ G  P   +Y  V+ IL +  +++ A  ++  M + G+ P
Sbjct: 380 AYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439

Query: 154 CVASLNVLIKALCK----------------------------------NSGTMDAAFKIF 179
                N LI  LC                                     G +  + K+F
Sbjct: 440 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 499

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  P+  TY TLING C  GK+ EA +L   M +    P  VTY++LING C+ 
Sbjct: 500 ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKI 559

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +E+A+ LF+EM S GV P++ TY+ ++ GL +   ++ A EL   +     +  + TY
Sbjct: 560 SRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 619

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     +A+++   + L  LK +A  +  +I     +G+  EA +       
Sbjct: 620 NIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS 679

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G+ PN   W+  +   N + QGL +       Q++LSM +   +VDS   + ++    +
Sbjct: 680 NGLVPN--YWTYRLMAENIIGQGLLE----ELDQLFLSMEDNGCTVDSGMLNFIVRELLQ 733

Query: 420 KGDIHKSA---RIVDE 432
           +G+I ++     ++DE
Sbjct: 734 RGEITRAGTYLSMIDE 749



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 142/306 (46%), Gaps = 15/306 (4%)

Query: 174 AAFKIFREMPNRGC---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           AA   +  M   G    TPD  TYG LI   CR G++         +  K      + +T
Sbjct: 67  AAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFT 126

Query: 231 SLINGLCQSKSVEEAMRL-FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            L+ GLC  K   +AM +    M   G  PNVF+Y+ L+ GLC    S +A+ELL MM  
Sbjct: 127 PLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186

Query: 290 KR---HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
            R     P++V+Y+T++NG  KEG   +A      M  +G+ PD   Y  II+  C    
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQA 246

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
             +A   L+ MV  G+ P+ +T+       N+++ G C +  P  A      MR+  +  
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTY-------NSILHGYCSSGQPKEAIGFLKKMRSDGVEP 299

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D +TYS L+   CK G   ++ +I D +   G  P+  T+  ++     +  + +   LL
Sbjct: 300 DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 359

Query: 466 LLELMN 471
            L + N
Sbjct: 360 DLMVRN 365



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 166/343 (48%), Gaps = 6/343 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V  A++ F+    E   G    N  ++ +I  L + N++  AE+L
Sbjct: 407 VTYGAVIGILCKSGRVEDAMLYFEQMIDE---GLSPGNIVYNSLIHGLCTCNKWERAEEL 463

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C +    F SI   + +  R +++ ++F+ M   G +P   +Y T++    
Sbjct: 464 ILEMLDRGIC-LNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYC 522

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              ++  A +    M  +G++P   + + LI   CK S  M+ A  +F+EM + G +PD 
Sbjct: 523 LAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS-RMEDALVLFKEMESSGVSPDI 581

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  ++ GL +  +   AKEL+  +        + TY  +++GLC++K  ++A+++F+ 
Sbjct: 582 ITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQN 641

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +    ++    T++ ++D L K G + +A +L     S    PN  TY  +   +  +G 
Sbjct: 642 LCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGL 701

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           L+E  ++   M+  G   D+G+   I+      G+   A  +L
Sbjct: 702 LEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL 744



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 16/265 (6%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F E+  +    ++      +  + +  S   A+  +  M   G   V P++ TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARD-SPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            L+   C+ G        L  +I K  R + + ++ LL GLC + +  +A++I L RM  
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV---LGGITPNRLTWSLHIRIHNTVVQ 381
            G  P+   Y  ++   CD  + QEA   L  M     GG  P+ ++++       TV+ 
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT-------TVIN 204

Query: 382 GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           G  K  D ++A+  Y  M +R I  D +TY+S+I   CK   + K+  +++ +V +G +P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
           D  T+++++       + ++A   L
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFL 289



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 123/275 (44%), Gaps = 2/275 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ +I+    A +   A  LL  +           + ++  GY ++ R  DA
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+  G  P   +Y  +L  L +  +   A   Y  + E G Q  +++ N+++  
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN  T D A ++F+ +       ++ T+  +I+ L ++G+  EAK+LF    +    P
Sbjct: 626 LCKNKLT-DDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVP 684

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  +   +     +EE  +LF  M   G   +    + ++  L + G  ++A   L
Sbjct: 685 NYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL 744

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
             MI ++H     + ++L   L   GK QE    L
Sbjct: 745 S-MIDEKHFSLEASTASLFIDLLSGGKYQEYYRFL 778


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/414 (31%), Positives = 206/414 (49%), Gaps = 17/414 (4%)

Query: 53   FSLMISKLVSANQFRPAEDLLDRVNK---EKCDITEDIFLS-ICRGYGRVHRPLDAMRVF 108
            FS ++S +   N+F     L +++          T  I ++  CR   R   PL A+ V 
Sbjct: 698  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCR---RSQLPL-ALAVL 753

Query: 109  DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             KM + G EP   +  ++L       ++  A      M   G QP   + N LI  L  +
Sbjct: 754  GKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH 813

Query: 169  SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            +   +A   I R M  +GC PD  TYG ++NGLC+ G    A  L  +ME     P V+ 
Sbjct: 814  NKASEAMALIDR-MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 872

Query: 229  YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
            Y ++I+GLC+ K +++A+ LF+EM +KG+ PNV TYSSL+  LC  G  S A  LL  MI
Sbjct: 873  YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 932

Query: 289  SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
             ++  P++ T+S L++   KEGKL EA ++ D M  + + P    Y  +I+ FC   +  
Sbjct: 933  ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 992

Query: 349  EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
            EA    + MV     P+ +T+       NT+++G CK        +V+  M  R +  ++
Sbjct: 993  EAKQMFEFMVSKHCFPDVVTY-------NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 1045

Query: 408  LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +TY+ LI    + GD   +  I  E+V DG  P+  T++ ++  L    K+ +A
Sbjct: 1046 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 1099



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 189/350 (54%), Gaps = 9/350 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  KM + G EP   +  +++      N++  A      M EIG +P + + N +I 
Sbjct: 242 ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIID 301

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK     D AF  F+E+  +G  P+  TY  L+NGLC   +  +A  L  +M  K  +
Sbjct: 302 SLCKTKRVND-AFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKIT 360

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+TY++L++   ++  V EA  LFEEM    ++P++ TYSSL++GLC      +A ++
Sbjct: 361 PNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQM 420

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M+SK    ++V+Y+TL+NG CK  ++++ +++   M  +GL  +   Y  +I  F  
Sbjct: 421 FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 480

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G   +A  F  +M   GI+P+   W+     +N ++ GLC   +  +A  ++  M+ R 
Sbjct: 481 AGDVDKAQEFFSQMDFFGISPD--IWT-----YNILLGGLCDNGELEKALVIFEDMQKRE 533

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           + +D +TY+++I   CK G + ++  +   L L G  PD  T++ +M+ L
Sbjct: 534 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 583



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 225/454 (49%), Gaps = 12/454 (2%)

Query: 13   ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
            +T + +L      K +++A+ + D     +  G++ +  TF+ +I  L   N+   A  L
Sbjct: 766  VTLSSLLNGYCHSKRISEAVALVDQM---FVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 822

Query: 73   LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            +DR+  + C      +  +  G  +      A  + +KM++   EP    Y T++  L +
Sbjct: 823  IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 882

Query: 133  ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
               +  A   ++ M   GI+P V + + LI  LC N G    A ++  +M  R   PD +
Sbjct: 883  YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC-NYGRWSDASRLLSDMIERKINPDVF 941

Query: 193  TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
            T+  LI+   + GK+ EA++L+ EM  ++  P++VTY+SLING C    ++EA ++FE M
Sbjct: 942  TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 1001

Query: 253  RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             SK   P+V TY++L+ G CK     + ME+ + M  +    N VTY+ L+ GL + G  
Sbjct: 1002 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 1061

Query: 313  QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
              A EI   M   G+ P+   Y  ++   C  GK ++A    + +    + P        
Sbjct: 1062 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT------- 1114

Query: 373  IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
            I  +N +++G+CK       + ++ ++  + +  D + Y+++I+ FC+KG   ++  +  
Sbjct: 1115 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFK 1174

Query: 432  ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E+  DG LP+ G ++ ++ A         +AEL+
Sbjct: 1175 EMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 1208



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 205/431 (47%), Gaps = 50/431 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R+D  TF+++I+      Q   A  +L ++ K   +       S+  G+ R +R  DA
Sbjct: 218 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 277

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + DKM E G +P   +Y  ++  L +  ++  AF F++ +   GI+P V +   L+  
Sbjct: 278 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 337

Query: 165 LCKNSGTMDAAF----------------------------------KIFREMPNRGCTPD 190
           LC +S   DAA                                   ++F EM      PD
Sbjct: 338 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 397

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY +LINGLC   +I EA ++F  M +K C   VV+Y +LING C++K VE+ M+LF 
Sbjct: 398 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 457

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EM  +G+  N  TY++L+ G  + G   +A E    M      P+I TY+ LL GLC  G
Sbjct: 458 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 517

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +L++A+ I + M+ + +  D   Y  +I   C  GK +EA +    + L G+ P+ +T++
Sbjct: 518 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYT 577

Query: 371 LHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                  T++ GLC K   +    +Y  M+   +  +  T S         GDI  SA +
Sbjct: 578 -------TMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSD--------GDITLSAEL 622

Query: 430 VDELVLDGCLP 440
           + +++  G  P
Sbjct: 623 IKKMLSCGYAP 633



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 198/419 (47%), Gaps = 43/419 (10%)

Query: 43   ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            A G + D  T+ ++++ L        A +LL+++ + K +    I+ +I  G  +     
Sbjct: 828  AKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMD 887

Query: 103  DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            DA+ +F +M+  G  P   +Y ++++ L    +   A R    M E  I P V + + LI
Sbjct: 888  DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 947

Query: 163  KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             A  K  G +  A K++ EM  R   P   TY +LING C   ++ EAK++F+ M +K C
Sbjct: 948  DAFVK-EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 1006

Query: 223  SPTVVTYTSLINGLCQSKSVEEAMRLFEEMR----------------------------- 253
             P VVTY +LI G C+ K VEE M +F EM                              
Sbjct: 1007 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 1066

Query: 254  ------SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
                  S GV PN+ TY++L+DGLCK G   +AM + + +   +  P I TY+ ++ G+C
Sbjct: 1067 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 1126

Query: 308  KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
            K GK+++  ++   + L+G+KPD   Y  +IS FC  G  +EA     EM   G  PN  
Sbjct: 1127 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 1186

Query: 368  TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
             ++  IR        L   D   + ++   MR+   + D+ T   L+T     G + KS
Sbjct: 1187 CYNTLIRAR------LRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLHDGRLDKS 1238



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 185/363 (50%), Gaps = 7/363 (1%)

Query: 103  DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            DA+ +F +M +    P+   +  +L+ + + N+  +       M+ +GI     + ++LI
Sbjct: 678  DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILI 737

Query: 163  KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               C+ S  +  A  +  +M   G  P+  T  +L+NG C   +I EA  L  +M     
Sbjct: 738  NCFCRRS-QLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY 796

Query: 223  SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
             P  VT+ +LI+GL       EAM L + M +KG +P++ TY  +++GLCK G +  A  
Sbjct: 797  QPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN 856

Query: 283  LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            LL  M   +  P ++ Y+T+++GLCK   + +A+ +   M+ +G++P+   Y  +ISC C
Sbjct: 857  LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 916

Query: 343  DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
            + G++ +A+  L +M+   I P+  T+S  I     V +G        A ++Y  M  RS
Sbjct: 917  NYGRWSDASRLLSDMIERKINPDVFTFSALIDAF--VKEGKLV----EAEKLYDEMVKRS 970

Query: 403  ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
            I    +TYSSLI  FC    + ++ ++ + +V   C PD  T++ ++      +++ +  
Sbjct: 971  IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 1030

Query: 463  ELL 465
            E+ 
Sbjct: 1031 EVF 1033



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 165/325 (50%), Gaps = 15/325 (4%)

Query: 153  PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
            P +   + L+ A+ K +   D    +  +M N G   + YTY  LIN  CR  ++  A  
Sbjct: 693  PSIIEFSKLLSAIAKMN-KFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALA 751

Query: 213  LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            +  +M      P +VT +SL+NG C SK + EA+ L ++M   G +PN  T+++L+ GL 
Sbjct: 752  VLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLF 811

Query: 273  KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
                +S+AM L+  M++K  +P++VTY  ++NGLCK G    A  +L++M+   L+P   
Sbjct: 812  LHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL 871

Query: 333  LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDP 388
            +Y  II   C      +A N   EM   GI PN +T+S       +++  LC     +D 
Sbjct: 872  IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYS-------SLISCLCNYGRWSDA 924

Query: 389  NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
            +R       M  R I+ D  T+S+LI  F K+G + ++ ++ DE+V     P   T+S++
Sbjct: 925  SRLLS---DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 981

Query: 449  MTALWDRRKMRQAAELLLLELMNKC 473
            +       ++ +A ++    +   C
Sbjct: 982  INGFCMHDRLDEAKQMFEFMVSKHC 1006



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 182/346 (52%), Gaps = 4/346 (1%)

Query: 26   KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
            K ++ AL +F     +   G R +  T+S +IS L +  ++  A  LL  + + K +   
Sbjct: 884  KHMDDALNLFKEMETK---GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 940

Query: 86   DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
              F ++   + +  + ++A +++D+M +   +P+  +Y +++      ++L  A + +  
Sbjct: 941  FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 1000

Query: 146  MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
            M      P V + N LIK  CK    ++   ++FREM  RG   ++ TY  LI GL + G
Sbjct: 1001 MVSKHCFPDVVTYNTLIKGFCKYK-RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 1059

Query: 206  KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
                A+E+FKEM +    P ++TY +L++GLC++  +E+AM +FE ++   +EP ++TY+
Sbjct: 1060 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 1119

Query: 266  SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
             +++G+CK G      +L   +  K  +P++V Y+T+++G C++G  +EA  +   MK  
Sbjct: 1120 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 1179

Query: 326  GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G  P++G Y  +I      G  + +A  + EM   G   +  T  L
Sbjct: 1180 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 1225



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 124/521 (23%), Positives = 228/521 (43%), Gaps = 63/521 (12%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S  +T   ++Q      DV+KA   F         G   D  T+++++  L    +   A
Sbjct: 466 SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF---FGISPDIWTYNILLGGLCDNGELEKA 522

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
             + + + K + D+    + ++ RG  +  +  +A  +F  +   G +P   +Y T+++ 
Sbjct: 523 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSG 582

Query: 130 LVEENQLKLAFRFYRHMREIGI--QPCVAS-----------------------LNVLIKA 164
           L  +  L      Y  M++ G+    C  S                       L  +   
Sbjct: 583 LCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSG 642

Query: 165 LCKNSGTM--------------------------DAAFKIFREMPNRGCTPDSYTYGTLI 198
           +CK + ++                          D A  +F EM      P    +  L+
Sbjct: 643 VCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLL 702

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           + + ++ K      L ++M+         TY+ LIN  C+   +  A+ +  +M   G E
Sbjct: 703 SAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYE 762

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PN+ T SSL++G C     S+A+ L+  M    ++PN VT++TL++GL    K  EA+ +
Sbjct: 763 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 822

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           +DRM  +G +PD   YG +++  C  G    A N L++M  G + P  L       I+NT
Sbjct: 823 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL-------IYNT 875

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ GLCK    + A  ++  M  + I  + +TYSSLI+C C  G    ++R++ +++   
Sbjct: 876 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 935

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
             PD  T+SA++ A     K+ + AE L  E++ + ++  +
Sbjct: 936 INPDVFTFSALIDAFVKEGKLVE-AEKLYDEMVKRSIDPSI 975



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 170/357 (47%), Gaps = 33/357 (9%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P +   N L+ A+ K     D    + ++M   G   D YT+  +IN  C   ++  A  
Sbjct: 186 PSIVDFNRLLSAIVKLK-KYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALS 244

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +  +M      P  VT  SL+NG C+   V +A+ L ++M   G +P++  Y++++D LC
Sbjct: 245 ILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC 304

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K    + A +  + +  K  RPN+VTY+ L+NGLC   +  +A  +L  M  + + P+  
Sbjct: 305 KTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 364

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS-------LHIRI---------- 375
            Y  ++  F   GK  EA    +EMV   I P+ +T+S       LH RI          
Sbjct: 365 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 424

Query: 376 -----------HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                      +NT++ G CK        +++  M  R +  +++TY++LI  F + GD+
Sbjct: 425 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 484

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
            K+     ++   G  PD  T++ ++  L D  ++ +A  L++ E M K  E ++DI
Sbjct: 485 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA--LVIFEDMQK-REMDLDI 538



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 145/296 (48%), Gaps = 10/296 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +F +M      P    +  L++ + +L K      L K+ME       + T+  
Sbjct: 169 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 228

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +IN  C    V  A+ +  +M   G EP+  T  SL++G C+    S A+ L+  M+   
Sbjct: 229 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 288

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P+IV Y+ +++ LCK  ++ +A +    ++ +G++P+   Y  +++  C+  ++ +AA
Sbjct: 289 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 348

Query: 352 NFLDEMVLGGITPNRLTWS--LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT 409
             L +M+   ITPN +T+S  L   + N  V          A +++  M   SI  D +T
Sbjct: 349 RLLSDMIKKKITPNVITYSALLDAFVKNGKVL--------EAKELFEEMVRMSIDPDIVT 400

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           YSSLI   C    I ++ ++ D +V  GCL D  +++ ++      +++    +L 
Sbjct: 401 YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 456



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 142/270 (52%), Gaps = 8/270 (2%)

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+ +A +LF +M      P++V +  L++ + + K  +  + L ++M   G+  +++T++
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            +++  C     S A+ +L  M+   + P+ VT  +L+NG C+  ++ +AV ++D+M   
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G KPD   Y  II   C   +  +A +F  E+   GI PN +T++        +V GLC 
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT-------ALVNGLCN 340

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +   + A ++   M  + I+ + +TYS+L+  F K G + ++  + +E+V     PD  T
Sbjct: 341 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 400

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           +S+++  L    ++ +A ++  L +   C+
Sbjct: 401 YSSLINGLCLHDRIDEANQMFDLMVSKGCL 430



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 1/181 (0%)

Query: 104  AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            A  +F +M   G  P   +Y T+L  L +  +L+ A   + +++   ++P + + N++I+
Sbjct: 1064 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 1123

Query: 164  ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             +CK +G ++  + +F  +  +G  PD   Y T+I+G CR G   EA  LFKEM+     
Sbjct: 1124 GMCK-AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 1182

Query: 224  PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            P    Y +LI    +    E +  L +EMRS G   +  T   + + L  G      +++
Sbjct: 1183 PNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDM 1242

Query: 284  L 284
            L
Sbjct: 1243 L 1243


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 231/478 (48%), Gaps = 47/478 (9%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKCDITEDIFLSICRGYG 96
           AE   GF+    T+++++  L      R A  ++++V     E   +   I   +   Y 
Sbjct: 71  AERQTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLWIYA 130

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE-ENQLKLAFRFYRHMREIGIQPCV 155
           +       + VF KM   G  P  K+   VL +L + ++ + +A   Y  M E GI+P V
Sbjct: 131 KKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTV 190

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N ++ + CK  G +  A ++  +M   GC P+  TY  L+NGL   G++ +AKEL +
Sbjct: 191 VTYNTMLDSFCK-QGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQ 249

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM       +  TY  LI G C+   ++EA RL EEM S+G  P + TY+++M GLCK G
Sbjct: 250 EMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWG 309

Query: 276 CSSQAMELLQMMISK--------------------------------RHR---PNIVTYS 300
             S A +LL +M++K                                R R   P++VTY+
Sbjct: 310 RVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYN 369

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL++GLC+ G L  A+ + D M   G  PD   +  ++  FC +G    A    DEM+  
Sbjct: 370 TLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNR 429

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           G+ P+R  +   I      V  L   DP++AF +   M  R    D +TY+  I    K 
Sbjct: 430 GLQPDRFAYITRI------VGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKL 483

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           G++ +++ +V +++ +G +PD  T+++++ A      +R+ A  + LE+++K +   V
Sbjct: 484 GNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRK-ARAVFLEMLSKGIFPSV 540



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 205/424 (48%), Gaps = 13/424 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G R    T++ M+       + + A  LL ++ K  C   D+T ++ ++     G + + 
Sbjct: 185 GIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQ- 243

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A  +  +M   G E +  +Y  ++    E+ QL  A R    M   G  P + + N +
Sbjct: 244 --AKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTI 301

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LCK  G +  A K+   M N+   PD  +Y TLI G  RLG I EA  LF E+  + 
Sbjct: 302 MYGLCK-WGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRG 360

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P+VVTY +LI+GLC+   ++ AMRL +EM   G +P+VFT++ L+ G CK G    A 
Sbjct: 361 LVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAK 420

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           EL   M+++  +P+   Y T + G  K G   +A  + + M  +G  PD   Y   I   
Sbjct: 421 ELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGL 480

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
             +G  +EA+  + +M+  G+ P+ +T++  I  H      L      +A  V+L M ++
Sbjct: 481 HKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAH------LMAGHLRKARAVFLEMLSK 534

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I    +TY+ LI  +  +G +  +     E+   G  P+  T++A++  L   RKM QA
Sbjct: 535 GIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQA 594

Query: 462 AELL 465
            +  
Sbjct: 595 YKFF 598



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 215/433 (49%), Gaps = 30/433 (6%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           ++ T++++++ L  + +   A++L+  + +   +++   +  + RGY    +  +A R+ 
Sbjct: 224 NDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLG 283

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M   G  PT  +Y T++  L +  ++  A +    M    + P + S N LI    + 
Sbjct: 284 EEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTR- 342

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  AF +F E+  RG  P   TY TLI+GLCR+G +  A  L  EM      P V T
Sbjct: 343 LGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFT 402

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +T L+ G C+  ++  A  LF+EM ++G++P+ F Y + + G  K G  S+A  + + M+
Sbjct: 403 FTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEML 462

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           ++   P+++TY+  ++GL K G L+EA E++ +M   GL PD   Y  II      G  +
Sbjct: 463 ARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLR 522

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVV 380
           +A     EM+  GI P+ +T+++ I                              +N ++
Sbjct: 523 KARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALI 582

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GLCK    ++A++ +  M+ + IS +  TY+ LI   C  G   ++ R+  +++     
Sbjct: 583 NGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQ 642

Query: 440 PDEGTWSAVMTAL 452
           PD  T SA++  L
Sbjct: 643 PDSCTHSALLKHL 655



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 36/295 (12%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I  L        A  L D + K   D     F  + RG+ ++     A  +FD+M
Sbjct: 367 TYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEM 426

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G +P   +YIT +   ++      AF     M   G  P + + NV I  L K  G 
Sbjct: 427 LNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHK-LGN 485

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT- 230
           +  A ++ ++M   G  PD  TY ++I+     G + +A+ +F EM +K   P+VVTYT 
Sbjct: 486 LKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTV 545

Query: 231 ----------------------------------SLINGLCQSKSVEEAMRLFEEMRSKG 256
                                             +LINGLC+ + +++A + F EM++KG
Sbjct: 546 LIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKG 605

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           + PN +TY+ L++  C  G   +A+ L + M+ +  +P+  T+S LL  L K+ K
Sbjct: 606 ISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHLNKDYK 660


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 233/486 (47%), Gaps = 47/486 (9%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++R++ D   AL  F  A  ++   + H    +  M+  L      + A  +L  + 
Sbjct: 170 VCAVLRSQADERVALNFFYWADRQWR--YSHHPVVYYTMLDVLSKTKLCQGARRVLRLMT 227

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +   +   + F  +   Y R  +  +A+RV   M++ G EP+     T + +LV+  +L+
Sbjct: 228 RRGIECPPEAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLE 287

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A +F   M+  GI+P + + N LIK  C +   ++ A ++   +P++GC PD  +Y T+
Sbjct: 288 KALKFLERMQVTGIKPDIVTYNSLIKGYC-DLNRIEDALELIAGLPSKGCPPDKVSYYTV 346

Query: 198 INGLCRLGKIYEAK------------------------------------ELFKEMETKA 221
           +  LC+  KI E K                                       KE + K 
Sbjct: 347 MGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKG 406

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
                V Y+++++  CQ   ++EA  L  +M S+G  P+V TY++++DG C+ G   +A 
Sbjct: 407 FHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAK 466

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++LQ M     +PN V+Y+ LLNGLC  GK  EA E+++  +     P+A  YG ++   
Sbjct: 467 KILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGL 526

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRN 400
              GK  EA +   EMV  G  P  +         N ++Q LC+       + YL    N
Sbjct: 527 RREGKLSEACDLTREMVEKGFFPTPVEI-------NLLIQSLCQNQKVVEAKKYLEECLN 579

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  +++ + ++++I  FC+ GD+  +  ++D++ L G  PD  T++A+  AL  + ++ +
Sbjct: 580 KGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDE 639

Query: 461 AAELLL 466
           AAEL++
Sbjct: 640 AAELIV 645



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 204/448 (45%), Gaps = 51/448 (11%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEF 114
           I  LV   +   A   L+R+  +   I  DI  + S+ +GY  ++R  DA+ +   +   
Sbjct: 277 IYVLVKGGKLEKALKFLERM--QVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSK 334

Query: 115 GCEPTPKSYITVLAILVEENQLKL------------------------------------ 138
           GC P   SY TV+  L +E +++                                     
Sbjct: 335 GCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADD 394

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A  F +  ++ G        + ++ + C+  G MD A  +  +M +RGC PD  TY  ++
Sbjct: 395 ALAFLKEAQDKGFHIDKVGYSAIVHSFCQK-GRMDEAKSLVIDMYSRGCNPDVVTYTAIV 453

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +G CRLG+I EAK++ ++M    C P  V+YT+L+NGLC S    EA  +          
Sbjct: 454 DGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWT 513

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PN  TY ++M GL + G  S+A +L + M+ K   P  V  + L+  LC+  K+ EA + 
Sbjct: 514 PNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKY 573

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L+    +G   +   +  +I  FC IG  + A + LD+M L G  P+ +T++        
Sbjct: 574 LEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYT-------A 626

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           +   L K    + A ++ + M ++ +    +TY S+I  + + G +     ++++++   
Sbjct: 627 LFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKRQ 686

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             P    ++ V+  L D   + +A +LL
Sbjct: 687 --PFRTVYNQVIEKLCDFGNLEEAEKLL 712



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 156/343 (45%), Gaps = 8/343 (2%)

Query: 23  RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82
           +   D  K+LVI       Y+ G   D  T++ ++       +   A+ +L ++ K  C 
Sbjct: 424 KGRMDEAKSLVI-----DMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCK 478

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
                + ++  G     + L+A  + +  +E    P   +Y  V+  L  E +L  A   
Sbjct: 479 PNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDL 538

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
            R M E G  P    +N+LI++LC+N   ++A  K   E  N+GC  +   + T+I+G C
Sbjct: 539 TREMVEKGFFPTPVEINLLIQSLCQNQKVVEAK-KYLEECLNKGCAINVVNFTTVIHGFC 597

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           ++G +  A  +  +M      P  VTYT+L + L +   ++EA  L  +M SKG++P   
Sbjct: 598 QIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPV 657

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY S++    + G     + LL+ M+ ++  P    Y+ ++  LC  G L+EA ++L ++
Sbjct: 658 TYRSVIHRYSQWGRVDDMLNLLEKMLKRQ--PFRTVYNQVIEKLCDFGNLEEAEKLLGKV 715

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
                K DA     ++  +   G    A      M    +TP+
Sbjct: 716 LRTASKVDANTCHVLMESYLKKGVAISAYKVACRMFRRNLTPD 758


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 196/370 (52%), Gaps = 14/370 (3%)

Query: 82  DITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           D T +I + S+CR    +H    A+ V  KM + G +P   ++ T++  L  E ++K A 
Sbjct: 121 DYTLNILINSLCR-LSHIHF---AVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAV 176

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
             +  M      P   +  +L+  LCK  G +  A  +F  M  +G  P+ YTY  L+NG
Sbjct: 177 ELFNEMAGRDAMPNTVTFTILVDVLCK-KGMVSEARCVFETMTEKGVEPNIYTYNALMNG 235

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C   ++ +A ++F+ M  K C+P+V +Y+ LING C+S+ ++EA  L  +M  K + PN
Sbjct: 236 YCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPN 295

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY++LM GLC      +A EL + M S    PN+ TYS LL+GLCK G L+EA+++L 
Sbjct: 296 TVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLT 355

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M+ + L+PD  LY  +I      GK + A     ++   GI P+       +R +N ++
Sbjct: 356 SMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPS-------VRTYNIMI 408

Query: 381 QGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
           +GL K    + A++++  M +     DS +Y+ +I  F +  D   + +++DE+V     
Sbjct: 409 KGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFS 468

Query: 440 PDEGTWSAVM 449
            D  T+  ++
Sbjct: 469 ADSSTFKMLL 478



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 187/371 (50%), Gaps = 9/371 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H++ T +++I+ L   +    A  +L ++ K         F ++  G     R  +A
Sbjct: 116 GVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEA 175

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F++M      P   ++  ++ +L ++  +  A   +  M E G++P + + N L+  
Sbjct: 176 VELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNG 235

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C      DA+ K+F  M  +GC P  ++Y  LING C+  +I EAK L  +M  K   P
Sbjct: 236 YCLRLEMNDAS-KVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIP 294

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY +L+ GLC + S+ EA  LF++M S G+ PN+ TYS L+DGLCK G   +A++LL
Sbjct: 295 NTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLL 354

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  ++  P+IV Y+ L+ G+   GKL+ A E+  ++   G++P    Y  +I      
Sbjct: 355 TSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKE 414

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           G   EA     +M   G  P+  ++       N ++QG  +  DP+ A Q+   M  R  
Sbjct: 415 GLSDEAYKLFRKMEDDGFLPDSCSY-------NVIIQGFLQNQDPSTAIQLIDEMVGRRF 467

Query: 404 SVDSLTYSSLI 414
           S DS T+  L+
Sbjct: 468 SADSSTFKMLL 478



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 179/364 (49%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DAM  F +M      P+       L  + ++ Q          M   G+     +LN+LI
Sbjct: 69  DAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILI 128

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            +LC+ S  +  A  +  +M   G  PDS T+ TLINGLC  G+I EA ELF EM  +  
Sbjct: 129 NSLCRLS-HIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDA 187

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VT+T L++ LC+   V EA  +FE M  KGVEPN++TY++LM+G C     + A +
Sbjct: 188 MPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASK 247

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + ++M+ K   P++ +YS L+NG CK  ++ EA  +L +M  + L P+   Y  ++   C
Sbjct: 248 VFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLC 307

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
                 EA     +M   G+ PN  T+S+       ++ GLCK      A ++  SM+ R
Sbjct: 308 HASSLLEAQELFKKMCSSGMLPNLRTYSI-------LLDGLCKHGHLEEALKLLTSMQER 360

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D + Y+ LI      G +  +  +  +L  +G  P   T++ ++  L       +A
Sbjct: 361 KLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEA 420

Query: 462 AELL 465
            +L 
Sbjct: 421 YKLF 424



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 144/299 (48%), Gaps = 8/299 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N   +D A   F  M +    P     G  +  + +  +      L  +M+    +    
Sbjct: 63  NDIGIDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDY 122

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T   LIN LC+   +  A+ +  +M   G++P+  T+++L++GLC  G   +A+EL   M
Sbjct: 123 TLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEM 182

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
             +   PN VT++ L++ LCK+G + EA  + + M  +G++P+   Y  +++ +C   + 
Sbjct: 183 AGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEM 242

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            +A+   + MV  G  P+  ++S+       ++ G CK+   + A  +   M  + +  +
Sbjct: 243 NDASKVFEIMVGKGCAPSVHSYSI-------LINGYCKSRRIDEAKALLTQMSEKELIPN 295

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++TY++L+   C    + ++  +  ++   G LP+  T+S ++  L     + +A +LL
Sbjct: 296 TVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLL 354



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 1/214 (0%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  GY +  R  +A  +  +M E    P   +Y T++  L   + L  A   ++ M   G
Sbjct: 267 LINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSG 326

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           + P + + ++L+  LCK+ G ++ A K+   M  R   PD   Y  LI G+   GK+  A
Sbjct: 327 MLPNLRTYSILLDGLCKH-GHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVA 385

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           KELF ++      P+V TY  +I GL +    +EA +LF +M   G  P+  +Y+ ++ G
Sbjct: 386 KELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQG 445

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
             +    S A++L+  M+ +R   +  T+  LL+
Sbjct: 446 FLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLD 479



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 1/151 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+++   M+E   EP    Y  ++  +    +L++A   +  +   GI+P V + N++I
Sbjct: 349 EALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMI 408

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K L K  G  D A+K+FR+M + G  PDS +Y  +I G  +      A +L  EM  +  
Sbjct: 409 KGLLK-EGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRF 467

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           S    T+  L++     + +   MR   ++R
Sbjct: 468 SADSSTFKMLLDLESHDEIISRFMRESSQIR 498


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 217/433 (50%), Gaps = 27/433 (6%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           AL  F+ A A  ++ FRH    +    + L+S   F  A +++                 
Sbjct: 95  ALSFFNWAIA--SSKFRHFTRLYIACAASLISNKNFEKAHEVMQ---------------C 137

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + + +  + R  +A+ +  +M   G  P+ K+   V+ I+ E   ++ A   +  M   G
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARG 197

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           +QP   S  V++   CK    +++  +    M  RG   D+ T   ++   C  G +  A
Sbjct: 198 VQPNCVSYRVMVVGYCKLGNVLESD-RWLGGMIERGFVVDNATLSLIVREFCEKGFVTRA 256

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
              F+        P ++ +T +I GLC+  SV++A  + EEM  +G +PNV+T+++L+DG
Sbjct: 257 LWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDG 316

Query: 271 LCKGGCSSQAMEL-LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           LCK G + +A  L L+++ S+ H+PN++TY+ +++G C++ K+  A  +L RMK QGL P
Sbjct: 317 LCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAP 376

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
           +   Y  +I   C  G ++ A   ++ M   G +PN  T+       N +V GLCK    
Sbjct: 377 NTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTY-------NAIVDGLCKKGRV 429

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
             A++V  S     +  D +TY+ LI+  CK+ +I ++  + +++V  G  PD  +++ +
Sbjct: 430 QEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTL 489

Query: 449 MTALWDRRKMRQA 461
           +      ++M+++
Sbjct: 490 IAVFCREKRMKES 502



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 226/450 (50%), Gaps = 11/450 (2%)

Query: 15  SAQVLQ-LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           + +V+Q ++++  ++ +     +     +  G      T + ++  +        AE+L 
Sbjct: 131 AHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLF 190

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           D +           +  +  GY ++   L++ R    M E G      +   ++    E+
Sbjct: 191 DEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEK 250

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
             +  A  ++R   E+G++P + +   +I+ LCK  G++  AF++  EM  RG  P+ YT
Sbjct: 251 GFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKR-GSVKQAFEMLEEMVGRGWKPNVYT 309

Query: 194 YGTLINGLCRLGKIYEAKELF-KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +  LI+GLC+ G   +A  LF K + ++   P V+TYT++I+G C+ + +  A  L   M
Sbjct: 310 HTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRM 369

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           + +G+ PN  TY++L+DG CK G   +A EL+ +M  +   PN+ TY+ +++GLCK+G++
Sbjct: 370 KEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRV 429

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           QEA ++L      GL  D   Y  +IS  C   + ++A    ++MV  GI P+       
Sbjct: 430 QEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPD------- 482

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNR-SISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           I  + T++   C+    +  +++     R  +   + TY+S+I  +C++G++  + +   
Sbjct: 483 IHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFH 542

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +   GC  D  T+ A+++ L  + K+ +A
Sbjct: 543 RMSDHGCASDSITYGALISGLCKQSKLDEA 572



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 179/343 (52%), Gaps = 10/343 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+  F +  E G  P   ++  ++  L +   +K AF     M   G +P V +   LI 
Sbjct: 256 ALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALID 315

Query: 164 ALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            LCK  G  + AF++F ++  +    P+  TY  +I+G CR  K+  A+ L   M+ +  
Sbjct: 316 GLCKK-GWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGL 374

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P   TYT+LI+G C++ + E A  L   M  +G  PNV TY++++DGLCK G   +A +
Sbjct: 375 APNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYK 434

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +L+         + VTY+ L++  CK+ ++++A+ + ++M   G++PD   Y  +I+ FC
Sbjct: 435 VLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFC 494

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNR 401
              + +E+  F +E V  G+ P   T++       +++ G C+    R A + +  M + 
Sbjct: 495 REKRMKESEMFFEEAVRFGLVPTNKTYT-------SMICGYCREGNLRLALKFFHRMSDH 547

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             + DS+TY +LI+  CK+  + ++  + D ++  G  P E T
Sbjct: 548 GCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVT 590



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 148/306 (48%), Gaps = 44/306 (14%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++     +G++ EA E+  EM  +  +P+  T   ++  + +   VE A  LF+EM ++G
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARG 197

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH------------------------ 292
           V+PN  +Y  ++ G CK G   ++   L  MI +                          
Sbjct: 198 VQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRAL 257

Query: 293 -----------RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
                      RPN++ ++ ++ GLCK G +++A E+L+ M  +G KP+   +  +I   
Sbjct: 258 WYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGL 317

Query: 342 CDIGKYQEAANFLDEMVLG-GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           C  G  ++A     ++V      PN LT++        ++ G C+ +  NRA  +   M+
Sbjct: 318 CKKGWTEKAFRLFLKLVRSENHKPNVLTYT-------AMISGYCRDEKMNRAEMLLSRMK 370

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            + ++ ++ TY++LI   CK G+  ++  +++ +  +G  P+  T++A++  L  + +++
Sbjct: 371 EQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQ 430

Query: 460 QAAELL 465
           +A ++L
Sbjct: 431 EAYKVL 436



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 1/272 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MIS      +   AE LL R+ ++      + + ++  G+ +      A  + + M
Sbjct: 345 TYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVM 404

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E G  P   +Y  ++  L ++ +++ A++  +     G+     +  +LI   CK +  
Sbjct: 405 NEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQA-E 463

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A  +F +M   G  PD ++Y TLI   CR  ++ E++  F+E       PT  TYTS
Sbjct: 464 IKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTS 523

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I G C+  ++  A++ F  M   G   +  TY +L+ GLCK     +A  L   MI K 
Sbjct: 524 MICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKG 583

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
             P  VT  TL    CK      A+ +L+R++
Sbjct: 584 LTPCEVTRVTLAYEYCKIDDGCSAMVVLERLE 615



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 130/280 (46%), Gaps = 8/280 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   + +T++ +I     A  F  A +L++ +N+E        + +I  G  +  R  +A
Sbjct: 373 GLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEA 432

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            +V       G +    +Y  +++   ++ ++K A   +  M + GIQP + S   LI  
Sbjct: 433 YKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAV 492

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+    M  +   F E    G  P + TY ++I G CR G +  A + F  M    C+ 
Sbjct: 493 FCREK-RMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCAS 551

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK--GGCSSQAME 282
             +TY +LI+GLC+   ++EA  L++ M  KG+ P   T  +L    CK   GCS  AM 
Sbjct: 552 DSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCS--AMV 609

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           +L+ +  K     + T +TL+  LC E K+  A     ++
Sbjct: 610 VLERLEKKLW---VRTVNTLVRKLCSERKVGMAALFFHKL 646



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 4/227 (1%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           + NG   D  T++++IS+     + + A  L +++ K         + ++   + R  R 
Sbjct: 440 FRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRM 499

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            ++   F++   FG  PT K+Y +++     E  L+LA +F+  M + G      +   L
Sbjct: 500 KESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGAL 559

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I  LCK S  +D A  ++  M  +G TP   T  TL    C++     A  + + +E K 
Sbjct: 560 ISGLCKQS-KLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKL 618

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
              TV T   L+  LC  + V  A   F ++  K    N  T ++ M
Sbjct: 619 WVRTVNT---LVRKLCSERKVGMAALFFHKLLDKDPNVNRVTIAAFM 662


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 211/439 (48%), Gaps = 28/439 (6%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVN-----------------KEKCDITEDIFL 89
           +H   +   MI  L    QF+ A++LL+R+                   +  D    I  
Sbjct: 72  KHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILS 131

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            +   Y       DA++VF+ M+  G +P   +   +L  L +     + ++ Y+ M  +
Sbjct: 132 WLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRV 191

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G+ P +   NVLI A CK SG ++ A ++  EM +R   PD +TY TLI+  C+ G  YE
Sbjct: 192 GVVPNIHIFNVLIHACCK-SGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYE 250

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  +   ME    SP +VTY SLI G C+   + EA+RLF E+   G  PN  TY++L+D
Sbjct: 251 ALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLID 308

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G C+     +A+ L ++M  +   P +VTY+++L  LC+EGK+++A  +L+ M  + ++P
Sbjct: 309 GYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEP 368

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDP 388
           D      +I+ +C IG    A     +M+  G+ P++ T+         ++ G CK  + 
Sbjct: 369 DNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFK-------ALIHGFCKLHEV 421

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           + A +    M +   S    TYS L+  +  + +     R+ DEL   G   D   + A+
Sbjct: 422 DSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRAL 481

Query: 449 MTALWDRRKMRQAAELLLL 467
           +  L    K+  A  +  L
Sbjct: 482 IRRLCKIDKIESAERIFTL 500



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 147/311 (47%), Gaps = 7/311 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D  T++ +IS          A  + DR+  E+  ++ DI  + S+  G+ R  R  +A+R
Sbjct: 231 DLFTYNTLISLYCKKGMHYEALGIQDRM--ERGGVSPDIVTYNSLIYGFCREGRMREALR 288

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +F ++   G  P   +Y T++      N L+ A R    M   G+ P V + N +++ LC
Sbjct: 289 LFREIN--GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLC 346

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           +  G +  A ++  EM  R   PD+ T  TLIN  C++G +  A ++ K+M      P  
Sbjct: 347 E-EGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQ 405

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T+ +LI+G C+   V+ A     EM   G  P+  TYS L+D           + L   
Sbjct: 406 FTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDE 465

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +  K    +I  Y  L+  LCK  K++ A  I   M+ +G+K D+ +Y  +   +   GK
Sbjct: 466 LSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGK 525

Query: 347 YQEAANFLDEM 357
              A++ LDEM
Sbjct: 526 AIAASDMLDEM 536



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 13/309 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I       + R A  L   +N    +     + ++  GY RV+   +A
Sbjct: 262 GVSPDIVTYNSLIYGFCREGRMREALRLFREINGATPN--HVTYTTLIDGYCRVNDLEEA 319

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+ + M+  G  P   +Y ++L  L EE ++K A R    M E  ++P   + N LI A
Sbjct: 320 LRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINA 379

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M +A K+ ++M   G  PD +T+  LI+G C+L ++  AKE   EM     SP
Sbjct: 380 YCK-IGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSP 438

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           +  TY+ L++      + E  +RL +E+  KG+  ++  Y +L+  LCK      A  + 
Sbjct: 439 SYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIF 498

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY---------- 334
            +M  K  + + V Y++L     K GK   A ++LD M  + L     +Y          
Sbjct: 499 TLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGD 558

Query: 335 GKIISCFCD 343
           G I+  F D
Sbjct: 559 GSILGLFWD 567


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 221/486 (45%), Gaps = 74/486 (15%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVH 99
           A  F  D   ++ M+S L  A+ F  A D+L R+    C    +T  I LS C   G++ 
Sbjct: 272 AEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLG 331

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R     R+   M   GC P  + + +++    +      A++ ++ M + G QP     N
Sbjct: 332 R---CKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYN 388

Query: 160 VLIKALCKN----------------------------------------SGTMDAAFKIF 179
           + I ++C N                                        +G  D AFKI 
Sbjct: 389 IFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKII 448

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
            EM  +G  PD  TY  +I  LC   K+ +A  LF+EM+     P+V TYT LI+  C++
Sbjct: 449 CEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKA 508

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A + F+EM  KG  PNV TY++L+    K      A EL +MM+ +  +PN+VTY
Sbjct: 509 GLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTY 568

Query: 300 STLLNGLCKEGKLQEAVEILDRMK------------------LQGLKPDAGLYGKIISCF 341
           + L++G CK G++++A +I  RM+                   +G  P+   YG ++   
Sbjct: 569 TALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEG--PNVITYGALVDGL 626

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C   + +EA   LD M+  G  PN++       +++ V+ G CK      A +V+  M  
Sbjct: 627 CKANRVKEAHELLDTMLAHGCEPNQI-------VYDAVIDGFCKIGKLQDAQEVFTKMSE 679

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R  S +  TYSS I C  K   +    +++ +++ + C P+   ++ ++  L    K  +
Sbjct: 680 RGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDE 739

Query: 461 AAELLL 466
           A +L+L
Sbjct: 740 AYKLML 745



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 195/435 (44%), Gaps = 46/435 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             GF  D+ST+S +I  L  A++   A  L + + +     +   +  +   + +     
Sbjct: 453 GKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQ 512

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A + FD+M   GC P   +Y  ++   ++  Q+ +A   +  M   G +P V +   LI
Sbjct: 513 QARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALI 572

Query: 163 KALCKNSGTMDAAFKIFREM---------------PNRGCT-PDSYTYGTLINGLCRLGK 206
              CK +G ++ A +I+  M                +  C  P+  TYG L++GLC+  +
Sbjct: 573 DGHCK-AGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANR 631

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + EA EL   M    C P  + Y ++I+G C+   +++A  +F +M  +G  PN++TYSS
Sbjct: 632 VKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSS 691

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            +D L K       +++L  M+     PN+V Y+ +++GLCK GK  EA +++ +M+ +G
Sbjct: 692 FIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKG 751

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT------------------ 368
             P+   Y  +I  F   GK ++      +M   G  PN +T                  
Sbjct: 752 CNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAY 811

Query: 369 ----------WSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
                     W  HI  H  +++G  +        +     N S+ VDSL Y  LI  + 
Sbjct: 812 KLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENESVPVDSL-YRILIDNYI 870

Query: 419 KKGDIHKSARIVDEL 433
           K G +  +  +++E+
Sbjct: 871 KAGRLEVALDLLEEI 885



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 175/378 (46%), Gaps = 19/378 (5%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+    ++K+FG +P+  +Y  ++ + +  ++L  A+   R M          +L+    
Sbjct: 195 ALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAY 254

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK  G    AF +  E  +    PD+  Y  +++GLC      EA ++   M + +C 
Sbjct: 255 SLCK-GGKCREAFDLIDEAEDF--VPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCI 311

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY  L++G  +   +    R+   M ++G  PN   ++SL+   CK    S A +L
Sbjct: 312 PNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKL 371

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLY------GK 336
            + MI    +P  + Y+  +  +C   + Q + +ILD + K      D G+         
Sbjct: 372 FKKMIKCGCQPGYLVYNIFIGSVCSNEE-QPSSDILDLVEKAYSEMLDLGVVLNKVNVSN 430

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
              C C  GK+ +A   + EM+  G  P+  T+S        V+  LC      +AF ++
Sbjct: 431 FARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYS-------KVIGFLCDASKVEKAFSLF 483

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M+   I     TY+ LI  FCK G I ++ +  DE++  GC P+  T++A++ A    
Sbjct: 484 EEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKA 543

Query: 456 RKMRQAAELLLLELMNKC 473
           ++M  A EL  + L+  C
Sbjct: 544 KQMPVADELFEMMLLEGC 561



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 161/315 (51%), Gaps = 9/315 (2%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  G  + +R  +A  + D M   GCEP    Y  V+    +  +L+ A   +  M E 
Sbjct: 621 ALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSER 680

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P + + +  I  L K++  +D   K+  +M    CTP+   Y  +++GLC++GK  E
Sbjct: 681 GYSPNLYTYSSFIDCLFKDN-RLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDE 739

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +L  +ME K C+P VVTYT++I+G  +S  +E+ + LF +M SKG  PN  TY  L++
Sbjct: 740 AYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLIN 799

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
             C  G   +A +LL  M       +I+++  ++ G  +E     ++ +LD +      P
Sbjct: 800 HCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQE--FITSIGLLDELSENESVP 857

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
              LY  +I  +   G+ + A + L+E+     +P+    + +  ++ ++++ L      
Sbjct: 858 VDSLYRILIDNYIKAGRLEVALDLLEEI---SSSPSHAVSNKY--LYASLIENLSHASKV 912

Query: 389 NRAFQVYLSMRNRSI 403
           ++A ++Y SM ++++
Sbjct: 913 DKALELYASMISKNV 927



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 140/340 (41%), Gaps = 69/340 (20%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  ++  L  AN+ + A +LLD +    C+  + ++ ++  G+ ++ +  DA  VF KM
Sbjct: 618 TYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKM 677

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---- 167
            E G  P   +Y + +  L ++N+L L  +    M E    P V     ++  LCK    
Sbjct: 678 SERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKT 737

Query: 168 ------------------------------NSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                                          SG ++   ++FR+M ++GC P+  TY  L
Sbjct: 738 DEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVL 797

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ------------------- 238
           IN  C  G + EA +L  EM+       ++++  +I G  Q                   
Sbjct: 798 INHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENESVP 857

Query: 239 --------------SKSVEEAMRLFEEMRSKGVEP--NVFTYSSLMDGLCKGGCSSQAME 282
                         +  +E A+ L EE+ S       N + Y+SL++ L       +A+E
Sbjct: 858 VDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALE 917

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           L   MISK   P +     L+ GL K  K QEA+++ D +
Sbjct: 918 LYASMISKNVVPELSILVHLIKGLIKVDKWQEALQLSDSI 957



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 126/309 (40%), Gaps = 47/309 (15%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L+   CR G    A E    ++     P+  TY +LI    ++  ++ A  +  EM S  
Sbjct: 182 LVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYA 241

Query: 257 VEPNVFTYSSLMDGLCKGG-----------------------------CSS----QAMEL 283
              + +T S     LCKGG                             C +    +AM++
Sbjct: 242 FVMDRYTLSCFAYSLCKGGKCREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDI 301

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M S    PN+VTY  LL+G  ++G+L     IL  M  +G  P+  ++  +I  +C 
Sbjct: 302 LHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCK 361

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV-------YL 396
              Y  A     +M+  G  P  L       ++N  +  +C  +   +  +       Y 
Sbjct: 362 SRDYSYAYKLFKKMIKCGCQPGYL-------VYNIFIGSVCSNEEQPSSDILDLVEKAYS 414

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M +  + ++ +  S+   C C  G   ++ +I+ E++  G +PD+ T+S V+  L D  
Sbjct: 415 EMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDAS 474

Query: 457 KMRQAAELL 465
           K+ +A  L 
Sbjct: 475 KVEKAFSLF 483


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 205/397 (51%), Gaps = 14/397 (3%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPLDAMRVFDKMKEF 114
           I  LV AN+   A   L+R+  +   IT ++    C  +GY  +++   AM +  +M   
Sbjct: 213 IHVLVMANKLEKALRFLERM--QLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFK 270

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMD 173
           GC P   SY TV+  L ++ ++K        M ++  + P   + N L+  L K+ G  D
Sbjct: 271 GCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKH-GHAD 329

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
            A +  RE   RG   D   Y  ++N  C  G++  AKE+  EM TK CSP VVTYT+++
Sbjct: 330 EALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVV 389

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           NGLC+   VEEA ++ ++M   G +PN  +Y++L++GLC+ G S +A E++         
Sbjct: 390 NGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWT 449

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN +TYS +++GL +EGKL EA +++  M  +G  P       +I   C   K  EA  F
Sbjct: 450 PNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKF 509

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
           ++E +  G   N + ++       TV+ G C++D  + A  +   M   +   D++T+++
Sbjct: 510 MEECLNRGCAVNAVNFT-------TVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTA 562

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +I    KKG I ++     +++  G  P   T+ AV+
Sbjct: 563 IIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVI 599



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/477 (26%), Positives = 236/477 (49%), Gaps = 37/477 (7%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           QV  +++ + D   AL  F  A  ++   +RHD   + +M+  L      + A  +L  +
Sbjct: 105 QVCAVLQLQSDERIALDFFYWAGRQWR--YRHDPIVYYMMLQVLSKTKLCQGARRVLRLM 162

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
            +       + F  +   Y R  +  +AM+V   M++ G EP      T + +LV  N+L
Sbjct: 163 VRRGIARRPEAFAHVMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKL 222

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           + A RF   M+ +GI P V + N LIK  C +   ++ A ++  EMP +GC PD  +Y T
Sbjct: 223 EKALRFLERMQLVGITPNVVTYNCLIKGYC-DLYQVEHAMELIAEMPFKGCPPDKVSYYT 281

Query: 197 LINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           ++  LC+  +I E + L ++M +     P  VTY +L++ L +    +EA+    E   +
Sbjct: 282 VMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEER 341

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G + +   YS++++  C  G   +A E++  MI+K   P++VTY+ ++NGLCK GK++EA
Sbjct: 342 GFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEA 401

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
            ++L +M   G KP+   Y  +++  C  G   EA   ++       TPN +T+S  + +
Sbjct: 402 KKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYS--VVM 459

Query: 376 H------------------------------NTVVQGLC-KTDPNRAFQVYLSMRNRSIS 404
           H                              N +++ LC +   N A +      NR  +
Sbjct: 460 HGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCA 519

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           V+++ ++++I  FC+  +I  +  ++D++ L+   PD  T++A++ AL  + ++ +A
Sbjct: 520 VNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEA 576



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 196/431 (45%), Gaps = 25/431 (5%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHR 100
           N    D  T++ ++  L        A + L    +    + +  + +I   +   GR+ R
Sbjct: 306 NKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDR 365

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A  + ++M   GC P   +Y  V+  L +  +++ A +  + M + G +P   S   
Sbjct: 366 ---AKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTA 422

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRG----CTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           L+  LC++  +++A     REM N       TP++ TY  +++GL R GK+ EA ++ +E
Sbjct: 423 LLNGLCQHGNSLEA-----REMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVRE 477

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M TK   PT V    LI  LC  + + EA +  EE  ++G   N   +++++ G C+   
Sbjct: 478 MLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDN 537

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
              A+ LL  M      P+ VT++ +++ L K+G+++EA     +M  +GL P    Y  
Sbjct: 538 IDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRA 597

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVY 395
           +I  +C +G+ +E    L +M         L+ S     +N V++ LC   +P  A +V 
Sbjct: 598 VIHQYCKMGRVEELIKLLGKM---------LSRSKCRTAYNQVIEKLCNFGNPEAADKVV 648

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             +   +  +D+ T   L+  +  KG    + ++   +     +PD      +   L   
Sbjct: 649 GLVLRTASRIDANTCHMLMESYLSKGIPLSAYKVACRMFDRNLIPDLKLCEKLSKKLVLE 708

Query: 456 RKMRQAAELLL 466
            K+ +A  L+L
Sbjct: 709 GKLEEADNLML 719



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 146/299 (48%), Gaps = 9/299 (3%)

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G +  A ++   M   G  P+     T I+ L    K+ +A    + M+    +P VVT
Sbjct: 184 AGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVT 243

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  LI G C    VE AM L  EM  KG  P+  +Y ++M  LC+     +   L++ M+
Sbjct: 244 YNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMV 303

Query: 289 -SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
              +  P+ VTY+TL++ L K G   EA+E L   + +G + D   Y  I++ FC  G+ 
Sbjct: 304 KDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRM 363

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
             A   ++EM+  G +P+ +T++        VV GLCK      A ++   M       +
Sbjct: 364 DRAKEIVNEMITKGCSPDVVTYT-------AVVNGLCKVGKVEEAKKMLQQMYKHGCKPN 416

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++Y++L+   C+ G+  ++  +++    D   P+  T+S VM  L    K+ +A +++
Sbjct: 417 TVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVV 475



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 139/279 (49%), Gaps = 11/279 (3%)

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+++ +  ++    R GK+  A ++   M+     P ++   + I+ L  +  +E+A+R 
Sbjct: 171 PEAFAH--VMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRF 228

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            E M+  G+ PNV TY+ L+ G C       AMEL+  M  K   P+ V+Y T++  LC+
Sbjct: 229 LERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQ 288

Query: 309 EGKLQEAVEILDRM-KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           + +++E   ++++M K   L PD   Y  ++      G   EA  FL E    G   +++
Sbjct: 289 DKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKV 348

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
            +S        +V   C +   +RA ++   M  +  S D +TY++++   CK G + ++
Sbjct: 349 GYS-------AIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEA 401

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +++ ++   GC P+  +++A++  L       +A E++
Sbjct: 402 KKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMM 440



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 151/357 (42%), Gaps = 39/357 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +++ L    +   A+ +L ++ K  C      + ++  G  +    L+A
Sbjct: 377 GCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEA 436

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + +  +E    P   +Y  V+  L  E +L  A    R M   G  P    +N+LIK+
Sbjct: 437 REMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKS 496

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC     M+ A K   E  NRGC  ++  + T+I+G C+   I  A  L  +M      P
Sbjct: 497 LCLEQ-KMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHP 555

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT+T++I+ L +   +EEA     +M  KG++P   TY +++   CK G   + ++LL
Sbjct: 556 DAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLL 615

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD------------------------ 320
             M+S+        Y+ ++  LC  G  + A +++                         
Sbjct: 616 GKMLSRSKCR--TAYNQVIEKLCNFGNPEAADKVVGLVLRTASRIDANTCHMLMESYLSK 673

Query: 321 -----------RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL-GGITPN 365
                      RM  + L PD  L  K+       GK +EA N + + V  G I+P+
Sbjct: 674 GIPLSAYKVACRMFDRNLIPDLKLCEKLSKKLVLEGKLEEADNLMLQFVQRGNISPD 730


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 215/429 (50%), Gaps = 17/429 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLL-DRVNKEKCDITEDI--FLSICRGYGRVHR 100
           +G+R +N   + ++  L  A +   A D+L  R+ +  C  T D+  + ++ +G+    R
Sbjct: 123 SGWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGC--TPDVVSYNTLLKGFCNEKR 180

Query: 101 PLDAMRVFDKMKEF---GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
             +A+ +   M +     C P   SY  V+     E Q+  A+  +  M + GIQP V +
Sbjct: 181 AEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVT 240

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
              +I  LCK +  +D A  +F++M ++G  PD+ TY  LI+G   +GK  E   + +EM
Sbjct: 241 YTTVIDGLCK-AQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEM 299

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P   TY SL+N LC +    EA  LF+ M  KG++PNV  Y  L+ G    G  
Sbjct: 300 SAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGAL 359

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           S+  +LL +M+     P+   ++ +     K+  + EA+ I ++MK QGL PD   YG +
Sbjct: 360 SEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGAL 419

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I   C +G+  +A    ++M+  G+ PN       I + N++V GLC  D   +A + Y 
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVAPN-------IFVFNSLVYGLCTVDKWEKAKEFYF 472

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M N+ I  D + +++++   C KG + K+ R++D +   G  P   +++ ++       
Sbjct: 473 EMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVG 532

Query: 457 KMRQAAELL 465
           ++ +AA+ L
Sbjct: 533 RIDEAAKSL 541



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 191/397 (48%), Gaps = 33/397 (8%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P P +Y  ++       +L+  F  +  + + G +     +N L+K LC      +A   
Sbjct: 92  PDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDI 151

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM---ETKACSPTVVTYTSLIN 234
           + + MP  GCTPD  +Y TL+ G C   +  EA EL   M   + ++C P VV+Y  +IN
Sbjct: 152 LVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVIN 211

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G      V++A  LF EM  +G++PNV TY++++DGLCK     +A  + Q MI K  +P
Sbjct: 212 GFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKP 271

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           +  TY+ L++G    GK +E V +L+ M   GLKPD   YG +++  C+ G+ +EA    
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLF 331

Query: 355 DEMVLGGITPNRLTWSLHIRIHNT--------------VVQGLC---------------K 385
           D M+  GI PN   + + I  + T              V  GL                K
Sbjct: 332 DSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKK 391

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              + A  ++  M+ + +S D + Y +LI   CK G +  +    ++++ +G  P+   +
Sbjct: 392 AMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVF 451

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           ++++  L    K  +A E    E++N+ +  +V   N
Sbjct: 452 NSLVYGLCTVDKWEKAKE-FYFEMLNQGIRPDVVFFN 487



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 211/454 (46%), Gaps = 38/454 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN----KEKCDITEDIFLSICRGYGRVHR 100
           G + DN T++ +I   +S  +++    +L+ ++    K  C     +   +C   GR   
Sbjct: 268 GVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNN-GRCR- 325

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A  +FD M   G +P    Y  ++     +  L         M E G+ P     N+
Sbjct: 326 --EARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNI 383

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +  A  K +  +D A  IF +M  +G +PD   YG LI+ LC+LG++ +A   F +M  +
Sbjct: 384 IFTAYAKKA-MIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNE 442

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +P +  + SL+ GLC     E+A   + EM ++G+ P+V  +++++  LC  G   +A
Sbjct: 443 GVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKA 502

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             L+ +M     RP +++Y+TL+ G C  G++ EA + LD M   GLKPD   Y  ++  
Sbjct: 503 QRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHG 562

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWS--LH-------------------------- 372
           +C  G+  +A     EM+  GITP  +T+S  LH                          
Sbjct: 563 YCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWN 622

Query: 373 IRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           I I+N ++ GL K +  + AF+++ S+ ++   ++  T++ +I    K G    +  +  
Sbjct: 623 IWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFA 682

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +   G +PD  T+  +   L +   + +  +L 
Sbjct: 683 TISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLF 716



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 187/403 (46%), Gaps = 12/403 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++A+ IF+    +   G   D   +  +I  L    +   A    +++  E       +
Sbjct: 394 IDEAMHIFNKMKQQ---GLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFV 450

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F S+  G   V +   A   + +M   G  P    + T+L  L  + Q+  A R    M 
Sbjct: 451 FNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLME 510

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +G +P V S   LI   C   G +D A K    M + G  PD +TY TL++G CR G+I
Sbjct: 511 RVGTRPGVISYTTLIGGHCL-VGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRI 569

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  +F+EM     +P VVTY+++++GL  ++   EA  L+  M + G + N++ Y+ +
Sbjct: 570 DDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNII 629

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++GL K  C  +A +L Q + SK  +  I T++ ++  L K G+ ++A+ +   +   GL
Sbjct: 630 LNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGL 689

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KT 386
            PD   Y  I     + G  +E  +    M   G TPN        R+ N +V+ L  + 
Sbjct: 690 VPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNS-------RMLNALVRRLLHRG 742

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
           D  RA      +  ++ S+++ T + LI+   +    H +  +
Sbjct: 743 DITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHATSL 785



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 135/322 (41%), Gaps = 58/322 (18%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQ-------SKSVEEAMRLFEEMRSK---GVE 258
           +A +LF  + T A   +V+ +  L+  + +       +   E  + LF  M  +    V 
Sbjct: 32  DALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVT 91

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P+  TYS L+   C+ G          +++    R N +  + LL GLC   +L EA++I
Sbjct: 92  PDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDI 151

Query: 319 L-DRMKLQGLKPDAGLYGKIISCFCD---------------------------------- 343
           L  RM   G  PD   Y  ++  FC+                                  
Sbjct: 152 LVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVIN 211

Query: 344 ----IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSM 398
                G+  +A N   EM+  GI PN +T++       TV+ GLCK    +RA  V+  M
Sbjct: 212 GFFTEGQVDKAYNLFLEMMDRGIQPNVVTYT-------TVIDGLCKAQVVDRAEGVFQQM 264

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
            ++ +  D+ TY+ LI  +   G   +  R+++E+   G  PD  T+ +++  L +  + 
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC 324

Query: 459 RQAAELLLLELMNKCVEAEVDI 480
           R+ A  L   ++ K ++  V I
Sbjct: 325 RE-ARFLFDSMIRKGIKPNVAI 345



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 1/235 (0%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  GY R  R  DA  VF +M   G  P   +Y T+L  L    +   A   Y +M   
Sbjct: 558 TLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITS 617

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G Q  +   N+++  L KN+  +D AFK+F+ + ++    +  T+  +I  L + G+  +
Sbjct: 618 GKQWNIWIYNIILNGLSKNN-CVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNED 676

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  LF  + +    P V TY  +   L +   +EE   LF  M   G  PN    ++L+ 
Sbjct: 677 AMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVR 736

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            L   G  ++A   L  +  K       T + L++ L ++     A  + ++ ++
Sbjct: 737 RLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPEKYRV 791


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 199/369 (53%), Gaps = 16/369 (4%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEE-NQLKLAFR------FYRHMREIGIQPCVA 156
           A ++FDKM  +G   +  S    ++ L E+ + +K+A +          M+  G++P   
Sbjct: 165 ARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPY 224

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N +I  LCK +G +  A ++ REM + G  PD   Y TLI+G C+LG +  A  LF E
Sbjct: 225 TYNGVILLLCK-TGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDE 283

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M+ +  SP  +TYT++I GLCQ+  V EA +LF EM  K +EP+  TY++L+DG CK G 
Sbjct: 284 MQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK 343

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A  L   M+     PNIVTY+ L +GLCK G++  A E+L  M  +GL+ +   Y  
Sbjct: 344 MKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNS 403

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395
           +++  C  G   +A   + +M + G  P+ +T++       T++   CK+ +  RA ++ 
Sbjct: 404 LVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYT-------TLMDAYCKSREMVRAHELL 456

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M +R +    +T++ L+  FC  G +    +++  ++  G +P+  T+++++     R
Sbjct: 457 RQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIR 516

Query: 456 RKMRQAAEL 464
             MR   E+
Sbjct: 517 NNMRATTEI 525



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 217/439 (49%), Gaps = 10/439 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ +I  L    +   AE +L  +  E       I+ ++  G+ ++     A
Sbjct: 218 GLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSA 277

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+FD+M++    P   +Y  V+  L +  ++  A + +  M    ++P   +   LI  
Sbjct: 278 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 337

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M  AF +  +M   G TP+  TY  L +GLC+ G++  A EL  EM  K    
Sbjct: 338 YCK-EGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLEL 396

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            + TY SL+NGLC++ ++++A++L ++M   G  P+  TY++LMD  CK     +A ELL
Sbjct: 397 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 456

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+ +  +P +VT++ L+NG C  G L++  ++L  M  +G+ P+A  Y  +I  +C  
Sbjct: 457 RQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIR 516

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
              +        M   G+ P+  T+       N +++G CK  +   A+ ++  M  +  
Sbjct: 517 NNMRATTEIYRGMCAKGVVPDGNTY-------NILIKGHCKARNMKEAWFLHRDMVGKGF 569

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           ++   +Y++LI  F K+    ++  + +++  +G + D   ++      +D  KM    E
Sbjct: 570 NLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLE 629

Query: 464 LLLLELMNKCVEAEVDIQN 482
            L  E + KC+  ++  +N
Sbjct: 630 -LCDEAIEKCLVGDIQTKN 647


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 192/368 (52%), Gaps = 13/368 (3%)

Query: 103 DAMRVFDKMKEF----GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           DAM +  K++EF    G  P   +Y T++    +  +   A +    MRE G      + 
Sbjct: 223 DAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTY 282

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           NVLI  LC+ SG ++ AF   ++M + G  PD +TYG LINGLC+  +  EAK L  EM 
Sbjct: 283 NVLIAGLCR-SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 341

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P VV Y +LI+G  +  + +EA ++ +EM + GV+PN  TY +L+ GLCK G   
Sbjct: 342 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMD 401

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A  LL+ M+   HRP+ +TY+ ++ G  +    ++A  +L  M+  G+ P+   Y  +I
Sbjct: 402 RASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMI 461

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
              C  G+ ++A++ L+EM   G+ PN   ++        ++ G C+  + + A +++  
Sbjct: 462 HGLCQSGEPEKASDLLEEMTTKGLKPNAFVYA-------PLISGYCREGNVSLACEIFDK 514

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M   ++  D   Y+SLI    K G + +S +   ++   G LP+E T+S ++        
Sbjct: 515 MTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGD 574

Query: 458 MRQAAELL 465
           +  A +L+
Sbjct: 575 LESAEQLV 582



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 193/368 (52%), Gaps = 12/368 (3%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           D+ +   +  GRV    DA  V   M++ G  P+ +    +L  L+  + + L ++    
Sbjct: 178 DVLVDTYKKSGRVQ---DAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREF 234

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   GI P V + + LI+A CK     D A K+  EM  RGC  ++ TY  LI GLCR G
Sbjct: 235 MVGAGISPDVYTYSTLIEAYCKVR-EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSG 293

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + EA    K+ME     P   TY +LINGLC+S+   EA  L +EM    ++PNV  Y+
Sbjct: 294 AVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYA 353

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG  + G + +A ++++ M++   +PN +TY  L+ GLCK G++  A  +L +M   
Sbjct: 354 NLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRD 413

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
             +PD   Y  II         ++A   L EM   GI+PN  T+S+       ++ GLC+
Sbjct: 414 SHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI-------MIHGLCQ 466

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           + +P +A  +   M  + +  ++  Y+ LI+ +C++G++  +  I D++     LPD   
Sbjct: 467 SGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYC 526

Query: 445 WSAVMTAL 452
           +++++  L
Sbjct: 527 YNSLIFGL 534



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 213/461 (46%), Gaps = 66/461 (14%)

Query: 83  ITEDIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           I+ D++   ++   Y +V     A +V  +M+E GC     +Y  ++A L     ++ AF
Sbjct: 240 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 299

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKN-------------------------------- 168
            F + M + G+ P   +   LI  LCK+                                
Sbjct: 300 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 359

Query: 169 --SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
              G  D AFK+ +EM   G  P+  TY  L+ GLC++G++  A  L K+M   +  P  
Sbjct: 360 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 419

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           +TY  +I G  +  S ++A RL  EM + G+ PNV+TYS ++ GLC+ G   +A +LL+ 
Sbjct: 420 ITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEE 479

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M +K  +PN   Y+ L++G C+EG +  A EI D+M    + PD   Y  +I     +G+
Sbjct: 480 MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGR 539

Query: 347 YQEAANFLDEMVLGGITPNRLTWS--LHIRIHN-------TVVQGLCKTD--PNRAFQVY 395
            +E+  +  +M   G+ PN  T+S  +H  + N        +VQ +  T   PN    + 
Sbjct: 540 VEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID 599

Query: 396 L------------------SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           L                  SM ++ + +D+  Y  LI      G++  + R++  +  +G
Sbjct: 600 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNG 659

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            +PD   +S++++ L  +   R+ A  +L E+  K V+  +
Sbjct: 660 SVPDVHVYSSLISGLC-KTADREKAFGILDEMSKKGVDPNI 699



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 194/425 (45%), Gaps = 45/425 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T+S+MI  L  + +   A DLL+ +  +       ++  +  GY R      A
Sbjct: 449 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 508

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FDKM +    P    Y +++  L +  +++ + +++  M+E G+ P   + + LI  
Sbjct: 509 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 568

Query: 165 LCKNSGTMDAA--------------------------FK---------IFREMPNRGCTP 189
             KN G +++A                          FK          F+ M ++G   
Sbjct: 569 YLKN-GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVML 627

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+  YG LI+ L   G +  A  +   +E     P V  Y+SLI+GLC++   E+A  + 
Sbjct: 628 DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 687

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM  KGV+PN+  Y++L+DGLCK G  S A  +   +++K   PN VTY++L++G CK 
Sbjct: 688 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 747

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G +  A  + + M   G+ PDA +Y  + +     G  ++A   ++EM L G        
Sbjct: 748 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-------- 799

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
              I   N +V G CK        ++   +  R +  ++LT  ++I+   + G + +   
Sbjct: 800 HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHT 859

Query: 429 IVDEL 433
           I  EL
Sbjct: 860 IFVEL 864



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 153/339 (45%), Gaps = 30/339 (8%)

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           A L+VL+    K SG +  A ++   M +RG  P       L+  L R   +    ++ +
Sbjct: 175 AVLDVLVDTY-KKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVRE 233

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            M     SP V TY++LI   C+ +  + A ++  EMR +G   N  TY+ L+ GLC+ G
Sbjct: 234 FMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSG 293

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A    + M      P+  TY  L+NGLCK  +  EA  +LD M    LKP+  +Y 
Sbjct: 294 AVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYA 353

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--------------------- 374
            +I  F   G   EA   + EMV  G+ PN++T+   +R                     
Sbjct: 354 NLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRD 413

Query: 375 -------IHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
                   +N +++G  +    + AF++   M N  IS +  TYS +I   C+ G+  K+
Sbjct: 414 SHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKA 473

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +++E+   G  P+   ++ +++       +  A E+ 
Sbjct: 474 SDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 512



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 181/442 (40%), Gaps = 58/442 (13%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T+S +I   +       AE L+ R+        + I++ +   Y +       
Sbjct: 554 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 613

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              F  M + G     + Y  ++  L     ++ AFR    + + G  P V   + LI  
Sbjct: 614 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISG 673

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +   + AF I  EM  +G  P+   Y  LI+GLC+ G I  A+ +F  +  K   P
Sbjct: 674 LCK-TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVP 732

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS------------------- 265
             VTYTSLI+G C+   +  A  L+ EM + G+ P+ F YS                   
Sbjct: 733 NCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLI 792

Query: 266 ---------------SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                          +L+DG CK G   + ++LL +++ +   PN +T   +++GL + G
Sbjct: 793 EEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAG 852

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           KL E   I   ++ +  +  A  +  +     + GK     + +D+M+        L  +
Sbjct: 853 KLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKI--PLDVVDDMIRDHCKEGNLDKA 910

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
           L +R  + +V                    +S  +   +Y +++   C+KG + ++  ++
Sbjct: 911 LMLR--DVIVA-------------------KSAPMGCSSYLAIVDNLCRKGKLSEALNLL 949

Query: 431 DELVLDGCLPDEGTWSAVMTAL 452
            E+   G  P E     ++T L
Sbjct: 950 KEMDKRGICPSENQCLILLTNL 971



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 128/331 (38%), Gaps = 53/331 (16%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D   +S +IS L        A  +LD ++K+  D     + ++  G  +      
Sbjct: 658 NGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISY 717

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP---------- 153
           A  VF+ +   G  P   +Y +++    +   +  AF  Y  M   GI P          
Sbjct: 718 ARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTT 777

Query: 154 ------------------------CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
                                    ++S N L+   CK  G M    K+   +  RG  P
Sbjct: 778 GCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKR-GKMQETLKLLHVIMGRGLVP 836

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL----------------- 232
           ++ T   +I+GL   GK+ E   +F E++ K        ++SL                 
Sbjct: 837 NALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDD 896

Query: 233 -INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            I   C+  ++++A+ L + + +K       +Y +++D LC+ G  S+A+ LL+ M  + 
Sbjct: 897 MIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 956

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
             P+      LL  L   G +QE   +LD M
Sbjct: 957 ICPSENQCLILLTNLHTSGYIQEHNTVLDNM 987


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 212/436 (48%), Gaps = 12/436 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++++AL I D   ++   G   ++ T + +I     ++Q   AE++L+ +      I + 
Sbjct: 376 NISEALKIRDDMLSK---GISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQG 432

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            F  +        R + A+    +M      P      T+++ L +  +   A   +  +
Sbjct: 433 SFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRL 492

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G  P + + N LI  LCK +G M    K+ R+M  RG   D  TY TLI+G C+ GK
Sbjct: 493 LGKGFVPNIVTSNALIHGLCK-AGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGK 551

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + E  EL +EM  K   P + T+  L++GLC +  ++EA RL+ E +  G  PNV+TY  
Sbjct: 552 VKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGV 611

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++DG CK     +   LL  ++SK+   N V Y++L+   C  G +  A  + D MK +G
Sbjct: 612 MIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRG 671

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           +      Y  ++   C+IG   +A + LDEM   G+ PN + ++       T++ G  K 
Sbjct: 672 VLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYT-------TIIGGYSKL 724

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              N+   V   M + +I  +  TY+ +I  FCK G   ++A++++E+   G LPD  T+
Sbjct: 725 GQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTY 784

Query: 446 SAVMTALWDRRKMRQA 461
           +A    L    K+ +A
Sbjct: 785 NAFTNGLCKEGKVEEA 800



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 225/478 (47%), Gaps = 65/478 (13%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T + ++S LV AN+ + + ++ D +          +F ++   + + HR  DA+ +F KM
Sbjct: 223 TCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKM 282

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           ++ G  P   +Y  ++  L +  +L  A+RF   M +  + P + + +V I  L K    
Sbjct: 283 EKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLE-K 341

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  + +EM   G  P+   Y TLI+G C++G I EA ++  +M +K  SP  VT  S
Sbjct: 342 IDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNS 401

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGV---------------------------------- 257
           LI G C+S  + +A  + EEM  +G+                                  
Sbjct: 402 LIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRN 461

Query: 258 -EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
             PN    ++L+ GLCK G   +A+EL   ++ K   PNIVT + L++GLCK G +QE +
Sbjct: 462 LRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETL 521

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL----- 371
           ++L  M  +GL  D   Y  +IS  C  GK +E     +EMV  GI P+  T++L     
Sbjct: 522 KLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGL 581

Query: 372 -----------------------HIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDS 407
                                  ++  +  ++ G CK +     +  L+ + ++ + ++S
Sbjct: 582 CNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNS 641

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + Y+SLI  +C  G+++ + R+ D++   G L    T+S++M  L +   +  A  LL
Sbjct: 642 VVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLL 699



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 202/390 (51%), Gaps = 30/390 (7%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VF  + + G  P+ K+   +L+ LV+ N+LK ++  Y  +   GI P V   + +I 
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A CK     D A  +F +M   G  P+  TY  +I+GLC+ G++ EA    ++M  +  S
Sbjct: 265 AFCKGHRE-DDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVS 323

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P+++TY+  INGL + + ++EA  + +EM   G  PN   Y++L+DG CK G  S+A+++
Sbjct: 324 PSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKI 383

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M+SK   PN VT ++L+ G CK  ++ +A  +L+ M  +GL  + G +  +I+  C 
Sbjct: 384 RDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCL 443

Query: 344 IGKYQEAANFLDEMVLGGITPN-------------------------RLT---WSLHIRI 375
             ++  A +F+ EM+L  + PN                         RL    +  +I  
Sbjct: 444 KFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVT 503

Query: 376 HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            N ++ GLCK  +     ++   M  R +  D +TY++LI+  CK+G + +   + +E+V
Sbjct: 504 SNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMV 563

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             G  PD  T++ ++  L +  K+ +A+ L
Sbjct: 564 KKGIQPDIYTFNLLLHGLCNADKIDEASRL 593



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 151/303 (49%), Gaps = 36/303 (11%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           + +++   M E G      +Y T+++   +E ++K  F     M + GIQP + + N+L+
Sbjct: 519 ETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLL 578

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE------ 216
             LC N+  +D A +++ E    G  P+ YTYG +I+G C+  K+ E + L  E      
Sbjct: 579 HGLC-NADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKL 637

Query: 217 -----------------------------METKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                                        M+++    +  TY+SL++GLC    V++A  
Sbjct: 638 ELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKH 697

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L +EMR +G+ PNV  Y++++ G  K G  ++   +LQ M S    PN  TY+ +++G C
Sbjct: 698 LLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFC 757

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K GK +EA ++L+ M  +G+ PDA  Y    +  C  GK +EA    DEM  G +  + +
Sbjct: 758 KLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEI 817

Query: 368 TWS 370
           T++
Sbjct: 818 TYT 820



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 150/296 (50%), Gaps = 5/296 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G   D  T++ +IS      + +   +L + + K+   I  DI  F  +  G     +  
Sbjct: 531 GLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKK--GIQPDIYTFNLLLHGLCNADKID 588

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A R++ + K+ G  P   +Y  ++    + N+++        +    ++      N LI
Sbjct: 589 EASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLI 648

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           +A C N G M+AAF++  +M +RG      TY +L++GLC +G + +AK L  EM  +  
Sbjct: 649 RAYCIN-GNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGL 707

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV YT++I G  +   + +   + +EM S  + PN FTY+ ++DG CK G + +A +
Sbjct: 708 LPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAK 767

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           LL  M  K   P+ VTY+   NGLCKEGK++EA ++ D M    +  D   Y  +I
Sbjct: 768 LLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLI 823



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  TF+L++  L +A++   A  L     K         +  +  GY + ++  + 
Sbjct: 566 GIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEG 625

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + +++     E     Y +++        +  AFR    M+  G+    A+ + L+  
Sbjct: 626 ENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHG 685

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N G +D A  +  EM   G  P+   Y T+I G  +LG++ +   + +EM +    P
Sbjct: 686 LC-NIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHP 744

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TYT +I+G C+    +EA +L  EM  KG+ P+  TY++  +GLCK G   +A ++ 
Sbjct: 745 NKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVC 804

Query: 285 QMMISKRHRPNIVTYSTLLNG 305
             M S     + +TY+TL++G
Sbjct: 805 DEMSSGAVCLDEITYTTLIDG 825



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 36/233 (15%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHR 100
           NG+  +  T+ +MI     AN+    E+LL+ +  +K ++   ++ S+ R Y   G ++ 
Sbjct: 600 NGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNA 659

Query: 101 PL--------------------------------DAMRVFDKMKEFGCEPTPKSYITVLA 128
                                             DA  + D+M++ G  P    Y T++ 
Sbjct: 660 AFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIG 719

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
              +  Q+       + M    I P   +  ++I   CK   T +AA K+  EM  +G  
Sbjct: 720 GYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAA-KLLNEMTEKGIL 778

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           PD+ TY    NGLC+ GK+ EA ++  EM + A     +TYT+LI+G  Q  +
Sbjct: 779 PDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDGCHQPST 831


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 192/368 (52%), Gaps = 13/368 (3%)

Query: 103 DAMRVFDKMKEF----GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           DAM +  K++EF    G  P   +Y T++    +  +   A +    MRE G      + 
Sbjct: 96  DAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTY 155

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           NVLI  LC+ SG ++ AF   ++M + G  PD +TYG LINGLC+  +  EAK L  EM 
Sbjct: 156 NVLIAGLCR-SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 214

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P VV Y +LI+G  +  + +EA ++ +EM + GV+PN  TY +L+ GLCK G   
Sbjct: 215 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMD 274

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A  LL+ M+   HRP+ +TY+ ++ G  +    ++A  +L  M+  G+ P+   Y  +I
Sbjct: 275 RASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMI 334

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
              C  G+ ++A++ L+EM   G+ PN   ++        ++ G C+  + + A +++  
Sbjct: 335 HGLCQSGEPEKASDLLEEMTTKGLKPNAFVYA-------PLISGYCREGNVSLACEIFDK 387

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M   ++  D   Y+SLI    K G + +S +   ++   G LP+E T+S ++        
Sbjct: 388 MTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGD 447

Query: 458 MRQAAELL 465
           +  A +L+
Sbjct: 448 LESAEQLV 455



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 193/368 (52%), Gaps = 12/368 (3%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           D+ +   +  GRV    DA  V   M++ G  P+ +    +L  L+  + + L ++    
Sbjct: 51  DVLVDTYKKSGRVQ---DAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREF 107

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   GI P V + + LI+A CK     D A K+  EM  RGC  ++ TY  LI GLCR G
Sbjct: 108 MVGAGISPDVYTYSTLIEAYCKVR-EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSG 166

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + EA    K+ME     P   TY +LINGLC+S+   EA  L +EM    ++PNV  Y+
Sbjct: 167 AVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYA 226

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG  + G + +A ++++ M++   +PN +TY  L+ GLCK G++  A  +L +M   
Sbjct: 227 NLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRD 286

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
             +PD   Y  II         ++A   L EM   GI+PN  T+S+       ++ GLC+
Sbjct: 287 SHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSI-------MIHGLCQ 339

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           + +P +A  +   M  + +  ++  Y+ LI+ +C++G++  +  I D++     LPD   
Sbjct: 340 SGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYC 399

Query: 445 WSAVMTAL 452
           +++++  L
Sbjct: 400 YNSLIFGL 407



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 214/461 (46%), Gaps = 66/461 (14%)

Query: 83  ITEDIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           I+ D++   ++   Y +V     A +V  +M+E GC     +Y  ++A L     ++ AF
Sbjct: 113 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 172

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKN-------------------------------- 168
            F + M + G+ P   +   LI  LCK+                                
Sbjct: 173 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 232

Query: 169 --SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
              G  D AFK+ +EM   G  P+  TY  L+ GLC++G++  A  L K+M   +  P  
Sbjct: 233 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 292

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           +TY  +I G  +  + ++A RL  EM + G+ PNV+TYS ++ GLC+ G   +A +LL+ 
Sbjct: 293 ITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEE 352

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M +K  +PN   Y+ L++G C+EG +  A EI D+M    + PD   Y  +I     +G+
Sbjct: 353 MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGR 412

Query: 347 YQEAANFLDEMVLGGITPNRLTWS--LHIRIHN-------TVVQGLCKTD--PNRAFQVY 395
            +E+  +  +M   G+ PN  T+S  +H  + N        +VQ +  T   PN    + 
Sbjct: 413 VEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID 472

Query: 396 L------------------SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           L                  SM ++ + +D+  Y  LI      G++  + R++ E+  +G
Sbjct: 473 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNG 532

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            +PD   +S++++ L  +   R+ A  +L E+  K V+  +
Sbjct: 533 SVPDVHVYSSLISGLC-KTADREKAFGILDEMSKKGVDPNI 572



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 195/425 (45%), Gaps = 45/425 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T+S+MI  L  + +   A DLL+ +  +       ++  +  GY R      A
Sbjct: 322 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 381

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FDKM +    P    Y +++  L +  +++ + +++  M+E G+ P   + + LI  
Sbjct: 382 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 441

Query: 165 LCKNSGTMDAA--------------------------FK---------IFREMPNRGCTP 189
             KN G +++A                          FK          F+ M ++G   
Sbjct: 442 YLKN-GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVML 500

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+  YG LI+ L   G +  A  +  E+E     P V  Y+SLI+GLC++   E+A  + 
Sbjct: 501 DNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 560

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM  KGV+PN+  Y++L+DGLCK G  S A  +   +++K   PN VTY++L++G CK 
Sbjct: 561 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 620

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G +  A  + + M   G+ PDA +Y  + +     G  ++A   ++EM L G        
Sbjct: 621 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-------- 672

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
              I   N +V G CK        ++   +  R +  ++LT  ++I+   + G + +   
Sbjct: 673 HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHT 732

Query: 429 IVDEL 433
           I  EL
Sbjct: 733 IFVEL 737



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 151/311 (48%), Gaps = 9/311 (2%)

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           A L+VL+    K SG +  A ++   M +RG  P       L+  L R   +    ++ +
Sbjct: 48  AVLDVLVDTY-KKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVRE 106

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            M     SP V TY++LI   C+ +  + A ++  EMR +G   N  TY+ L+ GLC+ G
Sbjct: 107 FMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSG 166

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A    + M      P+  TY  L+NGLCK  +  EA  +LD M    LKP+  +Y 
Sbjct: 167 AVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYA 226

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
            +I  F   G   EA   + EMV  G+ PN++T+       + +V+GLCK    +RA  +
Sbjct: 227 NLIDGFMREGNADEAFKMIKEMVAAGVQPNKITY-------DNLVRGLCKMGQMDRASLL 279

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M   S   D++TY+ +I    +  +   + R++ E+   G  P+  T+S ++  L  
Sbjct: 280 LKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQ 339

Query: 455 RRKMRQAAELL 465
             +  +A++LL
Sbjct: 340 SGEPEKASDLL 350



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 186/447 (41%), Gaps = 62/447 (13%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T+S +I   +       AE L+ R+        + I++ +   Y +       
Sbjct: 427 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 486

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              F  M + G     + Y  ++  L     ++ AFR    + + G  P V   + LI  
Sbjct: 487 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISG 546

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +   + AF I  EM  +G  P+   Y  LI+GLC+ G I  A+ +F  +  K   P
Sbjct: 547 LCK-TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVP 605

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS------------------- 265
             VTYTSLI+G C+   +  A  L+ EM + G+ P+ F YS                   
Sbjct: 606 NCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLI 665

Query: 266 ---------------SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                          +L+DG CK G   + ++LL +++ +   PN +T   +++GL + G
Sbjct: 666 EEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAG 725

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           KL E   I   ++ +  +  A  +  +     + GK     + +D+M             
Sbjct: 726 KLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKI--PLDVVDDM------------- 770

Query: 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
             IR H       CK  + ++A  +   +  +S  +   +Y +++   C+KG + ++  +
Sbjct: 771 --IRDH-------CKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNL 821

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRR 456
           + E+   G L  + T  A++   W RR
Sbjct: 822 LKEMDKRGNL--QPTLVALLGIFWFRR 846


>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Cucumis sativus]
          Length = 460

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 199/399 (49%), Gaps = 13/399 (3%)

Query: 22  IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81
           ++  KD  +AL +F++    +  GF+H   ++S +I KL  + +F   E +L  +     
Sbjct: 56  VKEVKDPCEALALFENY---HEKGFKHHYPSYSSLIYKLARSRRFEAVETILGHLRNRNI 112

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
              E +F+++ + YG+ H     + +F +M  F C  T +S+  +L  LV+ +Q   A  
Sbjct: 113 RCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASE 172

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            ++   E+  +P   S N++IK   K  G  + A  +F EM  +G  P   TY + +  L
Sbjct: 173 IFQQAYEMDFRPNSVSYNIMIKGWIKKGG-WEQACNLFDEMLEKGVQPSVVTYNSFLGVL 231

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           CR G++  A  LFK M  K   P  VTY  L+ G C     +EA +L  +M   G +   
Sbjct: 232 CRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRP 291

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             Y  LM  L K G   +   LL  M  +R +P++VTY+ L+N LCKEGK+ +A ++L +
Sbjct: 292 VNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVK 351

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M++ G  P+A  Y  +I  +C+ G +  A   L+ M++ G  P       H++   ++V 
Sbjct: 352 MQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYP-------HLKTFASLVV 404

Query: 382 GLCKTDPNRAFQVYL--SMRNRSISVDSLTYSSLITCFC 418
           GL K + N  +  ++   M  R +  D+ T+  LI   C
Sbjct: 405 GLLKGENNDDYVCFVLEEMEKRQLRFDAETWRILIMDVC 443



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 201/426 (47%), Gaps = 29/426 (6%)

Query: 66  FRPAEDLLDRVNKEKCDITEDI-FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124
           F P +   +  +K++  I E I F++  +    V  P +A+ +F+   E G +    SY 
Sbjct: 29  FSPNKFDFENNHKQRRKIRERIPFVTDVK---EVKDPCEALALFENYHEKGFKHHYPSYS 85

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
           +++  L    + +       H+R   I+ C  +L V +      +  ++   ++F +MP+
Sbjct: 86  SLIYKLARSRRFEAVETILGHLRNRNIR-CNETLFVALIQHYGKAHLVEKGIELFHQMPS 144

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
             C     ++  L+N L    +  +A E+F++       P  V+Y  +I G  +    E+
Sbjct: 145 FNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMDFRPNSVSYNIMIKGWIKKGGWEQ 204

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A  LF+EM  KGV+P+V TY+S +  LC+ G    A+ L + M  K H PN VTY+ L+ 
Sbjct: 205 ACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLME 264

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G C  GK +EA +++  M+  G K     YG +++     G   E  + L+EM    + P
Sbjct: 265 GWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKP 324

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           + +T+       N +V  LCK      A++V + M+      ++ TY  +I  +C  GD 
Sbjct: 325 DVVTY-------NILVNYLCKEGKVGDAYKVLVKMQVGGCDPNAATYRMMIDGYCNAGDF 377

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTAL----------------WDRRKMRQAAELLLL 467
             + +I++ +++ G  P   T+++++  L                 ++R++R  AE   +
Sbjct: 378 DGAMKILNAMLMSGHYPHLKTFASLVVGLLKGENNDDYVCFVLEEMEKRQLRFDAETWRI 437

Query: 468 ELMNKC 473
            +M+ C
Sbjct: 438 LIMDVC 443


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 210/424 (49%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G+  D  T+  +I+ L    Q + A  LL  + K        ++ ++  G  +     
Sbjct: 153 AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVS 212

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +  ++ E G      +Y +++       + +   +    M    + P   + N+LI
Sbjct: 213 DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILI 272

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            ALCK    ++A   +   M  RG  PD  TY  L+ G C    ++EA+ELF  M  +  
Sbjct: 273 DALCKEGRILEAQ-GVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGL 331

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V+ Y  LI+G C++K V+EAM LF+E+ +K + P + +Y+SL+DGLC  G  S   +
Sbjct: 332 EPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKK 391

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M      P++VTY+ L++ LCKEG++ EA+ +L  M  +G+KP+   Y  ++  +C
Sbjct: 392 LLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYC 451

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
                  A +  + MV  G+ P+ L +       N ++ G CKT+  + A  ++  MR++
Sbjct: 452 LRNNVNVAKDIFNRMVKSGLEPDILNY-------NVLINGYCKTEMVDEAIVLFKEMRHK 504

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           ++  D  +Y+SLI   C  G I     ++DE+   G  PD  T++ ++ A    +   +A
Sbjct: 505 NLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKA 564

Query: 462 AELL 465
             L 
Sbjct: 565 ISLF 568



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 206/422 (48%), Gaps = 10/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I    S  +++    LL ++ +E  D  +  F  +     +  R L+A
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             V   M + G +P   +Y  ++        +  A   +  M + G++P V + NVLI  
Sbjct: 285 QGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK +  +D A  +F+E+ N+   P   +Y +LI+GLC  G+I   K+L  EM   A  P
Sbjct: 345 YCK-TKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPP 403

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY  LI+ LC+   + EA+ +   M  KGV+PN+ TY+++MDG C     + A ++ 
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+     P+I+ Y+ L+NG CK   + EA+ +   M+ + L PD   Y  +I   C++
Sbjct: 464 NRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+       LDEM   G +P+ +T+       N ++   CKT P ++A  ++  +    I
Sbjct: 524 GRIPHVQELLDEMCDSGQSPDVITY-------NILLDAFCKTQPFDKAISLFRQIV-EGI 575

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D  T  +++   CK   +  +   +  L++ GC P+  T++ ++ AL       +A  
Sbjct: 576 WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAML 635

Query: 464 LL 465
           LL
Sbjct: 636 LL 637



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 198/385 (51%), Gaps = 11/385 (2%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H P  A+ +F +++  G  P+  ++  ++     ++    AF     + + G QP + + 
Sbjct: 70  HYP-TAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTF 128

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N +I   C N G +  A    + +  +G   D +TYGTLINGL + G+I  A  L +EME
Sbjct: 129 NTIINGFCIN-GMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEME 187

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
             +  P +V Y++LI+GLC+   V +A+ L  ++  +G+  +  TY+SL+DG C  G   
Sbjct: 188 KSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQ 247

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +  +LL  M+ +   P+  T++ L++ LCKEG++ EA  +L  M  +G KPD   Y  ++
Sbjct: 248 EVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
             +C      EA    + MV  G+ P+ L +       N ++ G CKT   + A  ++  
Sbjct: 308 EGYCSRENVHEARELFNRMVKRGLEPDVLNY-------NVLIDGYCKTKMVDEAMVLFKE 360

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           + N+++     +Y+SLI   C  G I    +++DE+      PD  T++ ++ AL    +
Sbjct: 361 LCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGR 420

Query: 458 MRQAAELLLLELMNKCVEAEVDIQN 482
           + +A  +L++ +M K V+  +   N
Sbjct: 421 ILEALGVLVM-MMKKGVKPNIVTYN 444



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 204/419 (48%), Gaps = 14/419 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNK--EKCDITEDIFLSICRGYGRVHRPLDAMR 106
           D+ TF+++I  L    +   A+ +L  ++K  EK DI    + ++  GY       +A  
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVT--YNALMEGYCSRENVHEARE 321

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +F++M + G EP   +Y  ++    +   +  A   ++ +    + P +AS N LI  LC
Sbjct: 322 LFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLC 381

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
            NSG +    K+  EM      PD  TY  LI+ LC+ G+I EA  +   M  K   P +
Sbjct: 382 -NSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNI 440

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VTY ++++G C   +V  A  +F  M   G+EP++  Y+ L++G CK     +A+ L + 
Sbjct: 441 VTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKE 500

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M  K   P+I +Y++L++GLC  G++    E+LD M   G  PD   Y  ++  FC    
Sbjct: 501 MRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQP 560

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISV 405
           + +A +   ++V  GI P+  T       ++ +V  LCK +  +  +  L  +     S 
Sbjct: 561 FDKAISLFRQIV-EGIWPDFYT-------NHAIVDNLCKGEKLKMAEDALKHLLMHGCSP 612

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +  TY+ LI   CK G   ++  ++ ++  +   PD  T+  ++  L  R +  +A +L
Sbjct: 613 NVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKL 671



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 166/316 (52%), Gaps = 8/316 (2%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRV 107
           ++++ +I  L ++ +    + LLD ++        +T +I +      GR+   L+A+ V
Sbjct: 371 ASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRI---LEALGV 427

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
              M + G +P   +Y  ++      N + +A   +  M + G++P + + NVLI   CK
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
               +D A  +F+EM ++   PD  +Y +LI+GLC LG+I   +EL  EM     SP V+
Sbjct: 488 TE-MVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY  L++  C+++  ++A+ LF ++  +G+ P+ +T  +++D LCKG     A + L+ +
Sbjct: 547 TYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHL 605

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           +     PN+ TY+ L+N LCK+G   EA+ +L +M+     PDA  +  II       + 
Sbjct: 606 LMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNET 665

Query: 348 QEAANFLDEMVLGGIT 363
            +A    +EM+  G+ 
Sbjct: 666 DKAEKLREEMIARGLV 681



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 152/318 (47%), Gaps = 15/318 (4%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +D A   F  M      P +  +  L+  + R+G    A  LF ++++K  SP++ T+T
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFT 94

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN          A  L   +   G +PN+ T++++++G C  G   +A++  Q ++++
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
            +  +  TY TL+NGL K G+++ A+ +L  M+   ++P+  +Y  +I   C  G   +A
Sbjct: 155 GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDA 214

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
                ++   GI  + +T+       N+++ G C         Q+   M   ++  D  T
Sbjct: 215 LGLCSQIGERGILLDAVTY-------NSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYT 267

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           ++ LI   CK+G I ++  ++  +   G  PD  T++A+M     R  + +A EL     
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELF---- 323

Query: 470 MNKCVE--AEVDIQNQDV 485
            N+ V+   E D+ N +V
Sbjct: 324 -NRMVKRGLEPDVLNYNV 340



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 132/265 (49%), Gaps = 8/265 (3%)

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           CR   + +A   F  M      P    +  L+  + +      A+ LF +++SKG+ P++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            T++ L++       ++ A  LL  ++   ++PN+VT++T++NG C  G + +A++    
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           +  QG   D   YG +I+     G+ + A + L EM    + PN + +S        ++ 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYS-------ALID 203

Query: 382 GLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLCK    + A  +   +  R I +D++TY+SLI   C  G   +  +++ ++V +   P
Sbjct: 204 GLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDP 263

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
           D+ T++ ++ AL    ++ +A  +L
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVL 288



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 2/246 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ M+      N    A+D+ +R+ K   +     +  +  GY +     +A
Sbjct: 435 GVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEA 494

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+     P   SY +++  L    ++         M + G  P V + N+L+ A
Sbjct: 495 IVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDA 554

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK +   D A  +FR++   G  PD YT   +++ LC+  K+  A++  K +    CSP
Sbjct: 555 FCK-TQPFDKAISLFRQIV-EGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSP 612

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TYT LIN LC+  S  EAM L  +M      P+  T+  ++  L +   + +A +L 
Sbjct: 613 NVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLR 672

Query: 285 QMMISK 290
           + MI++
Sbjct: 673 EEMIAR 678


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 233/477 (48%), Gaps = 50/477 (10%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +++V KAL IF+    +   G    + T++++I           A +L  ++       +
Sbjct: 295 QREVRKALDIFEETLRD---GLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPS 351

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            + F  + +G        DA+ +F +M + G  P   +Y  ++  L +  +++ A   + 
Sbjct: 352 TNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWE 410

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD-------------- 190
            M E G++P + + + L+   C N G MD A K++ EMP +G TP+              
Sbjct: 411 KMNETGVKPYIVTYHSLLLCYCVN-GCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINK 469

Query: 191 ---------------------SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
                                 YTY TLINGLC +G++ E  E+ K  ET+   PT +TY
Sbjct: 470 AAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTY 529

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            S+ING  ++  +  A  ++++M +KG+ PN+ TY+S +DG CK  C   A+++L  +  
Sbjct: 530 NSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRC 589

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K  RP+I  Y++L+ G C+EG +  A+++L  M   GL P+  +Y   I+ + ++   +E
Sbjct: 590 KGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEE 649

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF--QVYLSMRNRSISVDS 407
           A  F ++M+  GI  +  T++       T++ G  K D N  F  ++Y  M  +    D 
Sbjct: 650 ALRFYEKMIKEGIDLDTATYT-------TLIDGFSK-DGNVTFALKLYSEMVAKGNIPDH 701

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +T+++L    C+ GDI  + +++DE+      P+   ++ ++       K+++A  L
Sbjct: 702 ITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRL 758



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 225/456 (49%), Gaps = 18/456 (3%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +D N+AL++          GF   + TF+ ++  LV   +   A  + D +      ++ 
Sbjct: 226 RDANRALLVLRKMQDA---GFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSV 282

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +  ++  GY        A+ +F++    G  PT  +Y  ++    EE   + A+   R 
Sbjct: 283 VLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQ 342

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           MR+ G+ P     N++IK L  +    DA   +F+EM + G  PD++TY  LI+ LC+  
Sbjct: 343 MRDHGLLPSTNEFNMVIKGLLNDKLWKDAV-SLFKEMADSG-IPDAFTYNILIHWLCQRR 400

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           KI EA  L+++M      P +VTY SL+   C +  ++EA++L+ EM  KG  PNV TY+
Sbjct: 401 KIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYT 460

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +LM G        +A  LL  M       N  TY+TL+NGLC  G++ E  E+L R + +
Sbjct: 461 TLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETE 520

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G  P A  Y  II+ F   G    A     +M   GI PN +T++       + + G CK
Sbjct: 521 GFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYT-------SFIDGYCK 573

Query: 386 TD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           T   + A ++   +R + +  D   Y+SLI  FC++G++  + +++  ++ DG LP+   
Sbjct: 574 TSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISV 633

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
           +++ +T   + + M +A     L    K ++  +D+
Sbjct: 634 YNSFITGYKNLKMMEEA-----LRFYEKMIKEGIDL 664



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 164/329 (49%), Gaps = 1/329 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +  T++ ++   ++   F  A  LL  + +      +  + ++  G   V R  + 
Sbjct: 451 GFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEV 510

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  + +  G  PT  +Y +++   ++   +  AF  Y+ M   GI P + +    I  
Sbjct: 511 GEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDG 570

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK S   D A K+  ++  +G  PD   Y +LI G C+ G +  A ++   M      P
Sbjct: 571 YCKTS-CCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLP 629

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +  Y S I G    K +EEA+R +E+M  +G++ +  TY++L+DG  K G  + A++L 
Sbjct: 630 NISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLY 689

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M++K + P+ +T++ L +GLC+ G + +A ++LD M    ++P+  +Y  +I+ +   
Sbjct: 690 SEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRN 749

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           GK QEA    DEM+   I P+  T+ + +
Sbjct: 750 GKLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 151/316 (47%), Gaps = 7/316 (2%)

Query: 28  VNKALVIFDSATAEYA----NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI 83
           +NKA   FD A A  A    NG   ++ T++ +I+ L    +     ++L R   E    
Sbjct: 467 INKA--AFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVP 524

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           T   + SI  G+ +      A  V+ +M   G  P   +Y + +    + +   LA +  
Sbjct: 525 TAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKML 584

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             +R  G++P +A+ N LI   C+  G M  A ++   M   G  P+   Y + I G   
Sbjct: 585 NDVRCKGLRPDIAAYNSLIYGFCQ-EGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKN 643

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
           L  + EA   +++M  +       TYT+LI+G  +  +V  A++L+ EM +KG  P+  T
Sbjct: 644 LKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHIT 703

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +++L  GLC+ G    A +LL  M     RPN++ Y+ L+NG  + GKLQEA  + D M 
Sbjct: 704 FTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEML 763

Query: 324 LQGLKPDAGLYGKIIS 339
            + + PD   Y  ++ 
Sbjct: 764 ERKIMPDDTTYDILVG 779



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 160/356 (44%), Gaps = 10/356 (2%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M+  G  P  KS   +LA+         A      MR  G  P  A +  ++   C   G
Sbjct: 133 MEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKG-HPLDAWMFDVVMRACFKEG 191

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             D A ++F EMP     PD       I  LC+L     A  + ++M+     P   T+ 
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFN 251

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           S+++ L +   +EEA+ + +E+ + G + +V   ++LM G C      +A+++ +  +  
Sbjct: 252 SVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRD 311

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P  VTY+ L+ G  +EG  ++A E+  +M+  GL P    +  +I    +   +++A
Sbjct: 312 GLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDA 371

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLT 409
            +   EM   GI P+  T+       N ++  LC+    R A  ++  M    +    +T
Sbjct: 372 VSLFKEMADSGI-PDAFTY-------NILIHWLCQRRKIREALNLWEKMNETGVKPYIVT 423

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y SL+ C+C  G + ++ ++  E+   G  P+  T++ +M    ++    +A  LL
Sbjct: 424 YHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALL 479



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 10/159 (6%)

Query: 322 MKLQGLKPDAGLYGKII-SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           M+ +G   DA ++  ++ +CF + G Y +A    DEM    I P++       R+ +  +
Sbjct: 168 MRGKGHPLDAWMFDVVMRACFKE-GMYDDAVRLFDEMPASEIEPDQ-------RVCSVAI 219

Query: 381 QGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LCK  D NRA  V   M++        T++S++    K G + ++  I DEL+  G  
Sbjct: 220 ASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKK 279

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
                 + +M     +R++R+A ++    L +  V  +V
Sbjct: 280 MSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDV 318


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/438 (29%), Positives = 221/438 (50%), Gaps = 30/438 (6%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT-EDIF 88
           K+L+ F    + Y   F H   ++  M+  L++    + AE LL  V   K   +   +F
Sbjct: 91  KSLLSFFDFLSSYPT-FSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKGSASSVF 149

Query: 89  LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
            SI    G     L +  VFD +               +++  E   +  A + +R  ++
Sbjct: 150 ASILETKGT----LSSSFVFDAL---------------MSVYTEFGYVSDAIQCFRLTKK 190

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
             ++        L++ + K S  M  A + + E+ + G  P+ YT+  L+N LC+ GK+ 
Sbjct: 191 HNLKIPFNGCKCLLERMIKMSSPM-VALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVK 249

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A+ +F E+      PT V++ +LING C+S ++EE  RL   M    V P+VFTYS+L+
Sbjct: 250 DAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALI 309

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DGLCK      A  L + M  +   PN VT++TL+NG CK G++  A+EI  +M  +GLK
Sbjct: 310 DGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLK 369

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D 387
            D  LY  +I   C  G ++EA  F+ EM   G+ P++ T++       T++ G CK  D
Sbjct: 370 ADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYT-------TLLDGSCKEGD 422

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
              A ++   M    I +D++ ++++I+  C+ G I  + R + E++  G  PD+GT++ 
Sbjct: 423 LELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTM 482

Query: 448 VMTALWDRRKMRQAAELL 465
           VM     +  ++   +LL
Sbjct: 483 VMDGFCKKGDVKMGFKLL 500



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 190/359 (52%), Gaps = 12/359 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD++++ G +PT  S+ T++    +   L+  FR    M E  + P V + + LI
Sbjct: 250 DAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALI 309

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK     DA   +F+EM +RG  P+  T+ TLING C+ G++  A E++++M TK  
Sbjct: 310 DGLCKECQLEDAN-HLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGL 368

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              +V Y +LI+GLC+     EA +   EM  +G+ P+ FTY++L+DG CK G    A+E
Sbjct: 369 KADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALE 428

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M+ +  + + V ++ +++GLC++GK+ +A   L  M   GLKPD G Y  ++  FC
Sbjct: 429 MRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFC 488

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNR 401
             G  +     L EM   G  P  +T+       N ++ GLCK    +   + L +M N 
Sbjct: 489 KKGDVKMGFKLLKEMQSDGHIPGVITY-------NVLMNGLCKQGQVKNADMLLNAMLNL 541

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
            +  D +TY+ L+   CK G +     +  E+   G + D  ++ +++  L    K RQ
Sbjct: 542 GVVPDDITYNILLQGHCKHGKLGDFQNVKTEM---GLVSDYASYRSLLHELSKASKDRQ 597



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 4/195 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ ++           A ++   + KE   +    F +I  G  R  + +DA
Sbjct: 402 GLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDA 461

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R   +M   G +P   +Y  V+    ++  +K+ F+  + M+  G  P V + NVL+  
Sbjct: 462 ERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNG 521

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK  G +  A  +   M N G  PD  TY  L+ G C+ GK+ + + +  EM       
Sbjct: 522 LCKQ-GQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEM---GLVS 577

Query: 225 TVVTYTSLINGLCQS 239
              +Y SL++ L ++
Sbjct: 578 DYASYRSLLHELSKA 592


>gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa]
 gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 248/494 (50%), Gaps = 48/494 (9%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T  +++ LI  +K   +AL  F+ A+      F H  ST+  +I KL++  +F   + LL
Sbjct: 14  THERIVHLILDQKSAPQALQTFEWASK--LPNFTHSQSTYRALIHKLLTFRRFHTVQHLL 71

Query: 74  DRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           D + K       E IFL+I RG GR     D ++V D +  +G  P+ K + ++L +LV+
Sbjct: 72  DEMPKSIGLPPDESIFLTIIRGLGRARMIRDVIKVLDLVTRYGKNPSLKIFNSILDVLVK 131

Query: 133 ENQLKLAFRFYRH-MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           E+ + LA +FYR  M   GIQ    +  +L+K LC  +  +   FK+ + + +RG  P+ 
Sbjct: 132 ED-IDLARKFYRKKMMGAGIQGDDYTYGILMKGLCL-TNRIGEGFKLLQVIKSRGLKPNV 189

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
             Y TL++ LC  GK+  A+ L  E++     P  VT+  LI G C+  +  +A+ L E+
Sbjct: 190 VIYNTLLHALCNNGKVGRARSLMNEIK----EPNDVTFNVLICGYCKEDNFVQALVLLEK 245

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
             S G  P+V T + +++ LC  G  ++A+E+L+ + SK    ++V ++TL+ G CK GK
Sbjct: 246 SFSLGFVPDVVTVTKVVEILCNVGRVTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGK 305

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           ++    +L  M+ +G  P+A  Y  +IS FC+ G  + A +  ++M   GI  N +T+  
Sbjct: 306 VKLGHGLLKEMERKGCLPNADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDT 365

Query: 372 HIR------------------------------IHNTVVQGLCKTDP-NRAFQVYLSMRN 400
            I+                               +N+V+ GL + +  N A +  + M N
Sbjct: 366 LIKGLFSRGRTEDGFKILELMEETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKMEN 425

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +   ++  S  I  FC++G I ++ R+ D++  +G +P    +  ++        +R+
Sbjct: 426 --LFPRAVDRSLRILGFCEEGAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVRE 483

Query: 461 AAELLLLELMNKCV 474
           A     LELMN+ V
Sbjct: 484 A-----LELMNEMV 492



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 214/429 (49%), Gaps = 25/429 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN----KEKCDITEDIFLSICRGYGRVHR 100
           G + D+ T+ +++  L   N+      LL  +     K    I   +  ++C   G+V R
Sbjct: 149 GIQGDDYTYGILMKGLCLTNRIGEGFKLLQVIKSRGLKPNVVIYNTLLHALCNN-GKVGR 207

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A  + +++KE    P   ++  ++    +E+    A         +G  P V ++  
Sbjct: 208 ---ARSLMNEIKE----PNDVTFNVLICGYCKEDNFVQALVLLEKSFSLGFVPDVVTVTK 260

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +++ LC N G +  A +I   + ++G   D   + TLI G C+ GK+     L KEME K
Sbjct: 261 VVEILC-NVGRVTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKEMERK 319

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C P   TY +LI+G C+S  +E A+ +F +M++ G+  N  T+ +L+ GL   G +   
Sbjct: 320 GCLPNADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRTEDG 379

Query: 281 MELLQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            ++L++M   R     +I  Y+++L GL ++  L EA+E L  MK++ L P A      I
Sbjct: 380 FKILELMEETRGVCGGSISPYNSVLYGLYRKNMLNEALEFL--MKMENLFPRAVDRSLRI 437

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLS 397
             FC+ G  QEA    D+M   G  P+ L       +++ ++ G C+    R A ++   
Sbjct: 438 LGFCEEGAIQEAKRVYDQMNNEGGIPSAL-------VYDCLIHGFCQEGCVREALELMNE 490

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M        + T+++LI+ FC+ G    + ++++++V  GC+PD G++S ++ AL  ++ 
Sbjct: 491 MVFLGYFPVASTFNALISGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDALCRKKS 550

Query: 458 MRQAAELLL 466
            ++AA LLL
Sbjct: 551 FQKAASLLL 559



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 173/348 (49%), Gaps = 8/348 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E +  +ALV+ + +   ++ GF  D  T + ++  L +  +   A ++L+RV  +   + 
Sbjct: 233 EDNFVQALVLLEKS---FSLGFVPDVVTVTKVVEILCNVGRVTEAVEILERVESKGGVVD 289

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
                ++ +G+ +  +      +  +M+  GC P   +Y  +++   E   L+ A   + 
Sbjct: 290 VVAHNTLIKGFCKFGKVKLGHGLLKEMERKGCLPNADTYNALISGFCESGMLESALDMFN 349

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRG-CTPDSYTYGTLINGLC 202
            M+  GI     + + LIK L     T D  FKI   M   RG C      Y +++ GL 
Sbjct: 350 DMKTDGINCNFVTFDTLIKGLFSRGRTEDG-FKILELMEETRGVCGGSISPYNSVLYGLY 408

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           R   + EA E   +ME     P  V  +  I G C+  +++EA R++++M ++G  P+  
Sbjct: 409 RKNMLNEALEFLMKMEN--LFPRAVDRSLRILGFCEEGAIQEAKRVYDQMNNEGGIPSAL 466

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
            Y  L+ G C+ GC  +A+EL+  M+   + P   T++ L++G C+ GK   A+++L+ M
Sbjct: 467 VYDCLIHGFCQEGCVREALELMNEMVFLGYFPVASTFNALISGFCRLGKDGSALKLLEDM 526

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
             +G  PD G Y  +I   C    +Q+AA+ L +MV  GITP+ L W+
Sbjct: 527 VGRGCVPDTGSYSPLIDALCRKKSFQKAASLLLQMVENGITPDYLIWN 574



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 122/260 (46%), Gaps = 5/260 (1%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +IS    +     A D+ + +  +  +     F ++ +G     R  D  ++ + M
Sbjct: 327 TYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRTEDGFKILELM 386

Query: 112 KEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +E    C  +   Y +VL  L  +N L  A  F   M  +  +    SL +L    C+  
Sbjct: 387 EETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKMENLFPRAVDRSLRIL--GFCE-E 443

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A +++ +M N G  P +  Y  LI+G C+ G + EA EL  EM      P   T+
Sbjct: 444 GAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVFLGYFPVASTF 503

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            +LI+G C+      A++L E+M  +G  P+  +YS L+D LC+     +A  LL  M+ 
Sbjct: 504 NALISGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDALCRKKSFQKAASLLLQMVE 563

Query: 290 KRHRPNIVTYSTLLNGLCKE 309
               P+ + +++L + L ++
Sbjct: 564 NGITPDYLIWNSLFHCLSQQ 583


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 208/430 (48%), Gaps = 28/430 (6%)

Query: 56  MISKLVSANQFRPAEDLLDRVN-----------------KEKCDITEDIFLSICRGYGRV 98
           MI  L    QF+ A++LL+R+                   +  D    I   +   Y   
Sbjct: 81  MIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYANS 140

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
               DA++VF+ M+  G +P   +   +L  L +     + ++ Y+ M  +G+ P +   
Sbjct: 141 RMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIF 200

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           NVLI A CK SG ++ A ++  EM +R   PD +TY TLI+  C+ G  YEA  +   ME
Sbjct: 201 NVLIHACCK-SGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRME 259

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
               SP +VTY SLI G C+   + EA+RLF E+   G  PN  TY++L+DG C+     
Sbjct: 260 RGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLE 317

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A+ L ++M  +   P +VTY+++L  LC+EGK+++A  +L+ M  + ++PD      +I
Sbjct: 318 EALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLI 377

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLS 397
           + +C IG    A     +M+  G+ P++ T+         ++ G CK  + + A +    
Sbjct: 378 NAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFK-------ALIHGFCKLHEVDSAKEFLFE 430

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M +   S    TYS L+  +  + +     R+ DEL   G   D   + A++  L    K
Sbjct: 431 MLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDK 490

Query: 458 MRQAAELLLL 467
           +  A  +  L
Sbjct: 491 IESAERIFTL 500



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 147/311 (47%), Gaps = 7/311 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D  T++ +IS          A  + DR+  E+  ++ DI  + S+  G+ R  R  +A+R
Sbjct: 231 DLFTYNTLISLYCKKGMHYEALGIQDRM--ERGGVSPDIVTYNSLIYGFCREGRMREALR 288

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +F ++   G  P   +Y T++      N L+ A R    M   G+ P V + N +++ LC
Sbjct: 289 LFREIN--GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLC 346

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           +  G +  A ++  EM  R   PD+ T  TLIN  C++G +  A ++ K+M      P  
Sbjct: 347 E-EGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQ 405

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T+ +LI+G C+   V+ A     EM   G  P+  TYS L+D           + L   
Sbjct: 406 FTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDE 465

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +  K    +I  Y  L+  LCK  K++ A  I   M+ +G+K D+ +Y  +   +   GK
Sbjct: 466 LSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGK 525

Query: 347 YQEAANFLDEM 357
              A++ LDEM
Sbjct: 526 AIAASDMLDEM 536



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 13/309 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I       + R A  L   +N    +     + ++  GY RV+   +A
Sbjct: 262 GVSPDIVTYNSLIYGFCREGRMREALRLFREINGATPN--HVTYTTLIDGYCRVNDLEEA 319

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+ + M+  G  P   +Y ++L  L EE ++K A R    M E  ++P   + N LI A
Sbjct: 320 LRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINA 379

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M +A K+ ++M   G  PD +T+  LI+G C+L ++  AKE   EM     SP
Sbjct: 380 YCK-IGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSP 438

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           +  TY+ L++      + E  +RL +E+  KG+  ++  Y +L+  LCK      A  + 
Sbjct: 439 SYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIF 498

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY---------- 334
            +M  K  + + V Y++L     K GK   A ++LD M  + L     +Y          
Sbjct: 499 TLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGD 558

Query: 335 GKIISCFCD 343
           G I+  F D
Sbjct: 559 GSILGLFWD 567


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 197/350 (56%), Gaps = 9/350 (2%)

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           P+     + ++ E+G  P  + Y  ++    +E  ++ A   +  +R+ G++P   S N 
Sbjct: 204 PVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNT 263

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  LCK S  +D  F++ + M      PD +TY  LI+GLC+ G++  A++LF EM+ +
Sbjct: 264 LINGLCK-SRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQR 322

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  +T+T+LI+G  +S+ ++ AM  + +M + GV+P++  Y++L++GLCK G  ++A
Sbjct: 323 GLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKA 382

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +L+  M     +P+ +TY+TL++G CKEG L+ A+EI   M  +G+  D   +  +IS 
Sbjct: 383 RKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISG 442

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
           FC  G+ ++A   L EMV  G+ P+  T+++       V+ G CK  +    F++   M+
Sbjct: 443 FCRDGRVRDAERTLREMVEAGMKPDDATYTM-------VIDGYCKKGNVKMGFKLLKEMQ 495

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
                   +TY+ L+   CK+G +  +  +++ ++  G  PD+ T++ ++
Sbjct: 496 INGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILL 545



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 174/328 (53%), Gaps = 14/328 (4%)

Query: 140 FRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           FR  R+   +I    C   L+ +I     NS +    +  + E+   G  P    Y  LI
Sbjct: 176 FRLVRNSNFQIPFHGCGYLLDKMI-----NSNSPVTIWTFYSEILEYGFPPKVQYYNILI 230

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           N  C+ G I +AK +F E+  +   PT V++ +LINGLC+S++++E  RL + M    + 
Sbjct: 231 NKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIY 290

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P+VFTYS L+ GLCK G    A +L   M  +  RPN +T++ L++G  +  ++  A+  
Sbjct: 291 PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNT 350

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
             +M   G+KPD  +Y  +++  C +G   +A   +DEM + G+ P+++T++       T
Sbjct: 351 YHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYT-------T 403

Query: 379 VVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ G CK  D   A ++   M    + +D++ +++LI+ FC+ G +  + R + E+V  G
Sbjct: 404 LIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAG 463

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD+ T++ V+     +  ++   +LL
Sbjct: 464 MKPDDATYTMVIDGYCKKGNVKMGFKLL 491



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 196/386 (50%), Gaps = 14/386 (3%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           F S   EY  GF      ++++I+K       R A+ + + + K     T   F ++  G
Sbjct: 210 FYSEILEY--GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLING 267

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
             +     +  R+   M+E    P   +Y  ++  L +E +L +A + +  M++ G++P 
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPN 327

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             +   LI    + S  MD+A   + +M   G  PD   Y TL+NGLC++G + +A++L 
Sbjct: 328 GITFTALIDGQYR-SRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            EM+     P  +TYT+LI+G C+   +E AM + + M  +GV  +   +++L+ G C+ 
Sbjct: 387 DEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD 446

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G    A   L+ M+    +P+  TY+ +++G CK+G ++   ++L  M++ G KP    Y
Sbjct: 447 GRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV 394
             +++  C  G+ + A   L+ M+  G+TP+ +T+       N +++G CK   N   + 
Sbjct: 507 NVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITY-------NILLEGHCK---NGKAED 556

Query: 395 YLSMRN-RSISVDSLTYSSLITCFCK 419
            L +RN + + VD   Y+SL++ + K
Sbjct: 557 LLKLRNEKGLIVDYAYYTSLVSEYNK 582


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 230/458 (50%), Gaps = 16/458 (3%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE 79
            ++ A   +NK+  ++          F  D +T +++++ L +  +   AE +L ++  +
Sbjct: 200 NILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKM--K 257

Query: 80  KCDITEDI-FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138
            C +   + + +I   Y +  R   A+R+ D M++ G E    +Y  ++  L +  +   
Sbjct: 258 NCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSAR 317

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A+   + MRE+ + P   S N LI       G ++ A  IF +M  +   P   TY  LI
Sbjct: 318 AYLLLKRMREVNLTPDECSYNTLIHGFF-GEGKINLAIYIFNQMLRQSLKPSVATYTALI 376

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +G CR G+  EA+ +  EM+     P+ +TY++L+NG C+   +  A+ L + +RS+ + 
Sbjct: 377 DGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSIS 436

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
            N   Y+ L+DG C+ G  S+A ++L+ M++    P+++TYS L+NG+CK G + E  EI
Sbjct: 437 INRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEI 496

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L RM+  G+ P+  LY  ++  FC  G  +EA  +  ++   G+  N +       IHN 
Sbjct: 497 LSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSV-------IHNA 549

Query: 379 VVQGLCKTD---PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           ++    +         F+ Y+S     IS D  +++ +I  +C++G++ ++  + D +V 
Sbjct: 550 LLCSFYREGMIAEAEQFKQYMS--RMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVR 607

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            G  PD  T+ +++  L     + QA E ++  L   C
Sbjct: 608 HGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKAC 645



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 211/424 (49%), Gaps = 8/424 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G   D  T+S +I+ +         +++L R+ K        ++ ++   + +     
Sbjct: 467 ADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAK 526

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A++ F  +   G       +  +L     E  +  A +F ++M  + I   VAS N +I
Sbjct: 527 EALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCII 586

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            + C+    ++A F ++  M   G  PD  TYG+L+ GLC+ G + +AKE    +  KAC
Sbjct: 587 DSYCQRGNVLEA-FSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKAC 645

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +    T  +L+ G+C+  +++EA+ L E+M ++ + P+ +TY+ L+DG CK G    A+ 
Sbjct: 646 AIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALI 705

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL-QGLKPDAGLYGKIISCF 341
           LLQMM+ K   P+ + Y+ LLNGL  EG+++ A  +   +   +GL  D   Y  +++ +
Sbjct: 706 LLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGY 765

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
              G+  E    +  M    + P+  + S +I +H  + +G      +R   +Y  M   
Sbjct: 766 LKGGQINEIERLMRNMHENEVYPS--SASYNILMHGYIKKG----QLSRTLYLYRDMVKE 819

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I  D++TY  LI   C+ G I  + + ++++VL+G  PD   +  ++ A  ++ KM  A
Sbjct: 820 GIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNA 879

Query: 462 AELL 465
            +L 
Sbjct: 880 LQLF 883



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 212/463 (45%), Gaps = 62/463 (13%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGYGRVHRPLDAM 105
           T++ +++  V   + + A  +LD  + EK  I  D++        +C+    + R   A 
Sbjct: 266 TYNTILNWYVKKGRCKSALRILD--DMEKNGIEADLYTYNIMIDKLCK----LKRSARAY 319

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            +  +M+E    P   SY T++     E ++ LA   +  M    ++P VA+   LI   
Sbjct: 320 LLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGY 379

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C+N G  D A ++  EM   G  P   TY  L+NG C+  K+  A +L K + +++ S  
Sbjct: 380 CRN-GRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISIN 438

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
              YT LI+G CQ   V +A ++ + M + G++P+V TYS+L++G+CK G   +  E+L 
Sbjct: 439 RTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILS 498

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP---------------- 329
            M      PN V Y+TL+   CK G  +EA++    +   GL                  
Sbjct: 499 RMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREG 558

Query: 330 -------------------DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
                              D   +  II  +C  G   EA +  D MV  G  P+  T+ 
Sbjct: 559 MIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYG 618

Query: 371 LHIRIHNTVVQGLCKTD---PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                  ++++GLC+       + F VYL    ++ ++D  T ++L+   CK G + ++ 
Sbjct: 619 -------SLLRGLCQGGHLVQAKEFMVYL--LEKACAIDEKTLNTLLVGICKHGTLDEAL 669

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
            + +++V    LPD  T++ ++     R K+  A  L+LL++M
Sbjct: 670 DLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPA--LILLQMM 710



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 211/455 (46%), Gaps = 15/455 (3%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           Y +G   ++   + ++           AE     +++ K       F  I   Y +    
Sbjct: 536 YRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNV 595

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           L+A  V+D M   G  P   +Y ++L  L +   L  A  F  ++ E        +LN L
Sbjct: 596 LEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTL 655

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  +CK+ GT+D A  +  +M  R   PD+YTY  L++G C+ GK+  A  L + M  K 
Sbjct: 656 LVGICKH-GTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKG 714

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQA 280
             P  + YT L+NGL     V+ A  +F+E+  K G+  +   Y+S+M+G  KGG  ++ 
Sbjct: 715 LVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEI 774

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             L++ M      P+  +Y+ L++G  K+G+L   + +   M  +G+KPD   Y  +I  
Sbjct: 775 ERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFG 834

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH------NTVVQGLCKT----DPNR 390
            C+ G  + A  FL++MVL G+ P+ L + + I+        +  +Q         D + 
Sbjct: 835 LCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDG 894

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           AF++   M+   +    +  SS++   CK G + ++  +   ++  G +P   T++ +M 
Sbjct: 895 AFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMH 954

Query: 451 ALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQDV 485
            L    K+  A    L +LM  C   +VD+   +V
Sbjct: 955 GLCKEFKIDDAFH--LKQLMESC-GLKVDVVTYNV 986



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 203/455 (44%), Gaps = 40/455 (8%)

Query: 38   ATAEYANGFRH----DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED----IFL 89
            A + Y N  RH    D  T+  ++  L        A++ +  + ++ C I E     + +
Sbjct: 598  AFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLV 657

Query: 90   SICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
             IC+     H  LD A+ + +KM      P   +Y  +L    +  ++  A    + M E
Sbjct: 658  GICK-----HGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLE 712

Query: 149  IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCRLGKI 207
             G+ P   +   L+  L  N G + AA  +F+E+    G   D   Y +++NG  + G+I
Sbjct: 713  KGLVPDTIAYTCLLNGLV-NEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQI 771

Query: 208  YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             E + L + M      P+  +Y  L++G  +   +   + L+ +M  +G++P+  TY  L
Sbjct: 772  NEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLL 831

Query: 268  MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG- 326
            + GLC+ G    A++ L+ M+ +   P+ + +  L+    ++ K+  A+++   MK  G 
Sbjct: 832  IFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGD 891

Query: 327  ------LKPDAGLYG---------KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
                  LK D    G          I+   C  GK +EA      ++  G+ P   T++ 
Sbjct: 892  IDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFT- 950

Query: 372  HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                  T++ GLCK    + AF +   M +  + VD +TY+ LIT  C K  I  +  + 
Sbjct: 951  ------TLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLY 1004

Query: 431  DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +E+   G LP+  T+  +  A++    M+   +LL
Sbjct: 1005 EEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLL 1039



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 164/353 (46%), Gaps = 19/353 (5%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN-KEKCDITEDIFLSICRGYGRVHRPLD 103
            G   D   ++ +++ LV+  Q + A  +   +  KE        + S+  GY +  +  +
Sbjct: 714  GLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINE 773

Query: 104  AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              R+   M E    P+  SY  ++   +++ QL      YR M + GI+P   +  +LI 
Sbjct: 774  IERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIF 833

Query: 164  ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF--------- 214
             LC+  G ++ A K   +M   G  PD+  +  LI       K+  A +LF         
Sbjct: 834  GLCE-YGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDI 892

Query: 215  -------KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
                   ++M+     P+ V  +S++ GLC+   VEEA+ +F  +   G+ P + T+++L
Sbjct: 893  DGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTL 952

Query: 268  MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
            M GLCK      A  L Q+M S   + ++VTY+ L+ GLC +  + +A+++ + MK +GL
Sbjct: 953  MHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGL 1012

Query: 328  KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIRIHNTV 379
             P+   Y  +       G  Q+    L ++   GI P+ +   SL  R+ N +
Sbjct: 1013 LPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPSYKHPESLEWRMENAI 1065



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 180/434 (41%), Gaps = 99/434 (22%)

Query: 104 AMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           A+R+ D + ++ G +     Y   + ILV+      A    RH+   G   C A  + L+
Sbjct: 91  ALRMLDSIVQQSGLDRITHIYCMAVHILVQAQMPSQAMSVLRHLALTGFS-CSAIFSSLL 149

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDS-YTYGTLINGLCRLGKIYEAKE--------- 212
           + + +                   C P + ++   L+N   + GK+ +A           
Sbjct: 150 RTISR-------------------CDPTNLFSVDLLVNAYVKEGKVLDAAAAIFFMDECG 190

Query: 213 --------------------------LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
                                       KE   +     V T   ++N LC    + +A 
Sbjct: 191 FKASLFSCNNILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAE 250

Query: 247 RLFEEMRS----------------------------------KGVEPNVFTYSSLMDGLC 272
            + ++M++                                   G+E +++TY+ ++D LC
Sbjct: 251 SMLQKMKNCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLC 310

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K   S++A  LL+ M      P+  +Y+TL++G   EGK+  A+ I ++M  Q LKP   
Sbjct: 311 KLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVA 370

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRA 391
            Y  +I  +C  G+  EA   L EM + G+ P+ LT+S        ++ G CK +    A
Sbjct: 371 TYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYS-------ALLNGYCKHSKLGPA 423

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             +   +R+RSIS++   Y+ LI  FC+ G++ K+ +I+  ++ DG  PD  T+SA++  
Sbjct: 424 LDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALING 483

Query: 452 LWDRRKMRQAAELL 465
           +     + +  E+L
Sbjct: 484 MCKMGMIHETKEIL 497


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/525 (27%), Positives = 233/525 (44%), Gaps = 69/525 (13%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           K + +   K+    V  ++  +KD++ A   F  A  +  +G+ H   T++LMI +L  A
Sbjct: 138 KQLERLKFKLNPGLVCDVVVNQKDLHLAKCFFTWAGQQ--DGYSHTVGTYTLMIKRLAGA 195

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
            +      +L  + KE   I+  +  S+ R +G  +    A+ +F++MK FGC P+   Y
Sbjct: 196 QETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMY 255

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             VL +LV+      A   +  + +  IQP   +  + + +  + SG +D A +  +EM 
Sbjct: 256 NFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNR-SGRLDPAAEPIQEMI 314

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             G  P  +T+  LI+ L + G I EA + F  M+   CSP VVTYT+L+NGL ++  +E
Sbjct: 315 KSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLE 374

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           EA  +F EM+     P+   Y++L+DGL K G +  A  L + M  +   PN+ TY+ ++
Sbjct: 375 EACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMI 434

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV----- 358
           + L K G+  EA ++   +K QG  PD   Y  +I      G+  +    + EMV     
Sbjct: 435 SVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGE 494

Query: 359 -------------------------------LGGITPNRLTWSLHIRIHN---------- 377
                                          LG IT N L  +    IHN          
Sbjct: 495 CIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAF---IHNGHVDEAVKLL 551

Query: 378 ----------------TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
                           T+V GL K    + A  +   M  +      +TYSSL+  F K+
Sbjct: 552 EVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKR 611

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
               +S  + DE+V  GC+ D  T+S V+  L     + QA ++ 
Sbjct: 612 DQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVF 656



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 214/415 (51%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ ++  L  A +   A  LL  + K+ C+ +   + S+   + +  +  +++ +FD+M
Sbjct: 565 TYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEM 624

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC     +Y  V+  L + + +  A   +  M+E G++P + +   L+ +L K+   
Sbjct: 625 VRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDE-K 683

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A +IF E+      PD++ Y  ++NGL +  ++ EA +L   M+ +   P + TYTS
Sbjct: 684 IDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTS 743

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++GL +S  +EEA  +F +M  +G EP+V  Y+SLMD L KGG  S A+ + + M  KR
Sbjct: 744 LLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKR 803

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++VTYS+L++ L KEG+++EA    +    +G  P+ G+Y  +I  F   G    A 
Sbjct: 804 CVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRAL 863

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
              +EM      PN +T+       N ++ GL K    N A ++   M       D +TY
Sbjct: 864 ELFEEMQRRQCPPNIVTY-------NNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTY 916

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + LI    K G + ++      +   G +PD  T+++++ +L    K+ +A EL 
Sbjct: 917 NILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELF 971



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 134/435 (30%), Positives = 223/435 (51%), Gaps = 12/435 (2%)

Query: 30   KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
            ++L +FD    +   G   D ST+SL+I+ L  ++    A D+  R+ +E  +     + 
Sbjct: 616  ESLSLFDEMVRK---GCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYK 672

Query: 90   SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            ++     +  +   A+++F++++E    P    Y  ++  LV+ N++  A +    M+  
Sbjct: 673  TLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQ 732

Query: 150  GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
             I P + +   L+  L K SG ++ AF +F +M   G  PD   Y +L++ L + GK+  
Sbjct: 733  NILPDLFTYTSLLDGLGK-SGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSH 791

Query: 210  AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            A  +F+ M  K C P VVTY+SLI+ L +   VEEA   FE   SKG  PNV  YSSL+D
Sbjct: 792  ALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLID 851

Query: 270  GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
               K G   +A+EL + M  ++  PNIVTY+ LL+GL K G+L  A ++L+ M+  G  P
Sbjct: 852  SFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVP 911

Query: 330  DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
            D   Y  +I     +G   EA ++   M   GI P+ +T++       ++++ L K D  
Sbjct: 912  DLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFT-------SLIESLGKVDKL 964

Query: 389  NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
              A +++ SM     +   +TY+ LI    + G +H++A I  E+ + GC+PD  T   +
Sbjct: 965  LEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024

Query: 449  MTALWDRRKMRQAAE 463
               L  R +   A E
Sbjct: 1025 KRILSVREQQFHALE 1039



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 218/455 (47%), Gaps = 40/455 (8%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +++ L  A +   A ++   + +  C      + ++  G G+      A  +F +M
Sbjct: 359 TYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEM 418

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+ G  P  ++Y  ++++L +  +   A++ +  ++E G  P V + N LI  L K  G 
Sbjct: 419 KDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGK-GGQ 477

Query: 172 MDAAFKIFREMPNRG----CTPDS---------------------------YTYGTLING 200
           MD    I +EM  +G     + DS                            TY TL++ 
Sbjct: 478 MDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSA 537

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
               G + EA +L + M+   C PTVVTYT+L++GL ++  ++EA+ L  EM  +G EP+
Sbjct: 538 FIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPS 597

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           V TYSSLM    K     +++ L   M+ K    ++ TYS ++N LCK   + +A+++  
Sbjct: 598 VVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFG 657

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           RMK +G++P  G Y  ++S      K   A    +E+    + P+         ++N +V
Sbjct: 658 RMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTF-------VYNIMV 710

Query: 381 QGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GL K++  + A ++  SM+N++I  D  TY+SL+    K G + ++  +  ++  +G  
Sbjct: 711 NGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHE 770

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           PD   ++++M  L    K+  A  +       +CV
Sbjct: 771 PDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCV 805



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 206/429 (48%), Gaps = 44/429 (10%)

Query: 39  TAEYAN-GFRH-DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96
           T EY + GF+     T++ ++S  +       A  LL+ + K +C  T   + ++  G G
Sbjct: 515 TVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLG 574

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +  R  +A+ +  +M++ GCEP+  +Y +++A   + +Q + +   +  M   G    V+
Sbjct: 575 KAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVS 634

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + +++I  LCK S  +D A  +F  M   G  P    Y TL++ L +  KI  A ++F E
Sbjct: 635 TYSLVINCLCK-SDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNE 693

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           ++  +  P    Y  ++NGL +S  V+EA +L + M+++ + P++FTY+SL+DGL K G 
Sbjct: 694 LQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGR 753

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A  +   M  + H P++V Y++L++ L K GKL  A+ I   M  +   PD   Y  
Sbjct: 754 LEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSS 813

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL 396
           +I      G+ +EA  F +  +  G TPN                               
Sbjct: 814 LIDSLGKEGRVEEAYYFFENSISKGCTPN------------------------------- 842

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
                 + V    YSSLI  F KKG + ++  + +E+    C P+  T++ +++ L    
Sbjct: 843 ------VGV----YSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAG 892

Query: 457 KMRQAAELL 465
           ++  A +LL
Sbjct: 893 RLNVAEKLL 901



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 41/251 (16%)

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           S TV TYT +I  L  ++  +  +++   M  +G   ++   +SL+         S A+E
Sbjct: 179 SHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALE 238

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   M S    P+   Y+ +L  L K G    AV +  ++    ++PDA  +   +  F 
Sbjct: 239 IFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFN 298

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
             G+   AA  + EM+  GI P          +H                          
Sbjct: 299 RSGRLDPAAEPIQEMIKSGIDPG---------VH-------------------------- 323

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
                 T++ LI    K G+I ++ +  + +    C P+  T++ ++  L    ++ +A 
Sbjct: 324 ------TFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEAC 377

Query: 463 ELLLLELMNKC 473
           E+ +    N C
Sbjct: 378 EVFVEMKENNC 388


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 228/473 (48%), Gaps = 35/473 (7%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +  +QV++++   K + KA+ IF    A      +     ++ MI  L+   Q+    
Sbjct: 158 TPMELSQVIRMLGNAKMIGKAITIFYQIKARKC---QPTAQAYNSMIIMLIHEGQYEKVH 214

Query: 71  DLLDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           +L + ++ E  C      + ++   + ++ R   A+R+ ++MKE G +PT K Y  ++++
Sbjct: 215 ELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISL 274

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
             + + +  A   +  MR +  +P V +   LI+ L K +G +D A+  + EM    C P
Sbjct: 275 FFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGK-AGRIDEAYHFYHEMQREDCKP 333

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRL 248
           D+     +IN L + G++ +  +LF+EM    C P VVTY ++I  L +SKS V E    
Sbjct: 334 DTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSW 393

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           FE M+  G+ P+ FTYS L+DG CK     +AM LL+ M  K   P    Y +L++ L K
Sbjct: 394 FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
             +   A E+   +K       A +Y  +I      G+  +A N  DEM   G TPN   
Sbjct: 454 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYA 513

Query: 369 WSL----------------------------HIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
           ++                              I  +N ++ GL KT  P+RA ++  +M+
Sbjct: 514 YNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMK 573

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           N +I  D+++Y+++++     G   ++A ++ E+   G   D  T+S+++ A+
Sbjct: 574 NSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAI 626



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 42/379 (11%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG +     ++++IS     +    A  L + +    C      +  + RG G+  R  +
Sbjct: 259 NGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDE 318

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A   + +M+   C+P       ++  L +  +L    + +  M      P V + N +IK
Sbjct: 319 AYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIK 378

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL ++   +   F  F  M   G +P  +TY  LI+G C+  +I +A  L +EM+ K   
Sbjct: 379 ALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFP 438

Query: 224 PTVVTYTSLINGLCQSK-----------------------------------SVEEAMRL 248
           P    Y SLI+ L ++K                                    +++A+ L
Sbjct: 439 PCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINL 498

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F+EM   G  PNV+ Y++LM GL +     +A+  ++ M      P+I +Y+ +LNGL K
Sbjct: 499 FDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAK 558

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G    A+E+L  MK   +KPDA  Y  ++S     G ++EAA  + EM   G   + +T
Sbjct: 559 TGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLIT 618

Query: 369 WSLHIRIHNTVVQGLCKTD 387
           +S       ++++ + K D
Sbjct: 619 YS-------SILEAIGKVD 630



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 113/497 (22%), Positives = 206/497 (41%), Gaps = 95/497 (19%)

Query: 6   MFKWST-----------KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW             ++    V ++++ +  VN  +  F  A  +    ++HD ST+ 
Sbjct: 70  IFKWGPDAERALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKK--RNYQHDTSTYM 127

Query: 55  LMISKLVSANQFRPAEDLL-DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
            +I  L    Q+     ++ + V    C +T      + R  G       A+ +F ++K 
Sbjct: 128 ALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKA 187

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
             C+PT ++Y +++ +L+ E Q       Y  + E+                        
Sbjct: 188 RKCQPTAQAYNSMIIMLIHEGQ-------YEKVHEL------------------------ 216

Query: 174 AAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
                + EM N G C PD+ TY  LI+  C+LG+   A  L  EM+     PT   YT +
Sbjct: 217 -----YNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMI 271

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+   +  +V  A+ LFEEMR     P+VFTY+ L+ GL K G   +A      M  +  
Sbjct: 272 ISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDC 331

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII-SCFCDIGKYQEAA 351
           +P+ V  + ++N L K G+L + +++ + M +    P+   Y  II + F    +  E  
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVF 391

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP----------------------- 388
           ++ + M   GI+P+  T+S+       ++ G CKT+                        
Sbjct: 392 SWFERMKGSGISPSPFTYSI-------LIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAY 444

Query: 389 -------------NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
                        + A +++  ++    S  +  Y+ +I    K G +  +  + DE+  
Sbjct: 445 CSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSK 504

Query: 436 DGCLPDEGTWSAVMTAL 452
            GC P+   ++A+M+ L
Sbjct: 505 LGCTPNVYAYNALMSGL 521


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 227/437 (51%), Gaps = 19/437 (4%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG----- 94
           A +A G   D    +L+I+ +          ++L ++    C+     + ++ +G     
Sbjct: 176 ALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAK 235

Query: 95  -YGRVHRPLDAM----RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            +G V   +D M        +M + GC P  + Y T++  + +E   ++A      M   
Sbjct: 236 RWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSY 295

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G++P V   N ++K +C ++   + A ++  EM  + C  D  T+  L++  C+ G +  
Sbjct: 296 GLKPNVVCYNTVLKGIC-SADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDR 354

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
             EL ++M    C P V+TYT++ING C+   ++EA+ L + M S G +PN  +Y+ ++ 
Sbjct: 355 VIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLK 414

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC       A EL+  MI +   PN VT++T++N LCK+G +++A+E+L +M + G  P
Sbjct: 415 GLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNP 474

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
           D   Y  +I      GK +EA   L+ M+  GITPN +T+S       ++   L +    
Sbjct: 475 DLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYS-------SMAFALAREGRI 527

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           ++  Q++ ++++ +I  D++ Y+++I+  CK+ +   +   +  +V +GC+P+E T++A+
Sbjct: 528 DKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTAL 587

Query: 449 MTALWDRRKMRQAAELL 465
           +  L     + +A +LL
Sbjct: 588 IKGLASEGLLCEAQDLL 604



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 195/402 (48%), Gaps = 20/402 (4%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  + RG     R  DA+ V D+M    C P P  Y  ++           A R    + 
Sbjct: 119 YFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALH 178

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC---RL 204
             G      + N++I A+C + G +D   ++ R++P  GC  D  +Y  ++ GLC   R 
Sbjct: 179 AKGSTLDTGNCNLVINAIC-DQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRW 237

Query: 205 GKIYE-------AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           G + E         E   +M    C+P +  Y ++I+G+C+    E A  +   M S G+
Sbjct: 238 GDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGL 297

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
           +PNV  Y++++ G+C      +A ELL  M  K    + VT++ L++  C+ G +   +E
Sbjct: 298 KPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIE 357

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +L++M   G  PD   Y  +I+ FC  G   EA   L  M   G  PN +++++      
Sbjct: 358 LLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTI------ 411

Query: 378 TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            V++GLC T+    A ++   M  +    + +T++++I   CKKG + ++  ++ +++++
Sbjct: 412 -VLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVN 470

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           GC PD  ++S V+  L    K  +A ELL + ++NK +   V
Sbjct: 471 GCNPDLISYSTVIDGLGKAGKTEEALELLNV-MINKGITPNV 511



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 192/386 (49%), Gaps = 19/386 (4%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAIL--------VEE--NQLKLAFRFYRHMREIGIQ 152
           + + +  K+  FGCE    SY  VL  L        VEE  +++         M + G  
Sbjct: 204 EGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCT 263

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P +     +I  +CK  G  + A +I   MP+ G  P+   Y T++ G+C   +  +A+E
Sbjct: 264 PDIRMYATIIDGICKE-GHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEE 322

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           L  EM  K C    VT+  L++  CQ+  V+  + L E+M   G  P+V TY+++++G C
Sbjct: 323 LLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFC 382

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G   +A+ LL+ M S   +PN ++Y+ +L GLC   +  +A E++ RM  QG  P+  
Sbjct: 383 KEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPV 442

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-A 391
            +  II+  C  G  ++A   L +M++ G  P+ +++S       TV+ GL K      A
Sbjct: 443 TFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYS-------TVIDGLGKAGKTEEA 495

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            ++   M N+ I+ + +TYSS+     ++G I K  ++ D +       D   ++AV+++
Sbjct: 496 LELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISS 555

Query: 452 LWDRRKMRQAAELLLLELMNKCVEAE 477
           L  RR+   A + L   + N C+  E
Sbjct: 556 LCKRRETDLAIDFLAYMVSNGCMPNE 581



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 168/341 (49%), Gaps = 24/341 (7%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           R +   G    V   N ++   C+  G ++AA ++   +P     P++YTY  ++ GLC 
Sbjct: 73  RALDAAGNAAGVVDYNAMVAGYCR-VGQVEAARRLAAAVP---VPPNAYTYFPVVRGLCG 128

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G+I +A  +  EM +++C P    Y  +I   C+S     A+R+ E + +KG   +   
Sbjct: 129 RGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGN 188

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD--- 320
            + +++ +C  GC  + +E+L+ +       +IV+Y+ +L GLC   +  +  E++D   
Sbjct: 189 CNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMV 248

Query: 321 -------RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
                  +M   G  PD  +Y  II   C  G ++ A   L  M   G+ PN       +
Sbjct: 249 KVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPN-------V 301

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
             +NTV++G+C  D   +A ++   M  ++  +D +T++ L+  FC+ G + +   ++++
Sbjct: 302 VCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQ 361

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++  GC+PD  T++ V+        + +A  ++LL+ M  C
Sbjct: 362 MLEHGCMPDVITYTTVINGFCKEGLIDEA--VMLLKNMPSC 400



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 1/248 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++ +I+          A  LL  +    C      +  + +G     R +D
Sbjct: 365 HGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVD 424

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +  +M + GC P P ++ T++  L ++  ++ A    + M   G  P + S + +I 
Sbjct: 425 AEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVID 484

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K +G  + A ++   M N+G TP+  TY ++   L R G+I +  ++F  ++     
Sbjct: 485 GLGK-AGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIR 543

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              V Y ++I+ LC+ +  + A+     M S G  PN  TY++L+ GL   G   +A +L
Sbjct: 544 SDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDL 603

Query: 284 LQMMISKR 291
           L  + S+R
Sbjct: 604 LSELCSRR 611


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 217/455 (47%), Gaps = 31/455 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G      T+  ++  L    +F     ++D + +     TE    S+  G  R  + +DA
Sbjct: 291 GLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDA 350

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + +++K+ G  P+   Y  ++  L ++ +   A   ++ M E G+     + ++LI +
Sbjct: 351 FDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDS 410

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+  G +D A     +M   G     Y Y +LING C+LG +  A   F EM  K   P
Sbjct: 411 FCRR-GKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKP 469

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           TVV+YTSLI+G C    + EA RL+ EM  KG+ PN +T+++L+  L +    + A  L 
Sbjct: 470 TVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLF 529

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+ +   PN VTY+ ++ G CKEG   +A E+L++M  +GL PD   Y  +IS  C  
Sbjct: 530 DEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCST 589

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWS--LH--------------------------IRIH 376
           G+  EA  F+D++       N + +S  LH                          +  +
Sbjct: 590 GRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCY 649

Query: 377 NTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             ++ G  K  D +  F +  +M ++ +  D + Y+S+I  + K G + K+  I D ++ 
Sbjct: 650 AVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMID 709

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +GC P+  T++ ++  L  +  +   AELL  E++
Sbjct: 710 EGCTPNIVTYTTLINELC-KAGLMDKAELLWKEML 743



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 220/449 (48%), Gaps = 14/449 (3%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T  +VL  +   + V+  LV+F    +    G R D   +  +I        F  A++++
Sbjct: 195 TLGEVLNGLAKIRRVDMVLVLFGEILSM---GIRPDIYIYVAVIRSFCELKNFAKAKEMI 251

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
            R+  E  D+   ++  +  G  +  R  +A+ + + + + G   +  +Y T++  L + 
Sbjct: 252 QRM--ESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKV 309

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
            + ++       M E+G  P  A+L+ L++ L +    +D AF +   +   G  P  + 
Sbjct: 310 QEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVD-AFDLVNRVKKVGAMPSLFV 368

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y  LIN LC+ GK  EA+ LFKEM  K      VTY+ LI+  C+   ++ A+    +M 
Sbjct: 369 YNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMI 428

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             G++  V+ Y+SL++G CK G  S A+     MI K  +P +V+Y++L++G C +GKL 
Sbjct: 429 MAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLH 488

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA  +   M  +G+ P+   +  +IS      +  +A    DEM+   + PN +T+    
Sbjct: 489 EAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTY---- 544

Query: 374 RIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              N +++G CK  +  +AF++   M  + +  D+ TY  LI+  C  G + ++ + +D+
Sbjct: 545 ---NVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDD 601

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           L  +    +E  +SA++       ++R A
Sbjct: 602 LHREHFKLNEMCYSALLHGYCKEGRLRDA 630



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 201/380 (52%), Gaps = 14/380 (3%)

Query: 88  FLSICRGY---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           + S+  GY   G++H   +A R++ +M   G  P   ++ T+++ L   N++  AFR + 
Sbjct: 474 YTSLISGYCNKGKLH---EAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFD 530

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E  + P   + NV+I+  CK   T+  AF++  +M  +G  PD+YTY  LI+ LC  
Sbjct: 531 EMLEQNMMPNEVTYNVMIEGHCKEGNTV-KAFELLNQMVQKGLVPDTYTYRPLISSLCST 589

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G++ EAK+   ++  +      + Y++L++G C+   + +A+ +  EM  +GV+ ++  Y
Sbjct: 590 GRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCY 649

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + L+DG  K   +S    LL+ M  +R RP+ V Y+++++G  K G +++A  I D M  
Sbjct: 650 AVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMID 709

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +G  P+   Y  +I+  C  G   +A     EM++   TPN +T+     + +   +G  
Sbjct: 710 EGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCF--LDHLAREG-- 765

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
                +A Q++  M  + +  ++++Y+ L+  FCK G + ++ +++DE++ +   PD  T
Sbjct: 766 --SMEKAVQLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCIT 822

Query: 445 WSAVMTALWDRRKMRQAAEL 464
           +S ++     R  +  A E 
Sbjct: 823 YSTIIYQCCRRGNLDGAIEF 842



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 222/507 (43%), Gaps = 95/507 (18%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNK-----------------EKCDITEDI- 87
           F H   +F ++I  LV+AN F PA  LL  +                   EKCD    + 
Sbjct: 101 FNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCDFISSLG 160

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  + + Y +  R  D++ +F  M++    P  ++   VL  L +  ++ +    +  + 
Sbjct: 161 FDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEIL 220

Query: 148 EIGIQP------------C---------------------VASLNVLIKALCKNSGTMDA 174
            +GI+P            C                     V   NVLI  LCKN    +A
Sbjct: 221 SMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEA 280

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRL------------------------------ 204
             +I   +  +G T    TY TL+ GLC++                              
Sbjct: 281 V-EIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVE 339

Query: 205 -----GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
                GK+ +A +L   ++     P++  Y +LIN LC+    +EA  LF+EM  KG+  
Sbjct: 340 GLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCA 399

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           N  TYS L+D  C+ G    A+  L  MI    +  +  Y++L+NG CK G L  AV   
Sbjct: 400 NDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFF 459

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           D M  +GLKP    Y  +IS +C+ GK  EA     EM   GI PN  T++       T+
Sbjct: 460 DEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFT-------TL 512

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +  L + +    AF+++  M  +++  + +TY+ +I   CK+G+  K+  +++++V  G 
Sbjct: 513 ISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGL 572

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
           +PD  T+  ++++L    ++ +A + +
Sbjct: 573 VPDTYTYRPLISSLCSTGRVCEAKKFI 599



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 168/324 (51%), Gaps = 2/324 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+  +IS L S  +   A+  +D +++E   + E  + ++  GY +  R  DA
Sbjct: 571 GLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDA 630

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + V  +M + G +     Y  ++   ++E      F   ++M +  ++P       +I  
Sbjct: 631 LGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDG 690

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K +G++  AF I+  M + GCTP+  TY TLIN LC+ G + +A+ L+KEM     +P
Sbjct: 691 YSK-AGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTP 749

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY   ++ L +  S+E+A++L  +M  KG+  N  +Y+ L+ G CK G   +A +LL
Sbjct: 750 NHVTYCCFLDHLAREGSMEKAVQLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLL 808

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             MI     P+ +TYST++   C+ G L  A+E  D M  +GLKPD   Y  +I   C  
Sbjct: 809 DEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIA 868

Query: 345 GKYQEAANFLDEMVLGGITPNRLT 368
           G+  +A    D+M+  G+ PN+ T
Sbjct: 869 GELGKAFELRDDMIRRGVKPNQAT 892



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 181/407 (44%), Gaps = 45/407 (11%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             G   +  TF+ +IS L  AN+   A  L D + ++     E  +  +  G+ +    +
Sbjct: 499 GKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTV 558

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILV------------------------------- 131
            A  + ++M + G  P   +Y  +++ L                                
Sbjct: 559 KAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALL 618

Query: 132 ----EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
               +E +L+ A    R M + G+   +    VLI    K   T  A F + + M ++  
Sbjct: 619 HGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDT-SAVFGLLKNMHDQRL 677

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            PD   Y ++I+G  + G + +A  ++  M  + C+P +VTYT+LIN LC++  +++A  
Sbjct: 678 RPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAEL 737

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L++EM      PN  TY   +D L + G   +A++L   M+ K    N V+Y+ L+ G C
Sbjct: 738 LWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDML-KGLLANTVSYNILVRGFC 796

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K G+++EA ++LD M    + PD   Y  II   C  G    A  F D M+  G+ P+ L
Sbjct: 797 KLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTL 856

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
            +       N ++ G C   +  +AF++   M  R +  +  T+ SL
Sbjct: 857 AY-------NFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSL 896



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 127/261 (48%), Gaps = 2/261 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D   ++++I   +          LL  ++ ++    + I+ S+  GY +      A
Sbjct: 641 GVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKA 700

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             ++D M + GC P   +Y T++  L +   +  A   ++ M      P   +    +  
Sbjct: 701 FGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDH 760

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L +  G+M+ A ++  +M  +G   ++ +Y  L+ G C+LG++ EA +L  EM   A  P
Sbjct: 761 LAR-EGSMEKAVQLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFP 818

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +TY+++I   C+  +++ A+  ++ M +KG++P+   Y+ L+ G C  G   +A EL 
Sbjct: 819 DCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELR 878

Query: 285 QMMISKRHRPNIVTYSTLLNG 305
             MI +  +PN  T+ +L +G
Sbjct: 879 DDMIRRGVKPNQATHKSLSHG 899


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 210/418 (50%), Gaps = 31/418 (7%)

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQL 136
           K+     + IF ++ RG    ++  DA+ +F K+ +E  CEP    Y TV+  L ++   
Sbjct: 135 KKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHT 194

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           + AF   R M +   +P     +++I A CK+ G +D A  +  EM  +   PD +TY T
Sbjct: 195 QKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKD-GMLDGATSLLNEMKQKSIPPDIFTYST 253

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           LI+ LC+L +    + LF EM      P V T+ S+I+GLC+   VE+A  +   M  KG
Sbjct: 254 LIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKG 313

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           V+P+V TY+ ++DG    G   +A E+   MI+K   PNI++Y+ L+NG  ++ K+ EA+
Sbjct: 314 VDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAM 373

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW------- 369
           ++   +  +GLKP       ++    ++G+ + A NF DEM+  G  P+  T        
Sbjct: 374 QVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGY 433

Query: 370 ---------------------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
                                  +I+I+  V+ GLCK    ++A   +  +    +  D 
Sbjct: 434 FKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDV 493

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY+++I+ +C++G + ++  ++ ++  +GCL D  T++ ++       K+ +    L
Sbjct: 494 ITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFL 551



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 179/365 (49%), Gaps = 13/365 (3%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLDAMRVFDK 110
           +S++I           A  LL+ + ++   I  DIF   ++     ++ +  +   +F +
Sbjct: 216 YSIVIDAFCKDGMLDGATSLLNEMKQKS--IPPDIFTYSTLIDALCKLSQWENVRTLFLE 273

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M      P   ++ +V+  L +E +++ A    R+M E G+ P V + N++I       G
Sbjct: 274 MIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLR-G 332

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +D A +IF  M N+   P+  +Y  LING  R  KI EA ++ +E+  K   P++VT  
Sbjct: 333 QVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCN 392

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            L++GL +    + A   F+EM S G  P+++T+ +L+ G  K G   +AM     +  +
Sbjct: 393 VLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERR 452

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
           R   NI  Y+ +++GLCK GKL +A    +++ L GL PD   Y  +IS +C  G   EA
Sbjct: 453 REDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEA 512

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLT 409
            + L +M   G   +        R +N +V+G  +++     + +L  +  +S S ++ T
Sbjct: 513 KDMLRKMEDNGCLADN-------RTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAAT 565

Query: 410 YSSLI 414
              L+
Sbjct: 566 VELLM 570



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 149/335 (44%), Gaps = 44/335 (13%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME-------- 218
           +N   +D AF +FR+M      P   ++  L+  L  +        LF+E+         
Sbjct: 48  ENVKCLDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHE 107

Query: 219 ---------------------------TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
                                       K      V + +L+ GL     V++A+ LF++
Sbjct: 108 FILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKK 167

Query: 252 M-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           + R    EPN   Y ++M+GLCK G + +A +LL++M     +PN   YS +++  CK+G
Sbjct: 168 LVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDG 227

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L  A  +L+ MK + + PD   Y  +I   C + +++       EM+   I PN  T+ 
Sbjct: 228 MLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF- 286

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N+V+ GLCK      A ++   M  + +  D +TY+ +I  +  +G + ++  I
Sbjct: 287 ------NSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREI 340

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D ++     P+  +++ ++     ++K+ +A ++
Sbjct: 341 FDSMINKSIEPNIISYNILINGYARQKKIDEAMQV 375



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 139/281 (49%), Gaps = 1/281 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I  L    +   AE+++  + ++  D     +  I  GYG   +   A  +FD M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
                EP   SY  ++     + ++  A +  R + + G++P + + NVL+  L +  G 
Sbjct: 345 INKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE-LGR 403

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
             +A   F EM + G  PD YT+ TL+ G  + G + EA   F ++E +     +  YT+
Sbjct: 404 TKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTA 463

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+GLC++  +++A   FE++   G+ P+V TY++++ G C+ G   +A ++L+ M    
Sbjct: 464 VIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNG 523

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
              +  TY+ ++ G  +  K+ E    L+ +  +    +A 
Sbjct: 524 CLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAA 564



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 128/276 (46%), Gaps = 10/276 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A  LF++M      P+VV+++ L+  L   K     + LF E+    +  + F  S ++
Sbjct: 55  DAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSIVV 114

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL- 327
           +  C    +     +L +   K    N V ++TLL GL  E K+++AV +  ++  + + 
Sbjct: 115 NSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRENIC 174

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           +P+  +YG +++  C  G  Q+A + L  M  G   PN   +S+       V+   CK  
Sbjct: 175 EPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSI-------VIDAFCKDG 227

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A  +   M+ +SI  D  TYS+LI   CK         +  E++     P+  T++
Sbjct: 228 MLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFN 287

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +V+  L    K+  A E++   ++ K V+ +V   N
Sbjct: 288 SVIDGLCKEGKVEDAEEIMRY-MIEKGVDPDVITYN 322



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 8/205 (3%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G   + R   A   FD+M   G  P   ++ T+L    +   ++ A   +  +    
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
               +     +I  LCKN G +D A   F ++P  G  PD  TY  +I+G C+ G + EA
Sbjct: 454 EDTNIQIYTAVIDGLCKN-GKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEA 512

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           K++ ++ME   C     TY  ++ G  +S  V E     EE+  K       T   LMD 
Sbjct: 513 KDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDI 572

Query: 271 LCKGGCSSQAMELLQMMISKRHRPN 295
           + +          L  MI + HR N
Sbjct: 573 IAEDPS-------LLNMIPEFHRDN 590


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 223/448 (49%), Gaps = 63/448 (14%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLV-SANQFRPAEDLLDRVNKEKCDITEDIFL 89
           A+  FD A  +  +G++HD  +++ ++  LV S +QFR                      
Sbjct: 10  AIQFFDWAGEQ--DGYKHDVHSYNHLLDILVKSGHQFRTG-------------------- 47

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
                           +V+  +   GC P   ++  ++    +  Q   A  F R + E 
Sbjct: 48  ----------------KVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEF 91

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            + P V   N LI  L K+ G  D A K+F  M +    PD +TY T+I+GLC+ G + +
Sbjct: 92  SVAPDVYIFNFLIHGLFKD-GNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEK 150

Query: 210 AKELFKEMETKA--CSPTVVTYTSLIN-GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           A+EL +EM  +    +P +VTY +LIN G+C+   VEEA+ + + M+  G  P+V TY+S
Sbjct: 151 ARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNS 210

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++  LC  G   +A E+L+ M      P++VT++TLL+G CK G L  A+E+L+ M  + 
Sbjct: 211 IIHALCVAGRVVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRALEVLEEMCREN 267

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           + PD   Y  +++  C +G+ Q A   L+E+V  G  P+ + ++       ++V GLCK+
Sbjct: 268 ILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYT-------SLVDGLCKS 320

Query: 387 -DPNRAFQVYLSMRNRSISVDSL---------TYSSLITCFCKKGDIHKSARIVDELVLD 436
            +   A ++   M  R I  + +         TY+ ++    K G I K+  ++ +LV  
Sbjct: 321 GEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVAR 380

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           G +PD  T++ ++  L    ++R+A +L
Sbjct: 381 GYVPDVVTYNTLIDGLCKANRVREACDL 408



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 221/433 (51%), Gaps = 35/433 (8%)

Query: 29  NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88
           ++A+ +F++  +   N    D  T++ +IS L  +     A +LL+ + +       DI 
Sbjct: 114 DQAVKLFENMESSRVN---PDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIV 170

Query: 89  L-------SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
                    IC+  G V    +A+ + D MK  G  P   +Y +++  L    ++  A  
Sbjct: 171 TYNTLINAGICKD-GDVE---EALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAE 226

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
             + M      P + + N L+   CK +G +  A ++  EM      PD  TY  L+NGL
Sbjct: 227 ILKTM---SCSPDLVTFNTLLDGFCK-AGMLPRALEVLEEMCRENILPDVITYTILVNGL 282

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV---- 257
           CR+G++  A  L +E+  +   P V+ YTSL++GLC+S  +EEA +L +EM ++ +    
Sbjct: 283 CRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEM 342

Query: 258 -----EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
                 P +FTY+ ++ GL K G  S+A+ L+  ++++ + P++VTY+TL++GLCK  ++
Sbjct: 343 VSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRV 402

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           +EA ++ D M   G  P+    G ++   C +G+  +A + + EM      PN       
Sbjct: 403 REACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPN------- 455

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           + ++ +++ GLCK+D  + A  V  +MR + +++D   Y  LI      G + ++  + D
Sbjct: 456 VVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYD 515

Query: 432 ELVLDGCLPDEGT 444
           E+V  G LPD  T
Sbjct: 516 EMVARGFLPDGST 528



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 189/333 (56%), Gaps = 16/333 (4%)

Query: 138 LAFRFYRHMREI-GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           LA +F+    E  G +  V S N L+  L K SG      K+++++ + GC+P+  T+  
Sbjct: 9   LAIQFFDWAGEQDGYKHDVHSYNHLLDILVK-SGHQFRTGKVYKDLLHSGCSPNLVTFKI 67

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           LI G C+ G+   A E  + ++  + +P V  +  LI+GL +  + ++A++LFE M S  
Sbjct: 68  LIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSR 127

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK--RHRPNIVTYSTLLN-GLCKEGKLQ 313
           V P++FTY++++ GLCK G   +A ELL+ MI +  +  P+IVTY+TL+N G+CK+G ++
Sbjct: 128 VNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVE 187

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA+EILD MKL G  PD   Y  II   C  G+  EAA  L  M     +P+ +T+    
Sbjct: 188 EALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTF---- 240

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              NT++ G CK     RA +V   M   +I  D +TY+ L+   C+ G +  +  +++E
Sbjct: 241 ---NTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEE 297

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +V  G +PD   +++++  L    ++ +A +L+
Sbjct: 298 IVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLV 330



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 207/428 (48%), Gaps = 28/428 (6%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLDAMR 106
           D   F+ +I  L        A  L +  N E   +  DIF   ++  G  +      A  
Sbjct: 96  DVYIFNFLIHGLFKDGNPDQAVKLFE--NMESSRVNPDIFTYNTVISGLCKSGNLEKARE 153

Query: 107 VFDKMKEFGCEPTPK--SYITVL-AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           + ++M   G +  P   +Y T++ A + ++  ++ A      M+  G  P V + N +I 
Sbjct: 154 LLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIH 213

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           ALC     ++AA +I + M    C+PD  T+ TL++G C+ G +  A E+ +EM  +   
Sbjct: 214 ALCVAGRVVEAA-EILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENIL 269

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM-- 281
           P V+TYT L+NGLC+   V+ A  L EE+  +G  P+V  Y+SL+DGLCK G   +A   
Sbjct: 270 PDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKL 329

Query: 282 -------ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
                  E+L  M+S    P + TY+ +L GL K+G + +AV ++  +  +G  PD   Y
Sbjct: 330 VKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTY 389

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQ 393
             +I   C   + +EA +  DEM   G  PN +T         +VV GLC+    + A+ 
Sbjct: 390 NTLIDGLCKANRVREACDLADEMASLGCFPNDVTLG-------SVVFGLCRVGRVDDAWS 442

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           + + M  +  + + + Y+SLI   CK   +  +  ++D +   G   D+  +  ++ ++ 
Sbjct: 443 LVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMI 502

Query: 454 DRRKMRQA 461
              ++ +A
Sbjct: 503 HGGRVAEA 510



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/353 (31%), Positives = 171/353 (48%), Gaps = 16/353 (4%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           + DV +AL I D        G   D  T++ +I  L  A +   A ++L  ++   C   
Sbjct: 183 DGDVEEALEILDGMKLA---GPAPDVITYNSIIHALCVAGRVVEAAEILKTMS---CSPD 236

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              F ++  G+ +      A+ V ++M      P   +Y  ++  L    Q+++AF    
Sbjct: 237 LVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLE 296

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR---------GCTPDSYTYG 195
            +   G  P V +   L+  LCK SG ++ A K+ +EM  R            P  +TY 
Sbjct: 297 EIVRQGYIPDVIAYTSLVDGLCK-SGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYN 355

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            ++ GL + G I +A  L  ++  +   P VVTY +LI+GLC++  V EA  L +EM S 
Sbjct: 356 IVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASL 415

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G  PN  T  S++ GLC+ G    A  L+  M  KRH PN+V Y++L++GLCK  ++ +A
Sbjct: 416 GCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDA 475

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
             +LD M+ QG+  D   Y K+I      G+  EA    DEMV  G  P+  T
Sbjct: 476 CVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGST 528



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 155/290 (53%), Gaps = 13/290 (4%)

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G   D ++Y  L++ L + G  +   +++K++    CSP +VT+  LI G C++     A
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRA 81

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           +     +    V P+V+ ++ L+ GL K G   QA++L + M S R  P+I TY+T+++G
Sbjct: 82  LEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISG 141

Query: 306 LCKEGKLQEAVEILDRMKLQGLK--PDAGLYGKIISC-FCDIGKYQEAANFLDEMVLGGI 362
           LCK G L++A E+L+ M  +G K  PD   Y  +I+   C  G  +EA   LD M L G 
Sbjct: 142 LCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGP 201

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
            P+ +T+       N+++  LC     R  +    ++  S S D +T+++L+  FCK G 
Sbjct: 202 APDVITY-------NSIIHALCVA--GRVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGM 252

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           + ++  +++E+  +  LPD  T++ ++  L  R    Q A  LL E++ +
Sbjct: 253 LPRALEVLEEMCRENILPDVITYTILVNGLC-RVGQVQVAFYLLEEIVRQ 301



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 130/263 (49%), Gaps = 10/263 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---------GRVH 99
           D  T++++++ L    Q + A  LL+ + ++        + S+  G           ++ 
Sbjct: 271 DVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLV 330

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           + + A  +  +M      P   +Y  VL  L+++  +  A      +   G  P V + N
Sbjct: 331 KEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYN 390

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            LI  LCK +   +A   +  EM + GC P+  T G+++ GLCR+G++ +A  L  EM  
Sbjct: 391 TLIDGLCKANRVREAC-DLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSR 449

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K  +P VV YTSLI+GLC+S  +++A  + + MR +GV  + F Y  L+  +  GG  ++
Sbjct: 450 KRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAE 509

Query: 280 AMELLQMMISKRHRPNIVTYSTL 302
           AM +   M+++   P+  T  TL
Sbjct: 510 AMAMYDEMVARGFLPDGSTSKTL 532


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/435 (29%), Positives = 214/435 (49%), Gaps = 19/435 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDK 110
           T++++I     A +       L  V K+   +    F  + +G     R  DAM  V  +
Sbjct: 94  TYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRR 153

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REIGIQPCVASLNVLIKALCK 167
           M E GC P   SY  +L  L +EN+ + A      M   R  G  P V S N ++    K
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213

Query: 168 -------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
                   +  MD A ++   M   G  PD  TY ++++G C  G+  EA    K+M + 
Sbjct: 214 EGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 273

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P VVTY+SL+N LC++    EA ++F+ M  +G+EP++ TY +L+ G CK G   ++
Sbjct: 274 GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIES 333

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +L  +M+    +P+I+TY+TL++G C  GK+ EA ++L  M   G+KPD   YG +I+ 
Sbjct: 334 EKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLING 393

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF-QVYLSMR 399
           +C + +  +A     EMV  G++PN +T+       N ++QGL  T    A  ++Y+S+ 
Sbjct: 394 YCRVSRMDDALALFKEMVSSGVSPNIITY-------NIILQGLFHTRRTAAAKELYVSIT 446

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
                ++  TY+ ++   CK     ++ R+   L L     +  T++ ++ AL    +M 
Sbjct: 447 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMD 506

Query: 460 QAAELLLLELMNKCV 474
           +A +L      N  V
Sbjct: 507 EAKDLFAAHSANGLV 521



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 187/381 (49%), Gaps = 22/381 (5%)

Query: 99  HRPLDAMRVFDKMKEFGC---EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           H P  A+  +++M   G     PT  +Y  ++       +L L F    ++ + G +   
Sbjct: 68  HSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDA 127

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            +   L+K LC +  T DA   + R M   GC PD ++Y  L+ GLC   +  EA EL  
Sbjct: 128 ITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLH 187

Query: 216 EMETK---ACSPTVVTYTSLINGLCQ--------SKSVEEAMRLFEEMRSKGVEPNVFTY 264
            M         P VV+Y +++NG  +        ++++++AM +   M   GV P+  TY
Sbjct: 188 MMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTY 247

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +S++ G C  G   +A+  L+ M S    PN+VTYS+L+N LCK G+  EA +I D M  
Sbjct: 248 NSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTK 307

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +GL+PD   Y  ++   C  G+  E+    D MV  G+ P+ +T+       NT++ G C
Sbjct: 308 RGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITY-------NTLIDGCC 360

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
                + A ++  SM +  +  D +TY +LI  +C+   +  +  +  E+V  G  P+  
Sbjct: 361 LAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNII 420

Query: 444 TWSAVMTALWDRRKMRQAAEL 464
           T++ ++  L+  R+   A EL
Sbjct: 421 TYNIILQGLFHTRRTAAAKEL 441



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 172/341 (50%), Gaps = 9/341 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + SI  GY    +P +A+    KM+  G EP   +Y +++  L +  +   A + +  M 
Sbjct: 247 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 306

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + G++P +A+   L++  CK    +++  K+F  M   G  PD  TY TLI+G C  GK+
Sbjct: 307 KRGLEPDIATYRTLLQGHCKEGRVIESE-KLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 365

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA +L   M +    P +VTY +LING C+   +++A+ LF+EM S GV PN+ TY+ +
Sbjct: 366 DEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNII 425

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + GL     ++ A EL   +     +  + TY+ +L+GLCK     EA+ +   + L  L
Sbjct: 426 LQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDL 485

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG-LCKT 386
           + +   +  +I      G+  EA +        G+ P+  T+SL     N + QG L + 
Sbjct: 486 QLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLM--AENLIEQGSLEEL 543

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           D      ++LSM     S DS   +S++    ++GDI ++ 
Sbjct: 544 D-----DLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAG 579



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 178/372 (47%), Gaps = 9/372 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T++ ++    S+ Q + A   L ++  +  +     + S+     +  R  +
Sbjct: 238 NGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTE 297

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++FD M + G EP   +Y T+L    +E ++  + + +  M  IG++P + + N LI 
Sbjct: 298 ARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLID 357

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C  +G MD A K+   M + G  PD  TYGTLING CR+ ++ +A  LFKEM +   S
Sbjct: 358 GCCL-AGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVS 416

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY  ++ GL  ++    A  L+  +   G +  + TY+ ++ GLCK   + +A+ +
Sbjct: 417 PNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRM 476

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            Q +     +    T++ ++  L K G++ EA ++       GL PD   Y  +     +
Sbjct: 477 FQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIE 536

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
            G  +E  +    M   G + +        R+ N++V+ L  + D  RA      +  + 
Sbjct: 537 QGSLEELDDLFLSMEENGCSADS-------RMLNSIVRKLLQRGDITRAGTYLFMIDEKH 589

Query: 403 ISVDSLTYSSLI 414
            S+++ T S L+
Sbjct: 590 FSLEASTASFLL 601


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 210/424 (49%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G+  D  T+  +I+ L    Q + A  LL  + K        ++ ++  G  +     
Sbjct: 153 AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVS 212

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +  ++ E G      +Y +++       + +   +    M    + P   + N+LI
Sbjct: 213 DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILI 272

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            ALCK    ++A   +   M  RG  PD  TY  L+ G C    ++EA+ELF  M  +  
Sbjct: 273 DALCKEGRILEAQ-GVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGL 331

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V+ Y  LI+G C++K V+EAM LF+E+ +K + P + +Y+SL+DGLC  G  S   +
Sbjct: 332 EPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKK 391

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M      P++VTY+ L++ LCKEG++ EA+ +L  M  +G+KP+   Y  ++  +C
Sbjct: 392 LLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYC 451

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
                  A +  + MV  G+ P+ L +       N ++ G CKT+  + A  ++  MR++
Sbjct: 452 LRNNVNVAKDIFNRMVKSGLEPDILNY-------NVLINGYCKTEMVDEAIVLFKEMRHK 504

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           ++  D  +Y+SLI   C  G I     ++DE+   G  PD  T++ ++ A    +   +A
Sbjct: 505 NLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKA 564

Query: 462 AELL 465
             L 
Sbjct: 565 ISLF 568



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 206/422 (48%), Gaps = 10/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I    S  +++    LL ++ +E  D  +  F  +     +  R L+A
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             V   M + G +P   +Y  ++        +  A   +  M + G++P V + NVLI  
Sbjct: 285 QGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK +  +D A  +F+E+ N+   P   +Y +LI+GLC  G+I   K+L  EM   A  P
Sbjct: 345 YCK-TKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPP 403

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY  LI+ LC+   + EA+ +   M  KGV+PN+ TY+++MDG C     + A ++ 
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+     P+I+ Y+ L+NG CK   + EA+ +   M+ + L PD   Y  +I   C++
Sbjct: 464 NRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+       LDEM   G +P+ +T+       N ++   CKT P ++A  ++  +    I
Sbjct: 524 GRIPHVQELLDEMCDSGQSPDVITY-------NILLDAFCKTQPFDKAISLFRQIV-EGI 575

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D  T  +++   CK   +  +   +  L++ GC P+  T++ ++ AL       +A  
Sbjct: 576 WPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAML 635

Query: 464 LL 465
           LL
Sbjct: 636 LL 637



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 198/385 (51%), Gaps = 11/385 (2%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H P  A+ +F +++  G  P+  ++  ++     ++    AF     + + G QP + + 
Sbjct: 70  HYP-TAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTF 128

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N +I   C N G +  A    + +  +G   D +TYGTLINGL + G+I  A  L +EME
Sbjct: 129 NTIINGFCIN-GMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEME 187

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
             +  P +V Y++LI+GLC+   V +A+ L  ++  +G+  +  TY+SL+DG C  G   
Sbjct: 188 KSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQ 247

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +  +LL  M+ +   P+  T++ L++ LCKEG++ EA  +L  M  +G KPD   Y  ++
Sbjct: 248 EVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
             +C      EA    + MV  G+ P+ L +       N ++ G CKT   + A  ++  
Sbjct: 308 EGYCSRENVHEARELFNRMVKRGLEPDVLNY-------NVLIDGYCKTKMVDEAMVLFKE 360

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           + N+++     +Y+SLI   C  G I    +++DE+      PD  T++ ++ AL    +
Sbjct: 361 LCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGR 420

Query: 458 MRQAAELLLLELMNKCVEAEVDIQN 482
           + +A  +L++ +M K V+  +   N
Sbjct: 421 ILEALGVLVM-MMKKGVKPNIVTYN 444



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 206/421 (48%), Gaps = 18/421 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNK--EKCDITEDIFLSICRGYGRVHRPLDAMR 106
           D+ TF+++I  L    +   A+ +L  ++K  EK DI    + ++  GY       +A  
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVT--YNALMEGYCSRENVHEARE 321

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +F++M + G EP   +Y  ++    +   +  A   ++ +    + P +AS N LI  LC
Sbjct: 322 LFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLC 381

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
            NSG +    K+  EM      PD  TY  LI+ LC+ G+I EA  +   M  K   P +
Sbjct: 382 -NSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNI 440

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VTY ++++G C   +V  A  +F  M   G+EP++  Y+ L++G CK     +A+ L + 
Sbjct: 441 VTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKE 500

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M  K   P+I +Y++L++GLC  G++    E+LD M   G  PD   Y  ++  FC    
Sbjct: 501 MRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQP 560

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ---VYLSMRNRSI 403
           + +A +   ++V  GI P+  T       ++ +V  LCK +  +  +    +L M   S 
Sbjct: 561 FDKAISLFRQIV-EGIWPDFYT-------NHAIVDNLCKGEKLKMAEDALKHLLMHGCSP 612

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           +V   TY+ LI   CK G   ++  ++ ++  +   PD  T+  ++  L  R +  +A +
Sbjct: 613 NVQ--TYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEK 670

Query: 464 L 464
           L
Sbjct: 671 L 671



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 166/316 (52%), Gaps = 8/316 (2%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRV 107
           ++++ +I  L ++ +    + LLD ++        +T +I +      GR+   L+A+ V
Sbjct: 371 ASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRI---LEALGV 427

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
              M + G +P   +Y  ++      N + +A   +  M + G++P + + NVLI   CK
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
               +D A  +F+EM ++   PD  +Y +LI+GLC LG+I   +EL  EM     SP V+
Sbjct: 488 TE-MVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVI 546

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY  L++  C+++  ++A+ LF ++  +G+ P+ +T  +++D LCKG     A + L+ +
Sbjct: 547 TYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHL 605

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           +     PN+ TY+ L+N LCK+G   EA+ +L +M+     PDA  +  II       + 
Sbjct: 606 LMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNET 665

Query: 348 QEAANFLDEMVLGGIT 363
            +A    +EM+  G+ 
Sbjct: 666 DKAEKLREEMIARGLV 681



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 152/318 (47%), Gaps = 15/318 (4%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +D A   F  M      P +  +  L+  + R+G    A  LF ++++K  SP++ T+T
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFT 94

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN          A  L   +   G +PN+ T++++++G C  G   +A++  Q ++++
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
            +  +  TY TL+NGL K G+++ A+ +L  M+   ++P+  +Y  +I   C  G   +A
Sbjct: 155 GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDA 214

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
                ++   GI  + +T+       N+++ G C         Q+   M   ++  D  T
Sbjct: 215 LGLCSQIGERGILLDAVTY-------NSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYT 267

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           ++ LI   CK+G I ++  ++  +   G  PD  T++A+M     R  + +A EL     
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELF---- 323

Query: 470 MNKCVE--AEVDIQNQDV 485
            N+ V+   E D+ N +V
Sbjct: 324 -NRMVKRGLEPDVLNYNV 340



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 133/267 (49%), Gaps = 8/267 (2%)

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           CR   + +A   F  M      P    +  L+  + +      A+ LF +++SKG+ P++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            T++ L++       ++ A  LL  ++   ++PN+VT++T++NG C  G + +A++    
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           +  QG   D   YG +I+     G+ + A + L EM    + PN + +S        ++ 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYS-------ALID 203

Query: 382 GLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLCK    + A  +   +  R I +D++TY+SLI   C  G   +  +++ ++V +   P
Sbjct: 204 GLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDP 263

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLLL 467
           D+ T++ ++ AL    ++ +A  +L +
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAM 290



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 2/246 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ M+      N    A+D+ +R+ K   +     +  +  GY +     +A
Sbjct: 435 GVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEA 494

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+     P   SY +++  L    ++         M + G  P V + N+L+ A
Sbjct: 495 IVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDA 554

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK +   D A  +FR++   G  PD YT   +++ LC+  K+  A++  K +    CSP
Sbjct: 555 FCK-TQPFDKAISLFRQIV-EGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSP 612

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TYT LIN LC+  S  EAM L  +M      P+  T+  ++  L +   + +A +L 
Sbjct: 613 NVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLR 672

Query: 285 QMMISK 290
           + MI++
Sbjct: 673 EEMIAR 678


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 241/491 (49%), Gaps = 48/491 (9%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +  +QV  ++R++ D   AL  F  A  ++   +RHD   +  M+  L      + A  +
Sbjct: 175 LKPSQVCAVLRSQDDERVALKFFYWADRQWR--YRHDPMVYYSMLEVLSKTKMCQGARRV 232

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L  + +     T + FL +   Y R  +  DA++V   M+  G EP      T + + V 
Sbjct: 233 LVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVR 292

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            N+L+ A RF   M+ +GI P V + N +I+  C +   ++ A ++  +MP++GC PD  
Sbjct: 293 ANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYC-DLHRVEEAIELLDDMPSKGCLPDKV 351

Query: 193 TYGTLINGLCRLGKIYEAKELFKEM----------------------------------- 217
           +Y T++  LC+  +I E ++L K+M                                   
Sbjct: 352 SYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKD 411

Query: 218 -ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSSLMDGLCKGG 275
            E K      V Y+++++ LC+   + EA  L  EM SKG   P+V TY+++++G C+ G
Sbjct: 412 AEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLG 471

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A +LLQ+M +  ++PN V+Y+ LLNGLC+ GK  EA E+++  + Q   P++  Y 
Sbjct: 472 EVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYS 531

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVY 395
            ++      GK  EA + + EMVL G  P  +         N ++Q LC+       + +
Sbjct: 532 VLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEI-------NLLLQSLCRDGRTHEARKF 584

Query: 396 LSM-RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           +    N+  +++ + ++++I  FC+  ++  +  ++D++ L     D  T++ ++ AL  
Sbjct: 585 MEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGK 644

Query: 455 RRKMRQAAELL 465
           + ++ +A EL+
Sbjct: 645 KGRIAEATELM 655



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 189/419 (45%), Gaps = 50/419 (11%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPLDAMRVFDKMKEF 114
           I   V AN+   A   L+R+  +   I  ++    C  RGY  +HR  +A+ + D M   
Sbjct: 287 IDVFVRANRLEKALRFLERM--QVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSK 344

Query: 115 GCEPTPKSYITVLAILVEENQL------------------------------------KL 138
           GC P   SY T++  L +E ++                                      
Sbjct: 345 GCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADE 404

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTL 197
           A  F +   E G +      + ++ ALCK  G M  A  +  EM ++G C PD  TY  +
Sbjct: 405 ALWFLKDAEEKGFRIDKVGYSAIVHALCK-EGRMSEAKDLINEMLSKGHCPPDVVTYTAV 463

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           +NG CRLG++ +AK+L + M T    P  V+YT+L+NGLC++    EA  +      +  
Sbjct: 464 VNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWW 523

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PN  TYS LM GL K G  S+A ++++ M+ K   P  V  + LL  LC++G+  EA +
Sbjct: 524 SPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARK 583

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
            ++    +G   +   +  +I  FC   +   A + LD+M L     +  T++       
Sbjct: 584 FMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYT------- 636

Query: 378 TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           T+V  L K      A ++   M ++ I    +TY ++I  +C+   +     I+++++L
Sbjct: 637 TLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKMIL 695



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 171/348 (49%), Gaps = 7/348 (2%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           ++T   ++ ++      ++AL     A  +   GFR D   +S ++  L    +   A+D
Sbjct: 386 QVTYNTLIHMLTKHDHADEALWFLKDAEEK---GFRIDKVGYSAIVHALCKEGRMSEAKD 442

Query: 72  LLDR-VNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           L++  ++K  C      + ++  G+ R+     A ++   M   G +P   SY  +L  L
Sbjct: 443 LINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGL 502

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
               +   A        E    P   + +VL+  L +  G +  A  + REM  +G  P 
Sbjct: 503 CRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGL-RKEGKLSEACDVVREMVLKGFFPG 561

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
                 L+  LCR G+ +EA++  +E   K C+  VV +T++I+G CQ+  ++ A+ + +
Sbjct: 562 PVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLD 621

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M       +VFTY++L+D L K G  ++A EL++ M+ K   P  VTY T+++  C+  
Sbjct: 622 DMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQME 681

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           K+ + V IL++M L+  +    +Y ++I   C +GK +EA   L +++
Sbjct: 682 KVDDLVAILEKMILR--QKCKTIYNQVIEKLCGLGKLEEADKLLGKVL 727



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 7/228 (3%)

Query: 9   WS-TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           WS   IT + ++  +R E  +++A    D        GF       +L++  L    +  
Sbjct: 523 WSPNSITYSVLMHGLRKEGKLSEAC---DVVREMVLKGFFPGPVEINLLLQSLCRDGRTH 579

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
            A   ++    + C I    F ++  G+ +      A+ V D M          +Y T++
Sbjct: 580 EARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLV 639

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
             L ++ ++  A    + M   GI P   +   +I   C+     D    + + +  + C
Sbjct: 640 DALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKMILRQKC 699

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
                 Y  +I  LC LGK+ EA +L  ++   A      T  +L+ G
Sbjct: 700 KT---IYNQVIEKLCGLGKLEEADKLLGKVLRTASRSDAKTCYALMEG 744


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 189/363 (52%), Gaps = 9/363 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F K+ + G  PT  ++ T++  +    +LK A  F+ H+  +G      S   LI 
Sbjct: 113 AFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLIN 172

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G   AA ++ +++  +    D   Y  +IN LC+   + +A +L+ EM TK  S
Sbjct: 173 GLCK-IGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRIS 231

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVT+ SLI G C    ++EA  LF EM  K + P+V+T+S L+D LCK G  ++A  +
Sbjct: 232 PDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNM 291

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+ +   P++VTYS+L++G C   ++ +A  +   M   G+ P A  Y  +I+    
Sbjct: 292 LAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGK 351

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           I    EA +   EM   GI P+ +T+       N+++ GLCK    + A+Q+   M N  
Sbjct: 352 IKMVDEALSLFKEMCCKGIAPDTVTY-------NSLIDGLCKLGRISYAWQLVDEMHNNG 404

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  D LTY+SLI   CK   I K+  +V ++   G  P   T++ ++  L    +++ A 
Sbjct: 405 IPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQ 464

Query: 463 ELL 465
           ++ 
Sbjct: 465 DVF 467



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 219/430 (50%), Gaps = 12/430 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T IT   ++  I     + +AL   D   A    GF  D  ++  +I+ L    + R A 
Sbjct: 128 TTITFNTLINGICLNGKLKEALHFHDHVIAL---GFHLDQVSYRTLINGLCKIGETRAAL 184

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            +L ++  +  +    ++  I     +     DA +++ +M      P   ++ +++   
Sbjct: 185 QMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGF 244

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
               QLK AF  +  M    I P V + ++L+ ALCK+ G +  A  +   M  +G  PD
Sbjct: 245 CVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKD-GNITRAKNMLAVMMKQGVIPD 303

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY +L++G C + ++ +AK +F  M     +P   +Y  +INGL + K V+EA+ LF+
Sbjct: 304 VVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFK 363

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EM  KG+ P+  TY+SL+DGLCK G  S A +L+  M +     +I+TY++L++ LCK  
Sbjct: 364 EMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNH 423

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            + +A+ ++ ++K QG++P    Y  +I   C  G+ + A +   ++++ G + N  T+ 
Sbjct: 424 HIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTY- 482

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N ++ GLCK       +V LS M N  I  D++TY ++I    +K +  K+ ++
Sbjct: 483 ------NIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKL 536

Query: 430 VDELVLDGCL 439
           + E+++ G L
Sbjct: 537 LREMIIRGLL 546



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 210/427 (49%), Gaps = 10/427 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+     TF+ +I+ +    + + A    D V      + +  + ++  G  ++     A
Sbjct: 124 GYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAA 183

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  K++          Y  ++  L ++  +  A++ Y  M    I P V + N LI  
Sbjct: 184 LQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILG 243

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  AF +F EM  +   PD YT+  L++ LC+ G I  AK +   M  +   P
Sbjct: 244 FCV-VGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIP 302

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY+SL++G C    V +A  +F  M   GV P+  +Y+ +++GL K     +A+ L 
Sbjct: 303 DVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLF 362

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P+ VTY++L++GLCK G++  A +++D M   G+  D   Y  +I   C  
Sbjct: 363 KEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKN 422

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSI 403
               +A   + ++   GI P+  T+       N ++ GLCK    +  Q V+  +  +  
Sbjct: 423 HHIDKAIALVKKIKDQGIQPSMYTY-------NILIDGLCKGGRLKNAQDVFQDLLIKGY 475

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           SV++ TY+ +I   CK+G  +++  ++ ++  +G +PD  T+  ++ AL+ R+   + AE
Sbjct: 476 SVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALF-RKDENEKAE 534

Query: 464 LLLLELM 470
            LL E++
Sbjct: 535 KLLREMI 541



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 168/326 (51%), Gaps = 10/326 (3%)

Query: 142 FYRHMREIGIQPCVASLNVLIKALCK-NSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           F+R +R +   P +   N ++ ++ K N+     A  +  ++  +G TP   T+  L+N 
Sbjct: 45  FHRMLR-MRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNC 103

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C LG++  A  +F ++      PT +T+ +LING+C +  ++EA+   + + + G   +
Sbjct: 104 YCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLD 163

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             +Y +L++GLCK G +  A+++L+ +  K    ++V Y+ ++N LCK+  + +A ++  
Sbjct: 164 QVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYS 223

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M  + + PD   +  +I  FC +G+ +EA     EMVL  I P+  T+S+       +V
Sbjct: 224 EMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSI-------LV 276

Query: 381 QGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LCK  +  RA  +   M  + +  D +TYSSL+  +C   +++K+  +   +   G  
Sbjct: 277 DALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVA 336

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           P   +++ ++  L   + + +A  L 
Sbjct: 337 PHAHSYNIMINGLGKIKMVDEALSLF 362


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/472 (27%), Positives = 229/472 (48%), Gaps = 45/472 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRP 101
           +G   D  T +++++ L + N  R  E L       +     DI  + ++ +G    HR 
Sbjct: 125 SGISPDCCTLNILLNCLCNVN--RVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRI 182

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE------IGIQPCV 155
             A  +F +M++ GC P   +Y T++  L     + +A + ++ M        I  +P V
Sbjct: 183 SKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVV 242

Query: 156 ASLNVLIKALCKN--------------------------SGTMDAAFKIFREMPNRGCTP 189
            S +++I ALCK+                          S   + A ++F EM N+G  P
Sbjct: 243 ISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQP 302

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +  T+  LI+ LC+ GK+ EAK+L + M  +   P ++TY SLI G C    +  A  LF
Sbjct: 303 NVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELF 362

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
             M SKG EP+V  Y+ L++G CK     +AM+L   M+    RP++ TY  LL GL + 
Sbjct: 363 VSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQG 422

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           GK+ +A ++   MK+ G+  D  +YG  ++  C  G   EA    +++            
Sbjct: 423 GKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKL-------KSYNI 475

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
            L I   N ++ GLCK      A++++  +    +  D +TY+ +I  FC+ G + K+  
Sbjct: 476 KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANI 535

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
           +  ++  +GC PD+ T++ ++   ++ +K+ +  ELL + ++ + V  +V+I
Sbjct: 536 LFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHM-MVQRDVSLDVNI 586



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 187/371 (50%), Gaps = 23/371 (6%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           + A + F  M      P   S+  +L+ L +       F  Y  MR  GI P   +LN+L
Sbjct: 78  IQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNIL 137

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LC N   +     +   +  RG  PD  TY TLI GLC   +I +A  LF  M+   
Sbjct: 138 LNCLC-NVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLG 196

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK------GVEPNVFTYSSLMDGLCKGG 275
           C+P  +TY +L+ GLC++ ++  A++L +EM +         +P V +YS ++D LCK  
Sbjct: 197 CTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDR 256

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A +L + M  +   P +++Y++L+         +EA  + + M  QG++P+   + 
Sbjct: 257 REDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFN 308

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQV 394
            +I   C  GK  EA + L+ M+  GI PN LT+       N++++G C   D N A ++
Sbjct: 309 VLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTY-------NSLIEGFCLVGDLNSAREL 361

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           ++SM ++    D + Y+ LI  +CK   + ++ ++ + ++  G  PD  T+ A++T L+ 
Sbjct: 362 FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ 421

Query: 455 RRKMRQAAELL 465
             K+  A +L 
Sbjct: 422 GGKVGDAKKLF 432



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 140/330 (42%), Gaps = 70/330 (21%)

Query: 202 CRLGKI--YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           C+ G I   +A + F  M     +P + ++T L++GL + K   +   L+ +MR  G+ P
Sbjct: 70  CKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +  T + L++ LC      + + ++  ++ + + P+IVTY+TL+ GLC E ++ +A  + 
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLF 189

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIG---------------------------------- 345
            RM+  G  P+A  YG ++   C  G                                  
Sbjct: 190 TRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIII 249

Query: 346 -------KYQEAANFLDEMVLGGITP-----NRLTWSLHIRIHNTVV-QGLCKTDPNRA- 391
                  +  EA +  +EM + G+TP       L W    R+ N +V QG+    PN   
Sbjct: 250 DALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGV---QPNVVT 306

Query: 392 FQVYLS-----------------MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           F V +                  M  R I  + LTY+SLI  FC  GD++ +  +   + 
Sbjct: 307 FNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMP 366

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             GC PD   ++ ++       K+ +A +L
Sbjct: 367 SKGCEPDVICYTVLINGYCKTSKVEEAMKL 396


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 227/456 (49%), Gaps = 16/456 (3%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIR    E  + +AL +FD    E   GF+ +  T+  +I+ L        A  LL  + 
Sbjct: 132 LIRGLCVEGKIGEALHLFDKMIDE---GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 188

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +  C     I+ SI     +  +  +A  +F +M   G  P   +Y +++  L    + K
Sbjct: 189 QGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWK 248

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                   M    I P V   + ++ ALCK  G +  A +I   M  RG  PD  TY TL
Sbjct: 249 HVTTLLNQMVNSKILPDVVIFSTVVDALCK-EGKVTEAHEIVDMMIQRGVEPDVVTYTTL 307

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++G C   ++ EA ++F  M  K  +P V++YT+LING C+   +++AM LFEEM  K  
Sbjct: 308 MDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 367

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P+  TY++LM GLC  G    A+ L   M+++   P++VTYS LL+ LCK   L+EA+ 
Sbjct: 368 IPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMA 427

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +L  ++   L PD  +Y  II   C  G+ + A +    +   G+ P+   W+ +I IH 
Sbjct: 428 LLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPS--VWTYNIMIH- 484

Query: 378 TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
               GLCK    N A ++++ M     S D  TY+++   F +  +  ++ ++++E++  
Sbjct: 485 ----GLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLAR 540

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           G   D  T + ++  L D   + Q++  L+L ++++
Sbjct: 541 GFSADVSTTTLLVEMLSD-DGLDQSSCFLMLSVLSE 575



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 219/435 (50%), Gaps = 10/435 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ +I  L    +   A  L D++  E        + ++  G  +V     A
Sbjct: 121 GHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAA 180

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M++  C+P    Y +++  L ++ Q+  AF  +  M   GI P + +   L+ A
Sbjct: 181 IRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHA 240

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N         +  +M N    PD   + T+++ LC+ GK+ EA E+   M  +   P
Sbjct: 241 LC-NLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEP 299

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+L++G C    ++EA+++F+ M  KG  P+V +Y++L++G CK     +AM L 
Sbjct: 300 DVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLF 359

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P+  TY+TL++GLC  G+LQ+A+ +   M  +G  PD   Y  ++   C  
Sbjct: 360 EEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKN 419

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
              +EA   L  +    + P+       I+++N ++ G+C+  +   A  ++ ++ ++ +
Sbjct: 420 CHLEEAMALLKAIEASNLNPD-------IQVYNIIIDGMCRAGELEAARDLFSNLSSKGL 472

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
                TY+ +I   CK+G ++++ ++  E+  + C PD  T++ +        +  +A +
Sbjct: 473 HPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQ 532

Query: 464 LLLLELMNKCVEAEV 478
            LL E++ +   A+V
Sbjct: 533 -LLEEMLARGFSADV 546



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 185/364 (50%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F+++      P+   +  +L  + +             M   G+ P V +LN+LI
Sbjct: 39  DALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILI 98

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            + C +   +  AF +  ++   G  PD  T+ TLI GLC  GKI EA  LF +M  +  
Sbjct: 99  NSFC-HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGF 157

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY +LINGLC+  +   A+RL   M     +P+V  Y+S++D LCK    ++A  
Sbjct: 158 QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFN 217

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M+ +   P+I TY++L++ LC   + +    +L++M    + PD  ++  ++   C
Sbjct: 218 LFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALC 277

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
             GK  EA   +D M+  G+ P+ +T++       T++ G C +++ + A +V+  M  +
Sbjct: 278 KEGKVTEAHEIVDMMIQRGVEPDVVTYT-------TLMDGHCLQSEMDEAVKVFDMMVRK 330

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             + D ++Y++LI  +CK   I K+  + +E+     +PD  T++ +M  L    +++ A
Sbjct: 331 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDA 390

Query: 462 AELL 465
             L 
Sbjct: 391 IALF 394



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 142/296 (47%), Gaps = 8/296 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T+D A   F  + +    P    +  L+  + ++        L  +M++    P V T  
Sbjct: 36  TLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN 95

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN  C    V  A  +  ++   G +P+  T+++L+ GLC  G   +A+ L   MI +
Sbjct: 96  ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 155

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN+VTY TL+NGLCK G    A+ +L  M+    +PD  +Y  II   C   +  EA
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 215

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
            N   +MV  GI+P+  T++       ++V  LC     +     L+ M N  I  D + 
Sbjct: 216 FNLFSQMVGQGISPDIFTYT-------SLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 268

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +S+++   CK+G + ++  IVD ++  G  PD  T++ +M     + +M +A ++ 
Sbjct: 269 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF 324



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 135/269 (50%), Gaps = 4/269 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           + ++++A+ +FD    +   GF  D  +++ +I+     ++   A  L + + +++    
Sbjct: 314 QSEMDEAVKVFDMMVRK---GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPD 370

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G   V R  DA+ +F +M   G  P   +Y  +L  L +   L+ A    +
Sbjct: 371 TKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLK 430

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            +    + P +   N++I  +C+ +G ++AA  +F  + ++G  P  +TY  +I+GLC+ 
Sbjct: 431 AIEASNLNPDIQVYNIIIDGMCR-AGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKR 489

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G + EA +LF EM+   CSP   TY ++  G  Q+     A++L EEM ++G   +V T 
Sbjct: 490 GLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTT 549

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           + L++ L   G    +  L+  ++S+  R
Sbjct: 550 TLLVEMLSDDGLDQSSCFLMLSVLSEDDR 578


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 175/321 (54%), Gaps = 7/321 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+  +  G+ R     DA+RV D+M   GC P   +Y T+L  L +E +L  A      M
Sbjct: 18  IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 77

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           RE G+ P + +   LI   C   G +D A ++F  M N+   PD  TY TLI+G+CR G 
Sbjct: 78  RERGVPPDLCTFTTLIHGYCI-EGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 136

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A +L+ +M ++   P  VTY+ LI+  C+   VE+A    +EM +KG+ PN+ TY+S
Sbjct: 137 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 196

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ G C+ G  S+  + LQ M+  +  P+++TY+TL++G  KE K+ +A ++L+ M+ + 
Sbjct: 197 IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK 256

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           ++PD   Y  +I+ F   G  QEA    ++M   GI P+R T+   I  H T        
Sbjct: 257 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTA------G 310

Query: 387 DPNRAFQVYLSMRNRSISVDS 407
           +   AFQ++  M  R  + D 
Sbjct: 311 NSKEAFQLHDEMLQRGFAPDD 331



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 179/324 (55%), Gaps = 9/324 (2%)

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
           + R MR  G+ P      ++I   C+ +G M  A ++  EM   GC PD  TY TL+NGL
Sbjct: 3   YLREMRCFGLVPDGVIYTMVIGGFCR-AGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 61

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+  ++ +A+ L  EM  +   P + T+T+LI+G C    +++A++LF+ M ++ + P++
Sbjct: 62  CKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDI 121

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY++L+DG+C+ G   +A +L   M S+   PN VTYS L++  C++G++++A   LD 
Sbjct: 122 VTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDE 181

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  +G+ P+   Y  II  +C  G   +   FL +M++  ++P+ +T+       NT++ 
Sbjct: 182 MINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY-------NTLIH 234

Query: 382 GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           G  K D  + AF++   M    +  D +TY+ LI  F   G++ ++  I +++   G  P
Sbjct: 235 GYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEP 294

Query: 441 DEGTWSAVMTALWDRRKMRQAAEL 464
           D  T+ +++         ++A +L
Sbjct: 295 DRYTYMSMINGHVTAGNSKEAFQL 318



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 8/253 (3%)

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            +EM      P  V YT +I G C++  + +A+R+ +EM   G  P+V TY++L++GLCK
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                 A  LL  M  +   P++ T++TL++G C EGKL +A+++ D M  Q L+PD   
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAF 392
           Y  +I   C  G   +A +  D+M    I PN +T+S+ I  H       C K     AF
Sbjct: 124 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSH-------CEKGQVEDAF 176

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
                M N+ I  + +TY+S+I  +C+ G++ K  + + +++++   PD  T++ ++   
Sbjct: 177 GFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGY 236

Query: 453 WDRRKMRQAAELL 465
               KM  A +LL
Sbjct: 237 IKEDKMHDAFKLL 249



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           M    EMR  G+ P+   Y+ ++ G C+ G  S A+ +   M+     P++VTY+TLLNG
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCKE +L +A  +L+ M+ +G+ PD   +  +I  +C  GK  +A    D M+   + P+
Sbjct: 61  LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 120

Query: 366 RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            +T+       NT++ G+C+  D ++A  ++  M +R I  + +TYS LI   C+KG + 
Sbjct: 121 IVTY-------NTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 173

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
            +   +DE++  G LP+  T+++++        + +  + L   ++NK
Sbjct: 174 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 221


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 234/473 (49%), Gaps = 47/473 (9%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGY---GRVHRPLD 103
           +  T++++++ L  A     A ++L  +   K  +  D+  + ++  G+   G + R  +
Sbjct: 8   NERTYNVVVNGLCKARLTSKAYEVLKEMRDGK-SVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            +R  + +   G  P   +Y +V+  L  + ++  A    R M+  G++P   + + LI 
Sbjct: 67  ILR--EMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 124

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK--- 220
             C N+  +D A K+++E+    C  D+ +   LI GLCR  +I EA ELF+EME +   
Sbjct: 125 GWC-NARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDG 183

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
           A  P VVTYT+LI+G C+S ++E+AM++   M  +   PNV TYSSL+ GLCK G   QA
Sbjct: 184 AWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA 243

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           ++L + M SK   PN+VTY+TL++GLC   K+  A  ++D M       D   Y  ++  
Sbjct: 244 LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDG 303

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------------------------- 374
           +C +G+ +EA     EM      P+R+T++  +R                          
Sbjct: 304 YCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDP 363

Query: 375 ---IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
               ++ VV G  +      A +    M  R+++ +++TYSSLI   CK G ++ +  ++
Sbjct: 364 DVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVL 423

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
             +      PD  T++ V+  L    +  +A   LL E++NK VE  V   N 
Sbjct: 424 KNVD----KPDVVTYTIVIEGLCGTDRTEEAL-TLLEEMVNKRVEPSVGTFNS 471



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 224/428 (52%), Gaps = 17/428 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++ ++  L    +   A +++  +  +  +  +  F ++  G+    +  +
Sbjct: 75  DGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDE 134

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM--REIGI-QPCVASLNV 160
           A++++ ++    C     S   ++  L  E ++  A+  ++ M  RE G  +P V +   
Sbjct: 135 ALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTA 194

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   CK SG ++ A K+   M  R C P+  TY +L++GLC+ G + +A +LF+ M +K
Sbjct: 195 LIDGFCK-SGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSK 253

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C P VVTYT+LI+GLC +  V+ A  L +EM +     +  +Y++L+DG C+ G   +A
Sbjct: 254 GCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEA 313

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-GLKPDAGLYGKIIS 339
            +L + M +K   P+ +TY+ L+ G C   +L+EA  +L+ MK   G+ PD   Y  +++
Sbjct: 314 KQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVA 373

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
            +    ++ EAA F+ EM+   + PN +T+S       +++ GLCK    N A +V  ++
Sbjct: 374 GYSRAKRFVEAAEFIQEMIARNVAPNAVTYS-------SLIDGLCKAGRVNHAMEVLKNV 426

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
                  D +TY+ +I   C      ++  +++E+V     P  GT+++V+ AL     M
Sbjct: 427 DKP----DVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDM 482

Query: 459 RQAAELLL 466
            +A +LL+
Sbjct: 483 DEAWKLLV 490



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 222/461 (48%), Gaps = 22/461 (4%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           +SA +  L R E+ + +A  +F          ++ D  T++ +I     +     A  +L
Sbjct: 154 SSALITGLCR-ERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKML 212

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
             +   KC      + S+  G  +      A+ +F +M   GC P   +Y T++  L   
Sbjct: 213 GVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAA 272

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           +++  A      M          S N L+   C+  G ++ A ++F+EM  + C PD  T
Sbjct: 273 HKVDAARLLMDEMTATCCPADTVSYNALLDGYCR-LGRIEEAKQLFKEMAAKSCLPDRIT 331

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           Y  L+ G C   ++ EA+ L + M+T A   P VVTY+ ++ G  ++K   EA    +EM
Sbjct: 332 YTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEM 391

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            ++ V PN  TYSSL+DGLCK G  + AME+L+ +     +P++VTY+ ++ GLC   + 
Sbjct: 392 IARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNV----DKPDVVTYTIVIEGLCGTDRT 447

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           +EA+ +L+ M  + ++P  G +  +I   C +G   EA   L  M   G+ P  +T++  
Sbjct: 448 EEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYT-- 505

Query: 373 IRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSL-------TYSSLITCFCKKGDIH 424
                T+++G  +T     A++++  MR ++    S         +S+LI   CK  +I 
Sbjct: 506 -----TLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREID 560

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           K+  +V+EL    C P E    A++  L    +  +A +L+
Sbjct: 561 KAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLI 601



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 189/369 (51%), Gaps = 38/369 (10%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN-RGCTPDSYTYGTLINGLCRL 204
           MRE  + P   + NV++  LCK   T   A+++ +EM + +   PD  TY T+ING C+ 
Sbjct: 1   MREF-VAPNERTYNVVVNGLCKARLT-SKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQ 58

Query: 205 GKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
           G++  A E+ +EM T+   +P VVTYTS+++GLC+   ++ A  +  EM+ KGVEP+ FT
Sbjct: 59  GEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFT 118

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +S+L+ G C      +A++L + +++   R + V+ S L+ GLC+E ++ EA E+   M+
Sbjct: 119 FSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEME 178

Query: 324 LQ---GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS--LH------ 372
           ++     KPD   Y  +I  FC  G  ++A   L  M      PN +T+S  LH      
Sbjct: 179 MREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAG 238

Query: 373 --------------------IRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYS 411
                               +  + T++ GLC      A ++ +  M       D+++Y+
Sbjct: 239 DLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYN 298

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           +L+  +C+ G I ++ ++  E+    CLPD  T++ ++    +  ++ +A    LLE M 
Sbjct: 299 ALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEAR--FLLENMK 356

Query: 472 KCVEAEVDI 480
                + D+
Sbjct: 357 TAAGIDPDV 365



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 207/423 (48%), Gaps = 45/423 (10%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + +L  +    D+++AL +F   T++   G   +  T++ +I  L +A++   A  L
Sbjct: 225 VTYSSLLHGLCKAGDLDQALDLFRRMTSK---GCVPNVVTYTTLIHGLCAAHKVDAARLL 281

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           +D +    C      + ++  GY R+ R  +A ++F +M    C P   +Y  ++     
Sbjct: 282 MDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCN 341

Query: 133 ENQLKLAFRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
            ++L+ A     +M+   GI P V + ++++    +    ++AA +  +EM  R   P++
Sbjct: 342 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAA-EFIQEMIARNVAPNA 400

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY +LI+GLC+ G++  A E+ K ++     P VVTYT +I GLC +   EEA+ L EE
Sbjct: 401 VTYSSLIDGLCKAGRVNHAMEVLKNVD----KPDVVTYTIVIEGLCGTDRTEEALTLLEE 456

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M +K VEP+V T++S++  LC+ G   +A +LL  M +    P +VTY+TLL G  + G+
Sbjct: 457 MVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGR 516

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           ++ A E+ + M+ +  K  +                  AAN + E               
Sbjct: 517 MEIAYELFEVMRRKAKKSSS------------------AANLVPEQAF------------ 546

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                + +++GLCK  + ++A  V   +R+R          +++    + G   ++ +++
Sbjct: 547 -----SALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLI 601

Query: 431 DEL 433
           + +
Sbjct: 602 NSI 604



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 139/288 (48%), Gaps = 15/288 (5%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D  T++ ++    +A++   A  LL+ + K    I  D+  +  +  GY R  R ++A  
Sbjct: 328 DRITYTCLVRGFCNASRLEEARFLLENM-KTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 386

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
              +M      P   +Y +++  L +  ++  A    +++     +P V +  ++I+ LC
Sbjct: 387 FIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVD----KPDVVTYTIVIEGLC 442

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
               T + A  +  EM N+   P   T+ ++I  LCRLG + EA +L   M      P +
Sbjct: 443 GTDRT-EEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGM 501

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT-------YSSLMDGLCKGGCSSQ 279
           VTYT+L+ G  ++  +E A  LFE MR K  + +          +S+L+ GLCK     +
Sbjct: 502 VTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDK 561

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           AM +++ + S+   P       +++GL + G+ +EA ++++ +   GL
Sbjct: 562 AMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 238/504 (47%), Gaps = 68/504 (13%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHR 100
           A G R D   ++ ++   V+A     A  ++ R+ + +     D F    +  G  R  +
Sbjct: 150 AAGARPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGK 209

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             DA++VFD+M + G  P   +Y T++   V+   L+  FR    M   G +P + + NV
Sbjct: 210 GSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNV 269

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL----------------------- 197
           L+  LC+ +G MD    +  EM +    PD +TY  L                       
Sbjct: 270 LLSGLCR-AGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKK 328

Query: 198 ------------INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
                       +NGLC+ GK+ +A+++ + +      PT V Y +LING CQ + +  A
Sbjct: 329 GVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGA 388

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             +FE+M+S+ + P+  TY++L++GLCK    ++A +L+  M      P++ T++TL++ 
Sbjct: 389 FCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDA 448

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
               G+L++   +L  M+ +G+K D   +G ++  FC  GK  EA   LD+M+   + PN
Sbjct: 449 YGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPN 508

Query: 366 RLTW----------------------------SLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
              +                            S  I  +N +++GLC++   + A ++  
Sbjct: 509 AQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIY 568

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
           ++RN+ +  D ++Y+++I+  C KGD  K+  ++ E+   G  P   T+  +++AL    
Sbjct: 569 TLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAG 628

Query: 457 KMRQAAELLLLELMNKCVEAEVDI 480
           ++    E L  ++++K VE    I
Sbjct: 629 RVHD-MECLYQQMLHKNVEPSSSI 651



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 196/398 (49%), Gaps = 24/398 (6%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           D+ L++ R  GR               E    P   SY  V+A L    +   A + +  
Sbjct: 174 DVALAMVRRMGR--------------SEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDE 219

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M ++G+ P   + N +I    K  G ++A F++  +M + G  P+  TY  L++GLCR G
Sbjct: 220 MVDMGVVPNWITYNTMIDGHVKG-GDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAG 278

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ E + L  EM + +  P   TY+ L +GL ++      + LF E   KGV    +T S
Sbjct: 279 RMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCS 338

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            L++GLCK G  ++A ++L+M++     P  V Y+TL+NG C+   L+ A  I ++MK +
Sbjct: 339 ILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSR 398

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            ++PD   Y  +I+  C +    +A + + EM   G+ P+  T++  I  + T  Q    
Sbjct: 399 HIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ---- 454

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
               + F V   M+ + I  D +++ S++  FCK G I ++  I+D+++     P+   +
Sbjct: 455 --LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 512

Query: 446 SAVMTALWDRRKMRQAAELLLLELM-NKCVEAEVDIQN 482
           ++++ A  +     QA   LL+E M N  V A +   N
Sbjct: 513 NSIIDAYIESGDTEQA--FLLVEKMKNSGVSASIVTYN 548



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 159/322 (49%), Gaps = 1/322 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T S++++ L    +   AE +L+ +       T  I+ ++  GY +V     A  +F++M
Sbjct: 336 TCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM 395

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K     P   +Y  ++  L +   +  A      M + G+ P V + N LI A    +G 
Sbjct: 396 KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAY-GTAGQ 454

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++  F +  +M  +G   D  ++G+++   C+ GKI EA  +  +M  K  +P    Y S
Sbjct: 455 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+   +S   E+A  L E+M++ GV  ++ TY+ L+ GLC+     +A EL+  + ++ 
Sbjct: 515 IIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 574

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RP++V+Y+T+++  C +G   +A+E+L  M   G++P    Y  ++S     G+  +  
Sbjct: 575 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDME 634

Query: 352 NFLDEMVLGGITPNRLTWSLHI 373
               +M+   + P+   + + +
Sbjct: 635 CLYQQMLHKNVEPSSSIYGIMV 656



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 138/263 (52%), Gaps = 1/263 (0%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M++ G +P+ +++ T++       QL+  F     M++ GI+  V S   ++KA CKN 
Sbjct: 429 EMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN- 487

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A  I  +M  +   P++  Y ++I+     G   +A  L ++M+    S ++VTY
Sbjct: 488 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 547

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             L+ GLC+S  ++EA  L   +R++G+ P+V +Y++++   C  G + +A+ELLQ M  
Sbjct: 548 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              RP + TY TL++ L   G++ +   +  +M  + ++P + +YG ++  +       +
Sbjct: 608 YGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSK 667

Query: 350 AANFLDEMVLGGITPNRLTWSLH 372
            A+   EM   GI  +    S H
Sbjct: 668 VASLKKEMSEKGIAFDDTKRSNH 690



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 127/283 (44%), Gaps = 4/283 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +D+  A  IF+   + +    R D+ T++ +I+ L        AEDL+  + K   D + 
Sbjct: 383 RDLRGAFCIFEQMKSRH---IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSV 439

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           + F ++   YG   +      V   M++ G +    S+ +V+    +  ++  A      
Sbjct: 440 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 499

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M    + P     N +I A  + SG  + AF +  +M N G +    TY  L+ GLCR  
Sbjct: 500 MIYKDVAPNAQVYNSIIDAYIE-SGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSS 558

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +I EA+EL   +  +   P VV+Y ++I+  C     ++A+ L +EM   G+ P + TY 
Sbjct: 559 QIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYH 618

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           +L+  L   G       L Q M+ K   P+   Y  +++   +
Sbjct: 619 TLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVR 661


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 215/428 (50%), Gaps = 34/428 (7%)

Query: 53   FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDK 110
            F+ +++ +   N+F     L  ++  E   I+ D+  F  +   + R  R   A+ +  K
Sbjct: 618  FTRVLTAIAKMNKFDIVIYLFHKM--ENLGISHDLYSFTILIHCFCRCSRFSLALALLGK 675

Query: 111  MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
            M + G +P+  +  ++L    + N+ + A      M E+G++P V   N +I  LCKN  
Sbjct: 676  MMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNR- 734

Query: 171  TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             ++ A +IF  M  +G   D+ TY TLI+GLC  G+  +A  L ++M  +   P V+ +T
Sbjct: 735  DLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFT 794

Query: 231  SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            +LI+   +  ++ EA  L++EM  + V PN+ TY+SL++G C  G    A  +  +M+SK
Sbjct: 795  ALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSK 854

Query: 291  RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
               P++VTY+TL+ G CK  ++++ +++   M  QGL  DA  Y  +I  +C  GK   A
Sbjct: 855  GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVA 914

Query: 351  ANFLDEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQG 382
                + MV  G+ P+ +T+++                             I  +N ++QG
Sbjct: 915  QKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQG 974

Query: 383  LCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
            +C+ D    A+ ++ S+  + + +D++ Y ++I+  C+ G   ++ ++   +  DG +P 
Sbjct: 975  MCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPS 1034

Query: 442  EGTWSAVM 449
            E  +   +
Sbjct: 1035 ERIYDETL 1042



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 199/387 (51%), Gaps = 12/387 (3%)

Query: 83  ITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           I+ D+  F  +   + R  R   A+ +  KM + G +P+  ++ ++L      N++  AF
Sbjct: 96  ISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAF 155

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLIN 199
                M + G +P V   N LI  LCKN G ++ A ++  EM  +G    D  TY TL+ 
Sbjct: 156 SLVASMVKSGYEPNVVVYNTLIDCLCKN-GDVNIALELLNEMEKKGRLAADLVTYNTLLT 214

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           GLC  G+  +A  + ++M  +  +P V T+T+LI+   +  +++EA  L+++M    + P
Sbjct: 215 GLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGP 274

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           N  TY+SL++GLC  G    A +   +M SK   PN+VTY+TL+NG CK  ++++ +++ 
Sbjct: 275 NTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLF 334

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
            RM  +GL  D   Y  +I  +C +GK + A +    MV  G+TP+ +T       H  +
Sbjct: 335 QRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIIT-------HCIL 387

Query: 380 VQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           + GLC   +   A   +  MR+    +  + Y+ +I   CK   + ++  +   L ++G 
Sbjct: 388 LHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGV 447

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
            PD  T++ ++  L      R+A EL 
Sbjct: 448 KPDARTYTIMILGLCKNGPRREADELF 474



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 197/384 (51%), Gaps = 12/384 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F +M +    P+   +  VL  + + N+  +    +  M  +GI   + S  +LI
Sbjct: 598 DAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILI 657

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S     A  +  +M   G  P   T G+L+NG C+  +  EA  L   M     
Sbjct: 658 HCFCRCS-RFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGL 716

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y ++INGLC+++ +  A+ +F  M  KG+  +  TY++L+ GLC  G  + A  
Sbjct: 717 EPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAAR 776

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+ ++  PN++ ++ L++   KEG L EA  +   M  + + P+   Y  +I+ FC
Sbjct: 777 LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFC 836

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G+  +A +  D MV  G  P+ +T+       NT++ G CK+       +++  M ++
Sbjct: 837 IQGRLGDAKHMFDLMVSKGCFPDVVTY-------NTLITGFCKSKRVEDGMKLFCEMTHQ 889

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D+ TY++LI  +C+ G ++ + ++ + +V  G  PD  T++ ++  L +  K+ +A
Sbjct: 890 GLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKA 949

Query: 462 AELLLLELMNKCVEAEVDIQNQDV 485
             L+++E + K  + +VDI   ++
Sbjct: 950 --LVMVEDLQK-NQMDVDIITYNI 970



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 169/355 (47%), Gaps = 16/355 (4%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M +    P+   +  +L  +    + +    F + M   GI   + S  +LI
Sbjct: 48  DALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILI 107

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  I  +M   G  P   T+G+L++G C   +I++A  L   M     
Sbjct: 108 HCFCRCS-RLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGY 166

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSSLMDGLCKGGCSSQAM 281
            P VV Y +LI+ LC++  V  A+ L  EM  KG +  ++ TY++L+ GLC  G   QA 
Sbjct: 167 EPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAA 226

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            +L+ M  +R  P++ T++ L++   K+G L EA E+  +M    + P+   Y  +I+  
Sbjct: 227 RILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGL 286

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT----DPNRAFQVYLS 397
           C  G+   A    D M   G  PN +T+       NT++ G CK+    D  + FQ    
Sbjct: 287 CMHGRLYHAKKTFDLMASKGCFPNVVTY-------NTLINGFCKSRRVEDGMKLFQ---R 336

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           M    +  D+ TY++LI  +C+ G +  +  I   +V  G  PD  T   ++  L
Sbjct: 337 MYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGL 391



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 150/294 (51%), Gaps = 6/294 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D AF +F EM      P    +  ++  + ++ K      LF +ME    S  + ++T 
Sbjct: 596 FDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTI 655

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+  C+      A+ L  +M   G +P++ T  SL++G C+G    +A+ L+  M    
Sbjct: 656 LIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELG 715

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN+V Y+T++NGLCK   L  A+EI   M+ +G+  DA  Y  +IS  C+ G++ +AA
Sbjct: 716 LEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAA 775

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
             L +MV   I PN + ++  I   +T V+   + +   A  +Y  M  RS+  + LTY+
Sbjct: 776 RLLRDMVKRKIDPNVIFFTALI---DTFVK---EGNLLEAKNLYKEMIRRSVHPNILTYN 829

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           SLI  FC +G +  +  + D +V  GC PD  T++ ++T     +++    +L 
Sbjct: 830 SLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLF 883



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 129/259 (49%), Gaps = 1/259 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A R+   M +    P   ++  ++   V++  L  A   Y+ M +  I P   + N LI 
Sbjct: 225 AARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLIN 284

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC + G +  A K F  M ++GC P+  TY TLING C+  ++ +  +LF+ M  +   
Sbjct: 285 GLCMH-GRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLV 343

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
               TY +LI+G CQ   +  A  +F  M S GV P++ T+  L+ GLC  G    AM  
Sbjct: 344 GDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVK 403

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M S      IV Y+ +++GLCK  K++EA E+  R+ ++G+KPDA  Y  +I   C 
Sbjct: 404 FNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCK 463

Query: 344 IGKYQEAANFLDEMVLGGI 362
            G  +EA      M   GI
Sbjct: 464 NGPRREADELFRRMKEDGI 482



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 138/279 (49%), Gaps = 1/279 (0%)

Query: 100  RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
            R  DA R+   M +   +P    +  ++   V+E  L  A   Y+ M    + P + + N
Sbjct: 770  RWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYN 829

Query: 160  VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
             LI   C   G +  A  +F  M ++GC PD  TY TLI G C+  ++ +  +LF EM  
Sbjct: 830  SLINGFCI-QGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTH 888

Query: 220  KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
            +       TY +LI+G CQ+  +  A ++F  M   GV P++ TY+ L+D LC  G   +
Sbjct: 889  QGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEK 948

Query: 280  AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
            A+ +++ +   +   +I+TY+ ++ G+C+  K++EA  +   +  +G+K DA  Y  +IS
Sbjct: 949  ALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMIS 1008

Query: 340  CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              C  G  +EA      M   G  P+   +   +R H T
Sbjct: 1009 GLCRNGLRREADKLCTRMKEDGFMPSERIYDETLRDHYT 1047



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 142/292 (48%), Gaps = 7/292 (2%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A  +F EM      P    +  L+  +  L +        ++ME    S  + ++T LI+
Sbjct: 49  ALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIH 108

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
             C+   +  A+ +  +M   G +P++ T+ SL+ G C       A  L+  M+   + P
Sbjct: 109 CFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEP 168

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG-LKPDAGLYGKIISCFCDIGKYQEAANF 353
           N+V Y+TL++ LCK G +  A+E+L+ M+ +G L  D   Y  +++  C  G++++AA  
Sbjct: 169 NVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARI 228

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
           L +M    I P+  T++    I   V QG    + + A ++Y  M   SI  +++TY+SL
Sbjct: 229 LRDMTKRRINPDVFTFT--ALIDAFVKQG----NLDEAQELYKQMLQSSIGPNTVTYNSL 282

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I   C  G ++ + +  D +   GC P+  T++ ++      R++    +L 
Sbjct: 283 INGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLF 334



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 129/254 (50%), Gaps = 7/254 (2%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A +LF EM      P+VV +T L+  +   +  E  +   ++M   G+  ++++++ L+
Sbjct: 48  DALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILI 107

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
              C+    S A+ +L  M+   + P+IVT+ +LL+G C   ++ +A  ++  M   G +
Sbjct: 108 HCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYE 167

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           P+  +Y  +I C C  G    A   L+EM   G    RL   L    +NT++ GLC +  
Sbjct: 168 PNVVVYNTLIDCLCKNGDVNIALELLNEMEKKG----RLAADL--VTYNTLLTGLCYSGE 221

Query: 389 NR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            R A ++   M  R I+ D  T+++LI  F K+G++ ++  +  +++     P+  T+++
Sbjct: 222 WRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNS 281

Query: 448 VMTALWDRRKMRQA 461
           ++  L    ++  A
Sbjct: 282 LINGLCMHGRLYHA 295



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 102/213 (47%), Gaps = 1/213 (0%)

Query: 52   TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            T++ +I+      +   A+ + D +  + C      + ++  G+ +  R  D M++F +M
Sbjct: 827  TYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEM 886

Query: 112  KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
               G      +Y T++    +  +L +A + +  M + G+ P + + N+L+  LC N+G 
Sbjct: 887  THQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLC-NNGK 945

Query: 172  MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            ++ A  +  ++       D  TY  +I G+CR  K+ EA  LF+ +  K      + Y +
Sbjct: 946  IEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYIT 1005

Query: 232  LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            +I+GLC++    EA +L   M+  G  P+   Y
Sbjct: 1006 MISGLCRNGLRREADKLCTRMKEDGFMPSERIY 1038



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 1/154 (0%)

Query: 90   SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            ++  GY +  +   A +VF++M + G  P   +Y  +L  L    +++ A      +++ 
Sbjct: 900  TLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKN 959

Query: 150  GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
             +   + + N++I+ +C+N   +  A+ +FR +  +G   D+  Y T+I+GLCR G   E
Sbjct: 960  QMDVDIITYNIIIQGMCRND-KVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRRE 1018

Query: 210  AKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
            A +L   M+     P+   Y   +     S S E
Sbjct: 1019 ADKLCTRMKEDGFMPSERIYDETLRDHYTSLSAE 1052


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 207/436 (47%), Gaps = 30/436 (6%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
            + D  T+  ++  L    +F    +++D +   +   +E    S+  G  +  +  +A+
Sbjct: 293 LKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEAL 352

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            +  ++ +FG  P    Y  ++  L +  +   A   +  M +IG++P   + ++LI   
Sbjct: 353 NLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMF 412

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C+  G +D A     EM + G     Y Y +LING C+ G I  A+    EM  K   PT
Sbjct: 413 CRR-GKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPT 471

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VVTYTSL+ G C    + +A+RL+ EM  KG+ P+++T+++L+ GL + G    A++L  
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFN 531

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M     +PN VTY+ ++ G C+EG + +A E L  M  +G+ PD   Y  +I   C  G
Sbjct: 532 EMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTG 591

Query: 346 KYQEAANFLDEMVLGGITPNRLTWS----------------------------LHIRIHN 377
           +  EA  F+D +  G    N + ++                            L +  + 
Sbjct: 592 QASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYG 651

Query: 378 TVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++ G  K  D    F +   M +R +  D + Y+S+I    K GD  ++  I D ++ +
Sbjct: 652 VLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINE 711

Query: 437 GCLPDEGTWSAVMTAL 452
           GC+P+E T++AV+  L
Sbjct: 712 GCVPNEVTYTAVINGL 727



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 204/396 (51%), Gaps = 7/396 (1%)

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           AE  +  +  +K + T   + S+  GY    +   A+R++ +M   G  P+  ++ T+L+
Sbjct: 456 AEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLS 515

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            L     ++ A + +  M E  ++P   + NV+I+  C+  G M  AF+  +EM  +G  
Sbjct: 516 GLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCE-EGDMSKAFEFLKEMTEKGIV 574

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD+Y+Y  LI+GLC  G+  EAK     +    C    + YT L++G C+   +EEA+ +
Sbjct: 575 PDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSV 634

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            +EM  +GV+ ++  Y  L+DG  K         LL+ M  +  +P+ V Y+++++   K
Sbjct: 635 CQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSK 694

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G  +EA  I D M  +G  P+   Y  +I+  C  G   EA     +M      PN++T
Sbjct: 695 TGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVT 754

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +   + I   + +G  + D  +A +++ ++  + +  ++ TY+ LI  FC++G I +++ 
Sbjct: 755 YGCFLDI---LTKG--EVDMQKAVELHNAIL-KGLLANTATYNMLIRGFCRQGRIEEASE 808

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           ++  ++ DG  PD  T++ ++  L  R  +++A EL
Sbjct: 809 LITRMIGDGVSPDCITYTTMINELCRRNDVKKAIEL 844



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 215/467 (46%), Gaps = 81/467 (17%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLL-----------DRVN-----KEKCDITEDI- 87
           GF H  ++F ++I  LV AN F PA  LL           D  N      EKC ++    
Sbjct: 99  GFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFNVLFSCYEKCKLSSSSS 158

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  + + Y R  R LD + VF  M            IT +++L                 
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMM------------ITKVSLL----------------- 189

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
                P V +L+ L+  L K       A ++F +M + G  PD Y Y  +I  LC L  +
Sbjct: 190 -----PEVRTLSALLHGLVKFR-HFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDL 243

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             AKE+   ME   C   +V Y  LI+GLC+ + V EA+ + +++  K ++P+V TY +L
Sbjct: 244 SRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTL 303

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + GLCK       +E++  M+  R  P+    S+L+ GL K GK++EA+ ++ R+   G+
Sbjct: 304 VYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGV 363

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI------------ 375
            P+  +Y  +I   C   K+ EA    D M   G+ PN +T+S+ I +            
Sbjct: 364 SPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALS 423

Query: 376 ----------------HNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFC 418
                           +N+++ G CK     A + +++ M N+ +    +TY+SL+  +C
Sbjct: 424 FLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC 483

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            KG I+K+ R+  E+   G  P   T++ +++ L+    +R A +L 
Sbjct: 484 SKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 183/367 (49%), Gaps = 9/367 (2%)

Query: 6   MFKWSTK---ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           M +W+ K   +T   +++    E D++KA       T +   G   D  ++  +I  L  
Sbjct: 533 MAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEK---GIVPDTYSYRPLIHGLCL 589

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
             Q   A+  +D ++K  C++ E  +  +  G+ R  +  +A+ V  +M + G +     
Sbjct: 590 TGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVC 649

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y  ++   ++    KL F   + M + G++P       +I A  K +G    AF I+  M
Sbjct: 650 YGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSK-TGDFKEAFGIWDLM 708

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK-S 241
            N GC P+  TY  +INGLC+ G + EA+ L  +M+  +  P  VTY   ++ L + +  
Sbjct: 709 INEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVD 768

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           +++A+ L   +  KG+  N  TY+ L+ G C+ G   +A EL+  MI     P+ +TY+T
Sbjct: 769 MQKAVELHNAIL-KGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTT 827

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           ++N LC+   +++A+E+ + M  +G++PD   Y  +I   C  G+  +A    +EM+  G
Sbjct: 828 MINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQG 887

Query: 362 ITPNRLT 368
           + PN  T
Sbjct: 888 LIPNNKT 894



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 173/409 (42%), Gaps = 46/409 (11%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T   ++    ++  +NKAL ++   T +   G      TF+ ++S L  A   R A 
Sbjct: 471 TVVTYTSLMGGYCSKGKINKALRLYHEMTGK---GIAPSIYTFTTLLSGLFRAGLIRDAV 527

Query: 71  DLLDRVNKEKCDITEDIFLSICRGY-------------------GRV-----HRPL---- 102
            L + + +         +  +  GY                   G V     +RPL    
Sbjct: 528 KLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGL 587

Query: 103 -------DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
                  +A    D + +  CE     Y  +L     E +L+ A    + M + G+   +
Sbjct: 588 CLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDL 647

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
               VLI    K+       F + +EM +RG  PD   Y ++I+   + G   EA  ++ 
Sbjct: 648 VCYGVLIDGSLKHKDR-KLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWD 706

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            M  + C P  VTYT++INGLC++  V EA  L  +M+     PN  TY   +D L KG 
Sbjct: 707 LMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGE 766

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              Q    L   I K    N  TY+ L+ G C++G+++EA E++ RM   G+ PD   Y 
Sbjct: 767 VDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYT 826

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            +I+  C     ++A    + M   GI P+R+ +       NT++ G C
Sbjct: 827 TMINELCRRNDVKKAIELWNSMTEKGIRPDRVAY-------NTLIHGCC 868



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 1/199 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  ++D M   GC P   +Y  V+  L +   +  A      M+ +   P   +    +
Sbjct: 700 EAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFL 759

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K    M  A ++   +  +G   ++ TY  LI G CR G+I EA EL   M     
Sbjct: 760 DILTKGEVDMQKAVELHNAIL-KGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGV 818

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP  +TYT++IN LC+   V++A+ L+  M  KG+ P+   Y++L+ G C  G   +A E
Sbjct: 819 SPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATE 878

Query: 283 LLQMMISKRHRPNIVTYST 301
           L   M+ +   PN  T  T
Sbjct: 879 LRNEMLRQGLIPNNKTSRT 897



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 36/235 (15%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           +  G + D+  ++ MI        F+ A  + D +  E C   E  + ++  G  +    
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFV 733

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVE-ENQLKLAFRFYRHMREIGIQPCVASLNV 160
            +A  +  KM+     P   +Y   L IL + E  ++ A   +  + + G+    A+ N+
Sbjct: 734 NEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILK-GLLANTATYNM 792

Query: 161 LIKALCKNSGTMDA----------------------------------AFKIFREMPNRG 186
           LI+  C+     +A                                  A +++  M  +G
Sbjct: 793 LIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKG 852

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
             PD   Y TLI+G C  G++ +A EL  EM  +   P   T  +  +    SKS
Sbjct: 853 IRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRTTTSNDTSSKS 907


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 188/356 (52%), Gaps = 9/356 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F S+  G+   +R  DA+ +FD++   G  P   +Y T++  L +   L  A   +  M 
Sbjct: 155 FTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMG 214

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + GI+P V + N L+  LC+     DAA+ + R+M  RG  P+  T+  LI+   ++GKI
Sbjct: 215 DNGIRPNVVTYNSLVSGLCEIGRWSDAAW-LLRDMMKRGIQPNVITFTALIDAFVKVGKI 273

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EAKEL+K M   +  P V TYT+LINGLC    ++EA ++F  M S G  PN  TY++L
Sbjct: 274 MEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTL 333

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G CK        ++   M  K    N +TY+ L+ G C  G+   A E+ ++M  +  
Sbjct: 334 IHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRA 393

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            PD   Y  ++   C  G  ++A      M    +  N +T+++       ++QG+CK  
Sbjct: 394 PPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTI-------IIQGMCKVG 446

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
               AF ++ S+ ++ +  + +TY+++I+ FC++G IH++  +  ++  DG LP+E
Sbjct: 447 KVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNE 502



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 195/380 (51%), Gaps = 14/380 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +F +M      P+   +  +L+++ +  +  +    +  M+ +GI P + + N+++
Sbjct: 65  EALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVM 124

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             +C++S    A+     +M   G  PD  T+ +L++G C   +I +A  LF ++     
Sbjct: 125 NCVCRSSQPCRAS-CFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGF 183

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTYT+LI+ LC+++ +  A+ +F +M   G+ PNV TY+SL+ GLC+ G  S A  
Sbjct: 184 RPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAW 243

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+ +  +PN++T++ L++   K GK+ EA E+   M    + PD   Y  +I+  C
Sbjct: 244 LLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLC 303

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G+  EA      M   G  PN +T++       T++ G CK+       +++  M  +
Sbjct: 304 TYGRLDEARQMFYLMESNGYYPNEVTYT-------TLIHGFCKSKRVEDGTKIFYEMSQK 356

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  +++TY+ LI  +C  G    +  + +++      PD  T++ ++  L     + +A
Sbjct: 357 GLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKA 416

Query: 462 AELLLLELMNKCVEAEVDIQ 481
             L++ + M K    E+DI 
Sbjct: 417 --LMIFKYMRK---REMDIN 431



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 165/338 (48%), Gaps = 4/338 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +  AL +FD        GFR +  T++ +I  L        A ++ +++           
Sbjct: 168 IEDALALFDQIVGM---GFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVT 224

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+  G   + R  DA  +   M + G +P   ++  ++   V+  ++  A   Y+ M 
Sbjct: 225 YNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMI 284

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           ++ + P V +   LI  LC   G +D A ++F  M + G  P+  TY TLI+G C+  ++
Sbjct: 285 QMSVYPDVFTYTALINGLC-TYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRV 343

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +  ++F EM  K      +TYT LI G C     + A  +F +M S+   P++ TY+ L
Sbjct: 344 EDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVL 403

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGLC  G   +A+ + + M  +    NIVTY+ ++ G+CK GK+++A ++   +  +G+
Sbjct: 404 LDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGM 463

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           KP+   Y  +IS FC  G   EA     +M   G  PN
Sbjct: 464 KPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPN 501



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 128/269 (47%), Gaps = 44/269 (16%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L NGL  L +  EA +LF  M      P++V +T L++ + + K  +  + LFE+M+  G
Sbjct: 54  LRNGLHNL-QFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILG 112

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           + P ++T + +M+ +C+   SSQ                           C  GK+    
Sbjct: 113 ISPVLYTCNIVMNCVCR---SSQPCR----------------------ASCFLGKM---- 143

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
                MKL G +PD   +  ++  FC   + ++A    D++V  G  PN +T++      
Sbjct: 144 -----MKL-GFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYT------ 191

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            T++  LCK    N A +++  M +  I  + +TY+SL++  C+ G    +A ++ +++ 
Sbjct: 192 -TLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMK 250

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            G  P+  T++A++ A     K+ +A EL
Sbjct: 251 RGIQPNVITFTALIDAFVKVGKIMEAKEL 279


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 202/388 (52%), Gaps = 26/388 (6%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A R +++M E G      +       L    + + A+   R M   G  P  ++ + +I 
Sbjct: 71  AERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIG 130

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC N+  ++ AF++F+EM   G TPD YTY TL++  C++G I +A+  F EM+   C+
Sbjct: 131 YLC-NASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCA 189

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTYT+LI+   +++ +  A  +FE M S G  PN+ TY++L+DG CK G + +A ++
Sbjct: 190 PNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQI 249

Query: 284 -----------------LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
                             +++ S+   PN+VTY  L++GLCK  K++EA ++L+ M L+G
Sbjct: 250 YARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEG 309

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
            +P+  +Y  +I  FC +GK  EA     +M+  G +PN  T+S       +++  L K 
Sbjct: 310 CEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYS-------SLIDKLFKD 362

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              + A +V   M   S + + + Y+ ++   CK G   ++ R++  +   GC P+  T+
Sbjct: 363 KRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTY 422

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKC 473
           +A++       ++ +  ELL L     C
Sbjct: 423 TAMIDGFGKAGRVDRCLELLQLMTSKGC 450



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 202/413 (48%), Gaps = 32/413 (7%)

Query: 79  EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK- 137
           E C  +  IF S+   Y R      A ++  KM   G +P    Y  ++  +     L  
Sbjct: 5   EGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPS 64

Query: 138 -----LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
                LA R Y  M E+G+     ++    + LC   G  + A+ + REM ++G  PDS 
Sbjct: 65  MEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLC-CIGKFEKAYNVIREMMSKGFIPDSS 123

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY  +I  LC   K+ +A +LF+EM+    +P V TYT+L++  C+   +E+A   F+EM
Sbjct: 124 TYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEM 183

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           +  G  PNV TY++L+    K    S+A E+ +MM+S    PNIVTY+ L++G CK G+ 
Sbjct: 184 QQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGET 243

Query: 313 QEAVEILDRMKLQGL-----------------KPDAGLYGKIISCFCDIGKYQEAANFLD 355
           ++A +I  RMK   +                 +P+   YG ++   C   K +EA + L+
Sbjct: 244 EKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLE 303

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLI 414
            M L G  PN++       I++ ++ G CK    + A +V+  M     S +  TYSSLI
Sbjct: 304 TMSLEGCEPNQI-------IYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLI 356

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
               K   +  + +++ +++ + C P+   ++ ++  L    K  +A  L+L+
Sbjct: 357 DKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLM 409



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 199/438 (45%), Gaps = 31/438 (7%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++V+  +     V KA  +F        NG   D  T++ ++ +         A +  
Sbjct: 124 TYSKVIGYLCNASKVEKAFQLFQEMKR---NGITPDVYTYTTLLDRFCKVGLIEQARNWF 180

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           D + ++ C      + ++   Y +  +   A  +F+ M   GC P   +Y  ++    + 
Sbjct: 181 DEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKA 240

Query: 134 NQLKLAFRFYRHMREIGI-----------------QPCVASLNVLIKALCKNSGTMDAAF 176
            + + A + Y  M+   +                 +P V +   L+  LCK     +A  
Sbjct: 241 GETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEAR- 299

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
            +   M   GC P+   Y  LI+G C++GK+ EA+E+F +M    CSP V TY+SLI+ L
Sbjct: 300 DLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKL 359

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
            + K ++ A+++  +M      PNV  Y+ ++DGLCK G + +A  L+ MM  K   PN+
Sbjct: 360 FKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNV 419

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           VTY+ +++G  K G++   +E+L  M  +G  P+   Y  +I+  C  G   +A   L+E
Sbjct: 420 VTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEE 479

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL-TYSSLIT 415
           M        +  W  HI ++  V++G   +    A    L+  +   SV  L  Y  LI 
Sbjct: 480 M-------KQTYWPKHIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVPILPVYKLLID 530

Query: 416 CFCKKGDIHKSARIVDEL 433
            F K G +  +  + +EL
Sbjct: 531 NFIKAGRLEMALELHEEL 548



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 171/350 (48%), Gaps = 22/350 (6%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHR 100
           + GF  D+ST+S +I  L +A++   A  L   + +    IT D+  + ++   + +V  
Sbjct: 115 SKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRN--GITPDVYTYTTLLDRFCKVGL 172

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A   FD+M++ GC P   +Y  ++   ++  +L  A   +  M   G  P + +   
Sbjct: 173 IEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTA 232

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGC-----------------TPDSYTYGTLINGLCR 203
           LI   CK +G  + A +I+  M N                     P+  TYG L++GLC+
Sbjct: 233 LIDGHCK-AGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCK 291

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
             K+ EA++L + M  + C P  + Y +LI+G C+   ++EA  +F +M   G  PNV+T
Sbjct: 292 AHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYT 351

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           YSSL+D L K      A+++L  M+     PN+V Y+ +++GLCK GK  EA  ++  M+
Sbjct: 352 YSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMME 411

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            +G  P+   Y  +I  F   G+       L  M   G  PN +T+ + I
Sbjct: 412 EKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLI 461



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 154/339 (45%), Gaps = 35/339 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  ++  L  A++ + A DLL+ ++ E C+  + I+ ++  G+ +V +  +A  VF KM
Sbjct: 281 TYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKM 340

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P   +Y +++  L ++ +L LA +    M E    P V     ++  LCK  G 
Sbjct: 341 LGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCK-VGK 399

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D A+++   M  +GC P+  TY  +I+G  + G++    EL + M +K C+P  +TY  
Sbjct: 400 TDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRV 459

Query: 232 LINGLCQSKSVEEAMRLFEEMRS---------------------------------KGVE 258
           LIN  C +  +++A +L EEM+                                   G  
Sbjct: 460 LINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSV 519

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P +  Y  L+D   K G    A+EL + + S        TY +L+  L    K+ +A ++
Sbjct: 520 PILPVYKLLIDNFIKAGRLEMALELHEEL-SSFSAAYQNTYVSLIESLTLACKVDKAFKL 578

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
              M  +G  P+  +   +I     +GK++EA    D +
Sbjct: 579 YSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSDSI 617



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 152/344 (44%), Gaps = 52/344 (15%)

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M   GC P    + +L++  CR G  + A +L K+M      P  V Y  LI G+C ++ 
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 242 VEE------AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           +        A R + EM   GV  N     +    LC  G   +A  +++ M+SK   P+
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
             TYS ++  LC   K+++A ++   MK  G+ PD   Y  ++  FC +G  ++A N+ D
Sbjct: 122 SSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFD 181

Query: 356 EMVLGGITPNRLTWS--LH--------------------------IRIHNTVVQGLCKT- 386
           EM   G  PN +T++  +H                          I  +  ++ G CK  
Sbjct: 182 EMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAG 241

Query: 387 DPNRAFQVYLSMRNRSIS----------VDS-------LTYSSLITCFCKKGDIHKSARI 429
           +  +A Q+Y  M+N  +           VDS       +TY +L+   CK   + ++  +
Sbjct: 242 ETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDL 301

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++ + L+GC P++  + A++       K+ +A E+    L + C
Sbjct: 302 LETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGC 345



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M ++G  P+   ++SL+   C+ G    A +LL+ M+   ++P  V Y+ L+ G+C    
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 312 L--QEAVEILDR----MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           L   E + + +R    M   G+  +         C C IGK+++A N + EM+  G  P+
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 366 RLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
             T+S        V+  LC      +AFQ++  M+   I+ D  TY++L+  FCK G I 
Sbjct: 122 SSTYS-------KVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIE 174

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           ++    DE+  DGC P+  T++A++ A    RK+ +A E+  + L N CV
Sbjct: 175 QARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCV 224


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 197/391 (50%), Gaps = 17/391 (4%)

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+F   ++  GY R +  LDA R    +      P   +Y  ++ +L +  ++  A    
Sbjct: 109 DVFAYNTLVAGYCR-YGHLDAARRL--IGSMPVAPDAYTYTPLIRVLCDRGRVADALSLL 165

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M   G QP V +  VL++A+CKNSG  + A  +  EM  +GCTP+  TY  +ING+CR
Sbjct: 166 DDMLRRGCQPNVVTYTVLLEAMCKNSG-FEQAMAVLDEMRAKGCTPNIVTYNVIINGMCR 224

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G++ +A++L   + +  C P  V+YT+L+ GLC SK  ++   LF EM  K   PN  T
Sbjct: 225 EGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVT 284

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +  L+   C+GG   +A+++LQ M       N    + ++N +CK+G++ +A + L+ M 
Sbjct: 285 FDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMG 344

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G  PD   Y  ++   C   ++ +A   L EMV     PN +T+       NT +  L
Sbjct: 345 SYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTF-------NTFICIL 397

Query: 384 C-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C K    +A  +   M+    +V  +TY++L+  FC +G I  +  +   +    C P+ 
Sbjct: 398 CQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNT 454

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            T++ ++T L +  ++  AAEL+   L   C
Sbjct: 455 ITYTTLLTGLCNAERLDAAAELVAEMLHRDC 485



 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 228/489 (46%), Gaps = 50/489 (10%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +L+ +       +A+ + D   A+   G   +  T++++I+ +    +   A DL
Sbjct: 178 VTYTVLLEAMCKNSGFEQAMAVLDEMRAK---GCTPNIVTYNVIINGMCREGRVDDARDL 234

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L+R+    C      + ++ +G     R  D   +F +M E  C P   ++  ++     
Sbjct: 235 LNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCR 294

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              ++ A +  + M E          N++I ++CK  G +D AFK    M + GC PD+ 
Sbjct: 295 GGMVERAIQVLQQMTEHECATNTTLCNIVINSICK-QGRVDDAFKFLNNMGSYGCNPDTI 353

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +Y T++ GLCR  +  +AKEL KEM    C P  VT+ + I  LCQ   +E+A+ L E+M
Sbjct: 354 SYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQM 413

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           +  G    V TY++L++G C  G    A+EL + M  K   PN +TY+TLL GLC   +L
Sbjct: 414 QEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERL 470

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
             A E++  M  +   P+   +  +++ FC  G   EA   +++M+  G TPN +T+   
Sbjct: 471 DAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITY--- 527

Query: 373 IRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCF-------------- 417
               NT+  G+ K      A ++   + ++ +S D +T+SS+I                 
Sbjct: 528 ----NTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFH 583

Query: 418 ---------------------CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
                                CK+ +I  +   +  +V +GC+P+E T+  ++  L    
Sbjct: 584 LAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREG 643

Query: 457 KMRQAAELL 465
            +++A +LL
Sbjct: 644 LLKEAQDLL 652



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 182/350 (52%), Gaps = 12/350 (3%)

Query: 50  NSTF-SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           N+T  +++I+ +    +   A   L+ +    C+     + ++ +G  R  R  DA  + 
Sbjct: 316 NTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELL 375

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M    C P   ++ T + IL ++  ++ A      M+E G    V + N L+   C  
Sbjct: 376 KEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCV- 434

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D+A ++FR MP   C P++ TY TL+ GLC   ++  A EL  EM  + C P VVT
Sbjct: 435 QGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVT 491

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L+N  CQ   ++EA+ L E+M   G  PN+ TY++L DG+ K   S  A+ELL  ++
Sbjct: 492 FNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLV 551

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           SK   P+++T+S+++  L KE +++EA+++    +  G++P A +Y KI+   C   +  
Sbjct: 552 SKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEID 611

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSM 398
            A +FL  MV  G  PN  T+ +       +++GL +    +  Q  LSM
Sbjct: 612 NAIDFLAYMVSNGCMPNESTYII-------LIEGLAREGLLKEAQDLLSM 654



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 163/330 (49%), Gaps = 12/330 (3%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P V     LI+ LC+   T DAA ++ R     G   D + Y TL+ G CR G +  
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAA-RVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDA 128

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A+ L   M     +P   TYT LI  LC    V +A+ L ++M  +G +PNV TY+ L++
Sbjct: 129 ARRLIGSMPV---APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLE 185

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            +CK     QAM +L  M +K   PNIVTY+ ++NG+C+EG++ +A ++L+R+   G +P
Sbjct: 186 AMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQP 245

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-P 388
           D   Y  ++   C   ++ +      EM+     PN +T+ + IR         C+    
Sbjct: 246 DTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRF-------FCRGGMV 298

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
            RA QV   M     + ++   + +I   CK+G +  + + ++ +   GC PD  +++ V
Sbjct: 299 ERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTV 358

Query: 449 MTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +  L    +   A ELL   + N C   EV
Sbjct: 359 LKGLCRAERWNDAKELLKEMVRNNCPPNEV 388



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 162/326 (49%), Gaps = 10/326 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G   D  +++ ++  L  A ++  A++LL  + +  C   ++T + F+ I    G + + 
Sbjct: 347 GCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQ- 405

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A+ + ++M+E GC     +Y  ++     +  +  A   +R M     +P   +   L
Sbjct: 406 --AIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTL 460

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LC N+  +DAA ++  EM +R C P+  T+  L+N  C+ G + EA EL ++M    
Sbjct: 461 LTGLC-NAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHG 519

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C+P ++TY +L +G+ +  S E+A+ L   + SKGV P+V T+SS++  L K     +A+
Sbjct: 520 CTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAI 579

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++  +      RP  + Y+ +L GLCK  ++  A++ L  M   G  P+   Y  +I   
Sbjct: 580 QMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGL 639

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRL 367
              G  +EA + L  +   G+    L
Sbjct: 640 AREGLLKEAQDLLSMLCSRGVVSKNL 665


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 213/428 (49%), Gaps = 17/428 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHR 100
           A G + +  +++ ++  L    ++  AE+L+  +       T D+  + ++  GY +  +
Sbjct: 38  ARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGK 97

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             ++  +  ++   G  P    Y  V+A L +  +L  A      M   G  P + + N 
Sbjct: 98  VEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNT 157

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   C+    ++ A  + + M   G   D  TY TL++GLC+ G++ EA++L + M+  
Sbjct: 158 LISGCCREK-NLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKAS 216

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C+P VV Y+S + GLC+S  V  A ++ E+MR    +PNV TY++++DGLCK G    A
Sbjct: 217 GCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTA 276

Query: 281 MELLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +E+++ M S      N+V YST+++GLCK G+ QEA  +++ M   G +PD   Y  +++
Sbjct: 277 LEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVN 336

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
             C  GK +EA   + EM + G  PN +T+        ++V GLC       A ++   M
Sbjct: 337 GLCKAGKIEEAVEAVREMAMEGCKPNAVTYC-------SLVHGLCSCGRLAEAERMVEEM 389

Query: 399 RNRSISVDSL-----TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            +     D       TY++LI   CK G I  + +    +   GC PD  ++S ++  L 
Sbjct: 390 SSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLA 449

Query: 454 DRRKMRQA 461
              +  QA
Sbjct: 450 RSGRALQA 457



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 198/393 (50%), Gaps = 45/393 (11%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M   GC P   ++  ++    ++ +     R    M   GIQP V S N L++ LCK   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 171 TMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEAKELFKE-----------M 217
             +A  ++ R+M +RG   TPD  TY TL++G C+ GK+ E++EL KE           M
Sbjct: 61  WHEAE-ELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALM 119

Query: 218 ETK------------------------ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
            TK                         C PT++T+ +LI+G C+ K++E A  L + M 
Sbjct: 120 YTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMA 179

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           + GV+ +V TY++LMDGLCK G   +A +LL+ M +    P++V YS+ + GLCK GK+ 
Sbjct: 180 ASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVL 239

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            A ++L++M+     P+   Y  I+   C  GK   A   +++M       +     L++
Sbjct: 240 NAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMA------SSDGCGLNV 293

Query: 374 RIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
             ++TVV GLCK    + A  V  +M       D +TYSSL+   CK G I ++   V E
Sbjct: 294 VGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVRE 353

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + ++GC P+  T+ +++  L    ++ +A  ++
Sbjct: 354 MAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMV 386


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 202/405 (49%), Gaps = 11/405 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  +++ +I       +   A +L   +++    +    + ++ +G  +  R  + 
Sbjct: 76  GFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHM----YAALVKGLCKAGRGEEG 131

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  +MKE G  P+ ++Y  V+     E + K A    + M E G+ PCV +   +I A
Sbjct: 132 LLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA 191

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M  A ++   M  RGC P+ +TY  L+ G C  GK+++A  L  +M     +P
Sbjct: 192 YCK-EGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNP 250

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY  LI G C    +E A RL   M   G+  + +TY++L++ LCK G + QA  L 
Sbjct: 251 DAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF 310

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             + ++  +PN VT+++L+NGLCK GK+  A + L++M   G  PD   Y   I   C +
Sbjct: 311 DSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKM 370

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
              QE  +F+ EM+   + P+ + ++  I IH      L + +     + +  M +   +
Sbjct: 371 KGSQEGLSFIGEMLQKDVKPSTVNYT--IVIHKL----LKERNYGLVARTWGEMVSSGCN 424

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++ +  +C +G ++++  ++ E+  +G   D   ++ +M
Sbjct: 425 PDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 469



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 207/452 (45%), Gaps = 47/452 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+R     ++ ++       + + AE++L  + ++          ++   Y +  R  DA
Sbjct: 142 GWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDA 201

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +RV + MK  GC+P   +Y  ++     E ++  A      MR  G+ P   + N+LI+ 
Sbjct: 202 LRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRG 261

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C + G +++AF++ R M   G   D YTY  LIN LC+ G+  +A  LF  +ET+   P
Sbjct: 262 QCID-GHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKP 320

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM--- 281
             VT+ SLINGLC+S  V+ A +  E+M S G  P+ +TYSS ++ LCK   S + +   
Sbjct: 321 NAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFI 380

Query: 282 -ELLQM-------------------------------MISKRHRPNIVTYSTLLNGLCKE 309
            E+LQ                                M+S    P++VTY+T +   C E
Sbjct: 381 GEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIE 440

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+L EA  +L  M   G+  D   Y  ++     IG+   A + L +M      PN+ T+
Sbjct: 441 GRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTY 500

Query: 370 SLHIR--IHNTVVQGLCKTDP---------NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            + +R  +   +V+ +    P            F ++  M+      +S TYSS++  F 
Sbjct: 501 FILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFS 560

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           + G   ++  +V  +  D    +E  ++A++T
Sbjct: 561 EDGRTEEATSLVSLMKEDSISLNEDIYTALVT 592



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 182/350 (52%), Gaps = 13/350 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+R    M   G  P   ++ +++      NQ+ +A   +  M   G    V S   LI+
Sbjct: 30  ALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIE 89

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+ +G +D A ++F EM      PD + Y  L+ GLC+ G+  E   + + M+     
Sbjct: 90  GFCE-TGRIDEAVELFGEMDQ----PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWR 144

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P+   Y ++++  C  +  +EA  + +EM  KG+ P V T +++++  CK G  S A+ +
Sbjct: 145 PSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 204

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L++M  +  +PN+ TY+ L+ G C EGK+ +A+ +L++M++ G+ PDA  Y  +I   C 
Sbjct: 205 LELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCI 264

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
            G  + A   L  M   G+  ++ T       +N ++  LCK    ++A  ++ S+  R 
Sbjct: 265 DGHIESAFRLLRLMEGDGLIADQYT-------YNALINALCKDGRTDQACSLFDSLETRG 317

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           I  +++T++SLI   CK G +  + + ++++V  GC PD  T+S+ +  L
Sbjct: 318 IKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHL 367



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 182/431 (42%), Gaps = 26/431 (6%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            +G   D  T++ +I+ L    +   A  L D +           F S+  G  +  +  
Sbjct: 280 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVD 339

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A +  +KM   GC P   +Y + +  L +    +    F   M +  ++P   +  ++I
Sbjct: 340 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 399

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K       A + + EM + GC PD  TY T +   C  G++ EA+ +  EM     
Sbjct: 400 HKLLKERNYGLVA-RTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV 458

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM-------------- 268
           +   + Y +L++G       + A+ + ++M S    PN FTY  L+              
Sbjct: 459 TVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLP 518

Query: 269 ---DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
               G+ K    +    L  +M      PN  TYS++L G  ++G+ +EA  ++  MK  
Sbjct: 519 LTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKED 578

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-C 384
            +  +  +Y  +++CFC   +Y +A   +  M+  G  P       H+  +  ++ GL C
Sbjct: 579 SISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIP-------HLMSYQHLLSGLIC 631

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +   ++A +++++ R +  S D + +  +I    KKG    S  ++  L    C P   T
Sbjct: 632 EGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQT 691

Query: 445 WSAVMTALWDR 455
           ++ +   L DR
Sbjct: 692 YAMLTEELPDR 702



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 116/239 (48%), Gaps = 12/239 (5%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY ++I  LC+   +  A+R    M   G  P+ +T++SL+ G C+      A +L   M
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
             +    ++V+Y+ L+ G C+ G++ EAVE+   M     +PD  +Y  ++   C  G+ 
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKAGRG 128

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVD 406
           +E    L  M         L W    R +  VV   C +     A ++   M  + ++  
Sbjct: 129 EEGLLMLRRM-------KELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPC 181

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +T +++I  +CK+G +  + R+++ + L GC P+  T++A++    +  K+ +A  LL
Sbjct: 182 VVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALL 240


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 215/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  TF+++I  L    +   A    D+V  +   + +  + ++  G  RV     A
Sbjct: 123 GYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAA 182

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  ++      P    Y T++  + ++  +  AF  Y  M    I P V + + LI  
Sbjct: 183 VQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISG 242

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  A  +F  M +    P+ YT+  LI+G C+ GK+ EAK +   M  K    
Sbjct: 243 FCV-VGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKL 301

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY SL++G C  K V +A  LF  M  +GV P+V++YS +++G CK     +AM+L 
Sbjct: 302 DVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLF 361

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K+  PN+VTY++L++GLCK G+   A+E++D M  +G   +   Y  I+   C  
Sbjct: 362 EEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKN 421

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
               +A   L ++   GI P+  T+++       ++ GLCK    + A +V+  +  +  
Sbjct: 422 NHVDKAIVLLTKIKEKGIQPDIFTYTV-------LINGLCKVGRLDDAQKVFEDLLVKGY 474

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           S +  TY+SLI  FC KG   +   ++ ++  +GC+P+  T+  ++ +L+++ +  +A +
Sbjct: 475 SPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEK 534

Query: 464 LL 465
           LL
Sbjct: 535 LL 536



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 191/363 (52%), Gaps = 9/363 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  +M+  G +P   +   ++    +   +K +F  +  + + G  P   +  +LIK
Sbjct: 77  ALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIK 136

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC   G +  A     ++  +G   D  +YGTLINGLCR+G+   A +L + ++ K   
Sbjct: 137 GLCL-KGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVR 195

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VV Y+++I+ +C+ K V +A  L+ EM SK + P+V TYSSL+ G C  G    A++L
Sbjct: 196 PNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDL 255

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MIS    PN+ T+S L++G CKEGK++EA  +L  M  + +K D   Y  ++  +C 
Sbjct: 256 FNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCL 315

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
           + +  +A +  + M   G+TP+   WS  I I+     G CK    + A +++  M  + 
Sbjct: 316 VKQVNKAKSLFNVMAQRGVTPD--VWSYSIMIN-----GFCKIKMVDEAMKLFEEMHCKQ 368

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  + +TY+SL+   CK G    +  +VDE+   G   +  T+++++ A+     + +A 
Sbjct: 369 IFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAI 428

Query: 463 ELL 465
            LL
Sbjct: 429 VLL 431



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 183/382 (47%), Gaps = 37/382 (9%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +V+KAL   D   A+   GF+ D  ++  +I+ L    + + A  LL RV+ +       
Sbjct: 143 EVHKALYFHDKVVAQ---GFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVV 199

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ +I     +     DA  ++ +M      P   +Y ++++      +LK A   +  M
Sbjct: 200 MYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRM 259

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDA-------------------------------- 174
               I P V + ++LI   CK     +A                                
Sbjct: 260 ISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQV 319

Query: 175 --AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
             A  +F  M  RG TPD ++Y  +ING C++  + EA +LF+EM  K   P VVTY SL
Sbjct: 320 NKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSL 379

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           ++GLC+S     A+ L +EM  +G   N+ TY+S++D +CK     +A+ LL  +  K  
Sbjct: 380 VDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGI 439

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P+I TY+ L+NGLCK G+L +A ++ + + ++G  P+   Y  +I+ FC+ G + E   
Sbjct: 440 QPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLA 499

Query: 353 FLDEMVLGGITPNRLTWSLHIR 374
            L +M   G  PN +T+ + I 
Sbjct: 500 MLSKMKDNGCIPNAITYEILIH 521



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 224/458 (48%), Gaps = 36/458 (7%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRV--NKEKCD-ITEDIFLSICRGYGRVHRPLDAMRVFD 109
           F  ++  L+ A Q++ A  L  ++  N  K D IT ++ ++     G +     +  VF 
Sbjct: 61  FGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKF---SFSVFA 117

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           K+ + G  P   ++  ++  L  + ++  A  F+  +   G Q    S   LI  LC+  
Sbjct: 118 KILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCR-V 176

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G   AA ++ R +  +   P+   Y T+I+ +C+   + +A +L+ EM +K  SP VVTY
Sbjct: 177 GETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTY 236

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           +SLI+G C    ++ A+ LF  M S  + PNV+T+S L+DG CK G   +A  +L +M+ 
Sbjct: 237 SSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMK 296

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K  + ++VTY++L++G C   ++ +A  + + M  +G+ PD   Y  +I+ FC I    E
Sbjct: 297 KNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDE 356

Query: 350 AANFLDEMVLGGITPNRLTWS---------------------LHIR-------IHNTVVQ 381
           A    +EM    I PN +T++                     +H R        +N+++ 
Sbjct: 357 AMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILD 416

Query: 382 GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            +CK +  ++A  +   ++ + I  D  TY+ LI   CK G +  + ++ ++L++ G  P
Sbjct: 417 AICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSP 476

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +  T+++++    ++    +   +L     N C+   +
Sbjct: 477 NIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAI 514



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 174/338 (51%), Gaps = 4/338 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K VN A   FD      +     D  T+S +IS      + + A DL +R+  +  +  
Sbjct: 211 DKLVNDA---FDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPN 267

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              F  +  G+ +  +  +A  V   M +   +    +Y +++       Q+  A   + 
Sbjct: 268 VYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFN 327

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M + G+ P V S +++I   CK    +D A K+F EM  +   P+  TY +L++GLC+ 
Sbjct: 328 VMAQRGVTPDVWSYSIMINGFCK-IKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKS 386

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G+   A EL  EM  +     ++TY S+++ +C++  V++A+ L  +++ KG++P++FTY
Sbjct: 387 GRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTY 446

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + L++GLCK G    A ++ + ++ K + PNI TY++L+NG C +G   E + +L +MK 
Sbjct: 447 TVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKD 506

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
            G  P+A  Y  +I    +  +  +A   L EM+  G+
Sbjct: 507 NGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 142/313 (45%), Gaps = 43/313 (13%)

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P +  +G ++  L +  +   A  L ++ME     P  +T   L+N   Q   ++ +  +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F ++  KG  P+  T++ L+ GLC  G   +A+     ++++  + + V+Y TL+NGLC+
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCR 175

Query: 309 EGKLQEAVEILDR-----------------------------------MKLQGLKPDAGL 333
            G+ + AV++L R                                   M  + + PD   
Sbjct: 176 VGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVT 235

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AF 392
           Y  +IS FC +GK + A +  + M+   I PN  T+S+       ++ G CK    R A 
Sbjct: 236 YSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSI-------LIDGFCKEGKVREAK 288

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            V   M  +++ +D +TY+SL+  +C    ++K+  + + +   G  PD  ++S ++   
Sbjct: 289 NVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGF 348

Query: 453 WDRRKMRQAAELL 465
              + + +A +L 
Sbjct: 349 CKIKMVDEAMKLF 361


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 202/405 (49%), Gaps = 11/405 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  +++ +I  L  A +   A +L   +++    +    + ++ +G     R  + 
Sbjct: 218 GFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHM----YAALVKGLCNAERGEEG 273

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  +MKE G  P+ ++Y  V+     E + K A    + M E G+ PCV +   +I A
Sbjct: 274 LLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA 333

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M  A ++   M  RGC P+ +TY  L+ G C  GK+++A  L  +M     +P
Sbjct: 334 YCKE-GRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNP 392

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY  LI G C    +E A RL   M   G+  + +TY++L++ LCK G + QA  L 
Sbjct: 393 DAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF 452

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             + ++  +PN VT+++L+NGLCK GK   A + L++M   G  PD   Y   I   C +
Sbjct: 453 DSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKM 512

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
              QE  +F+ EM+   + P+ + ++  I IH      L + +     + +  M +   +
Sbjct: 513 KGSQEGLSFIGEMLQKDVKPSTVNYT--IVIHKL----LKERNYGLVARTWGEMVSSGCN 566

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++ +  +C +G ++++  ++ E+  +G   D   ++ +M
Sbjct: 567 PDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 611



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 193/393 (49%), Gaps = 62/393 (15%)

Query: 121 KSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
           + + ++LA L       LA R + HM R     P   + N +I++LC+ +  +  A +  
Sbjct: 118 RPFASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRA-DLARALRYL 176

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  PD+YT+ +LI G CR  ++  A++LF +M  +  +  VV+Y +LI GLC++
Sbjct: 177 SLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEA 236

Query: 240 KSVEEAMRLFEE-------------------------------MRSKGVEPNVFTYSSLM 268
             ++EA+ LF E                               M+  G  P+   Y++++
Sbjct: 237 GRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVV 296

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           D  C+   + +A E+LQ M  K   P +VT + ++N  CKEG++ +A+ +L+ MKL+G K
Sbjct: 297 DFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCK 356

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------------- 374
           P+   Y  ++  FC+ GK  +A   L++M   G+ P+ +T++L IR              
Sbjct: 357 PNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRL 416

Query: 375 --------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
                          +N ++  LCK    ++A  ++ S+  R I  +++T++SLI   CK
Sbjct: 417 LRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCK 476

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            G    + + ++++V  GC PD  T+S+ +  L
Sbjct: 477 SGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHL 509



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 206/452 (45%), Gaps = 47/452 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+R     ++ ++       + + AE++L  + ++          ++   Y +  R  DA
Sbjct: 284 GWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDA 343

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +RV + MK  GC+P   +Y  ++     E ++  A      MR  G+ P   + N+LI+ 
Sbjct: 344 LRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRG 403

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C + G +++AF++ R M   G   D YTY  LIN LC+ G+  +A  LF  +ET+   P
Sbjct: 404 QCID-GHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKP 462

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM--- 281
             VT+ SLINGLC+S   + A +  E+M S G  P+ +TYSS ++ LCK   S + +   
Sbjct: 463 NAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFI 522

Query: 282 -ELLQM-------------------------------MISKRHRPNIVTYSTLLNGLCKE 309
            E+LQ                                M+S    P++VTY+T +   C E
Sbjct: 523 GEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIE 582

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+L EA  +L  M   G+  D   Y  ++     IG+   A + L +M      PN+ T+
Sbjct: 583 GRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTY 642

Query: 370 SLHIR--IHNTVVQGLCKTDP---------NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            + +R  +   +V+ +    P            F ++  M+      +S TYSS++  F 
Sbjct: 643 FILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFS 702

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           + G   ++  +V  +  D    +E  ++A++T
Sbjct: 703 EDGRTEEATSLVSLMKEDSISLNEDIYTALVT 734



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 196/415 (47%), Gaps = 48/415 (11%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F S+  GY R ++   A  +FDKM   G      SY T++  L E  ++  A   +  M 
Sbjct: 191 FNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD 250

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
               QP +     L+K LC N+   +    + R M   G  P +  Y  +++  CR  K 
Sbjct: 251 ----QPDMHMYAALVKGLC-NAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKA 305

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA+E+ +EM  K  +P VVT T++IN  C+   + +A+R+ E M+ +G +PNV+TY++L
Sbjct: 306 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNAL 365

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G C  G   +AM LL  M +    P+ VTY+ L+ G C +G ++ A  +L  M+  GL
Sbjct: 366 VQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGL 425

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT- 386
             D   Y  +I+  C  G+  +A +  D +   GI PN +T+       N+++ GLCK+ 
Sbjct: 426 IADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTF-------NSLINGLCKSG 478

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK-KGD----------------------- 422
             + A++    M +   + D+ TYSS I   CK KG                        
Sbjct: 479 KADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYT 538

Query: 423 --IHK---------SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
             IHK          AR   E+V  GC PD  T++  M A     ++ +A  +L+
Sbjct: 539 IVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLM 593



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/431 (22%), Positives = 182/431 (42%), Gaps = 26/431 (6%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            +G   D  T++ +I+ L    +   A  L D +           F S+  G  +  +  
Sbjct: 422 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 481

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A +  +KM   GC P   +Y + +  L +    +    F   M +  ++P   +  ++I
Sbjct: 482 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 541

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K       A + + EM + GC PD  TY T +   C  G++ EA+ +  EM     
Sbjct: 542 HKLLKERNYGLVA-RTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV 600

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM-------------- 268
           +   + Y +L++G       + A+ + ++M S    PN FTY  L+              
Sbjct: 601 TVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLP 660

Query: 269 ---DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
               G+ K    +    L  +M      PN  TYS++L G  ++G+ +EA  ++  MK  
Sbjct: 661 LTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKED 720

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-C 384
            +  +  +Y  +++CFC   +Y +A   +  M+  G  P  +++         ++ GL C
Sbjct: 721 SISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSY-------QHLLSGLIC 773

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           +   ++A +++++ R +  S D + +  +I    KKG    S  ++  L    C P   T
Sbjct: 774 EGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQT 833

Query: 445 WSAVMTALWDR 455
           ++ +   L DR
Sbjct: 834 YAMLTEELPDR 844



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 13/274 (4%)

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKAC-SPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           + +L+  L R      A  LF  M   A  +PT  TY ++I  LC+   +  A+R    M
Sbjct: 120 FASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLM 179

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
              G  P+ +T++SL+ G C+      A +L   M  +    ++V+Y+TL+ GLC+ G++
Sbjct: 180 VRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRI 239

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EAVE+   M     +PD  +Y  ++   C+  + +E    L  M         L W   
Sbjct: 240 DEAVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRM-------KELGWRPS 288

Query: 373 IRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
            R +  VV   C+      A ++   M  + ++   +T +++I  +CK+G +  + R+++
Sbjct: 289 TRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLE 348

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + L GC P+  T++A++    +  K+ +A  LL
Sbjct: 349 LMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLL 382


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 223/479 (46%), Gaps = 58/479 (12%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           ++  +V++L+++EK+ + AL IFDS T     G+ H    F  ++ +L     F P    
Sbjct: 8   LSPKRVIKLLKSEKNPHSALSIFDSVTR--FPGYSHTPYVFHHILKRL-----FDPK--- 57

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILV 131
                             +   Y +   P  A+ +F +M E FGC+P  +SY ++L  L+
Sbjct: 58  -----------------LVAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALI 100

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           E N+   A  F+ +   +G+ P + + N+LIK  C+     D A ++   M  +G +PD 
Sbjct: 101 ESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKK-QFDKAKELLNWMWGQGFSPDV 159

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           ++YGTLIN L + G + +A +LF EM  +  +P V  Y  LI+G  +   +  A  ++E 
Sbjct: 160 FSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWER 219

Query: 252 -MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            ++   V PN+ +Y+ +++GLCK G   ++ E+   M       ++ TYSTL++GLC  G
Sbjct: 220 LLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSG 279

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM------------- 357
            L  A  +   M   G+ PD  +Y  +++ +   G+ +E       M             
Sbjct: 280 NLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNI 339

Query: 358 VLGGITPNRLT------WSL--------HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           ++ G+  N         W L            +  +V GLCK    N+A  +     N  
Sbjct: 340 LIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGR 399

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             +D+  YSS+I   C++G + + A ++D++   GC P+    +AV+       K+  A
Sbjct: 400 GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDA 458



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 216/463 (46%), Gaps = 58/463 (12%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL-- 102
           G   +  T++++I       QF  A++LL+ +  +    + D+F      YG +   L  
Sbjct: 119 GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQ--GFSPDVF-----SYGTLINSLAK 171

Query: 103 -----DAMRVFDKMKEFGCEPTPKSY-ITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
                DA+++FD+M E G  P    Y I +     + + L  +  + R ++   + P + 
Sbjct: 172 NGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIP 231

Query: 157 SLNVLIKALCK----------------------------------NSGTMDAAFKIFREM 182
           S NV+I  LCK                                   SG +D A ++++EM
Sbjct: 232 SYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM 291

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
              G +PD   Y T++NG  R G+I E  EL+K ME + C  TVV+Y  LI GL ++  V
Sbjct: 292 AENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKV 350

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           +EA+ ++E +  K    +  TY  L+ GLCK G  ++A+ +L+   + R   +   YS++
Sbjct: 351 DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 410

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           +NGLC+EG+L E   +LD+M   G KP+  +   +I+ F    K ++A  F   MV  G 
Sbjct: 411 INGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGC 470

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P  +T       +NT++ GL K +  + A+ +   M  +    + +TYS L+   C+  
Sbjct: 471 FPTVVT-------YNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGK 523

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            +  +  +  + +  G  PD    + ++  L    K+  A +L
Sbjct: 524 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQL 566



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 155/334 (46%), Gaps = 43/334 (12%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D+ T+ +++  L        A  +L+     + D+    + S+  G  R  R  +   V 
Sbjct: 368 DSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVL 427

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M + GC+P P  Y+                             C A +N  ++A    
Sbjct: 428 DQMTKHGCKPNP--YV-----------------------------CNAVINGFVRA---- 452

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
              ++ A + F  M ++GC P   TY TLINGL +  +  EA  L KEM  K   P ++T
Sbjct: 453 -SKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMIT 511

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y+ L+NGLCQ K ++ A+ L+ +   KG +P+V  ++ ++ GLC  G    A++L   M 
Sbjct: 512 YSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 571

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   PN+VT++TL+ G  K    + A +I D +   GL+PD   Y   +   C   +  
Sbjct: 572 QRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRIS 631

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           +A  FL++ V  G+ P  +TW       N +VQG
Sbjct: 632 DAVGFLNDAVDRGVLPTAITW-------NILVQG 658



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 169/354 (47%), Gaps = 13/354 (3%)

Query: 35  FDSATAEYA----NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
            D AT  Y     NG   D   ++ M++  + A +     +L   + KE C       + 
Sbjct: 281 LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNIL 340

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           I RG     +  +A+ +++ + E  C     +Y  ++  L +   L  A           
Sbjct: 341 I-RGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGR 399

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
                 + + +I  LC+  G +D    +  +M   GC P+ Y    +ING  R  K+ +A
Sbjct: 400 GDLDTFAYSSMINGLCR-EGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDA 458

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
              F  M +K C PTVVTY +LINGL +++   EA  L +EM  KG +PN+ TYS LM+G
Sbjct: 459 LRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNG 518

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC+G     A+ L    + K  +P++  ++ +++GLC  GK+++A+++   MK +   P+
Sbjct: 519 LCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPN 578

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
              +  ++  F  +  ++ A+   D ++  G+ P+ ++       +N  ++GLC
Sbjct: 579 LVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIIS-------YNITLKGLC 625



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 149/298 (50%), Gaps = 8/298 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTF--SLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +NKAL I + A     NG R D  TF  S MI+ L    +      +LD++ K  C    
Sbjct: 385 LNKALSILEEAE----NG-RGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNP 439

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +  ++  G+ R  +  DA+R F  M   GC PT  +Y T++  L +  +   A+   + 
Sbjct: 440 YVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKE 499

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M + G +P + + ++L+  LC+    +D A  ++ +   +G  PD   +  +I+GLC  G
Sbjct: 500 MLQKGWKPNMITYSLLMNGLCQGK-KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 558

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+ +A +L+ EM+ + C P +VT+ +L+ G  + +  E A ++++ +   G++P++ +Y+
Sbjct: 559 KVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYN 618

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
             + GLC     S A+  L   + +   P  +T++ L+ G        E V +   MK
Sbjct: 619 ITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYLALKGYMEPVFVPASMK 676


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 199/370 (53%), Gaps = 15/370 (4%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           RVH  L       +M E GC P  + Y T++  + ++   ++A      M   G++P V 
Sbjct: 241 RVHEALS------QMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVV 294

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
             N ++K LC ++   + A  +  EM    C  D  T+  L++  C+ G +    EL ++
Sbjct: 295 CYNTVLKGLC-SAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQ 353

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M    C P V+TYT++ING C+   V+EA+ L + M + G +PN  +Y+ ++ GLC+   
Sbjct: 354 MLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAER 413

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
              A EL+  MI +   PN VT++TL+N +CK+G  ++A+E+L +M + G  PD   Y  
Sbjct: 414 WVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYST 473

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVY 395
           +I      GK +EA   L+ M+  GITPN +       I++++   L +    ++  Q++
Sbjct: 474 VIDGLGKAGKTEEALELLNVMINKGITPNTI-------IYSSMASALSREGRTDKIIQMF 526

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            S+++ ++  D+  Y+++I+  CK+ +  ++      +V +GC+P+E T++ ++  L   
Sbjct: 527 DSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASE 586

Query: 456 RKMRQAAELL 465
             +R+A +LL
Sbjct: 587 GLVREAQDLL 596



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 192/415 (46%), Gaps = 25/415 (6%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED----IFLSICRGYGRVHRPLDAMRV 107
           T+  ++  L +      A  +LD +    C  T      I  + CRG G       A+R 
Sbjct: 110 TYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGF----RSAVRA 165

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
              +   GC     +   V++ + E+  +       R +   G +P + S N ++K LC 
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 168 NSGTMDA---------AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
                D            +   +MP  GCTPD   Y T+I+G+C+ G    A ++   M 
Sbjct: 226 AKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMP 285

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +    P VV Y +++ GLC ++  EEA  L  EM  +    +  T++ L+D  C+ G   
Sbjct: 286 SYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVD 345

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           + +ELL+ M+     P+++TY+T++NG CKEG + EAV +L  M   G KP+   Y  ++
Sbjct: 346 RVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVL 405

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
              C   ++ +A   +  M+  G  PN +T+       NT++  +CK     +A ++   
Sbjct: 406 KGLCRAERWVDAQELISHMIQQGCLPNPVTF-------NTLINFMCKKGLAEQAIELLKQ 458

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           M     S D ++YS++I    K G   ++  +++ ++  G  P+   +S++ +AL
Sbjct: 459 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASAL 513



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 166/333 (49%), Gaps = 42/333 (12%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G + +   ++ ++  L SA ++  AEDLL  + +E C   D+T +I +      G V R 
Sbjct: 288 GLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDR- 346

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
              + + ++M E GC P   +Y TV                                   
Sbjct: 347 --VIELLEQMLEHGCIPDVITYTTV----------------------------------- 369

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK  G +D A  + + M   GC P++ +Y  ++ GLCR  +  +A+EL   M  + 
Sbjct: 370 INGFCKE-GLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG 428

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P  VT+ +LIN +C+    E+A+ L ++M   G  P++ +YS+++DGL K G + +A+
Sbjct: 429 CLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 488

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ELL +MI+K   PN + YS++ + L +EG+  + +++ D ++   ++ DA LY  +IS  
Sbjct: 489 ELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSL 548

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           C   +   A +F   MV  G  PN  T+++ IR
Sbjct: 549 CKRWETDRAIDFFAYMVSNGCMPNESTYTILIR 581



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 181/370 (48%), Gaps = 22/370 (5%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS---LNVLIKALCKNSGTMDA 174
           P P +  T   I+       L       + E+ ++ C A+    +V+++A C+  G   +
Sbjct: 103 PVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGG-FRS 161

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A +  + +  +GCT DS     +++ +C  G + E  EL +++ +  C P +V+Y +++ 
Sbjct: 162 AVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLK 221

Query: 235 GLCQSK---SVEEAM----RLFE---EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           GLC +K    VEE M    R+ E   +M   G  P++  Y++++DG+CK G    A ++L
Sbjct: 222 GLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDIL 281

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M S   +PN+V Y+T+L GLC   + +EA ++L  M  +    D   +  ++  FC  
Sbjct: 282 SRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQN 341

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSI 403
           G        L++M+  G  P+ +T++       TV+ G CK    + A  +  +M     
Sbjct: 342 GLVDRVIELLEQMLEHGCIPDVITYT-------TVINGFCKEGLVDEAVMLLKNMSACGC 394

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             ++++Y+ ++   C+      +  ++  ++  GCLP+  T++ ++  +  +    QA E
Sbjct: 395 KPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIE 454

Query: 464 LLLLELMNKC 473
           LL   L+N C
Sbjct: 455 LLKQMLVNGC 464



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 162/341 (47%), Gaps = 24/341 (7%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           R +   G    V + N +I   C+ +G + AA ++   +P     P++YTY  ++  LC 
Sbjct: 65  RALDTAGDAAGVVAYNAMIAGYCR-AGQVAAARRLAAAVP---VPPNAYTYFPIVRSLCA 120

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G I +A  +  EM  + C+ T      ++   C+      A+R  + + +KG   +   
Sbjct: 121 RGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGN 180

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI----- 318
            + ++  +C+ GC  + +ELL+ + S    P+IV+Y+ +L GLC   +  +  E+     
Sbjct: 181 CNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMV 240

Query: 319 -----LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
                L +M   G  PD  +Y  II   C  G ++ A + L  M   G+ PN       +
Sbjct: 241 RVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPN-------V 293

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
             +NTV++GLC  +    A  +   M      +D +T++ L+  FC+ G + +   ++++
Sbjct: 294 VCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQ 353

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++  GC+PD  T++ V+        + +A  ++LL+ M+ C
Sbjct: 354 MLEHGCIPDVITYTTVINGFCKEGLVDEA--VMLLKNMSAC 392



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 152/329 (46%), Gaps = 19/329 (5%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++++LC   G +  A  +  EMP RGC         ++   CR G    A    + +  K
Sbjct: 114 IVRSLCAR-GLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAK 172

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C+        +++ +C+   V+E + L  ++ S G EP++ +Y++++ GLC        
Sbjct: 173 GCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDV 232

Query: 281 MELLQMMISKRH----------RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
            EL+  M+               P++  Y+T+++G+CK+G  + A +IL RM   GLKP+
Sbjct: 233 EELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPN 292

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PN 389
              Y  ++   C   +++EA + L EM       + +T+       N +V   C+    +
Sbjct: 293 VVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTF-------NILVDFFCQNGLVD 345

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           R  ++   M       D +TY+++I  FCK+G + ++  ++  +   GC P+  +++ V+
Sbjct: 346 RVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVL 405

Query: 450 TALWDRRKMRQAAELLLLELMNKCVEAEV 478
             L    +   A EL+   +   C+   V
Sbjct: 406 KGLCRAERWVDAQELISHMIQQGCLPNPV 434



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 1/248 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++ +I+          A  LL  ++   C      +  + +G  R  R +D
Sbjct: 357 HGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVD 416

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +   M + GC P P ++ T++  + ++   + A    + M   G  P + S + +I 
Sbjct: 417 AQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVID 476

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K +G  + A ++   M N+G TP++  Y ++ + L R G+  +  ++F  ++     
Sbjct: 477 GLGK-AGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVR 535

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
                Y ++I+ LC+    + A+  F  M S G  PN  TY+ L+ GL   G   +A +L
Sbjct: 536 SDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDL 595

Query: 284 LQMMISKR 291
           L  + S+R
Sbjct: 596 LSELCSRR 603



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 116/281 (41%), Gaps = 24/281 (8%)

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            LI  LC  G+  +A    + ++T   +  VV Y ++I G C++  V  A RL   +   
Sbjct: 49  ALIRSLCAAGRTADAA---RALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP-- 103

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
            V PN +TY  ++  LC  G  + A+ +L  M  +           +L   C+ G  + A
Sbjct: 104 -VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSA 162

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           V  L  +  +G   D+G    ++S  C+ G   E    L ++   G  P+ +++      
Sbjct: 163 VRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSY------ 216

Query: 376 HNTVVQGLCKT-----------DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            N V++GLC             +  R  +    M     + D   Y+++I   CK G   
Sbjct: 217 -NAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHE 275

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  I+  +   G  P+   ++ V+  L    +  +A +LL
Sbjct: 276 VANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLL 316


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 199/385 (51%), Gaps = 23/385 (5%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE---------- 148
           H+   ++  F K+ + G +P   ++ T+L  L  E+++  A   + +M E          
Sbjct: 155 HKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVE 214

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
           IG+ P V + N LI  LC     ++AA  +  +M  +G   D  TYGT++NG+C++G   
Sbjct: 215 IGLTPVVITFNTLINGLCLEGRVLEAA-ALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTK 273

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
            A  L  +ME     P VV Y+++I+ LC+     +A  LF EM  KG+ PNVFTY+ ++
Sbjct: 274 SALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 333

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DG C  G  S A  LL+ MI +   P+++T++ L++   KEGKL EA ++ D M  + + 
Sbjct: 334 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 393

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD- 387
           PD   Y  +I  FC   ++ +A +  D M     +P+ +T+       NT++   C+   
Sbjct: 394 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTF-------NTIIDVYCRAKR 442

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            +   Q+   +  R +  ++ TY++LI  FC+  +++ +  +  E++  G  PD  T + 
Sbjct: 443 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 502

Query: 448 VMTALWDRRKMRQAAELLLLELMNK 472
           ++    +  K+ +A EL  +  M+K
Sbjct: 503 LLYGFCENEKLEEALELFEVIQMSK 527



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 205/424 (48%), Gaps = 13/424 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             G   D  T+  +++ +      + A +LL ++ +        I+ +I     +     
Sbjct: 249 GKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 308

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F +M E G  P   +Y  ++       +   A R  R M E  I P V + N LI
Sbjct: 309 DAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 368

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  K  G +  A K+  EM +R   PD+ TY ++I G C+  +  +AK +F  M     
Sbjct: 369 SASVK-EGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----A 423

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP VVT+ ++I+  C++K V+E M+L  E+  +G+  N  TY++L+ G C+    + A +
Sbjct: 424 SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 483

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L Q MIS    P+ +T + LL G C+  KL+EA+E+ + +++  +  D   Y  II   C
Sbjct: 484 LFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMC 543

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
              K  EA +    + + G+ P+       ++ +N ++ G C K+  + A  ++  M++ 
Sbjct: 544 KGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMISGFCGKSAISDANVLFHKMKDN 596

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D+ TY++LI    K G+I KS  ++ E+  +G   D  T   V   + D R  +  
Sbjct: 597 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRLDKSF 656

Query: 462 AELL 465
           +++L
Sbjct: 657 SDML 660



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 180/373 (48%), Gaps = 21/373 (5%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  FD M       T      V+ + V  N+  +A   YR M    I   + S N+LI
Sbjct: 89  DAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC----------RLGKIYEAKE 212
           K  C +   +  +   F ++   G  PD  T+ TL++GLC            G + E   
Sbjct: 149 KCFC-DCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGS 207

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           LF +M     +P V+T+ +LINGLC    V EA  L  +M  KG+  +V TY ++++G+C
Sbjct: 208 LFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMC 267

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G +  A+ LL  M     +P++V YS +++ LCK+G   +A  +   M  +G+ P+  
Sbjct: 268 KMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVF 327

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF 392
            Y  +I  FC  G++ +A   L +M+   I P+ LT++    I  +V +G        A 
Sbjct: 328 TYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFN--ALISASVKEG----KLFEAE 381

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++   M +R I  D++TY+S+I  FCK      +  + D +      PD  T++ ++   
Sbjct: 382 KLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVY 437

Query: 453 WDRRKMRQAAELL 465
              +++ +  +LL
Sbjct: 438 CRAKRVDEGMQLL 450



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 183/367 (49%), Gaps = 13/367 (3%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R L+A  + +KM   G      +Y T++  + +    K A      M E  I+P V   +
Sbjct: 236 RVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYS 295

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I  LCK+    DA + +F EM  +G  P+ +TY  +I+G C  G+  +A+ L ++M  
Sbjct: 296 AIIDRLCKDGHHSDAQY-LFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE 354

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +  +P V+T+ +LI+   +   + EA +L +EM  + + P+  TY+S++ G CK      
Sbjct: 355 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 414

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  +  +M S    P++VT++T+++  C+  ++ E +++L  +  +GL  +   Y  +I 
Sbjct: 415 AKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 470

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
            FC++     A +   EM+  G+ P+ +T        N ++ G C+ +    A +++  +
Sbjct: 471 GFCEVDNLNAAQDLFQEMISHGVCPDTITC-------NILLYGFCENEKLEEALELFEVI 523

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           +   I +D++ Y+ +I   CK   + ++  +   L + G  PD  T++ +++    +  +
Sbjct: 524 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAI 583

Query: 459 RQAAELL 465
             A  L 
Sbjct: 584 SDANVLF 590



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 146/289 (50%), Gaps = 19/289 (6%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +I    R+ +   A  L+++ME +     + ++  LI   C    +  ++  F ++   G
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH----------RPNIVTYSTLLNGL 306
            +P+V T+++L+ GLC     S+A+ L   M+               P ++T++TL+NGL
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGL 231

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           C EG++ EA  ++++M  +GL  D   YG I++  C +G  + A N L +M    I P+ 
Sbjct: 232 CLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPD- 290

Query: 367 LTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHK 425
                 + I++ ++  LCK   +   Q   S M  + I+ +  TY+ +I  FC  G    
Sbjct: 291 ------VVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSD 344

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           + R++ +++     PD  T++A+++A     K+ + AE L  E++++C+
Sbjct: 345 AQRLLRDMIEREINPDVLTFNALISASVKEGKLFE-AEKLCDEMLHRCI 392



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 1/240 (0%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           FD A   +      D  TF+ +I     A +      LL  +++         + ++  G
Sbjct: 412 FDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHG 471

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           +  V     A  +F +M   G  P   +   +L    E  +L+ A   +  ++   I   
Sbjct: 472 FCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLD 531

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             + N++I  +CK S  +D A+ +F  +P  G  PD  TY  +I+G C    I +A  LF
Sbjct: 532 TVAYNIIIHGMCKGS-KVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLF 590

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            +M+     P   TY +LI G  ++  +++++ L  EMRS G   + FT   + D +  G
Sbjct: 591 HKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDG 650


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 182/360 (50%), Gaps = 37/360 (10%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +LN LIK LC  + T DA   +FR MP  G TPD ++Y  LI GLC   K  EA EL   
Sbjct: 128 TLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIH 187

Query: 217 METKA---CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           M       CSP VV+Y ++I+G  +   V++A  LF EM  +G+ P+V TY+SL+DGLCK
Sbjct: 188 MTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCK 247

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                +A+ +LQ M  K   P+  TY+ ++ G C  G+L+EAV +L +M   GL+PD   
Sbjct: 248 AQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVT 307

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG----------L 383
           Y  +I  +C IG+  EA +  D MV  G  PN   +  HI +H    +G          L
Sbjct: 308 YSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIY--HILLHGYATKGALIDVRDLLDL 365

Query: 384 CKTD----PNRAFQV-----------------YLSMRNRSISVDSLTYSSLITCFCKKGD 422
              D     +RAF +                 +  MR   +  D ++YS++I   CK G 
Sbjct: 366 MIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGR 425

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +  +    +++V +G  P+  ++++++  L    + ++  E L  E++N+ +  +    N
Sbjct: 426 VEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEE-LAFEMINRGIHPDAIFMN 484



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 231/479 (48%), Gaps = 41/479 (8%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           ++KA+ I       +  G   D  T+++MI    S  Q   A  LL +++          
Sbjct: 251 MDKAVAILQHM---FDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVT 307

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  + + Y ++ R  +A  VFD M   G +P      T+  IL+     K A    R + 
Sbjct: 308 YSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNS----TIYHILLHGYATKGALIDVRDLL 363

Query: 148 EIGIQPCVA----SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           ++ I+  +     + N+LI A  K+ G +D A   F EM   G  PD  +Y T+I+ LC+
Sbjct: 364 DLMIRDGIPFEHRAFNILICAYAKH-GAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCK 422

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G++ +A   F +M ++  SP ++++TSLI+GLC     ++   L  EM ++G+ P+   
Sbjct: 423 TGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIF 482

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            +++MD LCK G   +A +   M+I    +P++V+Y+TL++G C  GK+ E+++ LDRM 
Sbjct: 483 MNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMV 542

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV--------------------LGGIT 363
             GL+PD+  Y  +++ +   G+ ++A     EM                      G I 
Sbjct: 543 SIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIV 602

Query: 364 PNRLTW--------SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLI 414
             R  +         L I  +NTV+ GLC+    + A +++  +R++   +D  T+S +I
Sbjct: 603 AARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVI 662

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
               K G I ++  +   +VL G +PD  T+S ++ +  +   + ++  L L    N C
Sbjct: 663 NALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGC 721



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 135/501 (26%), Positives = 229/501 (45%), Gaps = 50/501 (9%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN 64
           TM +    + +A +  LIR    V +  + F +       G+R  N T + +I  L   N
Sbjct: 81  TMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGN 140

Query: 65  QFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLDAMRVFDKMKE---FGCEPT 119
           +   A D++ R   E    T D+F   ++ +G     +  +A+ +   M     + C P 
Sbjct: 141 RTDDAMDMVFRRMPE-LGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPN 199

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
             SY TV+    +E ++  A+  +  M   G+ P V + N LI  LCK +  MD A  I 
Sbjct: 200 VVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCK-AQAMDKAVAIL 258

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           + M ++G  PD+ TY  +I G C LG++ EA  L K+M      P VVTY+ LI   C+ 
Sbjct: 259 QHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKI 318

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK--------- 290
               EA  +F+ M  KG +PN   Y  L+ G    G      +LL +MI           
Sbjct: 319 GRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAF 378

Query: 291 --------RH------------------RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
                   +H                  RP++V+YST+++ LCK G++++AV   ++M  
Sbjct: 379 NILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVS 438

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +GL P+   +  +I   C IG++++      EM+  GI P+ +         NT++  LC
Sbjct: 439 EGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAI-------FMNTIMDNLC 491

Query: 385 KTDPNRAFQVYLSMR-NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K       Q +  M  +  +  D ++Y++LI  +C  G + +S + +D +V  G  PD  
Sbjct: 492 KEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSW 551

Query: 444 TWSAVMTALWDRRKMRQAAEL 464
           T+++++   +   ++  A  L
Sbjct: 552 TYNSLLNGYFKNGRVEDALAL 572



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 221/472 (46%), Gaps = 48/472 (10%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +A  +FDS   +   G + +++ + +++    +        DLLD + ++        F 
Sbjct: 323 EARSVFDSMVRK---GQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFN 379

Query: 90  SICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
            +   Y + H  +D AM  F +M++ G  P   SY TV+ IL +  +++ A   +  M  
Sbjct: 380 ILICAYAK-HGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVS 438

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G+ P + S   LI  LC + G      ++  EM NRG  PD+    T+++ LC+ G++ 
Sbjct: 439 EGLSPNIISFTSLIHGLC-SIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVV 497

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           EA++ F  +      P VV+Y +LI+G C    ++E+++  + M S G+ P+ +TY+SL+
Sbjct: 498 EAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLL 557

Query: 269 DGLCKGGCSSQAM-----------------------------------ELLQMMISKRHR 293
           +G  K G    A+                                   EL   M+ +  +
Sbjct: 558 NGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQ 617

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
             I TY+T+L GLC+   + EA+ + + ++ +  + D   +  +I+    +G+  EA + 
Sbjct: 618 LRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSL 677

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
              MVL G  P+ +T+SL I+ H  + +GL +   N    ++LSM     + DS   + +
Sbjct: 678 FSAMVLRGPVPDVITYSLMIKSH--IEEGLLEESDN----LFLSMEKNGCAADSHMLNII 731

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +    +KGD+ ++   + + + +     E + +A++  +   +K ++  + L
Sbjct: 732 VRRLLEKGDVRRAGTYLTK-IDEKNFSLEASTAALLIPIVSEKKYQKEVKFL 782



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 19/269 (7%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE-------AMRLFEEMRSKGVEPNV 261
           +A  LF E+  +A   +V  + S++  + ++ S          A+ LF  M   GV    
Sbjct: 32  DALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGVNMMA 91

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE-ILD 320
                L+   C  G    A     + +    R   VT + L+ GLC   +  +A++ +  
Sbjct: 92  AIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFR 151

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG---ITPNRLTWSLHIRIHN 377
           RM   G  PD   Y  +I   C   K QEA   L  M   G    +PN +++       N
Sbjct: 152 RMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSY-------N 204

Query: 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           TV+ G  K  + ++A+ ++  M  + +  D +TY+SLI   CK   + K+  I+  +   
Sbjct: 205 TVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDK 264

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G +PD  T++ ++       ++ +A  LL
Sbjct: 265 GVMPDTRTYNIMIRGYCSLGQLEEAVRLL 293



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 5/223 (2%)

Query: 36  DSATAEYANGFRHDNS----TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91
           + A A Y   FR D      T ++M+  L  A +   A +L  ++      +  + + ++
Sbjct: 567 EDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTV 626

Query: 92  CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151
             G        +A+R+F+ ++    E   +++  V+  L++  ++  A   +  M   G 
Sbjct: 627 LGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGP 686

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
            P V + +++IK+  +  G ++ +  +F  M   GC  DS+    ++  L   G +  A 
Sbjct: 687 VPDVITYSLMIKSHIE-EGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAG 745

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
               +++ K  S    T   LI  + + K  +E   L E+  S
Sbjct: 746 TYLTKIDEKNFSLEASTAALLIPIVSEKKYQKEVKFLPEKYHS 788


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 130/499 (26%), Positives = 224/499 (44%), Gaps = 50/499 (10%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           ++L+LI++E+D   AL   +   +            F L+     S+    P    L   
Sbjct: 15  RLLELIKSERDPANALSHLELLVSTRPAFPPPQPLIFHLLRRLATSSPSHLPRLLGLLPR 74

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-GCEPTPKSYITVLAILVEENQ 135
            + +   +E   L +   + R   P  A+  F  +    GC P  +S+ T+L   V   +
Sbjct: 75  MRHRPRFSESAALVVLSAFSRALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARR 134

Query: 136 LKLAFRFYRHMREIG----IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              A  F+  +        I P + + N+++++LC   G +D A  +F  +  RG  PD 
Sbjct: 135 YSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCAR-GDVDRAVSLFSSLRRRGVAPDR 193

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY TL++GL +  ++  A +L  EM         V Y +L++G  ++   E+AM+++E+
Sbjct: 194 VTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQ 253

Query: 252 M-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           + R  G  PN+ TY  ++DGLCK G   +A E+   M++  H+ + VTY  L++GLC+ G
Sbjct: 254 LVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSG 313

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI-------- 362
            +  A  +   M   GL  D  +Y  +I  FC++G+  EA  F D     GI        
Sbjct: 314 DVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNI 373

Query: 363 ---------------------------TPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQV 394
                                      +P+++T+        T++ GLC+    NRAF++
Sbjct: 374 MTKGLLDSGMVSEATELLKQLENDASCSPDKVTFG-------TLIHGLCENGYANRAFEI 426

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
               RN    +D  +YSS+I  FCK G  H +  +   +V DGC P+   ++A++     
Sbjct: 427 LEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCR 486

Query: 455 RRKMRQAAELLLLELMNKC 473
             K+  A ++ +    N C
Sbjct: 487 VSKINDAIKIYIEMTSNGC 505



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/507 (26%), Positives = 229/507 (45%), Gaps = 83/507 (16%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           +L+ + A  DV++A+ +F S       G   D  T+S ++S L   +Q   A DLLD + 
Sbjct: 164 ILRSLCARGDVDRAVSLFSSLRRR---GVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMP 220

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQL 136
                     + ++  G  R      AM+V++++ ++ G  P   +Y  +L  L +  + 
Sbjct: 221 NYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRF 280

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           K A   +  M     Q    +  +LI  LC+ SG +D+A +++ +M   G   D   Y +
Sbjct: 281 KEAGEVWSRMMANNHQADTVTYGILIHGLCR-SGDVDSAARVYSDMVKAGLVLDVSVYNS 339

Query: 197 LINGLCRLGK----------------------------------IYEAKELFKEMETKA- 221
           LI G C +G+                                  + EA EL K++E  A 
Sbjct: 340 LIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDAS 399

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP  VT+ +LI+GLC++     A  + E+ R+ G E +VF+YSS+++  CK G +  A 
Sbjct: 400 CSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDAN 459

Query: 282 ELLQMMISKRHRPN-----------------------------------IVTYSTLLNGL 306
           E+ + M+    +PN                                   I+TY+TL++GL
Sbjct: 460 EVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGL 519

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CK  K QEA  +   M  +G KPD   Y  +I   C   K   A    DE++  G+    
Sbjct: 520 CKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGL---- 575

Query: 367 LTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
               + + +HN ++ GLC     + AF +YL M+ ++ S + +TY++L+  F + G I K
Sbjct: 576 ---QVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDK 632

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTAL 452
           +A +   ++ +G  PD  T++  +  L
Sbjct: 633 AASLWTAILDNGLKPDIVTYNTRIKGL 659



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 164/325 (50%), Gaps = 2/325 (0%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRV-NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109
           +T+++M   L+ +     A +LL ++ N   C   +  F ++  G         A  + +
Sbjct: 369 TTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILE 428

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
             +  G E    SY +++    ++ +   A   Y++M + G +P     N LI   C+ S
Sbjct: 429 DARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVS 488

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
              DA  KI+ EM + GC P   TY TLI+GLC+  K  EA  L KEM  +   P + TY
Sbjct: 489 KINDA-IKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTY 547

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            SLI GLC+ K V+ A+R+++E+   G++ +V  ++ L+ GLC  G   +A  +   M  
Sbjct: 548 ASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKE 607

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   PN+VTY+TL++G  + G + +A  +   +   GLKPD   Y   I   C   +  E
Sbjct: 608 KNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPE 667

Query: 350 AANFLDEMVLGGITPNRLTWSLHIR 374
               L+E++  GI P  +TWS+ +R
Sbjct: 668 GVLLLNEVLATGIMPTVITWSILVR 692



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 161/302 (53%), Gaps = 4/302 (1%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           K+T   ++  +      N+A  I + A     +G   D  ++S MI++     +   A +
Sbjct: 404 KVTFGTLIHGLCENGYANRAFEILEDARN---SGEELDVFSYSSMINRFCKDGRTHDANE 460

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           +   + K+ C     ++ ++  G+ RV +  DA++++ +M   GC PT  +Y T++  L 
Sbjct: 461 VYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLC 520

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +  + + A    + M E G +P + +   LI+ LC++   +D A +I+ E+ + G   D 
Sbjct: 521 KAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDK-KVDVALRIWDEILDAGLQVDV 579

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
             +  LI+GLC  GK+ EA  ++ EM+ K CSP +VTY +L++G  +  S+++A  L+  
Sbjct: 580 MVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTA 639

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +   G++P++ TY++ + GLC    + + + LL  +++    P ++T+S L+  + K G 
Sbjct: 640 ILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGP 699

Query: 312 LQ 313
           +Q
Sbjct: 700 IQ 701



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 5/302 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLD--RVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           D  TF  +I  L        A ++L+  R + E+ D+    + S+   + +  R  DA  
Sbjct: 403 DKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFS--YSSMINRFCKDGRTHDANE 460

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           V+  M + GC+P    Y  ++      +++  A + Y  M   G  P + + N LI  LC
Sbjct: 461 VYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLC 520

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K     +A+  + +EM  RG  PD  TY +LI GLCR  K+  A  ++ E+        V
Sbjct: 521 KAEKYQEAS-SLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDV 579

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           + +  LI+GLC +  V+EA  ++ EM+ K   PN+ TY++LMDG  + G   +A  L   
Sbjct: 580 MVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTA 639

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           ++    +P+IVTY+T + GLC   +  E V +L+ +   G+ P    +  ++      G 
Sbjct: 640 ILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGP 699

Query: 347 YQ 348
            Q
Sbjct: 700 IQ 701



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 364 PNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMR--NRSISVDSLTYSSLITCF 417
           P+ L  +  +R HNT++    +    +D + AF   LS     R I+ +  TY+ ++   
Sbjct: 110 PSLLGCNPGVRSHNTLLDAFVRARRYSDAD-AFFASLSHGAFGRRIAPNLQTYNIILRSL 168

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           C +GD+ ++  +   L   G  PD  T+S +M+ L    ++  A + LL E+ N  V+A+
Sbjct: 169 CARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALD-LLDEMPNYGVQAD 227

Query: 478 V 478
            
Sbjct: 228 A 228


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 182/360 (50%), Gaps = 37/360 (10%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +LN LIK LC    T DA   +FR MP  G TPD ++Y  LI GLC   K  EA EL   
Sbjct: 131 TLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLH 190

Query: 217 METKA---CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           M       CSP VV+Y+++I+G  +   V++A  LF+EM  +G  P+V TYSSL+DGLCK
Sbjct: 191 MTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCK 250

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
               ++A  +LQ M  K   PN  TY+ ++ G C  G+L+EAV +L +M   GL+PD   
Sbjct: 251 AQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVT 310

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG----------L 383
           Y  +I  +C IG+  EA +  D MV  G  PN   +  HI +H    +G          L
Sbjct: 311 YILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIY--HILLHGYATKGALIDVRDLLDL 368

Query: 384 CKTD----PNRAFQV-----------------YLSMRNRSISVDSLTYSSLITCFCKKGD 422
              D     +RAF +                 +  MR   +  D ++YS++I   CK G 
Sbjct: 369 MIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGR 428

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +  +    +++V +G  P+  ++++++  L    + ++  E L  E++N+ +  +    N
Sbjct: 429 VEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEE-LAFEMINRGIHPDAIFMN 487



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 243/525 (46%), Gaps = 68/525 (12%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           ++ + ++     E +V+KA  +FD    +   GF  D  T+S +I  L  A     AE +
Sbjct: 204 VSYSTIIDGFFKEGEVDKAYFLFDEMIGQ---GFPPDVVTYSSLIDGLCKAQAMNKAEAI 260

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI-------- 124
           L  +  +        +  + RGY  + +  +A+R+  KM   G +P   +YI        
Sbjct: 261 LQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCK 320

Query: 125 -----------------------TVLAILVEENQLKLAFRFYRHMREIGIQPCVA----S 157
                                  T+  IL+     K A    R + ++ I+  +     +
Sbjct: 321 IGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRA 380

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N+LI A  K+ G +D A   F EM   G  PD  +Y T+I+ LC++G++ +A   F +M
Sbjct: 381 FNILICAYAKH-GAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQM 439

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
            ++  SP ++++TSLI+GLC     ++   L  EM ++G+ P+    +++MD LCK G  
Sbjct: 440 VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRV 499

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A +   M+I    +PN+V+Y+TL++G C  GK+ E+++  DRM   GL+PD+  Y  +
Sbjct: 500 VEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNAL 559

Query: 338 ISCFCDIGKYQEAANFLDEMV--------------------LGGITPNRLTW-------- 369
           ++ +   G+ ++A     EM                      G I   R  +        
Sbjct: 560 LNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGT 619

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
            L I  +NTV+ GLC+    + A +++  +R++   +D  T++ +I    K G I ++  
Sbjct: 620 QLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKS 679

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           +   +VL G +P   T+S ++ +  +   + ++ +L L    N C
Sbjct: 680 LFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGC 724



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 191/433 (44%), Gaps = 69/433 (15%)

Query: 100 RPLDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG---IQPCV 155
           R  DAM  VF +M E G  P   SY  ++  L  E + + A     HM   G     P V
Sbjct: 144 RTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNV 203

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            S + +I    K  G +D A+ +F EM  +G  PD  TY +LI+GLC+   + +A+ + +
Sbjct: 204 VSYSTIIDGFFK-EGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQ 262

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            M  K   P   TY  +I G C    +EEA+RL ++M   G++P+V TY  L+   CK G
Sbjct: 263 HMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIG 322

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD--------------- 320
             ++A  +   M+ K  +PN   Y  LL+G   +G L +  ++LD               
Sbjct: 323 RCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFN 382

Query: 321 --------------------RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
                                M+  GL+PD   Y  +I   C IG+ ++A    ++MV  
Sbjct: 383 ILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSE 442

Query: 361 GITPNRLTWSLHIR----------------------IH------NTVVQGLCKTDPNRAF 392
           G++PN ++++  I                       IH      NT++  LCK       
Sbjct: 443 GLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEA 502

Query: 393 QVYLSMR-NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           Q +  M  +  +  + ++Y++LI  +C  G + +S +  D +V  G  PD  T++A++  
Sbjct: 503 QDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNG 562

Query: 452 LWDRRKMRQAAEL 464
            +   ++  A  L
Sbjct: 563 YFKNGRVEDALAL 575



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 222/472 (47%), Gaps = 48/472 (10%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +A  +FDS   +   G + +++ + +++    +        DLLD + ++        F 
Sbjct: 326 EARSVFDSMVRK---GQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFN 382

Query: 90  SICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
            +   Y + H  +D AM  F +M++ G  P   SY TV+ IL +  +++ A   +  M  
Sbjct: 383 ILICAYAK-HGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVS 441

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G+ P + S   LI  LC + G      ++  EM NRG  PD+    T+++ LC+ G++ 
Sbjct: 442 EGLSPNIISFTSLIHGLC-SIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVV 500

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           EA++ F  +      P VV+Y +LI+G C    ++E+++ F+ M S G+ P+ +TY++L+
Sbjct: 501 EAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALL 560

Query: 269 DGLCKGGCSSQAM-----------------------------------ELLQMMISKRHR 293
           +G  K G    A+                                   EL   M+ +  +
Sbjct: 561 NGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQ 620

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
             I TY+T+L GLC+   + EA+ + + ++ +  + D   +  +I+    +G+  EA + 
Sbjct: 621 LRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSL 680

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
              MVL G  P+ +T+SL I+  + + +GL +   +    ++LSM     + DS   + +
Sbjct: 681 FSAMVLRGPVPHVITYSLMIK--SRIEEGLLEESDD----LFLSMEKNGCAADSHMLNVI 734

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I    +KGD+ ++   + + + +     E + +A++  +   +K ++  + L
Sbjct: 735 IRRLLEKGDVRRAGTYLTK-IDEKNFSVEASTAALLIPIVSEKKYQKEVKFL 785



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/477 (23%), Positives = 220/477 (46%), Gaps = 48/477 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE---KCDITEDIFLSICRGYGRVHRP 101
           G+  D  +++ +I  L    + + A +LL  +  +    C      + +I  G+ +    
Sbjct: 160 GYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEV 219

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A  +FD+M   G  P   +Y +++  L +   +  A    +HM + G+ P   + N++
Sbjct: 220 DKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIM 279

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I+  C + G ++ A ++ ++M   G  PD  TY  LI   C++G+  EA+ +F  M  K 
Sbjct: 280 IRGYC-SLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKG 338

Query: 222 CSPTVVTYTSLING--------------------------------LC---QSKSVEEAM 246
             P    Y  L++G                                +C   +  +V++AM
Sbjct: 339 QKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAM 398

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
             F EMR  G+ P+V +YS+++  LCK G    A+     M+S+   PNI+++++L++GL
Sbjct: 399 TAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGL 458

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           C  G+ ++  E+   M  +G+ PDA     I+   C  G+  EA +F D ++  G+ PN 
Sbjct: 459 CSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNV 518

Query: 367 LTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           +++       NT++ G C     + + + +  M +  +  DS TY++L+  + K G +  
Sbjct: 519 VSY-------NTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVED 571

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +  +  E+          T + ++  L+   ++  A E L ++++++  +  ++  N
Sbjct: 572 ALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARE-LYMKMVDRGTQLRIETYN 627



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 22/272 (8%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE-------AMRLFEEMRSKGVE--- 258
           +A  LF E+  +A   +V  + S++  + ++ S          A+ LF  M   GV    
Sbjct: 32  DALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARSGVNMMA 91

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE- 317
            N +    L+   C  G    A     + +    R   VT + L+ GLC   +  +A++ 
Sbjct: 92  ANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDM 151

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG---ITPNRLTWSLHIR 374
           +  RM   G  PD   Y  +I   C   K QEA   L  M   G    +PN +++S    
Sbjct: 152 VFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYS---- 207

Query: 375 IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              T++ G  K  + ++A+ ++  M  +    D +TYSSLI   CK   ++K+  I+  +
Sbjct: 208 ---TIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHM 264

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              G +P+  T++ ++       ++ +A  LL
Sbjct: 265 FDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLL 296



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 113/247 (45%), Gaps = 23/247 (9%)

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS-----KRHRPNIV 297
           E+A+ LF+E+  +    +V  ++S++  + +   SS       + +S      R   N++
Sbjct: 31  EDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARSGVNMM 90

Query: 298 TYSTLLNGL-----CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
             +  + G+     C  G+L  A          G +       ++I   CD  +  +A +
Sbjct: 91  AANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMD 150

Query: 353 FL-DEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMR---NRSISVDS 407
            +   M   G TP+  ++       N +++GLC +     A ++ L M      + S + 
Sbjct: 151 MVFRRMPELGYTPDVFSY-------NALIKGLCVEKKSQEALELLLHMTADGGYNCSPNV 203

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           ++YS++I  F K+G++ K+  + DE++  G  PD  T+S+++  L   + M + AE +L 
Sbjct: 204 VSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNK-AEAILQ 262

Query: 468 ELMNKCV 474
            + +K V
Sbjct: 263 HMFDKGV 269



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 95/247 (38%), Gaps = 40/247 (16%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDL---LDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           G R D+ T++ +++      +   A  L   + R + + C IT +I L    G  +  R 
Sbjct: 548 GLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIIL---HGLFQAGRI 604

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           + A  ++ KM + G +   ++Y TVL  L E + +  A R +  +R    +  V + N++
Sbjct: 605 VAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIV 664

Query: 162 IKALCK----------------------------------NSGTMDAAFKIFREMPNRGC 187
           I AL K                                    G ++ +  +F  M   GC
Sbjct: 665 INALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGC 724

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
             DS+    +I  L   G +  A     +++ K  S    T   LI  + + K  +E   
Sbjct: 725 AADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNFSVEASTAALLIPIVSEKKYQKEVKF 784

Query: 248 LFEEMRS 254
           L E+  S
Sbjct: 785 LPEKYHS 791


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 207/421 (49%), Gaps = 19/421 (4%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           RH      LM   + +A  F         V +    +  ++   +   +G   R  +A  
Sbjct: 74  RHAPDLRRLMRLYVTAATAF---------VARGSLPMAHEVMRGMVAAFGEAGRLPEAAD 124

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +  +M+  G     ++   VL + +E      A + +  M   G+ P   S   L+   C
Sbjct: 125 MVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCC 184

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           +  G ++    +   M   G + D+ T   ++  LC  G+  +  E F+ M      P V
Sbjct: 185 RE-GKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNV 243

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL-LQ 285
           V YT+ I+GLC+ + V++A  + EEM  +G++PNV+T+++L+DGLCK G + +A  L L+
Sbjct: 244 VNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLK 303

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           ++ S  ++PN+ TY+ ++ G C+EGKL  A  +L RM  QGLKP+   Y  +I   C  G
Sbjct: 304 LIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGG 363

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
            +  A   +++M   G  PN       I  +N V+ G CK      A++V     ++ + 
Sbjct: 364 SFDRAFELMNKMKQEGFLPN-------IYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLK 416

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D +TY+ LIT  CK+G I  +  + D +V +GC PD   ++++++    +R+M ++ + 
Sbjct: 417 FDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKF 476

Query: 465 L 465
            
Sbjct: 477 F 477



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 165/321 (51%), Gaps = 16/321 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           V+  L E+ + K    F+R M E+G  P V +    I  LCK    +  AF +  EM  R
Sbjct: 214 VVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRR-YVKQAFHVLEEMVGR 272

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELF-KEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           G  P+ YT+ TLI+GLC++G    A  LF K +++ +  P V TYT +I G C+   +  
Sbjct: 273 GLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLAR 332

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A  L   M  +G++PN  TY++L+ G CKGG   +A EL+  M  +   PNI TY+ +++
Sbjct: 333 AEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVID 392

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G CK+GK+QEA ++L     QGLK D   Y  +I+  C  G    A +  D MV  G  P
Sbjct: 393 GFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCP 452

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL----TYSSLITCFCKK 420
           +       I  + +++   C+       Q +    ++ + +  L    TY+S+I  +CK 
Sbjct: 453 D-------IEAYTSLISTYCQQRQMEESQKFF---DKCLMIGLLPTKQTYTSMIAGYCKV 502

Query: 421 GDIHKSARIVDELVLDGCLPD 441
           G    + R+ + +V +GC  D
Sbjct: 503 GRSTMALRVFERMVQNGCFAD 523



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           + +A  +   AT++   G + D  T++++I++         A DL DR+ +  C    + 
Sbjct: 400 IQEAYKVLRMATSQ---GLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEA 456

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+   Y +  +  ++ + FDK    G  PT ++Y +++A   +  +  +A R +  M 
Sbjct: 457 YTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMV 516

Query: 148 EIG 150
           + G
Sbjct: 517 QNG 519


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 205/411 (49%), Gaps = 14/411 (3%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           +TFS++I+ LV A     A  L        C I    + +I     +  +  +A+ + +K
Sbjct: 225 ATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEK 284

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           +   GC PT  +Y  +L  L +  +L+ A    R + + G  P V +   LI  L K   
Sbjct: 285 ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR 344

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           + + A+K+F+EM +RG   D+  Y  LI GL + GKI +A  ++K M +  C P VVT +
Sbjct: 345 SFE-AYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLS 403

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++I+GL ++  +  A+R+F+ M ++G+ PN   YS+L+ GLCK      A+E+L  M   
Sbjct: 404 TMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 463

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P+ +TY+ L++GLCK G ++ A    D M   G KPD   Y  +IS  C  G    A
Sbjct: 464 FCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAA 523

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTY 410
              LD+M     + +R  +S       ++V GLCK+       +      RS   +S T 
Sbjct: 524 CGVLDDM-----SSSRFVYS-------SLVDGLCKSGKLEGGCMLFHEMERSGVANSQTR 571

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           + LI   CK   + ++  + + +  +G +P    ++++++AL    K+ + 
Sbjct: 572 TRLIFHLCKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISALIKSGKVNEG 621



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 187/386 (48%), Gaps = 13/386 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T +L++  L  + +   A D  + V +    ++   F  +  G  +    + A  +  + 
Sbjct: 192 THNLVLHGLCKSGKVLAAMDHFEAV-RRSMPVSAATFSILINGLVKAGMMIQAHSLAQET 250

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC     +Y  ++  L +  +++ A      +   G  P +A+ N L+  LCK  G 
Sbjct: 251 TTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCK-MGR 309

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  + R++ + GCTPD  TY +LI+GL +  + +EA +LFKEM ++  +   V YT+
Sbjct: 310 LEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTA 369

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI GL Q+  + +A  +++ M S G  P+V T S+++DGL K G    A+ + + M ++ 
Sbjct: 370 LIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG 429

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN V YS L++GLCK  K+  A+E+L +MK     PD   Y  +I   C  G  + A 
Sbjct: 430 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 489

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
            F DEM+  G  P+  T+       N ++ GLCK     A    L      +S     YS
Sbjct: 490 AFFDEMLEAGCKPDVYTY-------NILISGLCKAGNTDAACGVLD----DMSSSRFVYS 538

Query: 412 SLITCFCKKGDIHKSARIVDELVLDG 437
           SL+   CK G +     +  E+   G
Sbjct: 539 SLVDGLCKSGKLEGGCMLFHEMERSG 564



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 205/428 (47%), Gaps = 20/428 (4%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   ++  +   K + +A+ + +  TA   NG     +T++ +++ L    +   A DLL
Sbjct: 261 TYTAIVNWLAKNKKIQEAVALMEKITA---NGCTPTIATYNALLNGLCKMGRLEEAIDLL 317

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
            ++    C      + S+  G G+  R  +A ++F +M   G       Y  ++  L++ 
Sbjct: 318 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQT 377

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
            ++  A   Y+ M   G  P V +L+ +I  L K +G + AA +IF+ M  RG  P+   
Sbjct: 378 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK-AGRIGAAVRIFKSMEARGLAPNEVV 436

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y  LI+GLC+  K+  A E+  +M+   C+P  +TY  LI+GLC+S  VE A   F+EM 
Sbjct: 437 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEML 496

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             G +P+V+TY+ L+ GLCK G +  A  +L  M S R       YS+L++GLCK GKL+
Sbjct: 497 EAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSR-----FVYSSLVDGLCKSGKLE 551

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
               +   M+  G+  ++    ++I   C   +  EA +  + +   G+         H 
Sbjct: 552 GGCMLFHEMERSGVA-NSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMP--------HP 602

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
             +N+++  L K+   N    VY  M  R    D +TY++L+        + ++     E
Sbjct: 603 YAYNSIISALIKSGKVNEGQAVYQEM-TRWWKPDRVTYNALLNGMIGANRMDRAHYYYLE 661

Query: 433 LVLDGCLP 440
           +   G +P
Sbjct: 662 MTGRGYVP 669



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 162/317 (51%), Gaps = 11/317 (3%)

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCRLGKIYE 209
            +P V + NVLI   C  +   + AF + REM  + G  P   T+  +++GLC+ GK+  
Sbjct: 150 FRPDVETWNVLITGYCL-AREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLA 208

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A + F+ +  ++   +  T++ LINGL ++  + +A  L +E  + G   ++ TY+++++
Sbjct: 209 AMDHFEAVR-RSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVN 267

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            L K     +A+ L++ + +    P I TY+ LLNGLCK G+L+EA+++L ++   G  P
Sbjct: 268 WLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTP 327

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
           D   Y  +I       +  EA     EM   G+  + + ++  IR       GL +T   
Sbjct: 328 DVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIR-------GLLQTGKI 380

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
            +A  VY +M +     D +T S++I    K G I  + RI   +   G  P+E  +SA+
Sbjct: 381 PQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 440

Query: 449 MTALWDRRKMRQAAELL 465
           +  L   RKM  A E+L
Sbjct: 441 IHGLCKARKMDCALEML 457



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G   D  T S MI  L  A +   A  +   +        E ++ ++  G  +  +  
Sbjct: 392 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 451

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+ +  +MK+  C P   +Y  ++  L +   ++ A  F+  M E G +P V + N+LI
Sbjct: 452 CALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 511

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +G  DAA  +  +M     +   + Y +L++GLC+ GK+     LF EME    
Sbjct: 512 SGLCK-AGNTDAACGVLDDM-----SSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGV 565

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           + +  T T LI  LC++  V+EA+ LF  +R +G+ P+ + Y+S++  L K G  ++   
Sbjct: 566 ANS-QTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQA 623

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           + Q M ++  +P+ VTY+ LLNG+    ++  A      M  +G  P   +  K+
Sbjct: 624 VYQEM-TRWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVPPVSILHKL 677



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 151/320 (47%), Gaps = 49/320 (15%)

Query: 173 DAAFKIFR--EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           D A+++F+    P  G     +T   L++   R  +  EA  L K        P V T+ 
Sbjct: 99  DLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWN 158

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            LI G C ++  EEA  +  EM    GV P++ T++ ++ GLCK G    AM+  + +  
Sbjct: 159 VLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAV-- 216

Query: 290 KRHRP-NIVTYSTLLNGLCKEG-----------------------------------KLQ 313
           +R  P +  T+S L+NGL K G                                   K+Q
Sbjct: 217 RRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQ 276

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EAV +++++   G  P    Y  +++  C +G+ +EA + L ++V  G TP+ +T++   
Sbjct: 277 EAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT--- 333

Query: 374 RIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
               +++ GL K   +  A++++  M +R +++D++ Y++LI    + G I +++ +   
Sbjct: 334 ----SLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKT 389

Query: 433 LVLDGCLPDEGTWSAVMTAL 452
           +   GC+PD  T S ++  L
Sbjct: 390 MTSHGCVPDVVTLSTMIDGL 409



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 10/197 (5%)

Query: 280 AMELLQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           A EL Q + S R   + ++ T + LL+   +  + +EA  +L        +PD   +  +
Sbjct: 101 AWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVL 160

Query: 338 ISCFCDIGKYQEAANFLDEMVLG-GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL 396
           I+ +C   + +EA   + EM    G+ P+       ++ HN V+ GLCK+    A   + 
Sbjct: 161 ITGYCLAREPEEAFAVIREMEEDFGVAPS-------LKTHNLVLHGLCKSGKVLAAMDHF 213

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
               RS+ V + T+S LI    K G + ++  +  E   +GC  D  T++A++  L   +
Sbjct: 214 EAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNK 273

Query: 457 KMRQAAELLLLELMNKC 473
           K+++A  L+     N C
Sbjct: 274 KIQEAVALMEKITANGC 290



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 109/238 (45%), Gaps = 12/238 (5%)

Query: 240 KSVEEAMRLFEEMRSK--GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           K  + A  LF+ + S   G + +V T ++L+D   +     +A  LL+  ++   RP++ 
Sbjct: 96  KDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVE 155

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQ-GLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           T++ L+ G C   + +EA  ++  M+   G+ P    +  ++   C  GK   A +  + 
Sbjct: 156 TWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEA 215

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLIT 415
           +        R +  +     + ++ GL K     +A  +         ++D  TY++++ 
Sbjct: 216 V--------RRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVN 267

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
              K   I ++  +++++  +GC P   T++A++  L    ++ +A +LL   + N C
Sbjct: 268 WLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 325


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 226/499 (45%), Gaps = 72/499 (14%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + + +T++ +I  L  A +   A+   D    E  D+    + ++ +G     R  +A
Sbjct: 329 GCKPNAATYTTIIQGLYDAQRMEEAKAFFD----EALDVIS--YTTVIKGLADSKRIDEA 382

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F+K+K  GC P   +Y  V+  L++  +++   + +  M      P   +  V+I  
Sbjct: 383 CELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDG 442

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK     DA  K+F +M  +GC PD+ TY TLI+G  +  K+ EA++L   M TK   P
Sbjct: 443 LCKAQMLPDAC-KVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEP 501

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T VTY S+++G C+   + EA  +  +MR +G EP +F ++SL+      G + +A ++L
Sbjct: 502 TAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVL 561

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M ++   P+++ Y++L++ L   G++ EA  + D M  +G  PDA  YG II  F  I
Sbjct: 562 TEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKI 621

Query: 345 GKYQEAANFL-----------------------------------DEMVLGGITPNRLTW 369
           G  + A   L                                   D MV  GI PN +T+
Sbjct: 622 GNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTF 681

Query: 370 SLHIR-----------------------------IHNTVVQGLCKTD-PNRAFQVYLSMR 399
           ++ +                               +  ++ GL K    + AF  +  M 
Sbjct: 682 NVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMI 741

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +R I  +  TY+SLI    K G I ++ ++V+++V  G  PD   +SA++T L D   + 
Sbjct: 742 DRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVD 801

Query: 460 QAAELLLLELMNKCVEAEV 478
            A ++    +   C   EV
Sbjct: 802 TAWDVFQEMMKRGCAPNEV 820



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 207/384 (53%), Gaps = 15/384 (3%)

Query: 80  KCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +CD   DI  +  +  G+ R +R  DA+ +F  +  +GC+P   +Y T++  L +  +++
Sbjct: 292 ECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRME 351

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A  F+    +      V S   +IK L  +S  +D A ++F ++   GC+P+   Y  +
Sbjct: 352 EAKAFFDEALD------VISYTTVIKGLA-DSKRIDEACELFEKLKTAGCSPNVVAYTAV 404

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+GL + G+I +  + F++M   +C PT  TYT +I+GLC+++ + +A ++FE+M  KG 
Sbjct: 405 IDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGC 464

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P+  TY++L+DG  K     +A +LL +M++K   P  VTY ++++G CK   + EA E
Sbjct: 465 VPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKE 524

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           ++ +M+ +G +P   ++  ++S +   G+ +EA   L EM   G  P+ + ++  I +  
Sbjct: 525 VIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLF 584

Query: 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           +  +         A  V+ SM  +  + D+LTY ++I  F K G++  +  I++ +   G
Sbjct: 585 STGR------VPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSG 638

Query: 438 CLPDEGTWSAVMTALWDRRKMRQA 461
             PD   ++++M       ++ QA
Sbjct: 639 VGPDCFAYNSLMDGYVKLERVDQA 662



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 195/458 (42%), Gaps = 92/458 (20%)

Query: 100 RPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           R +D A+ +F +M   GCEPT  SY TV++ L   +++  A++F+  M + G +P V + 
Sbjct: 34  RKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAF 93

Query: 159 NVLIKALCK---------------------------------NSGTMDAAFKIFREMPNR 185
             LI   CK                                  +G +D  FKI  EM   
Sbjct: 94  TTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAA 153

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           GC PD+  Y  LI+ LC+LG++ EA ELF+ M    C    VT+ +LI  L     ++EA
Sbjct: 154 GCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEA 213

Query: 246 MRLFEEMRSKGVEPNV-----------------------------------FTYSSLMDG 270
             L+ EM  +G EP +                                     Y+SLMDG
Sbjct: 214 CELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDG 273

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
            CK G     ++LL  M+   + P+I TY+ L+ G  +  +L +A+E+   +   G KP+
Sbjct: 274 YCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPN 333

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDE--------MVLGGITPNR--------------LT 368
           A  Y  II    D  + +EA  F DE         V+ G+  ++                
Sbjct: 334 AATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAG 393

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
            S ++  +  V+ GL K        + +  M   S      TY+ +I   CK   +  + 
Sbjct: 394 CSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDAC 453

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ +++V  GC+PD  T++ ++       KM +A +LL
Sbjct: 454 KVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLL 491



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 155/325 (47%), Gaps = 30/325 (9%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           M+ A    +EM   G  PD      ++NGLC+  KI +A ELF EM +  C PT+V+Y +
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+GL     ++EA + F  M   G EP+V  +++L+ G CK G   Q   +L     KR
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAG-QPQVGHMLLNQALKR 119

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RP++  Y+++++G CK G L    +IL+ M   G  PDA  Y  +I   C +G+  EA 
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAY 179

Query: 352 NFLDEMVLGGITPNRLT----------------------------WSLHIRIHNTVVQGL 383
              + M   G   + +T                            +  ++ + ++++  L
Sbjct: 180 ELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFAL 239

Query: 384 CKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK    + A ++Y ++  + ++   + Y+SL+  +CK G +    +++ ++V     PD 
Sbjct: 240 CKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDI 299

Query: 443 GTWSAVMTALWDRRKMRQAAELLLL 467
            T++ ++       ++  A EL  L
Sbjct: 300 QTYNILVAGFSRANRLDDALELFKL 324



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 163/359 (45%), Gaps = 37/359 (10%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I     A++   A  LLD +  +  + T   + SI  G+ ++    +A  V 
Sbjct: 467 DTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVI 526

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M+E GCEP    + ++L+  + + + + A++    M   G  P V     LI  L  +
Sbjct: 527 AQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLF-S 585

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G +  A  +F  M  +GC PD+ TYGT+I    ++G +  A E+ + M      P    
Sbjct: 586 TGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFA 645

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM-------------------- 268
           Y SL++G  + + V++A  +++ M + G++PN  T++ LM                    
Sbjct: 646 YNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEML 705

Query: 269 ----------------DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
                           DGL K G  S+A    Q MI +   P   TY++L+  L K G++
Sbjct: 706 EKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRI 765

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
            EA ++++ M   G+ PD   Y  +I+   D      A +   EM+  G  PN +T+ +
Sbjct: 766 PEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKV 824



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 3/291 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   D   ++ +I  L S  +   A  + D + ++ C      + +I + + ++    
Sbjct: 566 ARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVE 625

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  + + M + G  P   +Y +++   V+  ++  AF  Y  M   GI+P   + NVL+
Sbjct: 626 AAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLM 685

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDS-YTYGTLINGLCRLGKIYEAKELFKEMETKA 221
             L K+ G  D AF +F+EM  +   P +  +Y  LI+GL + G++ EA   F+EM  + 
Sbjct: 686 HGLFKD-GKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRG 744

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P   TYTSLI  L ++  + EA +L E+M   GV P+V  YS+L+ GL        A 
Sbjct: 745 IIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAW 804

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           ++ Q M+ +   PN VTY  L  G    G+  + +E + +   QG+  +AG
Sbjct: 805 DVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD-LEAVKQHFSQGVAMEAG 854



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 128/264 (48%), Gaps = 5/264 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I    ++ L+ +   V +A  +FDS   +   G   D  T+  +I           A ++
Sbjct: 574 ILYTSLIDLLFSTGRVPEARHVFDSMIEK---GCAPDALTYGTIIQNFSKIGNVEAAGEI 630

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L+ + K         + S+  GY ++ R   A  V+D+M   G +P   ++  ++  L +
Sbjct: 631 LELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFK 690

Query: 133 ENQLKLAFRFYRHMREIG-IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           + +   AF  ++ M E   + P + S  +LI  L K +G +  AF  F+EM +RG  P+ 
Sbjct: 691 DGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGK-AGRVSEAFSQFQEMIDRGIIPEC 749

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           +TY +LI  L + G+I EAK+L ++M     +P V  Y++LI GL  S  V+ A  +F+E
Sbjct: 750 HTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQE 809

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGG 275
           M  +G  PN  TY  L  G    G
Sbjct: 810 MMKRGCAPNEVTYKVLRRGFRAAG 833


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 209/418 (50%), Gaps = 31/418 (7%)

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQL 136
           K+     E  F ++ RG    ++  DA+ +F K+ +E  CEP    Y TV+  L ++   
Sbjct: 135 KKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHT 194

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           + AF   R M +   +P   +  ++I A CK+ G +D A  +  EM  +   PD +TY T
Sbjct: 195 QKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKD-GMLDGATSLLNEMKQKSIPPDIFTYST 253

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           LI+ LC+L +    + LF EM      P V T+ S+I+GLC+   VE+A  +   M  KG
Sbjct: 254 LIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKG 313

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           V+P+V TY+ ++DG    G   +A E+   MI+K   P+I++Y+ L+NG  ++ K+ EA+
Sbjct: 314 VDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAM 373

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW------- 369
           ++   +  +GLKP       ++    ++G+ + A NF DEM+  G  P+  T        
Sbjct: 374 QVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGY 433

Query: 370 ---------------------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
                                  +I+I+  V+ GLCK    ++A   +  +    +  D 
Sbjct: 434 FKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDV 493

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY+++I+ +C++G + ++  ++ ++  +GCL D  T++ ++       K+ +    L
Sbjct: 494 ITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFL 551



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 196/452 (43%), Gaps = 80/452 (17%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK-CDITEDIFLSICR 93
           F      +  G  ++  TF+ +I  L + N+ + A  L  ++ +E  C+  E ++ ++  
Sbjct: 127 FSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMN 186

Query: 94  GY---GRVHRPLDAMRVFDK--------------------------------MKEFGCEP 118
           G    G   +  D +R+ ++                                MK+    P
Sbjct: 187 GLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPP 246

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
              +Y T++  L + +Q +     +  M  + I P V + N +I  LCK  G ++ A +I
Sbjct: 247 DIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCK-EGKVEDAEEI 305

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
            R M  +G  PD  TY  +I+G    G++  A+E+F  M  K+  P +++Y  LING  +
Sbjct: 306 MRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYAR 365

Query: 239 SKSVEEAMRL-----------------------------------FEEMRSKGVEPNVFT 263
            K ++EAM++                                   F+EM S G  P+++T
Sbjct: 366 QKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYT 425

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           + +L+ G  K G   +AM     +  +R   NI  Y+ +++GLCK GKL +A    +++ 
Sbjct: 426 HCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLP 485

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
           L GL PD   Y  +IS +C  G   EA + L +M   G   +        R +N +V+G 
Sbjct: 486 LIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADN-------RTYNVIVRGF 538

Query: 384 CKTDPNRAFQVYL-SMRNRSISVDSLTYSSLI 414
            +++     + +L  +  +S S ++ T   L+
Sbjct: 539 LRSNKVSEMKAFLEEIAGKSFSFEAATVELLM 570



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 169/365 (46%), Gaps = 10/365 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F +M      P+  S+  +L  +V           +R + ++ I      L++++
Sbjct: 55  DAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSIVV 114

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKA 221
            + C    T D  F +      +G   +  T+ TLI GL    K+ +A  LFK++     
Sbjct: 115 NSCCLMHRT-DLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENI 173

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P  V Y +++NGLC+    ++A  L   M     +PN  TY+ ++D  CK G    A 
Sbjct: 174 CEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGAT 233

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL  M  K   P+I TYSTL++ LCK  + +    +   M    + P+   +  +I   
Sbjct: 234 SLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGL 293

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRN 400
           C  GK ++A   +  M+  G+ P+ +T+       N ++ G   +   +RA +++ SM N
Sbjct: 294 CKEGKVEDAEEIMRYMIEKGVDPDVITY-------NMIIDGYGLRGQVDRAREIFDSMIN 346

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +SI  D ++Y+ LI  + ++  I ++ ++  E+   G  P   T + ++  L++  + + 
Sbjct: 347 KSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKS 406

Query: 461 AAELL 465
           A    
Sbjct: 407 AQNFF 411



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 152/335 (45%), Gaps = 44/335 (13%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME-------- 218
           +N   +D AF +FR+M      P   ++  L+  +  +        LF+E+         
Sbjct: 48  QNVKCLDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHE 107

Query: 219 ---------------------------TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
                                       K      VT+T+LI GL     V++A+ LF++
Sbjct: 108 FILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKK 167

Query: 252 M-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           + R    EPN   Y ++M+GLCK G + +A +LL++M     +PN  TY+ +++  CK+G
Sbjct: 168 LVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDG 227

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L  A  +L+ MK + + PD   Y  +I   C + +++       EM+   I PN  T+ 
Sbjct: 228 MLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF- 286

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N+V+ GLCK      A ++   M  + +  D +TY+ +I  +  +G + ++  I
Sbjct: 287 ------NSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREI 340

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D ++     PD  +++ ++     ++K+ +A ++
Sbjct: 341 FDSMINKSIEPDIISYNILINGYARQKKIDEAMQV 375



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 129/276 (46%), Gaps = 10/276 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A  LF++M      P+V +++ L+  +   K     + LF E+    +  + F  S ++
Sbjct: 55  DAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSIVV 114

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL- 327
           +  C    +     +L +   K    N VT++TL+ GL  E K+++AV +  ++  + + 
Sbjct: 115 NSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENIC 174

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           +P+  +YG +++  C  G  Q+A + L  M  G   PN  T+++       V+   CK  
Sbjct: 175 EPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTI-------VIDAFCKDG 227

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A  +   M+ +SI  D  TYS+LI   CK         +  E++     P+  T++
Sbjct: 228 MLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFN 287

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +V+  L    K+  A E++   ++ K V+ +V   N
Sbjct: 288 SVIDGLCKEGKVEDAEEIMRY-MIEKGVDPDVITYN 322



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 125/293 (42%), Gaps = 36/293 (12%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I  L    +   AE+++  + ++  D     +  I  GYG   +   A  +FD M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
                EP   SY  ++     + ++  A +  R + + G++P + + NVL+  L +  G 
Sbjct: 345 INKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE-LGR 403

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTL---------------------------------- 197
             +A   F EM + G  PD YT+ TL                                  
Sbjct: 404 TKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTA 463

Query: 198 -INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
            I+GLC+ GK+ +A   F+++      P V+TYT++I+G CQ   ++EA  +  +M   G
Sbjct: 464 VIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNG 523

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
              +  TY+ ++ G  +    S+    L+ +  K       T   L++ + ++
Sbjct: 524 CLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAED 576



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 1/199 (0%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G   + R   A   FD+M   G  P   ++ T+L    +   ++ A   +  +    
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
               +     +I  LCKN G +D A   F ++P  G  PD  TY  +I+G C+ G + EA
Sbjct: 454 EDTNIQIYTAVIDGLCKN-GKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEA 512

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           K++ ++ME   C     TY  ++ G  +S  V E     EE+  K       T   LMD 
Sbjct: 513 KDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDI 572

Query: 271 LCKGGCSSQAMELLQMMIS 289
           + +    ++ M  +++ I+
Sbjct: 573 IAEDPSITRKMHWIKLHIA 591


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/526 (27%), Positives = 238/526 (45%), Gaps = 68/526 (12%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           ++ T  Q L+LI+   D    L  FD     Y  GF H   +F LM+  L  A     A 
Sbjct: 70  SRTTVLQTLRLIKVPAD---GLRFFDWV---YNKGFSHKEQSFFLMLEFLGRARNLNAAR 123

Query: 71  DLLDRVNKEK---CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           + L  + K       + +  F S+ R YG      +++ +F  MK+ G  P+  ++ ++L
Sbjct: 124 NFLFSIEKRSNGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLL 183

Query: 128 AILVEENQLKLAFRFYRHMREI-GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           +IL++  +  +A   +  MR   G+ P   + N LI   CKNS  +D AF IF+EM    
Sbjct: 184 SILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNS-MVDQAFTIFKEMELYS 242

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS--PTVVTYTSLINGLCQSKSVEE 244
           C PD  TY T+I+GLCR GK+  A  L   M  KA +  P +V+YT+L+ G C  + ++E
Sbjct: 243 CNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDE 302

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGL--------------------------------- 271
           A+ +F EM ++G++PN  TY++L+ GL                                 
Sbjct: 303 ALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILI 362

Query: 272 ---CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV----EILDRMKL 324
              C  G    AM++ Q M++ +  P+  +YS L+  LC   +  +A     E+ ++  L
Sbjct: 363 KAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFNELFEKEVL 422

Query: 325 QG---LKPDAGLYGKIISCFCDIGKYQEAAN-FLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            G    KP A  Y  +    C  GK ++A   F   M  G   P+          + T++
Sbjct: 423 LGKNECKPLAAAYNLMFEYLCANGKAKQAEKVFRQLMKRGAQDPSS---------YRTLI 473

Query: 381 QGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GLC+    + A+++ + M  R    D  TY  LI    K G+   +   +  ++    L
Sbjct: 474 TGLCREGKFKAAYELLVLMLRREFVPDPETYEVLIDGLLKIGEALLAHDTLQRMLRSSYL 533

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQDV 485
           P   T+ +V+  L  +RK    +  LL  ++ K +   +D+  Q V
Sbjct: 534 PVATTFHSVLAELV-KRKFANDSFGLLTVMLEKRIRQNIDLSTQAV 578



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 168/388 (43%), Gaps = 40/388 (10%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ------FRPAEDLLDRVNK 78
           ++++++AL++F         G + +  T++ +I  L  A++      F    D     + 
Sbjct: 297 KQEIDEALLVFHEMLTR---GLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSP 353

Query: 79  EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138
           + C  T +I +      G +     AM+VF +M      P   SY  ++  L   N+   
Sbjct: 354 DAC--TFNILIKAHCDAGHLDA---AMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDK 408

Query: 139 AFRFYRHMREIGI-------QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           A   +  + E  +       +P  A+ N++ + LC N G    A K+FR++  RG   D 
Sbjct: 409 AETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCAN-GKAKQAEKVFRQLMKRGAQ-DP 466

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            +Y TLI GLCR GK   A EL   M  +   P   TY  LI+GL +      A    + 
Sbjct: 467 SSYRTLITGLCREGKFKAAYELLVLMLRREFVPDPETYEVLIDGLLKIGEALLAHDTLQR 526

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M      P   T+ S++  L K   ++ +  LL +M+ KR R NI   +  +  +    +
Sbjct: 527 MLRSSYLPVATTFHSVLAELVKRKFANDSFGLLTVMLEKRIRQNIDLSTQAVRLVFSSAQ 586

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGK---IISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            ++A  I+       L  D G   K   ++   C+  K  +A      +VL  +  +++ 
Sbjct: 587 KEKAFLIVR------LLYDNGYLIKMEELLDFLCENRKLLDA----HTLVLFCLEKSQM- 635

Query: 369 WSLHIRIHNTVVQGLCKTDPN-RAFQVY 395
             + I   NT+++GLCK   +  AF +Y
Sbjct: 636 --VDIDTCNTIIEGLCKHKRHSEAFSLY 661



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 131/333 (39%), Gaps = 62/333 (18%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D++++S++I  L   N+F  AE L + + +++  + ++                      
Sbjct: 389 DSASYSVLIRTLCLRNEFDKAETLFNELFEKEVLLGKN---------------------- 426

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
                  C+P   +Y  +   L    + K A + +R + + G Q   +S   LI  LC+ 
Sbjct: 427 ------ECKPLAAAYNLMFEYLCANGKAKQAEKVFRQLMKRGAQD-PSSYRTLITGLCR- 478

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G   AA+++   M  R   PD  TY  LI+GL ++G+   A +  + M   +  P   T
Sbjct: 479 EGKFKAAYELLVLMLRREFVPDPETYEVLIDGLLKIGEALLAHDTLQRMLRSSYLPVATT 538

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV--------FTYSS-------------- 266
           + S++  L + K   ++  L   M  K +  N+          +SS              
Sbjct: 539 FHSVLAELVKRKFANDSFGLLTVMLEKRIRQNIDLSTQAVRLVFSSAQKEKAFLIVRLLY 598

Query: 267 ----------LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
                     L+D LC+      A  L+   + K    +I T +T++ GLCK  +  EA 
Sbjct: 599 DNGYLIKMEELLDFLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTIIEGLCKHKRHSEAF 658

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
            + + +   G       +  + +     GK++E
Sbjct: 659 SLYNELVELGNHQQLSCHVVLTNALEAAGKWEE 691



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 4/228 (1%)

Query: 48  HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRV 107
            D S++  +I+ L    +F+ A +LL  + + +     + +  +  G  ++   L A   
Sbjct: 464 QDPSSYRTLITGLCREGKFKAAYELLVLMLRREFVPDPETYEVLIDGLLKIGEALLAHDT 523

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
             +M      P   ++ +VLA LV+      +F     M E  I+  +  L+     L  
Sbjct: 524 LQRMLRSSYLPVATTFHSVLAELVKRKFANDSFGLLTVMLEKRIRQNI-DLSTQAVRLVF 582

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           +S   + AF I R + + G          L++ LC   K+ +A  L      K+    + 
Sbjct: 583 SSAQKEKAFLIVRLLYDNGYL---IKMEELLDFLCENRKLLDAHTLVLFCLEKSQMVDID 639

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           T  ++I GLC+ K   EA  L+ E+   G    +  +  L + L   G
Sbjct: 640 TCNTIIEGLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLTNALEAAG 687


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 201/429 (46%), Gaps = 8/429 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   +  T+  +I        F  A  L D + ++K   T  I+  + RG     R  
Sbjct: 186 ARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRIS 245

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +F  M+  G  P   +Y T++    +   +K A   Y+ M   G+ P V +  +LI
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILI 305

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +  M +A K   +M + G  P+ + Y  LI+G C+ G + EA  L  E+E    
Sbjct: 306 DGLCK-TDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEI 364

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TY+ LI GLC    +EEA  L +EM+ KG  PN  TY++L+DG CK G   +A+E
Sbjct: 365 LPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIE 424

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   M  K   PNI+T+STL++G CK GK++ A+ +   M ++GL PD   Y  +I    
Sbjct: 425 VCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHF 484

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHI-------RIHNTVVQGLCKTDPNRAFQVY 395
             G  +EA     EM   G+ PN  T S  I       RI + +   L KT  +      
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKT 544

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             +     S + + Y++LI   C  G I K+++   ++   G  PD  T   ++   +  
Sbjct: 545 NELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRA 604

Query: 456 RKMRQAAEL 464
             +R    L
Sbjct: 605 MHLRDVMML 613



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/375 (30%), Positives = 188/375 (50%), Gaps = 33/375 (8%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           TP  +  ++    E   ++ A   Y  M    + P + + N+++  L K  G  D  +K+
Sbjct: 125 TPNVFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKK-GRFDTMWKV 180

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           + +M  RG +P+  TYGTLI+G CR G   +A  LF EM  K   PTVV YT LI GLC 
Sbjct: 181 YGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCG 240

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
              + EA  +F  MR+ G+ PN++TY+++MDG CK     +A+EL Q M+     PN+VT
Sbjct: 241 ESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVT 300

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           +  L++GLCK  ++  A + L  M   G+ P+  +Y  +I  +C  G   EA +   E+ 
Sbjct: 301 FGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIE 360

Query: 359 LGGITPNRLTWSLHIR----------------------------IHNTVVQGLCKT-DPN 389
              I P+  T+S+ I+                             +NT++ G CK  +  
Sbjct: 361 KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNME 420

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A +V   M  + I  + +T+S+LI  +CK G +  +  +  E+V+ G LPD   ++A++
Sbjct: 421 KAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480

Query: 450 TALWDRRKMRQAAEL 464
              +     ++A  L
Sbjct: 481 DGHFKDGNTKEAFRL 495



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 147/293 (50%), Gaps = 13/293 (4%)

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
           + F +   + +   TP+   +G LI     +G + EA  ++ +M+     P +     ++
Sbjct: 111 SVFNVLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVL 165

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +GL +    +   +++ +M ++G  PNV TY +L+DG C+ G   +A  L   MI K+  
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF 225

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P +V Y+ L+ GLC E ++ EA  +   M+  G+ P+   Y  ++  +C I   ++A   
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALEL 285

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSS 412
             EM+  G+ PN +T+ +       ++ GLCKTD   + + +L  M +  +  +   Y+ 
Sbjct: 286 YQEMLGDGLLPNVVTFGI-------LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNC 338

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           LI  +CK G++ ++  +  E+     LPD  T+S ++  L    +M +A  LL
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 129/271 (47%), Gaps = 16/271 (5%)

Query: 79  EKCDITEDIFLS--ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           EK +I  D+F    + +G   V R  +A  +  +MK+ G  P   +Y T++    +E  +
Sbjct: 360 EKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNM 419

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           + A      M E GI+P + + + LI   CK +G M+AA  ++ EM  +G  PD   Y  
Sbjct: 420 EKAIEVCSQMTEKGIEPNIITFSTLIDGYCK-AGKMEAAMGLYTEMVIKGLLPDVVAYTA 478

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF------- 249
           LI+G  + G   EA  L KEM+     P V T + LI+GLC+   + +A++LF       
Sbjct: 479 LIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD 538

Query: 250 ------EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
                  E+      PN   Y++L+ GLC  G   +A +    M     RP++ T   ++
Sbjct: 539 TTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVII 598

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
            G  +   L++ + +   +   G+ P++ +Y
Sbjct: 599 QGHFRAMHLRDVMMLQADILKMGIIPNSSVY 629



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 14/250 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +  T++ +I           A ++  ++ ++  +     F ++  GY +  +   A
Sbjct: 398 GFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAA 457

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M ++ +M   G  P   +Y  ++    ++   K AFR ++ M+E G+ P V +L+ LI  
Sbjct: 458 MGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDG 517

Query: 165 LCKNSGTMDAAFKIF-------------REMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           LCK+ G +  A K+F              E+    C+P+   Y  LI GLC  G+I++A 
Sbjct: 518 LCKD-GRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKAS 576

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           + F +M      P V T   +I G  ++  + + M L  ++   G+ PN   Y  L  G 
Sbjct: 577 KFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGY 636

Query: 272 CKGGCSSQAM 281
            + G    A+
Sbjct: 637 EESGYLKSAL 646



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 13/220 (5%)

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +   + S    PNVF    L+    + G   +A+ +   M      P +   + +L+GL 
Sbjct: 115 VLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLV 169

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K+G+     ++   M  +G  P+   YG +I   C  G + +A    DEM+   I P  +
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
            +++ IR       GLC ++  + A  ++ +MRN  +  +  TY++++  +CK   + K+
Sbjct: 230 IYTILIR-------GLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
             +  E++ DG LP+  T+  ++  L    +M  A + L+
Sbjct: 283 LELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLI 322


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 210/426 (49%), Gaps = 13/426 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  HD  T +L+++    ++Q   A   L ++ K   +     F S+  G+   +R  +A
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M + ++M E G +P    Y T++  L +   +  A   +  M   GI+P V     L+  
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC NSG    A  + R M  R   PD  T+  LI+   + GK  +A+EL+ EM   + +P
Sbjct: 222 LC-NSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP 280

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            + TYTSLING C    V+EA ++F  M +KG  P+V  Y+SL++G CK      AM++ 
Sbjct: 281 NIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIF 340

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  K    N +TY+TL+ G  + GK   A E+   M  +G+ P+   Y  ++ C C  
Sbjct: 341 YEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYN 400

Query: 345 GKYQEAANFLDEMV---LGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           GK ++A    ++M    + G+ PN   W+     +N ++ GLC      +A  V+  MR 
Sbjct: 401 GKVKKALMIFEDMQKREMDGVAPN--IWT-----YNVLLHGLCYNGKLEKALMVFEDMRK 453

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R + +  +TY+ +I   CK G +  +  +   L   G  P+  T++ +++ L+ R  ++ 
Sbjct: 454 REMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLF-REGLKH 512

Query: 461 AAELLL 466
            A +L 
Sbjct: 513 EAHVLF 518



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 213/401 (53%), Gaps = 20/401 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN----KEKCDITEDIFLSICRGYGRVHR 100
           GF  D  TF+ +I+     N+   A  +++++     K    +   I  S+C+  G V+ 
Sbjct: 137 GFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKN-GHVNY 195

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A+ +FD+M+ +G  P    Y +++  L    + + A    R M +  I+P V + N 
Sbjct: 196 ---ALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI A  K    +DA  +++ EM      P+ +TY +LING C  G + EA+++F  METK
Sbjct: 253 LIDAFVKEGKFLDAE-ELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETK 311

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C P VV YTSLING C+ K V++AM++F EM  KG+  N  TY++L+ G  + G  + A
Sbjct: 312 GCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVA 371

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK---LQGLKPDAGLYGKI 337
            E+   M+S+   PNI TY+ LL+ LC  GK+++A+ I + M+   + G+ P+   Y  +
Sbjct: 372 QEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVL 431

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           +   C  GK ++A    ++M        +    + I  +  ++QG+CK      A  ++ 
Sbjct: 432 LHGLCYNGKLEKALMVFEDM-------RKREMDIGIITYTIIIQGMCKAGKVKNAVNLFC 484

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           S+ ++ +  + +TY+++I+   ++G  H++  +  ++  DG
Sbjct: 485 SLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 177/345 (51%), Gaps = 14/345 (4%)

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           + +Q  LA  F   M ++G +P + +   LI   C  +  M+ A  +  +M   G  PD 
Sbjct: 119 QSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGN-RMEEAMSMVNQMVEMGIKPDV 177

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
             Y T+I+ LC+ G +  A  LF +ME     P VV YTSL+NGLC S    +A  L   
Sbjct: 178 VMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRG 237

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M  + ++P+V T+++L+D   K G    A EL   MI     PNI TY++L+NG C EG 
Sbjct: 238 MTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGC 297

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           + EA ++   M+ +G  PD   Y  +I+ FC   K  +A     EM   G+T N +T++ 
Sbjct: 298 VDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYT- 356

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++QG  +   PN A +V+  M +R +  +  TY+ L+ C C  G + K+  I 
Sbjct: 357 ------TLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIF 410

Query: 431 DELV---LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           +++    +DG  P+  T++ ++  L    K+ +A  L++ E M K
Sbjct: 411 EDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKA--LMVFEDMRK 453



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 9/332 (2%)

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           Q   A   + HM E    P +     L+  + K     D    +   +   G + D YT 
Sbjct: 52  QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMK-KFDVVINLCDHLQIMGVSHDLYTC 110

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
             L+N  C+  + Y A     +M      P +VT+TSLING C    +EEAM +  +M  
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G++P+V  Y++++D LCK G  + A+ L   M +   RP++V Y++L+NGLC  G+ ++
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD 230

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A  +L  M  + +KPD   +  +I  F   GK+ +A    +EM+   I PN  T++    
Sbjct: 231 ADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYT---- 286

Query: 375 IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              +++ G C     + A Q++  M  +    D + Y+SLI  FCK   +  + +I  E+
Sbjct: 287 ---SLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM 343

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              G   +  T++ ++       K   A E+ 
Sbjct: 344 SQKGLTGNTITYTTLIQGFGQVGKPNVAQEVF 375



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 7/339 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           VN AL +FD        G R D   ++ +++ L ++ ++R A+ LL  + K K       
Sbjct: 193 VNYALSLFDQMENY---GIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVIT 249

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F ++   + +  + LDA  ++++M      P   +Y +++     E  +  A + +  M 
Sbjct: 250 FNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLME 309

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G  P V +   LI   CK    +D A KIF EM  +G T ++ TY TLI G  ++GK 
Sbjct: 310 TKGCFPDVVAYTSLINGFCK-CKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK---GVEPNVFTY 264
             A+E+F  M ++   P + TY  L++ LC +  V++A+ +FE+M+ +   GV PN++TY
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTY 428

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + L+ GLC  G   +A+ + + M  +     I+TY+ ++ G+CK GK++ AV +   +  
Sbjct: 429 NVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPS 488

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +G+KP+   Y  +IS     G   EA     +M   G++
Sbjct: 489 KGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 215/409 (52%), Gaps = 17/409 (4%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK-MKEFG 115
           + +L +A      +  L  +       TE   ++    + R   P  A++ F + + + G
Sbjct: 68  VRRLAAAGDVDGVQLELQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLG 127

Query: 116 C-EPT-PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
           C  PT P+ Y  ++  L+ EN +        +MR+ G+QP V + N+L++ALC+N   + 
Sbjct: 128 CARPTAPRLYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNH-RVG 186

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
           AA K+  EM  +GC PD  TYGT+++ LC LG++ EA E+       A  P   +Y ++I
Sbjct: 187 AARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVL-----SAAPPVAASYNAVI 241

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
             LC+   ++E   +  +M  +G++PNV TY+++++  CK G    A  +L  M+     
Sbjct: 242 LALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCT 301

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN+ T++ L+ GL  +G++ +A+++   M  +G  P    Y  +I   C +G  + A++ 
Sbjct: 302 PNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSV 361

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSS 412
           L++M   G  PN  T+S       T++ G  K  D + A  ++  M       + + Y++
Sbjct: 362 LNDMEQHGCFPNARTYS-------TLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTN 414

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           ++  FCKK   +++  ++D+++++ C P+  T++ ++ +L + R++ +A
Sbjct: 415 MVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRA 463



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 202/426 (47%), Gaps = 20/426 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHR 100
           +G + +  T++L++  L   ++   A  +LD +  + C   D+T    +S     GRV  
Sbjct: 163 DGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDE 222

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             + +            P   SY  V+  L  E +++  F     M   G+QP V +   
Sbjct: 223 ATEVLS--------AAPPVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTT 274

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++ A CK +G +  A  I   M   GCTP+  T+  L+ GL   G++++A +++K M  +
Sbjct: 275 IVNAFCK-AGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAE 333

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +P+ V+Y  LI GLC    ++ A  +  +M   G  PN  TYS+L+DG  K G    A
Sbjct: 334 GWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGA 393

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + +   M     +PN+V Y+ ++   CK+    +A  ++D+M ++   P+   +  +I  
Sbjct: 394 ISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRS 453

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMR 399
            C+  +   A     EM   G  PN        R +N ++ GL +  +   A Q+ + M+
Sbjct: 454 LCNCRRVGRALGVFHEMRRHGCPPNG-------RTYNELLHGLFREGNCGDALQMVIEMQ 506

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N  I +  +TY+++++  C+     ++   V  +++ G  PD  T++A++ A     ++R
Sbjct: 507 NHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVR 566

Query: 460 QAAELL 465
            AA +L
Sbjct: 567 MAAWIL 572



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 187/396 (47%), Gaps = 15/396 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRP 101
           G + +  T++ +++    A + R A  +L R+    C      F ++  G    GRVH  
Sbjct: 264 GLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRVH-- 321

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            DA+ ++  M   G  P+  SY  ++  L     LK A      M + G  P   + + L
Sbjct: 322 -DALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTL 380

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I    K +G +D A  I+ +M   GC P+   Y  ++   C+     +A+ L  +M  + 
Sbjct: 381 IDGFSK-AGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVEN 439

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P  VT+ +LI  LC  + V  A+ +F EMR  G  PN  TY+ L+ GL + G    A+
Sbjct: 440 CPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDAL 499

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +++  M +     ++VTY+T+++GLC+    +EA+  + RM ++G++PDA  +  II  +
Sbjct: 500 QMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAY 559

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVY-LSMRN 400
           C  G+ + AA  L  M       N +    +I ++  ++  LC  D      VY L M  
Sbjct: 560 CKEGEVRMAAWILGAM-------NVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLY 612

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
             I  +++T++ L+    +    +  +  +  + +D
Sbjct: 613 EGIYPNTVTWNVLVRGVFRNLGCNNPSDFIQHIAMD 648



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 163/335 (48%), Gaps = 16/335 (4%)

Query: 142 FYRHMREIG-IQPCVASL-NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
           FYR + ++G  +P    L N LI AL + +  + A   +   M   G  P+ +TY  L+ 
Sbjct: 119 FYRAVHDLGCARPTAPRLYNHLIDALLREN-MVGAVALVCGNMRKDGVQPNVFTYNLLVR 177

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
            LC+  ++  A+++  EM TK C P  VTY ++++ LC    V+EA  +          P
Sbjct: 178 ALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLS-----AAPP 232

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
              +Y++++  LC+     +   ++  M+ +  +PN++TY+T++N  CK G+L+ A  IL
Sbjct: 233 VAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAIL 292

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
            RM + G  P+   +  ++    + G+  +A +    MV  G  P+ +++       N +
Sbjct: 293 ARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSY-------NVL 345

Query: 380 VQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           ++GLC   D   A  V   M       ++ TYS+LI  F K GD+  +  I +++   GC
Sbjct: 346 IRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGC 405

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            P+   ++ ++     +    QA  L+   L+  C
Sbjct: 406 KPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENC 440



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 123/255 (48%), Gaps = 5/255 (1%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D++ A+ I++  T    +G + +   ++ M+        F  AE L+D++  E C     
Sbjct: 389 DLDGAISIWNDMTR---SGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTV 445

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            F ++ R      R   A+ VF +M+  GC P  ++Y  +L  L  E     A +    M
Sbjct: 446 TFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEM 505

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +  GI+  + + N ++  LC+     +A F + R M  RG  PD++T+  +I+  C+ G+
Sbjct: 506 QNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGR-MIVRGIQPDAFTFTAIIHAYCKEGE 564

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A  +   M    C   ++ YT L+  LC    +E+AM    +M  +G+ PN  T++ 
Sbjct: 565 VRMAAWILGAMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNV 624

Query: 267 LMDGLCKG-GCSSQA 280
           L+ G+ +  GC++ +
Sbjct: 625 LVRGVFRNLGCNNPS 639


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 192/357 (53%), Gaps = 9/357 (2%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M EFGC P   +Y TV+     E Q++ A+  +  M + GI P V +   +I  LCK +
Sbjct: 151 RMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCK-A 209

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             +D A  +F++M +RG  PD+ TY  LI+G    GK  E  ++ +EM T    P  +TY
Sbjct: 210 QVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITY 269

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             L++ LC++    EA   F+ M  KG++P+V  Y+ L+ G    G  S+    L +M+ 
Sbjct: 270 ALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVG 329

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
               PN   ++ +     K+  ++EA+ I ++M+ QGL PD   +G +I   C +G+  +
Sbjct: 330 NGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDD 389

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A    ++M+  G+TPN       I + +++V GLC      +A +++  + ++ I VD++
Sbjct: 390 AVLQFNQMINEGVTPN-------IFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAV 442

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +++L+   C +G + ++ R++D ++  G  P+  +++ ++       ++ +AA+LL
Sbjct: 443 FFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLL 499



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 189/362 (52%), Gaps = 11/362 (3%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   +Y  ++       +L+  F  +  + + G +  V  ++ L+K LC      +A   
Sbjct: 88  PNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDI 147

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +   M   GC PD   Y T+ING  R G++ +A  LF EM  +   P VVTYT++I+GLC
Sbjct: 148 LLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLC 207

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +++ V+ A  +F++M  +GV+P+  TY+ L+ G    G   + +++L+ M +    P+ +
Sbjct: 208 KAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCI 267

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+ LL+ LCK G+ +EA    D M  +G+KPD  +Y  ++  +   G   E  +FLD M
Sbjct: 268 TYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLM 327

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITC 416
           V  G++PNR       RI N +     K      A  ++  MR + +S D +++ +LI  
Sbjct: 328 VGNGVSPNR-------RIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDA 380

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK--CV 474
            CK G +  +    ++++ +G  P+   +S+++  L    K  +A E L  E++++  CV
Sbjct: 381 LCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEE-LFFEVLDQGICV 439

Query: 475 EA 476
           +A
Sbjct: 440 DA 441



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 208/425 (48%), Gaps = 15/425 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRP 101
           G + DN T++ +I   +S  +++    +L+ ++    +   IT  + L      GR    
Sbjct: 226 GVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCR-- 283

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A   FD M   G +P    Y  +L     +  L     F   M   G+ P     N++
Sbjct: 284 -EARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIM 342

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
             A  K +  ++ A  IF +M  +G +PD  ++G LI+ LC+LG++ +A   F +M  + 
Sbjct: 343 FCAYAKKA-MIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEG 401

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            +P +  ++SL+ GLC     E+A  LF E+  +G+  +   +++LM  LC  G   +A 
Sbjct: 402 VTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQ 461

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            L+ +MI    RPN+++Y+TL+ G C  G++ EA ++LD M   GLKP+   Y  ++  +
Sbjct: 462 RLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGY 521

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C   +  +A +   EM++ G+TP   T+       NT++ GL +T   + A ++YL+M N
Sbjct: 522 CKARRVDDAYSLFREMLMKGVTPVVATY-------NTILHGLFQTGRFSEANELYLNMIN 574

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
                D  TY+ ++   CK   + ++ ++   L       D  T++ ++ AL    +   
Sbjct: 575 SRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKED 634

Query: 461 AAELL 465
           A +L 
Sbjct: 635 AMDLF 639



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 197/411 (47%), Gaps = 11/411 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++L++  L    + R A    D + ++       I+  +  GY      L 
Sbjct: 260 HGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYA-TKGALS 318

Query: 104 AMRVF-DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            M  F D M   G  P  + +  +     ++  ++ A   +  MR+ G+ P V S   LI
Sbjct: 319 EMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALI 378

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            ALCK  G +D A   F +M N G TP+ + + +L+ GLC +GK  +A+ELF E+  +  
Sbjct: 379 DALCK-LGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGI 437

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V + +L+  LC    V EA RL + M   GV PNV +Y++L+ G C  G   +A +
Sbjct: 438 CVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAK 497

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL +M+S   +PN  TY+ LL G CK  ++ +A  +   M ++G+ P    Y  I+    
Sbjct: 498 LLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLF 557

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G++ EA    +E+ L  I          I  +N ++ GLCK +  + AF+++  + ++
Sbjct: 558 QTGRFSEA----NELYLNMINSRT---KCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSK 610

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
              +DS+T++ +I    K G    +  +   +   G +PD  T+  +   L
Sbjct: 611 DPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENL 661



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 210/459 (45%), Gaps = 45/459 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAED-LLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           G+R +    S ++  L  A +   A D LL R+++  C      + ++  G+ R  +   
Sbjct: 120 GWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEK 179

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F +M + G  P   +Y TV+  L +   +  A   ++ M + G++P   + N LI 
Sbjct: 180 AYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIH 239

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
               ++G      ++  EM   G  PD  TY  L++ LC+ G+  EA+  F  M  K   
Sbjct: 240 GYL-STGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIK 298

Query: 224 PTVVTYTSLINGLCQSKS-----------------------------------VEEAMRL 248
           P V  Y  L++G     +                                   +EEAM +
Sbjct: 299 PDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHI 358

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F +MR +G+ P+V ++ +L+D LCK G    A+     MI++   PNI  +S+L+ GLC 
Sbjct: 359 FNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCT 418

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            GK ++A E+   +  QG+  DA  +  ++   C+ G+  EA   +D M+  G+ PN ++
Sbjct: 419 VGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVIS 478

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       NT+V G C T   + A ++   M +  +  +  TY+ L+  +CK   +  + 
Sbjct: 479 Y-------NTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAY 531

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +  E+++ G  P   T++ ++  L+   +  +A EL L
Sbjct: 532 SLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYL 570



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/488 (22%), Positives = 215/488 (44%), Gaps = 46/488 (9%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT A +L  +       +A + FDS    +  G + D + +++++    +          
Sbjct: 267 ITYALLLDYLCKNGRCREARLFFDSM---FRKGIKPDVAIYAILLHGYATKGALSEMHSF 323

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           LD +          IF  +   Y +     +AM +F+KM++ G  P   S+  ++  L +
Sbjct: 324 LDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCK 383

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK------------------------- 167
             ++  A   +  M   G+ P +   + L+  LC                          
Sbjct: 384 LGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVF 443

Query: 168 ---------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
                    N G +  A ++   M   G  P+  +Y TL+ G C  G+I EA +L   M 
Sbjct: 444 FNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMV 503

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +    P   TYT L+ G C+++ V++A  LF EM  KGV P V TY++++ GL + G  S
Sbjct: 504 SNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFS 563

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A EL   MI+ R + +I TY+ +LNGLCK   + EA ++  R+  +  + D+  +  +I
Sbjct: 564 EANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMI 623

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLS 397
                 G+ ++A +    +   G+ P+ +T+ L       + + L +      F  ++ +
Sbjct: 624 GALLKGGRKEDAMDLFATISAYGLVPDVVTYRL-------IAENLIEEGSLGEFDGLFSA 676

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M     + +S   ++L+     +GDI ++   + +L  +     E + ++++ +L+ R +
Sbjct: 677 MEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLD-EKNFSLEASTTSMLISLYSRGE 735

Query: 458 MRQAAELL 465
            +  A+ L
Sbjct: 736 YQPHAKSL 743



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 134/280 (47%), Gaps = 16/280 (5%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQ---SKSVEEAMRLFEEMR---SKGVEPNVF 262
           EA +LF E+   A   +V  +  L+  + +   S + E  + LF  M    S  V PN  
Sbjct: 32  EALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPNAC 91

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDR 321
           TYS L+   C+ G          +++    R N++  S LL GLC   ++ EA +I L R
Sbjct: 92  TYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLR 151

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M   G  PD   Y  +I+ F   G+ ++A N   EM+  GI PN +T++       TV+ 
Sbjct: 152 MSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYT-------TVID 204

Query: 382 GLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLCK    +RA  V+  M +R +  D+ TY+ LI  +   G   +  ++++E+   G  P
Sbjct: 205 GLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEP 264

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
           D  T++ ++  L    + R+ A L    +  K ++ +V I
Sbjct: 265 DCITYALLLDYLCKNGRCRE-ARLFFDSMFRKGIKPDVAI 303


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/454 (29%), Positives = 224/454 (49%), Gaps = 30/454 (6%)

Query: 8   KWSTKITSAQVLQ-LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF 66
           K ST  T  +V   L++ +KD   +L  F+S      N       T S+++  L   ++F
Sbjct: 35  KLSTHFTPFRVNHILLKIQKDHVLSLEFFNSLKT--LNPISLTLETHSIILHILTKKSKF 92

Query: 67  RPAEDLLDRVNKEK------------------CDITEDIFLSICRGYGRVHRPLDAMRVF 108
           + A+ +L  +   +                  CD +  +F S+ + Y  +++  +A  VF
Sbjct: 93  KSAQSILRTLLASRSIDLPGKLFDTLLFSYRMCDSSPRVFDSLFKTYAHMNKFRNATDVF 152

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +MK++G  PT +S    L+ L++ +++ +A  FYR MR   I P   + N+++ ALCK 
Sbjct: 153 SRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCK- 211

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG ++ A ++ REM + G TP+  +Y TLI G C  G +  A +L   M      P VVT
Sbjct: 212 SGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVT 271

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           + SLI+G C+   + EA R F EM+   V PN  TY++L++G  + G S+ A ++ + M+
Sbjct: 272 FNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMM 331

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
               + +I+TY+ L+ GLCKEGK ++A  ++  +  + L P+A  Y  +IS  C      
Sbjct: 332 RNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSD 391

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A      MV  G  PN  T+ +       +     K  D   AF V + M  RS++ DS
Sbjct: 392 RAFQLYKSMVRSGCHPNEQTFKM-------LTSAFVKNEDFEGAFNVLMDMFARSMASDS 444

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
            T   +    C+ G  + + ++  E+     +P+
Sbjct: 445 NTLLEIYDGLCQCGKENLAMKLCHEMEARRLIPE 478



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 154/299 (51%), Gaps = 10/299 (3%)

Query: 169 SGTMDAAFKIFREM--PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           S ++D   K+F  +    R C      + +L      + K   A ++F  M+     PTV
Sbjct: 105 SRSIDLPGKLFDTLLFSYRMCDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTV 164

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            +  + ++ L     V+ A+  + EMR   + PN +T++ ++  LCK G   +A+E+L+ 
Sbjct: 165 ESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLRE 224

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M S    PN+V+Y+TL+ G C +G L  A ++ + M   GL+P+   +  +I  FC  GK
Sbjct: 225 MESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGK 284

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
             EA  F  EM +  +TPN +T+       NT++ G  +  + N A +VY  M    +  
Sbjct: 285 LHEANRFFSEMKVMNVTPNTVTY-------NTLINGYGQVGNSNMAGKVYEEMMRNGVKA 337

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           D LTY++LI   CK+G   K+A +V EL  +  +P+  T+SA+++    R+   +A +L
Sbjct: 338 DILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQL 396


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 216/422 (51%), Gaps = 16/422 (3%)

Query: 36  DSATAEYANGFRHDNS----TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91
           ++A   YA+ +R +      TF++MI+ L    + + A+  L  +       T   + ++
Sbjct: 207 ENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTL 266

Query: 92  CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151
            +G+    R   A  +  +MK  G +P  ++Y  +L+ +  E +   A    R M+EIG+
Sbjct: 267 VQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGL 323

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
            P   S N+LI+  C N+G ++ AF    EM  +G  P  YTY TLI+GL    KI  A+
Sbjct: 324 VPDSVSYNILIRG-CSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAE 382

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
            L +E+  K      VTY  LING CQ    ++A  L +EM + G++P  FTY+SL+  L
Sbjct: 383 ILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVL 442

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
           C+   + +A EL + ++ K  +P++V  +TL++G C  G +  A  +L  M +  + PD 
Sbjct: 443 CRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDD 502

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNR 390
             Y  ++   C  GK++EA   + EM   GI P+ +++       NT++ G  K  D   
Sbjct: 503 VTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISY-------NTLISGYSKKGDTKH 555

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           AF V   M +   +   LTY++L+    K  +   +  ++ E+  +G +P++ ++ +V+ 
Sbjct: 556 AFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIE 615

Query: 451 AL 452
           A+
Sbjct: 616 AM 617



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 183/356 (51%), Gaps = 12/356 (3%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M+ FG +PT  +Y T++       +++ A      M+  G QP + + N ++  +C N G
Sbjct: 251 MEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMC-NEG 309

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
               A ++ REM   G  PDS +Y  LI G    G +  A     EM  +   PT  TY 
Sbjct: 310 R---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYN 366

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LI+GL     +E A  L  E+R KG+  +  TY+ L++G C+ G + +A  L   M++ 
Sbjct: 367 TLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTD 426

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +P   TY++L+  LC++ K +EA E+ +++  +G+KPD  +   ++   C IG    A
Sbjct: 427 GIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRA 486

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
            + L EM +  I P+ +T+       N +++GLC       A ++   M+ R I  D ++
Sbjct: 487 FSLLKEMDMMSINPDDVTY-------NCLMRGLCGEGKFEEARELMGEMKRRGIKPDHIS 539

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y++LI+ + KKGD   +  + DE++  G  P   T++A++  L   ++   A ELL
Sbjct: 540 YNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELL 595



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 161/324 (49%), Gaps = 21/324 (6%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A + F  M  +G  P + T   ++  L RL +I  A   + +M        V T+  
Sbjct: 171 VDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNI 230

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +IN LC+   +++A      M   G++P + TY++L+ G    G    A  ++  M SK 
Sbjct: 231 MINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKG 290

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P++ TY+ +L+ +C EG+   A E+L  MK  GL PD+  Y  +I    + G  + A 
Sbjct: 291 FQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAF 347

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTY 410
            + DEMV  G+ P   T+       NT++ GL   +   A ++ +  +R + I +DS+TY
Sbjct: 348 AYRDEMVKQGMVPTFYTY-------NTLIHGLFMENKIEAAEILIREIREKGIVLDSVTY 400

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL---- 466
           + LI  +C+ GD  K+  + DE++ DG  P + T+++++  L  + K R+A EL      
Sbjct: 401 NILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVG 460

Query: 467 ------LELMNKCVEAEVDIQNQD 484
                 L +MN  ++    I N D
Sbjct: 461 KGMKPDLVMMNTLMDGHCAIGNMD 484



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 157/339 (46%), Gaps = 43/339 (12%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDL--LDRVNKEKCDITEDIFLSICRGYGRVHR 100
           + GF+ D  T++ ++S +   N+ R +E L  +  +      ++ +I +  C   G +  
Sbjct: 288 SKGFQPDMQTYNPILSWM--CNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEM 345

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A    D+M + G  PT  +Y T++  L  EN+++ A    R +RE GI     + N+
Sbjct: 346 ---AFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNI 402

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF------ 214
           LI   C++ G    AF +  EM   G  P  +TY +LI  LCR  K  EA ELF      
Sbjct: 403 LINGYCQH-GDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGK 461

Query: 215 -----------------------------KEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
                                        KEM+  + +P  VTY  L+ GLC     EEA
Sbjct: 462 GMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEA 521

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             L  EM+ +G++P+  +Y++L+ G  K G +  A  +   M+S    P ++TY+ LL G
Sbjct: 522 RELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKG 581

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           L K  + + A E+L  MK +G+ P+   +  +I    ++
Sbjct: 582 LSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNL 620


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 194/377 (51%), Gaps = 30/377 (7%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G+ +  R  +A  +F+ M   G  P   +Y  ++   ++E  ++ A R    M   G++ 
Sbjct: 320 GFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKL 379

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V + N +I  + K +G M  A  +F EM   G  PD++TY  LI+G  +   + +A EL
Sbjct: 380 NVVTYNAMIGGIAK-AGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACEL 438

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
             EM+ +  +P+  TY+ LI+GLC S  +++A  + ++M   GV+PNVF Y +L+    +
Sbjct: 439 LAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQ 498

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                 A+ELL++MI+    P++  Y+ L+ GLC+  K++EA  +L  M  +G+KP+A  
Sbjct: 499 ESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHT 558

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL---------------------- 371
           YG  I+ +   G+ Q A  +  +M+  GI PN + +++                      
Sbjct: 559 YGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCML 618

Query: 372 ------HIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
                  IR ++ ++  L K    + A  V+L      +  D   Y+SLI+ FCK+GDI 
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 425 KSARIVDELVLDGCLPD 441
           K++++ DE++ +G  P+
Sbjct: 679 KASQLYDEMLHNGINPN 695



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 187/368 (50%), Gaps = 10/368 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++ + + +V   +    V  +M E  C+P   +Y   +  L +   +  A    + M 
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMM 303

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G+ P   +  +L+   CK   + +A   IF  MP+ G  P+ +TY  LI+G  + G I
Sbjct: 304 EKGLGPDGHTYTLLVDGFCKQKRSKEAKL-IFESMPSSGLNPNRFTYTALIDGFIKEGNI 362

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  +  EM T+     VVTY ++I G+ ++  + +AM LF EM   G+EP+ +TY+ L
Sbjct: 363 EEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLL 422

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG  K    ++A ELL  M +++  P+  TYS L++GLC    LQ+A E+LD+M   G+
Sbjct: 423 IDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGV 482

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KP+  +YG +I  +    +Y+ A   L  M+  G+ P+   +       N ++ GLC+  
Sbjct: 483 KPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCY-------NCLIIGLCRAK 535

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
               A  + + M  + I  ++ TY + I  + K G+I  + R   +++  G +P+   ++
Sbjct: 536 KVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYT 595

Query: 447 AVMTALWD 454
            ++    D
Sbjct: 596 ILIKGHCD 603



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 223/482 (46%), Gaps = 49/482 (10%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E ++ +AL I D        G + +  T++ MI  +  A +   A  L + +     +  
Sbjct: 359 EGNIEEALRIKDEMITR---GLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPD 415

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              +  +  GY + H    A  +  +MK     P+P +Y  +++ L   + L+ A     
Sbjct: 416 TWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLD 475

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   G++P V     LIKA  + S   + A ++ + M   G  PD + Y  LI GLCR 
Sbjct: 476 QMIRNGVKPNVFMYGTLIKAYVQES-RYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRA 534

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            K+ EAK L  +M  K   P   TY + IN   +S  ++ A R F++M S G+ PN   Y
Sbjct: 535 KKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIY 594

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + L+ G C  G + +A+   + M+ K   P+I  YS +++ L K GK +EA+ +  +   
Sbjct: 595 TILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLK 654

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ--G 382
            G+ PD  LY  +IS FC  G  ++A+   DEM+  GI PN       I ++NT++   G
Sbjct: 655 TGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPN-------IVVYNTLINDYG 707

Query: 383 LCKT-DPNRAFQVYLSMRNRSISVDSLTY------------------------------- 410
            CK+ +   AF+++  M ++ IS D   Y                               
Sbjct: 708 YCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSL 767

Query: 411 ---SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
              +SLI  FCK G + ++  + D++V     P+  T++ ++ A + + +M + AE L L
Sbjct: 768 SAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDA-YGKAEMMEEAEQLFL 826

Query: 468 EL 469
           ++
Sbjct: 827 DM 828



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 194/382 (50%), Gaps = 13/382 (3%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           DIF+   R  G ++   +A  VF      G  PT      ++  L++ N + L ++ Y  
Sbjct: 176 DIFIDKFRVLGFLN---EASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGS 232

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E  I P V +   +IKA CK  G +     +  EM  + C P+ +TY   I GLC+ G
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCK-VGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTG 290

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + EA E+ K M  K   P   TYT L++G C+ K  +EA  +FE M S G+ PN FTY+
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYT 350

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG  K G   +A+ +   MI++  + N+VTY+ ++ G+ K G++ +A+ + + M + 
Sbjct: 351 ALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMA 410

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC- 384
           G++PD   Y  +I  +       +A   L EM    +TP+  T+S+       ++ GLC 
Sbjct: 411 GIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSV-------LISGLCH 463

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
            +D  +A +V   M    +  +   Y +LI  + ++     +  ++  ++ +G LPD   
Sbjct: 464 SSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFC 523

Query: 445 WSAVMTALWDRRKMRQAAELLL 466
           ++ ++  L   +K+ +A  LL+
Sbjct: 524 YNCLIIGLCRAKKVEEAKMLLV 545



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 219/472 (46%), Gaps = 40/472 (8%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+ KA  + D       NG + +   +  +I   V  +++  A +LL  +      +  D
Sbjct: 466 DLQKANEVLDQMIR---NGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIAN--GVLPD 520

Query: 87  IFLSICR--GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           +F   C   G  R  +  +A  +   M E G +P   +Y   + +  +  ++++A R+++
Sbjct: 521 LFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFK 580

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   GI P      +LIK  C    T++A    F+ M  +G  PD   Y  +I+ L + 
Sbjct: 581 DMLSSGIVPNNVIYTILIKGHCDVGNTVEA-LSTFKCMLEKGLIPDIRAYSAIIHSLSKN 639

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           GK  EA  +F +       P V  Y SLI+G C+   +E+A +L++EM   G+ PN+  Y
Sbjct: 640 GKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVY 699

Query: 265 SSLMD--GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           ++L++  G CK G  ++A +L   MISK   P+   Y  L++G  KEG L++A+ +    
Sbjct: 700 NTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEA 759

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS------------ 370
           + + +   +  +  +I  FC  GK  EA    D+MV   +TPN +T++            
Sbjct: 760 QQKSVGSLSA-FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMM 818

Query: 371 -------LHIRIHNTVVQGLCKTD--------PNR--AFQVYLSMRNRSISVDSLTYSSL 413
                  L +   N +   L  T          NR     ++  M  R I+ D++ Y  +
Sbjct: 819 EEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVM 878

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + +CK+G   ++ +++++ +++G   ++  + A++  L   +++    ELL
Sbjct: 879 ASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELL 930



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 153/320 (47%), Gaps = 44/320 (13%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM VF K  + G  P    Y ++++   +E  ++ A + Y  M   GI P +   N LI
Sbjct: 644 EAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLI 703

Query: 163 K--ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING-------------------- 200
                CK SG +  AFK+F EM ++G +PD Y Y  LI+G                    
Sbjct: 704 NDYGYCK-SGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQK 762

Query: 201 --------------LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
                          C+ GK+ EA+ELF +M  K  +P +VTYT LI+   +++ +EEA 
Sbjct: 763 SVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAE 822

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
           +LF +M ++ + PN  TY+SL+    + G   + + L + M ++    + + Y  + +  
Sbjct: 823 QLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAY 882

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CKEGK  EA+++L++  ++G+K +  ++  +I   C   +       L EM        +
Sbjct: 883 CKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEM-------GK 935

Query: 367 LTWSLHIRIHNTVVQGLCKT 386
              SL  +  NT++ G  K+
Sbjct: 936 EELSLSSKTCNTLLLGFYKS 955



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 144/295 (48%), Gaps = 13/295 (4%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D+  + +RE      T     +   I+    LG + EA  +F    ++   PT++   +
Sbjct: 157 LDSLVRCYREFGGSNLT----VFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNN 212

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+  L ++  +    +++  M    + P+V+TY++++   CK G   +   +L  M  K 
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKE 271

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +PN+ TY+  + GLC+ G + EA+E+   M  +GL PD   Y  ++  FC   + +EA 
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
              + M   G+ PNR T++        ++ G  K  +   A ++   M  R + ++ +TY
Sbjct: 332 LIFESMPSSGLNPNRFTYT-------ALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTY 384

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I    K G++ K+  + +E+++ G  PD  T++ ++        M +A ELL
Sbjct: 385 NAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELL 439



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 134/277 (48%), Gaps = 2/277 (0%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           GY +     +A ++FD+M   G  P    Y  ++    +E  L+ A   +   ++  +  
Sbjct: 707 GYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGS 766

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            +++ N LI + CK+   ++A  ++F +M ++  TP+  TY  LI+   +   + EA++L
Sbjct: 767 -LSAFNSLIDSFCKHGKVIEAR-ELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQL 824

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F +MET+   P  +TYTSL+    Q  +  + + LF++M ++G+  +   Y  +    CK
Sbjct: 825 FLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCK 884

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G S +A++LL   + +  +     +  L+  LCKE ++   +E+L  M  + L   +  
Sbjct: 885 EGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKT 944

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
              ++  F   G   EA+  L  M   G  P  L+ +
Sbjct: 945 CNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLT 981


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 199/391 (50%), Gaps = 17/391 (4%)

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+F   ++  GY R  R LDA R    +      P   +Y  ++  L +  ++  A    
Sbjct: 108 DVFAYNTLVAGYCRYGR-LDAARRL--IASMPVPPDAYTYTPIIRGLCDRGRVGDALALL 164

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M + G QP V +  VL++A+CK+SG    A  +  EM  +GCTP+  TY  +ING+CR
Sbjct: 165 DDMLQRGCQPSVVTYTVLLEAVCKSSG-FGEAMNVLDEMRAKGCTPNIVTYNVIINGMCR 223

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G++ +AKE+   + +    P +V+YT+++ GLC ++  ++   LF EM  K   PN  T
Sbjct: 224 EGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT 283

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +  L+   C+GG   +A+++LQ M      PN    + ++N +CK+G++ +A + L+ M 
Sbjct: 284 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 343

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
           + G  PD   Y  ++   C  G+++ A   L EMV     PN +T+       NT +  L
Sbjct: 344 MYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTF-------NTFICIL 396

Query: 384 C-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C K    +A ++   M     SV  +TY++L+  FC +G +  +  + + L    C P+ 
Sbjct: 397 CQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNT 453

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            T++ ++T L    ++  AAELL   +   C
Sbjct: 454 ITYTTLLTGLCHAERLDAAAELLAGMIQKDC 484



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 169/350 (48%), Gaps = 12/350 (3%)

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L+  + L  A R        G  P V     LI+ LC+   T DAA ++ R     G   
Sbjct: 49  LIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAA-RVLRTAEASGAPV 107

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D + Y TL+ G CR G++  A+ L   M      P   TYT +I GLC    V +A+ L 
Sbjct: 108 DVFAYNTLVAGYCRYGRLDAARRLIASMPVP---PDAYTYTPIIRGLCDRGRVGDALALL 164

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           ++M  +G +P+V TY+ L++ +CK     +AM +L  M +K   PNIVTY+ ++NG+C+E
Sbjct: 165 DDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCRE 224

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G++ +A EIL+R+   G +PD   Y  ++   C   ++ +      EMV     PN +T+
Sbjct: 225 GRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTF 284

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
            + +R         C+     RA QV   M     + ++   + +I   CK+G +  +  
Sbjct: 285 DMLVRF-------FCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYD 337

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            ++ + + GC PD  +++ V+  L    +   A ELL   +   C   EV
Sbjct: 338 FLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEV 387



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 174/342 (50%), Gaps = 6/342 (1%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   + +  +++I+ +    +   A D L+ +    C+     + ++ RG  R  R   
Sbjct: 310 HGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEH 369

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +  +M    C P   ++ T + IL ++  ++ A +    M E G    + + N L+ 
Sbjct: 370 AKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVH 429

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C   G +D+A ++F  +P   C P++ TY TL+ GLC   ++  A EL   M  K C 
Sbjct: 430 GFCVQ-GRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCP 485

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              VT+  L++  CQ   VEEAM L  +M   G  PN+ T+++L+DG+ K   S +A+EL
Sbjct: 486 LNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALEL 545

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  ++SK    + +TYS++++ L +E + +EA+++L  ++  G++P  G+Y KI+   C 
Sbjct: 546 LHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCK 605

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
             +  +A +F   MV  G  PN  T+   I I     +GL K
Sbjct: 606 RCETDQAIDFFAYMVSNGCMPNESTYI--ILIEGLAHEGLLK 645



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 225/444 (50%), Gaps = 21/444 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSI-CRGYGRVHR 100
           GF+ D  +++ ++  L +A ++   + L   +  +KC   ++T D+ +   CRG G V R
Sbjct: 241 GFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRG-GMVER 299

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A++V  +M + GC P       V+  + ++ ++  A+ F  +M   G  P   S   
Sbjct: 300 ---AIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTT 356

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +++ LC+ +G  + A ++  EM  + C P+  T+ T I  LC+ G I +A +L + M   
Sbjct: 357 VLRGLCR-AGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEY 415

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            CS  +VTY +L++G C    V+ A+ LF  +     EPN  TY++L+ GLC       A
Sbjct: 416 GCSVGIVTYNALVHGFCVQGRVDSALELFNNLPC---EPNTITYTTLLTGLCHAERLDAA 472

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  MI K    N VT++ L++  C++G ++EA+E++++M   G  P+   +  ++  
Sbjct: 473 AELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDG 532

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMR 399
                  +EA   L  +V  G++ + +T+S       +VV  L + D    A Q+  +++
Sbjct: 533 ITKDCNSEEALELLHGLVSKGVSLDTITYS-------SVVDVLSREDRTEEAIQMLHAVQ 585

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +  +      Y+ ++   CK+ +  ++      +V +GC+P+E T+  ++  L     ++
Sbjct: 586 DMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLK 645

Query: 460 QAAELLLLELMNKCVEAEVDIQNQ 483
           + A  +L EL  K V ++  +++Q
Sbjct: 646 E-ARYVLSELYAKGVLSKSLLEDQ 668


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 198/369 (53%), Gaps = 10/369 (2%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H P   + +  +M+  G  P   +   ++       Q+  +F     + ++G QP    L
Sbjct: 25  HYP-TVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIIL 83

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N L+K LC   G +  +     ++  +G   D  +YG L+NGLC++G+   A +L + +E
Sbjct: 84  NTLMKGLCL-KGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIE 142

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            ++  P VV Y+++I+GLC+ K V+EA  L+ EM ++G+ P+V TY++L+ G C  G   
Sbjct: 143 DRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLM 202

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A  LL  MI K   PNI TY+TL++ LCKEGK++E+  +L  M  +G+KPD  +Y  ++
Sbjct: 203 EAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILM 262

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
             +C +G+ Q+A      MV  G+ P+  ++       N ++ GLCK    + A  +   
Sbjct: 263 DGYCLVGEVQKAKQIFLVMVQTGVNPDVYSY-------NIIINGLCKGKRVDEAMNLLRE 315

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M ++++  D++TYSSLI   CK G I     +  E+   G   +  T+++++  L   + 
Sbjct: 316 MLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQN 375

Query: 458 MRQAAELLL 466
           + +A  L +
Sbjct: 376 LDKAIALFM 384



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 192/378 (50%), Gaps = 30/378 (7%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +  V  K+ + G +P      T++  L  + ++K +  F+  +   G Q    S  +L+ 
Sbjct: 64  SFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLN 123

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G    A K+ R + +R   PD   Y T+I+GLC+   + EA +L+ EM  +   
Sbjct: 124 GLCK-IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIF 182

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+TYT+LI G C +  + EA  L  EM  K + PN++TY++L+D LCK G   ++  L
Sbjct: 183 PDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNL 242

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M  K  +P++V YS L++G C  G++Q+A +I   M   G+ PD   Y  II+  C 
Sbjct: 243 LAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCK 302

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWS---------------------LHIR-------I 375
             +  EA N L EM+   + P+ +T+S                     +H R        
Sbjct: 303 GKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVT 362

Query: 376 HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +N+++ GLCK  + ++A  +++ M+ R I  +  TY++LI   CK G + K   +   L+
Sbjct: 363 YNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLL 422

Query: 435 LDGCLPDEGTWSAVMTAL 452
           + G   D  T++ +++ L
Sbjct: 423 VKGYCIDVWTYTVMISGL 440



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 213/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ +    + ++  L    + + +    D+V  +   + +  +  +  G  ++     A
Sbjct: 75  GYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCA 134

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++   +++    P    Y T++  L ++  +  A+  Y  M   GI P V +   LI  
Sbjct: 135 IKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICG 194

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C  +G +  AF +  EM  +   P+ YTY TLI+ LC+ GK+ E+K L   M  K   P
Sbjct: 195 FCL-AGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKP 253

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV Y+ L++G C    V++A ++F  M   GV P+V++Y+ +++GLCKG    +AM LL
Sbjct: 254 DVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLL 313

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+ K   P+ VTYS+L++GLCK G++   +++   M  +G   +   Y  ++   C  
Sbjct: 314 REMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKN 373

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSI 403
               +A     +M   GI PN+ T++        ++ GLCK    +  Q ++  +  +  
Sbjct: 374 QNLDKAIALFMKMKERGIQPNKYTYT-------ALIDGLCKGGRLKKGQALFQHLLVKGY 426

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            +D  TY+ +I+  CK+G   ++  +  ++  +GC+P+  T+  ++ +L ++ +  +A +
Sbjct: 427 CIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEK 486

Query: 464 LL 465
           LL
Sbjct: 487 LL 488



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 191/352 (54%), Gaps = 13/352 (3%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL----- 89
           +D  +   A G   D  T++ +I     A Q   A  LL+ +  +  +I  +I+      
Sbjct: 170 YDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILK--NINPNIYTYNTLI 227

Query: 90  -SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
            ++C+  G+V    + + V   M + G +P    Y  ++       +++ A + +  M +
Sbjct: 228 DTLCK-EGKVKESKNLLAV---MTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQ 283

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G+ P V S N++I  LCK    +D A  + REM ++   PD+ TY +LI+GLC+LG+I 
Sbjct: 284 TGVNPDVYSYNIIINGLCKGK-RVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRIT 342

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
              +L KEM  +     +VTY SL++GLC+++++++A+ LF +M+ +G++PN +TY++L+
Sbjct: 343 TILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALI 402

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DGLCKGG   +   L Q ++ K +  ++ TY+ +++GLCKEG   EA+ +  +M+  G  
Sbjct: 403 DGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCI 462

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           P+A  +  II    +  +  +A   L EM+  G+ P R   S    + N V+
Sbjct: 463 PNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLPFRNFHSERSSVTNKVI 514



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 168/336 (50%), Gaps = 9/336 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P    +  +L  LV+           + M   GI P + +L++LI   C + G M  +F 
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFC-HLGQMAFSFS 66

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  ++   G  P++    TL+ GLC  G++ ++     ++  +      V+Y  L+NGLC
Sbjct: 67  VLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLC 126

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +      A++L   +  +   P+V  YS+++DGLCK     +A +L   M ++   P+++
Sbjct: 127 KIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVI 186

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+TL+ G C  G+L EA  +L+ M L+ + P+   Y  +I   C  GK +E+ N L  M
Sbjct: 187 TYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVM 246

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
              G+ P+ + +S+       ++ G C   +  +A Q++L M    ++ D  +Y+ +I  
Sbjct: 247 TKKGVKPDVVIYSI-------LMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIING 299

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            CK   + ++  ++ E++    +PD  T+S+++  L
Sbjct: 300 LCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGL 335



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 86/179 (48%), Gaps = 8/179 (4%)

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+  RH P I+ +  +L  L K       + +  +M+ +G+ PD      +I+CFC +G+
Sbjct: 1   MLLLRHIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQ 60

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISV 405
              + + L +++  G  PN +       I NT+++GLC K +  ++   +  +  +   +
Sbjct: 61  MAFSFSVLGKILKLGYQPNTI-------ILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQM 113

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           D ++Y  L+   CK G+   + +++  +      PD   +S ++  L   + + +A +L
Sbjct: 114 DQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDL 172


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/379 (30%), Positives = 194/379 (51%), Gaps = 11/379 (2%)

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+F   ++  G+ +V+R   A +V ++MK  G  P   +Y  ++  L    +L LA +  
Sbjct: 136 DVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVL 195

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             +      P V +  +LI+A     G ++ A K+  EM  RG  PD YTY  +I G+C+
Sbjct: 196 DQLLLDNCMPTVITYTILIEATIVEGG-INEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G +  A EL   + +K C P V++Y  L+         +E  +L  EM S+G EPN  T
Sbjct: 255 EGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 314

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           YS L+  LC+ G   +A+ +L++MI K   P+  +Y  L++ LCKEG+L  A+ I+D M 
Sbjct: 315 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 374

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G  PD   Y  I++  C  G   +A    +++   G  PN       +  +NT++  L
Sbjct: 375 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPN-------VSSYNTMISAL 427

Query: 384 CK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
               D +RA  +  +M ++ +  D +TY+SLI+C C+ G + ++  ++D++   G  P  
Sbjct: 428 WSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTV 487

Query: 443 GTWSAVMTALWDRRKMRQA 461
            +++ V+  L   R++  A
Sbjct: 488 ISYNIVLLGLCKVRRIDDA 506



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 188/376 (50%), Gaps = 15/376 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVH 99
           A GF  D  T+++MI  L +  +   A  +LD++  + C    IT  I +      G ++
Sbjct: 165 ARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGIN 224

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
              +AM++ ++M   G  P   +Y  ++  + +E  ++ A      +   G +P V S N
Sbjct: 225 ---EAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYN 281

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           +L++A   N G  D   K+  EM +RGC P+  TY  LI+ LCR G+I EA  + K M  
Sbjct: 282 ILLRAFL-NQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE 340

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K  +P   +Y  LI+ LC+   ++ A+ + + M S G  P++  Y++++  LCK G ++Q
Sbjct: 341 KELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQ 400

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A+E+   +      PN+ +Y+T+++ L   G    A+ ++  M  +G+ PD   Y  +IS
Sbjct: 401 ALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLIS 460

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
           C C  G  +EA   LD+M   G  P  +++       N V+ GLCK    + A  ++  M
Sbjct: 461 CLCRDGLVEEAIGLLDDMEQSGFRPTVISY-------NIVLLGLCKVRRIDDAIGMFAEM 513

Query: 399 RNRSISVDSLTYSSLI 414
             +    +  TY  LI
Sbjct: 514 IEKGCRPNETTYILLI 529



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 151/278 (54%), Gaps = 8/278 (2%)

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD + Y  +I+G C++ +I  A ++   M+ +   P +VTY  +I  LC  + +  A+++
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            +++      P V TY+ L++     G  ++AM+LL+ M+++   P++ TY+ ++ G+CK
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EG ++ A E++  +  +G KPD   Y  ++  F + GK+ E    + EM   G  PN++T
Sbjct: 255 EGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 314

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +S+       ++  LC+    + A  V   M  + ++ D+ +Y  LI+  CK+G +  + 
Sbjct: 315 YSI-------LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAI 367

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            I+D ++ +GCLPD   ++ ++ AL       QA E+ 
Sbjct: 368 GIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIF 405



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 147/288 (51%), Gaps = 9/288 (3%)

Query: 39  TAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLS-ICRG 94
           T+  + G + D  ++++++   ++  ++   E L+  +    C+   +T  I +S +CR 
Sbjct: 266 TSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCR- 324

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           +GR+   +  ++V   M E    P   SY  +++ L +E +L LA     +M   G  P 
Sbjct: 325 FGRIDEAISVLKV---MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPD 381

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + + N ++ ALCKN G  + A +IF ++   GC P+  +Y T+I+ L   G    A  + 
Sbjct: 382 IVNYNTILAALCKN-GNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMV 440

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
             M +K   P  +TY SLI+ LC+   VEEA+ L ++M   G  P V +Y+ ++ GLCK 
Sbjct: 441 PAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKV 500

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
                A+ +   MI K  RPN  TY  L+ G+   G   EA+E+ + +
Sbjct: 501 RRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSL 548



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 142/270 (52%), Gaps = 9/270 (3%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L+N  C+ GK  E+    + +  K  +P V+  T LI G    K++E+A R+ E + S  
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH- 132

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
            EP+VF Y++++ G CK      A ++L  M ++   P+IVTY+ ++  LC   KL  A+
Sbjct: 133 TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 192

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           ++LD++ L    P    Y  +I      G   EA   L+EM+  G+ P+  T+       
Sbjct: 193 KVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTY------- 245

Query: 377 NTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N +++G+CK     RA ++  S+ ++    D ++Y+ L+  F  +G   +  ++V E+  
Sbjct: 246 NAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFS 305

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            GC P++ T+S ++++L    ++ +A  +L
Sbjct: 306 RGCEPNKVTYSILISSLCRFGRIDEAISVL 335



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 133/255 (52%), Gaps = 13/255 (5%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGY 95
           ++ G   +  T+S++IS L    +   A  +L +V  EK ++T D +       ++C+  
Sbjct: 304 FSRGCEPNKVTYSILISSLCRFGRIDEAISVL-KVMIEK-ELTPDTYSYDPLISALCK-E 360

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           GR+     A+ + D M   GC P   +Y T+LA L +      A   +  +R +G  P V
Sbjct: 361 GRLDL---AIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNV 417

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           +S N +I AL  + G    A  +   M ++G  PD  TY +LI+ LCR G + EA  L  
Sbjct: 418 SSYNTMISALW-SCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLD 476

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           +ME     PTV++Y  ++ GLC+ + +++A+ +F EM  KG  PN  TY  L++G+   G
Sbjct: 477 DMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAG 536

Query: 276 CSSQAMELLQMMISK 290
             ++AMEL   + S+
Sbjct: 537 WRTEAMELANSLFSR 551



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 9/213 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DITE--DIFLSICRGYGRVHRPLDA 104
           D  ++  +IS L    +   A  ++D +    C  DI     I  ++C+  G  ++   A
Sbjct: 346 DTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKN-GNANQ---A 401

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F+K++  GC P   SY T+++ L        A      M   G+ P   + N LI  
Sbjct: 402 LEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISC 461

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC++ G ++ A  +  +M   G  P   +Y  ++ GLC++ +I +A  +F EM  K C P
Sbjct: 462 LCRD-GLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRP 520

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
              TY  LI G+  +    EAM L   + S+ V
Sbjct: 521 NETTYILLIEGIGFAGWRTEAMELANSLFSRDV 553



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 28/158 (17%)

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--------------------- 374
           K+++  C  GK+ E+  FL+ +V  G TP+ +  +  I+                     
Sbjct: 73  KLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH 132

Query: 375 ------IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                  +N V+ G CK +    A QV   M+ R    D +TY+ +I   C +  +  + 
Sbjct: 133 TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 192

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++D+L+LD C+P   T++ ++ A      + +A +LL
Sbjct: 193 KVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLL 230


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 142/541 (26%), Positives = 236/541 (43%), Gaps = 122/541 (22%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDR--------------------VNKEK----- 80
           F  D   ++ MIS L  A+ F  A D L R                    +NKEK     
Sbjct: 38  FVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCK 97

Query: 81  ----------CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEP------------ 118
                     C  +  IF S+   Y R      A ++  KM + GC+P            
Sbjct: 98  RILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGI 157

Query: 119 -------------TPKSYITVLAILVEENQLKL---------------AFRFYRHMREIG 150
                          K+Y  +L   V  N++ +               A+   R M   G
Sbjct: 158 CSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKG 217

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
             P  ++ + +I  LC N+  ++ AF++F+EM   G  PD Y Y TLI+  C+ G I +A
Sbjct: 218 FIPDTSTYSKVIGYLC-NASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQA 276

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           +  F EME   C+P VVTYT+LI+   +S+ V +A  ++E M SKG  PN+ TY++L+DG
Sbjct: 277 RNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDG 336

Query: 271 LCKGGCSSQAMELLQMMISKR-----------------HRPNIVTYSTLLNGLCKEGKLQ 313
           LCK G   +A ++ ++M  +                  + PN+ TY  L++GLCK  +++
Sbjct: 337 LCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVK 396

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL-- 371
           EA ++L  M ++G +P+  +Y  +I   C  GK  EA      M+  G  PN  T+S   
Sbjct: 397 EARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLI 456

Query: 372 --------------------------HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404
                                     ++ I+  ++ GLCK    + A+++ + M  +  +
Sbjct: 457 DRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCN 516

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            + +TY+++I  F K G + K   ++ ++   GC P+  T+  ++        + +A +L
Sbjct: 517 PNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKL 576

Query: 465 L 465
           L
Sbjct: 577 L 577



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 215/454 (47%), Gaps = 83/454 (18%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGYG 96
           + GF  D ST+S +I  L +A++   A  L   + +    I  D+++      S C+  G
Sbjct: 215 SKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRN--GIAPDVYVYTTLIDSFCKA-G 271

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
            + +   A   FD+M+  GC P   +Y  ++   ++  ++  A   Y  M   G  P + 
Sbjct: 272 FIEQ---ARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIV 328

Query: 157 SLNVLIKALCKNSGTMDAAFKIFR-------EMPN--------RGCT--PDSYTYGTLIN 199
           +   LI  LCK +G ++ A +I++       E+P+         G +  P+ +TYG L++
Sbjct: 329 TYTALIDGLCK-AGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVD 387

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           GLC+  ++ EA++L K M  + C P  V Y +LI+G C++  ++EA  +F  M   G +P
Sbjct: 388 GLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDP 447

Query: 260 NVFTYSSLM-----------------------------------DGLCKGGCSSQAMELL 284
           NV+TYSSL+                                   DGLCK G + +A +L+
Sbjct: 448 NVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM 507

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            MM  K   PN+VTY+ +++G  K G++++ +E+L +M  +G  P+   Y  +I+  C  
Sbjct: 508 VMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCST 567

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF--QVYLSM---R 399
           G   EA   L+EM        +  W  H+  +  V++G      NR F   +YLS     
Sbjct: 568 GLLDEAHKLLEEM-------KQTYWPRHVAGYRKVIEGF-----NREFIASLYLSFEISE 615

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           N S+ V  + Y  LI  F K G +  +  + +EL
Sbjct: 616 NDSVPVAPV-YRVLIDNFIKAGRLEIALELNEEL 648



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/516 (24%), Positives = 218/516 (42%), Gaps = 104/516 (20%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+R D  T       L  + ++R A  LL+   KE+      ++  +  G        +A
Sbjct: 5   GYRMDEFTLGCFAHSLCKSGKWREALSLLE---KEEFVPDTVLYTKMISGLCEASLFEEA 61

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M    +M+   C P   +Y  +L   + + +L    R    M   G  P     N L+ A
Sbjct: 62  MDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHA 121

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING------------------------ 200
            C+ SG    A+K+ ++M   GC P    Y  LI G                        
Sbjct: 122 YCR-SGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLE 180

Query: 201 ----------------LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
                           LC +GK  +A  + +EM +K   P   TY+ +I  LC +  VE+
Sbjct: 181 AGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEK 240

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKG----------------GCS----------- 277
           A +LF+EM+  G+ P+V+ Y++L+D  CK                 GC+           
Sbjct: 241 AFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIH 300

Query: 278 --------SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL-- 327
                   S+A E+ +MM+SK   PNIVTY+ L++GLCK GK+++A +I   MK + +  
Sbjct: 301 AYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEI 360

Query: 328 ---------------KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
                          +P+   YG ++   C   + +EA + L  M + G  PN +     
Sbjct: 361 PDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHV----- 415

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
             +++ ++ G CK    + A +V+ +M       +  TYSSLI    K   +  + +++ 
Sbjct: 416 --VYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLS 473

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +++ + C P+   ++ ++  L    K  +A +L+++
Sbjct: 474 KMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVM 509



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 157/323 (48%), Gaps = 17/323 (5%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +L     +LCK SG    A  +  +       PD+  Y  +I+GLC      EA +    
Sbjct: 12  TLGCFAHSLCK-SGKWREALSLLEK---EEFVPDTVLYTKMISGLCEASLFEEAMDFLTR 67

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M   +C P V+TY  L+ G    + +    R+   M ++G  P+   ++SL+   C+ G 
Sbjct: 68  MRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGD 127

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLC-KEGKLQEAVEILDRMKLQGLKPDAGLYG 335
            + A +LL+ M+    +P  V Y+ L+ G+C  E   ++ +++ ++   + L+    L  
Sbjct: 128 YAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNK 187

Query: 336 KIIS----CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NR 390
             IS    C C IGK+++A N + EM+  G  P+  T+S        V+  LC      +
Sbjct: 188 VNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYS-------KVIGYLCNASKVEK 240

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           AFQ++  M+   I+ D   Y++LI  FCK G I ++    DE+  DGC P+  T++A++ 
Sbjct: 241 AFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIH 300

Query: 451 ALWDRRKMRQAAELLLLELMNKC 473
           A    RK+ +A E+  + L   C
Sbjct: 301 AYLKSRKVSKANEVYEMMLSKGC 323



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 154/381 (40%), Gaps = 79/381 (20%)

Query: 15  SAQVLQLIRAEK----DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           ++Q+ ++++ E     DV+    + D A+ E  N F     T+  ++  L  A Q + A 
Sbjct: 346 ASQIYKIMKKENVEIPDVDMHFRVVDGASNE-PNVF-----TYGALVDGLCKAYQVKEAR 399

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           DLL  ++ E C+    ++ ++  G  +  +  +A  VF  M E G +P   +Y +++  L
Sbjct: 400 DLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRL 459

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK----------------------- 167
            ++ +L LA +    M E    P V     +I  LCK                       
Sbjct: 460 FKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNV 519

Query: 168 -----------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
                       SG ++   ++ ++M ++GC P+  TY  LIN  C  G + EA +L +E
Sbjct: 520 VTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEE 579

Query: 217 MET---------------------------------KACSPTVVTYTSLINGLCQSKSVE 243
           M+                                      P    Y  LI+   ++  +E
Sbjct: 580 MKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLE 639

Query: 244 EAMRLFEEMRSKG--VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
            A+ L EE+ S       N   + +L++ L     + +A EL   MIS+   P +     
Sbjct: 640 IALELNEELSSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVH 699

Query: 302 LLNGLCKEGKLQEAVEILDRM 322
           L+ GL +  + +EA+++LD +
Sbjct: 700 LIKGLLRVNRWEEALQLLDSI 720


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 201/383 (52%), Gaps = 18/383 (4%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           KM+  G +P   +   ++    +   +  AF     + ++G +P   +LN LIK LC N 
Sbjct: 87  KMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNG 146

Query: 170 ---------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
                    G +  A  +F +M      PD YT+  L++G C+ G++ EAK +   M  +
Sbjct: 147 KIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQ 206

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P VVTY SL++G    K V +A  +F  M   GV P++ +YS L++G CK     +A
Sbjct: 207 GIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEA 266

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           MELL+ M  K+  PN+VTYS+L++GLCK GK+  A++++D M  +G  P+   Y  I+  
Sbjct: 267 MELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDA 326

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
            C   +   A   L +M   GI PN  T+++       +++GLC++     A +V+  + 
Sbjct: 327 LCKNHQVDNAIALLTQMKNQGIQPNMYTYTI-------LIKGLCQSGKLEDARKVFEDLL 379

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            +  +++  TY+ +I  FC KG   ++  ++ ++  +GC+P+  T+  ++ +L+ ++   
Sbjct: 380 VKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLF-KKDEN 438

Query: 460 QAAELLLLELMNKCVEAEVDIQN 482
           + AE LL E++    +  V + N
Sbjct: 439 EMAEKLLCEMIETNFDGRVALTN 461



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 98/273 (35%), Positives = 151/273 (55%), Gaps = 5/273 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F+KM      P   ++  ++    +E ++K A      M   GI+P V + N L+
Sbjct: 160 DAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLM 219

Query: 163 KA--LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
               L K    ++ A  IF  M   G +PD  +Y  LING C++  + EA EL KEM  K
Sbjct: 220 DGYFLVKQ---VNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHK 276

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P VVTY+SLI+GLC+S  +  A++L +EM  +G  PN+ TYSS++D LCK      A
Sbjct: 277 QIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNA 336

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + LL  M ++  +PN+ TY+ L+ GLC+ GKL++A ++ + + ++G   +   Y  +I  
Sbjct: 337 IALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQG 396

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           FCD G + EA   L +M   G  PN  T+ + I
Sbjct: 397 FCDKGLFDEALTLLSKMEDNGCIPNAKTYEIII 429



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 159/294 (54%), Gaps = 1/294 (0%)

Query: 65  QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124
           + + A DL +++  E  +     F  +  G+ +  R  +A  V   M   G +P   +Y 
Sbjct: 157 KLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYN 216

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
           +++       Q+  A   +  M ++G+ P + S ++LI   CK    MD A ++ +EM +
Sbjct: 217 SLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCK-IKMMDEAMELLKEMHH 275

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           +   P+  TY +LI+GLC+ GKI  A +L  EM  +   P +VTY+S+++ LC++  V+ 
Sbjct: 276 KQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDN 335

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A+ L  +M+++G++PN++TY+ L+ GLC+ G    A ++ + ++ K H  N+ TY+ ++ 
Sbjct: 336 AIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQ 395

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           G C +G   EA+ +L +M+  G  P+A  Y  II       + + A   L EM+
Sbjct: 396 GFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMI 449



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 154/309 (49%), Gaps = 18/309 (5%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N+  +D A  +F  +  +  TP +  +  ++  L +    +    L ++ME +   P +V
Sbjct: 39  NNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLV 98

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG------CS---- 277
               LIN  CQ   +  A  +  ++   G +PN  T ++L+ GLC  G      C     
Sbjct: 99  NCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKL 158

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A++L   MI +   P++ T++ L++G CKEG+++EA  +L  M +QG+KP    Y  +
Sbjct: 159 KDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSL 218

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYL 396
           +  +  + +  +A +  + M   G++P+  ++S+       ++ G CK    + A ++  
Sbjct: 219 MDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSI-------LINGFCKIKMMDEAMELLK 271

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M ++ I  + +TYSSLI   CK G I  + ++VDE+   G  P+  T+S+++ AL    
Sbjct: 272 EMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNH 331

Query: 457 KMRQAAELL 465
           ++  A  LL
Sbjct: 332 QVDNAIALL 340



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 11/239 (4%)

Query: 60  LVSANQFRPAEDLLDRVNKEKC--------DITEDI--FLSICRGYGRVHRPLDAMRVFD 109
           +V+ N       L+ +VNK K          ++ DI  +  +  G+ ++    +AM +  
Sbjct: 212 VVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLK 271

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M      P   +Y +++  L +  ++  A +    M + G  P + + + ++ ALCKN 
Sbjct: 272 EMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNH 331

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             +D A  +  +M N+G  P+ YTY  LI GLC+ GK+ +A+++F+++  K  +  V TY
Sbjct: 332 -QVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTY 390

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           T +I G C     +EA+ L  +M   G  PN  TY  ++  L K   +  A +LL  MI
Sbjct: 391 TVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMI 449



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 4/227 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K VNKA  IF++       G   D  ++S++I+          A +LL  ++ ++     
Sbjct: 226 KQVNKAKSIFNTMAQL---GVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNV 282

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + S+  G  +  +   A+++ D+M + G  P   +Y ++L  L + +Q+  A      
Sbjct: 283 VTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQ 342

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M+  GIQP + +  +LIK LC+ SG ++ A K+F ++  +G   + YTY  +I G C  G
Sbjct: 343 MKNQGIQPNMYTYTILIKGLCQ-SGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKG 401

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
              EA  L  +ME   C P   TY  +I  L +    E A +L  EM
Sbjct: 402 LFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEM 448



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 78/204 (38%), Gaps = 20/204 (9%)

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           S+     Q +I+     N + Y +          + +AV + +R+  Q   P    + KI
Sbjct: 11  SKKFHSFQFLINTHF--NFIPYFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKI 68

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           +        Y        +M   GI PN +         N ++   C+      AF V  
Sbjct: 69  LGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNC-------NILINSFCQLGHIPSAFSVLT 121

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV----------DELVLDGCLPDEGTWS 446
            +       +++T ++LI   C  G IH    IV          ++++L+   PD  T++
Sbjct: 122 KILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFT 181

Query: 447 AVMTALWDRRKMRQAAELLLLELM 470
            ++       ++++A  +L + ++
Sbjct: 182 ILVDGFCKEGRVKEAKNVLAMMMI 205


>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Glycine max]
          Length = 682

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/461 (28%), Positives = 223/461 (48%), Gaps = 32/461 (6%)

Query: 6   MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ 65
           M +    ++  ++L+L++AEK    AL +FD+A      GF   ++ F  ++ + V+A+ 
Sbjct: 1   MVELPKSLSPHRLLKLLKAEKSPLSALNVFDAAVRR--PGFSPSSAVFHHILRR-VAADP 57

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYI 124
                     +    C   ED+ L++ + Y +   P +A+ VF  M   FGC PT +S+ 
Sbjct: 58  GLLLAHAPRIIAAIHCPCPEDVPLTLLKAYAKTRMPNEALHVFQTMPHVFGCSPTIRSFN 117

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
           T+L   VE +Q   A  F+++     + P V + NVL+K +CK  G  +    +   M  
Sbjct: 118 TLLNAFVESHQWARAENFFKYFEAARVSPNVETYNVLMKVMCK-KGEFEKGRGLLTWMWG 176

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
            G +PD  TYGTLI G+ + G +  A E+F EM  +   P VV Y  +I+G  +     +
Sbjct: 177 AGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVK 236

Query: 245 AMRLFEE-MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           A  ++E  +R + V P+V +Y+ ++ GLCK G  S+ +E+ + M     + ++ TYS L+
Sbjct: 237 AGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALI 296

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM------ 357
           +GL + G L  A ++ + M  +G++PD      +++  C  G  +E     +EM      
Sbjct: 297 HGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLR 356

Query: 358 -------VLGGITPN------RLTWSLHIR----IHNTVVQGLCKTD-PNRAFQVYLSMR 399
                   L G+  N       + W   +      +  VV GLC     NRA QV     
Sbjct: 357 NVRSYNIFLKGLFENGKVDDAMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAE 416

Query: 400 NR--SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +R   + VD   YSSLI   CK+G + ++  +V+ +   GC
Sbjct: 417 HREGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGC 457



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 184/408 (45%), Gaps = 48/408 (11%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLI 162
           A+ VFD+M+E G EP    Y  ++    +      A   + R +RE  + P V S NV+I
Sbjct: 202 ALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVSYNVMI 261

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G      +I+  M       D +TY  LI+GL   G +  A+++++EM  +  
Sbjct: 262 SGLCK-CGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGV 320

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEM--------RSKGV----------------- 257
            P VVT  +++NGLC++ +VEE   L+EEM        RS  +                 
Sbjct: 321 RPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLRNVRSYNIFLKGLFENGKVDDAMML 380

Query: 258 -----EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP-----NIVTYSTLLNGLC 307
                E +  TY  ++ GLC  G  ++A+++L+      HR      +   YS+L+N LC
Sbjct: 381 WDGLLEADSATYGVVVHGLCWNGYVNRALQVLE---EAEHREGGMDVDEFAYSSLINALC 437

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           KEG+L EA  +++ M  +G K ++ +   +I  F    K   A     EM   G      
Sbjct: 438 KEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGC----- 492

Query: 368 TWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
             SL +  +N ++ GL + +  R A+     M  +    D +TYS+LI    +   +  +
Sbjct: 493 --SLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAA 550

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            R+  + +  G  PD   ++ V+  L    K+  A +L       KCV
Sbjct: 551 LRLWHQFLDTGHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQKKCV 598



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 145/279 (51%), Gaps = 3/279 (1%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           G V+R L  +   +  +E G +    +Y +++  L +E +L  A      M + G +   
Sbjct: 403 GYVNRALQVLEEAEH-REGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNS 461

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
              NVLI    K+S  +D+A K+FREM  +GC+    +Y  LINGL R  +  EA +   
Sbjct: 462 HVCNVLIDGFVKHS-KLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVN 520

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM  K   P ++TY++LI GL +S  ++ A+RL+ +    G +P++  Y+ ++  LC  G
Sbjct: 521 EMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLCSSG 580

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
               A++L   +  K+   N+VT++T++ G  K G  + A +I   +    L+PD   Y 
Sbjct: 581 KVEDALQLYSTLRQKKC-VNLVTHNTIMEGFYKVGNCEMASKIWAHILEDELQPDIISYN 639

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
             +   C  G+  +A  FLD+ ++ G  P  +TW++ +R
Sbjct: 640 ITLKGLCSCGRVTDAVGFLDDALVRGFLPTAITWNILVR 678



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 157/345 (45%), Gaps = 14/345 (4%)

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           E++ L     F   +R  G  P  A  + +++ +  + G + A         +  C  D 
Sbjct: 20  EKSPLSALNVFDAAVRRPGFSPSSAVFHHILRRVAADPGLLLAHAPRIIAAIHCPCPEDV 79

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
               TL+    +     EA  +F+ M     CSPT+ ++ +L+N   +S     A   F+
Sbjct: 80  PL--TLLKAYAKTRMPNEALHVFQTMPHVFGCSPTIRSFNTLLNAFVESHQWARAENFFK 137

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
              +  V PNV TY+ LM  +CK G   +   LL  M      P+ +TY TL+ G+ K G
Sbjct: 138 YFEAARVSPNVETYNVLMKVMCKKGEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKSG 197

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT-PNRLTW 369
            L  A+E+ D M+ +G++PD   Y  II  F   G + +A    + ++   +  P+ ++ 
Sbjct: 198 DLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVS- 256

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                 +N ++ GLCK    +   +++  M+      D  TYS+LI    + GD+  + +
Sbjct: 257 ------YNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARK 310

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           + +E+V  G  PD  T +A++  L     + +  E  L E M KC
Sbjct: 311 VYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFE--LWEEMGKC 353



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 139/280 (49%), Gaps = 5/280 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           VN+AL + + A      G   D   +S +I+ L    +   A+ +++ +NK  C     +
Sbjct: 405 VNRALQVLEEAEHR-EGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHV 463

Query: 88  FLSICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
              +  G+ + H  LD A++VF +M   GC  T  SY  ++  L+   + + A+     M
Sbjct: 464 CNVLIDGFVK-HSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEM 522

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G +P + + + LI  L + S  MDAA +++ +  + G  PD   Y  +I+ LC  GK
Sbjct: 523 LEKGWKPDIITYSTLIGGLYE-SNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLCSSGK 581

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A +L+  +  K C   +VT+ +++ G  +  + E A +++  +    ++P++ +Y+ 
Sbjct: 582 VEDALQLYSTLRQKKCV-NLVTHNTIMEGFYKVGNCEMASKIWAHILEDELQPDIISYNI 640

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            + GLC  G  + A+  L   + +   P  +T++ L+  +
Sbjct: 641 TLKGLCSCGRVTDAVGFLDDALVRGFLPTAITWNILVRAV 680


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 186/372 (50%), Gaps = 8/372 (2%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPC 154
           G++    +A+ +F  M      P+ K +  +L  +V       A    +HM   +GI+  
Sbjct: 52  GKLKNIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEAD 111

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             +LN++I  LC+    +   F +   M   G  P   T  TLINGLC  G + +A  L 
Sbjct: 112 TITLNIVINCLCRLK-LVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLA 170

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
             ME       V TY  LINGLC++     A+    +M  +  +PNV  YS++MDGLCK 
Sbjct: 171 DHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKD 230

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G  S+A+ L   M  K  RPN+VTY+ L+ GLC  G+ +EA  +LD M   G++PD  + 
Sbjct: 231 GLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQML 290

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV 394
             ++  FC  GK  +A + +  M+L G  P+  T++  I I+        +   N A +V
Sbjct: 291 NILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIY------CLQNKMNEAMRV 344

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           +  M +R    D + ++SLI  +CK  +I+K+  +++E+   G +PD  TW+ ++     
Sbjct: 345 FHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQ 404

Query: 455 RRKMRQAAELLL 466
             +   A EL L
Sbjct: 405 AGRPLAAKELFL 416



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 118/482 (24%), Positives = 212/482 (43%), Gaps = 74/482 (15%)

Query: 53  FSLMISKLVSANQFRPA----EDLLDRVNKEKCDITEDIFLS-ICRGYGRVHRPLDAMRV 107
           F+L++  +V    +  A    + +   +  E   IT +I ++ +CR    +        V
Sbjct: 79  FTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLNIVINCLCR----LKLVAFGFSV 134

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
              M + G EPT  +  T++  L  +  +  A     HM ++     V +  VLI  LCK
Sbjct: 135 LGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCK 194

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
              T+ AA    R+M  R   P+   Y T+++GLC+ G + EA  L  EM  K   P +V
Sbjct: 195 TGDTL-AAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLV 253

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN--------------------------- 260
           TY  LI GLC     +EA  L +EM   G+ P+                           
Sbjct: 254 TYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFM 313

Query: 261 --------VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
                   VFTY+SL+   C     ++AM +  +M+S+   P+IV +++L++G CK+  +
Sbjct: 314 ILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNI 373

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS-- 370
            +A+ +L+ M   G  PD   +  +I  FC  G+   A      M   G  PN  T +  
Sbjct: 374 NKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVI 433

Query: 371 --------------------------LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
                                     L+I I++ ++ G+C     N A++++ S+  + +
Sbjct: 434 LDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGL 493

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            ++   Y+ +I   CK+G + K+  ++  +  +GCLP+  T++  +  L  ++++ ++ +
Sbjct: 494 QINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIK 553

Query: 464 LL 465
            L
Sbjct: 554 YL 555



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 197/428 (46%), Gaps = 15/428 (3%)

Query: 5   TMFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV 61
           TMFK   + T   +  LI     + +V +A+ + D     +   +  D  T+ ++I+ L 
Sbjct: 137 TMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMW---YPLDVYTYGVLINGLC 193

Query: 62  SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
                  A   L ++ +        ++ +I  G  +     +A+ +  +M   G  P   
Sbjct: 194 KTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLV 253

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           +Y  ++  L    + K A      M ++G++P +  LN+L+ A CK    M A   +   
Sbjct: 254 TYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAK-SVIGF 312

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M   G  PD +TY +LI+  C   K+ EA  +F  M ++   P +V +TSLI+G C+ K+
Sbjct: 313 MILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKN 372

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           + +AM L EEM   G  P+V T+++L+ G C+ G    A EL   M      PN+ T + 
Sbjct: 373 INKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAV 432

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           +L+GLCKE  L EAV +   M+   L  +  +Y  ++   C  GK   A      +   G
Sbjct: 433 ILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKG 492

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           +  N       + I+  +++GLCK    ++A  + ++M       ++ TY+  +     K
Sbjct: 493 LQIN-------VYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTK 545

Query: 421 GDIHKSAR 428
            +I +S +
Sbjct: 546 KEIARSIK 553



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 141/332 (42%), Gaps = 36/332 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             G R +  T++ +I  L +  +++ A  LLD + K        +   +   + +  + +
Sbjct: 245 GKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVM 304

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  V   M   G  P   +Y +++ I   +N++  A R +  M   G  P +     LI
Sbjct: 305 QAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLI 364

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF-------- 214
              CK+   ++ A  +  EM   G  PD  T+ TLI G C+ G+   AKELF        
Sbjct: 365 HGWCKDK-NINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQ 423

Query: 215 ---------------------------KEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                                      K ME       +V Y+ L++G+C +  +  A  
Sbjct: 424 VPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWE 483

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           LF  +  KG++ NV+ Y+ ++ GLCK G   +A +LL  M      PN  TY+  + GL 
Sbjct: 484 LFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLL 543

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
            + ++  +++ L  M+ +G   DA     II+
Sbjct: 544 TKKEIARSIKYLTIMRDKGFSVDAATTEFIIN 575



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 123/271 (45%), Gaps = 4/271 (1%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   ++ +   +  +N+A+ +F    +    G   D   F+ +I           A  LL
Sbjct: 324 TYNSLIHIYCLQNKMNEAMRVFHLMVSR---GRLPDIVVFTSLIHGWCKDKNINKAMHLL 380

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           + ++K         + ++  G+ +  RPL A  +F  M ++G  P  ++   +L  L +E
Sbjct: 381 EEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKE 440

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N L  A    + M +  +   +   ++L+  +C ++G ++AA+++F  +P +G   + Y 
Sbjct: 441 NLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMC-SAGKLNAAWELFSSLPGKGLQINVYI 499

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y  +I GLC+ G + +A++L   ME   C P   TY   + GL   K +  +++    MR
Sbjct: 500 YTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMR 559

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            KG   +  T   +++ L      ++  E L
Sbjct: 560 DKGFSVDAATTEFIINYLSTNEGDTKIREFL 590



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 1/220 (0%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F S+  G+ +      AM + ++M + G  P   ++ T++    +  +   A   + +M
Sbjct: 359 VFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNM 418

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            + G  P + +  V++  LCK +  +  A  + + M       +   Y  L++G+C  GK
Sbjct: 419 HKYGQVPNLQTCAVILDGLCKEN-LLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGK 477

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A ELF  +  K     V  YT +I GLC+  S+++A  L   M   G  PN  TY+ 
Sbjct: 478 LNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNV 537

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            + GL      +++++ L +M  K    +  T   ++N L
Sbjct: 538 FVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTEFIINYL 577


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 205/398 (51%), Gaps = 15/398 (3%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPLDAMRVFDKMKEF 114
           I   V AN+   A   L+R+  +   I  ++    C  RGY  +HR  +A+ + + M   
Sbjct: 284 IDVFVRANRLEKALRFLERM--QVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSK 341

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMD 173
           GC P   SY T++  L +E ++       + M +E G+ P   + N LI  L K+    D
Sbjct: 342 GCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHA-D 400

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTVVTYTSL 232
            A    ++   +G   D   Y  +++ LC+ G++ EAK+L  EM +K  C P VVTYT++
Sbjct: 401 EALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAV 460

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           +NG C+   V++A +L + M + G +PN  +Y++L++G+C+ G S +A E++ M      
Sbjct: 461 VNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWW 520

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            PN +TYS +++GL +EGKL EA +++  M L+G  P       ++   C  G+  EA  
Sbjct: 521 SPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARK 580

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
           F++E +  G   N + ++       TV+ G C+ D  + A  V   M   +   D  TY+
Sbjct: 581 FMEECLNKGCAINVVNFT-------TVIHGFCQNDELDAALSVLDDMYLINKHADVFTYT 633

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +L+    KKG I ++  ++ +++  G  P   T+  V+
Sbjct: 634 TLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVI 671



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 237/491 (48%), Gaps = 48/491 (9%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +  +QV  ++R++ D   AL  F  A  ++   +RHD   +  M+  L      + +  +
Sbjct: 172 LKPSQVCAVLRSQDDERVALKFFYWADRQWR--YRHDPMVYYSMLEVLSKTKLCQGSRRV 229

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L  + +     T + F  +   Y R  +  DA++V   M+  G EP      T + + V 
Sbjct: 230 LVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVR 289

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            N+L+ A RF   M+ +GI P V + N +I+  C +   ++ A ++  +M ++GC PD  
Sbjct: 290 ANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYC-DLHRVEEAIELLEDMHSKGCLPDKV 348

Query: 193 TYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLI------------------ 233
           +Y T++  LC+  +I E ++L K+M +     P  VTY +LI                  
Sbjct: 349 SYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKD 408

Query: 234 -----------------NGLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSSLMDGLCKGG 275
                            + LC+   + EA  L  EM SKG   P+V TY+++++G C+ G
Sbjct: 409 AQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLG 468

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A +LLQ+M +  H+PN V+Y+ LLNG+C+ GK  EA E+++  +     P++  Y 
Sbjct: 469 EVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYS 528

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVY 395
            I+      GK  EA + + EMVL G  P  +         N ++Q LC+       + +
Sbjct: 529 VIMHGLRREGKLSEACDVVREMVLKGFFPGPVEI-------NLLLQSLCRDGRTHEARKF 581

Query: 396 LSM-RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           +    N+  +++ + ++++I  FC+  ++  +  ++D++ L     D  T++ ++  L  
Sbjct: 582 MEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGK 641

Query: 455 RRKMRQAAELL 465
           + ++ +A EL+
Sbjct: 642 KGRIAEATELM 652



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 189/386 (48%), Gaps = 11/386 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MI      ++   A +LL+ ++ + C   +  + +I     +  R ++   +  KM
Sbjct: 314 TYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKM 373

Query: 112 -KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
            KE G  P   +Y T++ +L + +    A  F +  +E G +      + ++ ALCK  G
Sbjct: 374 AKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCK-EG 432

Query: 171 TMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
            M  A  +  EM ++G C PD  TY  ++NG CRLG++ +AK+L + M T    P  V+Y
Sbjct: 433 RMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSY 492

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           T+L+NG+C++    EA  +          PN  TYS +M GL + G  S+A ++++ M+ 
Sbjct: 493 TALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVL 552

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   P  V  + LL  LC++G+  EA + ++    +G   +   +  +I  FC   +   
Sbjct: 553 KGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDA 612

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A + LD+M L     +  T++       T+V  L K      A ++   M ++ I    +
Sbjct: 613 ALSVLDDMYLINKHADVFTYT-------TLVDTLGKKGRIAEATELMKKMLHKGIDPTPV 665

Query: 409 TYSSLITCFCKKGDIHKSARIVDELV 434
           TY ++I  +C+ G +     I+++++
Sbjct: 666 TYRTVIHRYCQMGKVDDLVAILEKMI 691



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 158/356 (44%), Gaps = 42/356 (11%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           ++T   ++ ++      ++AL     A  +   GFR D   +S ++  L    +   A+D
Sbjct: 383 QVTYNTLIHMLTKHDHADEALWFLKDAQEK---GFRIDKLGYSAIVHALCKEGRMSEAKD 439

Query: 72  LLDR-VNKEKCDITEDIFLSICRGYGRV-----------------HRP------------ 101
           L++  ++K  C      + ++  G+ R+                 H+P            
Sbjct: 440 LINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGM 499

Query: 102 ------LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
                 L+A  + +  +E    P   +Y  ++  L  E +L  A    R M   G  P  
Sbjct: 500 CRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGP 559

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
             +N+L+++LC++  T +A  K   E  N+GC  +   + T+I+G C+  ++  A  +  
Sbjct: 560 VEINLLLQSLCRDGRTHEAR-KFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLD 618

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           +M        V TYT+L++ L +   + EA  L ++M  KG++P   TY +++   C+ G
Sbjct: 619 DMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMG 678

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
                + +L+ MIS++    I  Y+ ++  LC  GKL+EA  +L ++     + DA
Sbjct: 679 KVDDLVAILEKMISRQKCRTI--YNQVIEKLCVLGKLEEADTLLGKVLRTASRSDA 732


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 226/456 (49%), Gaps = 18/456 (3%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +D N+AL++          GF   + TF+ ++  LV   +   A  + D +      ++ 
Sbjct: 226 RDANRALLVLRKMQDA---GFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSV 282

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +  ++  GY        A+ +F++    G  PT  +Y  ++    EE   + A+   R 
Sbjct: 283 VLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQ 342

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           MR+ G+ P     N++IK L  +    DA   +F+EM + G  PD++TY  LI+ LC+  
Sbjct: 343 MRDHGLLPSTNEFNMVIKGLLNDKLWKDAV-SLFKEMADSG-IPDAFTYNILIHWLCQRR 400

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           KI EA  L+++M      P +VTY SL+   C +  ++EA++L+ EM  KG  PNV TY+
Sbjct: 401 KIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYT 460

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +LM G        +A  LL  M       N  TY+TL+NGLC  G++ E  E+L R + +
Sbjct: 461 TLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETE 520

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G  P A  Y  II+ F   G    A     +M   GI PN +T++       + + G CK
Sbjct: 521 GFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYT-------SFIDGYCK 573

Query: 386 TD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           T   + A ++   +R + +  D   Y+SLI  FC++G++  + +++  ++ DG LP+   
Sbjct: 574 TSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISV 633

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
           +++ +T   + + M +A     L L  K ++  +D+
Sbjct: 634 YNSFITGYKNLKMMEEA-----LRLYEKMIKEGIDL 664



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/477 (26%), Positives = 232/477 (48%), Gaps = 50/477 (10%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +++V KAL IF+    +   G    + T++++I           A +L  ++       +
Sbjct: 295 QREVRKALDIFEETLRD---GLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPS 351

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            + F  + +G        DA+ +F +M + G  P   +Y  ++  L +  +++ A   + 
Sbjct: 352 TNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWE 410

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD-------------- 190
            M E G++P + + + L+   C N G MD A K++ EMP +G TP+              
Sbjct: 411 KMNETGVKPYIVTYHSLLLCYCVN-GCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINK 469

Query: 191 ---------------------SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
                                 YTY TLINGLC +G++ E  E+ K  ET+   PT +TY
Sbjct: 470 AAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTY 529

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            S+ING  ++  +  A  ++++M +KG+ PN+ TY+S +DG CK  C   A+++L  +  
Sbjct: 530 NSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRC 589

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K  RP+I  Y++L+ G C+EG +  A+++L  M   GL P+  +Y   I+ + ++   +E
Sbjct: 590 KGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEE 649

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF--QVYLSMRNRSISVDS 407
           A    ++M+  GI  +  T++       T++ G  K D N  F  ++Y  M  +    D 
Sbjct: 650 ALRLYEKMIKEGIDLDTATYT-------TLIDGFSK-DGNVTFALKLYSEMVAKGNIPDH 701

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +T+++L    C+ GDI  + +++DE+      P+   ++ ++       K+++A  L
Sbjct: 702 ITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRL 758



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 165/329 (50%), Gaps = 1/329 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +  T++ ++   ++   F  A  LL  + +      +  + ++  G   V R  + 
Sbjct: 451 GFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEV 510

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  + +  G  PT  +Y +++   ++   +  AF  Y+ M   GI P + +    I  
Sbjct: 511 GEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDG 570

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK S   D A K+  ++  +G  PD   Y +LI G C+ G +  A ++   M      P
Sbjct: 571 YCKTS-CCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLP 629

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +  Y S I G    K +EEA+RL+E+M  +G++ +  TY++L+DG  K G  + A++L 
Sbjct: 630 NISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLY 689

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M++K + P+ +T++ L +GLC+ G + +A ++LD M    ++P+  +Y  +I+ +   
Sbjct: 690 SEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRN 749

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           GK QEA    DEM+   I P+  T+ + +
Sbjct: 750 GKLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 7/316 (2%)

Query: 28  VNKALVIFDSATAEYA----NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI 83
           +NKA   FD A A  A    NG   ++ T++ +I+ L    +     ++L R   E    
Sbjct: 467 INKA--AFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVP 524

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           T   + SI  G+ +      A  V+ +M   G  P   +Y + +    + +   LA +  
Sbjct: 525 TAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKML 584

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             +R  G++P +A+ N LI   C+  G M  A ++   M   G  P+   Y + I G   
Sbjct: 585 NDVRCKGLRPDIAAYNSLIFGFCQ-EGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKN 643

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
           L  + EA  L+++M  +       TYT+LI+G  +  +V  A++L+ EM +KG  P+  T
Sbjct: 644 LKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHIT 703

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +++L  GLC+ G    A +LL  M     RPN++ Y+ L+NG  + GKLQEA  + D M 
Sbjct: 704 FTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEML 763

Query: 324 LQGLKPDAGLYGKIIS 339
            + + PD   Y  ++ 
Sbjct: 764 ERKIMPDDTTYDILVG 779



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 161/356 (45%), Gaps = 10/356 (2%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M+  G  P  KS   +LA+         A      MR  G +P  A +  ++   C   G
Sbjct: 133 MEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKG-RPLDAWMFDVVMRACFKEG 191

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             D A ++F EMP     PD       I  LC+L     A  + ++M+     P   T+ 
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFN 251

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           S+++ L +   +EEA+ + +E+ + G + +V   ++LM G C      +A+++ +  +  
Sbjct: 252 SVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRD 311

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P  VTY+ L+ G  +EG  ++A E+  +M+  GL P    +  +I    +   +++A
Sbjct: 312 GLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDA 371

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLT 409
            +   EM   GI P+  T+       N ++  LC+    R A  ++  M    +    +T
Sbjct: 372 VSLFKEMADSGI-PDAFTY-------NILIHWLCQRRKIREALNLWEKMNETGVKPYIVT 423

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y SL+ C+C  G + ++ ++  E+   G  P+  T++ +M    ++    +A  LL
Sbjct: 424 YHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALL 479



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 10/159 (6%)

Query: 322 MKLQGLKPDAGLYGKII-SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           M+ +G   DA ++  ++ +CF + G Y +A    DEM    I P++       R+ +  +
Sbjct: 168 MRGKGRPLDAWMFDVVMRACFKE-GMYDDAVRLFDEMPASEIEPDQ-------RVCSVAI 219

Query: 381 QGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LCK  D NRA  V   M++        T++S++    K G + ++  I DEL+  G  
Sbjct: 220 ASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKK 279

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
                 + +M     +R++R+A ++    L +  V  +V
Sbjct: 280 MSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDV 318


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 207/441 (46%), Gaps = 23/441 (5%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG----- 94
           AE   GFR     F  ++  L   N  R A  +++RV         D+ +  C       
Sbjct: 105 AESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSV 164

Query: 95  ---------YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
                    Y +       + VFDKM +    P  K+   +L IL +++ +  A   YR 
Sbjct: 165 KILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRT 224

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E GI+P + + N L+ + CK  G +     +  EM  RGC P+  TY  LINGL + G
Sbjct: 225 MGEFGIKPTIVTYNTLLDSYCK-GGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKG 283

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +  +AK L  EM       +  TY  LI G      + EA+ L EEM  KG  P V TY+
Sbjct: 284 EFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYN 343

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           S + GLCK G  S AM+ L  M++    P++V+Y+TL+ G C+ G L +A  + D ++  
Sbjct: 344 SFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI 403

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            L P    Y  ++   C  G+ + A     EM+  GI P+ +T+++       +V G CK
Sbjct: 404 YLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI-------LVNGSCK 456

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               + A + +  M +  + +DS  Y++ I    K GD  ++  + +E++  G  PD   
Sbjct: 457 MGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLII 516

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           ++ V+  L     + +A+ELL
Sbjct: 517 YNVVVDGLCKLGNLEEASELL 537



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 211/402 (52%), Gaps = 7/402 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           ++ T++++I+ L    +F  A+ L+  + K    ++   +  +  GY       +A+ + 
Sbjct: 268 NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQ 327

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M   G  PT  +Y + +  L +  ++  A +    M    + P V S N LI   C+ 
Sbjct: 328 EEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR- 386

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  AF +F E+ +    P   TY TL++GLCR G++  A++L  EM  +  +P +VT
Sbjct: 387 LGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVT 446

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT L+NG C+  S+  A   F+EM  +G+E + + Y++ + G  K G +S+A  L + M+
Sbjct: 447 YTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEML 506

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +K   P+++ Y+ +++GLCK G L+EA E+L +M   G+ PD   Y  II    + G+ +
Sbjct: 507 AKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLR 566

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL 408
           +      EM+  G+TP+ +T+++ I  H        K    RAF  +  M+ + I  + +
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAG------KGRLERAFIYFSEMQEKGILPNVI 620

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           TY+SLI   CK   + ++     E+V  G  P++ +++ ++ 
Sbjct: 621 TYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILIN 662



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 155/316 (49%), Gaps = 36/316 (11%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  GY R+   + A  +FD+++     PT  +Y T+L  L  + +L++A +    M   
Sbjct: 379 TLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE 438

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT------------- 196
           GI P + +  +L+   CK  G++  A + F EM + G   DSY Y T             
Sbjct: 439 GIAPDIVTYTILVNGSCK-MGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSR 497

Query: 197 ----------------------LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
                                 +++GLC+LG + EA EL ++M +    P  VTYTS+I+
Sbjct: 498 AFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIH 557

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
              ++  + +   +F EM SKG+ P+V TY+ L+ G    G   +A      M  K   P
Sbjct: 558 AHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILP 617

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N++TY++L+NGLCK  ++ +A      M  +G+ P+   Y  +I+  C++G +QEA +  
Sbjct: 618 NVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLY 677

Query: 355 DEMVLGGITPNRLTWS 370
            +M+  G+ P+  T S
Sbjct: 678 KQMLDRGVQPDSCTHS 693



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 103/223 (46%), Gaps = 30/223 (13%)

Query: 245 AMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           A+RLF    S+ G   + F + ++++ L +      A  +++ +I+     N+     +L
Sbjct: 98  ALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINA----NMHRIVDVL 153

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
            G C   ++  +V+ILD +               I  +      ++  +  D+M+   ++
Sbjct: 154 IGGCVSSEV--SVKILDLL---------------IWVYSKKSMVEQCLSVFDKMIKSRLS 196

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           P+       ++  N +++ L   D  ++A +VY +M    I    +TY++L+  +CK G 
Sbjct: 197 PD-------VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +   ++ E+   GC P++ T++ ++  L  + +  QA  L+
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLI 292


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 224/446 (50%), Gaps = 38/446 (8%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRPLDAMRVF 108
           T++++I+ L    +   A  L+DR+   K   +   F  +  GY   G V +   A+++ 
Sbjct: 270 TYNVVINGLARKGELEKAAQLVDRMRMSK-KASAFTFNPLITGYFARGSVEK-AGALQL- 326

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M+  G  PT  +Y T++  +     ++ A   +  MR +G+ P + + N LI   CK 
Sbjct: 327 -EMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCK- 384

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G +  A  +F ++   G  P   TY  L++G CRLG + EA+   +EM  + C P V T
Sbjct: 385 AGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVST 444

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT L+NG  + +++      F+EM SKG++P+ F Y++ +      G +S+A +L ++MI
Sbjct: 445 YTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMI 504

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+    + VTY+  L+GLCK G L++A  +  +M   GL+PD   Y  +I   C+ G+ +
Sbjct: 505 SRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLR 564

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVV 380
           EA +  D M++ G+ P+ +T+++ I                              +N ++
Sbjct: 565 EARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLI 624

Query: 381 QGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LC+    N A+Q +  M  R +S +  TY+ LI   CK+G+  ++ R+  E+   G  
Sbjct: 625 HALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIH 684

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           PD  T +A+    +D  + + A + +
Sbjct: 685 PDHCTHNALFKG-FDEGQSKHAIQYM 709



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 196/397 (49%), Gaps = 43/397 (10%)

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +  F +M   G  P  K    VL  L +E +       Y  M ++GI+P + + N L+ +
Sbjct: 181 LAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDS 240

Query: 165 LCKNSGTMDAAFKIFREMPNR--GCTPDSYTYGTLINGLCRLGKIYEAKELFK------- 215
             +  G +D A K+ REM  R  GC P   TY  +INGL R G++ +A +L         
Sbjct: 241 FFRE-GRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKK 299

Query: 216 ---------------------------EMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
                                      EME +   PTVVTY ++I+G+ +S +VE A   
Sbjct: 300 ASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMK 359

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EMR+ G+ P++ TY+SL++G CK G   +A+ L   +      P+++TY+ LL+G C+
Sbjct: 360 FVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCR 419

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G L+EA      M  QG +PD   Y  +++    +        F DEM+  G+ P+   
Sbjct: 420 LGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPD--C 477

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           ++ + RI   ++ G      + AFQ+   M +R IS D++TY+  +   CK G++  +  
Sbjct: 478 FAYNTRISAELILG----STSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYV 533

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  ++V DG  PD  T++ ++ A  +R ++R+A ++ 
Sbjct: 534 LWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIF 570



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 190/396 (47%), Gaps = 44/396 (11%)

Query: 103 DAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM--REIGIQPCVASLN 159
           D MR V+ +M + G EP+  +Y T+L     E ++  A +  R M  R  G  P   + N
Sbjct: 213 DDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYN 272

Query: 160 VLIKALCKNS---------------------------------GTMDAAFKIFREMPNRG 186
           V+I  L +                                   G+++ A  +  EM N G
Sbjct: 273 VVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEG 332

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             P   TY T+I+G+ R G +  A+  F EM      P ++TY SLING C++ +++EA+
Sbjct: 333 IVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEAL 392

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            LF +++  G+ P+V TY+ L+DG C+ G   +A    Q M+ +  +P++ TY+ L+NG 
Sbjct: 393 WLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGS 452

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
            K   L    E  D M  +GL+PD   Y   IS    +G   EA    + M+  GI+ + 
Sbjct: 453 RKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDT 512

Query: 367 LTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           +T+       N  + GLCK+ +   A+ +++ M +  +  D +TY+ LI   C++G + +
Sbjct: 513 VTY-------NIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLRE 565

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +  I D +++ G  P   T++  + A   R  +  A
Sbjct: 566 ARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSA 601



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 162/354 (45%), Gaps = 14/354 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDL---LDRVNKEKCDITEDIFLSICRGYGRVH 99
           A G   D  T++ +I+    A   + A  L   L R       +T +I L    GY R+ 
Sbjct: 365 AMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLD---GYCRLG 421

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
              +A R   +M E GC+P   +Y  ++    +   L +   F+  M   G+QP   + N
Sbjct: 422 DLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYN 481

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
             I A     G+   AF++   M +RG + D+ TY   ++GLC+ G + +A  L+ +M +
Sbjct: 482 TRISAELI-LGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVS 540

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
               P  +TYT LI+  C+   + EA  +F+ M   G+ P+  TY+  +   C+ G    
Sbjct: 541 DGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYS 600

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A    Q M+ +  RPN VTY+ L++ LC+ G+   A +    M  +GL P+   Y  +I 
Sbjct: 601 AYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLID 660

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ 393
             C  G ++EA     EM   GI P+  T       HN + +G  +     A Q
Sbjct: 661 GNCKEGNWEEAIRLYSEMHQHGIHPDHCT-------HNALFKGFDEGQSKHAIQ 707



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL--DGCLPDEGTWSAVMTA 451
           VY  M    I    +TY++L+  F ++G + ++A+++ E+     GCLP + T++ V+  
Sbjct: 218 VYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVING 277

Query: 452 LWDRRKMRQAAELLLLELMNKCVEA 476
           L  + ++ +AA+L+    M+K   A
Sbjct: 278 LARKGELEKAAQLVDRMRMSKKASA 302


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 189/354 (53%), Gaps = 11/354 (3%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           G +P   +Y T++  L +  +   A   ++ M E G QP V + + +I +LCK+   ++ 
Sbjct: 5   GYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDR-RVNE 63

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A  IF  M  +G +P+ +TY +LI GLC   +  EA  +  EM +    P +VT++ LIN
Sbjct: 64  ALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 123

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
             C+  +V EA  + + M   GVEPNV TYSSLM+G        +A +L  +MI+K  +P
Sbjct: 124 IFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKP 183

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++ +Y+ L+NG CK  ++ EA ++ + M  QGL PD   Y  +I   C +G+ +EA +  
Sbjct: 184 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLF 243

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
             M+  G  P+  T+S+       ++ G CK     +AF+++ +M++  +  + + Y+ L
Sbjct: 244 KNMLTNGNLPDLCTYSI-------LLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNIL 296

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           I   CK  ++ ++ ++  EL + G  P+   W   +  +W R    +   L++L
Sbjct: 297 IDAMCKSRNLKEARKLFSELFVQGLQPNMKHWK--LFEIWKRMAALRMNFLIML 348



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 171/329 (51%), Gaps = 1/329 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G++ D  T++ +I+ L    +   A  L  ++ +  C      + +I     +  R  
Sbjct: 3   ARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVN 62

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +F  MK  G  P   +Y +++  L   ++ + A      M  + I P + + ++LI
Sbjct: 63  EALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI 122

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK     +A   + + M   G  P+  TY +L+NG     +++EA++LF  M TK C
Sbjct: 123 NIFCKEGNVFEAR-GVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGC 181

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V +Y  LING C++K + EA +LF EM  +G+ P++ +Y++L+DGLC+ G   +A +
Sbjct: 182 KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHD 241

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M++  + P++ TYS LL+G CK+G L +A  +   M+   LKP+  +Y  +I   C
Sbjct: 242 LFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMC 301

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSL 371
                +EA     E+ + G+ PN   W L
Sbjct: 302 KSRNLKEARKLFSELFVQGLQPNMKHWKL 330



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 160/285 (56%), Gaps = 8/285 (2%)

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  RG  PD +TY T+INGLC++G+   A  LFK+M    C P VVTY+++I+ LC+ + 
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V EA+ +F  M++KG+ PN+FTY+SL+ GLC      +A  +L  M+S    PNIVT+S 
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L+N  CKEG + EA  +L  M   G++P+   Y  +++ +    +  EA    D M+  G
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
             P+  ++       N ++ G CK      A Q++  M ++ ++ D ++Y++LI   C+ 
Sbjct: 181 CKPDVFSY-------NILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQL 233

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G + ++  +   ++ +G LPD  T+S ++     +  + +A  L 
Sbjct: 234 GRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLF 278



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 161/299 (53%), Gaps = 8/299 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + +I  G  ++   + A  +F KM E GC+P   +Y T++  L ++ ++  A   + +M+
Sbjct: 13  YTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMK 72

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             GI P + + N LI+ LC  S   +A+  +  EM +    P+  T+  LIN  C+ G +
Sbjct: 73  AKGISPNIFTYNSLIQGLCNFSRWREAS-AMLNEMMSLNIMPNIVTFSLLINIFCKEGNV 131

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           +EA+ + K M      P VVTY+SL+NG      V EA +LF+ M +KG +P+VF+Y+ L
Sbjct: 132 FEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNIL 191

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++G CK     +A +L   MI +   P+IV+Y+TL++GLC+ G+L+EA ++   M   G 
Sbjct: 192 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN 251

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
            PD   Y  ++  FC  G   +A      M    + PN +       ++N ++  +CK+
Sbjct: 252 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMV-------MYNILIDAMCKS 303



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 8/188 (4%)

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+++ ++P++ TY+T++NGLCK G+   A  +  +M   G +PD   Y  II   C   +
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISV 405
             EA +    M   GI+PN  T+       N+++QGLC     R     L+ M + +I  
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTY-------NSLIQGLCNFSRWREASAMLNEMMSLNIMP 113

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +T+S LI  FCK+G++ ++  ++  +   G  P+  T+S++M     + ++ +A +L 
Sbjct: 114 NIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLF 173

Query: 466 LLELMNKC 473
            + +   C
Sbjct: 174 DVMITKGC 181


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 188/364 (51%), Gaps = 19/364 (5%)

Query: 122 SYITVLAILVEENQLKLAF---RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           SY TVLA L  +  L  A    R   H   +  +P   S   L++ALC +     A   +
Sbjct: 58  SYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQA-VGL 116

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
            R M + G  PD  TYGTLI GLC    +  A EL  EM      P VV Y+ L++G C+
Sbjct: 117 LRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCK 176

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +   E   ++FEEM  +G+EP+V  Y++L+D LC+ G   +A  ++ MM  +   PN+VT
Sbjct: 177 TGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVT 236

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y+ L+N +CKEG ++EA+++   M  +G++PD   Y  +I+    + +  EA   L+EM+
Sbjct: 237 YNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMM 296

Query: 359 LGG--ITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLIT 415
            G   + P+ +T+       N+V+ GLCK    R A QV   M       + + ++ LI 
Sbjct: 297 QGETRVRPDLMTF-------NSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIG 349

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA--AELLLLELMNKC 473
              +   + K+  ++DE+   G  PD  T+S ++       KMRQ   AE  L E+ ++ 
Sbjct: 350 GLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFC---KMRQVERAESYLSEMRHQG 406

Query: 474 VEAE 477
           +E E
Sbjct: 407 MEPE 410



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 207/409 (50%), Gaps = 14/409 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  T+  +I  L  A     A +LL+ + +   +    ++  +  GY +  R    
Sbjct: 124 GVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESV 183

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            +VF++M   G EP    Y  ++  L    ++K A R    M E G++P V + NVLI +
Sbjct: 184 GKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINS 243

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM---ETKA 221
           +CK  G++  A  + + M  +G  PD  TY TLI GL  + ++ EA  L +EM   ET+ 
Sbjct: 244 MCKE-GSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRV 302

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P ++T+ S+I+GLC+   + +A+++   M   G   N+  ++ L+ GL +     +AM
Sbjct: 303 -RPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAM 361

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           EL+  M S   +P+  TYS L+NG CK  +++ A   L  M+ QG++P+   Y  ++   
Sbjct: 362 ELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAM 421

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRN 400
           CD G   +A +  +EM       +R    L    ++T++ G  K+   +  + +L  M +
Sbjct: 422 CDQGMMGQARDLFNEM-------DR-NCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMID 473

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
             +  D++TYS  I  F K GD+  + R++ ++   G +PD   + +++
Sbjct: 474 EGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLI 522



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 37/247 (14%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG R +   F+L+I  L+  ++ + A +L+D +           +  +  G+ ++ +   
Sbjct: 335 NGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVER 394

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A     +M+  G EP P  YI                                    L+K
Sbjct: 395 AESYLSEMRHQGMEPEPVHYIP-----------------------------------LLK 419

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A+C + G M  A  +F EM +R C  D+  Y T+I+G  + G+   A+E  K+M  +   
Sbjct: 420 AMC-DQGMMGQARDLFNEM-DRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLI 477

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY+  IN   +S  +  A R+ ++M + G  P+V  + SL+ G    G + + +EL
Sbjct: 478 PDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILEL 537

Query: 284 LQMMISK 290
            + M +K
Sbjct: 538 TREMTAK 544



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 46/209 (22%)

Query: 295 NIVTYSTLLNGLCKEG--------------------------------------KLQEAV 316
           + V+Y+T+L  LC++G                                      +  +AV
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            +L  M+  G++PD   YG +I   CD      A   L+EM   GI PN       + ++
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPN-------VVVY 167

Query: 377 NTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           + ++ G CKT    +  +V+  M  R I  D + Y++LI   C+ G + K+AR++D +  
Sbjct: 168 SCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTE 227

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            G  P+  T++ ++ ++     +R+A +L
Sbjct: 228 RGLEPNVVTYNVLINSMCKEGSVREALDL 256


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 202/400 (50%), Gaps = 21/400 (5%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPLDAMRVFDKMKEF 114
           I  LV AN    A   L+R+  +   I  ++    C  +GY  +HR  DAM +  +M   
Sbjct: 160 IHVLVMANMLEKALRFLERM--QLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLK 217

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           GC P   SY TV+  L +  +++        M +  +     + N LI  LCK+    D 
Sbjct: 218 GCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHA-DE 276

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A +  RE   RG   D   Y  +++  C+ G++ +AKE+  EM T+ C P VVTYT++IN
Sbjct: 277 ALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIIN 336

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G  Q+  V +A ++ ++M   G +PN  +Y++ + GLC+ G SS+A E+++    +   P
Sbjct: 337 GFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTP 396

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N +TYS +++G  +EGKL +A +++  M  +G  P       ++   C IG+  EA  F+
Sbjct: 397 NAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFM 456

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF-----QVYLSMRNRSISVDSLT 409
           +E +  G   N + ++       TV+   C+ D   A       +YLS ++     D++T
Sbjct: 457 EECLNMGCAVNAVNFT-------TVIHRFCQQDDIEAALSLLDDMYLSNKH----PDAVT 505

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           Y+++I    KKG I ++  +  +++  G  P   T+  V+
Sbjct: 506 YTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVI 545



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 221/452 (48%), Gaps = 34/452 (7%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           +RHD   + +M+  L      + A  +L  + +     T   F  +   Y R  +  +AM
Sbjct: 79  YRHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAM 138

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           +V   M++ G EP      T + +LV  N L+ A RF   M+ +GI P V + N LIK  
Sbjct: 139 QVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGY 198

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C +   ++ A ++  EMP +GC+PD  +Y T++  LC+  +I E  ++ ++ME       
Sbjct: 199 C-DLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLAD 257

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
            VTY +LI+ LC+ +  +EA++   E + +G + +   YS+++D  CK G   QA E++ 
Sbjct: 258 QVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVN 317

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M ++   P++VTY+ ++NG  + G++ +A ++L +M   G KP+   Y   +   C  G
Sbjct: 318 EMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKG 377

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIH----------------------------- 376
              EA   +        TPN +T+S  + +H                             
Sbjct: 378 NSSEAREMMKASEEQWWTPNAITYS--VVMHGFRREGKLSDACDVVREMIGKGFFPTPVE 435

Query: 377 -NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            N ++Q LC+    + A +      N   +V+++ ++++I  FC++ DI  +  ++D++ 
Sbjct: 436 INLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMY 495

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           L    PD  T++ ++ AL  + ++ +A EL L
Sbjct: 496 LSNKHPDAVTYTTIIDALGKKGRIEEATELTL 527



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 187/420 (44%), Gaps = 13/420 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I  L        A   L    K    + +  + +I   Y +  R   A  + 
Sbjct: 257 DQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIV 316

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M   GC P   +Y  ++    +  ++  A +  + M + G +P   S    +K LC+ 
Sbjct: 317 NEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQK 376

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G    A ++ +    +  TP++ TY  +++G  R GK+ +A ++ +EM  K   PT V 
Sbjct: 377 -GNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVE 435

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ-MM 287
              L+  LC+   V+EA +  EE  + G   N   +++++   C+      A+ LL  M 
Sbjct: 436 INLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMY 495

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           +S +H P+ VTY+T+++ L K+G+++EA E+  +M  +G+ P    Y  +I  +  IG+ 
Sbjct: 496 LSNKH-PDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRV 554

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS-VD 406
           ++  N LD+M         LT        N V++ LC      A    L    R+ S +D
Sbjct: 555 EDLLNLLDKM---------LTRQECRTAFNQVIEKLCTFGNLEAADKLLGKVLRTASRID 605

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           + T   L+  + +KG    + ++   +     +PD      V   L    K  +A  L L
Sbjct: 606 ANTCHVLMESYLRKGIPLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQEGKSEEADNLFL 665



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 147/363 (40%), Gaps = 35/363 (9%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           +  G   D  T++ +I+    A +   A  +L ++ K  C      + +  +G  +    
Sbjct: 320 FTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNS 379

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A  +    +E    P   +Y  V+     E +L  A    R M   G  P    +N+L
Sbjct: 380 SEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLL 439

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +++LC+  G +D A K   E  N GC  ++  + T+I+  C+   I  A  L  +M    
Sbjct: 440 LQSLCR-IGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSN 498

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM------------- 268
             P  VTYT++I+ L +   +EEA  L  +M  KG++P   TY +++             
Sbjct: 499 KHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLL 558

Query: 269 --------------------DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
                               + LC  G    A +LL  ++    R +  T   L+    +
Sbjct: 559 NLLDKMLTRQECRTAFNQVIEKLCTFGNLEAADKLLGKVLRTASRIDANTCHVLMESYLR 618

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN-FLDEMVLGGITPNRL 367
           +G    A ++  RM  + L PD  L  K+       GK +EA N FL  +  G I+ + L
Sbjct: 619 KGIPLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQEGKSEEADNLFLRFVERGNISSHCL 678

Query: 368 TWS 370
             S
Sbjct: 679 RHS 681


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 184/398 (46%), Gaps = 42/398 (10%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F++M      P+   +  +L  + +             M   GI P V +LN+LI
Sbjct: 133 DALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILI 192

Query: 163 KALCK----------------------------------NSGTMDAAFKIFREMPNRGCT 188
            + C                                     G +  A  +F +    G  
Sbjct: 193 NSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQ 252

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD  TYGTL+NGLC++G    A  L + M  K C P V+ Y ++I+ LC+ + V EA  L
Sbjct: 253 PDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNL 312

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EM +KG+ P++FTY+SL+  LC          LL  M++ +  PN+V +ST+++ LCK
Sbjct: 313 FSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCK 372

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EG +  A +++D M  +G++PD   Y  ++   C   +  EA    D MV  G  PN   
Sbjct: 373 EGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPN--- 429

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
               +R +N ++ G C+    ++A  +   M  + +  D++TY++LI   C  G +  + 
Sbjct: 430 ----VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAI 485

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  E+V  G +PD  T+  ++  L     + +A  LL
Sbjct: 486 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLL 523



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 186/391 (47%), Gaps = 30/391 (7%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  V  K+ + GC+P   ++ T++  L  E ++  A   +      G QP V +   L+ 
Sbjct: 204 AFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMN 263

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G   AA ++ R M  + C P+   Y T+I+ LC+  ++ EA  LF EM TK  S
Sbjct: 264 GLCK-VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGIS 322

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P + TY SLI+ LC     +    L  EM +  + PNV  +S+++D LCK G  + A ++
Sbjct: 323 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV 382

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           + MMI +   P++VTY+ L++G C   ++ EAV++ D M  +G  P+   Y  +I+ +C 
Sbjct: 383 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 442

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIR--------------IHNTVVQG------- 382
           I +  +A   L++M L G+  + +T++  I                H  V  G       
Sbjct: 443 IQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVT 502

Query: 383 -------LCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
                  LCK        V L ++   ++  D L Y+  I   C+ G++  +  +   L 
Sbjct: 503 YRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLS 562

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G  PD  T++ ++  L  R  + +A +L 
Sbjct: 563 SKGLQPDVRTYNIMIHGLCKRGLLDEANKLF 593



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 170/333 (51%), Gaps = 9/333 (2%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N L  A   +  M  +   P       L+ ++ K          +  +M + G  PD YT
Sbjct: 129 NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMK-HYSTVLSLSTQMDSFGIPPDVYT 187

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
              LIN  C L ++  A  +  ++    C P   T+ +LI GLC    + EA+ LF++  
Sbjct: 188 LNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTI 247

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            +G +P+V TY +LM+GLCK G +S A+ LL+ M+ K  RPN++ Y+T+++ LCK+ ++ 
Sbjct: 248 GEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVT 307

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA  +   M  +G+ PD   Y  +I   C++ +++     L+EMV   I PN + +S   
Sbjct: 308 EAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFS--- 364

Query: 374 RIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
               TVV  LCK      A  V   M  R +  D +TY++L+   C + ++ ++ ++ D 
Sbjct: 365 ----TVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDT 420

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +V  GC+P+  +++ ++      ++M +A  LL
Sbjct: 421 MVHKGCVPNVRSYNILINGYCQIQRMDKAMGLL 453



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 211/435 (48%), Gaps = 10/435 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + DN+TF+ +I  L    +   A  L D+   E        + ++  G  +V     A
Sbjct: 215 GCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAA 274

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M +  C P   +Y T++  L ++ Q+  AF  +  M   GI P + + N LI A
Sbjct: 275 IRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHA 334

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N         +  EM N    P+   + T+++ LC+ G I  A ++   M  +   P
Sbjct: 335 LC-NLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEP 393

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+L++G C    ++EA+++F+ M  KG  PNV +Y+ L++G C+     +AM LL
Sbjct: 394 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLL 453

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +    + VTY+TL++GLC  G+LQ A+ +   M   G  PD   Y  ++   C  
Sbjct: 454 EQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKN 513

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
               EA      ++L  I  + L     I ++N  + G+C+  +   A  ++ ++ ++ +
Sbjct: 514 HHLAEAM-----VLLKAIEGSNLDAD--ILVYNIAIDGMCRAGELEAARDLFSNLSSKGL 566

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D  TY+ +I   CK+G + ++ ++  ++  +GC  D   ++ ++     R      A 
Sbjct: 567 QPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFL-RSNETFGAT 625

Query: 464 LLLLELMNKCVEAEV 478
            LL E++ +   A+V
Sbjct: 626 QLLQEMLAEGFSADV 640



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 194/440 (44%), Gaps = 50/440 (11%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIR    E  + +AL +FD    E   GF+ D  T+  +++ L        A  LL  + 
Sbjct: 226 LIRGLCVEGKIGEALHLFDKTIGE---GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMV 282

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY-------------- 123
           ++ C      + +I     +  +  +A  +F +M   G  P   +Y              
Sbjct: 283 QKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWK 342

Query: 124 ---------------------ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
                                 TV+  L +E  + +A      M + G++P V +   L+
Sbjct: 343 HVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALM 402

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C  S  MD A K+F  M ++GC P+  +Y  LING C++ ++ +A  L ++M  +  
Sbjct: 403 DGHCLRS-EMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL 461

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               VTY +LI+GLC    ++ A+ LF EM + G  P++ TY  L+D LCK    ++AM 
Sbjct: 462 IADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMV 521

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ +       +I+ Y+  ++G+C+ G+L+ A ++   +  +GL+PD   Y  +I   C
Sbjct: 522 LLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLC 581

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
             G   EA     +M   G + +         I+NT+++G  +++    A Q+   M   
Sbjct: 582 KRGLLDEANKLFRKMDENGCSRDGC-------IYNTIIRGFLRSNETFGATQLLQEMLAE 634

Query: 402 SISVDSLTYSSLITCFCKKG 421
             S D  T + ++      G
Sbjct: 635 GFSADVSTTTLIVEMLSDDG 654


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 207/441 (46%), Gaps = 23/441 (5%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG----- 94
           AE   GFR     F  ++  L   N  R A  +++RV         D+ +  C       
Sbjct: 105 AESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSV 164

Query: 95  ---------YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
                    Y +       + VFDKM +    P  K+   +L IL +++ +  A   YR 
Sbjct: 165 KILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRT 224

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E GI+P + + N L+ + CK  G +     +  EM  RGC P+  TY  LINGL + G
Sbjct: 225 MGEFGIKPTIVTYNTLLDSYCK-GGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKG 283

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +  +AK L  EM       +  TY  LI G      + EA+ L EEM  KG  P V TY+
Sbjct: 284 EFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYN 343

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           S + GLCK G  S AM+ L  M++    P++V+Y+TL+ G C+ G L +A  + D ++  
Sbjct: 344 SFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI 403

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            L P    Y  ++   C  G+ + A     EM+  GI P+ +T+++       +V G CK
Sbjct: 404 YLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI-------LVNGSCK 456

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               + A + +  M +  + +DS  Y++ I    K GD  ++  + +E++  G  PD   
Sbjct: 457 MGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLII 516

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           ++ V+  L     + +A+ELL
Sbjct: 517 YNVVVDGLCKLGNLEEASELL 537



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 213/401 (53%), Gaps = 7/401 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           ++ T++++I+ L    +F  A+ L+  + K    ++   +  +  GY       +A+ + 
Sbjct: 268 NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQ 327

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M   G  PT  +Y + +  L +  ++  A +    M    + P V S N LI   C+ 
Sbjct: 328 EEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR- 386

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  AF +F E+ +    P   TY TL++GLCR G++  A++L  EM  +  +P +VT
Sbjct: 387 LGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVT 446

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT L+NG C+  S+  A   F+EM  +G+E + + Y++ + G  K G +S+A  L + M+
Sbjct: 447 YTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEML 506

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +K   P+++ Y+ +++GLCK G L+EA E+L +M   G+ PD   Y  II    + G+ +
Sbjct: 507 AKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLR 566

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL 408
           +      EM+  G+TP+ +T++  + IH    +G  +    RAF  +  M+ + I  + +
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYT--VLIHGHAGKGRLE----RAFIYFSEMQEKGILPNVI 620

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           TY+SLI   CK   + ++     E+V  G  P++ +++ ++
Sbjct: 621 TYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILI 661



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 155/316 (49%), Gaps = 36/316 (11%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  GY R+   + A  +FD+++     PT  +Y T+L  L  + +L++A +    M   
Sbjct: 379 TLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE 438

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT------------- 196
           GI P + +  +L+   CK  G++  A + F EM + G   DSY Y T             
Sbjct: 439 GIAPDIVTYTILVNGSCK-MGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSR 497

Query: 197 ----------------------LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
                                 +++GLC+LG + EA EL ++M +    P  VTYTS+I+
Sbjct: 498 AFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIH 557

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
              ++  + +   +F EM SKG+ P+V TY+ L+ G    G   +A      M  K   P
Sbjct: 558 AHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILP 617

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N++TY++L+NGLCK  ++ +A      M  +G+ P+   Y  +I+  C++G +QEA +  
Sbjct: 618 NVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLY 677

Query: 355 DEMVLGGITPNRLTWS 370
            +M+  G+ P+  T S
Sbjct: 678 KQMLDRGVQPDSCTHS 693



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 103/223 (46%), Gaps = 30/223 (13%)

Query: 245 AMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           A+RLF    S+ G   + F + ++++ L +      A  +++ +I+     N+     +L
Sbjct: 98  ALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINA----NMHRIVDVL 153

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
            G C   ++  +V+ILD +               I  +      ++  +  D+M+   ++
Sbjct: 154 IGGCVSSEV--SVKILDLL---------------IWVYSKKSMVEQCLSVFDKMIKSRLS 196

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           P+       ++  N +++ L   D  ++A +VY +M    I    +TY++L+  +CK G 
Sbjct: 197 PD-------VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +   ++ E+   GC P++ T++ ++  L  + +  QA  L+
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLI 292


>gi|225466731|ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Vitis vinifera]
          Length = 503

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 235/455 (51%), Gaps = 20/455 (4%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           KW   +   Q+ Q+IR +K+   AL IF+ A +++ N +RH+   ++ MI+ L S+ +  
Sbjct: 4   KWPRFLIPTQLSQMIRTQKNPLTALKIFNEAKSKFPN-YRHNGPVYATMINVLGSSGRIA 62

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
              +++D++ ++ C+  + +F S+ + Y R     +A+ +F  + +F C     S+ T+L
Sbjct: 63  EMREVIDQMKQDSCECKDSVFSSVMKTYARAGMVDEAVSLFKTLPQFNCVNWTGSFNTLL 122

Query: 128 AILVEENQLKLAFR-FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
            ILV+E++L+ A R F  H     ++  + SLN+L+ ALC+ + + D A  +F+EM  + 
Sbjct: 123 RILVKESKLETACRLFLEHSCGWEVKSRIGSLNLLMDALCQINRS-DLALHVFQEMRYQC 181

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKEL----FKEMETKACSPTVVTYTSLINGLCQSKSV 242
           C+PD  +Y  L+ GLC  G++ EA  L    F  +  K     +  Y +L++ LC +  V
Sbjct: 182 CSPDKESYRILMRGLCEDGRLNEATHLLYSMFWRISQKGGGEDIAAYRTLLDALCDNGHV 241

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSL-MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           EEA+ +  ++  KG++        L +   C G    +   L+   + +   P++ +YS 
Sbjct: 242 EEALEILGKVLKKGLKAPKRCRGHLDLSYCCNGEDIERTKGLINEALIRGGVPSMASYSA 301

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL-DEMVLG 360
           +   L  E K+ EA ++LD M+ +G KP   +Y   I+  C  G  +EA   + +EMV  
Sbjct: 302 MAIDLYSERKIGEANQVLDEMRDRGFKPSLSIYEAKIAALCRCGGVEEAVKVIKEEMVED 361

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV-YLSMRNRSIS--VDSLTYSSLITCF 417
              P        +R++N V++GLC+ +   AF V YL    R +    D  TYS L+   
Sbjct: 362 SCVPT-------VRLYNIVLKGLCR-EGKSAFAVGYLEKMARQVGCVADKETYSILVDGL 413

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           C  G   +++ I++ +++    P   T++ ++  L
Sbjct: 414 CCDGRFVEASGILERMLIRSSSPGVETYNTLIRGL 448



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 141/314 (44%), Gaps = 41/314 (13%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK----LAFRFYRHMREIGIQ 152
           +++R   A+ VF +M+   C P  +SY  ++  L E+ +L     L +  +  + + G  
Sbjct: 163 QINRSDLALHVFQEMRYQCCSPDKESYRILMRGLCEDGRLNEATHLLYSMFWRISQKGGG 222

Query: 153 PCVASLNVLIKALCKNS------------------------GTMDAAF-----------K 177
             +A+   L+ ALC N                         G +D ++            
Sbjct: 223 EDIAAYRTLLDALCDNGHVEEALEILGKVLKKGLKAPKRCRGHLDLSYCCNGEDIERTKG 282

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  E   RG  P   +Y  +   L    KI EA ++  EM  +   P++  Y + I  LC
Sbjct: 283 LINEALIRGGVPSMASYSAMAIDLYSERKIGEANQVLDEMRDRGFKPSLSIYEAKIAALC 342

Query: 238 QSKSVEEAMRLF-EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPN 295
           +   VEEA+++  EEM      P V  Y+ ++ GLC+ G S+ A+  L+ M  +     +
Sbjct: 343 RCGGVEEAVKVIKEEMVEDSCVPTVRLYNIVLKGLCREGKSAFAVGYLEKMARQVGCVAD 402

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
             TYS L++GLC +G+  EA  IL+RM ++   P    Y  +I   C +G+  +A  +L+
Sbjct: 403 KETYSILVDGLCCDGRFVEASGILERMLIRSSSPGVETYNTLIRGLCLMGRQYDAVIWLE 462

Query: 356 EMVLGGITPNRLTW 369
           EMV+ G  P    W
Sbjct: 463 EMVVQGKLPAVSVW 476



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 2/170 (1%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE-METKACSPTVVTYTSLI 233
           A ++  EM +RG  P    Y   I  LCR G + EA ++ KE M   +C PTV  Y  ++
Sbjct: 315 ANQVLDEMRDRGFKPSLSIYEAKIAALCRCGGVEEAVKVIKEEMVEDSCVPTVRLYNIVL 374

Query: 234 NGLCQSKSVEEAMRLFEEM-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
            GLC+      A+   E+M R  G   +  TYS L+DGLC  G   +A  +L+ M+ +  
Sbjct: 375 KGLCREGKSAFAVGYLEKMARQVGCVADKETYSILVDGLCCDGRFVEASGILERMLIRSS 434

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            P + TY+TL+ GLC  G+  +AV  L+ M +QG  P   ++  +++  C
Sbjct: 435 SPGVETYNTLIRGLCLMGRQYDAVIWLEEMVVQGKLPAVSVWDSLVASVC 484



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 5/187 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH-MREIGIQPCVASLNVL 161
           +A +V D+M++ G +P+   Y   +A L     ++ A +  +  M E    P V   N++
Sbjct: 314 EANQVLDEMRDRGFKPSLSIYEAKIAALCRCGGVEEAVKVIKEEMVEDSCVPTVRLYNIV 373

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K LC+   +  A   + +     GC  D  TY  L++GLC  G+  EA  + + M  ++
Sbjct: 374 LKGLCREGKSAFAVGYLEKMARQVGCVADKETYSILVDGLCCDGRFVEASGILERMLIRS 433

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC----KGGCS 277
            SP V TY +LI GLC      +A+   EEM  +G  P V  + SL+  +C    + G  
Sbjct: 434 SSPGVETYNTLIRGLCLMGRQYDAVIWLEEMVVQGKLPAVSVWDSLVASVCSNMTEAGVC 493

Query: 278 SQAMELL 284
           S+ +E L
Sbjct: 494 SETLEKL 500


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 212/444 (47%), Gaps = 57/444 (12%)

Query: 15  SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLD 74
           +  ++Q++ + K  N A  +F +A  E     R D   FS +I+  + +   R A +   
Sbjct: 36  AKNLIQVVVSRKGKNSASAVF-AAILETQGTQRSDIYVFSGLITAYLESGFLRDAIE--- 91

Query: 75  RVNKEKCDITEDIFLSICRGYGRVHR---PLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
                            C    R H+   P D  R                   VL  L+
Sbjct: 92  -----------------CYRLTREHKFWVPFDTCR------------------KVLEHLM 116

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +    KL + FY+ + E G    +   N+L+   CK  G +  A  +F  +   G  P  
Sbjct: 117 KLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKE-GDIRVALSVFDAITKWGLRPSV 175

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            ++ TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A  LF+E
Sbjct: 176 VSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDE 235

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ GLCK+G 
Sbjct: 236 MLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGD 295

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           L++A +++D M+++GLKPD   Y  +I   C  G  + A      M+   I  + + ++ 
Sbjct: 296 LKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYT- 354

Query: 372 HIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                  ++ GLC+     D  +  +  LS+  R    D+ TY+ +I  FCKKGD+   +
Sbjct: 355 ------ALISGLCQEGRSIDAEKMLREMLSVGLRP---DTGTYTMIINEFCKKGDVWTGS 405

Query: 428 RIVDELVLDGCLPDEGTWSAVMTA 451
           +++ E+  DG +P   T++ +M  
Sbjct: 406 KLLKEMQRDGHVPSVVTYNVLMNG 429



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 203/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A++L+  V   K   +                   A 
Sbjct: 13  FRHTLHSYCTMIHFLCTHQMLPEAKNLIQVVVSRKGKNS-------------------AS 53

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 54  AVFAAILE--TQGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKV 111

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  ++E+   G     Y +  L++  C+ G I  A  +F  +
Sbjct: 112 LEHLMKL-----KYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAI 166

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV++ +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 167 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 226

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+E+  +M  Q L PD   Y  +
Sbjct: 227 DDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTL 286

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P++++++       T++ G CK  D   AF+   
Sbjct: 287 IYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYT-------TLIDGCCKEGDLETAFEHRK 339

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD GT++ ++     + 
Sbjct: 340 RMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKG 399

Query: 457 KMRQAAELL 465
            +   ++LL
Sbjct: 400 DVWTGSKLL 408


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 207/441 (46%), Gaps = 23/441 (5%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG----- 94
           AE   GFR     F  ++  L   N  R A  +++RV         D+ +  C       
Sbjct: 411 AESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSV 470

Query: 95  ---------YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
                    Y +       + VFDKM +    P  K+   +L IL +++ +  A   YR 
Sbjct: 471 KILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRT 530

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E GI+P + + N L+ + CK  G +     +  EM  RGC P+  TY  LINGL + G
Sbjct: 531 MGEFGIKPTIVTYNTLLDSYCK-GGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKG 589

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +  +AK L  EM       +  TY  LI G      + EA+ L EEM  KG  P V TY+
Sbjct: 590 EFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYN 649

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           S + GLCK G  S AM+ L  M++    P++V+Y+TL+ G C+ G L +A  + D ++  
Sbjct: 650 SFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI 709

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            L P    Y  ++   C  G+ + A     EM+  GI P+ +T+++       +V G CK
Sbjct: 710 YLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI-------LVNGSCK 762

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               + A + +  M +  + +DS  Y++ I    K GD  ++  + +E++  G  PD   
Sbjct: 763 MGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLII 822

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           ++ V+  L     + +A+ELL
Sbjct: 823 YNVVVDGLCKLGNLEEASELL 843



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 167/343 (48%), Gaps = 10/343 (2%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           ++L+++R +  ++KA+ ++ +   E+  G +    T++ ++       + +   DLL  +
Sbjct: 510 RILRILRDKDLMSKAVEVYRT-MGEF--GIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEM 566

Query: 77  NKEKC---DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
            +  C   D+T ++ ++     G   +   A  +  +M + G + +  +Y  ++     +
Sbjct: 567 QRRGCAPNDVTYNVLINGLSKKGEFEQ---AKGLIGEMLKTGLKVSAYTYNPLIYGYFNK 623

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
             L  A      M   G  P VA+ N  I  LCK  G M  A +   +M      PD  +
Sbjct: 624 GLLAEALSLQEEMVLKGASPTVATYNSFIYGLCK-LGRMSDAMQQLSDMLANNLLPDVVS 682

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y TLI G CRLG + +A  LF E+ +    PT+VTY +L++GLC+   +E A +L  EM 
Sbjct: 683 YNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMI 742

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           ++G+ P++ TY+ L++G CK G  S A E    M+ +    +   Y+T + G  K G   
Sbjct: 743 NEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTS 802

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
            A  + + M  +G  PD  +Y  ++   C +G  +EA+  L +
Sbjct: 803 RAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQK 845



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 103/223 (46%), Gaps = 30/223 (13%)

Query: 245 AMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           A+RLF    S+ G   + F + ++++ L +      A  +++ +I+     N+     +L
Sbjct: 404 ALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINA----NMHRIVDVL 459

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
            G C   ++  +V+ILD +               I  +      ++  +  D+M+   ++
Sbjct: 460 IGGCVSSEV--SVKILDLL---------------IWVYSKKSMVEQCLSVFDKMIKSRLS 502

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           P+       ++  N +++ L   D  ++A +VY +M    I    +TY++L+  +CK G 
Sbjct: 503 PD-------VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK 555

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +   ++ E+   GC P++ T++ ++  L  + +  QA  L+
Sbjct: 556 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLI 598


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 247/507 (48%), Gaps = 46/507 (9%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +  E  V +AL + D    E   G + D  T+  +++ +        A ++
Sbjct: 11  VTFTTLMNGLCREGRVLQALALVDRMVEE---GHQPDAVTYGTIVNGMCKLGDTVSALNM 67

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++++ +      I+ +I     +    + A  +F +M E G  P   +Y  ++     
Sbjct: 68  LRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCS 127

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             +   A +  R M E  I P V + + LI A  K  G +  A +++REM  R   P + 
Sbjct: 128 YGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVK-EGKVSGAEELYREMLRRNIFPTTI 186

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK-----------S 241
           TY ++I+G C+  ++ +AK +F  M +K CSP ++T  +LI+G C++K           +
Sbjct: 187 TYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGN 246

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V  A  LF+EM S GV P++ T ++L+ GLC+ G   +A+E+ ++    +   +  T + 
Sbjct: 247 VNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNI 306

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           ++NG+CK  K+ EA ++ + + + G++ D   Y  +I  F   G +  A +   EM+  G
Sbjct: 307 IINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKG 366

Query: 362 ITPNRLTW----------------------------SLHIRIHNTVVQGLCKTD-PNRAF 392
           I P+ +T+                            S  +   +T+++G CK    +   
Sbjct: 367 IIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGL 426

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +++  M  R +  D++TY++LI  FCK GD++ +  I +E+V  G  PD  T+ +++  L
Sbjct: 427 ELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGL 486

Query: 453 WDRRKMRQAAELLLLELMNKCVEAEVD 479
             + ++++   L +LE + K V+ E++
Sbjct: 487 CTKAELQKG--LTMLEDLQKSVDHELE 511



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 159/320 (49%), Gaps = 31/320 (9%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E G    V +   L+  LC+  G +  A  +   M   G  PD+ TYGT++NG+C+LG
Sbjct: 1   MVETGCPANVVTFTTLMNGLCR-EGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLG 59

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
               A  + ++M+       VV Y+++++ LC+  +  +A  +F EM  KG+ PNV TY+
Sbjct: 60  DTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYN 119

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            ++DG C  G  S A +LL+ MI +   P++VT+S L+N   KEGK+  A E+   M  +
Sbjct: 120 CMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRR 179

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            + P    Y  +I  FC   + ++A +  D MV  G +P+ +T        NT++ G C+
Sbjct: 180 NIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITL-------NTLIDGCCR 232

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              +                       LI  FC+ G+++ +  +  E++ +G  PD  T 
Sbjct: 233 AKRH-----------------------LIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTC 269

Query: 446 SAVMTALWDRRKMRQAAELL 465
           + ++  L +  K+ +A E+ 
Sbjct: 270 NTLLAGLCENGKLEKALEMF 289


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 207/431 (48%), Gaps = 39/431 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRV--------------------NKEKCDITE 85
           FRH   ++  MI  L S   F  A+ L+  V                      ++ DI  
Sbjct: 15  FRHTLHSYCAMIHFLCSHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIY- 73

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYR 144
            +F  +   Y  +    DA+  +   +E   C P       VL  L++    KL + FY 
Sbjct: 74  -VFSGLITAYLELGFLRDAIDCYRLTREHKFCVPFDTCR-KVLEHLMKLKYFKLVWGFYE 131

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            + E G    +   N+L+   CK  G +  A  +F  +   G  P   +Y TL+NG  RL
Sbjct: 132 EILECGYPASLYFFNILMHRFCKE-GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G + E   L   M      P V TY+ LINGLC+   +++A +LF+EM  KG+ PN  T+
Sbjct: 191 GDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTF 250

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           ++L+DG CK G    AME+ + M+S+   P++VTY+ L+ GLCK+G L++A +++D M +
Sbjct: 251 TTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSM 310

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            GLKPD   Y  +I   C  G    A      M+   I  + + ++        ++ GLC
Sbjct: 311 XGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYT-------ALISGLC 363

Query: 385 K----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           +     D  +  +  LS+    +  D+ TY+ +I  FCKKGD+ K ++++ E+  DG +P
Sbjct: 364 QEGRSVDAEKMLREMLSV---GLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420

Query: 441 DEGTWSAVMTA 451
              T++ +M  
Sbjct: 421 SVVTYNVLMNG 431



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 124/304 (40%), Gaps = 52/304 (17%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK-EMETKACSPT 225
           K  G+  A F    E        D Y +  LI     LG + +A + ++   E K C P 
Sbjct: 49  KGKGSASAVFAAILETKGTQ-RSDIYVFSGLITAYLELGFLRDAIDCYRLTREHKFCVP- 106

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             T   ++  L + K  +     +EE+   G   +++ ++ LM                 
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM----------------- 149

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
                 HR             CKEG ++ A  + D +   GL+P    Y  +++ +  +G
Sbjct: 150 ------HR------------FCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 191

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNR 401
              E       M   G+ P+  T+S+       ++ GLCK     D N+ F     M  +
Sbjct: 192 DLDEGFRLKSAMHASGVHPDVYTYSV-------LINGLCKESKMDDANKLFD---EMLEK 241

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  +S+T+++LI   CK G +  +  I  +++    LPD  T++A++  L  +  ++QA
Sbjct: 242 GLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQA 301

Query: 462 AELL 465
            +L+
Sbjct: 302 HDLI 305


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 222/444 (50%), Gaps = 23/444 (5%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICRGYGRVHRPLDAMRV 107
           T++ +I  L    Q R A  +LD +    C    +T +I L + C+G G       AM +
Sbjct: 9   TYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQ----AMEL 64

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            D M+  GC P   +Y  ++  +  E  +  A    R++   G +P   + N ++K LC 
Sbjct: 65  IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS 124

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
                DA  ++  EM    C P+  T+  +I  LCR G + +A +L ++M    C+  +V
Sbjct: 125 AERWGDAD-ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIV 183

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY ++INGLC+ ++V+ AM L  +M+S G +P++ TY++L+ GLC       A EL+  M
Sbjct: 184 TYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNM 243

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                 P+ VT++TL+  LC++G + +A+E+  +M  +G  P++  Y  IIS      K 
Sbjct: 244 TQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKL 303

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            +A    +EM   G  P++        I+  + + L   D    A Q    +++  IS  
Sbjct: 304 DQALELFNEMGHKGFNPDK--------IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPH 355

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           ++ Y++++   C+ G    +  I+  +V  GC+PD+ T+  ++  L     + +A ELL+
Sbjct: 356 TVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLI 415

Query: 467 L-----ELMNKCVEAEVDIQNQDV 485
                  L+N  +++E  + +Q++
Sbjct: 416 KLCSRDVLVNSLIKSEALLLDQNI 439



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 197/410 (48%), Gaps = 19/410 (4%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DIT 84
           V  AL + D        G   D  T+++++        +R A +L+D +  E C   ++T
Sbjct: 23  VRDALSVLDDMLCR---GCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVT 79

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            ++ +    G G V    DA+ +   +   GC+P+  +Y TVL  L    +   A     
Sbjct: 80  YNVLMDGMCGEGDVD---DALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVT 136

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M      P  A+ NV+I +LC+  G +  A ++  +M   GCT +  TY  +INGLC  
Sbjct: 137 EMLRENCPPNEATFNVVIYSLCR-KGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQ 195

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
             +  A  L  +M++  C P +VTY +L+ GLC +    +A  L + M   G  P+  T+
Sbjct: 196 RNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTF 255

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           ++L+  LC+ G    A+E+ + M  K   PN +TYST+++GL K  KL +A+E+ + M  
Sbjct: 256 NTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGH 315

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +G  PD  +Y  +  C  D    +EA   + ++   GI+P       H  ++N ++ GLC
Sbjct: 316 KGFNPDK-IYQLLAECLNDDDTIEEAIQTVRKLQDSGISP-------HTVLYNAILLGLC 367

Query: 385 KTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           +      A  +   M +     D LTY  LI     +G ++++  ++ +L
Sbjct: 368 RNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 417



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 171/327 (52%), Gaps = 9/327 (2%)

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
           +P   +Y  ++  L E  Q++ A      M   G  P V + N+L++A CK  G    A 
Sbjct: 4   QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRG-YRQAM 62

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           ++   M   GCTP++ TY  L++G+C  G + +A EL + + +  C P+ V Y +++ GL
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 122

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C ++   +A  L  EM  +   PN  T++ ++  LC+ G   QA++LL+ M       NI
Sbjct: 123 CSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANI 182

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           VTY+ ++NGLC++  +  A+ +L +MK  G KPD   Y  ++   C   ++ +A   +D 
Sbjct: 183 VTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDN 242

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLIT 415
           M   G  P+ +T+       NT++  LC+      A +V+  M ++  + +S+TYS++I+
Sbjct: 243 MTQNGCLPDNVTF-------NTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIIS 295

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDE 442
              K   + ++  + +E+   G  PD+
Sbjct: 296 GLAKATKLDQALELFNEMGHKGFNPDK 322



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 161/316 (50%), Gaps = 9/316 (2%)

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           +QP   + N LI  LC+  G +  A  +  +M  RGC PD  TY  L+   C+     +A
Sbjct: 3   VQPNAYTYNPLIHTLCE-RGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQA 61

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            EL   M  + C+P  VTY  L++G+C    V++A+ L   + S G +P+   Y++++ G
Sbjct: 62  MELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKG 121

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC       A EL+  M+ +   PN  T++ ++  LC++G LQ+A+++L++M   G   +
Sbjct: 122 LCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTAN 181

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              Y  II+  C+      A   L +M   G  P+ +T+       NT+++GLC      
Sbjct: 182 IVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTY-------NTLLKGLCSAARWV 234

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A ++  +M       D++T+++LI   C+KG +  +  +  ++   GC P+  T+S ++
Sbjct: 235 DAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTII 294

Query: 450 TALWDRRKMRQAAELL 465
           + L    K+ QA EL 
Sbjct: 295 SGLAKATKLDQALELF 310



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 166/331 (50%), Gaps = 5/331 (1%)

Query: 24  AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI 83
            E DV+ AL +  +  +   +G +     ++ ++  L SA ++  A++L+  + +E C  
Sbjct: 89  GEGDVDDALELLRNLPS---HGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPP 145

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
            E  F  +     R      A+++ +KM + GC     +Y  ++  L E+  +  A    
Sbjct: 146 NEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLL 205

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M+  G +P + + N L+K LC  +  +DA  ++   M   GC PD+ T+ TLI  LC+
Sbjct: 206 SKMKSYGCKPDIVTYNTLLKGLCSAARWVDAE-ELMDNMTQNGCLPDNVTFNTLIGFLCQ 264

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G + +A E+FK+M  K C+P  +TY+++I+GL ++  +++A+ LF EM  KG  P+   
Sbjct: 265 KGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI- 323

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y  L + L       +A++ ++ +      P+ V Y+ +L GLC+ GK + A++I+  M 
Sbjct: 324 YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMV 383

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
             G  PD   Y  +I      G   EA   L
Sbjct: 384 SSGCMPDDLTYVILIEGLAYEGYLNEARELL 414



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 119/253 (47%), Gaps = 5/253 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +  +++V+ A+ +  S    Y  G + D  T++ ++  L SA ++  AE+L
Sbjct: 183 VTYNAIINGLCEQRNVDGAMGLL-SKMKSY--GCKPDIVTYNTLLKGLCSAARWVDAEEL 239

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           +D + +  C      F ++     +    +DA+ VF +M + GC P   +Y T+++ L +
Sbjct: 240 MDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAK 299

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             +L  A   +  M   G  P    +  L+     +  T++ A +  R++ + G +P + 
Sbjct: 300 ATKLDQALELFNEMGHKGFNP--DKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTV 357

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
            Y  ++ GLCR GK   A ++   M +  C P  +TY  LI GL     + EA  L  ++
Sbjct: 358 LYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 417

Query: 253 RSKGVEPNVFTYS 265
            S+ V  N    S
Sbjct: 418 CSRDVLVNSLIKS 430



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%)

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  ++ TY+ LI   C++G +  +  ++D+++  GC PD  T++ ++ A    R  RQA 
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 463 ELLLLELMNKCVEAEV 478
           EL+ L     C    V
Sbjct: 63  ELIDLMRAEGCTPNNV 78


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 216/425 (50%), Gaps = 15/425 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ +    + ++  L    + + +    D+V  +   + +  + ++  G  ++     A
Sbjct: 197 GYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCA 256

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++   +++    P    Y T++  L ++  +  A+ FY  M   GI P V + + LI  
Sbjct: 257 IKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICG 316

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C  +G +  AF +  EM  +   PD YTY  LI+ LC+ GK+ EAK L   M  +   P
Sbjct: 317 FCL-AGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKP 375

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY++L++G C    V  A ++F  M    V P+V +Y+ +++GLCKG    +AM LL
Sbjct: 376 NVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLL 435

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+ K   PN VTY++L++GLCK G++  A++++  +  +G   D   Y  ++   C  
Sbjct: 436 REMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKN 495

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRN 400
               +A     +M   GI PN+ T++        ++ GLCK     +  + FQ  L    
Sbjct: 496 QNLDKAIALFMKMKERGIQPNKYTYT-------ALIDGLCKGARLKNAQKLFQHILV--- 545

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +   +D  TY+ +I   CK+G + ++  +  ++  +GC+PD  T+  ++ +L+++ +  +
Sbjct: 546 KGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDK 605

Query: 461 AAELL 465
           A +LL
Sbjct: 606 AEKLL 610



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 208/421 (49%), Gaps = 15/421 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRP 101
           G   D  T S++I+      Q   +  +L ++ K        I  ++ +G    G V + 
Sbjct: 162 GIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKK- 220

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             ++   DK+   G +    SY T+L  L +  + + A +  R + +   +P V   N +
Sbjct: 221 --SLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTI 278

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I  LCK+   ++ A+  + EM +RG  PD  TY TLI G C  G++  A  L  EM  K 
Sbjct: 279 IDGLCKDK-LVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKN 337

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            +P V TYT LI+ LC+   ++EA  L   M  +GV+PNV TYS+LMDG C  G    A 
Sbjct: 338 INPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAK 397

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   M+     P++ +Y+ ++NGLCK   + EA+ +L  M  + + P+   Y  +I   
Sbjct: 398 QIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGL 457

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C  G+   A + + E+   G   + +T++       +++ GLCK  + ++A  +++ M+ 
Sbjct: 458 CKSGRITSALDLMKELHHRGQPADVITYT-------SLLDGLCKNQNLDKAIALFMKMKE 510

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I  +  TY++LI   CK   +  + ++   +++ GC  D  T++ ++  L     + +
Sbjct: 511 RGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDE 570

Query: 461 A 461
           A
Sbjct: 571 A 571



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 191/344 (55%), Gaps = 16/344 (4%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K VN+A   +D  T   + G   D  T+S +I     A Q   A  LL+ +  +  +I 
Sbjct: 285 DKLVNEA---YDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLK--NIN 339

Query: 85  EDIFL------SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138
            D++       ++C+  G++    +A  +   M + G +P   +Y T++       ++  
Sbjct: 340 PDVYTYTILIDALCKE-GKLK---EAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHN 395

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A + +  M +  + P V S N++I  LCK   ++D A  + REM ++   P++ TY +LI
Sbjct: 396 AKQIFHAMVQTEVNPSVCSYNIMINGLCKGK-SVDEAMNLLREMLHKNVVPNTVTYNSLI 454

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +GLC+ G+I  A +L KE+  +     V+TYTSL++GLC+++++++A+ LF +M+ +G++
Sbjct: 455 DGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQ 514

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PN +TY++L+DGLCKG     A +L Q ++ K    ++ TY+ ++ GLCKEG L EA+ +
Sbjct: 515 PNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAM 574

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
             +M+  G  PDA  +  II    +  +  +A   L EM+  G+
Sbjct: 575 KSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 188/393 (47%), Gaps = 30/393 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F+ M      P+   +  +L  LV+      A    + M   GI+P + +L++LI
Sbjct: 115 DAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILI 174

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C + G M  +F +  ++   G  P++    TL+ GLC  G++ ++     ++  +  
Sbjct: 175 NCFC-HLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGF 233

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V+Y +L+NGLC+      A++L   +  +   P+V  Y++++DGLCK    ++A +
Sbjct: 234 QMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYD 293

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
               M S+   P+++TYSTL+ G C  G+L  A  +L+ M L+ + PD   Y  +I   C
Sbjct: 294 FYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALC 353

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWS------------------LHIRI--------- 375
             GK +EA N L  M   G+ PN +T+S                   H  +         
Sbjct: 354 KEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVC 413

Query: 376 -HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            +N ++ GLCK    + A  +   M ++++  +++TY+SLI   CK G I  +  ++ EL
Sbjct: 414 SYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKEL 473

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
              G   D  T+++++  L   + + +A  L +
Sbjct: 474 HHRGQPADVITYTSLLDGLCKNQNLDKAIALFM 506



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 147/288 (51%), Gaps = 1/288 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++++I  L    + + A++LL  + KE        + ++  GY  V    +A ++F
Sbjct: 341 DVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIF 400

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M +    P+  SY  ++  L +   +  A    R M    + P   + N LI  LCK 
Sbjct: 401 HAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCK- 459

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG + +A  + +E+ +RG   D  TY +L++GLC+   + +A  LF +M+ +   P   T
Sbjct: 460 SGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYT 519

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT+LI+GLC+   ++ A +LF+ +  KG   +V+TY+ ++ GLCK G   +A+ +   M 
Sbjct: 520 YTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKME 579

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
                P+ VT+  ++  L ++ +  +A ++L  M  +GL      +G+
Sbjct: 580 DNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLHFRNFHGE 627



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 168/353 (47%), Gaps = 35/353 (9%)

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           Q+  +F     + ++G QP   +L  L+K      G    A K+ R + +R   P  +  
Sbjct: 26  QMAFSFSVLGKILKLGYQPNSITLTTLMK------GETRCAIKLPRMIEDRSTRPLMWLS 79

Query: 195 GTLINGLCRLGK---------------------IYEAKELFKEMETKACSPTVVTYTSLI 233
            +L + +                          +++A   F  M     +P+++ +  ++
Sbjct: 80  SSLSHSIPNFPPFLPNPTFPFYFHSQPPSIHDVVHDAVSQFNGMLLMRNTPSIIEFGKIL 139

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
             L + K    A+ L ++M  KG+EP++ T S L++  C  G  + +  +L  ++   ++
Sbjct: 140 GSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQ 199

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN +  +TL+ GLC +G++++++   D++  QG + +   YG +++  C IG+ + A   
Sbjct: 200 PNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKL 259

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSS 412
           L  +      P+       + ++NT++ GLCK    N A+  Y  M +R I  D +TYS+
Sbjct: 260 LRMIEDRSTRPD-------VVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYST 312

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           LI  FC  G +  +  +++E+ L    PD  T++ ++ AL    K+++A  LL
Sbjct: 313 LICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLL 365



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 32/267 (11%)

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K   P +VT + LIN L     +  +  +  ++   G +PN  T ++LM G  +  C   
Sbjct: 5   KGIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLMKGETR--C--- 59

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCK---------------------EGKLQEAVEI 318
           A++L +M+  +  RP +   S+L + +                          + +AV  
Sbjct: 60  AIKLPRMIEDRSTRPLMWLSSSLSHSIPNFPPFLPNPTFPFYFHSQPPSIHDVVHDAVSQ 119

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
            + M L    P    +GKI+     +  +  A +   +M + GI P+ +T S+ I     
Sbjct: 120 FNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCH 179

Query: 379 VVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           + Q         +F V   +       +++  ++L+   C KG++ KS    D++V  G 
Sbjct: 180 LGQ------MAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGF 233

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
             ++ ++  ++  L    + R A +LL
Sbjct: 234 QMNQVSYGTLLNGLCKIGETRCAIKLL 260


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 190/380 (50%), Gaps = 14/380 (3%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           D  LS+   +G +    DA+R   ++++    P  ++   +L  L    Q  L  R +  
Sbjct: 138 DTLLSLLADHGLLD---DAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLF-- 192

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
             ++   P V + N++I  LCK  G +  A  +F  M   GC+PD  TY +LI+G  + G
Sbjct: 193 --DLLPVPNVFTFNIVIDFLCK-EGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCG 249

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + E ++L  EM    C+  VVTY +LIN   +   +E+A   F EM+ +GV  NV T+S
Sbjct: 250 DLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFS 309

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           + +D  CK G   +AM+L   M  +   PN  TY++L++G CK G+L +A+ +LD M  Q
Sbjct: 310 TFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQ 369

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GL P+   Y  ++   C  GK  EA N L  M  GG+  N L ++  I  H         
Sbjct: 370 GLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGH------FMN 423

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            +  RA  +   M+N+ + +D   Y +LI   CK   + ++  ++ ++   G  P+   +
Sbjct: 424 NNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIY 483

Query: 446 SAVMTALWDRRKMRQAAELL 465
           + +M AL+   K  +A  LL
Sbjct: 484 TTIMDALFKAGKESEAVALL 503



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 208/414 (50%), Gaps = 9/414 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+++I  L    +   A  L  R+    C      + S+  GYG+     +  ++  +M
Sbjct: 202 TFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEM 261

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           ++ GC     +Y  ++    +  +++ A+ ++  M+  G+   V + +  + A CK  G 
Sbjct: 262 RKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCK-EGL 320

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A K+F +M  RG  P+ +TY +L++G C+ G++ +A  L  EM  +   P VVTYT 
Sbjct: 321 VQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTV 380

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +++GLC+   V EA  +   M   GV+ N   Y++L+ G      S +A++LL  M +K 
Sbjct: 381 MVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKG 440

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              ++  Y TL+ GLCK+ K+ EA  +L +M   GL+P+  +Y  I+      GK  EA 
Sbjct: 441 MELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAV 500

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             L +++  G  PN +T+         ++ GLCK    + A   +  MR   +  +   Y
Sbjct: 501 ALLHKILDSGFQPNVVTYC-------ALIDGLCKAGSISEAISHFNKMRELGLDPNVQAY 553

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           ++LI  FCK G ++K+  +++E++  G   D+  +++++     +  ++ A  L
Sbjct: 554 TALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFAL 607



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 212/461 (45%), Gaps = 50/461 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVH 99
           A G   D  T++ +I            E L+  + K  C    +T +  ++    +GR+ 
Sbjct: 228 AMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRME 287

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           +   A   F +MK  G      ++ T +    +E  ++ A + +  MR  G+ P   +  
Sbjct: 288 K---AYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYT 344

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK-------- 211
            L+   CK +G +D A  +  EM ++G  P+  TY  +++GLC+ GK+ EA         
Sbjct: 345 SLVDGTCK-AGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMER 403

Query: 212 ---------------------------ELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
                                      +L  +M+ K     V  Y +LI GLC+ + V+E
Sbjct: 404 GGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDE 463

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A  L  +M   G+ PN   Y+++MD L K G  S+A+ LL  ++    +PN+VTY  L++
Sbjct: 464 AKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALID 523

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           GLCK G + EA+   ++M+  GL P+   Y  +I  FC IG   +A + ++EM+  G++ 
Sbjct: 524 GLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSL 583

Query: 365 NRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           +++ ++       +++ G  K  +   AF +   M    + +D   Y+  I+ FC    +
Sbjct: 584 DKVVYT-------SLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMM 636

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            ++  ++ E++  G  PD+  ++ ++        M +A+ L
Sbjct: 637 QEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSL 677



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 158/330 (47%), Gaps = 4/330 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           ++ A+V+ D    +   G   +  T+++M+  L    +   A+++L  + +      E +
Sbjct: 356 LDDAIVLLDEMVHQ---GLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELL 412

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G+   +    A+ + ++MK  G E     Y T++  L ++ ++  A      M 
Sbjct: 413 YTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMA 472

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G++P       ++ AL K +G    A  +  ++ + G  P+  TY  LI+GLC+ G I
Sbjct: 473 GCGLRPNTVIYTTIMDALFK-AGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSI 531

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA   F +M      P V  YT+LI+G C+  S+ +AM L  EM  KG+  +   Y+SL
Sbjct: 532 SEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSL 591

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG  K      A  L   MI    + ++  Y+  ++G C    +QEA  +L  M   G+
Sbjct: 592 IDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGI 651

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            PD  +Y  +I  +  +G  +EA++  +EM
Sbjct: 652 TPDKTVYNCLIRKYQKLGNMEEASSLQNEM 681



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 14/286 (4%)

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
           P R   P      TL++ L   G + +A      +      P   T   ++  L +++  
Sbjct: 128 PRRSALPS--VVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQG 185

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
               RLF+ +      PNVFT++ ++D LCK G   +A  L   M +    P++VTY++L
Sbjct: 186 GLVRRLFDLLPV----PNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSL 241

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           ++G  K G L+E  +++  M+  G   D   Y  +I+CF   G+ ++A ++  EM   G+
Sbjct: 242 IDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGV 301

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
             N +T+S       T V   CK      A +++  MR R +  +  TY+SL+   CK G
Sbjct: 302 VANVVTFS-------TFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 354

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            +  +  ++DE+V  G +P+  T++ ++  L    K+ +A  +L L
Sbjct: 355 RLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSL 400



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 1/279 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +   ++ +I      N    A DLL+++  +  ++   ++ ++  G  +  +  +A
Sbjct: 405 GVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEA 464

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  KM   G  P    Y T++  L +  +   A      + + G QP V +   LI  
Sbjct: 465 KSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDG 524

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +G++  A   F +M   G  P+   Y  LI+G C++G + +A  L  EM  K  S 
Sbjct: 525 LCK-AGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSL 583

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             V YTSLI+G  +  ++++A  L  +M   G++ +++ Y+  + G C      +A  +L
Sbjct: 584 DKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVL 643

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
             MI     P+   Y+ L+    K G ++EA  + + M+
Sbjct: 644 SEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEME 682



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 1/245 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D S +  +I  L    +   A+ LL ++          I+ +I     +  +  +A
Sbjct: 440 GMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEA 499

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  K+ + G +P   +Y  ++  L +   +  A   +  MRE+G+ P V +   LI  
Sbjct: 500 VALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDG 559

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G+++ A  +  EM ++G + D   Y +LI+G  +   + +A  L  +M       
Sbjct: 560 FCK-IGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQL 618

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +  YT  I+G C    ++EA  +  EM   G+ P+   Y+ L+    K G   +A  L 
Sbjct: 619 DLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQ 678

Query: 285 QMMIS 289
             M S
Sbjct: 679 NEMES 683



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 1/182 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +GF+ +  T+  +I  L  A     A    +++ +   D     + ++  G+ ++     
Sbjct: 509 SGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNK 568

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM + ++M + G       Y +++   +++  L+ AF     M E G+Q  +      I 
Sbjct: 569 AMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFIS 628

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C N   M  A  +  EM   G TPD   Y  LI    +LG + EA  L  EME+   S
Sbjct: 629 GFC-NMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESVLSS 687

Query: 224 PT 225
            T
Sbjct: 688 CT 689


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 200/372 (53%), Gaps = 10/372 (2%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           GY +      A R F++M   G  P    Y  ++    +E  +  AF  +R +    +  
Sbjct: 530 GYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ 589

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V + +VLI  L +N G M  AF IF E+  +G  P+++TY +LI+G C+ G + +A +L
Sbjct: 590 DVQTYSVLIHGLSRN-GKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQL 648

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            +EM  K  +P +VTY  LI+GLC++  +E A  LF+++  +G+ PN  TY++++DG CK
Sbjct: 649 LEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCK 708

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
               + A +LL+ M+ +   P+   Y+ +LN  CKE K ++A+++   M  +G       
Sbjct: 709 SKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS- 767

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAF 392
           +  +I  +C  GK QEA + L+EM+     PN +T++  I  HN      CK      A 
Sbjct: 768 FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID-HN------CKAGMMGEAK 820

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +++L M+ R++   + TY+SL+  +   G++ + + + +E+V  G  PD+ T+  ++ A 
Sbjct: 821 RLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAY 880

Query: 453 WDRRKMRQAAEL 464
                + +A +L
Sbjct: 881 CREGNVMEACKL 892



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 216/466 (46%), Gaps = 63/466 (13%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK----------------CDITED--IF 88
           + D    S +   L ++N + PA DL+  + +                  C+ + +  IF
Sbjct: 98  QQDLDVLSALAVNLCNSNWYGPASDLIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIF 157

Query: 89  LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
             +   Y ++   ++A+ VF   K F   P+  S  ++L  L++ N+++L ++ +  M  
Sbjct: 158 DMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCA 217

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDA----------------AFKIFREMPNRGCTPDSY 192
             + P V +   +I A CK     DA                A ++ R M ++G  PD Y
Sbjct: 218 HKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLY 277

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY  LING C   +  EAK +  EM      P  +TY +LI+G  +   +E+A R+ +EM
Sbjct: 278 TYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEM 337

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            + G+E N+  +++L++G+CK G   +A+E++Q M+ K   P+  TYS L+ G C+   +
Sbjct: 338 VACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNM 397

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
             A E+LD MK + L P    Y  II+  C  G  Q     L EMV+ G+ PN + ++  
Sbjct: 398 ARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTL 457

Query: 373 IRIH----------------------------NTVVQGLCKTDPNRAFQVYL-SMRNRSI 403
           +  H                            N+++ G CK       + YL  M  R +
Sbjct: 458 MTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRL 517

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
             ++ TY + I  + K G++  + R  +E++  G LP+ G ++A++
Sbjct: 518 RPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 563



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 199/400 (49%), Gaps = 31/400 (7%)

Query: 96  GRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           G   R LD A+ +   M + G  P   +Y  ++     E + + A      M ++G++P 
Sbjct: 251 GEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPE 310

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             + N LI    +  G ++ AF+I  EM   G   +   + TL+NG+C+ GK+ +A E+ 
Sbjct: 311 PITYNALIDGFMR-QGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIM 369

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           +EM  K   P   TY+ LI G C+ +++  A  L +EM+ + + P V TYS +++GLC+ 
Sbjct: 370 QEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRC 429

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G       +L+ M+    +PN V Y+TL+    KEG+++E+  IL+RM+ QG+ PD   Y
Sbjct: 430 GNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCY 489

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------------------- 374
             +I  FC   + +EA  +L EM+   + PN  T+   I                     
Sbjct: 490 NSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS 549

Query: 375 --------IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
                   I+  +++G CK  +   AF V+  + +R +  D  TYS LI    + G +H+
Sbjct: 550 CGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHE 609

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  I  EL   G LP+  T++++++    +  + +A++LL
Sbjct: 610 AFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLL 649



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 212/488 (43%), Gaps = 117/488 (23%)

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           T DI ++   G+    R  +A  +  +M + G +P P +Y  ++   + +  ++ AFR  
Sbjct: 278 TYDILIN---GFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIK 334

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M   GI+  +   N L+  +CK +G M+ A +I +EM  +G  PDS TY  LI G CR
Sbjct: 335 DEMVACGIEANLIIWNTLLNGVCK-AGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCR 393

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS---------------------- 241
              +  A EL  EM+ +  +PTV+TY+ +INGLC+  +                      
Sbjct: 394 GQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVV 453

Query: 242 -------------VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
                        VEE+  + E MR +G+ P+VF Y+SL+ G CK     +A   L  M+
Sbjct: 454 YTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEML 513

Query: 289 SKRHRPNIVTY-----------------------------------STLLNGLCKEG--- 310
            +R RPN  TY                                   + L+ G CKEG   
Sbjct: 514 ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVT 573

Query: 311 --------------------------------KLQEAVEILDRMKLQGLKPDAGLYGKII 338
                                           K+ EA  I   ++ +GL P+A  Y  +I
Sbjct: 574 EAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 633

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
           S  C  G   +A+  L+EM + GI P+ +T+       N ++ GLCK  +  RA  ++  
Sbjct: 634 SGSCKQGNVDKASQLLEEMCIKGINPDIVTY-------NILIDGLCKAGEIERAKNLFDD 686

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +  R ++ + +TY++++  +CK  +   + ++++E++L G  PD   ++ ++       K
Sbjct: 687 IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEK 746

Query: 458 MRQAAELL 465
             +A +L 
Sbjct: 747 FEKALDLF 754



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 143/290 (49%), Gaps = 13/290 (4%)

Query: 83  ITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
           +T +I +  +C+  G + R   A  +FD ++  G  P   +Y  ++    +      AF+
Sbjct: 662 VTYNILIDGLCKA-GEIER---AKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQ 717

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
               M   G+ P     NV++   CK     + A  +F+EM  +G    + ++ TLI G 
Sbjct: 718 LLEEMLLRGVPPDAFIYNVILNFCCKEE-KFEKALDLFQEMLEKGFA-STVSFNTLIEGY 775

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+ GK+ EA  L +EM  K   P  VTYTSLI+  C++  + EA RL+ EM+ + V P  
Sbjct: 776 CKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTA 835

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY+SL+ G    G  S+   L + M++K   P+ +TY  +++  C+EG + EA ++ D 
Sbjct: 836 KTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDE 895

Query: 322 MKLQGLKPDAGLYGKIISC------FCDIGKYQEAANFLDEMVLGGITPN 365
           + ++G+   +G    + +C      F   G   EAA  L  MV  G   N
Sbjct: 896 ILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSN 945



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 26/243 (10%)

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           RS    PN   +  LMD   K G   +A+ +     +   RP++++ ++LL  L K  K+
Sbjct: 146 RSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKV 205

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA----------ANFLDE------ 356
           +   ++ D M    + PD   Y  +IS  C +G  ++A          A  LDE      
Sbjct: 206 ELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKR 265

Query: 357 -MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLI 414
            MV  G+ P+  T+ +       ++ G C    +R A  + L M +  +  + +TY++LI
Sbjct: 266 SMVDKGLVPDLYTYDI-------LINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALI 318

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             F ++GDI ++ RI DE+V  G   +   W+ ++  +    KM +A E ++ E+M K V
Sbjct: 319 DGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALE-IMQEMMEKGV 377

Query: 475 EAE 477
           E +
Sbjct: 378 EPD 380



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 117/318 (36%), Gaps = 76/318 (23%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++++I  L  A +   A++L D +           + ++  GY +   P  A
Sbjct: 656 GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA 715

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++ ++M   G  P    Y  +L    +E + + A   ++ M E G    V S N LI+ 
Sbjct: 716 FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEG 774

Query: 165 LCKN----------------------------------SGTMDAAFKIFREMPNRGCTPD 190
            CK+                                  +G M  A +++ EM  R   P 
Sbjct: 775 YCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPT 834

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           + TY +L++G   +G + E   LF+EM  K   P  +TY  +I+  C+  +V EA +L +
Sbjct: 835 AKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKD 894

Query: 251 EMRSKGVE-----------------------------------------PNVFTYSSLMD 269
           E+  KG+                                           N  +   L+D
Sbjct: 895 EILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVD 954

Query: 270 GLCKGGCSSQAMELLQMM 287
           G   G  S  +  LL+ M
Sbjct: 955 GNQNGANSEDSDNLLKQM 972


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 229/479 (47%), Gaps = 35/479 (7%)

Query: 16  AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR 75
           +++++++   K VNKAL IF           R    T++ +I  L+         +L + 
Sbjct: 164 SEIVKILGRVKMVNKALSIFYQVKGRKC---RPTAGTYNSVILMLMQEGHHEKVHELYNE 220

Query: 76  VNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           +  E  C      + ++   +G+++R   A+R+FD+MKE G +PT K Y T++ I  +  
Sbjct: 221 MCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLG 280

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           +++ A      MR     P V +   LI+ L K SG ++ A+ +++ M   GC PD    
Sbjct: 281 KVEEALNLVHEMRMRRCVPTVYTYTELIRGLGK-SGRVEDAYGVYKNMLKDGCKPDVVLM 339

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRLFEEMR 253
             LIN L R  ++ EA ELF+EM    C+P VVTY ++I  L + K+   EA    E M+
Sbjct: 340 NNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMK 399

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             GV P+ FTYS L+DG CK     +A+ LL+ M  K   P    Y +L+N L K  + +
Sbjct: 400 KDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYE 459

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL-- 371
            A E+   +K         +Y  +I  F   G++ EA    +EM   G  P+   ++   
Sbjct: 460 AANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALI 519

Query: 372 --------------------------HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404
                                      I  HN ++ GL +T  P RA +++  M++ +I 
Sbjct: 520 TGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIK 579

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            D+++Y++++ C  + G   ++ +++ E+   G   D  T+S+++ A+    + R  AE
Sbjct: 580 PDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKVDEDRNMAE 638



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 233/498 (46%), Gaps = 35/498 (7%)

Query: 6   MFKWSTKITSA-QVLQL----------IRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW      A +VL+L          ++ + +V+  +  F  A  +    F HD++T+ 
Sbjct: 72  IFKWGPDAEKALEVLKLKLDIRLVREVLKIDVEVHVKIQFFKWAGKK--RNFEHDSTTYM 129

Query: 55  LMI-----SKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109
            +I     ++LV    +R  +D++    K  C I       I +  GRV     A+ +F 
Sbjct: 130 ALIRCLDENRLV-GELWRTIQDMV----KSPCAIGPSELSEIVKILGRVKMVNKALSIFY 184

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKN 168
           ++K   C PT  +Y +V+ +L++E   +     Y  M  E    P   + + LI A  K 
Sbjct: 185 QVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKL 244

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +   D+A ++F EM   G  P +  Y TL+    +LGK+ EA  L  EM  + C PTV T
Sbjct: 245 NRD-DSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYT 303

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT LI GL +S  VE+A  +++ M   G +P+V   ++L++ L +     +A+EL + M 
Sbjct: 304 YTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMR 363

Query: 289 SKRHRPNIVTYSTLLNGLCKE-GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                PN+VTY+T++  L ++     EA   L+RMK  G+ P +  Y  +I  FC   + 
Sbjct: 364 LLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRV 423

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDS 407
           ++A   L+EM   G  P    +   I   N++ +       N  FQ    ++    S   
Sbjct: 424 EKALLLLEEMDEKGFPPCPAAYCSLI---NSLGKAKRYEAANELFQ---ELKENCGSSSV 477

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
             Y+ +I  F K G  +++  + +E+   GC+PD   ++A++T +     M +A  L   
Sbjct: 478 RVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRT 537

Query: 468 ELMNKCVEAEVDIQNQDV 485
              N C     DI + ++
Sbjct: 538 MEENGC---NPDINSHNI 552


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 185/379 (48%), Gaps = 9/379 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  I     +V R    + +  KM  FG      +   ++      N++  AF     + 
Sbjct: 77  FAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKIL 136

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           ++G QP  AS   LIK LC   G +  A  +F +M   G  PD   Y TLINGLC+ G  
Sbjct: 137 KLGCQPDTASFTTLIKGLCL-EGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHT 195

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A  L + ME   C P VV Y +LI+ LC+ +   +A  LF EM +KG+ PN+ T +SL
Sbjct: 196 SAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSL 255

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +  LC  G       LL  M+  +  PN ++ +T+++ LCKEG + +A +++D M   G+
Sbjct: 256 VYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGV 315

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           +PD   Y  +I   C   +  EA    D MV  G  PN  ++       NT++ G CK +
Sbjct: 316 EPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSY-------NTLINGYCKIE 368

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             ++A  ++  M  + +  +++TY++LI   C  G +  +  +  E+V  G +PD  T+ 
Sbjct: 369 RMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYR 428

Query: 447 AVMTALWDRRKMRQAAELL 465
            ++  L     + +A  LL
Sbjct: 429 ILLDYLCKNCHLDKAMALL 447



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 210/422 (49%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D ++F+ +I  L    Q   A  L D++  E       I+ ++  G  +      A
Sbjct: 139 GCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAA 198

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M++  C+P    Y T++  L ++ Q   AF  +  M   GI P + + N L+ A
Sbjct: 199 IRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYA 258

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N G       +  EM +    P++ +  T+++ LC+ G + +A ++   M      P
Sbjct: 259 LC-NLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEP 317

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+LI+G C    ++EA+++F+ M  KG  PNVF+Y++L++G CK     +AM L 
Sbjct: 318 DVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLF 377

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  ++  PN VTY+TL++GLC  G+LQ+A+ +   M   G  PD   Y  ++   C  
Sbjct: 378 EEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKN 437

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
               +A   L  +    + P+       I+I+  V+ G+C+  +   A  ++ ++ ++ +
Sbjct: 438 CHLDKAMALLKAIEGSNLDPD-------IQIYTIVIDGMCRAGELEDARDLFSNLSSKGL 490

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TY+ +    CK+G + ++ ++  E+  + C  D  T++ +        +  +A +
Sbjct: 491 KPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQ 550

Query: 464 LL 465
           LL
Sbjct: 551 LL 552



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 214/496 (43%), Gaps = 79/496 (15%)

Query: 6   MFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           + K   +  +A    LI+    E  + +AL +FD    E   GF+ D   ++ +I+ L  
Sbjct: 135 ILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWE---GFQPDVVIYATLINGLCK 191

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT--- 119
                 A  LL  + K  C     ++ ++     +  +   A  +F +M   G  P    
Sbjct: 192 TGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVT 251

Query: 120 ------------------------------PK--SYITVLAILVEENQLKLAFRFYRHMR 147
                                         P   S  TV+  L +E  +  A      M 
Sbjct: 252 CNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMF 311

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + G++P V +   LI   C  S  MD A K+F  M ++GC P+ ++Y TLING C++ ++
Sbjct: 312 QSGVEPDVVTYTALIDGHCLRS-EMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERM 370

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  LF+EM  +   P  VTY +LI+GLC    +++A+ LF EM + G  P++ TY  L
Sbjct: 371 DKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRIL 430

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +D LCK     +AM LL+ +      P+I  Y+ +++G+C+ G+L++A ++   +  +GL
Sbjct: 431 LDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGL 490

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KP+   Y  +    C  G   EA     EM     + +  T+       NT+ QG  + +
Sbjct: 491 KPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTY-------NTITQGFLRNN 543

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLI-----------------------------TCF 417
             +RA Q+   M  R  S D  T + L+                             T F
Sbjct: 544 ETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDDGLDQSEAHKLEDMFPHLRIQVKDTVF 603

Query: 418 CKKGDIHKSARIVDEL 433
           CK+ DI+   +++ +L
Sbjct: 604 CKEDDINALGKVISDL 619



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 148/304 (48%), Gaps = 8/304 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T+D A   F  M +    P    +  ++  + ++ +      L ++M++      V T  
Sbjct: 54  TLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLN 113

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN  C    V  A  +  ++   G +P+  ++++L+ GLC  G   +A+ L   MI +
Sbjct: 114 VLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWE 173

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +P++V Y+TL+NGLCK G    A+ +L  M+    +PD  +YG +I   C   +  +A
Sbjct: 174 GFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQA 233

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
            N   EM+  GI+PN +T        N++V  LC     +     L+ M +  I  ++++
Sbjct: 234 FNLFSEMITKGISPNIVTC-------NSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAIS 286

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
            ++++   CK+G + ++  +VD +   G  PD  T++A++     R +M +A ++  + +
Sbjct: 287 LTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMV 346

Query: 470 MNKC 473
              C
Sbjct: 347 HKGC 350


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 181/333 (54%), Gaps = 9/333 (2%)

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           Q+  +F     + ++G QP   +LN L+K LC   G +  +     ++  +G   D  +Y
Sbjct: 60  QMAFSFSVLGKILKLGYQPDTITLNTLMKGLCL-KGEVKKSLHFHDKVVAQGFQMDHVSY 118

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
           GTL+NGLC++G+   A +L + +E ++  P VV Y ++I+GLC+ K V EA  L+ EM +
Sbjct: 119 GTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDA 178

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           +G+ P+  TY++L+ G C  G    A  LL  MI K   P +  Y+ L+N LCKEG ++E
Sbjct: 179 RGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKE 238

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A  +L  M  +G+KP    Y  ++  +C +G+ Q A      MV  G+ PN  ++     
Sbjct: 239 AKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSY----- 293

Query: 375 IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             N ++ GLCK    + A  +   M ++++  D++TY+SLI   CK G I  +  +++E+
Sbjct: 294 --NIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEM 351

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
              G   D  T+++++ AL   + + +A  L +
Sbjct: 352 HHRGQPADVVTYTSLLDALCKNQNLDKATALFM 384



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 183/350 (52%), Gaps = 9/350 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           ++   DK+   G +    SY T+L  L +  + + A +  R + +   +P V   N +I 
Sbjct: 99  SLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIID 158

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK+   ++ A+ ++ EM  RG  PD+ TY TLI G C LG++  A  L  EM  K  +
Sbjct: 159 GLCKDK-LVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNIN 217

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V  Y  LIN LC+  +V+EA  L   M  +G++P V TYS+LMDG C  G    A ++
Sbjct: 218 PGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQI 277

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M+     PN+ +Y+ ++NGLCK  ++ EA+ +L  M  + + PD   Y  +I   C 
Sbjct: 278 FHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCK 337

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G+   A N ++EM   G   + +T++       +++  LCK  + ++A  +++ M+ R 
Sbjct: 338 SGRITSALNLMNEMHHRGQPADVVTYT-------SLLDALCKNQNLDKATALFMKMKERG 390

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           I     TY++LI   CK G +  +  +   L++ GC  D  T++ +++ L
Sbjct: 391 IQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGL 440



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 221/447 (49%), Gaps = 16/447 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ D  T + ++  L    + + +    D+V  +   +    + ++  G  ++     A
Sbjct: 75  GYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCA 134

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++   +++    P    Y T++  L ++  +  A+  Y  M   GI P   +   LI  
Sbjct: 135 VKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYG 194

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  AF +  EM  +   P  Y Y  LIN LC+ G + EAK L   M  +   P
Sbjct: 195 FCL-LGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKP 253

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY++L++G C    V+ A ++F  M   GV PNV++Y+ +++GLCK     +AM LL
Sbjct: 254 GVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLL 313

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+ K   P+ VTY++L++GLCK G++  A+ +++ M  +G   D   Y  ++   C  
Sbjct: 314 REMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKN 373

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
               +A     +M   GI P   T++        ++ GLCK      A +++  +  +  
Sbjct: 374 QNLDKATALFMKMKERGIQPTMYTYT-------ALIDGLCKGGRLKNAQELFQHLLVKGC 426

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            +D  TY+ +I+  CK+G   ++  I  ++  +GC+P+  T+  ++ +L+++ +    AE
Sbjct: 427 CIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDE-NDKAE 485

Query: 464 LLLLELMNKCV------EAEVDIQNQD 484
            LL E++ K +       A+V +QN++
Sbjct: 486 KLLHEMIAKGLLVLDFKVADVFVQNEN 512



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 188/371 (50%), Gaps = 9/371 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +  V  K+ + G +P   +  T++  L  + ++K +  F+  +   G Q    S   L+ 
Sbjct: 64  SFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLN 123

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G    A K+ R + +R   P+   Y T+I+GLC+   + EA +L+ EM+ +   
Sbjct: 124 GLCK-IGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIF 182

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  +TYT+LI G C    +  A  L +EM  K + P V+ Y+ L++ LCK G   +A  L
Sbjct: 183 PDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNL 242

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M  +  +P +VTYSTL++G C  G++Q A +I   M   G+ P+   Y  +I+  C 
Sbjct: 243 LAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCK 302

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             +  EA N L EM+   + P+ +T+       N+++ GLCK+     A  +   M +R 
Sbjct: 303 CKRVDEAMNLLREMLHKNMVPDTVTY-------NSLIDGLCKSGRITSALNLMNEMHHRG 355

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              D +TY+SL+   CK  ++ K+  +  ++   G  P   T++A++  L    +++ A 
Sbjct: 356 QPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQ 415

Query: 463 ELLLLELMNKC 473
           EL    L+  C
Sbjct: 416 ELFQHLLVKGC 426



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 182/338 (53%), Gaps = 4/338 (1%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K VN+A   +D  +   A G   D  T++ +I       Q   A  LLD +  +  +  
Sbjct: 163 DKLVNEA---YDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPG 219

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
             I+  +     +     +A  +   M + G +P   +Y T++       +++ A + + 
Sbjct: 220 VYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFH 279

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M ++G+ P V S N++I  LCK    +D A  + REM ++   PD+ TY +LI+GLC+ 
Sbjct: 280 AMVQMGVNPNVYSYNIMINGLCK-CKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKS 338

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G+I  A  L  EM  +     VVTYTSL++ LC+++++++A  LF +M+ +G++P ++TY
Sbjct: 339 GRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTY 398

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           ++L+DGLCKGG    A EL Q ++ K    ++ TY+ +++GLCKEG   EA+ I  +M+ 
Sbjct: 399 TALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMED 458

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
            G  P+A  +  II    +  +  +A   L EM+  G+
Sbjct: 459 NGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 496



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 139/314 (44%), Gaps = 43/314 (13%)

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           TP    +  ++  L ++ +   A  L K+ME K      VT   LIN  C    +  +  
Sbjct: 7   TPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFS 66

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +  ++   G +P+  T ++LM GLC  G   +++     ++++  + + V+Y TLLNGLC
Sbjct: 67  VLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLC 126

Query: 308 KEGK-----------------------------------LQEAVEILDRMKLQGLKPDAG 332
           K G+                                   + EA ++   M  +G+ PDA 
Sbjct: 127 KIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAI 186

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRA 391
            Y  +I  FC +G+   A + LDEM+L  I P        + I+N ++  LCK  +   A
Sbjct: 187 TYTTLIYGFCLLGQLMGAFSLLDEMILKNINPG-------VYIYNILINALCKEGNVKEA 239

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             +   M    I    +TYS+L+  +C  G++  + +I   +V  G  P+  +++ ++  
Sbjct: 240 KNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMING 299

Query: 452 LWDRRKMRQAAELL 465
           L   +++ +A  LL
Sbjct: 300 LCKCKRVDEAMNLL 313



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 64/243 (26%)

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+  RH P I+ ++ +L  L K  +   A+ +  +M+++G++ +      +I+CFC +G+
Sbjct: 1   MLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQ 60

Query: 347 YQEAANFLDEMVLGGITPNRLTW---------------SLHIR-------------IHNT 378
              + + L +++  G  P+ +T                SLH                + T
Sbjct: 61  MAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGT 120

Query: 379 VVQGLCK------------------TDP------------------NRAFQVYLSMRNRS 402
           ++ GLCK                  T P                  N A+ +Y  M  R 
Sbjct: 121 LLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  D++TY++LI  FC  G +  +  ++DE++L    P    ++ ++ AL     +++A 
Sbjct: 181 IFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAK 240

Query: 463 ELL 465
            LL
Sbjct: 241 NLL 243


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/406 (31%), Positives = 193/406 (47%), Gaps = 8/406 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   +  T+  +I        F  A  L D + ++K   T  I+  + RG     R  
Sbjct: 186 ARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRIS 245

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +F  M+  G  P   +Y T++    +   +K A   Y  M   G+ P V +  +LI
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILI 305

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +  M +A K   +M + G  P+ + Y  LI+G C+ G + EA  L  E+E    
Sbjct: 306 DGLCK-TDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEI 364

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TY+ LI GLC    +EEA  L +EM+ KG  PN  TY++L+DG CK G   +A+E
Sbjct: 365 LPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIE 424

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   M  K   PNI+T+STL++G CK GK++ A+ +   M ++GL PD   Y  +I    
Sbjct: 425 VCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHF 484

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHI-------RIHNTVVQGLCKTDPNRAFQVY 395
             G  +EA     EM   G+ PN  T S  I       RI + +   L KT  +      
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKT 544

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
             +     S + + Y++LI   C  G I K+++   ++   G  PD
Sbjct: 545 NELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPD 590



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 187/375 (49%), Gaps = 33/375 (8%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           TP  +  ++    E   ++ A   Y  M    + P + + N+++  L K  G  D  +K+
Sbjct: 125 TPNVFGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKK-GRFDTMWKV 180

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           + +M  RG +P+  TYGTLI+G CR G   +A  LF EM  K   PTVV YT LI GLC 
Sbjct: 181 YGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCG 240

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
              + EA  +F  MR+ G+ PN++TY+++MDG CK     +A+EL   M+     PN+VT
Sbjct: 241 ESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVT 300

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           +  L++GLCK  ++  A + L  M   G+ P+  +Y  +I  +C  G   EA +   E+ 
Sbjct: 301 FGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIE 360

Query: 359 LGGITPNRLTWSLHIR----------------------------IHNTVVQGLCKT-DPN 389
              I P+  T+S+ I+                             +NT++ G CK  +  
Sbjct: 361 KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNME 420

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A +V   M  + I  + +T+S+LI  +CK G +  +  +  E+V+ G LPD   ++A++
Sbjct: 421 KAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480

Query: 450 TALWDRRKMRQAAEL 464
              +     ++A  L
Sbjct: 481 DGHFKDGNTKEAFRL 495



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 147/293 (50%), Gaps = 13/293 (4%)

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
           + F +   + +   TP+   +G LI     +G + EA  ++ +M+     P +     ++
Sbjct: 111 SVFNVLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVL 165

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +GL +    +   +++ +M ++G  PNV TY +L+DG C+ G   +A  L   MI K+  
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF 225

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P +V Y+ L+ GLC E ++ EA  +   M+  G+ P+   Y  ++  +C I   ++A   
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALEL 285

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSS 412
             EM+  G+ PN +T+ +       ++ GLCKTD   + + +L  M +  +  +   Y+ 
Sbjct: 286 YXEMLGDGLLPNVVTFGI-------LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNC 338

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           LI  +CK G++ ++  +  E+     LPD  T+S ++  L    +M +A  LL
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 141/301 (46%), Gaps = 20/301 (6%)

Query: 79  EKCDITEDIFLS--ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           EK +I  D+F    + +G   V R  +A  +  +MK+ G  P   +Y T++    +E  +
Sbjct: 360 EKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNM 419

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           + A      M E GI+P + + + LI   CK +G M+AA  ++ EM  +G  PD   Y  
Sbjct: 420 EKAIEVCSQMTEKGIEPNIITFSTLIDGYCK-AGKMEAAMGLYTEMVIKGLLPDVVAYTA 478

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF------- 249
           LI+G  + G   EA  L KEM+     P V T + LI+GLC+   + +A++LF       
Sbjct: 479 LIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD 538

Query: 250 ------EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
                  E+      PN   Y++L+ GLC  G   +A +    M     RP++ T   ++
Sbjct: 539 TTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVII 598

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
            G  +   L++ + +   +   G+ P++ +Y  +   + + G  + A +F  E    G+ 
Sbjct: 599 QGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGE----GVQ 654

Query: 364 P 364
           P
Sbjct: 655 P 655



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 14/252 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +  T++ +I           A ++  ++ ++  +     F ++  GY +  +   A
Sbjct: 398 GFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAA 457

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M ++ +M   G  P   +Y  ++    ++   K AFR ++ M+E G+ P V +L+ LI  
Sbjct: 458 MGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDG 517

Query: 165 LCKNSGTMDAAFKIF-------------REMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           LCK+ G +  A K+F              E+    C+P+   Y  LI GLC  G+I++A 
Sbjct: 518 LCKD-GRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKAS 576

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           + F +M      P V T   +I G  ++  + + M L  ++   G+ PN   Y  L  G 
Sbjct: 577 KFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGY 636

Query: 272 CKGGCSSQAMEL 283
            + G    A+  
Sbjct: 637 EESGYLKSALSF 648



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 13/220 (5%)

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +   + S    PNVF    L+    + G   +A+ +   M      P +   + +L+GL 
Sbjct: 115 VLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWVYYKMDV---LPAMQACNMVLDGLV 169

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K+G+     ++   M  +G  P+   YG +I   C  G + +A    DEM+   I P  +
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
            +++ IR       GLC ++  + A  ++ +MRN  +  +  TY++++  +CK   + K+
Sbjct: 230 IYTILIR-------GLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
             +  E++ DG LP+  T+  ++  L    +M  A + L+
Sbjct: 283 LELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLI 322



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 25/213 (11%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A + +R M+    QP + ++ V + A C + G +D    I   + +RG   D     +LI
Sbjct: 733 ALQLFRQMQMDDXQPDIVTVTVALSA-CADLGALDMGEWIHAYIRHRGLDTDLCLNNSLI 791

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR----- 253
           N   + G+I  A+ LF   + K     V T+TS+I G       EEA++LF EM+     
Sbjct: 792 NMYSKCGEIGTARRLFDGTQKK----DVTTWTSMIVGHALHGQAEEALQLFTEMKETNKR 847

Query: 254 -----------SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYST 301
                      S  V PN  T+  ++      G   +  +  + M      RP I  +  
Sbjct: 848 ARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGC 907

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           +++ LC+ G L EA E + +M    ++P+A ++
Sbjct: 908 MVDLLCRAGLLTEAYEFILKMP---VRPNAVVW 937



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 27/230 (11%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
            RP  A+++F +M+    +P   +    L+   +   L +    + ++R  G+   +   
Sbjct: 728 QRPNKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLN 787

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM- 217
           N LI    K  G +  A ++F     +    D  T+ ++I G    G+  EA +LF EM 
Sbjct: 788 NSLINMYSK-CGEIGTARRLFDGTQKK----DVTTWTSMIVGHALHGQAEEALQLFTEMK 842

Query: 218 ---------------ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNV 261
                          E+    P  VT+  ++     +  VEE  + F  M+    + P +
Sbjct: 843 ETNKRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRI 902

Query: 262 FTYSSLMDGLCKGGCSSQAME-LLQMMISKRHRPNIVTYSTLLNGLCKEG 310
             +  ++D LC+ G  ++A E +L+M +    RPN V + TLL     +G
Sbjct: 903 SHFGCMVDLLCRAGLLTEAYEFILKMPV----RPNAVVWRTLLGACSLQG 948



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 24/214 (11%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           + A ++FR+M      PD  T    ++    LG +   + +   +  +     +    SL
Sbjct: 731 NKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSL 790

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM--ISK 290
           IN   +   +  A RLF+  + K    +V T++S++ G    G + +A++L   M   +K
Sbjct: 791 INMYSKCGEIGTARRLFDGTQKK----DVTTWTSMIVGHALHGQAEEALQLFTEMKETNK 846

Query: 291 RHR--------------PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-GLKPDAGLYG 335
           R R              PN VT+  +L      G ++E  +    MK    L+P    +G
Sbjct: 847 RARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFG 906

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
            ++   C  G   EA  F+ +M    + PN + W
Sbjct: 907 CMVDLLCRAGLLTEAYEFILKM---PVRPNAVVW 937


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 199/390 (51%), Gaps = 28/390 (7%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE---------- 148
           H+   ++  F K+ + G +P   ++ T+L  L  E+++  A   + +M E          
Sbjct: 155 HKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALF 214

Query: 149 -----IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
                IG+ P V + N LI  LC     ++AA  +  +M  +G   D  TYGT++NG+C+
Sbjct: 215 DQMVEIGLTPVVITFNTLINGLCLEGRVLEAA-ALVNKMVGKGLHIDVVTYGTIVNGMCK 273

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
           +G    A  L  +ME     P VV Y+++I+ LC+     +A  LF EM  KG+ PNVFT
Sbjct: 274 MGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFT 333

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y+ ++DG C  G  S A  LL+ MI +   P+++T++ L++   KEGKL EA ++ D M 
Sbjct: 334 YNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEML 393

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            + + PD   Y  +I  FC   ++ +A +  D M     +P+ +T+       NT++   
Sbjct: 394 HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTF-------NTIIDVY 442

Query: 384 CKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C+    +   Q+   +  R +  ++ TY++LI  FC+  +++ +  +  E++  G  PD 
Sbjct: 443 CRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDT 502

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNK 472
            T + ++    +  K+ +A EL  +  M+K
Sbjct: 503 ITCNILLYGFCENEKLEEALELFEVIQMSK 532



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 205/424 (48%), Gaps = 13/424 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             G   D  T+  +++ +      + A +LL ++ +        I+ +I     +     
Sbjct: 254 GKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 313

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F +M E G  P   +Y  ++       +   A R  R M E  I P V + N LI
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  K  G +  A K+  EM +R   PD+ TY ++I G C+  +  +AK +F  M     
Sbjct: 374 SASVK-EGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----A 428

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP VVT+ ++I+  C++K V+E M+L  E+  +G+  N  TY++L+ G C+    + A +
Sbjct: 429 SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 488

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L Q MIS    P+ +T + LL G C+  KL+EA+E+ + +++  +  D   Y  II   C
Sbjct: 489 LFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMC 548

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
              K  EA +    + + G+ P+       ++ +N ++ G C K+  + A  ++  M++ 
Sbjct: 549 KGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMISGFCGKSAISDANVLFHKMKDN 601

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D+ TY++LI    K G+I KS  ++ E+  +G   D  T   V   + D R  +  
Sbjct: 602 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRLDKSF 661

Query: 462 AELL 465
           +++L
Sbjct: 662 SDML 665



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 181/378 (47%), Gaps = 26/378 (6%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  FD M       T      V+ + V  N+  +A   YR M    I   + S N+LI
Sbjct: 89  DAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI--------------- 207
           K  C +   +  +   F ++   G  PD  T+ TL++GLC   +I               
Sbjct: 149 KCFC-DCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGF 207

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  LF +M     +P V+T+ +LINGLC    V EA  L  +M  KG+  +V TY ++
Sbjct: 208 LEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI 267

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++G+CK G +  A+ LL  M     +P++V YS +++ LCK+G   +A  +   M  +G+
Sbjct: 268 VNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGI 327

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            P+   Y  +I  FC  G++ +A   L +M+   I P+ LT++    I  +V +G     
Sbjct: 328 APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFN--ALISASVKEG----K 381

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
              A ++   M +R I  D++TY+S+I  FCK      +  + D +      PD  T++ 
Sbjct: 382 LFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNT 437

Query: 448 VMTALWDRRKMRQAAELL 465
           ++      +++ +  +LL
Sbjct: 438 IIDVYCRAKRVDEGMQLL 455



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 183/367 (49%), Gaps = 13/367 (3%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R L+A  + +KM   G      +Y T++  + +    K A      M E  I+P V   +
Sbjct: 241 RVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYS 300

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I  LCK+    DA + +F EM  +G  P+ +TY  +I+G C  G+  +A+ L ++M  
Sbjct: 301 AIIDRLCKDGHHSDAQY-LFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE 359

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +  +P V+T+ +LI+   +   + EA +L +EM  + + P+  TY+S++ G CK      
Sbjct: 360 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 419

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  +  +M S    P++VT++T+++  C+  ++ E +++L  +  +GL  +   Y  +I 
Sbjct: 420 AKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 475

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
            FC++     A +   EM+  G+ P+ +T        N ++ G C+ +    A +++  +
Sbjct: 476 GFCEVDNLNAAQDLFQEMISHGVCPDTITC-------NILLYGFCENEKLEEALELFEVI 528

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           +   I +D++ Y+ +I   CK   + ++  +   L + G  PD  T++ +++    +  +
Sbjct: 529 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAI 588

Query: 459 RQAAELL 465
             A  L 
Sbjct: 589 SDANVLF 595



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 146/294 (49%), Gaps = 24/294 (8%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +I    R+ +   A  L+++ME +     + ++  LI   C    +  ++  F ++   G
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH---------------RPNIVTYST 301
            +P+V T+++L+ GLC     S+A+ L   M+                    P ++T++T
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNT 231

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L+NGLC EG++ EA  ++++M  +GL  D   YG I++  C +G  + A N L +M    
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKK 420
           I P+       + I++ ++  LCK   +   Q   S M  + I+ +  TY+ +I  FC  
Sbjct: 292 IKPD-------VVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSF 344

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           G    + R++ +++     PD  T++A+++A     K+ + AE L  E++++C+
Sbjct: 345 GRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFE-AEKLCDEMLHRCI 397



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 1/240 (0%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           FD A   +      D  TF+ +I     A +      LL  +++         + ++  G
Sbjct: 417 FDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHG 476

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           +  V     A  +F +M   G  P   +   +L    E  +L+ A   +  ++   I   
Sbjct: 477 FCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLD 536

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             + N++I  +CK S  +D A+ +F  +P  G  PD  TY  +I+G C    I +A  LF
Sbjct: 537 TVAYNIIIHGMCKGS-KVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLF 595

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            +M+     P   TY +LI G  ++  +++++ L  EMRS G   + FT   + D +  G
Sbjct: 596 HKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDG 655


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/476 (27%), Positives = 232/476 (48%), Gaps = 41/476 (8%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNST---FSLMISKLVSANQFR 67
           T +  + +++++   K ++KA+ IF      Y    R    T   ++ MI  L+   Q+ 
Sbjct: 154 TPMELSDIIRMLGNAKMISKAVAIF------YQIKVRKCQPTAQAYNSMIIMLMHEGQYE 207

Query: 68  PAEDLLDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
              +L + ++ E  C      + ++   + ++ R   A+R+ ++MK+ G +PT K Y  +
Sbjct: 208 KVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTML 267

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           +A+  + N +  A   +  MR    +P V +   LI+ L K +G  D A+  F EM   G
Sbjct: 268 IALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGK-AGRFDEAYNFFHEMRREG 326

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEA 245
           C PD+     +IN L + G++ +A +LF+EM T  C P+VVTY ++I  L +SKS + E 
Sbjct: 327 CRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEI 386

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
              FE M+  G+ P+ FTYS L+DG CK   + +AM LL+ M  K   P    Y +L++ 
Sbjct: 387 SSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDA 446

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           L K  +   A E+   +K       A +Y  +I      G+  +A N  DEM   G TPN
Sbjct: 447 LGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPN 506

Query: 366 RLTWSL----------------------------HIRIHNTVVQGLCKT-DPNRAFQVYL 396
              ++                              I  +N ++ GL KT  P+RA ++  
Sbjct: 507 VYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLS 566

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +M+  +I  D+++Y++++      G   ++A+++ E+ + G   D  T+S+++ A+
Sbjct: 567 NMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAI 622



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 169/379 (44%), Gaps = 42/379 (11%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG +     ++++I+     N    A  L + +  + C      +  + RG G+  R  +
Sbjct: 255 NGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDE 314

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A   F +M+  GC P       ++  L +  +L  A + +  M  +   P V + N +IK
Sbjct: 315 AYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIK 374

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL ++   +      F  M   G +P  +TY  LI+G C+  +  +A  L +EM+ K   
Sbjct: 375 ALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFP 434

Query: 224 PTVVTYTSLINGLCQSK-----------------------------------SVEEAMRL 248
           P    Y SLI+ L ++K                                    +++A+ L
Sbjct: 435 PCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNL 494

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F+EM   G  PNV+ Y++LM GL + G   +A+  ++ M      P+I +Y+ +LNGL K
Sbjct: 495 FDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAK 554

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G    A+E+L  MK   +KPDA  Y  ++      G ++EAA  + EM + G   + +T
Sbjct: 555 TGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLIT 614

Query: 369 WSLHIRIHNTVVQGLCKTD 387
           +S       ++++ + K D
Sbjct: 615 YS-------SILEAIGKVD 626



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 204/497 (41%), Gaps = 95/497 (19%)

Query: 6   MFKWST-----------KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW             K+    V ++++ +  VN  +  F  A  +    + HD ST+ 
Sbjct: 66  IFKWGPDAEKALEVLMLKVDHWLVREVMKTDVGVNVKMQFFRWAAKK--RNYEHDTSTYM 123

Query: 55  LMISKLVSANQFRPAEDLL-DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
            +I  L    Q+     ++ + V    C +T      I R  G       A+ +F ++K 
Sbjct: 124 ALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKV 183

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
             C+PT ++Y +++ +L+ E Q       Y  + E+                        
Sbjct: 184 RKCQPTAQAYNSMIIMLMHEGQ-------YEKVHEL------------------------ 212

Query: 174 AAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
                + EM N G C PD+ TY  LI+  C+LG+   A  L  EM+     PT   YT L
Sbjct: 213 -----YNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTML 267

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I    +  +V  A+ LFEEMR +   P+VFTY+ L+ GL K G   +A      M  +  
Sbjct: 268 IALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGC 327

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII-SCFCDIGKYQEAA 351
           RP+ V  + ++N L K G+L +AV++ + M      P    Y  II + F    +  E +
Sbjct: 328 RPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEIS 387

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR--------------------- 390
           ++ + M   GI+P+  T+S+       ++ G CKT+                        
Sbjct: 388 SWFERMKGSGISPSPFTYSI-------LIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAY 440

Query: 391 ---------------AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
                          A +++  ++    S  +  Y+ +I    K G +  +  + DE+  
Sbjct: 441 CSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNK 500

Query: 436 DGCLPDEGTWSAVMTAL 452
            GC P+   ++A+M+ L
Sbjct: 501 LGCTPNVYAYNALMSGL 517



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 11/309 (3%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTV 226
           N+  +  A  IF ++  R C P +  Y ++I  L   G+  +  EL+ EM  +  C P  
Sbjct: 167 NAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDT 226

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VTY++LI+  C+    + A+RL  EM+  G++P    Y+ L+    K      A+ L + 
Sbjct: 227 VTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEE 286

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M  +  RP++ TY+ L+ GL K G+  EA      M+ +G +PD  +   +I+     G+
Sbjct: 287 MRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGR 346

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL--CKTDPNRAFQVYLSMRNRSIS 404
             +A    +EM      P+ +T+       NT+++ L   K+  +     +  M+   IS
Sbjct: 347 LDDAVKLFEEMGTLQCIPSVVTY-------NTIIKALFESKSRISEISSWFERMKGSGIS 399

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
               TYS LI  FCK     K+  +++E+   G  P    + +++ AL   ++   A E 
Sbjct: 400 PSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHE- 458

Query: 465 LLLELMNKC 473
           L  EL   C
Sbjct: 459 LFQELKENC 467



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG---ITPNRLTWSLHIRIHNTV 379
           K +  + D   Y  +I C   + +Y E    + EMV      +TP  L+  + +  +  +
Sbjct: 111 KKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKM 170

Query: 380 VQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-C 438
           +        ++A  ++  ++ R     +  Y+S+I     +G   K   + +E+  +G C
Sbjct: 171 I--------SKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHC 222

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
            PD  T+SA+++A     +   A  LL
Sbjct: 223 FPDTVTYSALISAFCKLGRQDSAIRLL 249


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/414 (30%), Positives = 207/414 (50%), Gaps = 27/414 (6%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLD-RVNKEKCDITEDIFLSI--CRGY------- 95
           FRH   T+  MI  L +      A+ L+   V+++  D    +F +I   +G        
Sbjct: 9   FRHTLHTYCTMIHFLCTHQMLLEAKSLIRIVVSRKGKDSASAVFAAILGTKGTQRSDIYV 68

Query: 96  --GRVHRPLDAMRVFDKMKEFGCEPTPKSYI------TVLAILVEENQLKLAFRFYRHMR 147
             G +   L++  V D ++ F      K ++       VL  L++    KL + FY+ + 
Sbjct: 69  FSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEIL 128

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G    +   N+++   CK  G M  A  +F  +   G  P   ++ TL+NG  RLG +
Sbjct: 129 ECGYPASLYFFNIVMHRFCKE-GEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDL 187

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            E   L   M      P V TY+ LINGLC+   V+EA  LF EM  +G+ PN  T+++L
Sbjct: 188 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTL 247

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +D  CK G    AME+ + M+S+   P+++TY+TL+ GLCK+G L++   ++D M + GL
Sbjct: 248 IDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGL 307

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KPD   Y  +I   C  G  + A  F   M+   I  + + ++        +V GLC+  
Sbjct: 308 KPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYT-------ALVSGLCQEG 360

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
             + A +++  M +  +  D+ TY+ +I  FCKKGD+  ++R++ E+  DG +P
Sbjct: 361 RADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 158/292 (54%), Gaps = 8/292 (2%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
            +  ++E+   G     Y +  +++  C+ G++  A+ +F  +      P+VV++ +L+N
Sbjct: 120 VWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMN 179

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G  +   ++E  RL   M + GV+P+V+TYS L++GLCK     +A EL   M+ +   P
Sbjct: 180 GYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVP 239

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N VT++TL++  CK G +  A+EI  +M  QG  PD   Y  +I   C  G  ++    +
Sbjct: 240 NGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALI 299

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413
           DEM + G+ P+++T++       T++ G CK  D   AF+    M   SI +D++ Y++L
Sbjct: 300 DEMSMNGLKPDKITYT-------TLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTAL 352

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++  C++G    + ++  E++  G  PD GT++ ++     +  +R A+ LL
Sbjct: 353 VSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLL 404



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 131/281 (46%), Gaps = 36/281 (12%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +     + R A+ + D + K     +   F ++  GY R+    +  R+   M 
Sbjct: 139 FNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M + G+ P   +   LI   CKN G +
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKN-GMV 257

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D+A +I+++M ++G +PD  TY TLI GLC+ G + + + L  EM      P  +TYT+L
Sbjct: 258 DSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTL 317

Query: 233 I-----------------------------------NGLCQSKSVEEAMRLFEEMRSKGV 257
           I                                   +GLCQ    ++A ++F EM S G+
Sbjct: 318 IDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGL 377

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +P+  TY+ +++  CK G    A  LL+ M    H P +VT
Sbjct: 378 KPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 144/307 (46%), Gaps = 11/307 (3%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCT--PDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           LI+ +    G  D+A  +F  +     T   D Y +  L+      G +++A + F+  +
Sbjct: 35  LIRIVVSRKGK-DSASAVFAAILGTKGTQRSDIYVFSGLMTAYLESGFVHDAIQCFRLTK 93

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                    T   ++  L + K  +     ++E+   G   +++ ++ +M   CK G   
Sbjct: 94  KHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMR 153

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A  +   +     RP++V+++TL+NG  + G L E   +   M   G++PD   Y  +I
Sbjct: 154 RAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLI 213

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
           +  C   K  EA    +EM+  G+ PN +T++  I +H       CK    + A ++Y  
Sbjct: 214 NGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVH-------CKNGMVDSAMEIYKQ 266

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M ++  S D +TY++LI   CKKGD+ +   ++DE+ ++G  PD+ T++ ++        
Sbjct: 267 MLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGD 326

Query: 458 MRQAAEL 464
           +  A E 
Sbjct: 327 LETAFEF 333


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 220/452 (48%), Gaps = 31/452 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICRGYGRVHR 100
           G   + S F+ ++    +A  +  A  LL+R+    C    +  +IF+ SIC G      
Sbjct: 339 GCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSP 398

Query: 101 PLDAM--RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
            L A+  +V+++M    C     +       L    +   AF+  + M   G  P  ++ 
Sbjct: 399 DLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTY 458

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           + +I  LC+ +  ++ AF +F+EM + G  PD YTY  LI+  C++G I +A+  F EME
Sbjct: 459 SKVITFLCE-AMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEME 517

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +  CSP+VVTYT+L++   ++K V +A  +F  M   G  PN  TYS+L+DGLCK G S 
Sbjct: 518 SVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQ 577

Query: 279 QAMELLQMMISKRHR----------------PNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           +A E+   MI                     PN+VTY  L++GLCK  K+ +A E+LD M
Sbjct: 578 KACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVM 637

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
              G +P+  +Y  +I  FC +GK   A      M   G  P        +  + +++  
Sbjct: 638 SSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPT-------VHTYTSLIDA 690

Query: 383 LCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           + K    + A +V   M   S + + +TY+++I   C+ G+  K+ +++  +   GC P+
Sbjct: 691 MFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPN 750

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             T+++++  L    K+  + +L    +   C
Sbjct: 751 VVTYTSLIDGLGKSGKVDMSLQLFTQMITQGC 782



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 224/504 (44%), Gaps = 64/504 (12%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++V+  +     V KA ++F    +    G   D  T++++I           A    
Sbjct: 457 TYSKVITFLCEAMKVEKAFLLFQEMKSV---GVIPDVYTYTILIDSFCKVGLIEQARSWF 513

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           D +    C  +   + ++   Y +  +   A  +F +M + GC P   +Y  ++  L + 
Sbjct: 514 DEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKA 573

Query: 134 NQLKLAFRFYRHM----REIG------------IQPCVASLNVLIKALCKNSGTMDAAFK 177
            + + A   Y  M      +G            I P V +   LI  LCK    +DA  +
Sbjct: 574 GESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQ-E 632

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +   M + GC P+   Y  LI+G C++GK+  A+E+F  M      PTV TYTSLI+ + 
Sbjct: 633 LLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMF 692

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + + ++ A+++  +M      PNV TY++++DGLC+ G   +A++LL MM  +   PN+V
Sbjct: 693 KDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVV 752

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY++L++GL K GK+  ++++  +M  QG  P+   Y  +I+  C  G   EA + L EM
Sbjct: 753 TYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 812

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCK-------------------TDP---------- 388
                   +  W  +++ + +VVQG  K                     P          
Sbjct: 813 -------KQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFS 865

Query: 389 -----NRAFQVYLSMRNRSISVDSL---TYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
                 +A +++  M   S S++     TY+SLI   C    + K+  +  E+   G +P
Sbjct: 866 KAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVP 925

Query: 441 DEGTWSAVMTALWDRRKMRQAAEL 464
           +   +  ++  L    K  +A +L
Sbjct: 926 ELSAFICLIKGLIKVNKWNEALQL 949



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 203/484 (41%), Gaps = 66/484 (13%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F+ D    + MIS L+ A+ F  A   L R+    C      + ++  G+ +  +     
Sbjct: 270 FKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCK 329

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+   M   GC P P  + +++           A++    M   G  P     N+ I ++
Sbjct: 330 RIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSI 389

Query: 166 CKNS----------------------------------------GTMDAAFKIFREMPNR 185
           C                                           G  D AF+I + M  +
Sbjct: 390 CSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRK 449

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD+ TY  +I  LC   K+ +A  LF+EM++    P V TYT LI+  C+   +E+A
Sbjct: 450 GFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQA 509

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
              F+EM S G  P+V TY++L+    K     QA ++   M+     PN +TYS L++G
Sbjct: 510 RSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDG 569

Query: 306 LCKEGKLQEAVEILDRM----------------KLQGLKPDAGLYGKIISCFCDIGKYQE 349
           LCK G+ Q+A E+  +M                    + P+   YG +I   C   K  +
Sbjct: 570 LCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVD 629

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A   LD M   G  PN      HI I++ ++ G CK    + A +V+  M          
Sbjct: 630 AQELLDVMSSNGCEPN------HI-IYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVH 682

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY+SLI    K   +  + +++ +++   C P+  T++A++  L    + ++A  L LL 
Sbjct: 683 TYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKA--LKLLS 740

Query: 469 LMNK 472
           +M K
Sbjct: 741 MMEK 744



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 165/359 (45%), Gaps = 37/359 (10%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99
            E+ +    +  T+  +I  L  A++   A++LLD ++   C+    I+ ++  G+ +V 
Sbjct: 601 GEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVG 660

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           +  +A  VF +M + G  PT  +Y +++  + ++ +L LA +    M E    P V +  
Sbjct: 661 KLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYT 720

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I  LC+  G    A K+   M  RGC P+  TY +LI+GL + GK+  + +LF +M T
Sbjct: 721 AMIDGLCR-IGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMIT 779

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEA---------------------------------M 246
           + C+P  VTY  LIN  C +  ++EA                                 +
Sbjct: 780 QGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASL 839

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV---TYSTLL 303
            L EE+ S G+      Y  L+D   K G   +A+EL + M+      NI    TY++L+
Sbjct: 840 GLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLI 899

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
             LC   +L++A E+   +  +G+ P+   +  +I     + K+ EA      M   G+
Sbjct: 900 QALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGV 958



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 186/433 (42%), Gaps = 18/433 (4%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99
           AE   G+ H  + ++ +   L   ++ R  E LL  + ++  ++   +   I R   R  
Sbjct: 127 AERQVGYSHTGACYNALAEVLHFDDRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHG 186

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
               A+    ++K+FG  P+  +Y  ++ +L    Q+ + FR  + M E+G      ++ 
Sbjct: 187 AWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVG 246

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
              +ALCK     DA   I RE        D+     +I+GL       EA      M  
Sbjct: 247 CFAQALCKEGRWSDALVMIERE----DFKLDTVLCTQMISGLMEASLFDEAISFLHRMRC 302

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
            +C P VVTY +L+ G  + K +    R+   M ++G  PN   ++SL+   C       
Sbjct: 303 NSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPY 362

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE------AVEILDRMKLQGLKPDAGL 333
           A +LL  M      P  V Y+  +  +C   +L        A ++ + M       +   
Sbjct: 363 AYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVN 422

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAF 392
                 C C +GK+ +A   +  M+  G  P+  T+S        V+  LC+     +AF
Sbjct: 423 TANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYS-------KVITFLCEAMKVEKAF 475

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            ++  M++  +  D  TY+ LI  FCK G I ++    DE+   GC P   T++A++ A 
Sbjct: 476 LLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAY 535

Query: 453 WDRRKMRQAAELL 465
              +++ QA+++ 
Sbjct: 536 LKTKQVPQASDIF 548


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 208/434 (47%), Gaps = 48/434 (11%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVN-----------------KEKCDITEDIFL 89
           +H   +   MI  L    QF+ A++LL+R+                   +  D    I  
Sbjct: 97  KHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILS 156

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            +   Y       DA++VF+ M+  G +P   +   +L  L +     + ++ Y+ M  +
Sbjct: 157 WLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRV 216

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G+ P +   NVLI A CK SG ++ A ++  EM +R   PD +TY TLI+  C+ G  YE
Sbjct: 217 GVVPNIHIFNVLIHACCK-SGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYE 275

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQS-KSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           A  +   ME    SP +VTY SLI G C+    +EEA+RL E M  +G+ P V TY+S++
Sbjct: 276 ALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSIL 335

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
             LC+ G    A  LL  M  ++  P+ VT +TL+N  CK G +  A+++  +M   GLK
Sbjct: 336 RKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLK 395

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS------------------ 370
           PD   +  +I  FC + +   A  FL EM+  G +P+  T+S                  
Sbjct: 396 PDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRL 455

Query: 371 ----------LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
                     + I ++  +++ LCK D    A +++  M+ + +  DS+ Y+SL   + K
Sbjct: 456 PDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFK 515

Query: 420 KGDIHKSARIVDEL 433
            G    ++ ++DE+
Sbjct: 516 AGKAIAASDMLDEM 529



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGR-VHRPLDAM 105
           D  T++ +IS          A  + DR+  E+  ++ DI  + S+  G+ R V+   +A+
Sbjct: 256 DLFTYNTLISLYCKKGMHYEALGIQDRM--ERGGVSPDIVTYNSLIYGFCREVNDLEEAL 313

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+ + M+  G  P   +Y ++L  L EE ++K A R    M E  ++P   + N LI A 
Sbjct: 314 RLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAY 373

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK  G M +A K+ ++M   G  PD +T+  LI+G C+L ++  AKE   EM     SP+
Sbjct: 374 CK-IGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPS 432

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             TY+ L++      + E  +RL +E+  KG+  ++  Y +L+  LCK      A  +  
Sbjct: 433 YSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFT 492

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY----------G 335
           +M  K  + + V Y++L     K GK   A ++LD M  + L     +Y          G
Sbjct: 493 LMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGDG 552

Query: 336 KIISCFCD 343
            I+  F D
Sbjct: 553 SILGLFWD 560


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 217/440 (49%), Gaps = 15/440 (3%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   +L L+     +  A V +      Y    + +  TF++MI+ L    + + A+  L
Sbjct: 193 TCNHILSLLSRLNRIENAWVFYADM---YRMEIKSNVYTFNIMINVLCKEGKLKKAKGFL 249

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
             +       T   + ++ +GY    R   A  +  +MK  G +P  ++Y  +L+ +  E
Sbjct: 250 GIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNE 309

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
            +   A    R M+ IG+ P   S N+LI+  C N+G ++ AF    EM  +G  P  YT
Sbjct: 310 GR---ASEVLREMKGIGLVPDSVSYNILIRG-CSNNGDLETAFAYRDEMVKQGMVPTFYT 365

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y TLI+GL    KI  A+ L +E+  K      VTY  +ING CQ    ++A  L +EM 
Sbjct: 366 YNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMM 425

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           + G++P  FTY+SL+  LC+   + +A EL + ++ K  +P++V  +TL++G C  G + 
Sbjct: 426 TDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMD 485

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            A  +L  M    + PD   Y  ++   C  GK++EA   + EM   GI P+ +++    
Sbjct: 486 RAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISY---- 541

Query: 374 RIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              NT++ G  K  D   AF V   M +   +   LTY++L+    K  D   +  ++ E
Sbjct: 542 ---NTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLRE 598

Query: 433 LVLDGCLPDEGTWSAVMTAL 452
           +  +G +P++ ++ +V+ A+
Sbjct: 599 MKSEGIVPNDSSFCSVIEAM 618



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 192/405 (47%), Gaps = 35/405 (8%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F  + R Y ++    +A+  F  MKE G +P  ++   +L++L   N+++ A+ FY  M
Sbjct: 158 LFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADM 217

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
             + I+  V + N++I  LCK  G +  A      M + G  P   TY TL+ G    G+
Sbjct: 218 YRMEIKSNVYTFNIMINVLCK-EGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGR 276

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           I  A+ +  EM++K   P + TY  +++ +C      E +R   EM+  G+ P+  +Y+ 
Sbjct: 277 IEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEVLR---EMKGIGLVPDSVSYNI 333

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR-MKLQ 325
           L+ G    G    A      M+ +   P   TY+TL++GL  E K+ EA EIL R ++ +
Sbjct: 334 LIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKI-EAAEILIREIREK 392

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI---------- 375
           G+  D+  Y  +I+ +C  G  ++A    DEM+  GI P + T++  I +          
Sbjct: 393 GIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREA 452

Query: 376 ------------------HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
                              NT++ G C T + +RAF +   M   +I  D +TY+ L+  
Sbjct: 453 DELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRG 512

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            C +G   ++  ++ E+   G  PD  +++ +++    +   + A
Sbjct: 513 LCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHA 557



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 154/295 (52%), Gaps = 11/295 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A + F  M  +G  P + T   +++ L RL +I  A   + +M        V T+  
Sbjct: 172 VDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNI 231

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +IN LC+   +++A      M S G++P + TY++L+ G    G    A  ++  M SK 
Sbjct: 232 MINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKG 291

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P++ TY+ +L+ +C EG+   A E+L  MK  GL PD+  Y  +I    + G  + A 
Sbjct: 292 FQPDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAF 348

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTY 410
            + DEMV  G+ P   T+       NT++ GL   +   A ++ +  +R + I +DS+TY
Sbjct: 349 AYRDEMVKQGMVPTFYTY-------NTLIHGLFMENKIEAAEILIREIREKGIVLDSVTY 401

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +I  +C+ GD  K+  + DE++ DG  P + T+++++  L  R K R+A EL 
Sbjct: 402 NIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELF 456



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 129/257 (50%), Gaps = 1/257 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I  L   N+   AE L+  + ++   +    +  +  GY +      A  + D+M
Sbjct: 365 TYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEM 424

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G +PT  +Y +++ +L   N+ + A   +  +   G++P +  +N L+   C  +G 
Sbjct: 425 MTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCA-TGN 483

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           MD AF + +EM      PD  TY  L+ GLC  GK  EA+EL  EM+ +   P  ++Y +
Sbjct: 484 MDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNT 543

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G  +    + A  + +EM S G  P + TY++L+ GL K      A ELL+ M S+ 
Sbjct: 544 LISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEG 603

Query: 292 HRPNIVTYSTLLNGLCK 308
             PN  ++ +++  + K
Sbjct: 604 IVPNDSSFCSVIEAMSK 620



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 10/216 (4%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D  KA  + D    +   G +    T++ +I  L   N+ R A++L ++V  +       
Sbjct: 413 DAKKAFALHDEMMTD---GIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLV 469

Query: 87  IFLSICRGY---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           +  ++  G+   G + R    ++  D+M     +P   +Y  ++  L  E + + A    
Sbjct: 470 MMNTLMDGHCATGNMDRAFSLLKEMDRM---NIDPDDVTYNCLMRGLCGEGKFEEARELM 526

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M+  GI+P   S N LI    K  G    AF +  EM + G  P   TY  L+ GL +
Sbjct: 527 GEMKRRGIKPDHISYNTLISGYSKK-GDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSK 585

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
                 A+EL +EM+++   P   ++ S+I  + +S
Sbjct: 586 NQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSKS 621


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 194/396 (48%), Gaps = 34/396 (8%)

Query: 103 DAMRVFDKMKEF----GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           DAM +  K+K F    G  P   +Y T +    +      A + +  MR         + 
Sbjct: 222 DAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTY 281

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           NV+I  LC+ SG ++ AF    EM + G +PD++TYG L+NGLC+  ++ EAK L  EM 
Sbjct: 282 NVMISGLCR-SGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMS 340

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P +V Y +L++G  +     EA  + +EM S GV+PN   Y +L+ GLCK G   
Sbjct: 341 CSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLG 400

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A +LL+ MI    RP+  TY+ L+ G  ++     A E+L+ M+  G+ P+   YG +I
Sbjct: 401 RASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMI 460

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH---------------------- 376
           +  C  G+ +EA N L+EM+  G+ PN   ++  I  H                      
Sbjct: 461 NGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVH 520

Query: 377 ------NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N++++GL        A + Y  ++ R +  D  TYS LI  +CK G++ K+ ++
Sbjct: 521 PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQL 580

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +++  G  P+  T++ ++   +      + + +L
Sbjct: 581 LRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSIL 616



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 183/352 (51%), Gaps = 13/352 (3%)

Query: 119 TPKSYITVLAILVEE----NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           +P     VL +LV+       ++ A +    M ++G+ P     N L+K L + +  M+ 
Sbjct: 168 SPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLR-ADAMEL 226

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
            +K+   M   G  PD YTY T I   C+      AK++F+EM  + C+   VTY  +I+
Sbjct: 227 LWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMIS 286

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           GLC+S +VEEA    EEM   G+ P+ FTY +LM+GLCKG    +A  LL  M     +P
Sbjct: 287 GLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKP 346

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           NIV Y TL++G  KEGK  EA +IL  M   G++P+  +Y  +I   C IG+   A+  L
Sbjct: 347 NIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 406

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQG-LCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
            EM+  G+ P+  T+       N ++QG   + D + AF++   MRN  I  +  +Y  +
Sbjct: 407 KEMIKVGLRPDTFTY-------NPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIM 459

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I   C+ G+  ++  +++E++ +G  P+   ++ ++        +  A E L
Sbjct: 460 INGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEAL 511



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 209/434 (48%), Gaps = 30/434 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+  +++ L   ++ + A+ LLD ++         ++ ++  G+ +  +  +A
Sbjct: 308 GLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEA 367

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +M   G +P    Y  ++  L +  QL  A +  + M ++G++P   + N L++ 
Sbjct: 368 FDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQG 427

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             +     D AF++  EM N G  P+ Y+YG +INGLC+ G+  EA  L +EM ++   P
Sbjct: 428 HFQQHDK-DGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKP 486

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
               Y  LI G  +  ++  A    E+M    V P++F Y+SL+ GL   G   +A E  
Sbjct: 487 NAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYY 546

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +  +   P+  TYS L++G CK G L++A ++L +M   GLKP+A  Y  ++  +   
Sbjct: 547 AQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKS 606

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIR----------------------------IH 376
             Y++ ++ L  M+  G  P+   + + IR                            I+
Sbjct: 607 NDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIY 666

Query: 377 NTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           ++++ GLCK  D  +A  +   M    +    + Y++LI  FC+ GDI ++  + D ++ 
Sbjct: 667 SSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILA 726

Query: 436 DGCLPDEGTWSAVM 449
            G +P+  T++A++
Sbjct: 727 KGLVPNCVTYTALI 740



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 109/492 (22%), Positives = 213/492 (43%), Gaps = 78/492 (15%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G + +   +  ++   +   +   A D+L  +        + ++ ++ RG  ++ +   
Sbjct: 342 SGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGR 401

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++  +M + G  P   +Y  ++    +++    AF     MR  GI P V S  ++I 
Sbjct: 402 ASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMIN 461

Query: 164 ALCKNS----------------------------------GTMDAAFKIFREMPNRGCTP 189
            LC+N                                   G +  A +   +M      P
Sbjct: 462 GLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHP 521

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D + Y +LI GL  +G++ EA+E + +++ +   P   TY+ LI+G C++ ++E+A +L 
Sbjct: 522 DLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLL 581

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN-------------- 295
            +M + G++PN  TY+ L++G  K     +   +LQ M+    +P+              
Sbjct: 582 RQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRS 641

Query: 296 ---------------------IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
                                +  YS+L++GLCK   +++AV +LD M  +GL+P    Y
Sbjct: 642 ENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCY 701

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393
             +I  FC  G    A N  D ++  G+ PN +T++        ++ G CK  D   AF 
Sbjct: 702 NALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYT-------ALIDGNCKNGDITDAFD 754

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +Y  M +R I+ D+  Y+ L T      D+ ++  + +E+   G   +   ++ ++    
Sbjct: 755 LYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG-YANVSLFNTLVHGFC 813

Query: 454 DRRKMRQAAELL 465
            R K+++  +LL
Sbjct: 814 KRGKLQETEKLL 825



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 145/313 (46%), Gaps = 2/313 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+S +I           A+ LL ++         D +  +  GY + +     
Sbjct: 553 GLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKV 612

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +   M   G +P    Y  V+  L     +++AF     + + G+ P +   + LI  
Sbjct: 613 SSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISG 672

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +  M+ A  +  EM   G  P    Y  LI+G CR G I  A+ +F  +  K   P
Sbjct: 673 LCKIA-DMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVP 731

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTYT+LI+G C++  + +A  L++EM  +G+ P+ F Y+ L  G        QA+ L 
Sbjct: 732 NCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLT 791

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M + R   N+  ++TL++G CK GKLQE  ++L  M  + + P+A    K++S F   
Sbjct: 792 EEMFN-RGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKA 850

Query: 345 GKYQEAANFLDEM 357
           GK  EA     E+
Sbjct: 851 GKLGEAHRVFAEL 863



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 2/316 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++ +I  L +  +   AE+   +V K      E  +  +  GY +      A ++  +M 
Sbjct: 526 YNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQML 585

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  +L    + N  +      + M   G +P      ++I+ L + S  M
Sbjct: 586 NSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR-SENM 644

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           + AF +  E+   G  PD + Y +LI+GLC++  + +A  L  EM  +   P +V Y +L
Sbjct: 645 EVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNAL 704

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+S  +  A  +F+ + +KG+ PN  TY++L+DG CK G  + A +L + M+ +  
Sbjct: 705 IDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGI 764

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            P+   Y+ L  G      L++A+ + + M  +G   +  L+  ++  FC  GK QE   
Sbjct: 765 APDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHGFCKRGKLQETEK 823

Query: 353 FLDEMVLGGITPNRLT 368
            L  M+   I PN  T
Sbjct: 824 LLHVMMDREIVPNAQT 839



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 138/283 (48%), Gaps = 8/283 (2%)

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
           +R  +P +     L++   + G +  A ++   M     +PT      L+  L ++ ++E
Sbjct: 166 SRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAME 225

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
              +L   M   G+ P+V+TYS+ ++  CK      A ++ + M  +    N VTY+ ++
Sbjct: 226 LLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMI 285

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +GLC+ G ++EA    + M   GL PDA  YG +++  C   + +EA   LDEM   G+ 
Sbjct: 286 SGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLK 345

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           PN       I ++ T+V G  K      AF +   M +  +  + + Y +LI   CK G 
Sbjct: 346 PN-------IVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQ 398

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + ++++++ E++  G  PD  T++ +M   + +     A ELL
Sbjct: 399 LGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELL 441



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 106/249 (42%), Gaps = 2/249 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            +G + DN  + ++I  L  +     A  +L  V K        I+ S+  G  ++    
Sbjct: 621 GSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADME 680

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+ + D+M + G EP    Y  ++        +  A   +  +   G+ P   +   LI
Sbjct: 681 KAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALI 740

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CKN    DA F +++EM +RG  PD++ Y  L  G      + +A  L +EM  +  
Sbjct: 741 DGNCKNGDITDA-FDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY 799

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +  V  + +L++G C+   ++E  +L   M  + + PN  T   ++    K G   +A  
Sbjct: 800 A-NVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHR 858

Query: 283 LLQMMISKR 291
           +   +  K+
Sbjct: 859 VFAELQQKK 867



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 28/286 (9%)

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           R   P +  +  L   LC      +A  L  +M      P +V             S++ 
Sbjct: 109 RIAPPSADAFARLAASLCAASLFPQANGLLHQMILAHPHPPLVL-----------ASIQR 157

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A++  +  RS+   P+      L+D   K G    A +++ MM      P         N
Sbjct: 158 AIQDTDH-RSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPT----RRCCN 212

Query: 305 GLCKEGKLQEAVEILDRMKL----QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           GL K+    +A+E+L ++K      G+ PD   Y   I   C    +  A    +EM   
Sbjct: 213 GLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRR 272

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
               N +T+       N ++ GLC++     AF     M +  +S D+ TY +L+   CK
Sbjct: 273 DCAMNEVTY-------NVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCK 325

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              + ++  ++DE+   G  P+   +  ++       K  +A ++L
Sbjct: 326 GSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDIL 371


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 221/459 (48%), Gaps = 45/459 (9%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++++I  L        A  L + +  +        + S+  GYG+V     A+ VF++M
Sbjct: 253 TYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEM 312

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+ GCEP   +Y +++    +  ++  AF +   M++ G+QP V + + LI A CK +G 
Sbjct: 313 KDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCK-AGM 371

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A K F +M   G  P+ +TY +LI+  C++G + EA +L  EM+    +  +VTYT+
Sbjct: 372 LLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTA 431

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++GLC+   + EA  LF  +   G   N   Y+SL  G  K     +AM++L+ M  K 
Sbjct: 432 LLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKN 491

Query: 292 HRPNIVTYSTLLNGLCKE-----------------------------------GKLQEAV 316
            +P+++ Y T + GLC++                                   GK  EAV
Sbjct: 492 LKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAV 551

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            +L  M+  G+K     YG +I   C IG  Q+A  + D M   G+ PN       I I+
Sbjct: 552 NLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPN-------IMIY 604

Query: 377 NTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             ++ GLCK D    A  ++  M ++ IS D L Y+SLI    K G+  ++  + + +V 
Sbjct: 605 TALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVE 664

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            G   D   +++++   + R    Q A+ LL E++ K +
Sbjct: 665 IGMELDLCAYTSLIWG-FSRYGQVQLAKSLLDEMLRKGI 702



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 219/470 (46%), Gaps = 55/470 (11%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
            T   V+  +  E D+  A  +F+   A+   G R D  T++ +I           A  +
Sbjct: 252 FTYNMVIGCLAREGDLEAARSLFEEMKAK---GLRPDIVTYNSLIDGYGKVGMLTGAVSV 308

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            + +    C+     + S+   + +  R   A      MK+ G +P   +Y T++    +
Sbjct: 309 FEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCK 368

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              L  A +F+  M  +G+QP   +   LI A CK  G ++ AFK+  EM   G   +  
Sbjct: 369 AGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCK-IGDLNEAFKLESEMQQAGVNLNIV 427

Query: 193 TYGTLINGLCRLGKIYEAKELF-----------------------------------KEM 217
           TY  L++GLC  G++ EA+ELF                                   +EM
Sbjct: 428 TYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEM 487

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
             K   P ++ Y + I GLC+   +E++M +  EM   G+  N + Y++L+D   K G +
Sbjct: 488 NKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKT 547

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           ++A+ LLQ M     +  +VTY  L++GLCK G +Q+AV   D M   GL+P+  +Y  +
Sbjct: 548 TEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTAL 607

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYL 396
           I   C     +EA N  +EM+  GI+P++L       ++ +++ G  K  +P  A    L
Sbjct: 608 IDGLCKNDCLEEAKNLFNEMLDKGISPDKL-------VYTSLIDGNMKHGNPGEA----L 656

Query: 397 SMRNRSISV----DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           S+RNR + +    D   Y+SLI  F + G +  +  ++DE++  G +PD+
Sbjct: 657 SLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQ 706



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 195/410 (47%), Gaps = 45/410 (10%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+  F  M   G  P+  +Y  V+  L  E  L+ A   +  M+  G++P + + N LI 
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLID 294

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
              K  G +  A  +F EM + GC PD  TY +LIN  C+  +I +A E    M+ +   
Sbjct: 295 GYGK-VGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQ 353

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY++LI+  C++  + EA + F +M   G++PN FTY+SL+D  CK G  ++A +L
Sbjct: 354 PNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKL 413

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQE----------------------------- 314
              M       NIVTY+ LL+GLC++G+++E                             
Sbjct: 414 ESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIK 473

Query: 315 ------AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
                 A++IL+ M  + LKPD  LYG  I   C   + +++   + EM+  G+T N   
Sbjct: 474 AKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSY- 532

Query: 369 WSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                 I+ T++    K      A  +   M++  I +  +TY  LI   CK G + ++ 
Sbjct: 533 ------IYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAV 586

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           R  D +  +G  P+   ++A++  L     + +A   L  E+++K +  +
Sbjct: 587 RYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKN-LFNEMLDKGISPD 635



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 211/474 (44%), Gaps = 49/474 (10%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           L++ + D   AL  F  A A    GFRH   ++ ++   L     +  A  +        
Sbjct: 101 LVKLKGDPKSALKFFKEAGAR--AGFRHAAESYCVLAHILFCGMFYLDARSV-------- 150

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
             I E I L      GR     D   +    +   C P    + T+  +LV+   L+ A 
Sbjct: 151 --IKEWILL------GREFPGCDFFDMLWSTRNV-CRPGFGVFDTLFNVLVDLGMLEEAR 201

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           + +  M +  + P V S N L+  L K+S     A   F++M   G +P  +TY  +I  
Sbjct: 202 QCFWKMNKFRVLPKVRSCNELLHRLSKSSKG-GLALSFFKDMVVAGLSPSVFTYNMVIGC 260

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           L R G +  A+ LF+EM+ K   P +VTY SLI+G  +   +  A+ +FEEM+  G EP+
Sbjct: 261 LAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPD 320

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           V TY+SL++  CK     QA E L  M  +  +PN+VTYSTL++  CK G L EA +   
Sbjct: 321 VITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFV 380

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT------------ 368
            M   GL+P+   Y  +I   C IG   EA     EM   G+  N +T            
Sbjct: 381 DMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDG 440

Query: 369 ----------------WSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYS 411
                           W+L+ +I+ ++  G  K     +A  +   M  +++  D L Y 
Sbjct: 441 RMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYG 500

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + I   C++ +I  S  ++ E++  G   +   ++ ++ A +   K  +A  LL
Sbjct: 501 TKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLL 554



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 184/390 (47%), Gaps = 55/390 (14%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ ++  L    + R AE+L   + K    + + I+ S+  GY +      AM + ++M
Sbjct: 428 TYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEM 487

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            +   +P    Y T +  L  +N++                                   
Sbjct: 488 NKKNLKPDLLLYGTKIWGLCRQNEI----------------------------------- 512

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            + +  + REM + G T +SY Y TLI+   ++GK  EA  L +EM+      TVVTY  
Sbjct: 513 -EDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGV 571

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+GLC+   V++A+R F+ M   G++PN+  Y++L+DGLCK  C  +A  L   M+ K 
Sbjct: 572 LIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKG 631

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+ + Y++L++G  K G   EA+ + +RM   G++ D   Y  +I  F   G+ Q A 
Sbjct: 632 ISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAK 691

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI---SVDSL 408
           + LDEM+  GI P+++     +R +  +       D N A  ++  M  R +   ++D +
Sbjct: 692 SLLDEMLRKGIIPDQVLCICLLRKYYEL------GDINEALALHDDMARRGLISGTID-I 744

Query: 409 TYSSLIT--------CFCKKG-DIHKSARI 429
           T  S +T        C  + G D H++A +
Sbjct: 745 TVPSCLTAVTKLHKLCASQSGTDFHRTANL 774


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 214/411 (52%), Gaps = 10/411 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ MI    SA +F  A  LL+R+ +  C  +   F SI    G+  +  +A+ +F+ M
Sbjct: 55  AYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM 114

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+   EP   +Y  ++ +L    +++ A+R    M    + P + ++N+++  LCK +  
Sbjct: 115 KK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK-ARK 172

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A+KIF     RGC PD  TY +LI+GL + G++ EA  LF++M     +   V YTS
Sbjct: 173 LEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTS 232

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI         E+  ++F+E+  +G +P++   ++ MD + K G   +   + + + S  
Sbjct: 233 LIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYG 292

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++ +YS L++GL K G+ +E   I   MK QG   DA  Y  ++  FC  GK  +A 
Sbjct: 293 FLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAY 352

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             L+EM    + P   T+         +V GL K D  + A+ ++   +++ I ++ + Y
Sbjct: 353 EILEEMKEKCVQPTVATYG-------AIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLY 405

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SSLI  F K G I ++  I++E++  G  P+  TW++++ AL    ++ +A
Sbjct: 406 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEA 456



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 202/398 (50%), Gaps = 13/398 (3%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V +L +A K + +A  IF+SA+     G   D  T+  +I  L    Q   A  L +++ 
Sbjct: 164 VDRLCKARK-LEEAYKIFESASQR---GCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 219

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
               +    ++ S+ R +    R  D  ++F ++   GC+P      T +  + +  +++
Sbjct: 220 DAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVE 279

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                +  +R  G  P V S ++LI  L K +G       IF  M  +G   D+  Y  +
Sbjct: 280 KGRMIFEDIRSYGFLPDVRSYSILIHGLTK-AGQARETSNIFHAMKQQGFALDARAYNAV 338

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++G C+ GK+++A E+ +EM+ K   PTV TY ++++GL +   ++EA  LFEE +SKG+
Sbjct: 339 VDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGI 398

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
           E NV  YSSL+DG  K G   +A  +L+ M+ K   PN+ T+++LL+ L K  ++ EA+ 
Sbjct: 399 ELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALV 458

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
               MK     P+   Y  +I+  C + KY +A  F  +M   G+ PN +T++       
Sbjct: 459 CFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYT------- 511

Query: 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414
           T++ GL K  +   A+ ++   +      D+ ++++LI
Sbjct: 512 TMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALI 549



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/484 (22%), Positives = 236/484 (48%), Gaps = 42/484 (8%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           ++   +L  +  ++ V++AL +F+    +       ++ST++++I  L    +   A  +
Sbjct: 89  VSFNSILTCLGKKRKVDEALSLFEVMKKDA----EPNSSTYNIIIDMLCLGGRVEEAYRI 144

Query: 73  LDRVNKEKCD---ITEDIFLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           LD +         +T +I +  +C+      +  +A ++F+   + GC P   +Y +++ 
Sbjct: 145 LDEMEHASLFPNLLTVNIMVDRLCKA----RKLEEAYKIFESASQRGCNPDCVTYCSLID 200

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            L ++ Q+  A+R +  M + G          LI+    + G  +   KIF+E+  RGC 
Sbjct: 201 GLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH-GRKEDGHKIFKELIRRGCK 259

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD     T ++ + + G++ + + +F+++ +    P V +Y+ LI+GL ++    E   +
Sbjct: 260 PDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNI 319

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F  M+ +G   +   Y++++DG CK G   +A E+L+ M  K  +P + TY  +++GL K
Sbjct: 320 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 379

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
             +L EA  + +  K +G++ +  LY  +I  F  +G+  EA   L+EM+  G+TPN  T
Sbjct: 380 IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 439

Query: 369 WSL----------------------------HIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           W+                             +   ++ ++ GLC+    N+AF  +  M+
Sbjct: 440 WNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQ 499

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            + +  + +TY+++I+   K G+I  +  + +    +G +PD  +++A++  + +  +  
Sbjct: 500 KQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAM 559

Query: 460 QAAE 463
           +A +
Sbjct: 560 EAYQ 563



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 204/437 (46%), Gaps = 46/437 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D+ +++ MI  L  A +   AE+L  ++  E+       + ++  GYG   R  
Sbjct: 11  AQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFE 70

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA ++ +++                                   RE G  P V S N ++
Sbjct: 71  DAYKLLERL-----------------------------------RERGCIPSVVSFNSIL 95

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K    +D A  +F E+  +   P+S TY  +I+ LC  G++ EA  +  EME  + 
Sbjct: 96  TCLGKKR-KVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASL 153

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P ++T   +++ LC+++ +EEA ++FE    +G  P+  TY SL+DGL K G   +A  
Sbjct: 154 FPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYR 213

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M+   H  N V Y++L+      G+ ++  +I   +  +G KPD  L    + C  
Sbjct: 214 LFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVF 273

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNR 401
             G+ ++     +++   G  P+       +R ++ ++ GL K    R    ++ +M+ +
Sbjct: 274 KAGEVEKGRMIFEDIRSYGFLPD-------VRSYSILIHGLTKAGQARETSNIFHAMKQQ 326

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             ++D+  Y++++  FCK G +HK+  I++E+      P   T+ A++  L    ++ +A
Sbjct: 327 GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEA 386

Query: 462 AELLLLELMNKCVEAEV 478
             +L  E  +K +E  V
Sbjct: 387 Y-MLFEEAKSKGIELNV 402



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 168/328 (51%), Gaps = 8/328 (2%)

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           +A++F+  ++  G++P   S   +I  LCK +G +  A ++F +M      P +Y Y T+
Sbjct: 1   MAWKFFHELKAQGLKPDDVSYTSMIWVLCK-AGRLGEAEELFAQMEAERSVPCAYAYNTM 59

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I G    G+  +A +L + +  + C P+VV++ S++  L + + V+EA+ LFE M+ K  
Sbjct: 60  IMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK-KDA 118

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
           EPN  TY+ ++D LC GG   +A  +L  M      PN++T + +++ LCK  KL+EA +
Sbjct: 119 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 178

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           I +    +G  PD   Y  +I      G+  EA    ++M+  G   N + ++  IR  N
Sbjct: 179 IFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR--N 236

Query: 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
             + G  K D ++ F+    +  R    D    ++ + C  K G++ K   I +++   G
Sbjct: 237 FFIHGR-KEDGHKIFK---ELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYG 292

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
            LPD  ++S ++  L    + R+ + + 
Sbjct: 293 FLPDVRSYSILIHGLTKAGQARETSNIF 320



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 140/267 (52%), Gaps = 3/267 (1%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G  +  +  +   +F  MK+ G     ++Y  V+    +  ++  A+     M+E  
Sbjct: 303 LIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC 362

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           +QP VA+   ++  L K    +D A+ +F E  ++G   +   Y +LI+G  ++G+I EA
Sbjct: 363 VQPTVATYGAIVDGLAKID-RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEA 421

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             + +EM  K  +P V T+ SL++ L +++ + EA+  F+ M+     PN +TYS L++G
Sbjct: 422 YLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILING 481

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC+    ++A    Q M  +   PN+VTY+T+++GL K G + +A  + +R K  G  PD
Sbjct: 482 LCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 541

Query: 331 AGLYGKIISCFCDIGKYQEA--ANFLD 355
           A  +  +I    +  +  EA  A +LD
Sbjct: 542 AASFNALIEGMSNANRAMEAYQAGWLD 568


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 186/356 (52%), Gaps = 9/356 (2%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           ++ + G  P  K +  ++  LV   +L  A   +  M+  G++  V S N +I  +C+ +
Sbjct: 106 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCR-A 164

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +D A  + R M   G TPD YTYG LI GLCR+G+I +A+ +F++M  +   P  V +
Sbjct: 165 GDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVF 224

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           T LI+  C+    E  + L  EMR +GV P+  TY+++++GLC+      A  ++  M S
Sbjct: 225 TILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS 284

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              RP+ VTY+TL++G CKE +L  A+EI   M  +G+  D   Y  +IS     G+  +
Sbjct: 285 AGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSAD 344

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSL 408
           A   L EM+  G+ P+  T+++       V+   C K D     ++   M+N+      +
Sbjct: 345 AERVLGEMMEAGLEPDNTTYTM-------VIDAFCRKGDVKTGLRLLKEMQNKGRKPGVV 397

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           TY+ ++  FCK G +  +  +++ ++  G  PD+ T++ ++       K+    EL
Sbjct: 398 TYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL 453



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 171/341 (50%), Gaps = 8/341 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +   F++++  LV   +   A+++ D +       T   F ++  G  R      A
Sbjct: 111 GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGA 170

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +M E G  P   +Y  ++  L    +++ A   +  M   G++P      +LI A
Sbjct: 171 ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDA 230

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G  +   ++ REM  RG  PD+ TY  ++NGLCR   +  A  +  EM +    P
Sbjct: 231 HCKK-GDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRP 289

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTYT+LI+G C+ + ++ AM + + M ++GV  +  TY++L+ GL K G S+ A  +L
Sbjct: 290 DTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVL 349

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+     P+  TY+ +++  C++G ++  + +L  M+ +G KP    Y  I++ FC +
Sbjct: 350 GEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKL 409

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G+ + A   L+ M+  G++P+ +T+       N ++ G CK
Sbjct: 410 GQMKNADMLLNAMINIGVSPDDITY-------NILLDGHCK 443



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 163/309 (52%), Gaps = 5/309 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHR 100
           + G R    +F+ MIS +  A     AE L  R+++    +T D++   ++ +G  RV R
Sbjct: 144 SRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSE--AGVTPDVYTYGALIQGLCRVGR 201

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             DA  VF+KM   G +P    +  ++    ++   +     +R MRE G++P   + N 
Sbjct: 202 IEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNA 261

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++  LC+ +  + +A  I  EM + G  PD+ TY TLI+G C+  ++  A E+ + M  +
Sbjct: 262 IVNGLCR-ARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAE 320

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                 VTYT+LI+GL ++    +A R+  EM   G+EP+  TY+ ++D  C+ G     
Sbjct: 321 GVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTG 380

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + LL+ M +K  +P +VTY+ ++NG CK G+++ A  +L+ M   G+ PD   Y  ++  
Sbjct: 381 LRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDG 440

Query: 341 FCDIGKYQE 349
            C  GK  +
Sbjct: 441 HCKHGKVTD 449



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 164/303 (54%), Gaps = 9/303 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T   A   + ++ + G  P++  +  L+  L RLG++  A+ +F EM+++    TVV++ 
Sbjct: 96  TAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFN 155

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++I+G+C++  ++ A  L   M   GV P+V+TY +L+ GLC+ G    A  + + M  +
Sbjct: 156 TMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGR 215

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN V ++ L++  CK+G  +  +E+   M+ +G++PDA  Y  I++  C     + A
Sbjct: 216 GMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSA 275

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
           +  + EM   G+ P+ +T++       T++ G CK +  + A ++  +M    + +D +T
Sbjct: 276 SGIVVEMRSAGLRPDTVTYT-------TLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVT 328

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           Y++LI+   K G    + R++ E++  G  PD  T++ V+ A   +  ++     LL E+
Sbjct: 329 YTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLR-LLKEM 387

Query: 470 MNK 472
            NK
Sbjct: 388 QNK 390



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 133/278 (47%), Gaps = 32/278 (11%)

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           TS    + +  +  EA   + ++   G+ P    ++ LM  L + G  + A  +   M S
Sbjct: 85  TSCTGLMSRFPTAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQS 144

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           +  R  +V+++T+++G+C+ G L  A  +  RM   G+ PD   YG +I   C +G+ ++
Sbjct: 145 RGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIED 204

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIH----------------------------NTVVQ 381
           A    ++M   G+ PN + +++ I  H                            N +V 
Sbjct: 205 ARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVN 264

Query: 382 GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLC+  D   A  + + MR+  +  D++TY++LI  +CK+ ++  +  I   +V +G   
Sbjct: 265 GLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGL 324

Query: 441 DEGTWSAVMTALWDRRKMRQA-AELLLLELMNKCVEAE 477
           DE T++A+++ L   +  R A AE +L E+M   +E +
Sbjct: 325 DEVTYTALISGLS--KAGRSADAERVLGEMMEAGLEPD 360



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 4/199 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  T++ +I       +   A ++   +  E   + E  + ++  G  +  R  DA
Sbjct: 286 GLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADA 345

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            RV  +M E G EP   +Y  V+     +  +K   R  + M+  G +P V + NV++  
Sbjct: 346 ERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNG 405

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M  A  +   M N G +PD  TY  L++G C+ GK+ + +EL      K   P
Sbjct: 406 FCK-LGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL---KSAKGTVP 461

Query: 225 TVVTYTSLINGLCQSKSVE 243
            +  YTS++  + + K+ +
Sbjct: 462 DLGVYTSIVGEIVKKKTTK 480


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 217/441 (49%), Gaps = 28/441 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN-----------------KEKCDITEDI 87
            ++H   +   MI  L      + A+ LL+++                   +  DI   +
Sbjct: 73  NYKHSLQSSWTMIHILTKFKHLKTAQSLLEKIAYRDFLSTQSVLSALVRLHDDPDINSHV 132

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  +   Y       +A++VF+ M   G  P   +   +L  L ++    + ++ Y+ M 
Sbjct: 133 FSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMA 192

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            IG++  +   NVLI A CK SG ++ A  +  EM ++   PD +TY TLI+  C+ G  
Sbjct: 193 RIGVEANIHVYNVLIHACCK-SGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMH 251

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           YEA  +   ME +   P +VTY SLI+G C+   + EAMRLF+E+R     PN  TY++L
Sbjct: 252 YEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRD--ATPNHVTYTTL 309

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG C+     QA+ L + M ++   P +VTY+++L  LC+ G++++A ++L+ M  + +
Sbjct: 310 IDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKI 369

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT- 386
           +PD      +I+ +C IG  + A    + MV  G+  ++ T       +  ++ G CK  
Sbjct: 370 EPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFT-------YKALIHGFCKIR 422

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           + + A ++ LSM +   S    TYS L+  +C + +     ++ DE V  G   D+  + 
Sbjct: 423 EMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYR 482

Query: 447 AVMTALWDRRKMRQAAELLLL 467
           A++     R ++  A ++  L
Sbjct: 483 ALIRRFCKREQVDYAKKIFSL 503



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 188/394 (47%), Gaps = 17/394 (4%)

Query: 44  NGFRHDNSTFSLMISKLVS---ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           NGFR      +++++ L      +        + R+  E      ++ +  C   G V +
Sbjct: 159 NGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEK 218

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A  +  +M+     P   +Y T++++  ++     A      M   GI+P + + N 
Sbjct: 219 ---ADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNS 275

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   CK  G M  A ++F+E+  R  TP+  TY TLI+G CRL  + +A  L +EME +
Sbjct: 276 LIHGFCK-EGRMREAMRLFKEI--RDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQ 332

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              PTVVTY S++  LC+   + +A +L  EM  K +EP+  T ++L++  CK G    A
Sbjct: 333 GLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSA 392

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +++   M+    + +  TY  L++G CK  ++  A E+L  M   G  P    Y  ++  
Sbjct: 393 LKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDG 452

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           +C+    +      DE V  G+  ++        ++  +++  CK +  + A +++  M+
Sbjct: 453 YCNQQNEEAVLKLPDEFVRKGLCVDK-------SLYRALIRRFCKREQVDYAKKIFSLMQ 505

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            +    DS+ Y+SL   + K G  + ++ ++DE+
Sbjct: 506 EKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEM 539



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 121/295 (41%), Gaps = 42/295 (14%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPL 102
           G + D  T++ +I       + R A     R+ KE  D T +   + ++  GY R++   
Sbjct: 265 GIKPDIVTYNSLIHGFCKEGRMREAM----RLFKEIRDATPNHVTYTTLIDGYCRLNDLD 320

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+R+ ++M+  G  PT  +Y ++L  L E  +++ A +    M E  I+P   + N LI
Sbjct: 321 QALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLI 380

Query: 163 KALCKNSGTMDAAFKI-------------------------FREMP----------NRGC 187
            A CK  G M +A K+                          REM           + G 
Sbjct: 381 NAYCK-IGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGF 439

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           +P   TY  L++G C         +L  E   K        Y +LI   C+ + V+ A +
Sbjct: 440 SPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKK 499

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           +F  M+ KG   +   Y+SL     K G ++ A +LL  M  +R    +  Y  L
Sbjct: 500 IFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYKRRLMITLKIYRAL 554


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 206/417 (49%), Gaps = 14/417 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRV-FDK 110
            FSL+I + +    F   ED L    + +C       L+I  G  R  R  D++ V +  
Sbjct: 168 VFSLLIMEFLEMGLF---EDALWVSREMRCSPDSKACLAILNGLVR-RRRFDSVWVDYQL 223

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M   G  P    Y  +     ++       +    M  +G++P V    + I+ LC+ + 
Sbjct: 224 MISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCREN- 282

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            M+ A K+F  M   G  P+ YTY  +I+G C+ G + +A  L+KE+      P VV + 
Sbjct: 283 KMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFG 342

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +L++G C+++ +  A  LF  M   GV+PN++ Y+ L+ G CK G   +AM LL  M S 
Sbjct: 343 TLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESL 402

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++ TY+ L+NGLC E +L EA  +  RMK + + P +  Y  +I  FC     ++A
Sbjct: 403 NLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKA 462

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
            +   EM   G+ PN +T+S       T++ G CK  +   A  +Y  M  + I  D +T
Sbjct: 463 LDLCSEMTSSGVEPNIITFS-------TLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVT 515

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           Y++LI    K+ ++ ++ R+  +++  G  P++ T++ ++   W   ++  A +  L
Sbjct: 516 YTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYL 572



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 157/377 (41%), Gaps = 46/377 (12%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            F  ++     A +   A  L   + K   D    ++  +  G  +    L+AM +  +M
Sbjct: 340 VFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEM 399

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +     P   +Y  ++  L  E +L  A R ++ M+   I P   + N LI   CK    
Sbjct: 400 ESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYN- 458

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +  EM + G  P+  T+ TLI+G C++  I  A  L+ EM  K   P VVTYT+
Sbjct: 459 IEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTT 518

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG--------------------- 270
           LI+   +  +++EA+RL+ +M   G+ PN  T++ L+DG                     
Sbjct: 519 LIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAA 578

Query: 271 ----------------------LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
                                 LC+ G   +A      M S    P+I +Y ++L    +
Sbjct: 579 TGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLR 638

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL-DEMVLGGITPNRL 367
           E ++ + + +   M   G+ P+  +  ++++ F     Y  +A FL +   LG I  N  
Sbjct: 639 EKRITDTMMLHCDMIKTGILPNL-MVNQLLAMFYQENGYLRSACFLTNSSRLGTIFKNTC 697

Query: 368 TWSLHIRIHNTVVQGLC 384
                I + +  + G+C
Sbjct: 698 NSIFLITVFHCKMYGIC 714



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 9/284 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++++I+ L +  +   A  L  R+  E+   +   + S+  G+ + +    A+ + 
Sbjct: 407 DVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLC 466

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M   G EP   ++ T++    +   +K A   Y  M   GI P V +   LI A  K 
Sbjct: 467 SEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKE 526

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +  M  A +++ +M   G  P+ +T+  L++G  + G++ +A + + E    A   ++V 
Sbjct: 527 AN-MKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQ 585

Query: 229 --------YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                   +T LI GLCQ+  +  A R F +M+S GV P++++Y S++    +    +  
Sbjct: 586 RSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDT 645

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           M L   MI     PN++    L     + G L+ A  + +  +L
Sbjct: 646 MMLHCDMIKTGILPNLMVNQLLAMFYQENGYLRSACFLTNSSRL 689


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 195/396 (49%), Gaps = 12/396 (3%)

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+F   ++  G+ +  R   A +V D+MK+ G EP   +Y  ++       +L LA R  
Sbjct: 145 DVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVM 204

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             + +   +P V +  +LI+A     G +D A K+  EM +RG  PD YTY  ++NG+C+
Sbjct: 205 DQLLKDNCKPTVITYTILIEATITQGG-IDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCK 263

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G +  A E    +    C   V TY  L+  L      E   +L  +M  KG EPN  T
Sbjct: 264 EGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPIT 323

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           YS+L+  LC+ G   +A  +L++M  K   P+  +Y  L++ LC+EGK+  A+E LD M 
Sbjct: 324 YSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMI 383

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G  PD   Y  I++  C  G   EA N  +++   G  PN  ++       NT+   L
Sbjct: 384 SGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSY-------NTLFGAL 436

Query: 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR-IVDELVLDGCLPD 441
             + D  RA  + L M +  I  D +TY+SLI+C C+ G + ++   +VD    + C P 
Sbjct: 437 WSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPT 496

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
             +++ V+  L   +++  A E+L   +   C+  E
Sbjct: 497 VISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNE 532



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 215/429 (50%), Gaps = 21/429 (4%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNK---EKCDITEDIFLSICRGYGRVHRPLD 103
           + D   ++ +IS    A++   A  +LDR+ K   E   +T +I +    G GR+     
Sbjct: 143 KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDL--- 199

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+RV D++ +  C+PT  +Y  ++   + +  +  A +    M   G++P   + NV++ 
Sbjct: 200 ALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVN 259

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +CK  G +D AF+    +   GC     TY  L+  L   GK    ++L  +M  K C 
Sbjct: 260 GMCK-EGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCE 318

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  +TY++LI  LC+   ++EA  + + M+ K + P+ ++Y  L+  LC+ G    A+E 
Sbjct: 319 PNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEF 378

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MIS  H P+I++Y+++L  LCK G   EA+ I +++   G  P+AG Y  +      
Sbjct: 379 LDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWS 438

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSM-RNR 401
            G    A   + EM+  GI P+ +T+       N+++  LC+    ++A ++ + M  + 
Sbjct: 439 SGDKIRALGMILEMLSNGIDPDEITY-------NSLISCLCRDGLVDQAIELLVDMFESE 491

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL----WDRRK 457
                 ++Y++++   CK   I  +  ++  +V +GCLP+E T++ ++  +    W R  
Sbjct: 492 KCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGW-RYD 550

Query: 458 MRQAAELLL 466
             + A LL+
Sbjct: 551 AMELANLLV 559



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 183/375 (48%), Gaps = 16/375 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRP 101
           GF  D  T++++I       +   A  ++D++ K+ C    IT  I +      G +   
Sbjct: 176 GFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGID-- 233

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +AM++ D+M   G  P   +Y  V+  + +E  L  AF F   + + G    V++ N+L
Sbjct: 234 -EAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNIL 292

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           ++ L  N G  +   K+  +M  +GC P+  TY TLI  LCR GKI EAK + K M+ KA
Sbjct: 293 LRDLL-NEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKA 351

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            +P   +Y  LI+ LC+   V+ A+   ++M S G  P++ +Y+S++  LCK G + +A+
Sbjct: 352 LAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEAL 411

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            + + +      PN  +Y+TL   L   G    A+ ++  M   G+ PD   Y  +ISC 
Sbjct: 412 NIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCL 471

Query: 342 CDIGKYQEAANFLDEMVLG-GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           C  G   +A   L +M       P  +++       NTV+ GLCK      A +V  +M 
Sbjct: 472 CRDGLVDQAIELLVDMFESEKCQPTVISY-------NTVLLGLCKVQRIIDAIEVLAAMV 524

Query: 400 NRSISVDSLTYSSLI 414
           N     +  TY+ LI
Sbjct: 525 NEGCLPNETTYTLLI 539



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 161/315 (51%), Gaps = 10/315 (3%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           +  F +HM   G +P V     LIK    N   ++ A ++   +   G  PD + Y  +I
Sbjct: 96  SLYFLQHMVNRGYKPDVILCTKLIKGFF-NMKKIEKAIQVMEILEKHG-KPDVFAYNAVI 153

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +G C+  ++  A ++   M+ +   P VVTY  LI   C    ++ A+R+ +++     +
Sbjct: 154 SGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCK 213

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P V TY+ L++     G   +AM+LL  M+S+  RP+  TY+ ++NG+CKEG L  A E 
Sbjct: 214 PTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEF 273

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L R+   G       Y  ++    + GK++     + +M++ G  PN +T+S       T
Sbjct: 274 LSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYS-------T 326

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++  LC+    + A  V   M+ ++++ D  +Y  LI+  C++G +  +   +D+++  G
Sbjct: 327 LITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGG 386

Query: 438 CLPDEGTWSAVMTAL 452
            LPD  ++++++ +L
Sbjct: 387 HLPDILSYNSILASL 401



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 174/351 (49%), Gaps = 8/351 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T IT   +++    +  +++A+ + D   +    G R D  T++++++ +        A 
Sbjct: 215 TVITYTILIEATITQGGIDEAMKLLDEMLSR---GLRPDRYTYNVVVNGMCKEGMLDRAF 271

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           + L R++K  C      +  + R      +     ++   M   GCEP P +Y T++  L
Sbjct: 272 EFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITAL 331

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
             + ++  A    + M+E  + P   S + LI ALC+  G +D A +   +M + G  PD
Sbjct: 332 CRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCR-EGKVDLAIEFLDDMISGGHLPD 390

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             +Y +++  LC+ G   EA  +F+++    C P   +Y +L   L  S     A+ +  
Sbjct: 391 ILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMIL 450

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL-QMMISKRHRPNIVTYSTLLNGLCKE 309
           EM S G++P+  TY+SL+  LC+ G   QA+ELL  M  S++ +P +++Y+T+L GLCK 
Sbjct: 451 EMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKV 510

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG-KYQ--EAANFLDEM 357
            ++ +A+E+L  M  +G  P+   Y  +I      G +Y   E AN L  M
Sbjct: 511 QRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMELANLLVNM 561



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 125/246 (50%), Gaps = 7/246 (2%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            +   +N  C+S   +E++   + M ++G +P+V   + L+ G        +A+++++++
Sbjct: 79  NFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEIL 138

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
             K  +P++  Y+ +++G CK  ++  A ++LDRMK +G +PD   Y  +I  FC  G+ 
Sbjct: 139 -EKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRL 197

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDS 407
             A   +D+++     P  +T++  I I  T+ QG      + A ++   M +R +  D 
Sbjct: 198 DLALRVMDQLLKDNCKPTVITYT--ILIEATITQG----GIDEAMKLLDEMLSRGLRPDR 251

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            TY+ ++   CK+G + ++   +  +  +GC+    T++ ++  L +  K     +L+  
Sbjct: 252 YTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSD 311

Query: 468 ELMNKC 473
            L+  C
Sbjct: 312 MLVKGC 317



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 114/236 (48%), Gaps = 12/236 (5%)

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGL---CKGGCSSQAMELLQMMISKRHRPNIVTY 299
           ++  R+ E   +K  +   F  ++ M  L   CK     +++  LQ M+++ ++P+++  
Sbjct: 56  QQQFRVNETKPTKHDQDYDFRDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILC 115

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + L+ G     K+++A+++++ ++  G KPD   Y  +IS FC   +   A+  LD M  
Sbjct: 116 TKLIKGFFNMKKIEKAIQVMEILEKHG-KPDVFAYNAVISGFCKADRVDHASKVLDRMKK 174

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            G  P+ +T+       N ++   C +   + A +V   +   +     +TY+ LI    
Sbjct: 175 RGFEPDVVTY-------NILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATI 227

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            +G I ++ +++DE++  G  PD  T++ V+  +     + +A E L     N CV
Sbjct: 228 TQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCV 283


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 181/335 (54%), Gaps = 9/335 (2%)

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +E+ +  A +    MR  G +P V + NVLI  +CK  G +D A K    MP+ GC P+ 
Sbjct: 94  KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK-EGRLDEAIKFLNNMPSYGCQPNV 152

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            T+  ++  +C  G+  +A++L  +M  K CSP+VVT+  LIN LC+   +  A+ + E+
Sbjct: 153 ITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK 212

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M   G  PN  +Y+ L+ G CK     +A+E L +M+S+   P+IVTY+TLL  LCK+GK
Sbjct: 213 MPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGK 272

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  AVEIL+++  +G  P    Y  +I     +GK + A   LDEM   G+ P+ +T+S 
Sbjct: 273 VDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYS- 331

Query: 372 HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 ++V GL +    + A + +  +    I  +++TY+S++   CK     ++   +
Sbjct: 332 ------SLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFL 385

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             ++   C P E T++ ++  +      ++A +LL
Sbjct: 386 AYMISKRCKPTEATYTILIEGIAYEGLAKEALDLL 420



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 175/329 (53%), Gaps = 11/329 (3%)

Query: 153 PC--VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           PC  ++  +  ++  CK SG +  A K+  EM N+G  PD  TY  LING+C+ G++ EA
Sbjct: 78  PCFSLSGFSFYVQTTCKESG-VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 136

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            +    M +  C P V+T+  ++  +C +    +A +L  +M  KG  P+V T++ L++ 
Sbjct: 137 IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINF 196

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LC+ G   +A+++L+ M      PN ++Y+ LL+G CKE K+  A+E LD M  +G  PD
Sbjct: 197 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 256

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN- 389
              Y  +++  C  GK   A   L+++   G +P  +T+       NTV+ GL K     
Sbjct: 257 IVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITY-------NTVIDGLSKVGKTE 309

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           RA ++   MR + +  D +TYSSL++   ++G + ++ +   +L   G  P+  T++++M
Sbjct: 310 RAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIM 369

Query: 450 TALWDRRKMRQAAELLLLELMNKCVEAEV 478
             L   R+  +A + L   +  +C   E 
Sbjct: 370 LGLCKSRQTDRAIDFLAYMISKRCKPTEA 398



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 170/341 (49%), Gaps = 10/341 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-- 82
           E  V +A+ + D    +   G + D  T++++I+ +    +   A   L+ +    C   
Sbjct: 95  ESGVGQAMKLLDEMRNK---GSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPN 151

Query: 83  -ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
            IT +I L   R      R +DA ++   M   GC P+  ++  ++  L  +  L  A  
Sbjct: 152 VITHNIIL---RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAID 208

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
               M   G  P   S N L+   CK    MD A +    M +RGC PD  TY TL+  L
Sbjct: 209 ILEKMPMHGCTPNSLSYNPLLHGFCKEK-KMDRAIEYLDIMVSRGCYPDIVTYNTLLTAL 267

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+ GK+  A E+  ++ +K CSP ++TY ++I+GL +    E A++L +EMR KG++P++
Sbjct: 268 CKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDI 327

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TYSSL+ GL + G   +A++    +     RPN +TY++++ GLCK  +   A++ L  
Sbjct: 328 ITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAY 387

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           M  +  KP    Y  +I      G  +EA + L+E+   G+
Sbjct: 388 MISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 428


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 189/363 (52%), Gaps = 9/363 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A   + ++ + G  P  K +  ++  LV   +L  A   +  M+  G++  V S N +I
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             +C+ +G +D A  + R M   G TPD YTYG LI GLCR+G+I +A+ +F++M  +  
Sbjct: 283 SGMCR-AGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGM 341

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  V +T LI+  C+    E  + L  EMR +GV P+  TY+++++GLC+      A  
Sbjct: 342 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 401

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           ++  M S   RP+ VTY+TL++G CKE +L  A+EI   M  +G+  D   Y  +IS   
Sbjct: 402 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 461

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
             G+  +A   L EM+  G+ P+  T+++       V+   C K D     ++   M+N+
Sbjct: 462 KAGRSADAERVLGEMMEAGLEPDNTTYTM-------VIDAFCRKGDVKTGLRLLKEMQNK 514

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
                 +TY+ ++  FCK G +  +  +++ ++  G  PD+ T++ ++       K+   
Sbjct: 515 GRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDI 574

Query: 462 AEL 464
            EL
Sbjct: 575 EEL 577



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 171/341 (50%), Gaps = 8/341 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +   F++++  LV   +   A+++ D +       T   F ++  G  R      A
Sbjct: 235 GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGA 294

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +M E G  P   +Y  ++  L    +++ A   +  M   G++P      +LI A
Sbjct: 295 ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDA 354

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G  +   ++ REM  RG  PD+ TY  ++NGLCR   +  A  +  EM +    P
Sbjct: 355 HCKK-GDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRP 413

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTYT+LI+G C+ + ++ AM + + M ++GV  +  TY++L+ GL K G S+ A  +L
Sbjct: 414 DTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVL 473

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+     P+  TY+ +++  C++G ++  + +L  M+ +G KP    Y  I++ FC +
Sbjct: 474 GEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKL 533

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G+ + A   L+ M+  G++P+ +T+       N ++ G CK
Sbjct: 534 GQMKNADMLLNAMINIGVSPDDITY-------NILLDGHCK 567



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 163/309 (52%), Gaps = 5/309 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHR 100
           + G R    +F+ MIS +  A     AE L  R+++    +T D++   ++ +G  RV R
Sbjct: 268 SRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSE--AGVTPDVYTYGALIQGLCRVGR 325

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             DA  VF+KM   G +P    +  ++    ++   +     +R MRE G++P   + N 
Sbjct: 326 IEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNA 385

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++  LC+ +  + +A  I  EM + G  PD+ TY TLI+G C+  ++  A E+ + M  +
Sbjct: 386 IVNGLCR-ARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAE 444

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                 VTYT+LI+GL ++    +A R+  EM   G+EP+  TY+ ++D  C+ G     
Sbjct: 445 GVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTG 504

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + LL+ M +K  +P +VTY+ ++NG CK G+++ A  +L+ M   G+ PD   Y  ++  
Sbjct: 505 LRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDG 564

Query: 341 FCDIGKYQE 349
            C  GK  +
Sbjct: 565 HCKHGKVTD 573



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 164/303 (54%), Gaps = 9/303 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T   A   + ++ + G  P++  +  L+  L RLG++  A+ +F EM+++    TVV++ 
Sbjct: 220 TAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFN 279

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++I+G+C++  ++ A  L   M   GV P+V+TY +L+ GLC+ G    A  + + M  +
Sbjct: 280 TMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGR 339

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN V ++ L++  CK+G  +  +E+   M+ +G++PDA  Y  I++  C     + A
Sbjct: 340 GMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSA 399

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
           +  + EM   G+ P+ +T++       T++ G CK +  + A ++  +M    + +D +T
Sbjct: 400 SGIVVEMRSAGLRPDTVTYT-------TLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVT 452

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           Y++LI+   K G    + R++ E++  G  PD  T++ V+ A   +  ++     LL E+
Sbjct: 453 YTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLR-LLKEM 511

Query: 470 MNK 472
            NK
Sbjct: 512 QNK 514



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 133/278 (47%), Gaps = 32/278 (11%)

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           TS    + +  +  EA   + ++   G+ P    ++ LM  L + G  + A  +   M S
Sbjct: 209 TSCTGLMSRFPTAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQS 268

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           +  R  +V+++T+++G+C+ G L  A  +  RM   G+ PD   YG +I   C +G+ ++
Sbjct: 269 RGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIED 328

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIH----------------------------NTVVQ 381
           A    ++M   G+ PN + +++ I  H                            N +V 
Sbjct: 329 ARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVN 388

Query: 382 GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLC+  D   A  + + MR+  +  D++TY++LI  +CK+ ++  +  I   +V +G   
Sbjct: 389 GLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGL 448

Query: 441 DEGTWSAVMTALWDRRKMRQA-AELLLLELMNKCVEAE 477
           DE T++A+++ L   +  R A AE +L E+M   +E +
Sbjct: 449 DEVTYTALISGLS--KAGRSADAERVLGEMMEAGLEPD 484



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 4/199 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  T++ +I       +   A ++   +  E   + E  + ++  G  +  R  DA
Sbjct: 410 GLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADA 469

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            RV  +M E G EP   +Y  V+     +  +K   R  + M+  G +P V + NV++  
Sbjct: 470 ERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNG 529

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M  A  +   M N G +PD  TY  L++G C+ GK+ + +EL      K   P
Sbjct: 530 FCK-LGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL---KSAKGTVP 585

Query: 225 TVVTYTSLINGLCQSKSVE 243
            +  YTS++  + + K+ +
Sbjct: 586 DLGVYTSIVGEIVKKKTTK 604


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 178/327 (54%), Gaps = 9/327 (2%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C P   SY TV+    +E  L   +  Y  M +  I P V + N +I ALCK + T+D A
Sbjct: 8   CPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCK-AQTVDKA 66

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            ++   M   G  PD  TY ++++G C  G+  EA    K+M +    P VVTY SL++ 
Sbjct: 67  MEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDY 126

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           LC++    EA ++F+ M  +G++P++ TY +L+ G    G   +   LL +M+     PN
Sbjct: 127 LCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 186

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
              +S L+    K+ K++EA+ +  +M+ QGL P+A  YG +I   C  G+ ++A  + +
Sbjct: 187 HYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFE 246

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLI 414
           +M+  G+ P+ +       ++N+++  LC  D   +A +++L M +R I + ++ ++S+I
Sbjct: 247 QMIDEGLRPDSI-------VYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSII 299

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPD 441
              CK+G + +S ++ D +V  G  PD
Sbjct: 300 DSHCKEGRVIESVKLFDLMVRIGVKPD 326



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 157/288 (54%), Gaps = 7/288 (2%)

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           C PD  +Y T+ING  + G + +    + EM  K  SP VVTY S+I  LC++++V++AM
Sbjct: 8   CPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAM 67

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            +   M   GV P+  TY+S++ G C  G   +A+  L+ M S    P++VTY++L++ L
Sbjct: 68  EVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYL 127

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CK G+  EA +I D M  +GLKPD   YG ++  +   G   E    LD MV  GI PN 
Sbjct: 128 CKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 187

Query: 367 LTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
             +S+ +  +        +     A  V+  MR + ++ +++TY ++I   CK G +  +
Sbjct: 188 YVFSILVCAYAK------QEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDA 241

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
               ++++ +G  PD   +++++ +L    K  +A E L LE++++ +
Sbjct: 242 MLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEE-LFLEMLDRGI 288



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 131/265 (49%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V   M + G  P   +Y +++       Q K A  F + MR  G++P V + N L+ 
Sbjct: 66  AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 125

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCKN G    A KIF  M  RG  PD  TYGTL+ G    G + E   L   M      
Sbjct: 126 YLCKN-GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 184

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    ++ L+    + + VEEAM +F +MR +G+ PN  TY +++D LCK G    AM  
Sbjct: 185 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 244

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  RP+ + Y++L++ LC   K ++A E+   M  +G+      +  II   C 
Sbjct: 245 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCK 304

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G+  E+    D MV  G+ P+ +T
Sbjct: 305 EGRVIESVKLFDLMVRIGVKPDIIT 329



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 110/223 (49%), Gaps = 5/223 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRGYGRVHR 100
           ++G   D  T++ ++  L    +   A  + D + K   K DIT   + ++ +GY     
Sbjct: 110 SDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITT--YGTLLQGYATKGA 167

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            ++   + D M   G  P    +  ++    ++ +++ A   +  MR+ G+ P   +   
Sbjct: 168 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 227

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I  LCK SG ++ A   F +M + G  PDS  Y +LI+ LC   K  +A+ELF EM  +
Sbjct: 228 VIDVLCK-SGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDR 286

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
               + + + S+I+  C+   V E+++LF+ M   GV+P++ T
Sbjct: 287 GICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPDIIT 329



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 4/195 (2%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS T     G + D +T+  ++    +         LLD + +        +F  +  
Sbjct: 139 IFDSMTKR---GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVC 195

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +  +AM VF KM++ G  P   +Y TV+ +L +  +++ A  ++  M + G++P
Sbjct: 196 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP 255

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
                N LI +LC      + A ++F EM +RG    +  + ++I+  C+ G++ E+ +L
Sbjct: 256 DSIVYNSLIHSLCIFD-KWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKL 314

Query: 214 FKEMETKACSPTVVT 228
           F  M      P ++T
Sbjct: 315 FDLMVRIGVKPDIIT 329


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 213/380 (56%), Gaps = 16/380 (4%)

Query: 89  LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
           L +CR  G+  + +D +   +++ E G  P   +Y T++     E Q++ AF+F   M E
Sbjct: 237 LWLCRS-GKTDQSIDKL---NELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVE 292

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
              +P + + N+L++ LC   G +D A K+F    ++G   D+ TY T+I+GLC+ G+  
Sbjct: 293 KSFKPDLFTCNILLRGLC-TEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFE 351

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRLFEEMRSKGVEPNVFTYSSL 267
           EA +L  EME K   P   TY +++  L  ++  VE+A +   +M  K  +P++FT + L
Sbjct: 352 EAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNIL 411

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-G 326
           + GLC  G    A++L    ISK    + VTY+T+++GLCKEG+ +EA ++L  M+ + G
Sbjct: 412 LRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNG 471

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L PD   Y  II  +C  G+ ++A  F ++MV     P+  T        N +++GLC+ 
Sbjct: 472 LVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTC-------NILLRGLCRE 524

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
               +A +++ +  ++  ++D++TY+++I+  CK+G   ++  ++ E+      PD  T+
Sbjct: 525 GMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTY 584

Query: 446 SAVMTALWDRRKMRQAAELL 465
           +A++ AL D  +M +A E +
Sbjct: 585 NAILCALADAGRM-EAEEFM 603



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 218/452 (48%), Gaps = 23/452 (5%)

Query: 26  KDVNKALVIFDSATAEYA--NGFRHDNSTFSLMI-----SKLVSANQFRPAEDLLDRVNK 78
           K V    VI D++   Y   N   H    F+ M        L++ N    A  L+   +K
Sbjct: 129 KKVQSLRVILDTSIGAYVSCNRPHHAAQIFNRMKRLHLKPNLLTRNTLINA--LVRYPSK 186

Query: 79  EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL--VEENQL 136
               +++ IF ++ + +G  ++  +A+ +  KMK+F C P   SY T+L +L      + 
Sbjct: 187 PSVCLSKAIFTNVIK-FGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKT 245

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
             +      + E G+ P   + N +I   C+  G ++ AF+   +M  +   PD +T   
Sbjct: 246 DQSIDKLNELLESGLVPHQITYNTIIHGYCR-EGQVEKAFQFRNKMVEKSFKPDLFTCNI 304

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L+ GLC  G +  A +LF    +K  +   VTY ++I+GLC+    EEA  L  EM  K 
Sbjct: 305 LLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKK 364

Query: 257 VEPNVFTYSSLMDGLCKG-GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           + P+ +TY++++  L    G   +A +    M+ K  +P++ T + LL GLC EG L  A
Sbjct: 365 LGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNA 424

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV-LGGITPNRLTWSLHIR 374
           +++ +    +G   DA  Y  IIS  C  G+++EA + L EM    G+ P++ T+     
Sbjct: 425 LKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTY----- 479

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             NT++ G C+     +AFQ    M  +S   D  T + L+   C++G + K+ ++ +  
Sbjct: 480 --NTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTW 537

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  G   D  T++ +++ L    +  +A +LL
Sbjct: 538 ISKGKAIDAVTYNTIISGLCKEGRFEEAFDLL 569



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 167/314 (53%), Gaps = 4/314 (1%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F+ D  T ++++  L +      A  L +    +   I    + +I  G  +  R  +A 
Sbjct: 295 FKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAF 354

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVE-ENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            +  +M+E    P   +Y  +L  L + E Q++ AF+F   M E   +P + + N+L++ 
Sbjct: 355 DLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRG 414

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACS 223
           LC   G +D A K+F    ++G   D+ TY T+I+GLC+ G+  EA +L  EME K    
Sbjct: 415 LC-TEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLV 473

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P   TY ++I G C+   VE+A +   +M  K  +P++FT + L+ GLC+ G   +A++L
Sbjct: 474 PDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKL 533

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
               ISK    + VTY+T+++GLCKEG+ +EA ++L  MK + L PD   Y  I+    D
Sbjct: 534 FNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAILCALAD 593

Query: 344 IGKYQEAANFLDEM 357
            G+  EA  F+ ++
Sbjct: 594 AGR-MEAEEFMSKI 606



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 197/387 (50%), Gaps = 31/387 (8%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y   +RP  A ++F++MK    +P   +  T++  LV            R+  +  +  
Sbjct: 144 AYVSCNRPHHAAQIFNRMKRLHLKPNLLTRNTLINALV------------RYPSKPSVCL 191

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN--GLCRLGKIYEAK 211
             A    +IK   KN   +  A  +  +M +  C PD+ +Y T+++   LCR GK  ++ 
Sbjct: 192 SKAIFTNVIKFGVKNK--LSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSI 249

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           +   E+      P  +TY ++I+G C+   VE+A +   +M  K  +P++FT + L+ GL
Sbjct: 250 DKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGL 309

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
           C  G    A++L    ISK    + VTY+T+++GLCKEG+ +EA ++L  M+ + L PD 
Sbjct: 310 CTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDC 369

Query: 332 GLYGKIISCFCDI-GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
             Y  I+    D  G+ ++A  F ++MV     P+  T        N +++GLC     +
Sbjct: 370 YTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTC-------NILLRGLCTEGMLD 422

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL-VLDGCLPDEGTWSAV 448
            A +++ +  ++  ++D++TY+++I+  CK+G   ++  ++ E+   +G +PD+ T++ +
Sbjct: 423 NALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTI 482

Query: 449 MTALWDRRKMRQAAELLLLELMNKCVE 475
           +       ++ +A      +  NK VE
Sbjct: 483 ILGYCREGQVEKA-----FQFRNKMVE 504



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 147/300 (49%), Gaps = 13/300 (4%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK----CDI 83
           ++ AL +F++  ++   G   D  T++ +IS L    +F  A DLL  + ++K    C  
Sbjct: 315 LDNALKLFNTWISK---GKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYT 371

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
              I  ++    G+V +   A +  +KM E   +P   +   +L  L  E  L  A + +
Sbjct: 372 YNAILCALADAEGQVEK---AFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLF 428

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLC 202
                 G      + N +I  LCK  G  + AF +  EM  + G  PD  TY T+I G C
Sbjct: 429 NTWISKGKAIDAVTYNTIISGLCK-EGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYC 487

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           R G++ +A +   +M  K+  P + T   L+ GLC+   + +A++LF    SKG   +  
Sbjct: 488 REGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAV 547

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY++++ GLCK G   +A +LL  M  K+  P+  TY+ +L  L   G++ EA E + ++
Sbjct: 548 TYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAILCALADAGRM-EAEEFMSKI 606


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 176/332 (53%), Gaps = 1/332 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  T+S+++  L    +F  A  +LD + ++ C      + ++   + R     
Sbjct: 341 SKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWD 400

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  + D+M   G     + Y  ++  L ++ +L  A R  + M+  G +P + + N +I
Sbjct: 401 DARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMI 460

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC N   M+ A  IFR +   G   +  TY TLI+ L R G+  E   L  EM    C
Sbjct: 461 YHLCNND-LMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGC 519

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              V++Y  LI  LC+  +V+ +M L EEM +KG++PN F+Y+ L++ LCK G    A+E
Sbjct: 520 QLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALE 579

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M+++   P+IVTY+TL+NGLCK G    A+ +L+++  + + PD   Y  +IS  C
Sbjct: 580 LSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHC 639

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
            +    +AA  LD+ + GGI PN  TW + ++
Sbjct: 640 KVRLLDDAAMLLDKAISGGIVPNERTWGMMVQ 671



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 225/487 (46%), Gaps = 47/487 (9%)

Query: 30  KALVIFDSATAEYA--NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +AL + D     +A    FR    ++++++S L  A+    A  L  R+ +++   T   
Sbjct: 124 RALHLLDQMPRRFAVSPSFR----SYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFT 179

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F    R   R+ R  DA+ +   M   GC P    Y TV+  LV +  +  A      M 
Sbjct: 180 FGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEML 239

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL--- 204
            +G    V + N L+  LC   G +  A ++   M  +GC P   TYG L+ GLCR    
Sbjct: 240 LMGCAADVNTFNDLVLGLC-GLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQA 298

Query: 205 ----------------------------GKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
                                       GK+  A EL++ M +K C P V TY+ L++GL
Sbjct: 299 DEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGL 358

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+      A+R+ +EM  KG  PN+ TYS+L+   C+ G    A  +L  M++K    N 
Sbjct: 359 CKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNS 418

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
             Y+ ++  LCK+GKL +A  ++  MK QG KPD   Y  +I   C+    +EA +    
Sbjct: 419 QGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRN 478

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           ++  G+  N +T+       NT++  L +        ++   M      +D ++Y+ LI 
Sbjct: 479 LIEEGVVANGITY-------NTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIK 531

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
             CK+G++ +S  +++E+V  G  P+  +++ ++  L    K+R A E L  E++N+ + 
Sbjct: 532 ALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALE-LSKEMLNQGLT 590

Query: 476 AEVDIQN 482
            ++   N
Sbjct: 591 PDIVTYN 597



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/462 (28%), Positives = 220/462 (47%), Gaps = 56/462 (12%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC----DITEDIFLSICRGYGRVH 99
           +G   D   +  +I  LV+      A  LLD +    C    +   D+ L +C G GRV 
Sbjct: 206 HGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLC-GLGRVR 264

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
              +A R+ D+M   GC P+  +Y  +L  L    Q   A      + E+     V  LN
Sbjct: 265 ---EAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVN----VVMLN 317

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I+  C   G +  A +++  M ++GC PD +TY  L++GLC+LG+   A  +  EME 
Sbjct: 318 TVIRG-CLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEE 376

Query: 220 KACSPTVVTYTSLI-----NG------------------------------LCQSKSVEE 244
           K C+P +VTY++L+     NG                              LC+   +++
Sbjct: 377 KGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQ 436

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A RL +EM+S+G +P++ TY++++  LC      +A  + + +I +    N +TY+TL++
Sbjct: 437 ATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIH 496

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
            L + G+ QE + +   M L G + D   Y  +I   C  G    +   L+EMV  GI P
Sbjct: 497 ALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKP 556

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           N  ++       N ++  LCK    R A ++   M N+ ++ D +TY++LI   CK G  
Sbjct: 557 NNFSY-------NMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWT 609

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           H +  ++++L  +   PD  T++ +++     R +  AA LL
Sbjct: 610 HAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLL 651



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 130/269 (48%), Gaps = 5/269 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A GF  ++  ++ +I  L    +   A  L+  +  + C    DI       Y   +  L
Sbjct: 411 AKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCK--PDICTYNTMIYHLCNNDL 468

Query: 103 --DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A  +F  + E G      +Y T++  L+   + +   R    M   G Q  V S N 
Sbjct: 469 MEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNG 528

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LIKALCK  G +D +  +  EM  +G  P++++Y  LIN LC+ GK+ +A EL KEM  +
Sbjct: 529 LIKALCK-EGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQ 587

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +P +VTY +LINGLC+      A+ L E++ ++ V P++ TY+ L+   CK      A
Sbjct: 588 GLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDA 647

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKE 309
             LL   IS    PN  T+  ++    ++
Sbjct: 648 AMLLDKAISGGIVPNERTWGMMVQNFVRQ 676


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 225/446 (50%), Gaps = 45/446 (10%)

Query: 56  MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG 115
           ++  L  A +F  AE++L  V K +  +   IF+ + RGY        ++    +M+   
Sbjct: 25  LVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIELARGYASAGLLEKSVEALKRMEGHR 84

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C  T  +Y +++   V+    + A   YR M + G++P   + NVL+ A  K +  +D+ 
Sbjct: 85  CALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAF-KKAKRVDSV 143

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           +K+F EM N+ C+P+  TY  LI+ +C+ G + +A ++F +M+++ C P + TYTS+I+G
Sbjct: 144 WKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDG 203

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           L +S  V++A  LFEEM S+G+      Y+SL+ GL + G +  A +L + M+SK  +P+
Sbjct: 204 LGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPD 263

Query: 296 IVTYSTLLNG-----------------------------------LCKEGKLQEAVEILD 320
            VT+++L+ G                                   LCK  +L EA EI  
Sbjct: 264 HVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFG 323

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            ++  GL PD   +  ++   C  G+  +A   L +M   G TP+       + ++NT++
Sbjct: 324 ELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPD-------VTVYNTLI 376

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GL K+     A Q+ L M++     D +TY++LI   CK G I  + R+ +E+   G  
Sbjct: 377 DGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKG-F 435

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
            +  T++ ++  L    ++ +A +L 
Sbjct: 436 ANTVTYNTILNGLCMAGRVDEAYKLF 461



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 197/379 (51%), Gaps = 20/379 (5%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHR 100
           +G R D  TF+++++    A +      L + +  + C    IT  I +      G V +
Sbjct: 118 SGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEK 177

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A++VF  MK  GC P   +Y +++  L +   +  AF  +  M   G+       N 
Sbjct: 178 ---ALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNS 234

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  L + SG  DAA K+FREM ++G  PD  T+ +L+ GL   G+  EA+ +F+E    
Sbjct: 235 LIHGLGR-SGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDV 293

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C+  V  Y  LI+ LC+SK ++EA  +F E+   G+ P+V+T+++LMDGLCK G    A
Sbjct: 294 GCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDA 353

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             LL  M      P++  Y+TL++GL K G+++EA ++L  M+  G +PD   Y  +I  
Sbjct: 354 FILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDE 413

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
            C  G+ ++A    +E+   G   N +T+       NT++ GLC     + A++++  M+
Sbjct: 414 SCKGGRIEDALRLFEEISAKGFA-NTVTY-------NTILNGLCMAGRVDEAYKLFNGMK 465

Query: 400 NRS----ISVDSLTYSSLI 414
             +    I  D +TY++L+
Sbjct: 466 QETVDGVIDPDFVTYTTLL 484



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 164/296 (55%), Gaps = 5/296 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V KAL +F    +    G R +  T++ MI  L  +     A  L + +  E    T  +
Sbjct: 175 VEKALKVFLDMKSR---GCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVV 231

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+  G GR  R   A ++F +M   G +P   ++ +++  L    +   A R ++  R
Sbjct: 232 YNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEAR 291

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           ++G    V   NVLI  LCK S  +D A++IF E+   G  PD YT+  L++GLC+ G+I
Sbjct: 292 DVGCALDVNLYNVLIDTLCK-SKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRI 350

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           ++A  L  +M+   C+P V  Y +LI+GL +S  VEEA +L  EM+S G EP+V TY++L
Sbjct: 351 HDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTL 410

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +D  CKGG    A+ L +  IS +   N VTY+T+LNGLC  G++ EA ++ + MK
Sbjct: 411 IDESCKGGRIEDALRLFE-EISAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMK 465



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 177/328 (53%), Gaps = 10/328 (3%)

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           ++ N LI A  K +G    A  ++R M   G  PD+YT+  L+N   +  ++    +LF+
Sbjct: 90  SAYNSLIDAFVK-AGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFE 148

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM+ + CSP V+TY+ LI+ +C+   VE+A+++F +M+S+G  PN+FTY+S++DGL K G
Sbjct: 149 EMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSG 208

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A  L + M S+      V Y++L++GL + G+   A ++   M  +GL+PD   + 
Sbjct: 209 HVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFT 268

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
            ++      G+  EA     E          +  +L + ++N ++  LCK+   + A+++
Sbjct: 269 SLVYGLGVAGRASEARRIFQE-------ARDVGCALDVNLYNVLIDTLCKSKRLDEAWEI 321

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           +  +    +  D  T+++L+   CK G IH +  ++ ++   GC PD   ++ ++  L  
Sbjct: 322 FGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRK 381

Query: 455 RRKMRQAAELLLLELMNKCVEAEVDIQN 482
             ++ +A + LLLE+ +   E +V   N
Sbjct: 382 SGRVEEAGQ-LLLEMQSLGYEPDVVTYN 408



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 149/287 (51%), Gaps = 9/287 (3%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V+KA  +F+  T+E   G       ++ +I  L  + +   A  L   +  +        
Sbjct: 210 VDKAFFLFEEMTSE---GLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVT 266

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F S+  G G   R  +A R+F + ++ GC      Y  ++  L +  +L  A+  +  + 
Sbjct: 267 FTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELE 326

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G+ P V + N L+  LCK SG +  AF +  +M   GCTPD   Y TLI+GL + G++
Sbjct: 327 EDGLVPDVYTFNALMDGLCK-SGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRV 385

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA +L  EM++    P VVTY +LI+  C+   +E+A+RLFEE+ +KG   N  TY+++
Sbjct: 386 EEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF-ANTVTYNTI 444

Query: 268 MDGLCKGGCSSQAMELLQMM----ISKRHRPNIVTYSTLLNGLCKEG 310
           ++GLC  G   +A +L   M    +     P+ VTY+TLLNG  + G
Sbjct: 445 LNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAG 491


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 234/486 (48%), Gaps = 47/486 (9%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V  ++R++ D   AL  F  A  ++   + H    +  ++  L      + A  +L  + 
Sbjct: 166 VCAVLRSQADERVALNFFYWADRQWR--YSHHPLVYYTLLDVLSKTKLCQGARRVLRLMT 223

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +   +++ + F  +   Y R  +  +A+RV   M++ G EP      T + +LV+  +L+
Sbjct: 224 RRGIELSPEAFGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLE 283

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD--SY--- 192
            A RF   M+  GI+P + + N LIK  C +   ++ A ++   +P++GC PD  SY   
Sbjct: 284 KALRFLERMQVTGIKPDIVTYNSLIKGYC-DLNRIEDALELIAGLPSKGCPPDKVSYYTV 342

Query: 193 -------------------------------TYGTLINGLCRLGKIYEAKELFKEMETKA 221
                                          TY TLI+ L + G   +A    KE E K 
Sbjct: 343 MGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKG 402

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
                V Y+++++  CQ   ++EA  L  +M S+   P+V TY++++DG C+ G   +A 
Sbjct: 403 FHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAK 462

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++LQ M     +PN V+Y+ LLNGLC  GK  EA E+++  +     P+A  YG ++  F
Sbjct: 463 KMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGF 522

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRN 400
              GK  EA +   EMV  G  P  +         N ++Q LC+       + YL    N
Sbjct: 523 RREGKLSEACDLTREMVEKGFFPTPVEI-------NLLIQSLCQNQKVVEAKKYLEECLN 575

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  +++ + ++++I  FC+ GD+  +  +++++ L    PD  T++A+  AL  + ++ +
Sbjct: 576 KGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDE 635

Query: 461 AAELLL 466
           AAEL++
Sbjct: 636 AAELIV 641



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 206/405 (50%), Gaps = 16/405 (3%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEF 114
           I  LV   +   A   L+R+  +   I  DI  + S+ +GY  ++R  DA+ +   +   
Sbjct: 273 IYVLVKGCKLEKALRFLERM--QVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSK 330

Query: 115 GCEPTPKSYITVLAILVEENQL-KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
           GC P   SY TV+  L +E ++ ++     + +++  + P   + N LI  L K+ G  D
Sbjct: 331 GCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKH-GHAD 389

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
            A    +E  ++G   D   Y  +++  C+ G++ EAK L  +M +++C+P VVTYT+++
Sbjct: 390 DALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIV 449

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +G C+   ++EA ++ ++M   G +PN  +Y++L++GLC  G S +A E++ +       
Sbjct: 450 DGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWT 509

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN +TY  +++G  +EGKL EA ++   M  +G  P       +I   C   K  EA  +
Sbjct: 510 PNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKY 569

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSS 412
           L+E +  G   N + ++       TV+ G C+  D   A  V   M   +   D++TY++
Sbjct: 570 LEECLNKGCAINVVNFT-------TVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTA 622

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL--WDR 455
           L     KKG + ++A ++ +++  G  P   T+ +V+     W R
Sbjct: 623 LFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGR 667



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 159/340 (46%), Gaps = 18/340 (5%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I  L        A   L     +   I +  + +I   + +  R  +A  + 
Sbjct: 371 DQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLV 430

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M    C P   +Y  ++       ++  A +  + M + G +P   S   L+  LC +
Sbjct: 431 IDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHS 490

Query: 169 SGTMDAAFKIFREMPN----RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             +++A     REM N       TP++ TYG +++G  R GK+ EA +L +EM  K   P
Sbjct: 491 GKSLEA-----REMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFP 545

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T V    LI  LCQ++ V EA +  EE  +KG   NV  +++++ G C+ G    A+ +L
Sbjct: 546 TPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVL 605

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M      P+ VTY+ L + L K+G+L EA E++ +M  +GL P    +  +I  +C  
Sbjct: 606 EDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQW 665

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           G+  +  N LD MV     P R        I+N V++ LC
Sbjct: 666 GRVDDMLNLLDRMV--KRKPFR-------TIYNHVIEKLC 696



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 166/421 (39%), Gaps = 76/421 (18%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           ++T   ++ ++      + AL     A  +   GF  D   +S ++       +   A+ 
Sbjct: 372 QVTYNTLIHMLSKHGHADDALAFLKEAEDK---GFHIDKVGYSAIVHSFCQKGRMDEAKS 428

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           L+  +    C+     + +I  G+ R+ R  +A ++  +M + GC+P   SY  +L  L 
Sbjct: 429 LVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLC 488

Query: 132 E-----------------------------------ENQLKLAFRFYRHMREIGIQPCVA 156
                                               E +L  A    R M E G  P   
Sbjct: 489 HSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPV 548

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
            +N+LI++LC+N   ++A  K   E  N+GC  +   + T+I+G C++G +  A  + ++
Sbjct: 549 EINLLIQSLCQNQKVVEAK-KYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLED 607

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M      P  VTYT+L + L +   ++EA  L  +M SKG++P   T+ S++   C+ G 
Sbjct: 608 MYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGR 667

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR--------------- 321
               + LL  M+ ++  P    Y+ ++  LC  G L+EA ++L +               
Sbjct: 668 VDDMLNLLDRMVKRK--PFRTIYNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDANTCHV 725

Query: 322 --------------------MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
                               M  + L PD  L  K+       G   EA   +   V  G
Sbjct: 726 LMESCLKKGVALSAYKVACQMFRRNLTPDLKLCEKVTKKLVLDGNLVEADKLMLRFVERG 785

Query: 362 I 362
           I
Sbjct: 786 I 786


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 214/452 (47%), Gaps = 28/452 (6%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF-----------L 89
            Y +GF H   ++  ++  LV     R AE++ + + K      E  F           L
Sbjct: 94  HYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEARFVLNLLTHHEFSL 153

Query: 90  SICRGYGRVHRPLDAMRVFDK-------MKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           S+   Y R+   L    + D+       M   G EP   S+ T++    +   + +A  +
Sbjct: 154 SV-TSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAY 212

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +  + + G      +   LI   CK     DA +K+F  MP  GC  +  +Y  LI+G C
Sbjct: 213 FCGLMKFGFCCDSFTYTSLILGYCKIHELGDA-YKVFEIMPQEGCLRNEVSYTNLIHGFC 271

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
            +GKI EA ELF +M+   C P V TYT L+   C+     EA++ FEEM   G+EPNV+
Sbjct: 272 EVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVY 331

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY+ L+D  CK G   + ME+L  M+ K    ++V ++ L++G CK G +++A+ +LD M
Sbjct: 332 TYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSM 391

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           KL  + P++  Y ++I  FC       A   L++M    ++PN +T+       NT++ G
Sbjct: 392 KLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTY-------NTLIHG 444

Query: 383 LCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LCK    + A++++  M       D  T+ + I C CK G + ++ ++ + L       +
Sbjct: 445 LCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEAN 504

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           E  ++A++       K   A  L    L   C
Sbjct: 505 EFLYTALIDGYCKAEKFSDAHLLFKRMLFEGC 536



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 204/423 (48%), Gaps = 9/423 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D+ T++ +I      ++   A  + + + +E C   E  + ++  G+  V +  +A
Sbjct: 220 GFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEA 279

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +MKE GC P   +Y  ++A   E  +   A +F+  M E GI+P V +  VLI  
Sbjct: 280 LELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDY 339

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G MD   ++   M  +G       +  LI+G C+ G + +A  +   M+     P
Sbjct: 340 FCK-VGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCP 398

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  LI G C+ KS++ AM L  +M    + PN+ TY++L+ GLCK      A  L 
Sbjct: 399 NSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLH 458

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +MI     P+  T+   ++ LCK GK+++A ++ + +K +  + +  LY  +I  +C  
Sbjct: 459 HLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKA 518

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            K+ +A      M+  G  PN +T+       N ++ GL K      A  +   M     
Sbjct: 519 EKFSDAHLLFKRMLFEGCFPNSITF-------NVLLDGLRKEGKVEDAMSLVDVMGKFDA 571

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
                TY+ LI    ++ D  ++   +D+++  GC P+  T++A + A   + ++ +A E
Sbjct: 572 KPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEE 631

Query: 464 LLL 466
           +++
Sbjct: 632 MVV 634



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/512 (22%), Positives = 220/512 (42%), Gaps = 91/512 (17%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   +  T++++I       +     ++L  + ++    +   F ++  GY +     D
Sbjct: 324 NGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMED 383

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V D MK     P  ++Y  ++     +  +  A      M E  + P + + N LI 
Sbjct: 384 AICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIH 443

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +  +D+A+++   M   G  PD  T+   I+ LC++GK+ +A ++F+ ++ K   
Sbjct: 444 GLCK-ARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAE 502

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
                YT+LI+G C+++   +A  LF+ M  +G  PN  T++ L+DGL K G    AM L
Sbjct: 503 ANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSL 562

Query: 284 -----------------------------------LQMMISKRHRPNIVTYSTLLNGLCK 308
                                              L  MIS   +PN+VTY+  +   C+
Sbjct: 563 VDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCR 622

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           +G+L EA E++ ++K +G+  D+ +Y  +++ +  IG+   A   L  M   G  P+R T
Sbjct: 623 QGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQT 682

Query: 369 ----------------------------------WSL--------------------HIR 374
                                             W +                    ++ 
Sbjct: 683 YSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVN 742

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            ++ +++GLCK +  + AF+++  M+   IS     ++SL++  CK G   ++ R++D +
Sbjct: 743 TYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSM 802

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +    L    ++  ++  L+++    +A E+ 
Sbjct: 803 MEYNHLAHLESYKLLVCGLFEQGNQEKAEEIF 834



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 185/422 (43%), Gaps = 35/422 (8%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +GF  D  TF   I  L    +   A  + + + ++  +  E ++ ++  GY +  +  D
Sbjct: 464 DGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSD 523

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F +M   GC P   ++  +L  L +E +++ A      M +   +P V +  +LI+
Sbjct: 524 AHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIE 583

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            + + S   D A     +M + GC P+  TY   I   CR G++ EA+E+  +++ +   
Sbjct: 584 EILRESD-FDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGIL 642

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME- 282
                Y  L+N       ++ A  +   M   G EP+  TYS L+  L     + + M  
Sbjct: 643 LDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGL 702

Query: 283 -------------------------LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
                                    L + M+ +   PN+ TYS L+ GLCK   L  A  
Sbjct: 703 DLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFR 762

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           + + MK  G+ P   ++  ++S  C +G ++EA   LD M    +  N L    H+  + 
Sbjct: 763 LFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSM----MEYNHLA---HLESYK 815

Query: 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            +V GL +  +  +A +++ S+ +   + D + +  L+    +KG + + +++ D +   
Sbjct: 816 LLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKT 875

Query: 437 GC 438
           GC
Sbjct: 876 GC 877



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 161/393 (40%), Gaps = 69/393 (17%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DIT 84
           V +A  +F+S   ++A     +   ++ +I     A +F  A  L  R+  E C    IT
Sbjct: 486 VEQAHQVFESLKEKHAEA---NEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSIT 542

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            ++ L   R  G+V    DAM + D M +F  +PT  +Y  ++  ++ E+    A  F  
Sbjct: 543 FNVLLDGLRKEGKVE---DAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLD 599

Query: 145 HMREIGIQPCVASLNVLIKALCKNS----------------------------------G 170
            M   G QP V +    IKA C+                                    G
Sbjct: 600 QMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIG 659

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGL-----------------------CRLGKI 207
            +D+AF +   M + GC P   TY  L+  L                         + KI
Sbjct: 660 QLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKI 719

Query: 208 YEAK---ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            + +    LF++M  + C P V TY+ LI GLC+ + +  A RLF  M+  G+ P+   +
Sbjct: 720 ADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIH 779

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +SL+   CK G   +A+ LL  M+   H  ++ +Y  L+ GL ++G  ++A EI   +  
Sbjct: 780 NSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLS 839

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            G   D  ++  ++      G   E +   D M
Sbjct: 840 CGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIM 872



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 153/328 (46%), Gaps = 18/328 (5%)

Query: 3   VKTMFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISK 59
           V  M K+  K T      LI     E D ++A +  D   +   +G + +  T++  I  
Sbjct: 563 VDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMIS---SGCQPNVVTYTAFIKA 619

Query: 60  LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
                +   AE+++ ++ +E   +   I+  +   YG + +   A  V  +M + GCEP+
Sbjct: 620 YCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPS 679

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI-KALCKNSGTMDAAFKI 178
            ++Y  +L  L+          F ++ +E G+   + S N+ +  A        +    +
Sbjct: 680 RQTYSILLKHLI----------FEKYNKE-GMGLDLNSTNISVDNANIWKIADFEIITML 728

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           F +M  +GC P+  TY  LI GLC++  +  A  LF  M+    SP+   + SL++  C+
Sbjct: 729 FEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCK 788

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
               EEA+RL + M       ++ +Y  L+ GL + G   +A E+ + ++S  +  + V 
Sbjct: 789 LGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVV 848

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           +  LL+GL ++G + E  ++ D M+  G
Sbjct: 849 WKVLLDGLVRKGYVDECSQLRDIMEKTG 876



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +F+KM E GC P   +Y  ++  L +   L LAFR + HM+E GI P     N L+ + C
Sbjct: 728 LFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCC 787

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G  + A ++   M          +Y  L+ GL   G   +A+E+F+ + +   +   
Sbjct: 788 K-LGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDE 846

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           V +  L++GL +   V+E  +L + M   G   +  T++ L
Sbjct: 847 VVWKVLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTML 887


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 199/390 (51%), Gaps = 28/390 (7%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE---------- 148
           H+   ++  F K+ + G +P   ++ T+L  L  E+++  A   + +M E          
Sbjct: 155 HKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALF 214

Query: 149 -----IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
                IG+ P V + N LI  LC     ++AA  +  +M  +G   D  TYGT++NG+C+
Sbjct: 215 DQMVEIGLTPVVITFNTLINGLCLEGRVLEAA-ALVNKMVGKGLHIDVVTYGTIVNGMCK 273

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
           +G    A  L  +ME     P VV Y+++I+ LC+     +A  LF EM  KG+ PNVFT
Sbjct: 274 MGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFT 333

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y+ ++DG C  G  S A  LL+ MI +   P+++T++ L++   KEGKL EA ++ D M 
Sbjct: 334 YNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEML 393

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            + + PD   Y  +I  FC   ++ +A +  D M     +P+ +T+       NT++   
Sbjct: 394 HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTF-------NTIIDVY 442

Query: 384 CKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C+    +   Q+   +  R +  ++ TY++LI  FC+  +++ +  +  E++  G  PD 
Sbjct: 443 CRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDT 502

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNK 472
            T + ++    +  K+ +A EL  +  M+K
Sbjct: 503 ITCNILLYGFCENEKLEEALELFEVIQMSK 532



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 196/403 (48%), Gaps = 13/403 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             G   D  T+  +++ +      + A +LL ++ +        I+ +I     +     
Sbjct: 254 GKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 313

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F +M E G  P   +Y  ++       +   A R  R M E  I P V + N LI
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  K  G +  A K+  EM +R   PD+ TY ++I G C+  +  +AK +F  M     
Sbjct: 374 SASVK-EGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----A 428

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP VVT+ ++I+  C++K V+E M+L  E+  +G+  N  TY++L+ G C+    + A +
Sbjct: 429 SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 488

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L Q MIS    P+ +T + LL G C+  KL+EA+E+ + +++  +  D   Y  II   C
Sbjct: 489 LFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMC 548

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
              K  EA +    + + G+ P+       ++ +N ++ G C K+  + A  ++  M++ 
Sbjct: 549 KGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMISGFCGKSAISDANVLFHKMKDN 601

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               D+ TY++LI    K G+I KS  ++ E+  +G   D  T
Sbjct: 602 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 644



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 183/367 (49%), Gaps = 13/367 (3%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R L+A  + +KM   G      +Y T++  + +    K A      M E  I+P V   +
Sbjct: 241 RVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYS 300

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I  LCK+    DA + +F EM  +G  P+ +TY  +I+G C  G+  +A+ L ++M  
Sbjct: 301 AIIDRLCKDGHHSDAQY-LFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE 359

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +  +P V+T+ +LI+   +   + EA +L +EM  + + P+  TY+S++ G CK      
Sbjct: 360 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 419

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  +  +M S    P++VT++T+++  C+  ++ E +++L  +  +GL  +   Y  +I 
Sbjct: 420 AKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 475

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
            FC++     A +   EM+  G+ P+ +T        N ++ G C+ +    A +++  +
Sbjct: 476 GFCEVDNLNAAQDLFQEMISHGVCPDTITC-------NILLYGFCENEKLEEALELFEVI 528

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           +   I +D++ Y+ +I   CK   + ++  +   L + G  PD  T++ +++    +  +
Sbjct: 529 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAI 588

Query: 459 RQAAELL 465
             A  L 
Sbjct: 589 SDANVLF 595



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 181/378 (47%), Gaps = 26/378 (6%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  FD M       T      V+ + V  N+  +A   YR M    I   + S N+LI
Sbjct: 89  DAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI--------------- 207
           K  C +   +  +   F ++   G  PD  T+ TL++GLC   +I               
Sbjct: 149 KCFC-DCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGF 207

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  LF +M     +P V+T+ +LINGLC    V EA  L  +M  KG+  +V TY ++
Sbjct: 208 LEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI 267

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++G+CK G +  A+ LL  M     +P++V YS +++ LCK+G   +A  +   M  +G+
Sbjct: 268 VNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGI 327

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            P+   Y  +I  FC  G++ +A   L +M+   I P+ LT++    I  +V +G     
Sbjct: 328 APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFN--ALISASVKEG----K 381

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
              A ++   M +R I  D++TY+S+I  FCK      +  + D +      PD  T++ 
Sbjct: 382 LFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNT 437

Query: 448 VMTALWDRRKMRQAAELL 465
           ++      +++ +  +LL
Sbjct: 438 IIDVYCRAKRVDEGMQLL 455



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 7/313 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI-FLSICRGYGRVHRPLDAMRV 107
           D  TF+ +IS  V   +   AE L D +   +C   + + + S+  G+ + +R  DA  +
Sbjct: 365 DVLTFNALISASVKEGKLFEAEKLCDEM-LHRCIFPDTVTYNSMIYGFCKHNRFDDAKHM 423

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           FD M      P   ++ T++ +     ++    +  R +   G+     + N LI   C+
Sbjct: 424 FDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCE 479

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
               ++AA  +F+EM + G  PD+ T   L+ G C   K+ EA ELF+ ++        V
Sbjct: 480 -VDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTV 538

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            Y  +I+G+C+   V+EA  LF  +   GVEP+V TY+ ++ G C     S A  L   M
Sbjct: 539 AYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKM 598

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
               H P+  TY+TL+ G  K G++ +++E++  M+  G   DA          C +   
Sbjct: 599 KDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICRVSDE 658

Query: 348 QEAANFLDEMVLG 360
           +   N+L   + G
Sbjct: 659 EIIENYLRPKING 671



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 146/294 (49%), Gaps = 24/294 (8%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +I    R+ +   A  L+++ME +     + ++  LI   C    +  ++  F ++   G
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH---------------RPNIVTYST 301
            +P+V T+++L+ GLC     S+A+ L   M+                    P ++T++T
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNT 231

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L+NGLC EG++ EA  ++++M  +GL  D   YG I++  C +G  + A N L +M    
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKK 420
           I P+       + I++ ++  LCK   +   Q   S M  + I+ +  TY+ +I  FC  
Sbjct: 292 IKPD-------VVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSF 344

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           G    + R++ +++     PD  T++A+++A     K+ + AE L  E++++C+
Sbjct: 345 GRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFE-AEKLCDEMLHRCI 397



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 1/239 (0%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           FD A   +      D  TF+ +I     A +      LL  +++         + ++  G
Sbjct: 417 FDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHG 476

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           +  V     A  +F +M   G  P   +   +L    E  +L+ A   +  ++   I   
Sbjct: 477 FCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLD 536

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             + N++I  +CK S  +D A+ +F  +P  G  PD  TY  +I+G C    I +A  LF
Sbjct: 537 TVAYNIIIHGMCKGS-KVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLF 595

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            +M+     P   TY +LI G  ++  +++++ L  EMRS G   + FT     + +C+
Sbjct: 596 HKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICR 654


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 217/441 (49%), Gaps = 27/441 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPA-----EDLLDRVNKEKCDITEDIFLS--IC-RGY 95
           NGF H   ++ ++   L  A  +  A     E +L +   E+CD+ ++++ +  +C  G+
Sbjct: 4   NGFNHTIESYCIVAHILFCARMYYDANSILREIVLSKAELEECDVFDELWSTRNVCVPGF 63

Query: 96  GRVHRPL----------DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           G                +A + F KMK F   P  +S   +L    +  +     RF++ 
Sbjct: 64  GVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKD 123

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   G +P V + N++I  + K  G ++AA  +F EM  RG  PD+ TY ++I+G  ++G
Sbjct: 124 MIGAGSKPTVFTYNIMIDCMWK-EGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVG 182

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ +    F+EM++ +C P V+TY SLIN  C+S  + + +  + EM+  G++PNV +YS
Sbjct: 183 RLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYS 242

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+D  CK     QA++    M    H PN  TY++L++  CK G L +A  + + M   
Sbjct: 243 TLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEV 302

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G++ +   Y  +I   CD  + +EA     +MV  G+ PN  ++       N ++ G  K
Sbjct: 303 GVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASY-------NALIHGFVK 355

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             + +RA ++   ++ R I  D L Y + I   C    I  +  +++E+  +G   +   
Sbjct: 356 AKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLI 415

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           ++ +M A +      +   LL
Sbjct: 416 YTTLMDAYFKSGNPTEGLHLL 436



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 214/426 (50%), Gaps = 15/426 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+++MI  +        A  L + +           + S+  GYG+V R  D +  F++M
Sbjct: 135 TYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEM 194

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K   CEP   +Y +++    +  +L     FYR M++ G++P V S + L+ A CK    
Sbjct: 195 KSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKED-M 253

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           M  A K + +M   G  P+ +TY +L++  C++G + +A  L  EM        VVTYT+
Sbjct: 254 MQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTA 313

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+GLC ++ ++EA +LF +M + GV PN+ +Y++L+ G  K     +A+ELL  +  + 
Sbjct: 314 LIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 373

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+++ Y T + GLC   K++ A  +++ M+  G+K +  +Y  ++  +   G   E  
Sbjct: 374 IQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGL 433

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR-SISVDSLT 409
           + L+EM         L   + +     ++ GLCK    ++A   +  M N   +  ++  
Sbjct: 434 HLLEEM-------QELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAV 486

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           Y+++I   CK+  +  +  + +++  +G +PD   ++++M        ++Q   L  L L
Sbjct: 487 YTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDG-----NLKQGNMLEALAL 541

Query: 470 MNKCVE 475
            +K  E
Sbjct: 542 RDKMAE 547



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 156/341 (45%), Gaps = 43/341 (12%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA R+ ++M E G E    +Y  ++  L +  ++K A + +  M   G+ P +AS N LI
Sbjct: 291 DAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALI 350

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K +  MD A ++  E+  RG  PD   YGT I GLC L KI  AK +  EM+    
Sbjct: 351 HGFVK-AKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGI 409

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               + YT+L++   +S +  E + L EEM+    E  V T+  L+DGLCK    S+A++
Sbjct: 410 KANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAID 469

Query: 283 LLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
               M +    +PN   Y+ +++GLCKE +++ A  + ++M  +GL PD   Y  ++   
Sbjct: 470 YFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGN 529

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
              G   EA    D+M   G                                        
Sbjct: 530 LKQGNMLEALALRDKMAEIG---------------------------------------- 549

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
            + +D L Y+SL+  F +   + K+   ++E++ +  LPDE
Sbjct: 550 -MKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDE 589



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 2/300 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I  L  A + + AE L  ++           + ++  G+ +      A+ + +++
Sbjct: 310 TYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL 369

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K  G +P    Y T +  L    +++ A      M+E GI+        L+ A  K SG 
Sbjct: 370 KGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFK-SGN 428

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYT 230
                 +  EM          T+  LI+GLC+   + +A + F  M       P    YT
Sbjct: 429 PTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYT 488

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++I+GLC+   V+ A  LFE+M  +G+ P+   Y+SLMDG  K G   +A+ L   M   
Sbjct: 489 AMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEI 548

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             + +++ Y++L+ G  +  +LQ+A   L+ M  + + PD  L   ++    ++G   EA
Sbjct: 549 GMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLCIGVLKKHYELGCIDEA 608



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 128/282 (45%), Gaps = 3/282 (1%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           ++++ +I   V A     A +LL+ +          ++ +   G   + +   A  V ++
Sbjct: 344 ASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNE 403

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M+E G +     Y T++    +             M+E+  +  V +  VLI  LCKN  
Sbjct: 404 MQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNK- 462

Query: 171 TMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
            +  A   F  M N  G  P++  Y  +I+GLC+  ++  A  LF++M  +   P    Y
Sbjct: 463 LVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAY 522

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           TSL++G  +  ++ EA+ L ++M   G++ ++  Y+SL+ G  +     +A   L+ MI 
Sbjct: 523 TSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIG 582

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR-MKLQGLKPD 330
           +   P+ V    +L    + G + EAV +    MK Q L  D
Sbjct: 583 EEILPDEVLCIGVLKKHYELGCIDEAVGLQSYLMKHQLLTSD 624



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 2/206 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG + +   ++ ++     +        LL+ + +   ++T   F  +  G  +      
Sbjct: 407 NGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSK 466

Query: 104 AMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           A+  F +M  +FG +P    Y  ++  L +ENQ+K A   +  M + G+ P   +   L+
Sbjct: 467 AIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLM 526

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K  G M  A  +  +M   G   D   Y +L+ G  +  ++ +A+   +EM  +  
Sbjct: 527 DGNLKQ-GNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEI 585

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRL 248
            P  V    ++    +   ++EA+ L
Sbjct: 586 LPDEVLCIGVLKKHYELGCIDEAVGL 611



 Score = 38.1 bits (87), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K V+KA+  F   + ++  G + + + ++ MI  L   NQ + A  L +++ +E      
Sbjct: 462 KLVSKAIDYFGRMSNDF--GLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDR 519

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + S+  G  +    L+A+ + DKM E G +    +Y +++    + NQL+ A  F   
Sbjct: 520 TAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEE 579

Query: 146 M 146
           M
Sbjct: 580 M 580


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 189/378 (50%), Gaps = 11/378 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + +G  R     +AM +  +M      P   SY T++  L +  +LK A      M   G
Sbjct: 4   VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG 63

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
             P   +   L+  LCK+ G MD A ++   M  +G   D   YGTLI+G C  G +   
Sbjct: 64  CFPNSVTCTTLMDGLCKD-GRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRG 122

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           KELF EM  K  S  VVTY+ L++GLC+    +EA  +   M   G+ P+V TY+ L+DG
Sbjct: 123 KELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDG 182

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LCK G ++ AM+LL +M+ K   P+ VTY+ LL+GLCKEG + +A +IL  M  +G K D
Sbjct: 183 LCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 242

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGG--ITPNRLTWSLHIRIHNTVVQGLCKTDP 388
              Y  ++   CD GK  EA    + M      + PN  T+       N ++ GLCK   
Sbjct: 243 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF-------NMLIGGLCKEGR 295

Query: 389 -NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
             +A +++  M  +    + +TY+ L+    K G I ++  +  +++  G +P+  T+S 
Sbjct: 296 LTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSI 355

Query: 448 VMTALWDRRKMRQAAELL 465
           ++      R +  A  L 
Sbjct: 356 LIDGFCKMRMLNIAKGLF 373



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 171/310 (55%), Gaps = 11/310 (3%)

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           +N+++K LC+N G  + A  + REM  +  +PD  +Y TLINGLC+  K+ EA  L  EM
Sbjct: 1   MNIVLKGLCRNGGVFE-AMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEM 59

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           E   C P  VT T+L++GLC+   ++EAM L E M+ KG + +V  Y +L+ G C  G  
Sbjct: 60  EAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNL 119

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +  EL   M+ K    N+VTYS L++GLC+ G+ +EA  +L+ M   G+ PD   Y  +
Sbjct: 120 DRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGL 179

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYL 396
           I   C  G+   A + L+ MV  G  P+ +T+       N ++ GLCK      AF++  
Sbjct: 180 IDGLCKDGRATHAMDLLNLMVEKGEEPSNVTY-------NVLLSGLCKEGLVIDAFKILR 232

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV-LDGCL-PDEGTWSAVMTALWD 454
            M  +    D +TY++L+   C KG + ++ ++ + +   + CL P+  T++ ++  L  
Sbjct: 233 MMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCK 292

Query: 455 RRKMRQAAEL 464
             ++ +A ++
Sbjct: 293 EGRLTKAVKI 302



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 201/388 (51%), Gaps = 19/388 (4%)

Query: 37  SATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKCDITEDIFLSICR 93
           +A AE+  G   D  T++ +I  L    +   A DLL+ +    +E  ++T ++ LS   
Sbjct: 162 NAMAEH--GIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLS--- 216

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM--REIGI 151
           G  +    +DA ++   M E G +    +Y T++  L ++ ++  A + +  M   E  +
Sbjct: 217 GLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCL 276

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P V + N+LI  LCK  G +  A KI R+M  +G   +  TY  L+ G  + GKI EA 
Sbjct: 277 EPNVFTFNMLIGGLCK-EGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAM 335

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           EL+K++      P   TY+ LI+G C+ + +  A  LF EMR+ G+ P +F Y++LM  L
Sbjct: 336 ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 395

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
           CK G   QA  L Q M +    P+I++++T+++G  K G  Q   E+  +M   GL+PDA
Sbjct: 396 CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDA 455

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNR 390
             +  +I+    +G+  EA + L+ MV  G TP+ L       +++++++GL  K D   
Sbjct: 456 LTFSTLINRLSKLGELDEAKSALERMVASGFTPDAL-------VYDSLLKGLSSKGDTTE 508

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFC 418
              +   M  +   +D    S+++TC C
Sbjct: 509 IINLLHQMAAKGTVLDRKIVSTILTCLC 536



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 198/424 (46%), Gaps = 11/424 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D   +  +IS   +       ++L D +  +        +  +  G  R+ +  +A
Sbjct: 98  GFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEA 157

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             V + M E G  P   +Y  ++  L ++ +   A      M E G +P   + NVL+  
Sbjct: 158 NTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 217

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKAC- 222
           LCK    +D AFKI R M  +G   D  TY TL+ GLC  GK+ EA +LF  M + + C 
Sbjct: 218 LCKEGLVID-AFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCL 276

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V T+  LI GLC+   + +A+++  +M  KG   N+ TY+ L+ G  K G   +AME
Sbjct: 277 EPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAME 336

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + ++     PN  TYS L++G CK   L  A  +   M+  GL P    Y  +++  C
Sbjct: 337 LWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLC 396

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
             G  ++A +   EM      P+ +++       NT++ G  K  D     ++ + M   
Sbjct: 397 KEGSLEQAKSLFQEMGNANCEPDIISF-------NTMIDGTLKAGDFQFVKELQMKMVEM 449

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D+LT+S+LI    K G++ ++   ++ +V  G  PD   + +++  L  +    + 
Sbjct: 450 GLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEI 509

Query: 462 AELL 465
             LL
Sbjct: 510 INLL 513



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 187/396 (47%), Gaps = 11/396 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  +++ +I+ L  A + + A  LL  +    C        ++  G  +  R  +AM + 
Sbjct: 32  DIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELL 91

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + MK+ G +     Y T+++       L      +  M   GI   V + + L+  LC+ 
Sbjct: 92  EAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCR- 150

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G    A  +   M   G  PD  TY  LI+GLC+ G+   A +L   M  K   P+ VT
Sbjct: 151 LGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVT 210

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  L++GLC+   V +A ++   M  KG + +V TY++LM GLC  G   +A++L   M 
Sbjct: 211 YNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMF 270

Query: 289 SKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
              +   PN+ T++ L+ GLCKEG+L +AV+I  +M  +G   +   Y  ++      GK
Sbjct: 271 DNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGK 330

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
            +EA     +++  G  PN  T+S+       ++ G CK    N A  ++  MR   ++ 
Sbjct: 331 IKEAMELWKQVLDLGFVPNSFTYSI-------LIDGFCKMRMLNIAKGLFCEMRTHGLNP 383

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
               Y++L+   CK+G + ++  +  E+    C PD
Sbjct: 384 ALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPD 419



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 43/295 (14%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR-VNKEKCD--IT 84
           V++AL +F+S   +  N    +  TF+++I  L    +   A  +  + V K  C   +T
Sbjct: 259 VDEALKLFNS-MFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVT 317

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            ++ L  C   G++    +AM ++ ++ + G  P   +Y  ++    +   L +A   + 
Sbjct: 318 YNMLLGGCLKAGKIK---EAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFC 374

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD-------------- 190
            MR  G+ P +   N L+ +LCK  G+++ A  +F+EM N  C PD              
Sbjct: 375 EMRTHGLNPALFDYNTLMASLCK-EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKA 433

Query: 191 ---------------------SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
                                + T+ TLIN L +LG++ EAK   + M     +P  + Y
Sbjct: 434 GDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVY 493

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            SL+ GL       E + L  +M +KG   +    S+++  LC        MELL
Sbjct: 494 DSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELL 548



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 377 NTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N V++GLC+      A  +   M  +S+S D ++Y++LI   CK   + ++  ++ E+  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            GC P+  T + +M  L    +M +A ELL
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELL 91


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 200/410 (48%), Gaps = 44/410 (10%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G  R  R  DA+ VFD+M E    P   +Y T++   ++   L+  FR    M   G
Sbjct: 21  VIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG 80

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY---------------- 194
           ++P   + NVL+  LC+ +G M     +  EM ++   PD +TY                
Sbjct: 81  LKPNAITYNVLLSGLCR-AGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 139

Query: 195 -------------------GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
                                L+NGLC+ GK+  A+E+ + +      PT V Y +LING
Sbjct: 140 LSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLING 199

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            CQ+  +E A   F +M+S+ ++P+  TY++L++GLCK    + A +LL  M      P 
Sbjct: 200 YCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPT 259

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           + T++TL++   + G+L++   +L  M+  GLKP+   YG I++ FC  GK  EA   LD
Sbjct: 260 VETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILD 319

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLI 414
           +M    + PN        +++N ++    +  PN +AF +   M++  IS   +TY+ LI
Sbjct: 320 DMFHKDVLPN-------AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 372

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
              C +  I ++  I++ L     +PD  +++ +++A   R  + +A +L
Sbjct: 373 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDL 422



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 221/456 (48%), Gaps = 19/456 (4%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKCDITEDI 87
           A+ +FD  T         ++ T++ MI   +          L D++     +   IT ++
Sbjct: 34  AVEVFDEMTER---AVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNV 90

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
            LS   G  R  R  +   + D+M      P   +Y  +   L      K     +    
Sbjct: 91  LLS---GLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 147

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + G+     + ++L+  LCK+ G +  A ++ + + N G  P    Y TLING C+ G++
Sbjct: 148 KNGVTIGDYTCSILLNGLCKD-GKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 206

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A   F +M+++   P  +TY +LINGLC+++ +  A  L  EM+  GV P V T+++L
Sbjct: 207 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 266

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +D   + G   +   +L  M     +PN+V+Y +++N  CK GK+ EAV ILD M  + +
Sbjct: 267 IDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDV 326

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KT 386
            P+A +Y  II  + + G   +A   +++M   GI+P+ +T++L       +++GLC ++
Sbjct: 327 LPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL-------LIKGLCNQS 379

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A ++  S+ N  +  D+++Y++LI+  C +G+I K+  +   +   G      T+ 
Sbjct: 380 QISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYH 439

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            +++ L    ++ +  E L  ++M   V     I N
Sbjct: 440 QLISGLGGAGRLNE-MEYLYQKMMQNNVVPSNAIHN 474



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 175/354 (49%), Gaps = 11/354 (3%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   SY  V+A +    +   A   +  M E  + P   + N +I    K  G ++A F+
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIK-GGDLEAGFR 71

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  +M   G  P++ TY  L++GLCR G++ E   L  EM ++   P   TY+ L +GL 
Sbjct: 72  LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 131

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           ++   +  + LF +    GV    +T S L++GLCK G  S A E+LQ +++    P  V
Sbjct: 132 RNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRV 191

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            Y+TL+NG C+ G+L+ A     +MK + +KPD   Y  +I+  C   +   A + L EM
Sbjct: 192 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM 251

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
              G+ P   T+       NT++    +T    + F V   M+   +  + ++Y S++  
Sbjct: 252 QDNGVNPTVETF-------NTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNA 304

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           FCK G I ++  I+D++     LP+   ++A++ A  +     QA   +L+E M
Sbjct: 305 FCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQA--FILVEKM 356



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 165/342 (48%), Gaps = 8/342 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG    + T S++++ L    +   AE++L  +       T  I+ ++  GY +      
Sbjct: 149 NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEG 208

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A   F +MK    +P   +Y  ++  L +  ++  A      M++ G+ P V + N LI 
Sbjct: 209 AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLID 268

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A  + +G ++  F +  EM   G  P+  +YG+++N  C+ GKI EA  +  +M  K   
Sbjct: 269 AYGR-TGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 327

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    Y ++I+   +    ++A  L E+M+S G+ P++ TY+ L+ GLC     S+A E+
Sbjct: 328 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 387

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  + + R  P+ V+Y+TL++  C  G + +A+++  RM   G+K     Y ++IS    
Sbjct: 388 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 447

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            G+  E      +M+   + P+         IHN +V+   K
Sbjct: 448 AGRLNEMEYLYQKMMQNNVVPSN-------AIHNIMVEAYSK 482



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 131/271 (48%), Gaps = 1/271 (0%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G  +  R  +A  +  +M++ G  PT +++ T++       QL+  F     M+
Sbjct: 228 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 287

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G++P V S   ++ A CKN G +  A  I  +M ++   P++  Y  +I+     G  
Sbjct: 288 ENGLKPNVVSYGSIVNAFCKN-GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPN 346

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  L ++M++   SP++VTY  LI GLC    + EA  +   + +  + P+  +Y++L
Sbjct: 347 DQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTL 406

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +   C  G   +A++L Q M     +  + TY  L++GL   G+L E   +  +M    +
Sbjct: 407 ISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 466

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
            P   ++  ++  +   G   +A +   EM+
Sbjct: 467 VPSNAIHNIMVEAYSKYGNEIKAEDLRKEML 497



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 39/284 (13%)

Query: 47  RH---DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           RH   D+ T++ +I+ L  A +   A+DLL  +     + T + F ++   YGR  +   
Sbjct: 219 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 278

Query: 104 AMRVFDKMKEFGCEPTPKSYITVL-------------AIL-------------------- 130
              V  +M+E G +P   SY +++             AIL                    
Sbjct: 279 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 338

Query: 131 --VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
             VE      AF     M+  GI P + + N+LIK LC N   +  A +I   + N    
Sbjct: 339 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLC-NQSQISEAEEIINSLSNHRLI 397

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD+ +Y TLI+  C  G I +A +L + M       TV TY  LI+GL  +  + E   L
Sbjct: 398 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 457

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           +++M    V P+   ++ +++   K G   +A +L + M+ KR+
Sbjct: 458 YQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRN 501


>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 451

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 199/376 (52%), Gaps = 12/376 (3%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           +  +V +LI ++ D   A  IFD A+ +    FRH+ ST+ ++I K   +  F   +DLL
Sbjct: 41  SPTRVQKLIASQSDPLLAKEIFDYASLQ--PNFRHNYSTYLILILKFGRSKHFSLLDDLL 98

Query: 74  DRVNKEKCD-ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV- 131
            R+  E    IT  +F  + + YG  + P  A+  F  M +F  +P  K    +L ILV 
Sbjct: 99  RRLKSESSQPITPTLFSYLIKIYGEANLPDKALNTFYIMLQFNIKPLTKHLNRILDILVS 158

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
             N L+ AF  ++   + G+ P   S N+L++A C N G +  A+ +F +M  R   PD 
Sbjct: 159 HRNYLRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLN-GDISIAYTLFNKMFKRDVVPDI 217

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            +Y  L+  LCR  ++  A +LF++M  K   P   TYT+L+N LC+ K + EA +L   
Sbjct: 218 QSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCR 277

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M+ KG  P++  Y++++ G C+ G +  A +++  M +    PN+V+Y TL+NGLC  G 
Sbjct: 278 MKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGM 337

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           L EA + ++ M  +G  P   +   ++  FC++G+ +EA   L + +     P++ TW +
Sbjct: 338 LDEATKYVEEMLSKGFSPHFAVIHALVKGFCNVGRIEEACGVLTKSLEHREAPHKDTWMI 397

Query: 372 HIRIHNTVVQGLCKTD 387
                  +V  +C+ D
Sbjct: 398 -------IVPQICEVD 406



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 113/240 (47%), Gaps = 11/240 (4%)

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           K   ++  +PT+ +Y   I G  ++   ++A+  F  M    ++P     + ++D L   
Sbjct: 102 KSESSQPITPTLFSYLIKIYG--EANLPDKALNTFYIMLQFNIKPLTKHLNRILDILVSH 159

Query: 275 -GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                 A +L +        P+  +Y+ L+   C  G +  A  + ++M  + + PD   
Sbjct: 160 RNYLRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQS 219

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AF 392
           Y  ++   C   +   A +  ++M+  G  P+  T++       T++  LC+    R A+
Sbjct: 220 YRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYT-------TLLNSLCRKKKLREAY 272

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++   M+ +  + D + Y+++I  FC++G  H + +++D++  +GCLP+  ++  ++  L
Sbjct: 273 KLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGL 332



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 107/250 (42%), Gaps = 10/250 (4%)

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT-YSSLMDGLCKGGCSSQAMELLQM 286
           TY  LI    +SK       L   ++S+  +P   T +S L+    +     +A+    +
Sbjct: 77  TYLILILKFGRSKHFSLLDDLLRRLKSESSQPITPTLFSYLIKIYGEANLPDKALNTFYI 136

Query: 287 MISKRHRPNIVTYSTLLNGLCKE-GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           M+    +P     + +L+ L      L+ A ++       G+ PD   Y  ++  FC  G
Sbjct: 137 MLQFNIKPLTKHLNRILDILVSHRNYLRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLNG 196

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSIS 404
               A    ++M    + P+       I+ +  ++Q LC K+  N A  ++  M N+   
Sbjct: 197 DISIAYTLFNKMFKRDVVPD-------IQSYRILMQALCRKSQVNGAVDLFEDMLNKGFV 249

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            DS TY++L+   C+K  + ++ +++  + + GC PD   ++ V+       +   A ++
Sbjct: 250 PDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKV 309

Query: 465 LLLELMNKCV 474
           +     N C+
Sbjct: 310 IDDMQANGCL 319


>gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 232/474 (48%), Gaps = 22/474 (4%)

Query: 6   MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ 65
           ++ W  ++T   +  LI  + D + +L IF  A    +    H       +  KL  A +
Sbjct: 47  IYPWPRRLTPHNLASLISRQHDPDLSLQIFHHAHPSLS----HAPQPLHALFLKLSRARR 102

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT 125
           F   E LL  +        E    ++ R YG   +PL A+R+F K +  G     +S   
Sbjct: 103 FYHLESLLTHLPNPP---PEPPLTTLIRAYGLAGKPLSALRIFLKFQPLGV----RSLNA 155

Query: 126 VLAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
           +L  LV+  + +LA   ++   E   + P V S N+L+KALCK +  +D A ++  EM  
Sbjct: 156 LLNALVQNKRHRLAHSVFKSSTEKFRLVPNVVSCNILLKALCKRN-EVDVAVRVLDEMSL 214

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
            G  P+  +Y T++ G    G +  A  +F E+  K   P V +YT L++G C+   + +
Sbjct: 215 MGLVPNVVSYSTVLGGFVFKGDMESAMRVFGEILDKGWMPDVTSYTVLMSGFCRLGKLVD 274

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A+R+ + M    V+P+  TY  +++  CKG    +A+ LL+ M+ K   P+ V    +++
Sbjct: 275 AIRMMDLMEENRVQPSEVTYGVMIEAYCKGRKPGEAVNLLEDMVEKGLVPSSVLCCKVVD 334

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
            LC+EG ++ A E+   +  +G +    +   I+   C  GK  EA   LDE+  G +  
Sbjct: 335 LLCEEGSVERACEVWRGVVRKGWRVGGAVVSTIVHWLCKEGKVVEARGVLDELEKGEVA- 393

Query: 365 NRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                   +  +NT++ G+C +     A +++  M  +    ++ TY+ L+  FCK GD+
Sbjct: 394 -------SLMTYNTLIAGMCERGQLCEAGRLWDEMVEKGRVPNAFTYNVLMKGFCKVGDV 446

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
            ++ R+++E+V  GCLP++ T+S ++  +      ++  + ++L  M   V+ E
Sbjct: 447 KEAIRVLEEMVESGCLPNKSTFSILVDGISLSGGKKEEIDKVVLLAMTTGVDGE 500



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 377 NTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N +++ LCK  + + A +V   M    +  + ++YS+++  F  KGD+  + R+  E++ 
Sbjct: 190 NILLKALCKRNEVDVAVRVLDEMSLMGLVPNVVSYSTVLGGFVFKGDMESAMRVFGEILD 249

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            G +PD  +++ +M+      K+  A  ++ L   N+   +EV
Sbjct: 250 KGWMPDVTSYTVLMSGFCRLGKLVDAIRMMDLMEENRVQPSEV 292


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 218/415 (52%), Gaps = 18/415 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI----FLSICRGYGRVHRPLDAMRV 107
            ++ MI    SA +F  A  LL+R  + K  I   I     L+  R  G+V    +A+RV
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLER-QRAKGSIPSVIAYNCILTCLRKMGKVD---EALRV 365

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           F++MK+    P   +Y  ++ +L    +L  AF     M++ G+ P V ++N+++  LCK
Sbjct: 366 FEEMKK-DAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
            S  +D A  IF +M  + CTPD  T+ +LI+GL ++G++ +A +++++M    C    +
Sbjct: 425 -SQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSI 483

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            YTSLI         E+  +++++M ++   P++   ++ MD + K G   +   + + +
Sbjct: 484 VYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI 543

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
            S+R  P+  +YS L++GL K G   E  E+   MK QG   D   Y  +I  FC  GK 
Sbjct: 544 KSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            +A   L+EM   G  P  +T+        +V+ GL K D  + A+ ++   +++ I ++
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYG-------SVIDGLAKIDRLDEAYMLFEEAKSKRIELN 656

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            + YSSLI  F K G I ++  I++EL+  G  P+  TW++++ AL    ++ +A
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEA 711



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 207/415 (49%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T ++M+ +L  + +   A  + ++++ + C   E  F S+  G G+V R  DA ++++KM
Sbjct: 414 TVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKM 473

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            +  C      Y +++       + +   + Y+ M      P +  LN  +  + K +G 
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFK-AGE 532

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            +    +F E+ +R   PD+ +Y  LI+GL + G   E  ELF  M+ + C      Y  
Sbjct: 533 PEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNI 592

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+   V +A +L EEM++KG EP V TY S++DGL K     +A  L +   SKR
Sbjct: 593 VIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR 652

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              N+V YS+L++G  K G++ EA  IL+ +  +GL P+   +  ++       +  EA 
Sbjct: 653 IELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEAL 712

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
                M     TPN++T+ +       ++ GLCK    N+AF  +  M+ + +   +++Y
Sbjct: 713 VCFQSMKELKCTPNQVTYGI-------LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISY 765

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I+   K G+I ++  + D    +G +PD   ++A++  L +  +   A  L 
Sbjct: 766 TTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLF 820



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 187/398 (46%), Gaps = 10/398 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF    +T   M+   V AN+ R   D++  + K K       + ++   +  V+     
Sbjct: 128 GFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMM 187

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+E G EPT   + T++    +E ++  A      M+   +   +   NV I +
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G +D A+K F E+   G  PD  TY ++I  LC+  ++ EA E+F+ +E     P
Sbjct: 248 FGK-VGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVP 306

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
               Y ++I G   +   +EA  L E  R+KG  P+V  Y+ ++  L K G   +A+ + 
Sbjct: 307 CTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVF 366

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   PN+ TY+ L++ LC+ GKL  A E+ D M+  GL P+      ++   C  
Sbjct: 367 EEM-KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKS 425

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            K  EA    ++M     TP+ +T+        +++ GL K    + A+++Y  M +   
Sbjct: 426 QKLDEACAIFEQMDYKVCTPDEITFC-------SLIDGLGKVGRVDDAYKIYEKMLDSDC 478

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
             +S+ Y+SLI  F   G      +I  ++V   C PD
Sbjct: 479 RTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPD 516



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 186/420 (44%), Gaps = 49/420 (11%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  TF  +I  L    +   A  + +++    C     ++ S+ + +    R  D  +++
Sbjct: 446 DEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIY 505

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M    C P  +   T +  + +  + +     +  ++     P   S ++LI  L K 
Sbjct: 506 KDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIK- 564

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G  +  +++F  M  +GC  D+  Y  +I+G C+ GK+ +A +L +EM+TK   PTVVT
Sbjct: 565 AGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVT 624

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y S+I+GL +   ++EA  LFEE +SK +E NV  YSSL+DG  K G   +A  +L+ ++
Sbjct: 625 YGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELM 684

Query: 289 SKRHRPNI-----------------------------------VTYSTLLNGLCKEGKLQ 313
            K   PN+                                   VTY  L+NGLCK  K  
Sbjct: 685 QKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFN 744

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +A      M+ QG+KP    Y  +IS     G   EA    D     G  P+   +    
Sbjct: 745 KAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACY---- 800

Query: 374 RIHNTVVQGLCKTDPNR---AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
              N +++GL  ++ NR   AF ++   R R + + + T   L+     K D  + A IV
Sbjct: 801 ---NAMIEGL--SNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTL-HKNDCLEQAAIV 854



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/513 (23%), Positives = 226/513 (44%), Gaps = 44/513 (8%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           V+ M K+  +   +    LI A   VN + ++          G+      F+ +I     
Sbjct: 156 VQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAK 215

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSIC-RGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
             +   A  LLD +     D  + +  ++C   +G+V +   A + F +++  G +P   
Sbjct: 216 EGRVDSALSLLDEMKSSSLD-ADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEV 274

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL---------------- 165
           +Y +++ +L + N+L  A   + H+ +    PC  + N +I                   
Sbjct: 275 TYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQ 334

Query: 166 ------------------CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
                              +  G +D A ++F EM  +   P+  TY  LI+ LCR GK+
Sbjct: 335 RAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEM-KKDAAPNLSTYNILIDMLCRAGKL 393

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A EL   M+     P V T   +++ LC+S+ ++EA  +FE+M  K   P+  T+ SL
Sbjct: 394 DCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSL 453

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGL K G    A ++ + M+    R N + Y++L+      G+ ++  +I   M  Q  
Sbjct: 454 IDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNC 513

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            PD  L    + C    G+ ++     +E+      P+  ++S  I IH  +  G     
Sbjct: 514 SPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYS--ILIHGLIKAGF---- 567

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            N  ++++ SM+ +   +D+  Y+ +I  FCK G ++K+ ++++E+   G  P   T+ +
Sbjct: 568 ANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
           V+  L    ++ +A  +L  E  +K +E  V I
Sbjct: 628 VIDGLAKIDRLDEAY-MLFEEAKSKRIELNVVI 659



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 172/355 (48%), Gaps = 11/355 (3%)

Query: 100 RPLDAM-RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           R  DA+ ++  +M   G  P+  + I ++   V+ N+L+  F   ++MR+   +P  ++ 
Sbjct: 112 RNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAY 171

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
             LI A    + + D    +F++M   G  P  + + TLI G  + G++  A  L  EM+
Sbjct: 172 TTLIGAFSAVNHS-DMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK 230

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           + +    +V Y   I+   +   V+ A + F E+ + G++P+  TY+S++  LCK     
Sbjct: 231 SSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLD 290

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A+E+ + +   R  P    Y+T++ G    GK  EA  +L+R + +G  P    Y  I+
Sbjct: 291 EAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCIL 350

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           +C   +GK  EA    +EM      PN  T+       N ++  LC+    + AF++  S
Sbjct: 351 TCLRKMGKVDEALRVFEEMKKDA-APNLSTY-------NILIDMLCRAGKLDCAFELRDS 402

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           M+   +  +  T + ++   CK   + ++  I +++    C PDE T+ +++  L
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGL 457



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 153/349 (43%), Gaps = 12/349 (3%)

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
           +P P+  I VL  L + N+    FR+Y    E+   P   +  +L+ A C+N    DA  
Sbjct: 62  KPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRN---FDALD 118

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           +I  EM   G  P   T   ++    +  K+ E  ++ + M      P    YT+LI   
Sbjct: 119 QILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAF 178

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
                 +  + LF++M+  G EP V  +++L+ G  K G    A+ LL  M S     +I
Sbjct: 179 SAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADI 238

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           V Y+  ++   K GK+  A +    ++  GLKPD   Y  +I   C   +  EA    + 
Sbjct: 239 VLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEH 298

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           +      P   T++     +NT++ G       + A+ +    R +      + Y+ ++T
Sbjct: 299 LEKNRRVP--CTYA-----YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILT 351

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           C  K G + ++ R+ +E+  D   P+  T++ ++  L    K+  A EL
Sbjct: 352 CLRKMGKVDEALRVFEEMKKDAA-PNLSTYNILIDMLCRAGKLDCAFEL 399



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 19/295 (6%)

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           E+P+    P+SY    L+   CR        ++  EM      P+V T   ++    ++ 
Sbjct: 93  ELPH---CPESYNSLLLVMARCR--NFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKAN 147

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
            + E   + + MR     P    Y++L+        S   + L Q M    + P +  ++
Sbjct: 148 KLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFT 207

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL+ G  KEG++  A+ +LD MK   L  D  LY   I  F  +GK   A  F  E+   
Sbjct: 208 TLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN 267

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM-RNRSISVDSLTYSSLITCFC 418
           G+ P+ +T++  I +       LCK +  + A +++  + +NR +   +  Y+++I  + 
Sbjct: 268 GLKPDEVTYTSMIGV-------LCKANRLDEAVEMFEHLEKNRRVPC-TYAYNTMIMGYG 319

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL-LLELMNK 472
             G   ++  +++     G +P    ++ ++T L   RKM +  E L + E M K
Sbjct: 320 SAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCL---RKMGKVDEALRVFEEMKK 371



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 104/264 (39%), Gaps = 39/264 (14%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           VNKA  + +    +   GF     T+  +I  L   ++   A  L +    ++ ++   I
Sbjct: 603 VNKAYQLLEEMKTK---GFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659

Query: 88  FLSICRGYGRVHRPLDAMRV-----------------------------------FDKMK 112
           + S+  G+G+V R  +A  +                                   F  MK
Sbjct: 660 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK 719

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           E  C P   +Y  ++  L +  +   AF F++ M++ G++P   S   +I  L K +G +
Sbjct: 720 ELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK-AGNI 778

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
             A  +F      G  PDS  Y  +I GL    +  +A  LF+E   +       T   L
Sbjct: 779 AEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVL 838

Query: 233 INGLCQSKSVEEAMRLFEEMRSKG 256
           ++ L ++  +E+A  +   +R  G
Sbjct: 839 LDTLHKNDCLEQAAIVGAVLRETG 862


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 214/411 (52%), Gaps = 10/411 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ MI    SA +F  A  LL+R+ +  C  +   F SI    G+  +  +A+ +F+ M
Sbjct: 187 AYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM 246

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+   EP   +Y  ++ +L    +++ A+R    M    + P + ++N+++  LCK +  
Sbjct: 247 KK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK-ARK 304

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A+KIF     RGC PD  TY +LI+GL + G++ EA  LF++M     +   V YTS
Sbjct: 305 LEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTS 364

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI         E+  ++F+E+  +G +P++   ++ MD + K G   +   + + + S  
Sbjct: 365 LIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYG 424

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++ +YS L++GL K G+ +E   I   MK QG   DA  Y  ++  FC  GK  +A 
Sbjct: 425 FLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAY 484

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             L+EM    + P   T+         +V GL K D  + A+ ++   +++ I ++ + Y
Sbjct: 485 EILEEMKEKCVQPTVATYG-------AIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLY 537

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SSLI  F K G I ++  I++E++  G  P+  TW++++ AL    ++ +A
Sbjct: 538 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEA 588



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 202/398 (50%), Gaps = 13/398 (3%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V +L +A K + +A  IF+SA+     G   D  T+  +I  L    Q   A  L +++ 
Sbjct: 296 VDRLCKARK-LEEAYKIFESASQR---GCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 351

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
               +    ++ S+ R +    R  D  +VF ++   GC+P      T +  + +  +++
Sbjct: 352 DAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVE 411

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                +  +R  G  P V S ++LI  L K +G       IF  M  +G   D+  Y  +
Sbjct: 412 KGRMIFEDIRSYGFLPDVRSYSILIHGLTK-AGQARETSNIFHAMKQQGFALDARAYNAV 470

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++G C+ GK+++A E+ +EM+ K   PTV TY ++++GL +   ++EA  LFEE +SKG+
Sbjct: 471 VDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGI 530

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
           E NV  YSSL+DG  K G   +A  +L+ M+ K   PN+ T+++LL+ L K  ++ EA+ 
Sbjct: 531 ELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALV 590

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
               MK     P+   Y  +I+  C + KY +A  F  +M   G+ PN +T++       
Sbjct: 591 CFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYT------- 643

Query: 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414
           T++ GL K  +   A+ ++   +      D+ ++++LI
Sbjct: 644 TMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALI 681



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/490 (22%), Positives = 239/490 (48%), Gaps = 42/490 (8%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           ++   +L  +  ++ V++AL +F+    +       ++ST++++I  L    +   A  +
Sbjct: 221 VSFNSILTCLGKKRKVDEALSLFEVMKKDA----EPNSSTYNIIIDMLCLGGRVEEAYRI 276

Query: 73  LDRVNKEKCD---ITEDIFLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           LD +         +T +I +  +C+      +  +A ++F+   + GC P   +Y +++ 
Sbjct: 277 LDEMEHASLFPNLLTVNIMVDRLCKA----RKLEEAYKIFESASQRGCNPDCVTYCSLID 332

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            L ++ Q+  A+R +  M + G          LI+    + G  +   K+F+E+  RGC 
Sbjct: 333 GLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH-GRKEDGHKVFKELIRRGCK 391

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD     T ++ + + G++ + + +F+++ +    P V +Y+ LI+GL ++    E   +
Sbjct: 392 PDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNI 451

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F  M+ +G   +   Y++++DG CK G   +A E+L+ M  K  +P + TY  +++GL K
Sbjct: 452 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 511

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
             +L EA  + +  K +G++ +  LY  +I  F  +G+  EA   L+EM+  G+TPN  T
Sbjct: 512 IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 571

Query: 369 WSL----------------------------HIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           W+                             +   ++ ++ GLC+    N+AF  +  M+
Sbjct: 572 WNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQ 631

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            + +  + +TY+++I+   K G+I  +  + +    +G +PD  +++A++  + +  +  
Sbjct: 632 KQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAM 691

Query: 460 QAAELLLLEL 469
           +A +  + +L
Sbjct: 692 EAYQTTVYQL 701



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 208/420 (49%), Gaps = 8/420 (1%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FR   S ++++I  L  A +   A +LL ++ +   ++   +F ++ R   R  +  DA+
Sbjct: 41  FRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADAL 100

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            + D++K    EP    Y   +    +   + +A +F+  ++  G++P   S   +I  L
Sbjct: 101 ALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVL 160

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK +G +  A ++F +M      P +Y Y T+I G    G+  +A +L + +  + C P+
Sbjct: 161 CK-AGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPS 219

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV++ S++  L + + V+EA+ LFE M+ K  EPN  TY+ ++D LC GG   +A  +L 
Sbjct: 220 VVSFNSILTCLGKKRKVDEALSLFEVMK-KDAEPNSSTYNIIIDMLCLGGRVEEAYRILD 278

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M      PN++T + +++ LCK  KL+EA +I +    +G  PD   Y  +I      G
Sbjct: 279 EMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKG 338

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
           +  EA    ++M+  G   N + ++  IR  N  + G  K D ++ F+    +  R    
Sbjct: 339 QVDEAYRLFEKMLDAGHNANPVVYTSLIR--NFFIHGR-KEDGHKVFK---ELIRRGCKP 392

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D    ++ + C  K G++ K   I +++   G LPD  ++S ++  L    + R+ + + 
Sbjct: 393 DLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIF 452



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/470 (23%), Positives = 213/470 (45%), Gaps = 46/470 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG-YGRVHRPLD 103
           G+      F+ ++  L    Q   A  L+D V K  C   + +  ++C   +G+      
Sbjct: 75  GYEVGVHLFTTLVRALAREGQVADALALVDEV-KGSCLEPDIVLYNVCIDCFGKAGNVDM 133

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A + F ++K  G +P   SY +++ +L +  +L  A   +  M      PC  + N +I 
Sbjct: 134 ACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 193

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTP---------------------------------- 189
               ++G  + A+K+   +  RGC P                                  
Sbjct: 194 GY-GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEP 252

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +S TY  +I+ LC  G++ EA  +  EME  +  P ++T   +++ LC+++ +EEA ++F
Sbjct: 253 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 312

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           E    +G  P+  TY SL+DGL K G   +A  L + M+   H  N V Y++L+      
Sbjct: 313 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 372

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+ ++  ++   +  +G KPD  L    + C    G+ ++     +++   G  P+    
Sbjct: 373 GRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPD---- 428

Query: 370 SLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
              +R ++ ++ GL K    R    ++ +M+ +  ++D+  Y++++  FCK G +HK+  
Sbjct: 429 ---VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYE 485

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           I++E+      P   T+ A++  L    ++ +A  +L  E  +K +E  V
Sbjct: 486 ILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAY-MLFEEAKSKGIELNV 534



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 43/345 (12%)

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
           A LV   +L  A      MR +  +P  ++  VLI AL + +   + A ++ R+M   G 
Sbjct: 18  AALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAE-ARRPERALELLRQMQEVGY 76

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
               + + TL+  L R G++ +A  L  E++     P +V Y   I+   ++ +V+ A +
Sbjct: 77  EVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACK 136

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
            F E++++G++P+  +Y+S++  LCK G   +A EL   M ++R  P    Y+T++ G  
Sbjct: 137 FFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYG 196

Query: 308 KEGKLQEAVEILDRMKLQG----------------------------------LKPDAGL 333
             G+ ++A ++L+R++ +G                                   +P++  
Sbjct: 197 SAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSST 256

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAF 392
           Y  II   C  G+ +EA   LDEM    + PN LT        N +V  LCK      A+
Sbjct: 257 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTV-------NIMVDRLCKARKLEEAY 309

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           +++ S   R  + D +TY SLI    KKG + ++ R+ ++++  G
Sbjct: 310 KIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAG 354



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 123/285 (43%), Gaps = 16/285 (5%)

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           +PN+ C         L   L R  ++ +A      M      P    YT LI  L +++ 
Sbjct: 8   LPNQACA-------DLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARR 60

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
            E A+ L  +M+  G E  V  +++L+  L + G  + A+ L+  +      P+IV Y+ 
Sbjct: 61  PERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNV 120

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
            ++   K G +  A +    +K QGLKPD   Y  +I   C  G+  EA     +M    
Sbjct: 121 CIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAER 180

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
             P    +       NT++ G         A+++   +R R      ++++S++TC  KK
Sbjct: 181 SVPCAYAY-------NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKK 233

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             + ++  + + +  D   P+  T++ ++  L    ++ +A  +L
Sbjct: 234 RKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRIL 277



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 110/288 (38%), Gaps = 78/288 (27%)

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             L   L +++ +++A+     MR     P    Y+ L+  L +     +A+ELL+ M  
Sbjct: 14  ADLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQE 73

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
             +   +  ++TL+  L +EG++ +A+ ++D +K   L+PD  LY   I CF   G    
Sbjct: 74  VGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 133

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT 409
           A  F  E+   G+ P                                         D ++
Sbjct: 134 ACKFFHELKAQGLKP-----------------------------------------DDVS 152

Query: 410 YSSLITCFCKKGDIHKSA-----------------------------------RIVDELV 434
           Y+S+I   CK G + ++                                    ++++ L 
Sbjct: 153 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 212

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
             GC+P   ++++++T L  +RK+ +A  L L E+M K  E      N
Sbjct: 213 ERGCIPSVVSFNSILTCLGKKRKVDEA--LSLFEVMKKDAEPNSSTYN 258


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 222/444 (50%), Gaps = 23/444 (5%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICRGYGRVHRPLDAMRV 107
           T++ +I  L    Q R A  +LD +    C    +T +I L + C+G G       AM +
Sbjct: 169 TYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQ----AMEL 224

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            D M+  GC P   +Y  ++  +  E  +  A    R++   G +P   + N ++K LC 
Sbjct: 225 IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS 284

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
                DA  ++  EM    C P+  T+  +I  LCR G + +A +L ++M    C+  +V
Sbjct: 285 AERWGDAD-ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIV 343

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY ++INGLC+ ++V+ AM L  +M+S G +P++ TY++L+ GLC       A EL+  M
Sbjct: 344 TYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNM 403

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                 P+ VT++TL+  LC++G + +A+E+  +M  +G  P++  Y  IIS      K 
Sbjct: 404 TQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKL 463

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            +A    +EM   G  P++        I+  + + L   D    A Q    +++  IS  
Sbjct: 464 DQALELFNEMGHKGFNPDK--------IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPH 515

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           ++ Y++++   C+ G    +  I+  +V  GC+PD+ T+  ++  L     + +A ELL+
Sbjct: 516 TVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLI 575

Query: 467 L-----ELMNKCVEAEVDIQNQDV 485
                  L+N  +++E  + +Q++
Sbjct: 576 KLCSRDVLVNSLIKSEALLLDQNI 599



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 183/356 (51%), Gaps = 12/356 (3%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  GY R  R  DA RV   M     +P   +Y  ++  L E  Q++ A      M 
Sbjct: 138 YGALTDGYCRAGRLGDARRVVGGMP---VQPNAYTYNPLIHTLCERGQVRDALSVLDDML 194

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G  P V + N+L++A CK  G    A ++   M   GCTP++ TY  L++G+C  G +
Sbjct: 195 CRGCAPDVVTYNILLEATCKGRGYRQ-AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDV 253

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A EL + + +  C P+ V Y +++ GLC ++   +A  L  EM  +   PN  T++ +
Sbjct: 254 DDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVV 313

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +  LC+ G   QA++LL+ M       NIVTY+ ++NGLC++  +  A+ +L +MK  G 
Sbjct: 314 IYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGC 373

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KPD   Y  ++   C   ++ +A   +D M   G  P+ +T+       NT++  LC+  
Sbjct: 374 KPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTF-------NTLIGFLCQKG 426

Query: 388 PN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
               A +V+  M ++  + +S+TYS++I+   K   + ++  + +E+   G  PD+
Sbjct: 427 LMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDK 482



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 197/410 (48%), Gaps = 19/410 (4%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DIT 84
           V  AL + D        G   D  T+++++        +R A +L+D +  E C   ++T
Sbjct: 183 VRDALSVLDDM---LCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVT 239

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            ++ +    G G V    DA+ +   +   GC+P+  +Y TVL  L    +   A     
Sbjct: 240 YNVLMDGMCGEGDVD---DALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVT 296

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M      P  A+ NV+I +LC+  G +  A ++  +M   GCT +  TY  +INGLC  
Sbjct: 297 EMLRENCPPNEATFNVVIYSLCR-KGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQ 355

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
             +  A  L  +M++  C P +VTY +L+ GLC +    +A  L + M   G  P+  T+
Sbjct: 356 RNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTF 415

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           ++L+  LC+ G    A+E+ + M  K   PN +TYST+++GL K  KL +A+E+ + M  
Sbjct: 416 NTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGH 475

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +G  PD  +Y  +  C  D    +EA   + ++   GI+P       H  ++N ++ GLC
Sbjct: 476 KGFNPDK-IYQLLAECLNDDDTIEEAIQTVRKLQDSGISP-------HTVLYNAILLGLC 527

Query: 385 KTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           +      A  +   M +     D LTY  LI     +G ++++  ++ +L
Sbjct: 528 RNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 577



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 162/317 (51%), Gaps = 12/317 (3%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G    V +   L    C+ +G +  A ++   MP +   P++YTY  LI+ LC  G++ +
Sbjct: 130 GPAATVVAYGALTDGYCR-AGRLGDARRVVGGMPVQ---PNAYTYNPLIHTLCERGQVRD 185

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  +  +M  + C+P VVTY  L+   C+ +   +AM L + MR++G  PN  TY+ LMD
Sbjct: 186 ALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMD 245

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G+C  G    A+ELL+ + S   +P+ V Y+T+L GLC   +  +A E++  M  +   P
Sbjct: 246 GMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPP 305

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDP 388
           +   +  +I   C  G  Q+A   L++M   G T N +T+       N ++ GLC + + 
Sbjct: 306 NEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTY-------NAIINGLCEQRNV 358

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           + A  +   M++     D +TY++L+   C       +  ++D +  +GCLPD  T++ +
Sbjct: 359 DGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTL 418

Query: 449 MTALWDRRKMRQAAELL 465
           +  L  +  M  A E+ 
Sbjct: 419 IGFLCQKGLMVDAIEVF 435



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 171/335 (51%), Gaps = 13/335 (3%)

Query: 24  AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI 83
            E DV+ AL +  +  +   +G +     ++ ++  L SA ++  A++L+  + +E C  
Sbjct: 249 GEGDVDDALELLRNLPS---HGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPP 305

Query: 84  TEDIF----LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
            E  F     S+CR  G + +   A+++ +KM + GC     +Y  ++  L E+  +  A
Sbjct: 306 NEATFNVVIYSLCR-KGLLQQ---AIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGA 361

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
                 M+  G +P + + N L+K LC  +  +DA  ++   M   GC PD+ T+ TLI 
Sbjct: 362 MGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAE-ELMDNMTQNGCLPDNVTFNTLIG 420

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
            LC+ G + +A E+FK+M  K C+P  +TY+++I+GL ++  +++A+ LF EM  KG  P
Sbjct: 421 FLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNP 480

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +   Y  L + L       +A++ ++ +      P+ V Y+ +L GLC+ GK + A++I+
Sbjct: 481 DKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIM 539

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
             M   G  PD   Y  +I      G   EA   L
Sbjct: 540 AYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL 574



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 158/344 (45%), Gaps = 50/344 (14%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP--TVV 227
           G +DAA ++    P     PD+     L+  LCR G+  +A+ +       AC P  TVV
Sbjct: 85  GDLDAALRLVESSPR---PPDAALANRLVRDLCRRGRPDDAERVVG-----ACGPAATVV 136

Query: 228 TYTSLING--------------------------------LCQSKSVEEAMRLFEEMRSK 255
            Y +L +G                                LC+   V +A+ + ++M  +
Sbjct: 137 AYGALTDGYCRAGRLGDARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCR 196

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G  P+V TY+ L++  CKG    QAMEL+ +M ++   PN VTY+ L++G+C EG + +A
Sbjct: 197 GCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDA 256

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           +E+L  +   G KP    Y  ++   C   ++ +A   + EM+     PN  T+      
Sbjct: 257 LELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATF------ 310

Query: 376 HNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            N V+  LC+     +A Q+   M     + + +TY+++I   C++ ++  +  ++ ++ 
Sbjct: 311 -NVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMK 369

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
             GC PD  T++ ++  L    +   A EL+     N C+   V
Sbjct: 370 SYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNV 413



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 123/259 (47%), Gaps = 11/259 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +  +++V+ A+ +  S    Y  G + D  T++ ++  L SA Q+  AE+L
Sbjct: 343 VTYNAIINGLCEQRNVDGAMGLL-SKMKSY--GCKPDIVTYNTLLKGLCSAAQWVDAEEL 399

Query: 73  LDRVNKEKC---DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           +D + +  C   ++T +  +      G +   +DA+ VF +M + GC P   +Y T+++ 
Sbjct: 400 MDNMTQNGCLPDNVTFNTLIGFLCQKGLM---VDAIEVFKQMPDKGCTPNSITYSTIISG 456

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L +  +L  A   +  M   G  P    +  L+     +  T++ A +  R++ + G +P
Sbjct: 457 LAKATKLDQALELFNEMGHKGFNP--DKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISP 514

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
            +  Y  ++ GLCR GK   A ++   M +  C P  +TY  LI GL     + EA  L 
Sbjct: 515 HTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL 574

Query: 250 EEMRSKGVEPNVFTYSSLM 268
            ++ S+ V  N    S  +
Sbjct: 575 IKLCSRDVLVNSLIKSEAL 593



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 15/176 (8%)

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           L+ L   G L  A+ +++        PDA L  +++   C  G+  +A     E V+G  
Sbjct: 78  LSALVHRGDLDAALRLVESSPR---PPDAALANRLVRDLCRRGRPDDA-----ERVVGAC 129

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
            P     +  +  +  +  G C+    R       +    +  ++ TY+ LI   C++G 
Sbjct: 130 GP-----AATVVAYGALTDGYCRA--GRLGDARRVVGGMPVQPNAYTYNPLIHTLCERGQ 182

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +  +  ++D+++  GC PD  T++ ++ A    R  RQA EL+ L     C    V
Sbjct: 183 VRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNV 238


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 123/399 (30%), Positives = 204/399 (51%), Gaps = 9/399 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H+  T +++++     +Q   A   L ++ K   + +   F S+  G+ R  R  DA
Sbjct: 111 GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDA 170

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +FD+M   G +P    Y T++  L +  Q+  A      M + GI P V + N LI  
Sbjct: 171 LYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG 230

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC +SG    A ++   M  R   PD +T+  LI+   + G++ EA+E ++EM  ++  P
Sbjct: 231 LC-SSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDP 289

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VTY+ LI GLC    ++EA  +F  M SKG  P+V TYS L++G CK       M+L 
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  +    N VTY+ L+ G C+ GKL  A EI  RM   G+ P+   Y  ++   CD 
Sbjct: 350 CEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDN 409

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
           GK ++A   L +M   G+  + +T+       N +++G+CK  +   A+ +Y S+  + +
Sbjct: 410 GKIEKALVILADMQKNGMDADIVTY-------NIIIRGMCKAGEVADAWDIYCSLNCQGL 462

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
             D  TY++++    KKG   ++  +  ++  DG LP+E
Sbjct: 463 MPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPNE 501



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 194/383 (50%), Gaps = 14/383 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPK--SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           D++ +F  M +  C P P    +  +L+ + +  +  +    +  M+ +GI   + + N+
Sbjct: 64  DSLDLFFHMVQ--CRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+   C+ S  +  A     +M   G  P   T+G+L+NG CR  ++Y+A  +F +M   
Sbjct: 122 LLNCFCRCS-QLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGM 180

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P VV Y ++I+GLC+SK V+ A+ L   M   G+ P+V TY+SL+ GLC  G  S A
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             ++  M  +   P++ T++ L++   KEG++ EA E  + M  + L PD   Y  +I  
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
            C   +  EA      MV  G  P+ +T+S+       ++ G CK+       +++  M 
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSI-------LINGYCKSKKVEHGMKLFCEMS 353

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            R +  +++TY+ LI  +C+ G ++ +  I   +V  G  P+  T++ ++  L D  K+ 
Sbjct: 354 QRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413

Query: 460 QAAELLLLELMNKCVEAEVDIQN 482
           +A  ++L ++    ++A++   N
Sbjct: 414 KAL-VILADMQKNGMDADIVTYN 435



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 178/363 (49%), Gaps = 9/363 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+    KM + G EP+  ++ ++L      +++  A   +  M  +G +P V   N +I 
Sbjct: 135 ALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIID 194

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  +D A  +   M   G  PD  TY +LI+GLC  G+  +A  +   M  +   
Sbjct: 195 GLCK-SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIY 253

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V T+ +LI+   +   V EA   +EEM  + ++P++ TYS L+ GLC      +A E+
Sbjct: 254 PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEM 313

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M+SK   P++VTYS L+NG CK  K++  +++   M  +G+  +   Y  +I  +C 
Sbjct: 314 FGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCR 373

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
            GK   A      MV  G+ PN +T+       N ++ GLC      +A  +   M+   
Sbjct: 374 AGKLNVAEEIFRRMVFCGVHPNIITY-------NVLLHGLCDNGKIEKALVILADMQKNG 426

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  D +TY+ +I   CK G++  +  I   L   G +PD  T++ +M  L+ +   R+A 
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREAD 486

Query: 463 ELL 465
            L 
Sbjct: 487 ALF 489



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 141/295 (47%), Gaps = 8/295 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D +  +F  M      P    +  L++ + ++ K      L+++M+       + T   
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+N  C+   +  A+    +M   G EP++ T+ SL++G C+G     A+ +   M+   
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++PN+V Y+T+++GLCK  ++  A+++L+RM+  G+ PD   Y  +IS  C  G++ +A 
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTY 410
             +  M    I P+  T+       N ++    K    + A + Y  M  RS+  D +TY
Sbjct: 242 RMVSCMTKREIYPDVFTF-------NALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTY 294

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           S LI   C    + ++  +   +V  GC PD  T+S ++      +K+    +L 
Sbjct: 295 SLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 142/278 (51%), Gaps = 9/278 (3%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L NG+ R  K+ ++ +LF  M      P++  ++ L++ + + K  +  + L+E+M+  G
Sbjct: 53  LRNGI-RFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLG 111

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           +  N+ T + L++  C+    S A+  L  MI   H P+IVT+ +LLNG C+  ++ +A+
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDAL 171

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            + D+M   G KP+  +Y  II   C   +   A + L+ M   GI P+ +T+       
Sbjct: 172 YMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTY------- 224

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N+++ GLC +   + A ++   M  R I  D  T+++LI    K+G + ++    +E++ 
Sbjct: 225 NSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIR 284

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
               PD  T+S ++  L    ++ +A E+    +   C
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGC 322


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 194/390 (49%), Gaps = 30/390 (7%)

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M + D+M   GC+P   +Y  V+  L +     LAF     M +  ++P V   N +I  
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK    MD A  +F+EM  +G  P+  TY +LI+ LC  G+  +A  L  +M  +  +P
Sbjct: 61  LCKYK-HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 119

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V T+++LI+   +   + EA +L++EM  + ++P++ TYSSL++G C      +A ++ 
Sbjct: 120 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 179

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+SK   P++VTY+TL+ G CK  +++E +E+   M  +GL  +   Y  +I      
Sbjct: 180 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 239

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRIH 376
           G    A     EMV  G+ PN +T++                              I  +
Sbjct: 240 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 299

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N +++G+CK       + ++ ++  + +  D + Y+++I+ FC+KG   ++  +  E+  
Sbjct: 300 NIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 359

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           DG LP+ G ++ ++ A         +AEL+
Sbjct: 360 DGTLPNSGCYNTLIRARLRDGDREASAELI 389



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 199/419 (47%), Gaps = 43/419 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T+ ++++ L        A +LL+++ + K +    I+ +I  G  +     
Sbjct: 9   AKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMD 68

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M+  G  P   +Y ++++ L    +   A R    M E  I P V + + LI
Sbjct: 69  DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 128

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  K  G +  A K++ EM  R   P   TY +LING C   ++ EAK++F+ M +K C
Sbjct: 129 DAFVK-EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 187

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMR----------------------------------- 247
            P VVTY +LI G C+ K VEE M                                    
Sbjct: 188 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 247

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +F+EM S GV PN+ TY++L+DGLCK G   +AM + + +   +  P I TY+ ++ G+C
Sbjct: 248 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 307

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K GK+++  ++   + L+G+KPD   Y  +IS FC  G  +EA     EM   G  PN  
Sbjct: 308 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 367

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
            ++  IR        L   D   + ++   MR+   + D+ T   L+T     G + KS
Sbjct: 368 CYNTLIRAR------LRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLHDGRLDKS 419



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 182/346 (52%), Gaps = 4/346 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K ++ AL +F     +   G R +  T+S +IS L +  ++  A  LL  + + K +   
Sbjct: 65  KHMDDALNLFKEMETK---GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             F ++   + +  + ++A +++D+M +   +P+  +Y +++      ++L  A + +  
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 181

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M      P V + N LIK  CK    ++   ++FREM  RG   ++ TY  LI GL + G
Sbjct: 182 MVSKHCFPDVVTYNTLIKGFCKYK-RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 240

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
               A+E+FKEM +    P ++TY +L++GLC++  +E+AM +FE ++   +EP ++TY+
Sbjct: 241 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 300

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            +++G+CK G      +L   +  K  +P++V Y+T+++G C++G  +EA  +   MK  
Sbjct: 301 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 360

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           G  P++G Y  +I      G  + +A  + EM   G   +  T  L
Sbjct: 361 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 406



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 14/197 (7%)

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           M L+  M++K  +P++VTY  ++NGLCK G    A  +L++M+   L+P   +Y  II  
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYL 396
            C      +A N   EM   GI PN +T+S       +++  LC     +D +R      
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYS-------SLISCLCNYGRWSDASRLLS--- 110

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M  R I+ D  T+S+LI  F K+G + ++ ++ DE+V     P   T+S+++       
Sbjct: 111 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHD 170

Query: 457 KMRQAAELLLLELMNKC 473
           ++ +A ++    +   C
Sbjct: 171 RLDEAKQMFEFMVSKHC 187



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 1/181 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F +M   G  P   +Y T+L  L +  +L+ A   + +++   ++P + + N++I+
Sbjct: 245 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 304

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +CK +G ++  + +F  +  +G  PD   Y T+I+G CR G   EA  LFKEM+     
Sbjct: 305 GMCK-AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 363

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    Y +LI    +    E +  L +EMRS G   +  T   + + L  G      +++
Sbjct: 364 PNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDM 423

Query: 284 L 284
           L
Sbjct: 424 L 424


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 217/438 (49%), Gaps = 17/438 (3%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D N A+ +++ AT +   G R +N T S++++ L    +   AE++L +  +      E 
Sbjct: 331 DGNGAMELYEQATEK---GIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEV 387

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+ +   GY R+     A+   ++M+ FG  P   ++ +++    +  ++  A  + + M
Sbjct: 388 IYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKM 447

Query: 147 REIGIQPCVASLNVLIKA---LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
            E G+ P V + N LI     LC    T D  F+I  +M   G  P+  +YG+LIN LC+
Sbjct: 448 AEKGVTPSVETYNTLIDGYGKLC----TFDRCFQILEQMEEIGVKPNVVSYGSLINCLCK 503

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            GKI EA+ + ++M  +   P    Y  LI+G C    V++A+R F+EM    + P + T
Sbjct: 504 DGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVT 563

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y+ L+DGLCK G  ++A + L  + S  H P+++TY++L++G    G + + + + + MK
Sbjct: 564 YNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMK 623

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G+KP    Y  +IS  C     +      +EM+   + P+R+ ++  I  +  +    
Sbjct: 624 NLGIKPTVRTYHPLISG-CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEI---- 678

Query: 384 CKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
              +  +A+ ++  M ++ I  D +TY+SLI    ++G +     +V+ +      P   
Sbjct: 679 --GNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKAD 736

Query: 444 TWSAVMTALWDRRKMRQA 461
           T+  ++    D +    A
Sbjct: 737 TYDILVKGHCDLKDFSGA 754



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 183/358 (51%), Gaps = 34/358 (9%)

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y   +   V+   LK+   F   MR+ G++P V   NVLI  LC+     DA  K+F EM
Sbjct: 179 YAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAE-KMFDEM 237

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
            N        TY TLI+G C++G++  A ++ + M+ K+ +P ++T+ SL++GLC+ + +
Sbjct: 238 CNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKM 297

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           +EA  L +EM   G  P+ +TYS L DGL +    + AMEL +    K  R N  T S L
Sbjct: 298 KEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSIL 357

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           LNGLCK+GK+++A EIL +    GL  D  +Y   ++ +C IG   +A   ++ M   G+
Sbjct: 358 LNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGL 417

Query: 363 TPNRLTW----------------------------SLHIRIHNTVVQG---LCKTDPNRA 391
            PN +T+                            +  +  +NT++ G   LC  D  R 
Sbjct: 418 RPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFD--RC 475

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           FQ+   M    +  + ++Y SLI C CK G I ++  ++ +++  G LP+   ++ ++
Sbjct: 476 FQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLI 533



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 201/444 (45%), Gaps = 44/444 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +GFR D   ++  I   V     +   + LD + K        I+  +  G  R  R  D
Sbjct: 170 SGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRD 229

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++FD+M       +  +Y T++    +  +L  AF+    M+E  + P + + N L+ 
Sbjct: 230 AEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLS 289

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTY----------------------------- 194
            LCK    M  A  + +EM   G  PD YTY                             
Sbjct: 290 GLCKMR-KMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIR 348

Query: 195 ------GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
                   L+NGLC+ GK+ +A+E+ K+          V Y + +NG C+   + +A+  
Sbjct: 349 INNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILT 408

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            E M S G+ PN  T++SL+D  C      +A E ++ M  K   P++ TY+TL++G  K
Sbjct: 409 IERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGK 468

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
                   +IL++M+  G+KP+   YG +I+C C  GK  EA   L +M+  G+ PN   
Sbjct: 469 LCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPN--- 525

Query: 369 WSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                +++N ++ G C     + A + +  M    IS   +TY+ LI   CKKG + ++ 
Sbjct: 526 ----AQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAE 581

Query: 428 RIVDELVLDGCLPDEGTWSAVMTA 451
             + ++   G  PD  T++++++ 
Sbjct: 582 DFLTQITSSGHSPDVITYNSLISG 605



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 201/401 (50%), Gaps = 9/401 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I       +   A  + +R+ ++        F S+  G  ++ +  +A  +  +M
Sbjct: 248 TYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEM 307

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y  +   L+  +    A   Y    E GI+    + ++L+  LCK  G 
Sbjct: 308 EVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCK-QGK 366

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A +I ++    G   D   Y T +NG CR+G + +A    + ME+    P  +T+ S
Sbjct: 367 VEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNS 426

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+  C  K +++A    ++M  KGV P+V TY++L+DG  K     +  ++L+ M    
Sbjct: 427 LIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIG 486

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +PN+V+Y +L+N LCK+GK+ EA  +L  M  +G+ P+A +Y  +I   C +GK ++A 
Sbjct: 487 VKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDAL 546

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTY 410
            F DEM+   I+P  +T+       N ++ GLCK       + +L+ + +   S D +TY
Sbjct: 547 RFFDEMMRSEISPTLVTY-------NVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITY 599

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           +SLI+ +   G++ K   + + +   G  P   T+  +++ 
Sbjct: 600 NSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG 640



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 131/260 (50%), Gaps = 10/260 (3%)

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           +LF E+E          Y   I    + ++++  M   + MR +GV PNVF Y+ L+ GL
Sbjct: 162 DLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGL 221

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
           C+      A ++   M +     +IVTY+TL++G CK G+L  A ++ +RMK + + P+ 
Sbjct: 222 CREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNI 281

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNR 390
             +  ++S  C + K +EA + L EM + G  P+  T+S+       +  GL +  D N 
Sbjct: 282 ITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSI-------LFDGLLRCDDGNG 334

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A ++Y     + I +++ T S L+   CK+G + K+  I+ +   +G + DE  ++  + 
Sbjct: 335 AMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVN 394

Query: 451 ALWDRRKMRQAAELLLLELM 470
                  M +A  +L +E M
Sbjct: 395 GYCRIGDMNKA--ILTIERM 412



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 159/406 (39%), Gaps = 110/406 (27%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+NKA++  +   +    G R ++ TF+ +I K     +   AE+ + ++ ++    + +
Sbjct: 401 DMNKAILTIERMES---FGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVE 457

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL---------- 136
            + ++  GYG++       ++ ++M+E G +P   SY +++  L ++ ++          
Sbjct: 458 TYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDM 517

Query: 137 -------------------------KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
                                    K A RF+  M    I P + + NVLI  LCK  G 
Sbjct: 518 ICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCK-KGK 576

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A     ++ + G +PD  TY +LI+G    G + +   L++ M+     PTV TY  
Sbjct: 577 LTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHP 636

Query: 232 LINGLCQSKSVEEAMRLFEEMRS-----------------------------------KG 256
           LI+G C  + +E   +L+ EM                                     +G
Sbjct: 637 LISG-CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQG 695

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC--------- 307
           + P+  TY+SL+ G  + G  S   +L+  M +K   P   TY  L+ G C         
Sbjct: 696 IHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAY 755

Query: 308 --------------------------KEGKLQEAVEILDRMKLQGL 327
                                     +EG+LQE   I   M ++G+
Sbjct: 756 VWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEMNVKGI 801


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 210/423 (49%), Gaps = 10/423 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ D  TF+ ++  L   N+   A  L++R+  + C      + ++  G  +   P  A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + +KM++   E     Y T++  L +   +  AF  +  M   GI+P V + N LI  
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKACS 223
           LC N G    A ++  +M  +   PD   +  LI+   + GK+ EA++L+ EM ++K C 
Sbjct: 295 LC-NYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF 353

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VV Y +LI G C+ K VEE M +F EM  +G+  N  TY++L+ G  +      A  +
Sbjct: 354 PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M+S    P+I+TY+ LL+GLC  G ++ A+ + + M+ + +K D   Y  +I   C 
Sbjct: 414 FKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCK 473

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
            GK ++  +    + L G+ PN +T++       T++ G C+      A  +++ M+   
Sbjct: 474 AGKVEDGWDLFCSLSLKGVKPNVVTYT-------TMMSGFCRKGLKEEADALFVEMKEDG 526

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              +S TY++LI    + GD   SA ++ E+   G   D  T+  V   L D R  +   
Sbjct: 527 PLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLHDGRLDKSFL 586

Query: 463 ELL 465
           ++L
Sbjct: 587 DML 589



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 217/452 (48%), Gaps = 11/452 (2%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE 79
           +L+ A   +NK  ++          G  H+  T+S+ I+     +Q   A  +L ++ K 
Sbjct: 80  KLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKL 139

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
               +     S+  G+   +R  +A+ + D+M E G +P   ++ T++  L + N+   A
Sbjct: 140 GYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEA 199

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
                 M   G QP + +   +I  LCK  G  D A  +  +M       D   Y T+I+
Sbjct: 200 VALVERMVVKGCQPDLVTYGAVINGLCKR-GEPDLALNLLNKMEKGKIEADVVIYNTIID 258

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           GLC+   + +A +LF +METK   P V TY  LI+ LC      +A RL  +M  K + P
Sbjct: 259 GLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINP 318

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEI 318
           ++  +++L+D   K G   +A +L   M+  +H  P++V Y+TL+ G CK  +++E +E+
Sbjct: 319 DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEV 378

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              M  +GL  +   Y  +I  F        A     +MV  G+ P+ +T+       N 
Sbjct: 379 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTY-------NI 431

Query: 379 VVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ GLC   +   A  V+  M+ R + +D +TY+++I   CK G +     +   L L G
Sbjct: 432 LLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKG 491

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
             P+  T++ +M+    R+ +++ A+ L +E+
Sbjct: 492 VKPNVVTYTTMMSGFC-RKGLKEEADALFVEM 522



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 196/400 (49%), Gaps = 33/400 (8%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M +    P+   +  +L+ + + N+  L       M+ +GI   + + ++ I
Sbjct: 58  DAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFI 117

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  I  +M   G  P   T  +L+NG C   +I EA  L  +M     
Sbjct: 118 NYFCRRS-QLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 176

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VT+T+L++GL Q     EA+ L E M  KG +P++ TY ++++GLCK G    A+ 
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 236

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M   +   ++V Y+T+++GLCK   + +A ++ ++M+ +G+KPD   Y  +ISC C
Sbjct: 237 LLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLC 296

Query: 343 DIGKYQEAANFLDEMVLGGITP-------------------------NRLTWSLH----I 373
           + G++ +A+  L +M+   I P                         + +  S H    +
Sbjct: 297 NYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDV 356

Query: 374 RIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
             +NT+++G CK        +V+  M  R +  +++TY++LI  F +  D   +  +  +
Sbjct: 357 VAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 416

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           +V DG  PD  T++ ++  L +   +  A  L++ E M K
Sbjct: 417 MVSDGVHPDIMTYNILLDGLCNNGNVETA--LVVFEYMQK 454



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 155/294 (52%), Gaps = 8/294 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F +M      P    +  L++ + ++ K      L ++M+    S  + TY+ 
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            IN  C+   +  A+ +  +M   G  P++ T +SL++G C G   S+A+ L+  M+   
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P+ VT++TL++GL +  K  EAV +++RM ++G +PD   YG +I+  C  G+   A 
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           N L++M  G I  +       + I+NT++ GLCK    + AF ++  M  + I  D  TY
Sbjct: 236 NLLNKMEKGKIEAD-------VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           + LI+C C  G    ++R++ +++     PD   ++A++ A     K+ +A +L
Sbjct: 289 NPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKL 342



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/189 (18%), Positives = 82/189 (43%), Gaps = 4/189 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++      +D + A ++F    ++   G   D  T+++++  L +      A  +
Sbjct: 392 VTYTTLIHGFFQARDCDNAQMVFKQMVSD---GVHPDIMTYNILLDGLCNNGNVETALVV 448

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            + + K    +    + ++     +  +  D   +F  +   G +P   +Y T+++    
Sbjct: 449 FEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 508

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +   + A   +  M+E G  P   + N LI+A  ++ G   A+ ++ +EM + G   D+ 
Sbjct: 509 KGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRD-GDEAASAELIKEMRSCGFAGDAS 567

Query: 193 TYGTLINGL 201
           T+G + N L
Sbjct: 568 TFGLVTNML 576


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 114/379 (30%), Positives = 193/379 (50%), Gaps = 11/379 (2%)

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+F   ++  G+ +V++   A +V ++MK  G  P   +Y  ++  L    +L LA    
Sbjct: 146 DVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVL 205

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             +      P V +  +LI+A     G ++ A K+  EM  RG  PD YTY  +I G+C+
Sbjct: 206 DQLLLDNCMPTVITYTILIEATIVEGG-INEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 264

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G +  A EL   + +K C P V++Y  L+         +E  +L  EM S+G EPN  T
Sbjct: 265 EGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 324

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           YS L+  LC+ G   +A+ +L++MI K   P+  +Y  L++ LCKEG+L  A+ I+D M 
Sbjct: 325 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 384

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G  PD   Y  I++  C  G   +A    +++   G  PN       +  +NT++  L
Sbjct: 385 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPN-------VSSYNTMISAL 437

Query: 384 CK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
               D +RA  +  +M ++ I  D +TY+SLI+C C+ G + ++  ++D++   G  P  
Sbjct: 438 WSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTV 497

Query: 443 GTWSAVMTALWDRRKMRQA 461
            +++ V+  L   R++  A
Sbjct: 498 ISYNIVLLGLCKVRRIDDA 516



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 188/376 (50%), Gaps = 15/376 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVH 99
           A GF  D  T+++MI  L +  +   A  +LD++  + C    IT  I +      G ++
Sbjct: 175 ARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGIN 234

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
              +AM++ ++M   G  P   +Y  ++  + +E  ++ A      +   G +P V S N
Sbjct: 235 ---EAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYN 291

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           +L++A   N G  D   K+  EM +RGC P+  TY  LI+ LCR G+I EA  + K M  
Sbjct: 292 ILLRAFL-NQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE 350

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K  +P   +Y  LI+ LC+   ++ A+ + + M S G  P++  Y++++  LCK G ++Q
Sbjct: 351 KELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQ 410

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A+E+   +      PN+ +Y+T+++ L   G    A+ ++  M  +G+ PD   Y  +IS
Sbjct: 411 ALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLIS 470

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
           C C  G  +EA   LD+M   G  P  +++       N V+ GLCK    + A  ++  M
Sbjct: 471 CLCRDGLVEEAIGLLDDMEQSGFRPTVISY-------NIVLLGLCKVRRIDDAIGMFAEM 523

Query: 399 RNRSISVDSLTYSSLI 414
             +    +  TY  LI
Sbjct: 524 IEKGCRPNETTYILLI 539



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 150/278 (53%), Gaps = 8/278 (2%)

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD + Y  +I+G C++ +I  A ++   M+ +   P +VTY  +I  LC  + +  A+ +
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            +++      P V TY+ L++     G  ++AM+LL+ M+++   P++ TY+ ++ G+CK
Sbjct: 205 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 264

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EG ++ A E++  +  +G +PD   Y  ++  F + GK+ E    + EM   G  PN++T
Sbjct: 265 EGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 324

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +S+       ++  LC+    + A  V   M  + ++ D+ +Y  LI+  CK+G +  + 
Sbjct: 325 YSI-------LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAI 377

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            I+D ++ +GCLPD   ++ ++ AL       QA E+ 
Sbjct: 378 GIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIF 415



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 152/302 (50%), Gaps = 12/302 (3%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-- 82
           E  V +A  +  S T++   G   D  ++++++   ++  ++   E L+  +    C+  
Sbjct: 265 EGMVERAAELITSLTSK---GCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPN 321

Query: 83  -ITEDIFLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
            +T  I +S +CR +GR+   +  ++V   M E    P   SY  +++ L +E +L LA 
Sbjct: 322 KVTYSILISSLCR-FGRIDEAISVLKV---MIEKELTPDTYSYDPLISALCKEGRLDLAI 377

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
               +M   G  P + + N ++ ALCKN G  + A +IF ++   GC P+  +Y T+I+ 
Sbjct: 378 GIMDYMISNGCLPDIVNYNTILAALCKN-GNANQALEIFNKLRGMGCPPNVSSYNTMISA 436

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           L   G    A  +   M +K   P  +TY SLI+ LC+   VEEA+ L ++M   G  P 
Sbjct: 437 LWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPT 496

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           V +Y+ ++ GLCK      A+ +   MI K  RPN  TY  L+ G+   G   EA+E+ +
Sbjct: 497 VISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELAN 556

Query: 321 RM 322
            +
Sbjct: 557 SL 558



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 141/270 (52%), Gaps = 9/270 (3%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L+N  C+ GK  E+    + +  K  +P V+  T LI G    K++E+A R+ E + S  
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH- 142

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
            EP+VF Y++++ G CK      A ++L  M ++   P+IVTY+ ++  LC   KL  A+
Sbjct: 143 TEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 202

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            +LD++ L    P    Y  +I      G   EA   L+EM+  G+ P+  T+       
Sbjct: 203 TVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTY------- 255

Query: 377 NTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N +++G+CK     RA ++  S+ ++    D ++Y+ L+  F  +G   +  ++V E+  
Sbjct: 256 NAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFS 315

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            GC P++ T+S ++++L    ++ +A  +L
Sbjct: 316 RGCEPNKVTYSILISSLCRFGRIDEAISVL 345



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 156/324 (48%), Gaps = 11/324 (3%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+   CK +G  + +      + N+G TPD      LI G      I +A  + + +E+ 
Sbjct: 84  LLNRSCK-AGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH 142

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P V  Y ++I+G C+   +E A ++   M+++G  P++ TY+ ++  LC       A
Sbjct: 143 T-EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLA 201

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + +L  ++     P ++TY+ L+     EG + EA+++L+ M  +GL PD   Y  II  
Sbjct: 202 LTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRG 261

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN 400
            C  G  + AA  +  +   G  P+ +++++ +R    + QG  K D     ++   M +
Sbjct: 262 MCKEGMVERAAELITSLTSKGCEPDVISYNILLRAF--LNQG--KWDEGE--KLVAEMFS 315

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R    + +TYS LI+  C+ G I ++  ++  ++     PD  ++  +++AL    ++  
Sbjct: 316 RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDL 375

Query: 461 AAELLLLELMNKCVEAEVDIQNQD 484
           A  ++   + N C+    DI N +
Sbjct: 376 AIGIMDYMISNGCLP---DIVNYN 396



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 133/255 (52%), Gaps = 13/255 (5%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGY 95
           ++ G   +  T+S++IS L    +   A  +L +V  EK ++T D +       ++C+  
Sbjct: 314 FSRGCEPNKVTYSILISSLCRFGRIDEAISVL-KVMIEK-ELTPDTYSYDPLISALCK-E 370

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           GR+     A+ + D M   GC P   +Y T+LA L +      A   +  +R +G  P V
Sbjct: 371 GRLDL---AIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNV 427

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           +S N +I AL  + G    A  +   M ++G  PD  TY +LI+ LCR G + EA  L  
Sbjct: 428 SSYNTMISALW-SCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLD 486

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           +ME     PTV++Y  ++ GLC+ + +++A+ +F EM  KG  PN  TY  L++G+   G
Sbjct: 487 DMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAG 546

Query: 276 CSSQAMELLQMMISK 290
             ++AMEL   + S+
Sbjct: 547 WRTEAMELANSLFSR 561



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 9/213 (4%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DITE--DIFLSICRGYGRVHRPLDA 104
           D  ++  +IS L    +   A  ++D +    C  DI     I  ++C+  G  ++   A
Sbjct: 356 DTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKN-GNANQ---A 411

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F+K++  GC P   SY T+++ L        A      M   GI P   + N LI  
Sbjct: 412 LEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISC 471

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC++ G ++ A  +  +M   G  P   +Y  ++ GLC++ +I +A  +F EM  K C P
Sbjct: 472 LCRD-GLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRP 530

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
              TY  LI G+  +    EAM L   + S+ V
Sbjct: 531 NETTYILLIEGIGFAGWRTEAMELANSLFSRDV 563



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 28/158 (17%)

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--------------------- 374
           K+++  C  GK+ E+  FL+ +V  G TP+ +  +  I+                     
Sbjct: 83  KLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH 142

Query: 375 ------IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                  +N V+ G CK +    A QV   M+ R    D +TY+ +I   C +  +  + 
Sbjct: 143 TEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 202

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++D+L+LD C+P   T++ ++ A      + +A +LL
Sbjct: 203 TVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLL 240


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 230/484 (47%), Gaps = 46/484 (9%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V++++  + D   AL  F  A  +   G+ H+   +  MI  L  A  F   + LL ++ 
Sbjct: 186 VVKVLNLQTDAQNALRFFQWADKQ--EGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQ 243

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEP--TPKSYITVLAILVEENQ 135
            +  +IT  +  S    YGR  R  +++  F+ MKE G EP     +Y +VL  LV+  +
Sbjct: 244 TQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKK 303

Query: 136 LKLAFRFYRHMREIGIQ-----------------------------------PCVASLNV 160
           L +A   +  M   G+                                    P V +  +
Sbjct: 304 LDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTI 363

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I ALCK    ++ A+ + ++M   GC P+ YTY  LI GLC + +  EA EL   ME  
Sbjct: 364 VISALCKRK-MIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQG 422

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P + TYT L +GLC+ + ++ A  +F E  ++G++PN  TY++L++G C+G    +A
Sbjct: 423 GVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEA 482

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           M++L+ M      P+ VTY+TL+ GL +  +L +A+ + D M+ +G   +      +   
Sbjct: 483 MDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARG 542

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN 400
              +G +++A+ F   M   G   +   + L I   +T        +   A  +   M N
Sbjct: 543 LARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTA------GEMEEAQALLYEMIN 596

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +  S +  TY+++I  FC++G +  +  +++ ++ +G  PD G+++ ++    ++ + + 
Sbjct: 597 KGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQD 656

Query: 461 AAEL 464
           A +L
Sbjct: 657 ADQL 660



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 165/355 (46%), Gaps = 4/355 (1%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
             +T   ++Q    ++ +  A+ + D       N +  D  T++++IS L        A 
Sbjct: 322 NNLTYTSMIQCFFLKEKMEDAMKLLDDMIQ---NNYAPDVVTYTIVISALCKRKMIEQAY 378

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            +L ++ +  C+     + ++ +G   V RP +A+ +   M++ G  P   +Y  +   L
Sbjct: 379 GVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGL 438

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
            +  +L  A   +      G++P   + N L+   C+ S  ++A   I +EM    CTPD
Sbjct: 439 CKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEA-MDILKEMHQNDCTPD 497

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY TLI GL +  ++ +A  +  EME K       T   L  GL +  + ++A   + 
Sbjct: 498 HVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYR 557

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            M+ +G   +   Y   +  L   G   +A  LL  MI+K + PN+ TY+T++ G C++G
Sbjct: 558 RMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQG 617

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           +L +A  +L+ M   G+ PD G Y  +I  F + G+ Q+A       +  G+  N
Sbjct: 618 RLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGVVLN 672



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G   ++  Y T+I+ L R     E + L ++M+T+    T     S +    +S   +E+
Sbjct: 211 GYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKES 270

Query: 246 MRLFEEMRSKGVEPNVF--TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           +  F  M+  G EP +    Y+S++  L K      A  L   MI+     N +TY++++
Sbjct: 271 LEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMI 330

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
                + K+++A+++LD M      PD   Y  +IS  C     ++A   L +M   G  
Sbjct: 331 QCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCE 390

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           PN  T+       N ++QGLC    P  A ++   M    +  +  TY+ L    CK   
Sbjct: 391 PNIYTY-------NALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRR 443

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           + ++  + +E +  G  P+  T++ ++       ++ +A ++L     N C    V
Sbjct: 444 LDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHV 499



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 34/262 (12%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++++   L    +   A+++ +             + ++  GY R  R ++AM +  +M
Sbjct: 430 TYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEM 489

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---- 167
            +  C P   +Y T++  LV+ NQL  A R +  M   G      +LN+L + L +    
Sbjct: 490 HQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNH 549

Query: 168 ------------------------------NSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                                          +G M+ A  +  EM N+G +P+  TY T+
Sbjct: 550 KDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTM 609

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I G CR G++ +A  +   M      P   +Y  LI         ++A +L+     +GV
Sbjct: 610 IKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGV 669

Query: 258 EPNVFTYSSLMDGLCKGGCSSQ 279
             N        D L +G   SQ
Sbjct: 670 VLNPKPVIQEPDELPEGLVRSQ 691


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 224/458 (48%), Gaps = 47/458 (10%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRP 101
           NG + +   ++ +++      +   +  +L+R+ ++   I  D+F   S+  G+ +  R 
Sbjct: 454 NGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQ--GILPDVFCYNSLIIGFCKAKRM 511

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A     +M E    P   +Y   +    +  ++++A R++  M   G+ P V     L
Sbjct: 512 EEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTAL 571

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I+  CK  G +  AF +FR + +R    D  TY  LI+GL R GK++EA  +F E++ K 
Sbjct: 572 IEGHCK-EGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKG 630

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P   TY SLI+G C+  +V++A +L EEM  KG+ P++ TY+ L+DGLCK G   +A 
Sbjct: 631 LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAK 690

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI---- 337
            L   +  +   PN VTY+ +++G CK      A ++L+ M L+G+ PDA +Y  I    
Sbjct: 691 NLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFC 750

Query: 338 ------------------------------ISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
                                         I  +C  GK QEA + L+EM+     PN +
Sbjct: 751 CKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 810

Query: 368 TWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T++  I  HN      CK      A +++L M+ R++   + TY+SL+  +   G++ + 
Sbjct: 811 TYTSLID-HN------CKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEV 863

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           + + +E+V  G  PD+ T+  ++ A      + +A +L
Sbjct: 864 SALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL 901



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 185/373 (49%), Gaps = 30/373 (8%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           +VFD M      P   +Y  +++   +   +K A R    M E G  P + + NV+I  L
Sbjct: 201 KVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGL 260

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C+ +  +D A ++ R M ++G  PD YTY  LING C   +  EAK +  EM      P 
Sbjct: 261 CR-ARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPE 319

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
            +TY +LI+G  +   +E+A R+ +EM + G+E N+  +++L++G+CK G   +A+E++Q
Sbjct: 320 PITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQ 379

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+ K   P+  TYS L+ G C+   +  A E+LD MK + L P    Y  II+  C  G
Sbjct: 380 EMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 439

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIH----------------------------N 377
             Q     L EMV+ G+ PN + ++  +  H                            N
Sbjct: 440 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 499

Query: 378 TVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           +++ G CK       + YL  M  R +  ++ TY + I  + K G++  + R  +E++  
Sbjct: 500 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSC 559

Query: 437 GCLPDEGTWSAVM 449
           G LP+ G ++A++
Sbjct: 560 GVLPNVGIYTALI 572



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 216/446 (48%), Gaps = 30/446 (6%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ MIS        + A+ +L  + ++ C      +  I  G  R     +A+ + 
Sbjct: 214 DVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELK 273

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M + G  P   +Y  ++     E + + A      M ++G++P   + N LI    + 
Sbjct: 274 RSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMR- 332

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G ++ AF+I  EM   G   +   + TL+NG+C+ GK+ +A E+ +EM  K   P   T
Sbjct: 333 QGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQT 392

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y+ LI G C+ +++  A  L +EM+ + + P V TYS +++GLC+ G       +L+ M+
Sbjct: 393 YSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMV 452

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
               +PN V Y+TL+    KEG+++E+  IL+RM+ QG+ PD   Y  +I  FC   + +
Sbjct: 453 MNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRME 512

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVV 380
           EA  +L EM+   + PN  T+   I                             I+  ++
Sbjct: 513 EARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 572

Query: 381 QGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
           +G CK  +   AF V+  + +R +  D  TYS LI    + G +H++  I  EL   G L
Sbjct: 573 EGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLL 632

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           P+  T++++++    +  + +A++LL
Sbjct: 633 PNAFTYNSLISGSCKQGNVDKASQLL 658



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 212/406 (52%), Gaps = 26/406 (6%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           + D    S +   L ++N + PA DL+  + +   D    +  SI + Y   +   +++ 
Sbjct: 89  QQDLDVLSALAVNLCNSNWYGPASDLIKCIIRNS-DSPLAVLGSIVKCYRSCNGSPNSV- 146

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +FD + +        SY   +  LVE      A   +   +    +P + S N L+  L 
Sbjct: 147 IFDMLMD--------SY-RKMGFLVE------AVNVFLGPKNFEFRPSLLSCNSLLGDLL 191

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +  ++  +K+F  M      PD YTY  +I+  C++G + +AK +  EM  K CSP +
Sbjct: 192 KGN-KVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNL 250

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VTY  +I GLC+++ ++EA+ L   M  KG+ P+++TY  L++G C    S +A  +L  
Sbjct: 251 VTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLE 310

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           MI    +P  +TY+ L++G  ++G +++A  I D M   G++ +  ++  +++  C  GK
Sbjct: 311 MIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGK 370

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISV 405
            ++A   + EM+  G+ P+  T+SL       +++G C+  +  RAF++   M+ R ++ 
Sbjct: 371 MEKALEIMQEMMEKGVEPDSQTYSL-------LIEGHCRGQNMARAFELLDEMKKRKLAP 423

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             LTYS +I   C+ G++  +  I+ E+V++G  P+   ++ +MTA
Sbjct: 424 TVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 469



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 212/488 (43%), Gaps = 117/488 (23%)

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           T DI ++   G+    R  +A  +  +M + G +P P +Y  ++   + +  ++ AFR  
Sbjct: 287 TYDILIN---GFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIK 343

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M   GI+  +   N L+  +CK +G M+ A +I +EM  +G  PDS TY  LI G CR
Sbjct: 344 DEMVACGIEANLIIWNTLLNGVCK-AGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCR 402

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS---------------------- 241
              +  A EL  EM+ +  +PTV+TY+ +INGLC+  +                      
Sbjct: 403 GQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVV 462

Query: 242 -------------VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
                        VEE+  + E MR +G+ P+VF Y+SL+ G CK     +A   L  M+
Sbjct: 463 YTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEML 522

Query: 289 SKRHRPNIVTY-----------------------------------STLLNGLCKEG--- 310
            +R RPN  TY                                   + L+ G CKEG   
Sbjct: 523 ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVT 582

Query: 311 --------------------------------KLQEAVEILDRMKLQGLKPDAGLYGKII 338
                                           K+ EA  I   ++ +GL P+A  Y  +I
Sbjct: 583 EAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 642

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
           S  C  G   +A+  L+EM + GI P+ +T+       N ++ GLCK  +  RA  ++  
Sbjct: 643 SGSCKQGNVDKASQLLEEMCIKGINPDIVTY-------NILIDGLCKAGEIERAKNLFDD 695

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +  R ++ + +TY++++  +CK  +   + ++++E++L G  PD   ++ ++       K
Sbjct: 696 IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEK 755

Query: 458 MRQAAELL 465
             +A +L 
Sbjct: 756 FEKALDLF 763



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 197/415 (47%), Gaps = 45/415 (10%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+ ++  G+ +     +A  VF  +         ++Y  ++  L    ++  AF  +  +
Sbjct: 567 IYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSEL 626

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +E G+ P   + N LI   CK  G +D A ++  EM  +G  PD  TY  LI+GLC+ G+
Sbjct: 627 QEKGLLPNAFTYNSLISGSCK-QGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGE 685

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS- 265
           I  AK LF ++E +  +P  VTY ++++G C+SK+   A +L EEM  +GV P+ F Y+ 
Sbjct: 686 IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNV 745

Query: 266 ---------------------------------SLMDGLCKGGCSSQAMELLQMMISKRH 292
                                            +L++G CK G   +A  LL+ MI K+ 
Sbjct: 746 ILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQF 805

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            PN VTY++L++  CK G + EA  +   M+ + + P A  Y  ++  + +IG   E + 
Sbjct: 806 IPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSA 865

Query: 353 FLDEMVLGGITPNRLTWSLHIRIH--NTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTY 410
             +EMV  GI P+++T+ + I  +     V   CK       +  + ++   +SV +  Y
Sbjct: 866 LFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACK------LKDEILVKGMPMSVAA--Y 917

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +LI   CKK +  +  ++++E+   G      T S +         M +AAE+L
Sbjct: 918 DALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVL 972



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 152/321 (47%), Gaps = 2/321 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++++I  L  A +   A++L D +           + ++  GY +   P  A
Sbjct: 665 GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA 724

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++ ++M   G  P    Y  +L    +E + + A   ++ M E G    V S N LI+ 
Sbjct: 725 FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEG 783

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK SG +  A  +  EM  +   P+  TY +LI+  C+ G + EAK L+ EM+ +   P
Sbjct: 784 YCK-SGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMP 842

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T  TYTSL++G     ++ E   LFEEM +KG+EP+  TY  ++D  C+ G   +A +L 
Sbjct: 843 TAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLK 902

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             ++ K    ++  Y  L+  LCK+ +  E +++L+ +   G +        I   F   
Sbjct: 903 DEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIA 962

Query: 345 GKYQEAANFLDEMVLGGITPN 365
           G   EAA  L  MV  G   N
Sbjct: 963 GNMDEAAEVLRSMVKFGWVSN 983


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 175/327 (53%), Gaps = 9/327 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 152

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 153 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 212

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 213 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 272

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M ++ LKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 273 LCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 332

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            + ++        ++ GLC+   +  A ++   M N  +  DS TY+ +I  FCKKGD+ 
Sbjct: 333 EVAYT-------ALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVW 385

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTA 451
           K ++++ E+  DG +P   T++ +M  
Sbjct: 386 KGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 158/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 201

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 202 GLCKES-KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 260

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  K ++P+  TY++L+DG CK G    A E 
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEH 320

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPD+  Y  II+ FC 
Sbjct: 321 RKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCK 380

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 381 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 408



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 175/345 (50%), Gaps = 17/345 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMRE----IGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           ++   +E   L+ A   YR  RE    +    C   L  L+K            +  + E
Sbjct: 59  LITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKL-----KYFKLVWGFYEE 113

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           +   G     Y +  L++  C+ G I  A+ +F  +      P+VV+Y +L+NG  +   
Sbjct: 114 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 173

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           ++E  RL   M + GV+P+V+TYS L++GLCK      A EL   M+ K   PN VT++T
Sbjct: 174 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 233

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L++G CK G++  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +DEM +  
Sbjct: 234 LIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKE 293

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           + P+++T++       T++ G CK  D + AF+    M   +I +D + Y++LI+  C++
Sbjct: 294 LKPDKITYT-------TLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQE 346

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G    + +++ E++  G  PD  T++ ++     +  + + ++LL
Sbjct: 347 GRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLL 391



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 244

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++  +PD  TY TLI GLC+ G + +A  L  EM  K   P  +TYT+L
Sbjct: 245 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTL 304

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M++   
Sbjct: 305 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGL 364

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 365 KPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 411



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 135/284 (47%), Gaps = 9/284 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E        D Y +  LI      G + +A E ++           
Sbjct: 30  KGKGSASAVFAAIVETKGTQ-RSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPF 88

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + K  +     +EE+   G   +++ ++ LM   CK G    A  +   
Sbjct: 89  DTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDA 148

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+Y+TL+NG  + G L E   +   M   G++PD   Y  +I+  C   K
Sbjct: 149 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 208

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM++ G+ PN +T++       T++ G CK    + A ++Y  M ++S+S 
Sbjct: 209 MDDANELFDEMLVKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLSP 261

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           D +TY++LI   CKKGD+ ++  ++DE+ +    PD+ T++ ++
Sbjct: 262 DLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLI 305



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 129/244 (52%), Gaps = 9/244 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L++  C+   +  A  +F+ +   G+ P+V +Y++LM+G  + G   +   L   M+
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +   +P++ TYS L+NGLCKE K+ +A E+ D M ++GL P+   +  +I   C  G+  
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A     +M+   ++P+ +T+       NT++ GLCK  D  +A  +   M  + +  D 
Sbjct: 246 LAMEIYKQMLSQSLSPDLITY-------NTLIYGLCKKGDLKQAHHLIDEMSMKELKPDK 298

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TY++LI   CK+GD+  +      ++ +    DE  ++A+++ L    +    AE +L 
Sbjct: 299 ITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGR-SVDAEKMLR 357

Query: 468 ELMN 471
           E++N
Sbjct: 358 EMLN 361



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 61/241 (25%)

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKR------------------HRPNIVTYSTLLN 304
           +Y +++  LC     S+A  L+Q+++S++                   R ++  +S L+ 
Sbjct: 2   SYCTMIHFLCTQQMLSEAKSLIQVVVSRKGKGSASAVFAAIVETKGTQRSDLYVFSGLIT 61

Query: 305 GLCKEGKLQEAVE-------------------ILDR-MKLQGLKPDAGLYGKIISC---- 340
              + G L++A+E                   +L+  MKL+  K   G Y +I+ C    
Sbjct: 62  AYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 121

Query: 341 -----------FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388
                      FC  G  + A +  D +   G+ P+ +++       NT++ G  +  D 
Sbjct: 122 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY-------NTLMNGYIRLGDL 174

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           +  F++  +M    +  D  TYS LI   CK+  +  +  + DE+++ G +P+  T++ +
Sbjct: 175 DEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 234

Query: 449 M 449
           +
Sbjct: 235 I 235


>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
 gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01400, mitochondrial; Flags: Precursor
 gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 466

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 193/384 (50%), Gaps = 11/384 (2%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           +  +V +LI ++ D   A  IFD A+ +    FRH  S+  ++I KL     F   +D+L
Sbjct: 50  SPTRVQKLIASQSDPLLAKEIFDYASQQ--PNFRHSRSSHLILILKLGRGRYFNLIDDVL 107

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV-E 132
            +       +T +IF  + + Y     P   +  F KM EF   P PK    +L +LV  
Sbjct: 108 AKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSH 167

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              L+ AF  ++  R  G+ P   S N+L++A C N   +  A+++F +M  R   PD  
Sbjct: 168 RGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLND-DLSIAYQLFGKMLERDVVPDVD 226

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +Y  LI G CR G++  A EL  +M  K   P  ++YT+L+N LC+   + EA +L   M
Sbjct: 227 SYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRM 286

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           + KG  P++  Y++++ G C+   +  A ++L  M+S    PN V+Y TL+ GLC +G  
Sbjct: 287 KLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMF 346

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            E  + L+ M  +G  P   +   ++  FC  GK +EA + ++ ++  G T +  TW + 
Sbjct: 347 DEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEM- 405

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYL 396
                 V+  +C  D +   +++L
Sbjct: 406 ------VIPLICNEDESEKIKLFL 423



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 120/256 (46%), Gaps = 10/256 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG-GCSSQAMELLQMM 287
           +T LI    ++K  E+ +  F +M      P     + ++D L    G   +A EL +  
Sbjct: 122 FTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSS 181

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                 PN  +Y+ L+   C    L  A ++  +M  + + PD   Y  +I  FC  G+ 
Sbjct: 182 RLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQV 241

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVD 406
             A   LD+M+  G  P+RL+++       T++  LC KT    A+++   M+ +  + D
Sbjct: 242 NGAMELLDDMLNKGFVPDRLSYT-------TLLNSLCRKTQLREAYKLLCRMKLKGCNPD 294

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            + Y+++I  FC++     + +++D+++ +GC P+  ++  ++  L D + M    +  L
Sbjct: 295 LVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCD-QGMFDEGKKYL 353

Query: 467 LELMNKCVEAEVDIQN 482
            E+++K       + N
Sbjct: 354 EEMISKGFSPHFSVSN 369



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE-GKLQEAVEIL 319
           +FTY  L+    +     + +     M+     P     + +L+ L    G LQ+A E+ 
Sbjct: 121 IFTY--LIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELF 178

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
              +L G+ P+   Y  ++  FC       A     +M+   + P+  ++ +       +
Sbjct: 179 KSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKI-------L 231

Query: 380 VQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +QG C K   N A ++   M N+    D L+Y++L+   C+K  + ++ +++  + L GC
Sbjct: 232 IQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGC 291

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            PD   ++ ++       +   A ++L   L N C    V
Sbjct: 292 NPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSV 331


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 197/371 (53%), Gaps = 12/371 (3%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           GR+    +A ++ D+M+     P   SY T++   +E +++  AF+    M E G++P  
Sbjct: 327 GRIE---EAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNA 383

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N+++K  CK  G MD A     +M   G +PD  TY TLING C+ G + EA     
Sbjct: 384 VTHNIMVKWYCK-EGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMD 442

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM  K      VT  +++  LC+ K +EEA +L    R +G   +  +Y +L+ G  K G
Sbjct: 443 EMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDG 502

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A++L   M  K   P+ VTY+ ++ GLC+ GK ++A+  L+ +   GL PD   Y 
Sbjct: 503 NVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYN 562

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
            I+  +C  G  ++A  F ++MV     P+  T        N +++GLC      +A ++
Sbjct: 563 TILHGYCREGDVEKAFQFHNKMVENSFKPDVFTC-------NILLRGLCMEGVLEKALKL 615

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           + +  ++  ++D++TY++LIT  CK+G +  +  ++ E+      PD  T++A++TAL D
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTD 675

Query: 455 RRKMRQAAELL 465
             ++R+A E +
Sbjct: 676 SGRIREAEEFM 686



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 209/426 (49%), Gaps = 47/426 (11%)

Query: 82  DITEDIFLSICR--------------GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           D   D+ LSI R               Y +  +P  A ++F KMK     P   +  T+L
Sbjct: 118 DRRHDLHLSILRLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLL 177

Query: 128 AILV---EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
             LV     + +  +   +    ++GI P V + N++I   C  +   DA  +    M  
Sbjct: 178 NSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAV-EFLNVMGK 236

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
             C+PD+ TY T+++ LC+ G++ +A++L  +M+++   P   TY  L+ G C+   ++E
Sbjct: 237 YNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKE 296

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A  + E M    + P+V+TY+ L++GLC  G   +A +L   M + +  P++V+Y+TL+N
Sbjct: 297 AANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLIN 356

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G  +  K+ EA ++L+ M  +G+KP+A  +  ++  +C  GK  +A+N + +M   G +P
Sbjct: 357 GCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSP 416

Query: 365 NRLTWSLHIRIH----------------------------NTVVQGLCKTDP-NRAFQVY 395
           + +T++  I  +                            NT+++ LC+      A+++ 
Sbjct: 417 DCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLL 476

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            S R R   +D ++Y +LI  + K G++ ++ ++ DE+     +P   T++ ++  L   
Sbjct: 477 SSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQC 536

Query: 456 RKMRQA 461
            K  QA
Sbjct: 537 GKTEQA 542



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 172/368 (46%), Gaps = 19/368 (5%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  GY +     +A R  D+M     +    +  T+L  L  E +L+ A++     R+ 
Sbjct: 423 TLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G      S   LI    K+ G +D A K++ EM  +   P + TY  +I GLC+ GK  +
Sbjct: 483 GYFIDEVSYGTLIVGYFKD-GNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQ 541

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A     E+      P   TY ++++G C+   VE+A +   +M     +P+VFT + L+ 
Sbjct: 542 AISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLR 601

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC  G   +A++L    +SK    + VTY+TL+  LCKEG+L +A  +L  M+ + L P
Sbjct: 602 GLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGP 661

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
           D   Y  II+   D G+ +EA  F+ +M+  G  P+++   L +  + TVV         
Sbjct: 662 DHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQV---LQLDKNETVVT-------- 710

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
                  S  +      S+ YS  I   C +G    + RI  E    G   D+ T+  +M
Sbjct: 711 -------SETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLM 763

Query: 450 TALWDRRK 457
             L  RRK
Sbjct: 764 DGLIKRRK 771



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 86/195 (44%), Gaps = 17/195 (8%)

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC- 342
           L + I +   P+     T +    + G+   A +I  +MK   L+P+      +++    
Sbjct: 123 LHLSILRLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVR 182

Query: 343 -----DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS 397
                 +   +EA N   + +  GI PN       +   N V+ G C  +  +    +L+
Sbjct: 183 YPSSHSVSFSREAFN---DAIKLGIVPN-------VNTFNIVIYGYCLENKFKDAVEFLN 232

Query: 398 -MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   + S D++TY++++   CKKG +  +  ++ ++   G LP+  T++ ++       
Sbjct: 233 VMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMG 292

Query: 457 KMRQAAELLLLELMN 471
            +++AA ++ L   N
Sbjct: 293 WLKEAANVIELMTQN 307


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 234/458 (51%), Gaps = 21/458 (4%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE--DLLD 74
           ++L+L+++E D   AL   D   + +   +         ++ +L +++  R      +L 
Sbjct: 16  RLLELMKSEPDPATALAHLDLLVSTWP-AYTPPQPLLFHLLRRLATSSPSRLPRLLGILP 74

Query: 75  RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-GCEPTPKSYITVLAILVEE 133
           R+ + +   +E   L +   + R   P  A+  F ++  F GC P  +S+  +L   V  
Sbjct: 75  RL-RHRPRFSESAALVVLSAFSRALMPDAALAAFRRLPSFLGCNPGVRSHNALLDAFVRA 133

Query: 134 NQLKLAFRFYRHMREIG----IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
            +   A  F+  +        I P + + N+++++LC   G +D A  +F  +  RG  P
Sbjct: 134 RRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVR-GDLDRAVTLFDSLRCRGLAP 192

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D  TY TL++G  +  ++  A  L  EM +    P  V Y +L+ G  ++   E+AMR++
Sbjct: 193 DRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVW 252

Query: 250 EEM-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           E++ R  G  PN+ TY+ ++DGLCK G   +A ++ + M++  H+P+++TY T+++GLC+
Sbjct: 253 EQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCR 312

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
              +  A  +   M   GL PD  +Y  ++  FC  G+  EA  F D M + GI      
Sbjct: 313 STDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR----- 367

Query: 369 WSLHIRIHNTVVQGLCKTD-PNRAFQVY-LSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
              ++  +N +++GL      ++A  ++ L  ++ S+S D +T+S++I   C+KG  +KS
Sbjct: 368 ---NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKS 424

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            +I++E    G   DE ++S++++ L    ++  A +L
Sbjct: 425 LQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKL 462



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 214/434 (49%), Gaps = 13/434 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+++M+  L        A  L D +           + ++  G+ + +R  +A+ + D+M
Sbjct: 161 TYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEM 220

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSG 170
             +  +P    Y  +L       + + A R +  + R+ G  P +A+ NV++  LCK  G
Sbjct: 221 PSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCK-LG 279

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
               A  ++  M      PD  TYGT+I+GLCR   +  A  ++ EM      P VV Y 
Sbjct: 280 MFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYN 339

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           SL+ G C +  V EA + ++ M   G+  NV +Y+ ++ GL  GG   +A +L +++   
Sbjct: 340 SLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKD 398

Query: 291 RH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
               P++VT+ST+++GLC++G   ++++IL+  +  G + D   Y  +IS  C  G+  +
Sbjct: 399 DSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDD 458

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A    +++ +    PN         I+N ++ G C+    + A +VY  M     S  ++
Sbjct: 459 AVKLYEKISMDSFKPNS-------HIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTI 511

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY++LI   CK     +++R   E++  GC+ D  T+ +++  L   +K+   A  L  +
Sbjct: 512 TYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKI-DGALALWNQ 570

Query: 469 LMNKCVEAEVDIQN 482
           +++K ++ +V + N
Sbjct: 571 ILDKGLQTDVVMHN 584



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 221/442 (50%), Gaps = 15/442 (3%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+++A+ +FDS       G   D  T+S ++S  V  N+   A  LLD +   +      
Sbjct: 174 DLDRAVTLFDSLRCR---GLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAV 230

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            + ++  G  R      AMRV++++ ++ G  P   +Y  +L  L +    K A   +  
Sbjct: 231 CYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWER 290

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M     QP + +   +I  LC+ S  +D+A +++ EM   G  PD   Y +L+ G C  G
Sbjct: 291 MVANNHQPDMITYGTMIHGLCR-STDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAG 349

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM-RSKGVEPNVFTY 264
           ++ EA + +  M        V +Y  ++ GL     V++A  L+E + +   + P++ T+
Sbjct: 350 RVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTF 408

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           S+++ GLC+ G +++++++L+   +     +  +YS++++GLCK+G+L +AV++ +++ +
Sbjct: 409 STMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISM 468

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
              KP++ +Y  +I+ FC   K+ +A     +M     +P  +T+       NT++ GLC
Sbjct: 469 DSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITY-------NTLIHGLC 521

Query: 385 KTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K +    A +    M  +   +D  TY SLI   C+   I  +  + ++++  G   D  
Sbjct: 522 KAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVV 581

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
             + ++  L    K+ +A++LL
Sbjct: 582 MHNILIHGLCSAGKVDEASQLL 603



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 202/413 (48%), Gaps = 12/413 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           AN  + D  T+  MI  L  +     A  +   + K        I+ S+ +G+    R  
Sbjct: 293 ANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVG 352

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVL 161
           +A + +D M   G      SY  +L  L +   +  A   +  + ++  + P + + + +
Sbjct: 353 EAWKFWDSMSVSGIRNV-TSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTM 411

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I  LC+  G  + + +I  E    G   D ++Y ++I+GLC+ G++ +A +L++++   +
Sbjct: 412 IHGLCEK-GFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDS 470

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P    Y +LING CQ+    +A+R++ +M      P   TY++L+ GLCK     +A 
Sbjct: 471 FKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEAS 530

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
              + M+ K    ++ TY +L+ GLC++ K+  A+ + +++  +GL+ D  ++  +I   
Sbjct: 531 RFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGL 590

Query: 342 CDIGKYQEAANFLDEMV-LGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMR 399
           C  GK  EA+  L EM       PN +T+       NT++ G  +T   ++A  +++++ 
Sbjct: 591 CSAGKVDEASQLLSEMKEKNNCCPNVVTY-------NTLMDGFYETGCFDKAASLWMAIL 643

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
              +  D ++Y++ I   C      +  ++++E++  G +P   TW+ ++ A+
Sbjct: 644 ENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAV 696



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 150/309 (48%), Gaps = 2/309 (0%)

Query: 41  EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           E  +    D  TFS MI  L        +  +L+       ++ E  + S+  G  +  R
Sbjct: 396 EKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGR 455

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             DA+++++K+     +P    Y  ++    + ++   A R Y  M E    P   + N 
Sbjct: 456 LDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNT 515

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI  LCK    ++A+ +  REM  +GC  D  TYG+LI GLCR  KI  A  L+ ++  K
Sbjct: 516 LIHGLCKAEKYLEAS-RFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDK 574

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSSLMDGLCKGGCSSQ 279
                VV +  LI+GLC +  V+EA +L  EM+ K    PNV TY++LMDG  + GC  +
Sbjct: 575 GLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDK 634

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  L   ++     P+I++Y+T + GLC   +  E V++L+ M   G+ P A  +  ++ 
Sbjct: 635 AASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVR 694

Query: 340 CFCDIGKYQ 348
                G  Q
Sbjct: 695 AVIKYGPIQ 703


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 220/483 (45%), Gaps = 74/483 (15%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPL 102
           F  D   ++ M+S L  A+ F+ A D+LDR+    C    +T  I LS C G G++ R  
Sbjct: 268 FVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGR-- 325

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
              R+   M   GC P  + + +++    +      A++ ++ M + G QP     N+ I
Sbjct: 326 -CKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFI 384

Query: 163 KALCKN----------------------------------------SGTMDAAFKIFREM 182
            ++C N                                        +G  D AF+I  EM
Sbjct: 385 GSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEM 444

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
            ++G  PD  TY  +I  LC   K+ +A  LF+EM+     P+V TYT LI+  C++  +
Sbjct: 445 MSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLI 504

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           ++A   F+EM      PNV TY+SL+    K      A +L +MM+ +  +PN+VTY+ L
Sbjct: 505 QQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTAL 564

Query: 303 LNGLCKEGKLQEAVEILDRMKLQG------------------LKPDAGLYGKIISCFCDI 344
           ++G CK G++ +A +I  RM  QG                    P+   YG ++   C  
Sbjct: 565 IDGHCKAGQIDKACQIYARM--QGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKA 622

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            + +EA   LD M + G  PN++       +++ ++ G CKT     A +V++ M  R  
Sbjct: 623 NRVEEAHELLDTMSVNGCEPNQI-------VYDALIDGFCKTGKLENAQEVFVKMSERGY 675

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TYSSLI    K+  +    +++ +++ + C P+   ++ ++  L    K  +A  
Sbjct: 676 CPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYR 735

Query: 464 LLL 466
           L+L
Sbjct: 736 LML 738



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 223/487 (45%), Gaps = 59/487 (12%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + GF  D+ST+S +I  L  A++   A  L + + K     +   +  +   + +     
Sbjct: 446 SKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQ 505

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A   FD+M    C P   +Y +++   ++  ++  A + +  M   G +P V +   LI
Sbjct: 506 QARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALI 565

Query: 163 KALCKNSGTMDAAFKIFREMP---------------NRGC-TPDSYTYGTLINGLCRLGK 206
              CK +G +D A +I+  M                +  C TP+  TYG L++GLC+  +
Sbjct: 566 DGHCK-AGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANR 624

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + EA EL   M    C P  + Y +LI+G C++  +E A  +F +M  +G  PN++TYSS
Sbjct: 625 VEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSS 684

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L++ L K       +++L  M+     PN+V Y+ +++GLCK GK +EA  ++ +M+  G
Sbjct: 685 LINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVG 744

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT------------------ 368
             P+   Y  +I  F  IGK ++      +M   G  PN +T                  
Sbjct: 745 CYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAH 804

Query: 369 ----------WSLHIRIHNTVVQGLCKTDPNRAFQVYLSM-----RNRSISVDSLTYSSL 413
                     W  HI  +  +++G      NR F   + +      N S+ V+SL Y  L
Sbjct: 805 RLLDEMKQTYWPRHISSYRKIIEGF-----NREFITSIGLLDELSENESVPVESL-YRIL 858

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCL--PDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           I  F K G +  +  +++E+     L   ++  +++++ +L    K+ +A E L   ++N
Sbjct: 859 IDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFE-LYASMIN 917

Query: 472 KCVEAEV 478
           K V  E+
Sbjct: 918 KNVVPEL 924



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 175/375 (46%), Gaps = 21/375 (5%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+    ++K+FG + +P +Y  ++ + +  ++L  AF  +R M   G +    +L     
Sbjct: 189 ALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAY 248

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK     DA   + +E       PD+  Y  +++GLC      EA ++   M + +C 
Sbjct: 249 SLCKAGRCGDALSLLEKE----EFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCI 304

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY  L++G      +    R+   M ++G  PN   ++SL+   CK    S A +L
Sbjct: 305 PNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKL 364

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKL--QEAVEILDRMKLQGLKPDAGLYGKIIS-- 339
            + MI    +P  + Y+  +  +C   +L   + +E+ ++   + L     L    +S  
Sbjct: 365 FKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNF 424

Query: 340 --CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
             C C  GK+ +A   + EM+  G  P+  T+S        V+  LC      +AF ++ 
Sbjct: 425 ARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYS-------KVIGFLCDASKVEKAFLLFE 477

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+   I     TY+ LI  FCK G I ++    DE++ D C P+  T+++++ A    R
Sbjct: 478 EMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKAR 537

Query: 457 KMRQAA---ELLLLE 468
           K+  A    E++LLE
Sbjct: 538 KVFDANKLFEMMLLE 552



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 155/341 (45%), Gaps = 36/341 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  ++  L  AN+   A +LLD ++   C+  + ++ ++  G+ +  +  +A  VF KM
Sbjct: 611 TYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKM 670

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E G  P   +Y +++  L +E +L L  +    M E    P V     +I  LCK  G 
Sbjct: 671 SERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCK-VGK 729

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            + A+++  +M   GC P+  TY  +I+G  ++GKI +  EL+++M +K C+P  +TY  
Sbjct: 730 TEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRV 789

Query: 232 LINGLCQSKSVEEAMRLFEEMRS--------------KGVEPNVFT-------------- 263
           LIN  C +  ++EA RL +EM+               +G      T              
Sbjct: 790 LINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSENESV 849

Query: 264 -----YSSLMDGLCKGGCSSQAMELLQMMISKRHRP--NIVTYSTLLNGLCKEGKLQEAV 316
                Y  L+D   K G    A+ LL+ + S       N   Y++L+  L    K+ +A 
Sbjct: 850 PVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAF 909

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           E+   M  + + P+   +  +I     +GK+QEA    D +
Sbjct: 910 ELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSI 950



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 153/386 (39%), Gaps = 56/386 (14%)

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD-AAFKIFREMPNRGCT 188
           LV+  +  + F F    R+IG        N LI+ LC N+   D  + K   ++ +    
Sbjct: 109 LVKHPEFCVEF-FLWASRQIGYSHTPVVYNALIELLCCNAVNNDRVSHKFLMQIRDDDRE 167

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
                   LI   CR G    A E    ++      +  TY +LI    ++  ++ A  +
Sbjct: 168 LLRKLLNFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLV 227

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             EM + G   +  T       LCK G    A+ LL+    +   P+ V Y+ +++GLC+
Sbjct: 228 HREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLE---KEEFVPDTVFYNRMVSGLCE 284

Query: 309 EGKLQEAVEILDRMK-----------------------------------LQGLKPDAGL 333
               QEA++ILDRM+                                    +G  P+  +
Sbjct: 285 ASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREM 344

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD--PNR- 390
           +  ++  +C    Y  A     +M+  G  P  L       ++N  +  +C  +  P   
Sbjct: 345 FNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYL-------LYNIFIGSICSNEELPGSD 397

Query: 391 ----AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
               A + Y  M +  + ++ +  S+   C C  G   K+  I+ E++  G +PD+ T+S
Sbjct: 398 LLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYS 457

Query: 447 AVMTALWDRRKMRQAAELLLLELMNK 472
            V+  L D  K+ +A   LL E M K
Sbjct: 458 KVIGFLCDASKVEKA--FLLFEEMKK 481



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 14/194 (7%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+ ++I+   S      A  LLD + +         +  I  G+ R    + ++ + D++
Sbjct: 786 TYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNR--EFITSIGLLDEL 843

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN-----VLIKALC 166
            E    P    Y  ++   ++  +L+ A      + EI   P +A  N      LI++L 
Sbjct: 844 SENESVPVESLYRILIDNFIKAGRLEGALNL---LEEISSSPSLAVANKYLYTSLIESL- 899

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK---EMETKACS 223
            ++  +D AF+++  M N+   P+  T+  LI GL R+GK  EA +L     +M    CS
Sbjct: 900 SHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSICQMVCHVCS 959

Query: 224 PTVVTYTSLINGLC 237
             V   T+    LC
Sbjct: 960 NFVNYKTTRALPLC 973


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 186/351 (52%), Gaps = 9/351 (2%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C   P  +  ++ + ++E  +  A   +  +  +G +P V + N+++ ++ K+  T +  
Sbjct: 159 CNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRT-ELV 217

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           + +FREM ++G  P+  T+  LINGLC  G + +A  L K+ME     PT+VTY +L+N 
Sbjct: 218 WSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNW 277

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C+    + A+ L + M  KG+E +V TY+  +D LC    S++A  LL+ M  +   PN
Sbjct: 278 YCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPN 337

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
            VTY+TL+NG  KEGK+  A ++ + M    L P+   Y  +I   C +G ++EA   LD
Sbjct: 338 EVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLD 397

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLI 414
            M   G+  N +T+        T++ GLCK +    A ++   MR   + V  + Y+ LI
Sbjct: 398 HMEAAGLRLNEVTYG-------TLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLI 450

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              CK G + ++ ++V  +  DG  PD  T+S+++        ++ A E++
Sbjct: 451 DGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEII 501



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 209/422 (49%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+++ I  L + ++   A  LL ++ KE     E  + ++  G+ +  +   A
Sbjct: 298 GIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVA 357

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            +VF++M +F   P   +Y  ++         + A R   HM   G++    +   L+  
Sbjct: 358 AQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNG 417

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+    + A ++   M           Y  LI+GLC+ G + EA +L   M     +P
Sbjct: 418 LCKHE-KFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNP 476

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V+TY+SLING C+  +++ A  +   M   G+  N   YS+L+   C+ G  ++AM++ 
Sbjct: 477 DVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVY 536

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M    H  +  T + L++ LC++GKL EA + L  M   GL P++  Y  II+ +  I
Sbjct: 537 AVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSI 596

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSI 403
           G    A +F D+M+  G  P+  T+        ++++GLCK       + +L+ +     
Sbjct: 597 GDPLNAFSFFDDMIKCGQHPSFFTYG-------SLLKGLCKGGNLVEAKKFLNRLHYIPG 649

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           +VDS+ Y++L+   CK G++H++  + D++V +  LPD  T+S+++T L  + K   A  
Sbjct: 650 AVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVC 709

Query: 464 LL 465
           L 
Sbjct: 710 LF 711



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 184/370 (49%), Gaps = 9/370 (2%)

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           C+    +F  + R Y +      A+  F+ +   G +P+  +   +LA +V++ + +L +
Sbjct: 159 CNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVW 218

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
             +R M + GI P V + N+LI  LC   G +  A  + ++M   G  P   TY TL+N 
Sbjct: 219 SLFREMSDKGICPNVGTFNILINGLCV-EGNLKKAGNLLKQMEENGFVPTIVTYNTLLNW 277

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C+ G+   A EL   M  K     V TY   I+ LC +    +A  L ++MR + + PN
Sbjct: 278 YCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPN 337

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY++L++G  K G    A ++   M      PN VTY+ L+ G C  G  +EA+ +LD
Sbjct: 338 EVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLD 397

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M+  GL+ +   YG +++  C   K++ A   L+ M +  +    + +++       ++
Sbjct: 398 HMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTV-------LI 450

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GLCK    + A Q+  +M    ++ D +TYSSLI  FC+ G+I  +  I+  +   G +
Sbjct: 451 DGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLV 510

Query: 440 PDEGTWSAVM 449
            ++  +S ++
Sbjct: 511 LNKIIYSTLI 520



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 213/510 (41%), Gaps = 81/510 (15%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---------- 76
           D  +AL + D   A    G R +  T+  +++ L    +F  A+ LL+R+          
Sbjct: 388 DFEEALRLLDHMEAA---GLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHI 444

Query: 77  -----------------------NKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKM 111
                                  N  K  +  D+  + S+  G+ RV     A  +  +M
Sbjct: 445 AYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM 504

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---- 167
              G       Y T++    +   +  A + Y  M   G      + NVL+ +LC+    
Sbjct: 505 YRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKL 564

Query: 168 -----------------NSGTMDA-------------AFKIFREMPNRGCTPDSYTYGTL 197
                            NS T D              AF  F +M   G  P  +TYG+L
Sbjct: 565 GEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSL 624

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           + GLC+ G + EAK+    +     +   V Y +L+   C+S ++ EA+ LF++M    V
Sbjct: 625 LKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNV 684

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR-PNIVTYSTLLNGLCKEGKLQEAV 316
            P+ +TYSSL+ GLC+ G +  A+ L    + +    PN V Y+ L++GL K G  + A 
Sbjct: 685 LPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAF 744

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
              + M  +G  PD   +  II      G+  +A +F   M   G+ PN  T+       
Sbjct: 745 YFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATY------- 797

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N ++ G  K     R   +Y +M    I  D LT+ SLI    K G      +++ ++++
Sbjct: 798 NILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIM 857

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +G L D+ T++ ++    +  KMR+A +L+
Sbjct: 858 EGTLADQFTFNILINKYSESGKMRKAFDLV 887



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 201/467 (43%), Gaps = 53/467 (11%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLL---DRVNKEKCDITEDIFLSICRGYGRVHR 100
           NG   D+ T ++++S L    +   AE  L    R+      IT D    I  GYG +  
Sbjct: 542 NGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYD---CIINGYGSIGD 598

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           PL+A   FD M + G  P+  +Y ++L  L +   L  A +F   +  I         N 
Sbjct: 599 PLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNT 658

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF-KEMET 219
           L+   CK SG +  A  +F +M      PDSYTY +L+ GLCR GK   A  LF   M  
Sbjct: 659 LLAETCK-SGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGR 717

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG----------------------- 256
               P  V YT L++GL ++   + A   FEEM  KG                       
Sbjct: 718 GTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMK 777

Query: 257 ------------VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
                       V PN+ TY+ L+ G  K     + + L   M+ +   P+ +T+ +L+ 
Sbjct: 778 ANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLIL 837

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           GL K G     V++L +M ++G   D   +  +I+ + + GK ++A + ++ M   G+ P
Sbjct: 838 GLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFP 897

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDI 423
           +R T+       N +  GL K    R   V L  M    +      Y +LI   C+ GDI
Sbjct: 898 DRDTY-------NHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDI 950

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
             + ++ DE+   G    E   SA++  L    K   A  +L+L+ M
Sbjct: 951 QGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDA--MLVLDHM 995



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/461 (22%), Positives = 199/461 (43%), Gaps = 45/461 (9%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           Y +G   D  T+S +I+        + A++++ R+ +    + + I+ ++   + +    
Sbjct: 470 YKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNV 529

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +AM+V+  M   G      +   +++ L  + +L  A +F  HM  IG+ P   + + +
Sbjct: 530 TEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCI 589

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE--------- 212
           I         ++A F  F +M   G  P  +TYG+L+ GLC+ G + EAK+         
Sbjct: 590 INGYGSIGDPLNA-FSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIP 648

Query: 213 --------------------------LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
                                     LF +M      P   TY+SL+ GLC+      A+
Sbjct: 649 GAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAV 708

Query: 247 RLFEEMRSKG-VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            LF     +G + PN   Y+ L+DGL K G    A    + M+ K   P+ V ++ +++ 
Sbjct: 709 CLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDS 768

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
             + G++ +A +    M+  G+ P+   Y  ++  F          +    M+  GI P+
Sbjct: 769 CSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPD 828

Query: 366 RLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
           +LT+       ++++ GL K+  P+   ++   M       D  T++ LI  + + G + 
Sbjct: 829 KLTF-------HSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMR 881

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           K+  +V+ +   G  PD  T++ +   L  +   R++  +L
Sbjct: 882 KAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVL 922



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 170/397 (42%), Gaps = 9/397 (2%)

Query: 49   DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
            ++  ++ ++  L  A   + A    + + K+        F +I     R  + + A   F
Sbjct: 723  NHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFF 782

Query: 109  DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
              M+ +G  P   +Y  +L    ++  L      Y  M   GI P   + + LI  L K 
Sbjct: 783  STMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSK- 841

Query: 169  SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            SG  D   K+  +M   G   D +T+  LIN     GK+ +A +L   M T    P   T
Sbjct: 842  SGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDT 901

Query: 229  YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
            Y  + NGL +  +  E+  +  EM   GV P    Y +L++G+C+ G    A +L   M 
Sbjct: 902  YNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEME 961

Query: 289  SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +     + V  S ++ GL   GK ++A+ +LD M    L P    +  ++  FC   K  
Sbjct: 962  ALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIA 1021

Query: 349  EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            EA      M L G+        L +  +N ++ G+C   D   AF++Y  MR+R +  + 
Sbjct: 1022 EALKLKGVMELCGL-------KLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNI 1074

Query: 408  LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             TY+ L+       ++ +  +++ +L   G +   G+
Sbjct: 1075 TTYAVLVDAISAANNLIQGEKLLTDLQERGLISWGGS 1111


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 194/388 (50%), Gaps = 13/388 (3%)

Query: 83  ITEDIFLS--ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
            T ++F+   + +G  R     +AM +  +M      P   SY T++  L +  +LK A 
Sbjct: 140 FTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAV 199

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
                M   G  P   +   L+  LCK+ G MD A ++   M  +G   D   YGTLI+G
Sbjct: 200 GLLLEMEAAGCFPNSVTCTTLMDGLCKD-GRMDEAMELLEAMKKKGFDADVVLYGTLISG 258

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C  G +   KELF EM  K  S  VVTY+ L++GLC+    +EA  +   M   G+ P+
Sbjct: 259 FCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPD 318

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           V TY+ L+DGLCK G ++ AM+LL +M+ K   P+ VTY+ LL+GLCKEG + +A +IL 
Sbjct: 319 VVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILR 378

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG--ITPNRLTWSLHIRIHNT 378
            M  +G K D   Y  ++   CD GK  EA    + M      + PN  T+       N 
Sbjct: 379 MMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF-------NM 431

Query: 379 VVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ GLCK     +A +++  M  +    + +TY+ L+    K G I ++  +  +++  G
Sbjct: 432 LIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLG 491

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +P+  T+S ++      R +  A  L 
Sbjct: 492 FVPNSFTYSILIDGFCKMRMLNIAKGLF 519



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 190/364 (52%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +F    +F   P+  +   ++  L       LAF  YR M  + + P   SL+ LI
Sbjct: 57  EAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALI 116

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           +    ++      F +   +  RG T + +    ++ GLCR G ++EA  L +EM  K+ 
Sbjct: 117 ECF-ADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSV 175

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP +V+Y +LINGLC++K ++EA+ L  EM + G  PN  T ++LMDGLCK G   +AME
Sbjct: 176 SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAME 235

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M  K    ++V Y TL++G C  G L    E+ D M  +G+  +   Y  ++   C
Sbjct: 236 LLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLC 295

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
            +G+++EA   L+ M   GI P+ +T++        ++ GLCK      A  +   M  +
Sbjct: 296 RLGQWKEANTVLNAMAEHGIHPDVVTYT-------GLIDGLCKDGRATHAMDLLNLMVEK 348

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
                ++TY+ L++  CK+G +  + +I+  ++  G   D  T++ +M  L D+ K+ +A
Sbjct: 349 GEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEA 408

Query: 462 AELL 465
            +L 
Sbjct: 409 LKLF 412



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 201/388 (51%), Gaps = 19/388 (4%)

Query: 37  SATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKCDITEDIFLSICR 93
           +A AE+  G   D  T++ +I  L    +   A DLL+ +    +E  ++T ++ LS   
Sbjct: 308 NAMAEH--GIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLS--- 362

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM--REIGI 151
           G  +    +DA ++   M E G +    +Y T++  L ++ ++  A + +  M   E  +
Sbjct: 363 GLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCL 422

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P V + N+LI  LCK  G +  A KI R+M  +G   +  TY  L+ G  + GKI EA 
Sbjct: 423 EPNVFTFNMLIGGLCK-EGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAM 481

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           EL+K++      P   TY+ LI+G C+ + +  A  LF EMR+ G+ P +F Y++LM  L
Sbjct: 482 ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 541

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
           CK G   QA  L Q M +    P+I++++T+++G  K G  Q   E+  +M   GL+PDA
Sbjct: 542 CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDA 601

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNR 390
             +  +I+    +G+  EA + L+ MV  G TP+ L       +++++++GL  K D   
Sbjct: 602 LTFSTLINRLSKLGELDEAKSALERMVASGFTPDAL-------VYDSLLKGLSSKGDTTE 654

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFC 418
              +   M  +   +D    S+++TC C
Sbjct: 655 IINLLHQMAAKGTVLDRKIVSTILTCLC 682



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 198/424 (46%), Gaps = 11/424 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D   +  +IS   +       ++L D +  +        +  +  G  R+ +  +A
Sbjct: 244 GFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEA 303

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             V + M E G  P   +Y  ++  L ++ +   A      M E G +P   + NVL+  
Sbjct: 304 NTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 363

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKAC- 222
           LCK    +D AFKI R M  +G   D  TY TL+ GLC  GK+ EA +LF  M + + C 
Sbjct: 364 LCKEGLVID-AFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCL 422

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V T+  LI GLC+   + +A+++  +M  KG   N+ TY+ L+ G  K G   +AME
Sbjct: 423 EPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAME 482

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + ++     PN  TYS L++G CK   L  A  +   M+  GL P    Y  +++  C
Sbjct: 483 LWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLC 542

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
             G  ++A +   EM      P+ +++       NT++ G  K  D     ++ + M   
Sbjct: 543 KEGSLEQAKSLFQEMGNANCEPDIISF-------NTMIDGTLKAGDFQFVKELQMKMVEM 595

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D+LT+S+LI    K G++ ++   ++ +V  G  PD   + +++  L  +    + 
Sbjct: 596 GLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEI 655

Query: 462 AELL 465
             LL
Sbjct: 656 INLL 659



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 187/396 (47%), Gaps = 11/396 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  +++ +I+ L  A + + A  LL  +    C        ++  G  +  R  +AM + 
Sbjct: 178 DIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELL 237

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + MK+ G +     Y T+++       L      +  M   GI   V + + L+  LC+ 
Sbjct: 238 EAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCR- 296

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G    A  +   M   G  PD  TY  LI+GLC+ G+   A +L   M  K   P+ VT
Sbjct: 297 LGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVT 356

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  L++GLC+   V +A ++   M  KG + +V TY++LM GLC  G   +A++L   M 
Sbjct: 357 YNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMF 416

Query: 289 SKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
              +   PN+ T++ L+ GLCKEG+L +AV+I  +M  +G   +   Y  ++      GK
Sbjct: 417 DNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGK 476

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
            +EA     +++  G  PN  T+S+       ++ G CK    N A  ++  MR   ++ 
Sbjct: 477 IKEAMELWKQVLDLGFVPNSFTYSI-------LIDGFCKMRMLNIAKGLFCEMRTHGLNP 529

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
               Y++L+   CK+G + ++  +  E+    C PD
Sbjct: 530 ALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPD 565



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 146/332 (43%), Gaps = 44/332 (13%)

Query: 158 LNVLIKALC-KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           L   +++LC K +     A  +F    +    P   T   L++ L R      A  +++ 
Sbjct: 40  LETQLRSLCQKPNSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRR 99

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M      P+  + ++LI     ++  +    +   +  +G   NVF  + ++ GLC+ G 
Sbjct: 100 MTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGG 159

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLN-------------------------------- 304
             +AM L++ M  K   P+IV+Y+TL+N                                
Sbjct: 160 VFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTT 219

Query: 305 ---GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
              GLCK+G++ EA+E+L+ MK +G   D  LYG +IS FC+ G         DEM+  G
Sbjct: 220 LMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKG 279

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           I+ N +T+S        +V GLC+      A  V  +M    I  D +TY+ LI   CK 
Sbjct: 280 ISANVVTYS-------CLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKD 332

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           G    +  +++ +V  G  P   T++ +++ L
Sbjct: 333 GRATHAMDLLNLMVEKGEEPSNVTYNVLLSGL 364



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 43/295 (14%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR-VNKEKCD--IT 84
           V++AL +F+S   +  N    +  TF+++I  L    +   A  +  + V K  C   +T
Sbjct: 405 VDEALKLFNS-MFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVT 463

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            ++ L  C   G++    +AM ++ ++ + G  P   +Y  ++    +   L +A   + 
Sbjct: 464 YNMLLGGCLKAGKIK---EAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFC 520

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD-------------- 190
            MR  G+ P +   N L+ +LCK  G+++ A  +F+EM N  C PD              
Sbjct: 521 EMRTHGLNPALFDYNTLMASLCK-EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKA 579

Query: 191 ---------------------SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
                                + T+ TLIN L +LG++ EAK   + M     +P  + Y
Sbjct: 580 GDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVY 639

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            SL+ GL       E + L  +M +KG   +    S+++  LC        MELL
Sbjct: 640 DSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELL 694


>gi|3193306|gb|AAC19289.1| contains similarity to Arabidopsis membrane-associated
           salt-inducible-like protein (GB:AL021637) [Arabidopsis
           thaliana]
          Length = 991

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 193/384 (50%), Gaps = 11/384 (2%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           +  +V +LI ++ D   A  IFD A+ +    FRH  S+  ++I KL     F   +D+L
Sbjct: 50  SPTRVQKLIASQSDPLLAKEIFDYASQQ--PNFRHSRSSHLILILKLGRGRYFNLIDDVL 107

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
            +       +T +IF  + + Y     P   +  F KM EF   P PK    +L +LV  
Sbjct: 108 AKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSH 167

Query: 134 -NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              L+ AF  ++  R  G+ P   S N+L++A C N   +  A+++F +M  R   PD  
Sbjct: 168 RGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLND-DLSIAYQLFGKMLERDVVPDVD 226

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +Y  LI G CR G++  A EL  +M  K   P  ++YT+L+N LC+   + EA +L   M
Sbjct: 227 SYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRM 286

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           + KG  P++  Y++++ G C+   +  A ++L  M+S    PN V+Y TL+ GLC +G  
Sbjct: 287 KLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMF 346

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            E  + L+ M  +G  P   +   ++  FC  GK +EA + ++ ++  G T +  TW + 
Sbjct: 347 DEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEM- 405

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYL 396
                 V+  +C  D +   +++L
Sbjct: 406 ------VIPLICNEDESEKIKLFL 423



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 123/258 (47%), Gaps = 14/258 (5%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG-GCSSQAMELLQMM 287
           +T LI    ++K  E+ +  F +M      P     + ++D L    G   +A EL +  
Sbjct: 122 FTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKS- 180

Query: 288 ISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            S+ H   PN  +Y+ L+   C    L  A ++  +M  + + PD   Y  +I  FC  G
Sbjct: 181 -SRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKG 239

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSIS 404
           +   A   LD+M+  G  P+RL+++       T++  LC KT    A+++   M+ +  +
Sbjct: 240 QVNGAMELLDDMLNKGFVPDRLSYT-------TLLNSLCRKTQLREAYKLLCRMKLKGCN 292

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D + Y+++I  FC++     + +++D+++ +GC P+  ++  ++  L D + M    + 
Sbjct: 293 PDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCD-QGMFDEGKK 351

Query: 465 LLLELMNKCVEAEVDIQN 482
            L E+++K       + N
Sbjct: 352 YLEEMISKGFSPHFSVSN 369



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 13/225 (5%)

Query: 253 RSKG--VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE- 309
           RS G  +   +FTY  L+    +     + +     M+     P     + +L+ L    
Sbjct: 111 RSSGYPLTGEIFTY--LIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHR 168

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G LQ+A E+    +L G+ P+   Y  ++  FC       A     +M+   + P+  ++
Sbjct: 169 GYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSY 228

Query: 370 SLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
            +       ++QG C K   N A ++   M N+    D L+Y++L+   C+K  + ++ +
Sbjct: 229 KI-------LIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYK 281

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++  + L GC PD   ++ ++       +   A ++L   L N C
Sbjct: 282 LLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGC 326


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 213/422 (50%), Gaps = 10/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R    T+++MI  +        A  L + +           + S+  G+G+V R  D 
Sbjct: 257 GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDT 316

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +  F++MK+  CEP   +Y  ++    +  +L +   FYR M+  G++P V S + L+ A
Sbjct: 317 VCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M  A K + +M   G  P+ YTY +LI+  C++G + +A  L  EM       
Sbjct: 377 FCK-EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEW 435

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+LI+GLC ++ ++EA  LF +M + GV PN+ +Y++L+ G  K     +A+ELL
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 495

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +  +  +P+++ Y T + GLC   K++ A  +++ MK  G+K ++ +Y  ++  +   
Sbjct: 496 NELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR-S 402
           G   E  + LDEM         L   + +     ++ GLCK    ++A   +  + N   
Sbjct: 556 GNPTEGLHLLDEM-------KELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFG 608

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  ++  ++++I   CK   +  +  + +++V  G +PD   ++++M   + +  + +A 
Sbjct: 609 LQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEAL 668

Query: 463 EL 464
            L
Sbjct: 669 AL 670



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 220/461 (47%), Gaps = 26/461 (5%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR--VNK 78
           L+  ++D   A   F  +     NGF+H   ++ ++   L  A  +  A  +L    ++K
Sbjct: 115 LVELKEDPKLAFKFFKWSMTR--NGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSK 172

Query: 79  EKCDITEDIFLS--IC-RGYGRVHRPL----------DAMRVFDKMKEFGCEPTPKSYIT 125
             CD+ + ++ +  +C  G+G                +A++ F KMK F   P  +S   
Sbjct: 173 ADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNG 232

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           +L    +  +     RF++ M   G +P V + N++I  +CK  G ++AA  +F EM  R
Sbjct: 233 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCK-EGDVEAARGLFEEMKFR 291

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD+ TY ++I+G  ++G++ +    F+EM+   C P V+TY +LIN  C+   +   
Sbjct: 292 GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 351

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           +  + EM+  G++PNV +YS+L+D  CK G   QA++    M      PN  TY++L++ 
Sbjct: 352 LEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
            CK G L +A  + + M   G++ +   Y  +I   CD  + +EA     +M   G+ PN
Sbjct: 412 NCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN 471

Query: 366 RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
                  +  +N ++ G  K  + +RA ++   ++ R I  D L Y + I   C    I 
Sbjct: 472 -------LASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIE 524

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  +++E+   G   +   ++ +M A +      +   LL
Sbjct: 525 AAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLL 565



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 169/360 (46%), Gaps = 26/360 (7%)

Query: 124 ITVLAILVE-ENQLKLAFRFYR-HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           I V  +LVE +   KLAF+F++  M   G +  V S  ++   L       DA   + +E
Sbjct: 109 IWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDAN-SVLKE 167

Query: 182 M---------------PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           M                   C P    +  L + L  LG + EA + F +M+     P  
Sbjct: 168 MVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKT 227

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            +   L++   +    ++  R F++M   G  P VFTY+ ++D +CK G    A  L + 
Sbjct: 228 RSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEE 287

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M  +   P+ VTY+++++G  K G+L + V   + MK    +PD   Y  +I+CFC  GK
Sbjct: 288 MKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK 347

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
                 F  EM   G+ PN +++S       T+V   CK     +A + Y+ MR   +  
Sbjct: 348 LPIGLEFYREMKGNGLKPNVVSYS-------TLVDAFCKEGMMQQAIKFYVDMRRVGLVP 400

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  TY+SLI   CK G++  + R+ +E++  G   +  T++A++  L D  +M++A EL 
Sbjct: 401 NEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELF 460



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T   ++  +   K V+KA+  F+  + ++  G + + + F+ MI  L   NQ   A 
Sbjct: 576 TVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF--GLQANAAIFTAMIDGLCKDNQVEAAT 633

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            L +++ ++        + S+  G  +    L+A+ + DKM E G +    +Y +++  L
Sbjct: 634 TLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGL 693

Query: 131 VEENQLKLAFRFYRHMREIGIQP 153
              NQL+ A  F   M   GI P
Sbjct: 694 SHCNQLQKARSFLEEMIGEGIHP 716


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 189/362 (52%), Gaps = 16/362 (4%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           SY TVLA L  +     A  F   +     +P   S   L++ALC    T   A  + R+
Sbjct: 80  SYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRT-GQAVGLLRD 138

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M   G  PD  TYGTLI GLC    + +A EL +EM      P VV Y+ L+ G C++  
Sbjct: 139 MQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGR 198

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
            E   ++FEEM  +G+EP+V  Y+ L+D LC+ G   +A +++  M+ +   PN+VTY+ 
Sbjct: 199 WECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNV 258

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L+N +CKEG ++EA+ + + M  +G+  DA  Y  +I+    + +  EA   L+EM+ G 
Sbjct: 259 LINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGE 318

Query: 362 --ITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFC 418
             + PN +T+       N+V+ GLCKT   R AFQV   M     + + +T++ LI    
Sbjct: 319 TMVEPNVVTF-------NSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLL 371

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA--AELLLLELMNKCVEA 476
           +   + K+  ++DE+   G  PD  T+S ++       KM Q   AE LL ++    +E 
Sbjct: 372 RVHKVKKAMELMDEMASSGLEPDSFTYSILINGFC---KMWQVDRAESLLSKMRRDGIEP 428

Query: 477 EV 478
           E+
Sbjct: 429 EL 430



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 231/459 (50%), Gaps = 17/459 (3%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T ++   +++ + AE+   +A+ +     A   +G R D  T+  +I  L  A     A 
Sbjct: 112 TAVSYTTLMRALCAERRTGQAVGLLRDMQA---SGVRPDVVTYGTLIRGLCDAADVDKAV 168

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           +LL  + +   +    ++  + +GY +  R     +VF++M   G EP    Y  ++  L
Sbjct: 169 ELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSL 228

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
             E ++K A +    M E G++P V + NVLI ++CK  G++  A  +   M  +G   D
Sbjct: 229 CREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKE-GSVKEAMSLRNNMLEKGVALD 287

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEM---ETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           + TY TLI GL  + ++ EA  L +EM   ET    P VVT+ S+I+GLC++  + +A +
Sbjct: 288 AVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMV-EPNVVTFNSVIHGLCKTGRMRQAFQ 346

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           + + M   G   N+ T++ L+ GL +     +AMEL+  M S    P+  TYS L+NG C
Sbjct: 347 VRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFC 406

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K  ++  A  +L +M+  G++P+   Y  +++  C+ G  ++A NF DEM          
Sbjct: 407 KMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEM--------HK 458

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKS 426
              L +  ++T++ G C+    ++ + +L  M +  +  DS+TYS LI  F   GD+  +
Sbjct: 459 NCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAA 518

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            R++ ++   G +PD   + +++     +    +  EL+
Sbjct: 519 ERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELI 557



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 193/382 (50%), Gaps = 23/382 (6%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +  ++CR  G     LDA     ++      PT  SY T++  L  E +   A    R M
Sbjct: 84  VLAALCRQGG----CLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDM 139

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +  G++P V +   LI+ LC ++  +D A ++ REM   G  P+   Y  L+ G C+ G+
Sbjct: 140 QASGVRPDVVTYGTLIRGLC-DAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGR 198

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
                ++F+EM  +   P VV YT LI+ LC+   V++A ++ ++M  +G+EPNV TY+ 
Sbjct: 199 WECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNV 258

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L++ +CK G   +AM L   M+ K    + VTY+TL+ GL    ++ EA+ +L+ M + G
Sbjct: 259 LINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEM-IHG 317

Query: 327 ---LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI----RIHNTV 379
              ++P+   +  +I   C  G+ ++A    D M   G   N +T++L I    R+H   
Sbjct: 318 ETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKV- 376

Query: 380 VQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
                     +A ++   M +  +  DS TYS LI  FCK   + ++  ++ ++  DG  
Sbjct: 377 ---------KKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIE 427

Query: 440 PDEGTWSAVMTALWDRRKMRQA 461
           P+   +  ++ AL ++  M QA
Sbjct: 428 PELVHYIPLLAALCEQGMMEQA 449



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 155/287 (54%), Gaps = 10/287 (3%)

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+ +Y T++  LCR G   +A      +      PT V+YT+L+  LC  +   +A+ L 
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            +M++ GV P+V TY +L+ GLC      +A+ELL+ M      PN+V YS LL G CK 
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKA 196

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+ +   ++ + M  +G++PD  +Y  +I   C  GK ++A   +D+M+  G+ PN +T+
Sbjct: 197 GRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTY 256

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N ++  +CK      A  +  +M  + +++D++TY++LIT      ++ ++  
Sbjct: 257 -------NVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMG 309

Query: 429 IVDELVLDGCL--PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           +++E++    +  P+  T+++V+  L    +MRQA ++  +   N C
Sbjct: 310 LLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGC 356


>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Glycine max]
          Length = 618

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/492 (27%), Positives = 243/492 (49%), Gaps = 41/492 (8%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           +   V QLI  +K  ++AL  F  A+      F H  ST+  +I KL +  +F   + LL
Sbjct: 35  SQEHVSQLILDQKSASEALEYFRWAST--VPNFVHSQSTYRALIHKLCTFRRFDTVKQLL 92

Query: 74  DRV-NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           D + +       +DIF++I RG GR       ++V D + +F   P+ K + ++L +LV+
Sbjct: 93  DEMPHSLGAPPGDDIFITIIRGLGRARMTRTVIKVLDLVYKFHGSPSLKIFNSILDVLVK 152

Query: 133 ENQLKLAFRFYRH-MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           E+ + +A  FYR  M   G++    +  +L+K LC  +  +   FK+ + + +RG  P++
Sbjct: 153 ED-IDMAREFYRKSMMASGVEGDDYTFGILMKGLCL-TNRIGEGFKLLQLIKSRGVAPNT 210

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
             Y TL++ LCR GK+  A+ L  EME     P  VT+  LI+G C+  +  +A+ L E+
Sbjct: 211 VVYNTLLHALCRNGKVGRARNLMNEME----DPNDVTFNILISGYCKEGNSVQALVLLEK 266

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
             S G  P+V + + +++ LC  G + +A E+L+ + S     ++V Y+TL+ G C  GK
Sbjct: 267 SFSMGFVPDVVSVTKVLEILCNAGRTMEAAEVLERVESMGGLLDVVAYNTLIKGFCGAGK 326

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           ++  +  L +M+ +G  P+   Y  +IS F + G    A +  ++M   GI  N +T+  
Sbjct: 327 VKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGMLDLALDLFNDMKTDGIKWNFVTFDT 386

Query: 372 ------------------------------HIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
                                         HI  +N+++ GL K +       +L+ +  
Sbjct: 387 LIRGLCSEERIEDGFSILELMEESKEGSRGHISPYNSIIYGLLKKNGFDESAEFLT-KMG 445

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           ++   ++  S +I   CKKG I  + R+ D+++ +G +P    ++ ++     +  +R+A
Sbjct: 446 NLFPRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREA 505

Query: 462 AELLLLELMNKC 473
            EL+   + N C
Sbjct: 506 VELMNEMIANNC 517



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 213/448 (47%), Gaps = 28/448 (6%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD----ITEDIFLSICRGYGRV 98
           A+G   D+ TF +++  L   N+      LL  +          +   +  ++CR  G+V
Sbjct: 168 ASGVEGDDYTFGILMKGLCLTNRIGEGFKLLQLIKSRGVAPNTVVYNTLLHALCRN-GKV 226

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
            R  + M   +       +P   ++  +++   +E     A         +G  P V S+
Sbjct: 227 GRARNLMNEME-------DPNDVTFNILISGYCKEGNSVQALVLLEKSFSMGFVPDVVSV 279

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
             +++ LC    TM+AA ++   + + G   D   Y TLI G C  GK+       K+ME
Sbjct: 280 TKVLEILCNAGRTMEAA-EVLERVESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQME 338

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            K C P V TY  LI+G  +S  ++ A+ LF +M++ G++ N  T+ +L+ GLC      
Sbjct: 339 NKGCLPNVDTYNVLISGFSESGMLDLALDLFNDMKTDGIKWNFVTFDTLIRGLCSEERIE 398

Query: 279 QAMELLQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
               +L++M   +   R +I  Y++++ GL K+    E+ E L +M    L P A     
Sbjct: 399 DGFSILELMEESKEGSRGHISPYNSIIYGLLKKNGFDESAEFLTKMG--NLFPRAVDRSL 456

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVY 395
           +I   C  G  ++A    D+M+  G  P+       I ++N +V G  K    R A ++ 
Sbjct: 457 MILEHCKKGAIEDAKRVYDQMIDEGGIPS-------ILVYNCLVHGFSKQGNVREAVELM 509

Query: 396 LSM-RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
             M  N    + S T++++IT FC++G +  + ++V+++   GC+P+  T+S ++  L  
Sbjct: 510 NEMIANNCFPIPS-TFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPLIDVLCR 568

Query: 455 RRKMRQAAELLLLELMNKCVEAEVDIQN 482
              +++A + + +++++K +  ++ I N
Sbjct: 569 NGDLQKAMQ-VFMQMVDKGILPDLFIWN 595



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 193/421 (45%), Gaps = 17/421 (4%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   +   ++ ++  L    +   A +L++ + ++  D+T +I +S   GY +    +
Sbjct: 203 SRGVAPNTVVYNTLLHALCRNGKVGRARNLMNEM-EDPNDVTFNILIS---GYCKEGNSV 258

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+ + +K    G  P   S   VL IL    +   A      +  +G    V + N LI
Sbjct: 259 QALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRTMEAAEVLERVESMGGLLDVVAYNTLI 318

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K  C  +G +       ++M N+GC P+  TY  LI+G    G +  A +LF +M+T   
Sbjct: 319 KGFC-GAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGMLDLALDLFNDMKTDGI 377

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS--KGVEPNVFTYSSLMDGLCKGGCSSQA 280
               VT+ +LI GLC  + +E+   + E M    +G   ++  Y+S++ GL K     ++
Sbjct: 378 KWNFVTFDTLIRGLCSEERIEDGFSILELMEESKEGSRGHISPYNSIIYGLLKKNGFDES 437

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            E L  M      P  V  S ++   CK+G +++A  + D+M  +G  P   +Y  ++  
Sbjct: 438 AEFLTKM--GNLFPRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHG 495

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           F   G  +EA   ++EM+     P   T+       N V+ G C+      A ++   + 
Sbjct: 496 FSKQGNVREAVELMNEMIANNCFPIPSTF-------NAVITGFCRQGKVESALKLVEDIT 548

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            R    ++ TYS LI   C+ GD+ K+ ++  ++V  G LPD   W++++ +L   R   
Sbjct: 549 ARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGILPDLFIWNSLLLSLSQERHFS 608

Query: 460 Q 460
           +
Sbjct: 609 K 609



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 164/348 (47%), Gaps = 8/348 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E +  +ALV+ + +   ++ GF  D  + + ++  L +A +   A ++L+RV      + 
Sbjct: 254 EGNSVQALVLLEKS---FSMGFVPDVVSVTKVLEILCNAGRTMEAAEVLERVESMGGLLD 310

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++ +G+    +    +    +M+  GC P   +Y  +++   E   L LA   + 
Sbjct: 311 VVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGMLDLALDLFN 370

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR--EMPNRGCTPDSYTYGTLINGLC 202
            M+  GI+    + + LI+ LC      D  F I    E    G       Y ++I GL 
Sbjct: 371 DMKTDGIKWNFVTFDTLIRGLCSEERIEDG-FSILELMEESKEGSRGHISPYNSIIYGLL 429

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           +     E+ E   +M      P  V  + +I   C+  ++E+A R++++M  +G  P++ 
Sbjct: 430 KKNGFDESAEFLTKMGN--LFPRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSIL 487

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
            Y+ L+ G  K G   +A+EL+  MI+    P   T++ ++ G C++GK++ A+++++ +
Sbjct: 488 VYNCLVHGFSKQGNVREAVELMNEMIANNCFPIPSTFNAVITGFCRQGKVESALKLVEDI 547

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
             +G  P+   Y  +I   C  G  Q+A     +MV  GI P+   W+
Sbjct: 548 TARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGILPDLFIWN 595



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 1/144 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA RV+D+M + G  P+   Y  ++    ++  ++ A      M      P  ++ N +I
Sbjct: 469 DAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEMIANNCFPIPSTFNAVI 528

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+  G +++A K+  ++  RGC P++ TY  LI+ LCR G + +A ++F +M  K  
Sbjct: 529 TGFCR-QGKVESALKLVEDITARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGI 587

Query: 223 SPTVVTYTSLINGLCQSKSVEEAM 246
            P +  + SL+  L Q +   + M
Sbjct: 588 LPDLFIWNSLLLSLSQERHFSKNM 611


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 224/432 (51%), Gaps = 25/432 (5%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRV-------NKEKCDITEDIFLSICRGYGRVHRP 101
           D +TF+ ++  L        +  LL +V       NK  C+I       +C G GR+   
Sbjct: 114 DVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIW---IRGLCEG-GRLE-- 167

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A+ + + M  +   P   +Y T++  L ++++++ A ++ R M   G  P   + N +
Sbjct: 168 -EAVALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTI 225

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK    +  A ++ ++   +G  PD  TY +LINGLC  G +  A ELF E + K 
Sbjct: 226 IDGYCKRD-MLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKD 284

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P +V Y SL+ GLC+   +  A+++  EM   G  P+++TY+ +++GLCK G  S A 
Sbjct: 285 LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAA 344

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            ++   I K + P++ T++T+++G CK  KL  A+++++RM + G+ PDA  Y  +++  
Sbjct: 345 VVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGL 404

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C  GK +E     +EM+L G  PN +T+       N +++  CK +    A  V + M  
Sbjct: 405 CKAGKAKEVNETFEEMILKGCRPNAITY-------NILIENFCKINQLEEASGVIVRMSQ 457

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +  D++++++LI  FC+ GD+  +  +  +L   G      T++ ++ A   +  M Q
Sbjct: 458 DGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNM-Q 516

Query: 461 AAELLLLELMNK 472
            AE +  E+++K
Sbjct: 517 MAEKIFGEMISK 528



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 218/472 (46%), Gaps = 42/472 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T ++ I       +   A  LL  + +  CD+    + ++ RG        DA
Sbjct: 40  GVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDA 99

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FD+M      P   ++  VL  L ++  +  +      + + G+     + N+ I+ 
Sbjct: 100 RHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRG 159

Query: 165 LCKNS---------GTMDA------------------------AFKIFREMPNRGCTPDS 191
           LC+            +MDA                        A +  R M N+GC PD 
Sbjct: 160 LCEGGRLEEAVALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDD 219

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           +TY T+I+G C+   + EA EL K+   K   P  VTY SLINGLC    VE A+ LF E
Sbjct: 220 FTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNE 279

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
            ++K ++P++  Y+SL+ GLC+ G    A++++  M+     P+I TY+ ++NGLCK G 
Sbjct: 280 AQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGN 339

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           + +A  +++   ++G  PD   +  +I  +C   K   A   ++ M + GI P+ +T+  
Sbjct: 340 ISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITY-- 397

Query: 372 HIRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                N+V+ GLCK    +   + +  M  +    +++TY+ LI  FCK   + +++ ++
Sbjct: 398 -----NSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVI 452

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
             +  DG +PD  +++ ++     R      A LL  +L  K   A  D  N
Sbjct: 453 VRMSQDGLVPDTISFNTLIHGFC-RNGDLDGAYLLFQKLDEKGYSATADTFN 503



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 209/431 (48%), Gaps = 7/431 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ ++  L   ++ + A   L R+  + C   +  + +I  GY +     +A  + 
Sbjct: 183 DVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELL 242

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
                 G  P   +Y +++  L  E  ++ A   +   +   ++P +   N L+K LC+ 
Sbjct: 243 KDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQ 302

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A ++  EM   GC PD +TY  +INGLC++G I +A  +  +   K   P V T
Sbjct: 303 -GLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 361

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           + ++I+G C+   ++ A++L E M   G+ P+  TY+S+++GLCK G + +  E  + MI
Sbjct: 362 FNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMI 421

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K  RPN +TY+ L+   CK  +L+EA  ++ RM   GL PD   +  +I  FC  G   
Sbjct: 422 LKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLD 481

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL 408
            A     ++   G +    T+++ I  +++      K +   A +++  M ++    D  
Sbjct: 482 GAYLLFQKLDEKGYSATADTFNILIGAYSS------KLNMQMAEKIFGEMISKGYKPDLY 535

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY  L+   CK  ++ ++   + E+V  G +P   T+  V+ +L    ++ +A  ++ + 
Sbjct: 536 TYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIM 595

Query: 469 LMNKCVEAEVD 479
           +    V   VD
Sbjct: 596 VRMGVVPEVVD 606



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 147/326 (45%), Gaps = 1/326 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  T+  +I+ L +      A +L +    +       ++ S+ +G  R    L A
Sbjct: 249 GFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHA 308

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           ++V ++M E GC P   +Y  V+  L +   +  A          G  P V + N +I  
Sbjct: 309 LQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDG 368

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK    +D+A ++   M   G  PD+ TY +++NGLC+ GK  E  E F+EM  K C P
Sbjct: 369 YCKRL-KLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRP 427

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +TY  LI   C+   +EEA  +   M   G+ P+  ++++L+ G C+ G    A  L 
Sbjct: 428 NAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLF 487

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           Q +  K +     T++ L+     +  +Q A +I   M  +G KPD   Y  ++   C  
Sbjct: 488 QKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKA 547

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWS 370
                A   L EMV  G  P+  T+ 
Sbjct: 548 ANVDRAYVHLAEMVSKGFVPSMATFG 573



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 165/355 (46%), Gaps = 43/355 (12%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   G  P   + N ++ AL  N+   D A K++  M + G  PD+ T+   I   C  G
Sbjct: 1   MDLFGCPPAAPAYNAIMDALV-NTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITG 59

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           + + A  L + +  + C    + Y +++ GL       +A  LF+EM  + V P+V T++
Sbjct: 60  RPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFN 119

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD----- 320
           +++  LC+ G   ++  LL  ++ +    N  T +  + GLC+ G+L+EAV +++     
Sbjct: 120 NVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY 179

Query: 321 -----------------------------RMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
                                        RM  QG  PD   Y  II  +C     QEA 
Sbjct: 180 IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEAT 239

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTY 410
             L + +  G  P+R+T+        +++ GLC + D  RA +++   + + +  D + Y
Sbjct: 240 ELLKDAIFKGFVPDRVTYC-------SLINGLCAEGDVERALELFNEAQAKDLKPDLVVY 292

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +SL+   C++G I  + ++++E+V DGC PD  T++ V+  L     +  AA ++
Sbjct: 293 NSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVM 347



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 160/353 (45%), Gaps = 4/353 (1%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           ++T   ++  + AE DV +AL +F+ A A+     + D   ++ ++  L        A  
Sbjct: 254 RVTYCSLINGLCAEGDVERALELFNEAQAK---DLKPDLVVYNSLVKGLCRQGLILHALQ 310

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           +++ + ++ C      +  +  G  ++    DA  V +     G  P   ++ T++    
Sbjct: 311 VMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYC 370

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +  +L  A +    M   GI P   + N ++  LCK +G      + F EM  +GC P++
Sbjct: 371 KRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCK-AGKAKEVNETFEEMILKGCRPNA 429

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  LI   C++ ++ EA  +   M      P  +++ +LI+G C++  ++ A  LF++
Sbjct: 430 ITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQK 489

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +  KG      T++ L+           A ++   MISK ++P++ TY  L++G CK   
Sbjct: 490 LDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAAN 549

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           +  A   L  M  +G  P    +G++++      +  EA   +  MV  G+ P
Sbjct: 550 VDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVP 602



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 129/271 (47%), Gaps = 4/271 (1%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +++ A V+ + A  +   G+  D  TF+ MI       +   A  L++R+          
Sbjct: 339 NISDAAVVMNDAIVK---GYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAI 395

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + S+  G  +  +  +    F++M   GC P   +Y  ++    + NQL+ A      M
Sbjct: 396 TYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRM 455

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            + G+ P   S N LI   C+N G +D A+ +F+++  +G +  + T+  LI        
Sbjct: 456 SQDGLVPDTISFNTLIHGFCRN-GDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLN 514

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A+++F EM +K   P + TY  L++G C++ +V+ A     EM SKG  P++ T+  
Sbjct: 515 MQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGR 574

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +++ L      S+A+ ++ +M+     P +V
Sbjct: 575 VLNSLAMNHRVSEAVAIIHIMVRMGVVPEVV 605


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 175/327 (53%), Gaps = 9/327 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRIAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M ++GLKPD   Y  +I   C  G    A      M+      +
Sbjct: 292 LCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            +       ++  ++ GLC+   +  A ++   M +  +  D+ TY+ +I  FCKKGD+ 
Sbjct: 352 DV-------VYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVW 404

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTA 451
           K ++++ E+  DG +P   T++ +M  
Sbjct: 405 KGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/268 (37%), Positives = 160/268 (59%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  +D A ++F EM  +G  P+S T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 221 GLCKES-KIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 340 RKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 427



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 201/429 (46%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A+
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRK-------------GKGSASAVFAAI 61

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
                   F  + T +S + V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 62  --------FETKGTQRSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKV 113

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 114 LEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAI 168

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKI 228

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 229 DDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 288

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D + AF+   
Sbjct: 289 IYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYT-------TLIDGCCKDGDLDTAFEHRK 341

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +  +D + Y++LI+  C++G    + +++ E++  G  PD  T++ ++     + 
Sbjct: 342 RMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKG 401

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 402 DVWKGSKLL 410



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 146/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++  +PD  TY TLI GLC+ G + +A  L  EM  K   P  +TYT+L
Sbjct: 264 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  +    +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 324 IDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 186/351 (52%), Gaps = 9/351 (2%)

Query: 116  CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
            C   P  +  ++ + ++E  +  A   +  +  +G +P V + N+++ ++ K+  T +  
Sbjct: 910  CNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRT-ELV 968

Query: 176  FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            + +FREM ++G  P+  T+  LINGLC  G + +A  L K+ME     PT+VTY +L+N 
Sbjct: 969  WSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNW 1028

Query: 236  LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
             C+    + A+ L + M  KG+E +V TY+  +D LC    S++A  LL+ M  +   PN
Sbjct: 1029 YCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPN 1088

Query: 296  IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
             VTY+TL+NG  KEGK+  A ++ + M    L P+   Y  +I   C +G ++EA   LD
Sbjct: 1089 EVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLD 1148

Query: 356  EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLI 414
             M   G+  N +T+        T++ GLCK +    A ++   MR   + V  + Y+ LI
Sbjct: 1149 HMEAAGLRLNEVTYG-------TLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLI 1201

Query: 415  TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
               CK G + ++ ++V  +  DG  PD  T+S+++        ++ A E++
Sbjct: 1202 DGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEII 1252



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 209/422 (49%), Gaps = 9/422 (2%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
            G   D  T+++ I  L + ++   A  LL ++ KE     E  + ++  G+ +  +   A
Sbjct: 1049 GIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVA 1108

Query: 105  MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +VF++M +F   P   +Y  ++         + A R   HM   G++    +   L+  
Sbjct: 1109 AQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNG 1168

Query: 165  LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            LCK+    + A ++   M           Y  LI+GLC+ G + EA +L   M     +P
Sbjct: 1169 LCKHE-KFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNP 1227

Query: 225  TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             V+TY+SLING C+  +++ A  +   M   G+  N   YS+L+   C+ G  ++AM++ 
Sbjct: 1228 DVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVY 1287

Query: 285  QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +M    H  +  T + L++ LC++GKL EA + L  M   GL P++  Y  II+ +  I
Sbjct: 1288 AVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSI 1347

Query: 345  GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSI 403
            G    A +F D+M+  G  P+  T+        ++++GLCK       + +L+ +     
Sbjct: 1348 GDPLNAFSFFDDMIKCGQHPSFFTYG-------SLLKGLCKGGNLVEAKKFLNRLHYIPG 1400

Query: 404  SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            +VDS+ Y++L+   CK G++H++  + D++V +  LPD  T+S+++T L  + K   A  
Sbjct: 1401 AVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVC 1460

Query: 464  LL 465
            L 
Sbjct: 1461 LF 1462



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 189/385 (49%), Gaps = 9/385 (2%)

Query: 81   CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
            C+    +F  + R Y +      A+  F+ +   G +P+  +   +LA +V++ + +L +
Sbjct: 910  CNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVW 969

Query: 141  RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
              +R M + GI P V + N+LI  LC   G +  A  + ++M   G  P   TY TL+N 
Sbjct: 970  SLFREMSDKGICPNVGTFNILINGLCV-EGNLKKAGNLLKQMEENGFVPTIVTYNTLLNW 1028

Query: 201  LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
             C+ G+   A EL   M  K     V TY   I+ LC +    +A  L ++MR + + PN
Sbjct: 1029 YCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPN 1088

Query: 261  VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
              TY++L++G  K G    A ++   M      PN VTY+ L+ G C  G  +EA+ +LD
Sbjct: 1089 EVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLD 1148

Query: 321  RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
             M+  GL+ +   YG +++  C   K++ A   L+ M +  +    + +++       ++
Sbjct: 1149 HMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTV-------LI 1201

Query: 381  QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             GLCK    + A Q+  +M    ++ D +TYSSLI  FC+ G+I  +  I+  +   G +
Sbjct: 1202 DGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLV 1261

Query: 440  PDEGTWSAVMTALWDRRKMRQAAEL 464
             ++  +S ++        + +A ++
Sbjct: 1262 LNKIIYSTLIYNFCQHGNVTEAMKV 1286



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 213/510 (41%), Gaps = 81/510 (15%)

Query: 27   DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---------- 76
            D  +AL + D   A    G R +  T+  +++ L    +F  A+ LL+R+          
Sbjct: 1139 DFEEALRLLDHMEAA---GLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHI 1195

Query: 77   -----------------------NKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKM 111
                                   N  K  +  D+  + S+  G+ RV     A  +  +M
Sbjct: 1196 AYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM 1255

Query: 112  KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---- 167
               G       Y T++    +   +  A + Y  M   G      + NVL+ +LC+    
Sbjct: 1256 YRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKL 1315

Query: 168  -----------------NSGTMDA-------------AFKIFREMPNRGCTPDSYTYGTL 197
                             NS T D              AF  F +M   G  P  +TYG+L
Sbjct: 1316 GEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSL 1375

Query: 198  INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
            + GLC+ G + EAK+    +     +   V Y +L+   C+S ++ EA+ LF++M    V
Sbjct: 1376 LKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNV 1435

Query: 258  EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR-PNIVTYSTLLNGLCKEGKLQEAV 316
             P+ +TYSSL+ GLC+ G +  A+ L    + +    PN V Y+ L++GL K G  + A 
Sbjct: 1436 LPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAF 1495

Query: 317  EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
               + M  +G  PD   +  II      G+  +A +F   M   G+ PN  T+       
Sbjct: 1496 YFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATY------- 1548

Query: 377  NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            N ++ G  K     R   +Y +M    I  D LT+ SLI    K G      +++ ++++
Sbjct: 1549 NILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIM 1608

Query: 436  DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +G L D+ T++ ++    +  KMR+A +L+
Sbjct: 1609 EGTLADQFTFNILINKYSESGKMRKAFDLV 1638



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 201/467 (43%), Gaps = 53/467 (11%)

Query: 44   NGFRHDNSTFSLMISKLVSANQFRPAEDLL---DRVNKEKCDITEDIFLSICRGYGRVHR 100
            NG   D+ T ++++S L    +   AE  L    R+      IT D    I  GYG +  
Sbjct: 1293 NGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYD---CIINGYGSIGD 1349

Query: 101  PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            PL+A   FD M + G  P+  +Y ++L  L +   L  A +F   +  I         N 
Sbjct: 1350 PLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNT 1409

Query: 161  LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF-KEMET 219
            L+   CK SG +  A  +F +M      PDSYTY +L+ GLCR GK   A  LF   M  
Sbjct: 1410 LLAETCK-SGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGR 1468

Query: 220  KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG----------------------- 256
                P  V YT L++GL ++   + A   FEEM  KG                       
Sbjct: 1469 GTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMK 1528

Query: 257  ------------VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
                        V PN+ TY+ L+ G  K     + + L   M+ +   P+ +T+ +L+ 
Sbjct: 1529 ANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLIL 1588

Query: 305  GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
            GL K G     V++L +M ++G   D   +  +I+ + + GK ++A + ++ M   G+ P
Sbjct: 1589 GLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFP 1648

Query: 365  NRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDI 423
            +R T+       N +  GL K    R   V L  M    +      Y +LI   C+ GDI
Sbjct: 1649 DRDTY-------NHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDI 1701

Query: 424  HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
              + ++ DE+   G    E   SA++  L    K   A  +L+L+ M
Sbjct: 1702 QGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDA--MLVLDHM 1746



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 102/461 (22%), Positives = 199/461 (43%), Gaps = 45/461 (9%)

Query: 42   YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
            Y +G   D  T+S +I+        + A++++ R+ +    + + I+ ++   + +    
Sbjct: 1221 YKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNV 1280

Query: 102  LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             +AM+V+  M   G      +   +++ L  + +L  A +F  HM  IG+ P   + + +
Sbjct: 1281 TEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCI 1340

Query: 162  IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE--------- 212
            I         ++A F  F +M   G  P  +TYG+L+ GLC+ G + EAK+         
Sbjct: 1341 INGYGSIGDPLNA-FSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIP 1399

Query: 213  --------------------------LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
                                      LF +M      P   TY+SL+ GLC+      A+
Sbjct: 1400 GAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAV 1459

Query: 247  RLFEEMRSKG-VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF     +G + PN   Y+ L+DGL K G    A    + M+ K   P+ V ++ +++ 
Sbjct: 1460 CLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDS 1519

Query: 306  LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
              + G++ +A +    M+  G+ P+   Y  ++  F          +    M+  GI P+
Sbjct: 1520 CSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPD 1579

Query: 366  RLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            +LT+       ++++ GL K+  P+   ++   M       D  T++ LI  + + G + 
Sbjct: 1580 KLTF-------HSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMR 1632

Query: 425  KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            K+  +V+ +   G  PD  T++ +   L  +   R++  +L
Sbjct: 1633 KAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVL 1673



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 4/293 (1%)

Query: 93   RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ 152
             G+ +    L  + ++  M   G  P   ++ +++  L +     L  +    M   G  
Sbjct: 1553 HGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTL 1612

Query: 153  PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
                + N+LI    + SG M  AF +   M   G  PD  TY  + NGL +     E+  
Sbjct: 1613 ADQFTFNILINKYSE-SGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTV 1671

Query: 213  LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            +  EM      P    Y +LING+C+   ++ A +L +EM + G   +    S+++ GL 
Sbjct: 1672 VLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLL 1731

Query: 273  KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
              G +  AM +L  M+  R  P I T++TL++  C++ K+ EA+++   M+L GLK D  
Sbjct: 1732 HCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVV 1791

Query: 333  LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL---HIRIHNTVVQG 382
             Y  +I   C  G    A    +EM    + PN  T+++    I   N ++QG
Sbjct: 1792 AYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQG 1844



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 164/380 (43%), Gaps = 32/380 (8%)

Query: 88   FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
            F S+  G  +   P   +++  KM   G      ++  ++    E  +++ AF     M 
Sbjct: 1583 FHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMN 1642

Query: 148  EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             +G+ P   + N +   L K S   ++   +  EM   G  P    Y TLING+CR+G I
Sbjct: 1643 TLGVFPDRDTYNHIFNGLNKKSAFRESTV-VLHEMLENGVIPKHAQYITLINGMCRVGDI 1701

Query: 208  YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
              A +L  EME        V  ++++ GL      E+AM + + M    + P + T+++L
Sbjct: 1702 QGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTL 1761

Query: 268  MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
            M   C+    ++A++L  +M     + ++V Y+ L+ G+C  G    A E+ + M+ + L
Sbjct: 1762 MHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDL 1821

Query: 328  KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW---SLHIRIHNTVVQGLC 384
             P+   Y  ++          +    L ++   G+    ++W   + H+    TV  G  
Sbjct: 1822 CPNITTYAVLVDAISAANNLIQGEKLLTDLQERGL----ISWGGSTQHLDKELTVAMG-- 1875

Query: 385  KTDPNRAFQVYLSMRNRS--------ISVDSLTYSSL-ITCFC--KKGDI-------HKS 426
            K +  R F    +    +        I + S+ +  L + CFC  K+  I       +  
Sbjct: 1876 KLNYIRCFYPTTTEWTITTVTPWCSIIFIQSINWKVLPMRCFCDLKQAVINELVIFFYAE 1935

Query: 427  ARIVDELV----LDGCLPDE 442
             ++++ELV     +G +PDE
Sbjct: 1936 PKLINELVPLLTYEGAVPDE 1955



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 1/236 (0%)

Query: 49   DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
            D  TF+++I+K   + + R A DL++ +N        D +  I  G  +     ++  V 
Sbjct: 1614 DQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVL 1673

Query: 109  DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             +M E G  P    YIT++  +     ++ AF+    M  +G      + + +++ L   
Sbjct: 1674 HEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHC 1733

Query: 169  SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
              T DA   +   M      P   T+ TL++  CR  KI EA +L   ME       VV 
Sbjct: 1734 GKTEDAML-VLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVA 1792

Query: 229  YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            Y  LI G+C +     A  L+EEMR + + PN+ TY+ L+D +       Q  +LL
Sbjct: 1793 YNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLL 1848


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 223/455 (49%), Gaps = 45/455 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G   D+ T++ MI  L   N+   A ++ +++ + +       + ++  GYG   +  
Sbjct: 296 SHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFD 355

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  + ++ K  GC P+  +Y  +L  L ++ +L  A R +  M++    P +++ NVLI
Sbjct: 356 EAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKK-DAAPNLSTYNVLI 414

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +G ++AAFK+   M   G  P+  T   +I+ LC+  K+ EA  +F+ M  K C
Sbjct: 415 DMLCK-AGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKIC 473

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL--------------- 267
           SP  VT+ SLI+GL +   V++A RL+E+M      PN   Y+SL               
Sbjct: 474 SPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHK 533

Query: 268 --------------------MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
                               MD + K G + +   L + + S+   P++++YS L++GL 
Sbjct: 534 IFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLV 593

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K G  +E  E+   MK QG   D   Y   I  FC  GK  +A   L+EM   G  P  +
Sbjct: 594 KAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVV 653

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+        +V+ GL K D  + A+ ++   ++  + ++ + YSSLI  F K G I ++
Sbjct: 654 TYG-------SVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEA 706

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             I++EL+  G  P+  TW+ ++ AL    ++ +A
Sbjct: 707 YLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEA 741



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 211/423 (49%), Gaps = 9/423 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T ++MI +L  A +   A  + + +N + C   E  F S+  G G+  R  DA R++++M
Sbjct: 444 TVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQM 503

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            +    P    Y +++    +  + +   + ++ M   G  P +  LN  +  + K +G 
Sbjct: 504 LDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFK-AGE 562

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
                 +F E+ +RG  PD  +Y  LI+GL + G   E  ELF  M+ + C      Y +
Sbjct: 563 TGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNT 622

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            I+G C+S  V +A +L EEM++KG +P V TY S++DGL K     +A  L +   S  
Sbjct: 623 FIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNG 682

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              N+V YS+L++G  K G++ EA  I++ +  +GL P+   +  ++       +  EA 
Sbjct: 683 LELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEAL 742

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
                M     TPN +T+S+       ++ GLC+    N+AF  +  M+ + +  +++TY
Sbjct: 743 VCFQNMKNLKGTPNHITYSI-------LINGLCRVRKFNKAFVFWQEMQKQGLKPNTITY 795

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +++I    K G+I +++ + +    +G +PD  +++A++  L   R+  +A ++     M
Sbjct: 796 TTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRM 855

Query: 471 NKC 473
             C
Sbjct: 856 KGC 858



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 210/455 (46%), Gaps = 41/455 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG-YGRVHRPLD 103
           G+      F+ +I       +   A  LLD + K  C   + +  ++C   +G+  +   
Sbjct: 228 GYEVSVHLFTTVIRVFAREGRLDAALSLLDEM-KSNCLHADIVLYNVCIDCFGKAGKVDM 286

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A + F ++K  G  P   +Y +++ +L + N+L  A   +  M +    PC  + N +I 
Sbjct: 287 AWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIM 346

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
               ++G  D A+ +      RGC P    Y  ++  L + G++ EA   F+EM+  A +
Sbjct: 347 GY-GSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-A 404

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P + TY  LI+ LC++  VE A ++ + M+  G+ PNV T + ++D LCK     +A  +
Sbjct: 405 PNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSI 464

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M  K   P+ VT+ +L++GL K+G++ +A  + ++M      P+A +Y  +I  F  
Sbjct: 465 FEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFK 524

Query: 344 IGKYQEAANFLDEMVLGGITPN-RL--------------------------------TWS 370
            G+ ++      EM+  G +P+ RL                                  S
Sbjct: 525 CGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMS 584

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
             I IH  V  G  +      ++++ +M+ +   +D+  Y++ I  FCK G ++K+ +++
Sbjct: 585 YSILIHGLVKAGFAR----ETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLL 640

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +E+   G  P   T+ +V+  L    ++ +A  L 
Sbjct: 641 EEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLF 675



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 208/470 (44%), Gaps = 43/470 (9%)

Query: 18  VLQLIRAEKDVNKALVIF-------DSATAEYA--------------------------N 44
           V+ ++R  KDVN+A+  F       D A    A                           
Sbjct: 98  VIGVLRRAKDVNQAISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIA 157

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF     T   +I   + +N+ R   DL+  + K K       + ++      V      
Sbjct: 158 GFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIM 217

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+E G E +   + TV+ +   E +L  A      M+   +   +   NV I  
Sbjct: 218 LTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDC 277

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K +G +D A+K F E+ + G  PD  TY ++I  LC+  ++ EA E+F++ME     P
Sbjct: 278 FGK-AGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVP 336

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
               Y ++I G   +   +EA  L E  +++G  P+V  Y+ ++  L K G   +A+   
Sbjct: 337 CAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTF 396

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   PN+ TY+ L++ LCK G+++ A ++ D MK  GL P+      +I   C  
Sbjct: 397 EEM-KKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKA 455

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            K  EA +  + M     +P+ +T+        +++ GL K    + A+++Y  M +   
Sbjct: 456 KKLDEACSIFEGMNHKICSPDEVTFC-------SLIDGLGKQGRVDDAYRLYEQMLDSDK 508

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
             +++ Y+SLI  F K G      +I  E++  GC PD    +A M  ++
Sbjct: 509 IPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVF 558



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 211/468 (45%), Gaps = 12/468 (2%)

Query: 7   FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF 66
           F  STK     +L  I++    NK    FD         FR   S ++ +I  L S  + 
Sbjct: 159 FGPSTKTCIELILSCIKS----NKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQES 214

Query: 67  RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
                L  ++ +   +++  +F ++ R + R  R   A+ + D+MK          Y   
Sbjct: 215 DIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVC 274

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           +    +  ++ +A++F+  ++  G+ P   +   +I  LCK +  +D A +IF +M    
Sbjct: 275 IDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGN-RLDEAVEIFEQMEQNR 333

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             P +Y Y T+I G    GK  EA  L +  + + C P+V+ Y  ++  L +   + EA+
Sbjct: 334 NVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEAL 393

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
           R FEEM+ K   PN+ TY+ L+D LCK G    A ++   M      PN++T + +++ L
Sbjct: 394 RTFEEMK-KDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRL 452

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CK  KL EA  I + M  +   PD   +  +I      G+  +A    ++M+     PN 
Sbjct: 453 CKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNA 512

Query: 367 LTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           + ++  I+   +  +   K D ++ F+    M +R  S D    ++ + C  K G+  K 
Sbjct: 513 VVYTSLIK---SFFKCGRKEDGHKIFK---EMIHRGCSPDLRLLNAYMDCVFKAGETGKG 566

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             + +E+   G +PD  ++S ++  L      R+  EL        CV
Sbjct: 567 RALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCV 614



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 171/360 (47%), Gaps = 10/360 (2%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           ++  +M   G  P+ K+ I ++   ++ N+L+  F   + MR+   +P  ++   LI AL
Sbjct: 149 QILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGAL 208

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
                + D    +F +M   G     + + T+I    R G++  A  L  EM++      
Sbjct: 209 SSVQES-DIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHAD 267

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           +V Y   I+   ++  V+ A + F E++S G+ P+  TY+S++  LCKG    +A+E+ +
Sbjct: 268 IVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFE 327

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M   R+ P    Y+T++ G    GK  EA  +L+R K +G  P    Y  I++C    G
Sbjct: 328 QMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKG 387

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404
           +  EA    +EM      PN  T+       N ++  LCK  +   AF+V  +M+   + 
Sbjct: 388 RLGEALRTFEEMKKDA-APNLSTY-------NVLIDMLCKAGEVEAAFKVRDAMKEAGLF 439

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            + +T + +I   CK   + ++  I + +    C PDE T+ +++  L  + ++  A  L
Sbjct: 440 PNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRL 499



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 137/306 (44%), Gaps = 15/306 (4%)

Query: 161 LIKALCKNSGTMDAAFKIFR---EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L+  + + +  ++ A   FR      ++   P++Y   +L+  + +  K    +++  EM
Sbjct: 97  LVIGVLRRAKDVNQAISYFRWTERKTDQALCPEAYD--SLLLVMAKNVKFDYFEQILGEM 154

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+  T   LI    +S  + E   L + MR     P    Y++L+  L     S
Sbjct: 155 SIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQES 214

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
              + L   M    +  ++  ++T++    +EG+L  A+ +LD MK   L  D  LY   
Sbjct: 215 DIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVC 274

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I CF   GK   A  F  E+   G+ P+ +T++  I +       LCK +  + A +++ 
Sbjct: 275 IDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGV-------LCKGNRLDEAVEIFE 327

Query: 397 SM-RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            M +NR++   +  Y+++I  +   G   ++  +++     GC+P    ++ ++T L  +
Sbjct: 328 QMEQNRNVPC-AYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKK 386

Query: 456 RKMRQA 461
            ++ +A
Sbjct: 387 GRLGEA 392


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 176/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRLAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 292 LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 352 EVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPDARTYTMIINEFCKKG 401

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG +P   T++ +M  
Sbjct: 402 DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/268 (37%), Positives = 159/268 (59%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 221 GLCKES-KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 340 RKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 427



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 205/431 (47%), Gaps = 42/431 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           + FRH   ++  MI  L +      A+ L+  V   K             G G       
Sbjct: 13  SNFRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRK-------------GKG------S 53

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCV 155
           A  VF  + E     T +S I V + L+    E   L+ A   YR  RE    + I  C 
Sbjct: 54  ASAVFAAILE--TRGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCR 111

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
             L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F 
Sbjct: 112 KVLEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFD 166

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            +      P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 226

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
               A EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y 
Sbjct: 227 KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYN 286

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQV 394
            +I   C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D + AF+ 
Sbjct: 287 TLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYT-------TLIDGCCKEGDLDSAFEH 339

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M   +I +D + Y++LI+  C++G    + +++ E++  G  PD  T++ ++     
Sbjct: 340 RKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 455 RRKMRQAAELL 465
           +  + + ++LL
Sbjct: 400 KGDVWKGSKLL 410



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 147/287 (51%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++  +PD  TY TLI GLC+ G + +A  L  EM  K   P  +TYT+L
Sbjct: 264 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 324 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 197/371 (53%), Gaps = 12/371 (3%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           GR+    +A ++ D+M+     P   SY T++   +E +++  AF+    M E G++P  
Sbjct: 327 GRIE---EAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNA 383

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N+++K  CK  G MD A     +M   G +PD  TY TLING C+ G + EA     
Sbjct: 384 VTHNIMVKWYCK-EGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMD 442

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM  K      VT  +++  LC+ K +EEA +L    R +G   +  +Y +L+ G  K G
Sbjct: 443 EMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDG 502

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A++L   M  K   P+ VTY+ ++ GLC+ GK ++A+  L+ +   GL PD   Y 
Sbjct: 503 NVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYN 562

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
            I+  +C  G  ++A  F ++MV     P+  T        N +++GLC      +A ++
Sbjct: 563 TILHGYCREGDVEKAFQFHNKMVENSFKPDVFTC-------NILLRGLCMEGMLEKALKL 615

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           + +  ++  ++D++TY++LIT  CK+G +  +  ++ E+      PD  T++A++TAL D
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTD 675

Query: 455 RRKMRQAAELL 465
             ++R+A E +
Sbjct: 676 SGRIREAEEFM 686



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 209/426 (49%), Gaps = 47/426 (11%)

Query: 82  DITEDIFLSICR--------------GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           D   D+ LSI R               Y +  +P  A ++F KMK     P   +  T+L
Sbjct: 118 DRRHDLHLSILRLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLL 177

Query: 128 AILV---EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
             LV     + +  +   +    ++GI P V + N++I   C  +   DA  +    M  
Sbjct: 178 NSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAV-EFLNVMGK 236

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
             C+PD+ TY T+++ LC+ G++ +A++L  +M+++   P   TY  L+ G C+   ++E
Sbjct: 237 YNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKE 296

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A  + E M    + P+V+TY+ L++GLC  G   +A +L   M + +  P++V+Y+TL+N
Sbjct: 297 AANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLIN 356

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G  +  K+ EA ++L+ M  +G+KP+A  +  ++  +C  GK  +A+N + +M   G +P
Sbjct: 357 GCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSP 416

Query: 365 NRLTWSLHIRIH----------------------------NTVVQGLCKTDP-NRAFQVY 395
           + +T++  I  +                            NT+++ LC+      A+++ 
Sbjct: 417 DCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLL 476

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            S R R   +D ++Y +LI  + K G++ ++ ++ DE+     +P   T++ ++  L   
Sbjct: 477 SSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQC 536

Query: 456 RKMRQA 461
            K  QA
Sbjct: 537 GKTEQA 542



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 190/415 (45%), Gaps = 23/415 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPL 102
           G + +  T ++M+       +   A + + ++  E+   + D   + ++  GY +     
Sbjct: 378 GVKPNAVTHNIMVKWYCKEGKMDDASNTITKM--EESGFSPDCVTYNTLINGYCKAGNMG 435

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A R  D+M     +    +  T+L  L  E +L+ A++     R+ G      S   LI
Sbjct: 436 EAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K+ G +D A K++ EM  +   P + TY  +I GLC+ GK  +A     E+     
Sbjct: 496 VGYFKD-GNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGL 554

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   TY ++++G C+   VE+A +   +M     +P+VFT + L+ GLC  G   +A++
Sbjct: 555 LPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALK 614

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L    +SK    + VTY+TL+  LCKEG+L +A  +L  M+ + L PD   Y  II+   
Sbjct: 615 LFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALT 674

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           D G+ +EA  F+ +M+  G  P ++   L +  + TVV                S  +  
Sbjct: 675 DSGRIREAEEFMSKMLEKGXLPXQV---LQLDXNETVVT---------------SETSEE 716

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
               S+ YS  I   C +G    + RI  E    G   D+ T+  +M  L  RRK
Sbjct: 717 SDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRRK 771



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 89/196 (45%), Gaps = 19/196 (9%)

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC- 342
           L + I +   P+     T +    + G+   A +I  +MK   L+P+      +++    
Sbjct: 123 LHLSILRLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVR 182

Query: 343 -----DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS 397
                 +   +EA N  D + LG I PN       +   N V+ G C  +  +    +L+
Sbjct: 183 YPSSHSVSFSREAFN--DAIKLG-IVPN-------VNTFNIVIYGYCLENKFKDAVEFLN 232

Query: 398 -MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   + S D++TY++++   CKKG +  +  ++ ++   G LP+  T++ ++       
Sbjct: 233 VMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMG 292

Query: 457 KMRQAAELLLLELMNK 472
            +++AA   ++ELM +
Sbjct: 293 WLKEAAN--VIELMTQ 306


>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/484 (27%), Positives = 237/484 (48%), Gaps = 41/484 (8%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   +  LI  +K  ++AL  F  A+      F H+ ST+  +I KL S  +F   +++L
Sbjct: 93  THQHIAHLILEQKSASQALQTFRWASN--LPNFIHNQSTYRALIHKLCSFRRFETVKEVL 150

Query: 74  DRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           D +         E IF++I RG GR       ++V D + +FG  P+ K + ++L +LV+
Sbjct: 151 DEMPSSIGSPPDESIFVTIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVK 210

Query: 133 ENQLKLAFRFYRH-MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           E+ + LA  FYR  M   G+     +  +L+K LC  +   DA FK+ + M +RG TP++
Sbjct: 211 ED-IDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTNRIGDA-FKLLQVMKSRGKTPNT 268

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
             Y T+I+ LC+ GK+  A+ L  EM      P+ VT+  LI+  CQ +++ +A+ L E+
Sbjct: 269 VIYNTMIHALCKNGKVGRARSLMNEM----VEPSDVTFNVLISAYCQEENLVQALVLLEK 324

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
             S G  P+V T + ++  LCK G  ++ +E+L+ + S     ++V Y+TL+ G C  GK
Sbjct: 325 SFSMGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGK 384

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
            +    +L  M+++G  P+   Y  + S +CD G    A +  ++M   GI  N +T+  
Sbjct: 385 AKVGHRVLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDT 444

Query: 372 HIR------------------------------IHNTVVQGLCKTDPNRAFQVYLSMRNR 401
            IR                               +N+++ GL K +       +L+ +  
Sbjct: 445 LIRGLCSGGRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLT-KME 503

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +   ++  S  I  FC +G I  + R+ D+++ +G +P    +  ++        +R+A
Sbjct: 504 KLFPRAVDRSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREA 563

Query: 462 AELL 465
            EL+
Sbjct: 564 FELI 567



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 210/430 (48%), Gaps = 25/430 (5%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLL----DRVNKEKCDITEDIFLSICRGYGRVH 99
           NG   D+ TF +++  L   N+   A  LL     R       I   +  ++C+  G+V 
Sbjct: 227 NGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKN-GKVG 285

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R   A  + ++M     EP+  ++  +++   +E  L  A         +G  P V +  
Sbjct: 286 R---ARSLMNEM----VEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTAT 338

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            ++  LCK +G +    ++   + + G   D   Y TLI G C LGK      + K+ME 
Sbjct: 339 KVVGILCK-AGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEI 397

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K C P V TY  L +G C S  ++ A+ LF +M++ G+  N  TY +L+ GLC GG    
Sbjct: 398 KGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMED 457

Query: 280 AMELLQMMISKRHRPN--IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             ++L++M   R      I  Y++++ GL K+ + +EA+E L +M  + L P A      
Sbjct: 458 GFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKM--EKLFPRAVDRSLR 515

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYL 396
           I  FC+ G   +A    D+M+  G  P+ L       ++  ++ G C+    R AF++  
Sbjct: 516 ILGFCNEGSIGDAKRVYDQMIKEGGVPSVL-------VYVCLIHGFCQDGNVREAFELIN 568

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M +      + T+++LI+ FC +G +  + ++++++V  GCLPD G++S ++ AL ++ 
Sbjct: 569 EMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKG 628

Query: 457 KMRQAAELLL 466
             ++A  L L
Sbjct: 629 DFQKAVRLFL 638



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 169/348 (48%), Gaps = 8/348 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E+++ +ALV+ + +   ++ GF  D  T + ++  L  A +     ++L+RV      + 
Sbjct: 312 EENLVQALVLLEKS---FSMGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVD 368

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++ +G+  + +     RV   M+  GC P   +Y  + +   +   L  A   + 
Sbjct: 369 VVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFN 428

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRGCTPDSYT-YGTLINGLC 202
            M+  GI     + + LI+ LC + G M+  FKI   M  +RG      + Y ++I GL 
Sbjct: 429 DMKTDGINWNFMTYDTLIRGLC-SGGRMEDGFKILELMEESRGGAGGRISPYNSIIYGLY 487

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           +  +  EA E   +ME     P  V  +  I G C   S+ +A R++++M  +G  P+V 
Sbjct: 488 KKNQFEEALEFLTKMEK--LFPRAVDRSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVL 545

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
            Y  L+ G C+ G   +A EL+  M+   + P   T++ L++  C +GK+  A+++++ M
Sbjct: 546 VYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDM 605

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
             +G  PD G Y  ++   C+ G +Q+A     +MV   I P+  TW+
Sbjct: 606 VGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWN 653



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 9/203 (4%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNK---EKCDITEDIFLSICRGYGRVHRPLDAMRV 107
           S ++ +I  L   NQF  A + L ++ K      D +  I L  C   G +    DA RV
Sbjct: 477 SPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRI-LGFCN-EGSIG---DAKRV 531

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           +D+M + G  P+   Y+ ++    ++  ++ AF     M + G  P   + N LI A C 
Sbjct: 532 YDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFC- 590

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G + +A K+  +M  RGC PD  +Y  +++ LC  G   +A  LF +M  K   P   
Sbjct: 591 GQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYS 650

Query: 228 TYTSLINGLCQSKSVEEAMRLFE 250
           T+ S++  L Q     E   LF 
Sbjct: 651 TWNSMLLCLTQETVWLEGDNLFH 673


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 209/373 (56%), Gaps = 12/373 (3%)

Query: 102 LDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           +D M+ V+ +M E    P   +Y  ++    +   ++ A ++   + E G+ P   +   
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTS 258

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   C+    +D+AFK+F+EMP +GC  +   Y  LI+GLC   +I EA +LF +M+  
Sbjct: 259 LIMGYCQRKD-LDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDD 317

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C PTV TYT LI  LC S+   EA+ L +EM  KG++PN+ TY+ L+D LC      +A
Sbjct: 318 DCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKA 377

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  M+ K   PN++TY+ L+NG CK G +++A+++++ M+ + L+P+   Y ++I  
Sbjct: 378 RELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKG 437

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
           +C    ++ A   L++M+   + P+ +T+       N+++ G C++ + + A+++   M 
Sbjct: 438 YCKRNVHK-AMGVLNKMLERKVLPDVVTY-------NSLIDGQCRSGNFDSAYRLLSLMN 489

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +R +  D  TY+S+I   CK   + ++  + D L     +P+   ++A++       K+ 
Sbjct: 490 DRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVN 549

Query: 460 QAAELLLLELMNK 472
           + A L+L ++++K
Sbjct: 550 E-AHLMLEKMLSK 561



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 218/440 (49%), Gaps = 11/440 (2%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           KD++ A  +F     +   G R +   ++ +I  L    +   A DL  ++  + C  T 
Sbjct: 267 KDLDSAFKVFKEMPLK---GCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTV 323

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             +  + +      R  +A+ +  +M+E G +P   +Y  ++  L  + +L+ A      
Sbjct: 324 RTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQ 383

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E G+ P V + N LI   CK  G ++ A  +   M +R   P++ TY  LI G C+  
Sbjct: 384 MLEKGLMPNVITYNALINGYCKR-GMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN 442

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            +++A  +  +M  +   P VVTY SLI+G C+S + + A RL   M  +G+ P+ +TY+
Sbjct: 443 -VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYT 501

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           S++D LCK     +A +L   +  K   PN+V Y+ L++G CK GK+ EA  +L++M  +
Sbjct: 502 SMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSK 561

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
              P++  +  +I   C  GK +EA    ++MV   + P   T +  I IH  +  G   
Sbjct: 562 NCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDT--ILIHRLLKDG--- 616

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            D + A++ +  M +     D+ TY++ I  +C++G +  +  +V ++  +G  PD  T+
Sbjct: 617 -DFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTY 675

Query: 446 SAVMTALWDRRKMRQAAELL 465
           S+++    D  +   A  +L
Sbjct: 676 SSLIKGYGDLGRTNSAFVVL 695



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 190/384 (49%), Gaps = 10/384 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ M++          A   +  + +   D     + S+  GY +      A +VF +M
Sbjct: 220 TYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEM 279

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC     +Y  ++  L  E ++  A   +  M++    P V +  VLIKALC  S  
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALC-GSER 338

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A  + +EM  +G  P+ +TY  LI+ LC   K+ +A+EL  +M  K   P V+TY +
Sbjct: 339 KSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNA 398

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LING C+   +E+A+ + E M S+ + PN  TY+ L+ G CK     +AM +L  M+ ++
Sbjct: 399 LINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNV-HKAMGVLNKMLERK 457

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++VTY++L++G C+ G    A  +L  M  +GL PD   Y  +I   C   + +EA 
Sbjct: 458 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEAC 517

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           +  D +    + PN       + ++  ++ G CK    N A  +   M +++   +SLT+
Sbjct: 518 DLFDSLEQKDVIPN-------VVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTF 570

Query: 411 SSLITCFCKKGDIHKSARIVDELV 434
           ++LI   C  G + ++  + +++V
Sbjct: 571 NALIHGLCTDGKLKEATLLEEKMV 594



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++++I  L S  +   A +LL ++ ++        + ++  GY +     DA
Sbjct: 353 GIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDA 412

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + V + M+     P  ++Y  ++    + N  K A      M E  + P V + N LI  
Sbjct: 413 LDVVELMESRNLRPNTRTYNELIKGYCKRNVHK-AMGVLNKMLERKVLPDVVTYNSLIDG 471

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+ SG  D+A+++   M +RG  PD +TY ++I+ LC+  ++ EA +LF  +E K   P
Sbjct: 472 QCR-SGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIP 530

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV YT+LI+G C++  V EA  + E+M SK   PN  T+++L+ GLC  G   +A  L 
Sbjct: 531 NVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLE 590

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+    +P + T + L++ L K+G    A     +M   G KPDA  Y   I  +C  
Sbjct: 591 EKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCRE 650

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
           G+ Q+A + + +M   G++P+  T+S  I+ +  + +       N AF V   M +    
Sbjct: 651 GRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGR------TNSAFVVLKRMHDTGCE 704

Query: 405 VDSLTYSSLI 414
               T+ SLI
Sbjct: 705 PSQHTFLSLI 714



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 202/430 (46%), Gaps = 28/430 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ MI  L  + +   A DL D + ++       ++ ++  GY +  +  +A
Sbjct: 492 GLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEA 551

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + +KM    C P   ++  ++  L  + +LK A      M +I +QP V++  +LI  
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHR 611

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L K+ G  D A++ F++M + G  PD++TY T I   CR G++ +A+++  +M+    SP
Sbjct: 612 LLKD-GDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSP 670

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD-------GLCKGG-- 275
            + TY+SLI G         A  + + M   G EP+  T+ SL+        G  KGG  
Sbjct: 671 DLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEP 730

Query: 276 --CSSQAM-------ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL-Q 325
             C    M       ELL+ M+     PN  +Y  L+ G+C+ G L+ A ++ D M+  +
Sbjct: 731 GVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKE 790

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI-RIHNTVVQGLC 384
           G+ P   ++  ++SC C + K+ EAA  +D+M+  G  P   +  + I R++        
Sbjct: 791 GISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYK------- 843

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           K +  R   V+ ++       D L +  +I    K+G +     + + +  +GC     T
Sbjct: 844 KGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQT 903

Query: 445 WSAVMTALWD 454
           +S ++    D
Sbjct: 904 YSLLIEGPPD 913



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 151/311 (48%), Gaps = 27/311 (8%)

Query: 35  FDSATAEY----ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL- 89
           FD A   +    ++G + D  T++  I       + + AED++ ++ +    ++ D+F  
Sbjct: 618 FDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKEN--GVSPDLFTY 675

Query: 90  -SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
            S+ +GYG + R   A  V  +M + GCEP+  ++++++  L+E    K+          
Sbjct: 676 SSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVK--------- 726

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G +P V  ++ +++         D   ++  +M   G TP++ +Y  L+ G+C +G + 
Sbjct: 727 -GGEPGVCVMSNMME--------FDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLR 777

Query: 209 EAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            A+++F  M+ K   SP+ + + +L++  C+ +   EA ++ ++M   G  P + +   L
Sbjct: 778 VAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKIL 837

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +  L K G   +   + Q ++   +  + + +  +++G+ K+G ++   E+ + M+  G 
Sbjct: 838 ICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGC 897

Query: 328 KPDAGLYGKII 338
              +  Y  +I
Sbjct: 898 TFSSQTYSLLI 908



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 367 LTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           L + L I  +NT++  L +    +   QVY+ M    +  +  TY+ ++  +CK G++ +
Sbjct: 177 LKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEE 236

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           + + V  +V  G  PD  T+++++     R+ +  A ++     +  C   EV
Sbjct: 237 ANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEV 289


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 221/454 (48%), Gaps = 43/454 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D+ +++ MI  L  A +   AE+L  ++  E+       + ++  GYG   R  
Sbjct: 277 AQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFE 336

Query: 103 DAMRVFDKMKEFGC----------------------------------EPTPKSYITVLA 128
           DA ++ ++++E GC                                  EP   +Y  ++ 
Sbjct: 337 DAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIID 396

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
           +L    +++ A+R    M    + P + ++N+++  LCK +  ++ A+KIF     RGC 
Sbjct: 397 MLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK-ARKLEEAYKIFESASQRGCN 455

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD  TY +LI+GL + G++ EA  LF++M     +   V YTSLI         E+  ++
Sbjct: 456 PDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKI 515

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F+E+  +G +P++   ++ MD + K G   +   + + + S    P++ +YS L++GL K
Sbjct: 516 FKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTK 575

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G+ +E   I   MK QG   DA  Y  ++  FC  GK  +A   L+EM    + P   T
Sbjct: 576 AGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVAT 635

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +         +V GL K D  + A+ ++   +++ I ++ + YSSLI  F K G I ++ 
Sbjct: 636 Y-------GAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAY 688

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I++E++  G  P+  TW++++ AL    ++ +A
Sbjct: 689 LILEEMMKKGLTPNVYTWNSLLDALVKAEEINEA 722



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 217/438 (49%), Gaps = 12/438 (2%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           + + +A  IF+SA+     G   D  T+  +I  L    Q   A  L +++     +   
Sbjct: 437 RKLEEAYKIFESASQ---RGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANP 493

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            ++ S+ R +    R  D  ++F ++   GC+P      T +  + +  +++     +  
Sbjct: 494 VVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFED 553

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           +R  G  P V S ++LI  L K +G       IF  M  +G   D+  Y  +++G C+ G
Sbjct: 554 IRSYGFLPDVRSYSILIHGLTK-AGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSG 612

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+++A E+ +EM+ K   PTV TY ++++GL +   ++EA  LFEE +SKG+E NV  YS
Sbjct: 613 KVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYS 672

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           SL+DG  K G   +A  +L+ M+ K   PN+ T+++LL+ L K  ++ EA+     MK  
Sbjct: 673 SLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEM 732

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
              P+   Y  +I+  C + KY +A  F  +M   G+ PN +T++       T++ GL K
Sbjct: 733 KCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYT-------TMISGLAK 785

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             +   A+ ++   +      D+ ++++LI          ++ ++ +E  L GC  +  +
Sbjct: 786 VGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKS 845

Query: 445 WSAVMTALWDRRKMRQAA 462
             +++ AL     + QAA
Sbjct: 846 CISLLDALNKSECLEQAA 863



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 209/420 (49%), Gaps = 8/420 (1%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FR   S ++++I  L  A +   A +LL ++ +   ++   +F ++ R   R  +  DA+
Sbjct: 175 FRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADAL 234

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            + D++K    EP    Y   +    +   + +A++F+  ++  G++P   S   +I  L
Sbjct: 235 ALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVL 294

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK +G +  A ++F +M      P +Y Y T+I G    G+  +A +L + +  + C P+
Sbjct: 295 CK-AGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPS 353

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV++ S++  L + + V+EA+ LFE M+ K  EPN  TY+ ++D LC GG   +A  +L 
Sbjct: 354 VVSFNSILTCLGKKRKVDEALSLFEVMK-KDAEPNSSTYNIIIDMLCLGGRVEEAYRILD 412

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M      PN++T + +++ LCK  KL+EA +I +    +G  PD   Y  +I      G
Sbjct: 413 EMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKG 472

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
           +  EA    ++M+  G   N + ++  IR  N  + G  K D ++ F+    +  R    
Sbjct: 473 QVDEAYRLFEKMLDAGHNANPVVYTSLIR--NFFIHGR-KEDGHKIFK---ELIRRGCKP 526

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D    ++ + C  K G++ K   I +++   G LPD  ++S ++  L    + R+ + + 
Sbjct: 527 DLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIF 586



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/482 (23%), Positives = 236/482 (48%), Gaps = 44/482 (9%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           +L  +  ++ V++AL +F+    +       ++ST++++I  L    +   A  +LD + 
Sbjct: 360 ILTCLGKKRKVDEALSLFEVMKKDA----EPNSSTYNIIIDMLCLGGRVEEAYRILDEME 415

Query: 78  KEKCD---ITEDIFLS-ICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVE 132
                   +T +I +  +C+      R L+ A ++F+   + GC P   +Y +++  L +
Sbjct: 416 HASLFPNLLTVNIMVDRLCKA-----RKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGK 470

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           + Q+  A+R +  M + G          LI+    + G  +   KIF+E+  RGC PD  
Sbjct: 471 KGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH-GRKEDGHKIFKELIRRGCKPDLT 529

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
              T ++ + + G++ + + +F+++ +    P V +Y+ LI+GL ++    E   +F  M
Sbjct: 530 LLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM 589

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           + +G   +   Y++++DG CK G   +A E+L+ M  K  +P + TY  +++GL K  +L
Sbjct: 590 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRL 649

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS-- 370
            EA  + +  K +G++ +  LY  +I  F  +G+  EA   L+EM+  G+TPN  TW+  
Sbjct: 650 DEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 709

Query: 371 --------------------------LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
                                      +   ++ ++ GLC+    N+AF  +  M+ + +
Sbjct: 710 LDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGL 769

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             + +TY+++I+   K G+I  +  + +    +G +PD  +++A++  + +  +  +A +
Sbjct: 770 VPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQ 829

Query: 464 LL 465
           + 
Sbjct: 830 VF 831



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 177/376 (47%), Gaps = 44/376 (11%)

Query: 98  VHRPLDAM-RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +H  L A+ +V ++M   G     ++   + A LV   +L  A      MR +  +P  +
Sbjct: 121 LHHDLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFS 180

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +  VLI AL + +   + A ++ R+M   G     + + TL+  L R G++ +A  L  E
Sbjct: 181 AYTVLIGALAE-ARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDE 239

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           ++     P +V Y   I+   ++ +V+ A + F E++++G++P+  +Y+S++  LCK G 
Sbjct: 240 VKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGR 299

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG---------- 326
             +A EL   M ++R  P    Y+T++ G    G+ ++A ++L+R++ +G          
Sbjct: 300 LGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNS 359

Query: 327 ------------------------LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
                                    +P++  Y  II   C  G+ +EA   LDEM    +
Sbjct: 360 ILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASL 419

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            PN LT        N +V  LCK      A++++ S   R  + D +TY SLI    KKG
Sbjct: 420 FPNLLTV-------NIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKG 472

Query: 422 DIHKSARIVDELVLDG 437
            + ++ R+ ++++  G
Sbjct: 473 QVDEAYRLFEKMLDAG 488



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 110/286 (38%), Gaps = 78/286 (27%)

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L   L +++ +++A+     MR     P    Y+ L+  L +     +A+ELL+ M    
Sbjct: 150 LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 209

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           +   +  ++TL+  L +EG++ +A+ ++D +K   L+PD  LY   I CF   G    A 
Sbjct: 210 YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAW 269

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
            F  E+   G+ P                                         D ++Y+
Sbjct: 270 KFFHELKAQGLKP-----------------------------------------DDVSYT 288

Query: 412 SLITCFCKKGDIHKSA-----------------------------------RIVDELVLD 436
           S+I   CK G + ++                                    ++++ L   
Sbjct: 289 SMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRER 348

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           GC+P   ++++++T L  +RK+ +A  L L E+M K  E      N
Sbjct: 349 GCIPSVVSFNSILTCLGKKRKVDEA--LSLFEVMKKDAEPNSSTYN 392


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 217/433 (50%), Gaps = 15/433 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R    T+++MI  +        A  L + +           + S+  G+G+V R  D 
Sbjct: 125 GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDT 184

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +  F++MK+  CEP   +Y  ++    +  +L +   FYR M+  G++P V S + L+ A
Sbjct: 185 VCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 244

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G M  A K + +M   G  P+ YTY +LI+  C++G + +A  L  EM       
Sbjct: 245 FCK-EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEW 303

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+LI+GLC ++ ++EA  LF +M + GV PN+ +Y++L+ G  K     +A+ELL
Sbjct: 304 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 363

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +  +  +P+++ Y T + GLC   K++ A  +++ MK  G+K ++ +Y  ++  +   
Sbjct: 364 NELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 423

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR-S 402
           G   E  + LDEM    I    +T+ +       ++ GLCK    ++A   +  + N   
Sbjct: 424 GNPTEGLHLLDEMKELDIEVTVVTFCV-------LIDGLCKNKLVSKAVDYFNRISNDFG 476

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  ++  ++++I   CK   +  +  + +++V  G +PD   ++++M         +Q  
Sbjct: 477 LQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG-----NFKQGN 531

Query: 463 ELLLLELMNKCVE 475
            L  L L +K  E
Sbjct: 532 VLEALALRDKMAE 544



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 209/441 (47%), Gaps = 30/441 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDR--VNKEKCDITE---------------- 85
           NGF+H   ++ ++   L  A  +  A  +L    ++K  CD+ +                
Sbjct: 4   NGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFGVF 63

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           D   S+    G +    +A++ F KMK F   P  +S   +L    +  +     RF++ 
Sbjct: 64  DALFSVLIDLGMLE---EAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKD 120

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   G +P V + N++I  +CK  G ++AA  +F EM  RG  PD+ TY ++I+G  ++G
Sbjct: 121 MIGAGARPTVFTYNIMIDCMCK-EGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 179

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ +    F+EM+   C P V+TY +LIN  C+   +   +  + EM+  G++PNV +YS
Sbjct: 180 RLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYS 239

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+D  CK G   QA++    M      PN  TY++L++  CK G L +A  + + M   
Sbjct: 240 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQV 299

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G++ +   Y  +I   CD  + +EA     +M   G+ PN  ++       N ++ G  K
Sbjct: 300 GVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASY-------NALIHGFVK 352

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             + +RA ++   ++ R I  D L Y + I   C    I  +  +++E+   G   +   
Sbjct: 353 AKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI 412

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           ++ +M A +      +   LL
Sbjct: 413 YTTLMDAYFKSGNPTEGLHLL 433



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K V+KA+  F+  + ++  G + + + F+ MI  L   NQ   A  L +++ ++      
Sbjct: 459 KLVSKAVDYFNRISNDF--GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDR 516

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + S+  G  +    L+A+ + DKM E G +    +Y +++  L   NQL+ A  F   
Sbjct: 517 TAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEE 576

Query: 146 MREIGIQP 153
           M   GI P
Sbjct: 577 MIGEGIHP 584


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 176/327 (53%), Gaps = 9/327 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY+ + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN   +++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++   ++D M ++GLKPD   Y  +I   C  G    A     +M+   I  +
Sbjct: 292 LCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            + ++        ++ GLC+   +  A ++   M N  +  D+ TY+ +I  FCKKGD+ 
Sbjct: 352 EVAYT-------ALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVW 404

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTA 451
           K ++++ E+  DG +P   T++ +M  
Sbjct: 405 KGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 156/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+   + TLI+G C+ G++  A E++K+M +++  
Sbjct: 221 GLCKES-KMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++   L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 340 RKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 427



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 203/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLWEAKSLIQVVVSRK-------------GKG------SAS 55

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 56  AVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKV 113

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  ++E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 114 LEHLMKL-----KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN V ++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 229 DDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++  + +DEM + G+ P+++T++       T++ G CK  D + AF+   
Sbjct: 289 IYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYT-------TLIDGCCKEGDLDTAFEHRK 341

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD  T++ ++     + 
Sbjct: 342 QMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKG 401

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 402 DVWKGSKLL 410



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 145/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P       LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TLI GLC+ G + +   L  EM  K   P  +TYT+L
Sbjct: 264 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    ++M  + +  +   Y++L+ GLC+ G S  A ++L+ M++   
Sbjct: 324 IDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/375 (30%), Positives = 188/375 (50%), Gaps = 33/375 (8%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           TP  +  ++    E   ++ A   Y  M    + P + + N+++  L K  G  D  +K+
Sbjct: 125 TPNVFGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKK-GRFDTMWKV 180

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           + +M  RG +P+  TYGTLI+G CR G   +A  LF EM  K   PTVV YT LI GLC 
Sbjct: 181 YGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCG 240

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
              + EA  +F  MR+ G+ PN++TY+++MDG CK     +A+EL Q M+     PN+VT
Sbjct: 241 ESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVT 300

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           +  L++GLCK  ++  A + L  M   G+ P+  +Y  +I  +C  G   EA +   E+ 
Sbjct: 301 FGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIE 360

Query: 359 LGGITPNRLTWSLHIR----------------------------IHNTVVQGLCKT-DPN 389
              I P+  T+S+ I+                             +NT++ G CK  +  
Sbjct: 361 KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNME 420

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A +V   M  + I  + +T+S+LI  +CK G +  +  +  E+V+ G LPD   ++A++
Sbjct: 421 KAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480

Query: 450 TALWDRRKMRQAAEL 464
              +     ++A  L
Sbjct: 481 DGHFKDGNTKEAFRL 495



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 170/343 (49%), Gaps = 8/343 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   +  T+  +I        F  A  L D + ++K   T  I+  + RG     R  
Sbjct: 186 ARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRIS 245

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +F  M+  G  P   +Y T++    +   +K A   Y+ M   G+ P V +  +LI
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILI 305

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +  M +A K   +M + G  P+ + Y  LI+G C+ G + EA  L  E+E    
Sbjct: 306 DGLCK-TDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEI 364

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TY+ LI GLC    +EEA  L +EM+ KG  PN  TY++L+DG CK G   +A+E
Sbjct: 365 LPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIE 424

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   M  K   PNI+T+STL++G CK GK++ A+ +   M ++GL PD   Y  +I    
Sbjct: 425 VCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHF 484

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
             G  +EA     EM   G+ PN  T S        ++ GLCK
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFTLS-------CLIDGLCK 520



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 175/328 (53%), Gaps = 7/328 (2%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           L A R+FD+M E    PT   Y  ++  L  E+++  A   +R MR  G+ P + + N +
Sbjct: 210 LKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +   CK +  +  A ++++EM   G  P+  T+G LI+GLC+  ++  A++   +M +  
Sbjct: 270 MDGYCKIA-HVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P +  Y  LI+G C++ ++ EA+ L  E+    + P+VFTYS L+ GLC      +A 
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LLQ M  K   PN VTY+TL++G CKEG +++A+E+  +M  +G++P+   +  +I  +
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
           C  GK + A     EMV+ G+ P+ + ++  I  H          +   AF+++  M+  
Sbjct: 449 CKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH------FKDGNTKEAFRLHKEMQEA 502

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARI 429
            +  +  T S LI   CK G I  + ++
Sbjct: 503 GLHPNVFTLSCLIDGLCKDGRISDAIKL 530



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 151/298 (50%), Gaps = 1/298 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++++I  L   ++   AE +   +           + ++  GY ++     A+ ++ +M 
Sbjct: 231 YTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEML 290

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G  P   ++  ++  L + +++  A +F   M   G+ P +   N LI   CK +G +
Sbjct: 291 GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCK-AGNL 349

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
             A  +  E+      PD +TY  LI GLC + ++ EA  L +EM+ K   P  VTY +L
Sbjct: 350 SEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTL 409

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+  ++E+A+ +  +M  KG+EPN+ T+S+L+DG CK G    AM L   M+ K  
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
            P++V Y+ L++G  K+G  +EA  +   M+  GL P+      +I   C  G+  +A
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDA 527



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 147/293 (50%), Gaps = 13/293 (4%)

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
           + F +   + +   TP+   +G LI     +G + EA  ++ +M+     P +     ++
Sbjct: 111 SVFNVLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVL 165

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +GL +    +   +++ +M ++G  PNV TY +L+DG C+ G   +A  L   MI K+  
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF 225

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P +V Y+ L+ GLC E ++ EA  +   M+  G+ P+   Y  ++  +C I   ++A   
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALEL 285

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSS 412
             EM+  G+ PN +T+ +       ++ GLCKTD   + + +L  M +  +  +   Y+ 
Sbjct: 286 YQEMLGDGLLPNVVTFGI-------LIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNC 338

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           LI  +CK G++ ++  +  E+     LPD  T+S ++  L    +M +A  LL
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 3/173 (1%)

Query: 79  EKCDITEDIFLS--ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           EK +I  D+F    + +G   V R  +A  +  +MK+ G  P   +Y T++    +E  +
Sbjct: 360 EKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNM 419

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           + A      M E GI+P + + + LI   CK +G M+AA  ++ EM  +G  PD   Y  
Sbjct: 420 EKAIEVCSQMTEKGIEPNIITFSTLIDGYCK-AGKMEAAMGLYTEMVIKGLLPDVVAYTA 478

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           LI+G  + G   EA  L KEM+     P V T + LI+GLC+   + +A++LF
Sbjct: 479 LIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 13/220 (5%)

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +   + S    PNVF    L+    + G   +A+ +   M      P +   + +L+GL 
Sbjct: 115 VLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLV 169

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K+G+     ++   M  +G  P+   YG +I   C  G + +A    DEM+   I P  +
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
            +++ IR       GLC ++  + A  ++ +MRN  +  +  TY++++  +CK   + K+
Sbjct: 230 IYTILIR-------GLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
             +  E++ DG LP+  T+  ++  L    +M  A + L+
Sbjct: 283 LELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLI 322



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 23/243 (9%)

Query: 87  IFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK--SYITVLAILVEENQLKLAFRF 142
           IFL  S+   Y       DA  +FD++      P+    S+ +V++  V+  +   A + 
Sbjct: 666 IFLQTSLISMYSATGNVADAHNMFDEI------PSKNLISWTSVISAYVDNQRPNKALQL 719

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +R M+   +QP + ++ V + A C + G +D    I   + +RG   D     +LIN   
Sbjct: 720 FRQMQMDDVQPDIVTVTVALSA-CADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYS 778

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNV 261
           + G+I  A+            P  VT+  ++     +  VEE  + F  M+    + P +
Sbjct: 779 KCGEIGTARRF------SLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRI 832

Query: 262 FTYSSLMDGLCKGGCSSQAME-LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             +  ++D LC+ G  ++A E +L+M +    RPN V + TLL     +G   + + + +
Sbjct: 833 SHFGCMVDLLCRAGLLTEAYEFILKMPV----RPNAVVWRTLLGACSLQGMWDKKMLVRN 888

Query: 321 RMK 323
           ++K
Sbjct: 889 QIK 891



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 180/436 (41%), Gaps = 57/436 (13%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +  T++ +I           A ++  ++ ++  +     F ++  GY +  +   A
Sbjct: 398 GFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAA 457

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M ++ +M   G  P   +Y  ++    ++   K AFR ++ M+E G+ P V +L+ LI  
Sbjct: 458 MGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDG 517

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE----AKELFKEMETK 220
           LCK+ G +  A K+F  +   G    + T G+  N L R   +Y+    A  LF+ + ++
Sbjct: 518 LCKD-GRISDAIKLF--LAKTG----TDTTGSKTNELDR--SLYQMCSLALSLFRGI-SE 567

Query: 221 AC--------------SPTVVTYTSL--------INGLCQSKSVEEAMRLFEEMRSKGVE 258
            C               P    +T L        +    QS +  + +  F  +  K   
Sbjct: 568 PCICVIRVTKLFATNNQPKAHLHTHLKPPKSNQTLKRYLQSSNTSKVLLFFRILLRK--N 625

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQM---MISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           P+     SLM  L      S  +E  QM   +I+    P I   ++L++     G + +A
Sbjct: 626 PSSIDSFSLMFALKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISMYSATGNVADA 685

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
             + D +  + L      +  +IS + D  +  +A     +M +  + P+ +T ++ +  
Sbjct: 686 HNMFDEIPSKNLIS----WTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVAL-- 739

Query: 376 HNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             +    L   D       Y+  R+R +  D    +SLI  + K G+I  + R    LV 
Sbjct: 740 --SACADLGALDMGEWIHAYI--RHRGLDTDLCLNNSLINMYSKCGEIGTARRF--SLV- 792

Query: 436 DGCLPDEGTWSAVMTA 451
              LP++ T+  V+ A
Sbjct: 793 ---LPNDVTFMGVLMA 805


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 175/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRIAQSVFDAITKW 154

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 155 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDA 214

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 215 NELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 274

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M ++GLKPD   Y  +I   C  G    A      M+       
Sbjct: 275 LCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMI------- 327

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
           +    L   ++  ++ GLC+     D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 328 QENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSV---GLKPDARTYTMIINEFCKKG 384

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG +P   T++ +M  
Sbjct: 385 DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/268 (37%), Positives = 159/268 (59%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 203

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  +D A ++F EM  +G  P+S T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 204 GLCKES-KIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 262

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEH 322

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG   +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 323 RKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 382

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 383 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 410



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 182/361 (50%), Gaps = 21/361 (5%)

Query: 114 FGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVASLNVLIKAL 165
           F  + T +S + V + L+    E   L+ A   YR  RE    +    C   L  L+K  
Sbjct: 45  FETKGTQRSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKL- 103

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
                     +  + E+   G     Y +  L++  C+ G I  A+ +F  +      P+
Sbjct: 104 ----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPS 159

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK      A EL  
Sbjct: 160 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFD 219

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +I   C  G
Sbjct: 220 EMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 279

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404
             ++A + +DEM + G+ P+++T++       T++ G CK  D + AF+    M   +  
Sbjct: 280 DLKQAHHLIDEMSMKGLKPDKITYT-------TLIDGCCKDGDLDTAFEHRKRMIQENTR 332

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +D + Y++LI+  C++G    + +++ E++  G  PD  T++ ++     +  + + ++L
Sbjct: 333 LDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKL 392

Query: 465 L 465
           L
Sbjct: 393 L 393



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 146/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 128 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 187

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKN-GRV 246

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++  +PD  TY TLI GLC+ G + +A  L  EM  K   P  +TYT+L
Sbjct: 247 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTL 306

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  +    +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 307 IDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGL 366

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 367 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 413



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 19/305 (6%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E        D Y +  LI      G + +A E ++           
Sbjct: 32  KGKGSASAVFAAIFETKGTQ-RSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPF 90

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + K  +     +EE+   G   +++ ++ LM   CK G    A  +   
Sbjct: 91  DTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDA 150

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+Y+TL+NG  + G L E   +   M   G++PD   Y  +I+  C   K
Sbjct: 151 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 210

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM++ G+ PN +T++       T++ G CK    + A ++Y  M ++S+S 
Sbjct: 211 IDDANELFDEMLVKGLVPNSVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLSP 263

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM----------TALWDR 455
           D +TY++LI   CKKGD+ ++  ++DE+ + G  PD+ T++ ++          TA   R
Sbjct: 264 DLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHR 323

Query: 456 RKMRQ 460
           ++M Q
Sbjct: 324 KRMIQ 328



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 104/244 (42%), Gaps = 61/244 (25%)

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKR------------------HRPNIVTYST 301
            + +Y +++  LC     S+A  L+Q+++S++                   R ++  +S 
Sbjct: 1   TLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIFETKGTQRSDLYVFSG 60

Query: 302 LLNGLCKEGKLQEAVE-------------------ILDR-MKLQGLKPDAGLYGKIISC- 340
           L+    + G L++A+E                   +L+  MKL+  K   G Y +I+ C 
Sbjct: 61  LITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECG 120

Query: 341 --------------FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
                         FC  G  + A +  D +   G+ P+ +++       NT++ G  + 
Sbjct: 121 YPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSY-------NTLMNGYIRL 173

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            D +  F++  +M    +  D  TYS LI   CK+  I  +  + DE+++ G +P+  T+
Sbjct: 174 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTF 233

Query: 446 SAVM 449
           + ++
Sbjct: 234 TTLI 237


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 220/454 (48%), Gaps = 43/454 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G + D+ +++ MI  L  A +   AE+L  ++  E+       + ++  GYG   +  
Sbjct: 280 SQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFE 339

Query: 103 DAMRVFDKMKEFGC----------------------------------EPTPKSYITVLA 128
           +A ++ D++KE GC                                  EP   +Y  ++ 
Sbjct: 340 NAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIID 399

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
           +L    +++ A+     M   G+ P + ++N+++  LCK +   + A+++F     RGC 
Sbjct: 400 MLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCK-AKKFEPAYEMFETASQRGCN 458

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+S TY +LI+GL + G + +A  LF+ M     +   V YTSLI         E+  ++
Sbjct: 459 PNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKI 518

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F+EM  +G +P++   ++ MD + K G   +   + + +      P++ +YS L++GL K
Sbjct: 519 FKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTK 578

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G+ +E   I   MK QG   DA  Y  ++  FC  GK  +A   L+EM +  + P   T
Sbjct: 579 AGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVAT 638

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +        +++ GL K D  + A+ ++   +++ I ++ + YSSLI  F K G I ++ 
Sbjct: 639 YG-------SIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAY 691

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I++E++  G  P+  TW+++M AL    ++ +A
Sbjct: 692 LILEEMMKKGLTPNVYTWNSLMDALVKAEEINEA 725



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 209/447 (46%), Gaps = 44/447 (9%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T ++M+ +L  A +F PA ++ +  ++  C+     + S+  G G+     DA R+F+ M
Sbjct: 428 TVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENM 487

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN------------ 159
            + G    P  Y +++       + +   + ++ M   G QP +  LN            
Sbjct: 488 LDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDV 547

Query: 160 -----------------------VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
                                  +LI  L K +G       IF  M  +G   D+  Y  
Sbjct: 548 EKGRAIFEDIKGYGFLPDVRSYSILIHGLTK-AGQARETSSIFHAMKQQGFALDARAYNA 606

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +++G C+ GK+ +A E+ +EM+ K   PTV TY S+I+GL +   ++EA  LFEE +SKG
Sbjct: 607 VVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKG 666

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           +E NV  YSSL+DG  K G   +A  +L+ M+ K   PN+ T+++L++ L K  ++ EA+
Sbjct: 667 IELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEAL 726

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
                MK     P+   Y  +I+  C + KY +A  F  EM   G+ PN +T++      
Sbjct: 727 ICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYT------ 780

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            T++ GL K  +   A  ++   +    + D+ ++++LI          ++  + +E  L
Sbjct: 781 -TMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRL 839

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAA 462
            GC  +     +++ AL     + QAA
Sbjct: 840 KGCRINVKACISLLDALNKAECLEQAA 866



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 203/420 (48%), Gaps = 8/420 (1%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FR   S ++++I  +  A Q   A +LL ++ +   ++   +F ++ R   R  R   A+
Sbjct: 178 FRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGAL 237

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            + D++K    EP    Y   +    +   + +A++F+  ++  G++P   S   +I  L
Sbjct: 238 ALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVL 297

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK +G +  A ++F +M      P +Y Y T+I G    G+   A +L  +++ + C P+
Sbjct: 298 CK-AGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPS 356

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV++ S++  L + + V+EA+ LFE M+ K  EPN  TY+ ++D LC  G   +A  +  
Sbjct: 357 VVSFNSILTCLGKKRKVDEALTLFEAMK-KDAEPNSSTYNIIIDMLCMAGKVEEAYMIRD 415

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M      PN++T + +++ LCK  K + A E+ +    +G  P++  Y  +I      G
Sbjct: 416 EMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKG 475

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
              +A    + M+  G   N + ++  IR  N  + G  K D ++ F+    M  R    
Sbjct: 476 NVDDAYRLFENMLDTGHNANPVVYTSLIR--NFFMHGR-KEDGHKIFK---EMNRRGCQP 529

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D    ++ + C  K GD+ K   I +++   G LPD  ++S ++  L    + R+ + + 
Sbjct: 530 DLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIF 589



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 171/367 (46%), Gaps = 43/367 (11%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           +V ++M   G      +   +++ LV   +L  A R    MR +  +P  ++  VLI A+
Sbjct: 133 KVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAM 192

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            + +   + A ++ R+M   G       + TL+  L R G++  A  L  E++     P 
Sbjct: 193 AE-ARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPD 251

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           +V Y   I+   ++ +V+ A + F E++S+G++P+  +Y+S++  LCK G  S+A EL  
Sbjct: 252 IVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFG 311

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG------------------- 326
            M ++R  P    Y+T++ G    G+ + A ++LD++K +G                   
Sbjct: 312 QMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKR 371

Query: 327 ---------------LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
                           +P++  Y  II   C  GK +EA    DEM   G+ PN LT   
Sbjct: 372 KVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTV-- 429

Query: 372 HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                N +V  LCK      A++++ +   R  + +S+TY SLI    KKG++  + R+ 
Sbjct: 430 -----NIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLF 484

Query: 431 DELVLDG 437
           + ++  G
Sbjct: 485 ENMLDTG 491



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 141/274 (51%), Gaps = 1/274 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D   ++ ++     + +   A ++L+ +  ++   T   + SI  G  ++ R  +A
Sbjct: 596 GFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEA 655

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F++ K  G E     Y +++    +  ++  A+     M + G+ P V + N L+ A
Sbjct: 656 YMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDA 715

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L K +  ++ A   F+ M    C+P++YTY  LINGLCR+ K  +A   ++EM+ +   P
Sbjct: 716 LVK-AEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVP 774

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT++I GL +  ++ +A  LFE  ++ G  P+  ++++L++G+     + +A  + 
Sbjct: 775 NVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVF 834

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           +    K  R N+    +LL+ L K   L++A  +
Sbjct: 835 EETRLKGCRINVKACISLLDALNKAECLEQAAVV 868



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 141/358 (39%), Gaps = 47/358 (13%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVA-SLNVLIKALCKNSGTMDAAFKIFREMPN 184
           V+ +L       LA  F+         P  A + N ++  L  +   M+   K+  EM  
Sbjct: 84  VIPVLRTLRNPSLAAPFFLASSAASPHPLPADAYNAVLPFLSHDLAAME---KVLEEMSV 140

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
            G    +     L++ L R  ++ +A+ +   M      P    YT LI  + +++  E 
Sbjct: 141 LGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPER 200

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A+ L  +M+  G E  V  +++L+  L + G    A+ L+  +      P+IV Y+  ++
Sbjct: 201 ALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCID 260

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
              K G +  A +    +K QGLKPD   Y  +I   C  G+  EA     +M      P
Sbjct: 261 CFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVP 320

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
                              C                      +  Y+++I  +   G   
Sbjct: 321 -------------------C----------------------AYAYNTMIMGYGSAGQFE 339

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            + +++D+L   GC+P   ++++++T L  +RK+ +A  L L E M K  E      N
Sbjct: 340 NAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEA--LTLFEAMKKDAEPNSSTYN 395


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 198/386 (51%), Gaps = 11/386 (2%)

Query: 83  ITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           I+ D+  F  +   + R  R   A+ V  KM + G EP+  ++ ++L      N++  AF
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
                M + G +P V   N LI  LCKN G ++ A ++  EM  +G   D  TY TL+ G
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKN-GELNIALELLNEMEKKGLGADVVTYNTLLTG 220

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC  G+  +A  + ++M  ++ +P VVT+T+LI+   +  +++EA  L++EM    V+PN
Sbjct: 221 LCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPN 280

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY+S+++GLC  G    A +   +M SK   PN+VTY+TL++G CK   + E +++  
Sbjct: 281 NVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQ 340

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           RM  +G   D   Y  +I  +C +GK + A +    MV   +TP+ +T       H  ++
Sbjct: 341 RMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIIT-------HCILL 393

Query: 381 QGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GLC   +   A   +  MR     +  + Y+ +I   CK   + K+  +   L ++G  
Sbjct: 394 HGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVK 453

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           PD  T++ ++  L      R+A EL+
Sbjct: 454 PDARTYTIMILGLCKNGPRREADELI 479



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 188/369 (50%), Gaps = 30/369 (8%)

Query: 110  KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
            KM + G  P+  +  ++L    + N+ + A      M   G  P V   N +I  LCKN 
Sbjct: 664  KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 723

Query: 170  GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
              ++ A ++F  M  +G   D+ TY TLI+GL   G+  +A  L ++M  +   P V+ +
Sbjct: 724  -DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFF 782

Query: 230  TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
            T+LI+   +  ++ EA  L++EM  + V PNVFTY+SL++G C  GC   A  +  +M+S
Sbjct: 783  TALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS 842

Query: 290  KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
            K   P++VTY+TL+ G CK  ++++ +++   M  QGL  DA  Y  +I  +C  GK   
Sbjct: 843  KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNV 902

Query: 350  AANFLDEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQ 381
            A    + MV  G++P+ +T+++                             I  +N ++Q
Sbjct: 903  AQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQ 962

Query: 382  GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            GLC+TD    A+ ++ S+  + +  D++ Y ++I+  C+KG   ++ ++   +  DG +P
Sbjct: 963  GLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMP 1022

Query: 441  DEGTWSAVM 449
             E  +   +
Sbjct: 1023 SERIYDETL 1031



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/403 (30%), Positives = 201/403 (49%), Gaps = 14/403 (3%)

Query: 33  VIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92
           VI+ S   E   G  HD  +F+++I      ++   A  +L ++ K   + +   F S+ 
Sbjct: 90  VIYFSQKMELY-GISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLL 148

Query: 93  RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ 152
            G+  V+R  DA  +   M + G EP    Y T++  L +  +L +A      M + G+ 
Sbjct: 149 HGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLG 208

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
             V + N L+  LC +    DAA ++ R+M  R   PD  T+  LI+   + G + EA+E
Sbjct: 209 ADVVTYNTLLTGLCYSGRWSDAA-RMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQE 267

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           L+KEM   +  P  VTY S+INGLC    + +A + F+ M SKG  PNV TY++L+ G C
Sbjct: 268 LYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFC 327

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K     + M+L Q M  +    +I TY+TL++G C+ GKL+ A++I   M  + + PD  
Sbjct: 328 KFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDII 387

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            +  ++   C  G+ + A    D+M             + I  +N ++ GLCK D   +A
Sbjct: 388 THCILLHGLCVNGEIESALVKFDDM-------RESEKYIGIVAYNIMIHGLCKADKVEKA 440

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           ++++  +    +  D+ TY+ +I   CK G      R  DEL+
Sbjct: 441 WELFCRLPVEGVKPDARTYTIMILGLCKNG----PRREADELI 479



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 195/384 (50%), Gaps = 12/384 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F +M +    P+   +  VL ++ + N+  +    Y  M  +GI   + S  +LI
Sbjct: 587 DAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI 646

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  A  +  +M   G  P   T G+L+NG C+  +  EA  L   M+    
Sbjct: 647 HCFCR-CSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGF 705

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y ++INGLC+++ +  A+ +F  M  KG+  +  TY++L+ GL   G  + A  
Sbjct: 706 VPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAAR 765

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+ ++  PN++ ++ L++   KEG L EA  +   M  + + P+   Y  +I+ FC
Sbjct: 766 LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFC 825

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G   +A    D MV  G  P+ +T+       NT++ G CK+       +++  M  +
Sbjct: 826 IHGCLGDAKYMFDLMVSKGCFPDVVTY-------NTLITGFCKSKRVEDGMKLFCEMTYQ 878

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D+ TY++LI  +C+ G ++ + ++ + +V  G  PD  T++ ++  L +  K+ +A
Sbjct: 879 GLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKA 938

Query: 462 AELLLLELMNKCVEAEVDIQNQDV 485
             L+++E + K  E +VDI   ++
Sbjct: 939 --LVMVEDLQKS-EMDVDIITYNI 959



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 168/360 (46%), Gaps = 9/360 (2%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G+    R  DA  +F +M      P+   +  +L       + +    F + M   GI  
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            + S  +LI   C+ S  +  A  +  +M   G  P   T+G+L++G C + +I +A  L
Sbjct: 105 DLYSFTILIHCFCRCS-RLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
              M      P VV Y +LI+GLC++  +  A+ L  EM  KG+  +V TY++L+ GLC 
Sbjct: 164 VILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G  S A  +L+ M+ +   P++VT++ L++   K+G L EA E+   M    + P+   
Sbjct: 224 SGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAF 392
           Y  II+  C  G+  +A    D M   G  PN +T+       NT++ G CK    +   
Sbjct: 284 YNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTY-------NTLISGFCKFRMVDEGM 336

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +++  M     + D  TY++LI  +C+ G +  +  I   +V     PD  T   ++  L
Sbjct: 337 KLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGL 396



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 142/289 (49%), Gaps = 1/289 (0%)

Query: 90   SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            ++  G     R  DA R+   M +   +P    +  ++   V+E  L  A   Y+ M   
Sbjct: 749  TLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRR 808

Query: 150  GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
             + P V + N LI   C +    DA + +F  M ++GC PD  TY TLI G C+  ++ +
Sbjct: 809  SVVPNVFTYNSLINGFCIHGCLGDAKY-MFDLMVSKGCFPDVVTYNTLITGFCKSKRVED 867

Query: 210  AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
              +LF EM  +       TY +LI+G CQ+  +  A ++F  M   GV P++ TY+ L+D
Sbjct: 868  GMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLD 927

Query: 270  GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
             LC  G   +A+ +++ +       +I+TY+ ++ GLC+  KL+EA  +   +  +G+KP
Sbjct: 928  CLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKP 987

Query: 330  DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
            DA  Y  +IS  C  G  +EA      M   G  P+   +   +R H T
Sbjct: 988  DAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYT 1036



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 164/351 (46%), Gaps = 1/351 (0%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           VN+    F        +G+  +   ++ +I  L    +   A +LL+ + K+        
Sbjct: 154 VNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVT 213

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G     R  DA R+   M +    P   ++  ++ + V++  L  A   Y+ M 
Sbjct: 214 YNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMI 273

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           +  + P   + N +I  LC +    DA  K F  M ++GC P+  TY TLI+G C+   +
Sbjct: 274 QSSVDPNNVTYNSIINGLCMHGRLYDAK-KTFDLMASKGCFPNVVTYNTLISGFCKFRMV 332

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            E  +LF+ M  +  +  + TY +LI+G CQ   +  A+ +F  M S+ V P++ T+  L
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCIL 392

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + GLC  G    A+     M        IV Y+ +++GLCK  K+++A E+  R+ ++G+
Sbjct: 393 LHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           KPDA  Y  +I   C  G  +EA   +  M   GI         H+  H++
Sbjct: 453 KPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEEHSS 503



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 156/331 (47%), Gaps = 15/331 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           AF  +  M      P +     L+ A   N    +      ++M   G + D Y++  LI
Sbjct: 55  AFALFFEMVHSQPLPSIVDFTRLLTA-TANLRRYETVIYFSQKMELYGISHDLYSFTILI 113

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +  CR  ++  A  +  +M      P++VT+ SL++G C    + +A  L   M   G E
Sbjct: 114 HCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYE 173

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PNV  Y++L+DGLCK G  + A+ELL  M  K    ++VTY+TLL GLC  G+  +A  +
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARM 233

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L  M  + + PD   +  +I  F   G   EA     EM+   + PN +T+       N+
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY-------NS 286

Query: 379 VVQGLCKT----DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           ++ GLC      D  + F +   M ++    + +TY++LI+ FCK   + +  ++   + 
Sbjct: 287 IINGLCMHGRLYDAKKTFDL---MASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMS 343

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +G   D  T++ ++       K+R A ++ 
Sbjct: 344 CEGFNADIFTYNTLIHGYCQVGKLRVALDIF 374



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 148/294 (50%), Gaps = 6/294 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D AF +F EM      P    +  ++  + ++ K      L+ +ME    S  + ++T 
Sbjct: 585 FDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTI 644

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+  C+   +  A+ L  +M   G  P++ T  SL++G C+G    +A+ L+  M    
Sbjct: 645 LIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFG 704

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN+V Y+T++NGLCK   L  A+E+   M+ +G++ DA  Y  +IS   + G++ +AA
Sbjct: 705 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 764

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
             L +MV   I PN + ++  I   +T V+   + +   A  +Y  M  RS+  +  TY+
Sbjct: 765 RLLRDMVKRKIDPNVIFFTALI---DTFVK---EGNLLEARNLYKEMIRRSVVPNVFTYN 818

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           SLI  FC  G +  +  + D +V  GC PD  T++ ++T     +++    +L 
Sbjct: 819 SLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLF 872



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 1/154 (0%)

Query: 90   SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            ++  GY +  +   A +VF++M + G  P   +Y  +L  L    +++ A      +++ 
Sbjct: 889  TLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS 948

Query: 150  GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
             +   + + N++I+ LC+ +  +  A+ +FR +  +G  PD+  Y T+I+GLCR G   E
Sbjct: 949  EMDVDIITYNIIIQGLCR-TDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQRE 1007

Query: 210  AKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
            A +L + M+     P+   Y   +     S S E
Sbjct: 1008 ADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAE 1041


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 175/327 (53%), Gaps = 9/327 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 95  VLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 153

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 154 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 213

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 214 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 273

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L +A  ++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 274 LCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD 333

Query: 366 RLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            + ++        ++ GLC+   P  A ++   M +  +  D+ TY+ +I  FCKKGD+ 
Sbjct: 334 DVAYT-------AIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVW 386

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTA 451
           K ++++ E+  +G +P   T++ +M  
Sbjct: 387 KGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 157/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 143 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 202

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++  
Sbjct: 203 GLCKES-KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 261

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   + +A  L +EM  KG++P+ FTY++L+DG CK G    A E 
Sbjct: 262 PDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEH 321

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ +++GLC+EG+  +A ++L  M   GLKPD G Y  II+ FC 
Sbjct: 322 RKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 381

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+  T+++
Sbjct: 382 KGDVWKGSKLLKEMQRNGHVPSVXTYNV 409



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 179/356 (50%), Gaps = 21/356 (5%)

Query: 119 TPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVASLNVLIKALCKNSG 170
           T +S I V + L+    E   L+ A   YR  RE    +    C   L  L+K       
Sbjct: 49  TQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLR----- 103

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
                +  + E+   G     Y +  L++  C+ G I  A+ +F  +      P+VV+Y 
Sbjct: 104 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 163

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK      A EL   M+ K
Sbjct: 164 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 223

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +I   C  G   +A
Sbjct: 224 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQA 283

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
              +DEM + G+ P++ T++       T++ G CK  D + AF+    M   +I +D + 
Sbjct: 284 HGLIDEMSMKGLKPDKFTYT-------TLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVA 336

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y+++I+  C++G    + +++ E++  G  PD GT++ ++     +  + + ++LL
Sbjct: 337 YTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLL 392



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 186

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 187 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 245

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TLI GLC+ G + +A  L  EM  K   P   TYT+L
Sbjct: 246 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTL 305

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++++ GLC+ G    A ++L+ M+S   
Sbjct: 306 IDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGL 365

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 366 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMN 412



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 109/203 (53%), Gaps = 1/203 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M   G  P   ++ T++    +  ++ LA   Y+ M    + P + + N LI
Sbjct: 212 DANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI 271

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G ++ A  +  EM  +G  PD +TY TLI+G C+ G +  A E  K M  +  
Sbjct: 272 YGLCKK-GDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENI 330

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V YT++I+GLCQ     +A ++  EM S G++P+  TY+ +++  CK G   +  +
Sbjct: 331 RLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 390

Query: 283 LLQMMISKRHRPNIVTYSTLLNG 305
           LL+ M    H P++ TY+ L+NG
Sbjct: 391 LLKEMQRNGHVPSVXTYNVLMNG 413



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E        D Y +  LI      G + +A E ++           
Sbjct: 31  KGKGSASAVFAAILETKGTQ-RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPF 89

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + +  +     +EE+   G   +++ ++ LM   CK G    A  +   
Sbjct: 90  DTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDA 149

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+Y+TL+NG  + G L E   +   M   G++PD   Y  +I+  C   K
Sbjct: 150 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 209

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM++ G+ PN +T++       T++ G CK    + A ++Y  M ++S+  
Sbjct: 210 MDDANELFDEMLVKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLLP 262

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           D +TY++LI   CKKGD++++  ++DE+ + G  PD+ T++ ++
Sbjct: 263 DLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLI 306



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 102/241 (42%), Gaps = 61/241 (25%)

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKR------------------HRPNIVTYSTLLN 304
           +Y +++  LC     S+A  L+Q ++S++                   R +I  +S L+ 
Sbjct: 3   SYCTMIHFLCTHQMFSEAKSLIQXVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 62

Query: 305 GLCKEGKLQEAVE-------------------ILDR-MKLQGLKPDAGLYGKIISC---- 340
              + G L++A+E                   +L+  MKL+  K   G Y +I+ C    
Sbjct: 63  AYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPA 122

Query: 341 -----------FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDP 388
                      FC  G  + A +  D +   G+ P+ +++       NT++ G  +  D 
Sbjct: 123 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY-------NTLMNGYIRLGDL 175

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           +  F++  +M    +  D  TYS LI   CK+  +  +  + DE+++ G +P+  T++ +
Sbjct: 176 DEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 235

Query: 449 M 449
           +
Sbjct: 236 I 236


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 196/368 (53%), Gaps = 10/368 (2%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H P  A+ +  +M+  G EP   +   ++       Q+  +F     + ++G QP   +L
Sbjct: 80  HYP-TAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITL 138

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N L+K LC   G +  +     ++  +G   +  +YGTL+NGLC++G+   A +L + +E
Sbjct: 139 NTLMKGLCL-KGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIE 197

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            ++  P VV Y+++I+GLC+ K V +A   F EM ++G+ PNV TYS+L+ G C  G   
Sbjct: 198 DRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLM 257

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A  LL  MI K   PN+ TY+ L++ LCKEGK++EA ++L  M  +G   D   Y  ++
Sbjct: 258 GAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVL 317

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
              C      +A     +M   GI PN+ T++        ++ GLCK      A +++  
Sbjct: 318 DGLCKSQNLDKATALFMKMKKWGIQPNKYTYT-------ALIDGLCKGGRLKNAQKLFQH 370

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +  +   +D  TY+ +I+  CK+G   K+  +  ++  +GC+P+  T+  ++ +L+++ +
Sbjct: 371 LLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDE 430

Query: 458 MRQAAELL 465
             +A +LL
Sbjct: 431 NDKAEKLL 438



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 172/318 (54%), Gaps = 1/318 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ D  T + ++  L    + + +    D+V  +   + +  + ++  G  ++     A
Sbjct: 130 GYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCA 189

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++   +++    P    Y T++  L ++  +  A+ F+  M   GI P V + + LI  
Sbjct: 190 VKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWG 249

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C  +G +  AF +  EM  +   P+ YTY  LI+ LC+ GK+ EAK+L  EM  K    
Sbjct: 250 FCL-AGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPA 308

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY S+++GLC+S+++++A  LF +M+  G++PN +TY++L+DGLCKGG    A +L 
Sbjct: 309 DVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLF 368

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           Q ++ K    ++ TY+ +++GLCKEG   +A+ +  +M+  G  P+A  +  II    + 
Sbjct: 369 QHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEK 428

Query: 345 GKYQEAANFLDEMVLGGI 362
            +  +A   L  M+  G+
Sbjct: 429 DENDKAEKLLHGMIAKGL 446



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 165/313 (52%), Gaps = 11/313 (3%)

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
            A  + R+M  +G  P+  T   LIN  C LG++  +  +  ++      P  +T  +L+
Sbjct: 83  TAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLM 142

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
            GLC    V+ ++   +++ ++G + N  +Y +L++GLCK G +  A++LL+M+  +  R
Sbjct: 143 KGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTR 202

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P++V YST+++GLCK+  + +A +    M  +G+ P+   Y  +I  FC  G+   A + 
Sbjct: 203 PDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSL 262

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
           L+EM+L  I PN  T+       N ++  LCK      A ++   M ++    D +TY+S
Sbjct: 263 LNEMILKNINPNVYTY-------NILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNS 315

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           ++   CK  ++ K+  +  ++   G  P++ T++A++  L    +++ A +L    L+  
Sbjct: 316 VLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKG 375

Query: 473 CVEAEVDIQNQDV 485
           C    +D++  +V
Sbjct: 376 CC---IDVRTYNV 385



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 141/280 (50%), Gaps = 8/280 (2%)

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           TP    +G ++  L ++     A  L ++ME K   P +VT   LIN  C    +  +  
Sbjct: 62  TPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFS 121

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +  ++   G +P+  T ++LM GLC  G   +++     ++++  + N V+Y TLLNGLC
Sbjct: 122 VLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLC 181

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K G+ + AV++L  ++ +  +PD  +Y  II   C      +A +F  EM   GI PN +
Sbjct: 182 KIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVI 241

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+S       T++ G C       AF +   M  ++I+ +  TY+ LI   CK+G + ++
Sbjct: 242 TYS-------TLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEA 294

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +++ E+   G   D  T+++V+  L   + + +A  L +
Sbjct: 295 KKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFM 334



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 124/270 (45%), Gaps = 30/270 (11%)

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V++ +  F  +      P +  +  ++  L K      A+ L + M  K   PN+VT + 
Sbjct: 46  VDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNI 105

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L+N  C  G++  +  +L ++   G +PD      ++   C  G+ + + +F D++V  G
Sbjct: 106 LINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQG 165

Query: 362 ITPNRLTWSL----------------------------HIRIHNTVVQGLCKTD-PNRAF 392
              N++++                               + +++T++ GLCK    N+A+
Sbjct: 166 FQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAY 225

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             +  M  R I  + +TYS+LI  FC  G +  +  +++E++L    P+  T++ ++ AL
Sbjct: 226 DFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDAL 285

Query: 453 WDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
               K+++A + LL E+ +K   A+V   N
Sbjct: 286 CKEGKVKEAKK-LLAEMHHKGQPADVVTYN 314



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           E  + + V   +R+ L    P    +GKI+     +  Y  A +   +M + GI PN +T
Sbjct: 43  ENVVDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVT 102

Query: 369 WSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                   N ++   C       +F V   +       D++T ++L+   C KG++ +S 
Sbjct: 103 L-------NILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSL 155

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              D++V  G   ++ ++  ++  L    + R A +LL
Sbjct: 156 HFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLL 193


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 226/455 (49%), Gaps = 45/455 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G R D+ +++ M+  L  A +   AE+L  ++  E+       + ++  GYG   R  
Sbjct: 274 AHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFD 333

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA ++ ++++E GC P+  S+ ++L  L ++ ++  A   +  M++   +P +++ N++I
Sbjct: 334 DAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK-DAKPNISTYNIII 392

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC  +G ++ A+KI  EM   G  P+  +   +++ LC+  ++ EA  +F+    + C
Sbjct: 393 DMLCM-AGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGC 451

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL--------------- 267
           +P  VTY SLI+GL +   +++A RLFE+M   G + N   Y+SL               
Sbjct: 452 NPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHK 511

Query: 268 --------------------MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
                               MD + K G   +   + + M S    P++ +YS L++GL 
Sbjct: 512 IYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLT 571

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K G+ +E   I   M  QG   DA  Y  ++   C  GK  +A   L+EM +  + P   
Sbjct: 572 KAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVA 631

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+        ++V GL K D  + A+ ++   +++ I ++ + YSSLI  F K G I ++
Sbjct: 632 TY-------GSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEA 684

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             I++E++  G  P+  TW+++M AL    ++ +A
Sbjct: 685 YLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEA 719



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 214/447 (47%), Gaps = 44/447 (9%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           + ++M+ +L  ANQ   A  + +  ++  C+     + S+  G G+  +  DA R+F+KM
Sbjct: 422 SVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKM 481

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM------------------------- 146
            + G +  P  Y +++       + +   + Y+ M                         
Sbjct: 482 LDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEV 541

Query: 147 ----------REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
                     +  G  P V S ++LI  L K +G       IF+ M  +G   D+  Y  
Sbjct: 542 EKGRAIFEDMKSFGFLPDVRSYSILIHGLTK-AGQARETSNIFQAMSQQGFALDARAYNA 600

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +++GLC+ GK+ +A E+ +EM+ K   PTV TY S+++GL +   ++EA  LFEE +SKG
Sbjct: 601 VVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKG 660

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           +E NV  YSSL+DG  K G   +A  +L+ M+ K   PN+ T+++L++ L K  ++ EA+
Sbjct: 661 IELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEAL 720

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
                MK     P+   Y  +I+  C + KY +A  F  EM   G+ PN +T++      
Sbjct: 721 ICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYT------ 774

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            T++ GL K  +   A+ ++   +      DS ++++LI          ++ ++ +E  L
Sbjct: 775 -TMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRL 833

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAA 462
            GC  +  T  +++ AL     + QAA
Sbjct: 834 RGCRLNVKTCISLLDALNKTECLEQAA 860



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 208/420 (49%), Gaps = 8/420 (1%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FR   S ++++I  L  A Q   A +LL ++     +++  +F ++ R   R  +   A+
Sbjct: 172 FRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPAL 231

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            + D++K    EP    Y   +    +   + +A++F+  ++  G++P   S   ++  L
Sbjct: 232 ALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVL 291

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK +G +  A ++F +M      P +Y Y T+I G     +  +A +L + +  + C P+
Sbjct: 292 CK-AGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPS 350

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV++ S++  L + + V+EA+ LF+ M+ K  +PN+ TY+ ++D LC  G  ++A ++  
Sbjct: 351 VVSFNSILTCLGKKRKVDEALTLFDVMK-KDAKPNISTYNIIIDMLCMAGRVNEAYKIRD 409

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M      PN+++ + +++ LCK  +L+EA  I +    +G  P++  Y  +I      G
Sbjct: 410 EMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKG 469

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV 405
           K  +A    ++M+  G   N + ++  IR  N  + G  K D ++   +Y  M  R    
Sbjct: 470 KIDDAYRLFEKMLDAGHDANPIIYTSLIR--NFFMHGR-KEDGHK---IYKEMIRRGGRP 523

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D    ++ + C  K G++ K   I +++   G LPD  ++S ++  L    + R+ + + 
Sbjct: 524 DLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIF 583



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 173/368 (47%), Gaps = 45/368 (12%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           +V ++M   G      +   ++A LV   +L+ AFR    MR +  +P  ++  VLI AL
Sbjct: 127 KVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGAL 186

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            + +   + A ++ R+M + G       + TL+  L R G++  A  L  E++     P 
Sbjct: 187 AE-ARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPD 245

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           +V Y   I+   ++ SV+ A + F E+++ G+ P+  +Y+S++  LCK G   +A EL  
Sbjct: 246 IVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFG 305

Query: 286 MMISKRHR-----------------------------------PNIVTYSTLLNGLCKEG 310
            M ++R                                     P++V+++++L  L K+ 
Sbjct: 306 QMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKR 365

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           K+ EA+ + D MK +  KP+   Y  II   C  G+  EA    DEM L G+ PN L+  
Sbjct: 366 KVDEALTLFDVMK-KDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSV- 423

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N +V  LCK +    A +++ S   R  + +S+TY SLI    KKG I  + R+
Sbjct: 424 ------NIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRL 477

Query: 430 VDELVLDG 437
            ++++  G
Sbjct: 478 FEKMLDAG 485



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 143/337 (42%), Gaps = 14/337 (4%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA-SLNVLIKALCKNSGTMDAAF 176
           P P   + V  +   +N   LA  F+        QP    + N ++  L  +   ++   
Sbjct: 71  PAPAHDVVVYVLRSLKNP-SLAAPFFLLASASSSQPLPPDAYNAVLPFLSHDLAALE--- 126

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           K+  EM + G    +     L+  L R  ++ +A  +   M      P    YT LI  L
Sbjct: 127 KVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGAL 186

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
            +++  E A+ L  +M+  G E +V  +++L+  L + G    A+ L+  +      P+I
Sbjct: 187 AEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDI 246

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           V Y+  ++   K G +  A +    +K  GL+PD   Y  ++   C  G+  EA     +
Sbjct: 247 VLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQ 306

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           M      P    +       NT++ G    +  + A+++   +R R      ++++S++T
Sbjct: 307 MEAERDVPCAYAY-------NTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILT 359

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           C  KK  + ++  + D +  D   P+  T++ ++  L
Sbjct: 360 CLGKKRKVDEALTLFDVMKKDA-KPNISTYNIIIDML 395



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 136/354 (38%), Gaps = 88/354 (24%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSY--TYGTLINGLCRLGKIYEA-KELFKEMETKACS 223
           KN       F +     ++   PD+Y      L + L  L K+ E    L   +   AC+
Sbjct: 86  KNPSLAAPFFLLASASSSQPLPPDAYNAVLPFLSHDLAALEKVLEEMSHLGYGLPNPACA 145

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             V T       L +S+ +E+A R+   MR     P    Y+ L+  L +     +A+EL
Sbjct: 146 ALVAT-------LVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALEL 198

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ M    +  ++  ++TL+  L +EG+++ A+ ++D +K   L+PD  LY   I CF  
Sbjct: 199 LRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGK 258

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
            G    A  F  E+   G+ P                                       
Sbjct: 259 AGSVDMAWKFFHELKAHGLRP--------------------------------------- 279

Query: 404 SVDSLTYSSLITCFCKKGDIHKSA-----------------------------------R 428
             D ++Y+S++   CK G + ++                                    +
Sbjct: 280 --DDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYK 337

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +++ L   GC+P   ++++++T L  +RK+ +A  L L ++M K  +  +   N
Sbjct: 338 LLERLRERGCIPSVVSFNSILTCLGKKRKVDEA--LTLFDVMKKDAKPNISTYN 389


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/468 (28%), Positives = 224/468 (47%), Gaps = 48/468 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPL 102
           G + +   ++ ++  LV   +F  A  +L  +  +   ++ D+F   ++  G+ +  +  
Sbjct: 472 GLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQ--GLSPDVFCYNTVIIGFCKAGKME 529

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +      +M   G +P   +Y   +       +++ A R +  M + GI P       LI
Sbjct: 530 EGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLI 589

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK+ G    AF  FR M ++G  PD  T+  LI+GL + GK+ EA  +F E+  K  
Sbjct: 590 DGYCKD-GNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGL 648

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TYTSLI+ LC+   ++ A  L ++M  KG+ PN+ TY++L++GLCK G  ++A E
Sbjct: 649 VPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARE 708

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY-------- 334
           L   +  K    N VTYST++ G CK   L EA ++   MKL G+ PD+ +Y        
Sbjct: 709 LFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCC 768

Query: 335 --------------------------GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
                                       +I  F  +GK  EA   +++MV   ITPN +T
Sbjct: 769 KAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVT 828

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +++ I  H TV       +   A Q+++ M+ R++  + LTY+SL+  + + G   +   
Sbjct: 829 YTILIEYHCTV------GNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFS 882

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL---LLLELMNKC 473
           + DE+V  G  PD+  WS ++ A        +A +L   +L E +N C
Sbjct: 883 LFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVC 930



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 202/426 (47%), Gaps = 9/426 (2%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           +A   + +  T+  +I  L        AEDL   +           +  +  GY +V   
Sbjct: 364 FARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNM 423

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A  +  ++K+            ++  L     L  A   ++ M   G++P +     +
Sbjct: 424 EKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTI 483

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +K L K  G  + A KI   M ++G +PD + Y T+I G C+ GK+ E K    EM  K 
Sbjct: 484 VKGLVK-EGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKG 542

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P V TY + I+G C++  ++ A R F EM   G+ PN    + L+DG CK G +++A 
Sbjct: 543 LKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAF 602

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
              + M+ +   P++ T+S L++GL K GKLQEA+ +   +  +GL PD   Y  +IS  
Sbjct: 603 AKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNL 662

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRN 400
           C  G  + A    D+M   GI PN +T+       N ++ GLCK  +  +A +++  +  
Sbjct: 663 CKEGDLKAAFELHDDMCKKGINPNIVTY-------NALINGLCKLGEIAKARELFDGIPE 715

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + ++ +S+TYS++I  +CK  ++ ++ ++   + L G  PD   + A++          +
Sbjct: 716 KGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEK 775

Query: 461 AAELLL 466
           A  L L
Sbjct: 776 ALSLFL 781



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 204/426 (47%), Gaps = 43/426 (10%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++   Y RV +  +   V   M+E GC P   +Y  V+A L     +  A    R M 
Sbjct: 235 YTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMA 294

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDA--------------------------------- 174
             G+ P       LI   C+   + +                                  
Sbjct: 295 NKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIG 354

Query: 175 -AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
            AF++  EM  R    +++TY  LI+GLC++G + +A++LF EM      P + TY  LI
Sbjct: 355 GAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLI 414

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
            G  + +++E+A  L  E++ + +  N +   ++++GLC  G  ++A EL Q MIS   +
Sbjct: 415 EGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLK 474

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PNIV Y+T++ GL KEG+ +EA++IL  MK QGL PD   Y  +I  FC  GK +E  ++
Sbjct: 475 PNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSY 534

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSISVDSLTYSS 412
           L EM+  G+ PN  T+          + G C+    +A +  ++ M +  I+ + +  + 
Sbjct: 535 LVEMIAKGLKPNVYTYG-------AFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTD 587

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           LI  +CK G+  K+      ++  G LPD  T S ++  L    K+++A   +  EL++K
Sbjct: 588 LIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMG-VFSELLDK 646

Query: 473 CVEAEV 478
            +  +V
Sbjct: 647 GLVPDV 652



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 210/423 (49%), Gaps = 8/423 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + +  T+   I     A + + AE     +        + I   +  GY +     
Sbjct: 540 AKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTT 599

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A   F  M + G  P  +++  ++  L +  +L+ A   +  + + G+ P V +   LI
Sbjct: 600 KAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLI 659

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G + AAF++  +M  +G  P+  TY  LINGLC+LG+I +A+ELF  +  K  
Sbjct: 660 SNLCK-EGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGL 718

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +   VTY+++I G C+S ++ EA +LF  M+  GV P+ F Y +L+DG CK G + +A+ 
Sbjct: 719 ARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALS 778

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M+ +    +   ++ L++G  K GKL EA ++++ M    + P+   Y  +I   C
Sbjct: 779 LFLGMV-EEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHC 837

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
            +G  +EA     EM    + PN LT++  +  +N + +       +  F ++  M  R 
Sbjct: 838 TVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGR------RSEMFSLFDEMVARG 891

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  D L +S ++    K+G+  K+ ++VD+++ +G    +  ++ ++ AL     + +  
Sbjct: 892 IKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVL 951

Query: 463 ELL 465
           ++L
Sbjct: 952 KVL 954



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 170/312 (54%), Gaps = 10/312 (3%)

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           +A  N L K L K +  ++  +K+++ M      PD YTY  LIN  CR+GK+ E K + 
Sbjct: 198 LACCNSLSKDLLKGN-RVELFWKVYKGMLG-AIVPDVYTYTNLINAYCRVGKVEEGKHVL 255

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            +ME K C P +VTY+ +I GLC++  V+EA+ L   M +KG+ P+ + Y++L+DG C+ 
Sbjct: 256 FDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQ 315

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
             S++   +L  M +   +P+ V Y+ L+NG  K+  +  A ++ + M  + +K +   Y
Sbjct: 316 KRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTY 375

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393
             +I   C IG  ++A +   EM + GI P+       I+ +N +++G  K  +  +A++
Sbjct: 376 YALIHGLCKIGDLEKAEDLFSEMTMMGIKPD-------IQTYNCLIEGYYKVQNMEKAYE 428

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           + + ++  +++ ++    +++   C  GD+ ++  +  E++  G  P+   ++ ++  L 
Sbjct: 429 LLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLV 488

Query: 454 DRRKMRQAAELL 465
              +  +A ++L
Sbjct: 489 KEGRFEEAIKIL 500



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 176/379 (46%), Gaps = 43/379 (11%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G  +  +  +AM VF ++ + G  P   +Y ++++ L +E  LK AF  +  M + G
Sbjct: 623 LIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKG 682

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           I P + + N LI  LCK  G +  A ++F  +P +G   +S TY T+I G C+   + EA
Sbjct: 683 INPNIVTYNALINGLCK-LGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEA 741

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF--------------------- 249
            +LF  M+     P    Y +LI+G C++ + E+A+ LF                     
Sbjct: 742 FQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGF 801

Query: 250 -------------EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
                        E+M    + PN  TY+ L++  C  G   +A +L   M  +   PN+
Sbjct: 802 FKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNV 861

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           +TY++LL+G  + G+  E   + D M  +G+KPD   +  ++      G + +A   +D+
Sbjct: 862 LTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDD 921

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
           M+  G+   +        ++  ++  LCK  + +   +V   +  +   +   T  +L+ 
Sbjct: 922 MLSEGVNVCK-------NLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVC 974

Query: 416 CFCKKGDIHKSARIVDELV 434
           CF + G   ++ R+++ +V
Sbjct: 975 CFHRAGRTDEALRVLESMV 993



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 153/313 (48%), Gaps = 2/313 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +IS L      + A +L D + K+  +     + ++  G  ++     A
Sbjct: 647 GLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKA 706

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FD + E G      +Y T++A   +   L  AF+ +  M+ +G+ P       LI  
Sbjct: 707 RELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDG 766

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK +G  + A  +F  M   G    +  +  LI+G  +LGK+ EA +L ++M     +P
Sbjct: 767 CCK-AGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITP 824

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTYT LI   C   +++EA +LF EM+ + V PNV TY+SL+ G  + G  S+   L 
Sbjct: 825 NHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLF 884

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+++  +P+ + +S +++   KEG   +A++++D M  +G+     LY  +I   C  
Sbjct: 885 DEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKH 944

Query: 345 GKYQEAANFLDEM 357
               E    LDE+
Sbjct: 945 NNLSEVLKVLDEV 957



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 143/333 (42%), Gaps = 40/333 (12%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E D+  A  + D    +   G   +  T++ +I+ L    +   A +L D + ++     
Sbjct: 665 EGDLKAAFELHDDMCKK---GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARN 721

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + +I  GY +     +A ++F  MK  G  P    Y  ++    +    + A   + 
Sbjct: 722 SVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFL 781

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E GI    A  N LI    K  G +  A+++  +M +   TP+  TY  LI   C +
Sbjct: 782 GMVEEGIASTPA-FNALIDGFFK-LGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTV 839

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT- 263
           G I EA++LF EM+ +   P V+TYTSL++G  +     E   LF+EM ++G++P+    
Sbjct: 840 GNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAW 899

Query: 264 ----------------------------------YSSLMDGLCKGGCSSQAMELLQMMIS 289
                                             Y+ L+D LCK    S+ +++L  +  
Sbjct: 900 SVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEK 959

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           +  + ++ T  TL+    + G+  EA+ +L+ M
Sbjct: 960 QGSKLSLATCGTLVCCFHRAGRTDEALRVLESM 992



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 66/263 (25%)

Query: 248 LFEEMRSKGV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI---------- 296
            F  + S+ V   N+ T+S L   LC  G    A  +L+ MI  R+ P++          
Sbjct: 93  FFNWVNSRTVFSQNLSTFSILSLILCNSGLFGNAANVLERMIDTRN-PHVKILDSIIKCY 151

Query: 297 ------------VTYSTLLNGLCKEGKLQEAVEIL--------------------DRMK- 323
                       V +  L++   K+G L EAV +                     D +K 
Sbjct: 152 KEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKG 211

Query: 324 -------------LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
                        L  + PD   Y  +I+ +C +GK +E  + L +M   G  PN +T+S
Sbjct: 212 NRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYS 271

Query: 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
           +       V+ GLC+  D + A ++  SM N+ +  D+  Y++LI  FC++    +   +
Sbjct: 272 V-------VIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324

Query: 430 VDELVLDGCLPDEGTWSAVMTAL 452
           +DE+   G  PD   ++A++   
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGF 347



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 18/186 (9%)

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA--- 351
           N+ T+S L   LC  G    A  +L+RM +    P   +   II C+ +I     ++   
Sbjct: 106 NLSTFSILSLILCNSGLFGNAANVLERM-IDTRNPHVKILDSIIKCYKEINGSSSSSSVV 164

Query: 352 ------------NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF-QVYLSM 398
                        FL+E V   +      + + +   N++ + L K +    F +VY  M
Sbjct: 165 VFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGM 224

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
              +I  D  TY++LI  +C+ G + +   ++ ++   GC+P+  T+S V+  L     +
Sbjct: 225 LG-AIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDV 283

Query: 459 RQAAEL 464
            +A EL
Sbjct: 284 DEALEL 289


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 187/360 (51%), Gaps = 9/360 (2%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +F +MK  G  P   +Y +++  +    + + A   +  M + G+ P V + NVLI ALC
Sbjct: 260 LFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALC 319

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +G M+ A  + + M  RG +PD++TY TLI+G C  G+I +A++LF  ME+K      
Sbjct: 320 K-AGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDA 378

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           V+Y  LING C+S  + EA +L+ EM  K + P V TY++L+ GL + G    A  L   
Sbjct: 379 VSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGE 438

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M      P   TY+ LL+GLCK   L EA+E+   ++    +P   ++  +I   C   K
Sbjct: 439 MKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARK 498

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
            + A    + +   G+ PN +T+++       ++ GLCK+     A  ++L M  +  + 
Sbjct: 499 IEIARELFNRLSHEGLEPNVITYTV-------MIHGLCKSGQLENAKDLFLGMEEKGCAP 551

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +T+++L+  FC+  ++ K   ++ E+      PD  T S V+  L    K R+   LL
Sbjct: 552 NLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLL 611



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 203/388 (52%), Gaps = 17/388 (4%)

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           E+   S C+  G + R  +A  VF+ + +    P   S+ T+L  + +  +       Y+
Sbjct: 59  ENFLKSNCKS-GHIKRS-EAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYK 116

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M  IG+ P   +LN+LI   C N   +D    +  EM  RG +P++ T+ +L+ GLC  
Sbjct: 117 RMSLIGLAPDFITLNILINCYC-NLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLG 175

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG------VE 258
            +I EA  L ++M      P VVTY +L+NGLC + +   A++L EEM +        ++
Sbjct: 176 SRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIK 235

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PN+  Y +++D LCK G   +  EL   M  +   P++V YS++++G+C  G+ + A  +
Sbjct: 236 PNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGL 295

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
            + M  +G+ P+   +  +I   C  GK +EA + L  M+  G +P+  T+       NT
Sbjct: 296 FNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTY-------NT 348

Query: 379 VVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ G C +   + A  +++SM ++ I  D+++Y+ LI  +CK G + ++ ++  E++   
Sbjct: 349 LIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKE 408

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +P   T++ ++T L+   K+R A  L 
Sbjct: 409 IMPTVITYNTLLTGLFREGKVRDAWNLF 436



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 191/369 (51%), Gaps = 15/369 (4%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            + V  +M   G  P   ++ +++  L   +++  A    R M  +G +P V +   L+ 
Sbjct: 146 GLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLN 205

Query: 164 ALCKNSGTMDAAFKIFREMPNR----GCT--PDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            LC    TM  A K+  EM N     G T  P+   Y T+I+ LC+ G I + KELF EM
Sbjct: 206 GLCMTGNTM-LAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEM 264

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           + +  SP VV Y+S+I+G+C +   E A  LF EM  +GV PNV T++ L+D LCK G  
Sbjct: 265 KGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKM 324

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A  LL++MI +   P+  TY+TL++G C EG++ +A ++   M+ +G++ DA  Y  +
Sbjct: 325 EEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVL 384

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYL 396
           I+ +C  G+  EA     EM+   I P  +T+       NT++ GL +    R A+ ++ 
Sbjct: 385 INGYCKSGRMVEAKKLYREMMCKEIMPTVITY-------NTLLTGLFREGKVRDAWNLFG 437

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+   ++ +S TY+ L+   CK   + ++  +   L      P    ++ ++  L   R
Sbjct: 438 EMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKAR 497

Query: 457 KMRQAAELL 465
           K+  A EL 
Sbjct: 498 KIEIARELF 506



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 157/319 (49%), Gaps = 1/319 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  TF+++I  L  A +   A  LL  + +         + ++  G+    R  DA
Sbjct: 303 GVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDA 362

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F  M+  G E    SY  ++    +  ++  A + YR M    I P V + N L+  
Sbjct: 363 RDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTG 422

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L +  G +  A+ +F EM     TP+S TY  L++GLC+   + EA ELF  +E     P
Sbjct: 423 LFR-EGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQP 481

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           ++  +  LI+GLC+++ +E A  LF  +  +G+EPNV TY+ ++ GLCK G    A +L 
Sbjct: 482 SIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLF 541

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  K   PN+VT++TL+ G C+  ++Q+ VE+L  M  +   PDA     ++      
Sbjct: 542 LGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKD 601

Query: 345 GKYQEAANFLDEMVLGGIT 363
            KY+E  + L      G T
Sbjct: 602 EKYREYLHLLPTFPAQGQT 620



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 122/242 (50%), Gaps = 1/242 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  +++++I+    + +   A+ L   +  ++   T   + ++  G  R  +  
Sbjct: 371 SKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVR 430

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F +MK     P   +Y  +L  L + N L  A   + ++     QP +   N LI
Sbjct: 431 DAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLI 490

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +  ++ A ++F  + + G  P+  TY  +I+GLC+ G++  AK+LF  ME K C
Sbjct: 491 DGLCK-ARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGC 549

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P +VT+ +L+ G CQ+  +++ + L +EM  K   P+  T S ++D L K     + + 
Sbjct: 550 APNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLH 609

Query: 283 LL 284
           LL
Sbjct: 610 LL 611


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 198/386 (51%), Gaps = 11/386 (2%)

Query: 83  ITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           I+ D+  F  +   + R  R   A+ V  KM + G EP+  ++ ++L      N++  AF
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
                M + G +P V   N LI  LCKN G ++ A ++  EM  +G   D  TY TL+ G
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKN-GELNIALELLNEMEKKGLGADVVTYNTLLTG 220

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC  G+  +A  + ++M  ++ +P VVT+T+LI+   +  +++EA  L++EM    V+PN
Sbjct: 221 LCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPN 280

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY+S+++GLC  G    A +   +M SK   PN+VTY+TL++G CK   + E +++  
Sbjct: 281 NVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQ 340

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           RM  +G   D   Y  +I  +C +GK + A +    MV   +TP+ +T       H  ++
Sbjct: 341 RMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIIT-------HCILL 393

Query: 381 QGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GLC   +   A   +  MR     +  + Y+ +I   CK   + K+  +   L ++G  
Sbjct: 394 HGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVK 453

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           PD  T++ ++  L      R+A EL+
Sbjct: 454 PDARTYTIMILGLCKNGPRREADELI 479



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 196/391 (50%), Gaps = 13/391 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  HD  +F+++I      ++   A  +L ++ K   + +   F S+  G+  V+R  DA
Sbjct: 101 GISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDA 160

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +   M + G EP    Y T++  L +  +L +A      M + G+   V + N L+  
Sbjct: 161 FSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTG 220

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC +    DAA ++ R+M  R   PD  T+  LI+   + G + EA+EL+KEM   +  P
Sbjct: 221 LCYSGRWSDAA-RMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDP 279

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY S+INGLC    + +A + F+ M SKG  PNV TY++L+ G CK     + M+L 
Sbjct: 280 NNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLF 339

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           Q M  +    +I TY+TL++G C+ GKL+ A++I   M  + + PD   +  ++   C  
Sbjct: 340 QRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVN 399

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+ + A    D+M             + I  +N ++ GLCK D   +A++++  +    +
Sbjct: 400 GEIESALVKFDDM-------RESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             D+ TY+ +I   CK G      R  DEL+
Sbjct: 453 KPDARTYTIMILGLCKNG----PRREADELI 479



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 168/360 (46%), Gaps = 9/360 (2%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G+    R  DA  +F +M      P+   +  +L       + +    F + M   GI  
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            + S  +LI   C+ S  +  A  +  +M   G  P   T+G+L++G C + +I +A  L
Sbjct: 105 DLYSFTILIHCFCRCS-RLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
              M      P VV Y +LI+GLC++  +  A+ L  EM  KG+  +V TY++L+ GLC 
Sbjct: 164 VILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G  S A  +L+ M+ +   P++VT++ L++   K+G L EA E+   M    + P+   
Sbjct: 224 SGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAF 392
           Y  II+  C  G+  +A    D M   G  PN +T+       NT++ G CK    +   
Sbjct: 284 YNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTY-------NTLISGFCKFRMVDEGM 336

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +++  M     + D  TY++LI  +C+ G +  +  I   +V     PD  T   ++  L
Sbjct: 337 KLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGL 396



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 160/335 (47%), Gaps = 1/335 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G+  +   ++ +I  L    +   A +LL+ + K+        + ++  G     R  D
Sbjct: 170 SGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSD 229

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A R+   M +    P   ++  ++ + V++  L  A   Y+ M +  + P   + N +I 
Sbjct: 230 AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC +    DA  K F  M ++GC P+  TY TLI+G C+   + E  +LF+ M  +  +
Sbjct: 290 GLCMHGRLYDAK-KTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN 348

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             + TY +LI+G CQ   +  A+ +F  M S+ V P++ T+  L+ GLC  G    A+  
Sbjct: 349 ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVK 408

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M        IV Y+ +++GLCK  K+++A E+  R+ ++G+KPDA  Y  +I   C 
Sbjct: 409 FDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCK 468

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
            G  +EA   +  M   GI         H+  H++
Sbjct: 469 NGPRREADELIRRMKEEGIICQMNAEDDHLEEHSS 503



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 156/331 (47%), Gaps = 15/331 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           AF  +  M      P +     L+ A   N    +      ++M   G + D Y++  LI
Sbjct: 55  AFALFFEMVHSQPLPSIVDFTRLLTA-TANLRRYETVIYFSQKMELYGISHDLYSFTILI 113

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +  CR  ++  A  +  +M      P++VT+ SL++G C    + +A  L   M   G E
Sbjct: 114 HCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYE 173

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PNV  Y++L+DGLCK G  + A+ELL  M  K    ++VTY+TLL GLC  G+  +A  +
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARM 233

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L  M  + + PD   +  +I  F   G   EA     EM+   + PN +T+       N+
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY-------NS 286

Query: 379 VVQGLCKT----DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           ++ GLC      D  + F +   M ++    + +TY++LI+ FCK   + +  ++   + 
Sbjct: 287 IINGLCMHGRLYDAKKTFDL---MASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMS 343

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +G   D  T++ ++       K+R A ++ 
Sbjct: 344 CEGFNADIFTYNTLIHGYCQVGKLRVALDIF 374


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 202/372 (54%), Gaps = 10/372 (2%)

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           Y ++   L+A +    M E G      ++  +++    +     A  ++R + ++G++P 
Sbjct: 215 YCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPN 274

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + +   +I+ LCK  G++  AF++  EM  +G  P+ YT+ +LI+GLC+ G   +A  LF
Sbjct: 275 LINFTCMIEGLCKR-GSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLF 333

Query: 215 -KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            K + ++   P V+TYT++I+G C+   +  A  L   M+ +G+ PN  TY++L+DG CK
Sbjct: 334 LKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCK 393

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A +L+ +M S+   PN+ TY+ ++NGLCK G++QEA ++L+     GLKPD   
Sbjct: 394 AGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFT 453

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ 393
           Y  ++S  C     ++A    ++M+  GI P+       I  + T++   C+ +  +  +
Sbjct: 454 YNILMSEHCKQENIRQALALFNKMLKIGIQPD-------IHSYTTLIAVFCRENRMKESE 506

Query: 394 VYLSMRNR-SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++     R  I   + TY+S+I  +C++G++  + +    L   GC PD  T+ A+++ L
Sbjct: 507 MFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGL 566

Query: 453 WDRRKMRQAAEL 464
             + K  +A  L
Sbjct: 567 CKQSKRDEARSL 578



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 201/396 (50%), Gaps = 15/396 (3%)

Query: 69  AEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           A  L+   N EK C++       +   +  V R  +A+ +  +M   G  P  ++   ++
Sbjct: 122 AMSLIGNRNSEKACEVMR----CMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWII 177

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            +  E   ++ A   +  M   G+QP   S  V++   CK    ++A  K    M  RG 
Sbjct: 178 KVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEAD-KWLSVMLERGF 236

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
             D+ T+  +I+     G    A   F+ +      P ++ +T +I GLC+  S+++A  
Sbjct: 237 VVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFE 296

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL-LQMMISKRHRPNIVTYSTLLNGL 306
           + EEM  KG +PNV+T++SL+DGLCK G + +A  L L+++ S+ H+PN++TY+ +++G 
Sbjct: 297 MLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGY 356

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           C+E KL  A  +L RMK QGL P+   Y  +I   C  G ++ A + ++ M   G +PN 
Sbjct: 357 CREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNL 416

Query: 367 LTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
            T+       N +V GLCK      A+++        +  D  TY+ L++  CK+ +I +
Sbjct: 417 CTY-------NAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQ 469

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +  + ++++  G  PD  +++ ++       +M+++
Sbjct: 470 ALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKES 505



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 197/402 (49%), Gaps = 45/402 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  DN+TF+L+IS+                                  G G   R   A
Sbjct: 235 GFVVDNATFTLIISRF--------------------------------SGKGYTTR---A 259

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +  F ++ + G EP   ++  ++  L +   +K AF     M   G +P V +   LI  
Sbjct: 260 LWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDG 319

Query: 165 LCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           LCK  G  + AF++F ++  +    P+  TY  +I+G CR  K+  A+ L   M+ +   
Sbjct: 320 LCKK-GWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLV 378

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P   TYT+LI+G C++ + E A  L   M S+G  PN+ TY+++++GLCK G   +A ++
Sbjct: 379 PNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKM 438

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+       +P+  TY+ L++  CK+  +++A+ + ++M   G++PD   Y  +I+ FC 
Sbjct: 439 LEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCR 498

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
             + +E+  F +E V  GI P   T++       +++ G C+  +   A + +  + +  
Sbjct: 499 ENRMKESEMFFEEAVRIGIIPTNKTYT-------SMICGYCREGNLTLAMKFFHRLSDHG 551

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
            + DS+TY ++I+  CK+    ++  + D ++  G +P E T
Sbjct: 552 CAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVT 593



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 173/336 (51%), Gaps = 10/336 (2%)

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           E  +LK A      M   G+ P   +LN +IK +    G ++ A  +F EM  RG  PDS
Sbjct: 147 EVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIK-VTSEMGLVEYAELLFEEMCVRGVQPDS 205

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            +Y  ++   C++G I EA +    M  +       T+T +I+          A+  F  
Sbjct: 206 ISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRR 265

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +   G+EPN+  ++ +++GLCK G   QA E+L+ M+ K  +PN+ T+++L++GLCK+G 
Sbjct: 266 LVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGW 325

Query: 312 LQEAVEI-LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            ++A  + L  ++ +  KP+   Y  +IS +C   K   A   L  M   G+ PN  T++
Sbjct: 326 TEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYT 385

Query: 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                  T++ G CK  +  RA+ +   M +   S +  TY++++   CK+G + ++ ++
Sbjct: 386 -------TLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKM 438

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++   +G  PD+ T++ +M+    +  +RQA  L 
Sbjct: 439 LEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALF 474



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 7/260 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRPLDAMRVF 108
           T++ MIS     ++   AE LL R+ ++      + + ++  G+   G   R  D M + 
Sbjct: 348 TYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNL- 406

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M   G  P   +Y  ++  L +  +++ A++      + G++P   + N+L+   CK 
Sbjct: 407 --MSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQ 464

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
              +  A  +F +M   G  PD ++Y TLI   CR  ++ E++  F+E       PT  T
Sbjct: 465 E-NIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKT 523

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YTS+I G C+  ++  AM+ F  +   G  P+  TY +++ GLCK     +A  L   MI
Sbjct: 524 YTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMI 583

Query: 289 SKRHRPNIVTYSTLLNGLCK 308
            K   P  VT  TL    CK
Sbjct: 584 EKGLVPCEVTRITLAYEYCK 603



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 143/306 (46%), Gaps = 44/306 (14%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++     +G++ EA E+  EM  +   P   T   +I    +   VE A  LFEEM  +G
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRG 200

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH------------------------ 292
           V+P+  +Y  ++   CK G   +A + L +M+ +                          
Sbjct: 201 VQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRAL 260

Query: 293 -----------RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
                       PN++ ++ ++ GLCK G +++A E+L+ M  +G KP+   +  +I   
Sbjct: 261 WYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGL 320

Query: 342 CDIGKYQEAANFLDEMVLG-GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           C  G  ++A     ++V      PN LT++        ++ G C+ D  NRA  +   M+
Sbjct: 321 CKKGWTEKAFRLFLKLVRSENHKPNVLTYT-------AMISGYCREDKLNRAEMLLSRMK 373

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            + +  ++ TY++LI   CK G+  ++  +++ +  +G  P+  T++A++  L  R +++
Sbjct: 374 EQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQ 433

Query: 460 QAAELL 465
           +A ++L
Sbjct: 434 EAYKML 439



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           ++++ +AL +F+        G + D  +++ +I+     N+ + +E   +   +     T
Sbjct: 464 QENIRQALALFNKMLK---IGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPT 520

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + S+  GY R      AM+ F ++ + GC P   +Y  +++ L ++++   A   Y 
Sbjct: 521 NKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYD 580

Query: 145 HMREIGIQPCVASLNVLIKALCK 167
            M E G+ PC  +   L    CK
Sbjct: 581 SMIEKGLVPCEVTRITLAYEYCK 603


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/425 (30%), Positives = 210/425 (49%), Gaps = 15/425 (3%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIR    E  + +AL +FD    E   GF+ +  T+  +I+ L        A  LL  + 
Sbjct: 141 LIRGLCVEGKIGEALHLFDKMIDE---GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 197

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +  C     I+ SI     +  +  +A  +F +M   G  P   +Y +++  L    + K
Sbjct: 198 QGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWK 257

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                   M    I P V   + ++ ALCK  G +  A +I   M  RG  PD  TY TL
Sbjct: 258 HVTTLLNQMVNSKILPDVVIFSTVVDALCK-EGKVTEAHEIVDMMIQRGVEPDVVTYTTL 316

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++G C   ++ EA ++F  M  K  +P V++YT+LING C+   +++AM LFEEM  K  
Sbjct: 317 MDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 376

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P+  TY++LM GLC  G    A+ L   M+++   P++VTYS LL+ LCK   L+EA+ 
Sbjct: 377 IPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMA 436

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +L  ++   L PD  +Y  II   C  G+ + A +    +   G+ P+   W+ +I IH 
Sbjct: 437 LLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPS--VWTYNIMIH- 493

Query: 378 TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
               GLCK    N A ++++ M     S D  TY+++   F +  +  ++ ++++E++  
Sbjct: 494 ----GLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLAR 549

Query: 437 GCLPD 441
           G   D
Sbjct: 550 GFSAD 554



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 211/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ +I  L    +   A  L D++  E        + ++  G  +V     A
Sbjct: 130 GHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAA 189

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M++  C+P    Y +++  L ++ Q+  AF  +  M   GI P + +   L+ A
Sbjct: 190 IRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHA 249

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N         +  +M N    PD   + T+++ LC+ GK+ EA E+   M  +   P
Sbjct: 250 LC-NLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEP 308

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+L++G C    ++EA+++F+ M  KG  P+V +Y++L++G CK     +AM L 
Sbjct: 309 DVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLF 368

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P+  TY+TL+ GLC  G+LQ+A+ +   M  +G  PD   Y  ++   C  
Sbjct: 369 EEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKN 428

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
              +EA   L  +    + P+       I+++N ++ G+C+  +   A  ++ ++ ++ +
Sbjct: 429 RHLEEAMALLKAIEASNLNPD-------IQVYNIIIDGMCRAGELEAARDLFSNLSSKGL 481

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
                TY+ +I   CK+G ++++ ++  E+  + C PD  T++ +        +  +A +
Sbjct: 482 HPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQ 541

Query: 464 LL 465
           LL
Sbjct: 542 LL 543



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 189/399 (47%), Gaps = 44/399 (11%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F+++      P+   +  +L  + +             M   G+ P V +LN+LI
Sbjct: 48  DALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILI 107

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            + C +   +  AF +  ++   G  PD  T+ TLI GLC  GKI EA  LF +M  +  
Sbjct: 108 NSFC-HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGF 166

Query: 223 SPTVVTYTSLING-----------------------------------LCQSKSVEEAMR 247
            P VVTY +LING                                   LC+ + V EA  
Sbjct: 167 QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFN 226

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           LF +M  +G+ P++FTY+SL+  LC          LL  M++ +  P++V +ST+++ LC
Sbjct: 227 LFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALC 286

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           KEGK+ EA EI+D M  +G++PD   Y  ++   C   +  EA    D MV  G  P+ +
Sbjct: 287 KEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVI 346

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           +       + T++ G CK    ++A  ++  M  +    D+ TY++L+   C  G +  +
Sbjct: 347 S-------YTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDA 399

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +  E+V  G +PD  T+S ++ +L   R + +A  LL
Sbjct: 400 IALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALL 438



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 141/296 (47%), Gaps = 8/296 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T+D A   F  + +    P    +  L+  + ++        L  +M++    P V T  
Sbjct: 45  TLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN 104

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN  C    V  A  +  ++   G +P+  T+++L+ GLC  G   +A+ L   MI +
Sbjct: 105 ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 164

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN+VTY TL+NGLCK G    A+ +L  M+    +PD  +Y  II   C   +  EA
Sbjct: 165 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 224

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
            N   +MV  GI+P+  T       + ++V  LC     +     L+ M N  I  D + 
Sbjct: 225 FNLFSQMVGQGISPDIFT-------YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 277

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +S+++   CK+G + ++  IVD ++  G  PD  T++ +M     + +M +A ++ 
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF 333



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 159/342 (46%), Gaps = 39/342 (11%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           ++ V +A  +F     +   G   D  T++ ++  L +  +++    LL+++   K    
Sbjct: 218 DRQVTEAFNLFSQMVGQ---GISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPD 274

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
             IF ++     +  +  +A  + D M + G EP   +Y T++     ++++  A + + 
Sbjct: 275 VVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFD 334

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   G  P V S   LI   CK    +D A  +F EM  +   PD+ TY TL+ GLC +
Sbjct: 335 MMVRKGFAPDVISYTTLINGYCKIH-KIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHV 393

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL---------------- 248
           G++ +A  LF EM  +   P +VTY+ L++ LC+++ +EEAM L                
Sbjct: 394 GRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVY 453

Query: 249 -------------------FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
                              F  + SKG+ P+V+TY+ ++ GLCK G  ++A +L   M  
Sbjct: 454 NIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDG 513

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
               P+  TY+T+  G  +  +   A+++L+ M  +G   D+
Sbjct: 514 NDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADS 555


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 218/455 (47%), Gaps = 36/455 (7%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVH 99
           +++G +    TF+ MI+ L    + + A  + +++   + D+  D F   S+  G+ R +
Sbjct: 189 FSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI--FQFDLCPDAFTYTSLILGHCR-N 245

Query: 100 RPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           R LD A  VFD+M + GC P   +Y T++  L  E ++  A      M E GI+P V + 
Sbjct: 246 RKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTY 305

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
            V I +LC + G +D A  + R M  +GC+P   TY  +I+GL R GK+  A  ++ +M 
Sbjct: 306 TVPISSLC-DIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKML 364

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            +   P  VTY +LIN LC       A+++F+ M   G   N  TY+ ++ GL       
Sbjct: 365 KEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIE 424

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +AM +   M+     P +VTY+TL+    K G L  A   L  MK    +PD   Y ++I
Sbjct: 425 KAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELI 484

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTW----------------------------S 370
           S FC  GK   A +F  EM+  GI+PN+ T+                            S
Sbjct: 485 SGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCS 544

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
             I  +N ++ GL K +  + A +    M  + +  +++TY+SLI   CK    + + +I
Sbjct: 545 ASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKI 604

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             E+    CLP+  T+++++  L    K+  A  L
Sbjct: 605 FHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERL 639



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 227/481 (47%), Gaps = 32/481 (6%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           + ++ +    V ++I    + + AL  F   +  +   ++HD   F  M+++LV      
Sbjct: 64  RLASTLRPHHVSKIINTHINTDTALQFFYWISKRHF--YKHDMGCFVSMLNRLVKDKILA 121

Query: 68  PA-------------EDLLDRVNKEKCDITED----------IFLSICRGYGRVHRPLDA 104
           PA             ED L RV      I+             F ++    G+      A
Sbjct: 122 PADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSA 181

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             V+ ++   G +P+  ++ T++ IL ++ +++ A   +  + +  + P   +   LI  
Sbjct: 182 QNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILG 241

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+N   +D AF++F  M   GC P+S TY TLINGLC  G+I EA ++ +EM  K   P
Sbjct: 242 HCRNR-KLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEP 300

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           TV TYT  I+ LC    V++A+ L   M  KG  P+V TY++++ GL + G    A+ + 
Sbjct: 301 TVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMY 360

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+ +   PN VTY+ L+N LC EG+   A++I D M+  G   +A  Y +II     +
Sbjct: 361 HKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGM 420

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
              ++A    ++M+  G +P  +T+      +  +V+ L +   N A +    M+  +  
Sbjct: 421 DDIEKAMVVFNKMLKDGPSPTVVTY------NTLIVENLKRGYLNNATRFLYMMKESNCE 474

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D  TY  LI+ FCK G +  +     E++  G  P++ T++A++       K+  A  L
Sbjct: 475 PDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSL 534

Query: 465 L 465
            
Sbjct: 535 F 535



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 217/474 (45%), Gaps = 43/474 (9%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           + ++KA  +FD    +   G   ++ T+S +I+ L +  +   A D+L+ + ++  + T 
Sbjct: 246 RKLDKAFEVFDRMVKD---GCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTV 302

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             +         + R  DA+ +   M + GC P+ ++Y  +++ L    +++LA   Y  
Sbjct: 303 YTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHK 362

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M + G+ P   + N LI  LC   G    A KIF  M   G   ++ TY  +I GL  + 
Sbjct: 363 MLKEGLVPNTVTYNALINELC-TEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMD 421

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            I +A  +F +M     SPTVVTY +LI    +   +  A R    M+    EP+  TY 
Sbjct: 422 DIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYC 481

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            L+ G CKGG    A      M+     PN  TY+ +++G CKEGK+  A+ + +RM+  
Sbjct: 482 ELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEEN 541

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G       Y  IIS      ++ EA  F  +M   G+ PN +T++       +++ GLCK
Sbjct: 542 GCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYT-------SLINGLCK 594

Query: 386 -TDPNRAFQVYLSMRNRSI------------------SVDSL-------------TYSSL 413
            T  N AF+++  M  ++                    VD+              TYS+L
Sbjct: 595 NTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTYSTL 654

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           ++  C++G  ++++++V+ +   G  P    + +++ A     K+  A E+  L
Sbjct: 655 VSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNL 708



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 204/429 (47%), Gaps = 22/429 (5%)

Query: 34  IFDSATAEYANGFRH---------DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +F +   E A G  H         +  T++ +I++L +  +F  A  + D +        
Sbjct: 347 LFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLAN 406

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              +  I +G   +     AM VF+KM + G  PT  +Y T++   ++   L  A RF  
Sbjct: 407 AQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLY 466

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M+E   +P   +   LI   CK  G +D+A   F EM   G +P+ +TY  +I+G C+ 
Sbjct: 467 MMKESNCEPDERTYCELISGFCK-GGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKE 525

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           GKI  A  LF+ ME   CS ++ TY ++I+GL +     EA +   +M  +G++PN  TY
Sbjct: 526 GKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITY 585

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +SL++GLCK   ++ A ++   M  K   PN  TY++L+ GLC+EGK+  A    +R+  
Sbjct: 586 TSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA----ERLTE 641

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G +P    Y  ++S  C  G+  EA+  ++ M   G++P+       + I+ +++   C
Sbjct: 642 NGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPS-------MEIYCSLLVAHC 694

Query: 385 KT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K+   + A +++  M  +        Y  LI   C      ++  I   L+      D  
Sbjct: 695 KSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLI 754

Query: 444 TWSAVMTAL 452
            W+ ++  L
Sbjct: 755 VWTVLVDGL 763



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPLDAMR 106
           D  T+  +IS      +   A      +   KC I+ +   + ++  GY +  +   A+ 
Sbjct: 476 DERTYCELISGFCKGGKLDSATSFFYEM--LKCGISPNQWTYTAMIDGYCKEGKIDVALS 533

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +F++M+E GC  + ++Y  +++ L + N+   A +F   M E G+QP   +   LI  LC
Sbjct: 534 LFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLC 593

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           KN+ T + AFKIF EM  + C P+++TY +LI GLC+ GK+  A+ L +      C PT+
Sbjct: 594 KNTAT-NLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTE----NGCEPTI 648

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            TY++L++GLC+     EA +L E M+ KG+ P++  Y SL+   CK      A+E+  +
Sbjct: 649 DTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNL 708

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M  K  +P++  Y  L+  LC   + +EA+ I   +  +    D  ++  ++      G 
Sbjct: 709 MAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGD 768

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIR 374
                 FL  M     TP+  T+ +  R
Sbjct: 769 SDLCMKFLYLMESRNCTPSLHTYIILAR 796


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 214/443 (48%), Gaps = 30/443 (6%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T  ++I+     N+   A  +L ++ K         F ++ RG     +  +A+ +FDKM
Sbjct: 98  TLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKM 157

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P   +Y T++  L +      A R    M +   QP V + N +I +LCK+   
Sbjct: 158 IGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQV 217

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            +A F +F EM  +G +PD +TY +LI+ LC L +      L  EM      P VV++ +
Sbjct: 218 TEA-FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNT 276

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +++ LC+   V EA  + ++M  +GVEPNV TY++LMDG C      +A+++   M+ K 
Sbjct: 277 VVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG 336

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN+++Y+TL+NG CK  ++ +A+ +   M  Q L PD   Y  +I   C + + Q+A 
Sbjct: 337 CMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAI 396

Query: 352 NFLDEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQGL 383
               EMV     PN +T+ +                             I+++N  + G+
Sbjct: 397 ALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGM 456

Query: 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C+  +   A  ++ ++ ++ +  D  TYS +I   C++G + +++++  E+  +GC  + 
Sbjct: 457 CRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNG 516

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
             ++ +        +  +A +LL
Sbjct: 517 CIYNTITRGFLRNNETSRAIQLL 539



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 214/453 (47%), Gaps = 15/453 (3%)

Query: 6   MFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           + K   +  +A    LIR    E  + +AL +FD    E   GFR D  T+  +I+ L  
Sbjct: 122 ILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGE---GFRPDVVTYGTLINGLCK 178

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
                 A  LL  + ++ C      + +I     +  +  +A  +F +M   G  P   +
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y +++  L    + K        M +  I P V S N ++ ALCK  G +  A  +  +M
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCK-EGKVTEAHDVVDKM 297

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             RG  P+  TY  L++G C L ++ EA ++F  M  K C P V++Y +LING C+ + +
Sbjct: 298 IQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRI 357

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           ++AM LF EM  + + P+  TYS+L+ GLC       A+ L   M++    PN+VTY  L
Sbjct: 358 DKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRIL 417

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           L+ LCK   L EA+ +L  ++   L PD  +    I   C  G+ + A +    +   G+
Sbjct: 418 LDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGL 477

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            P+  T+S+       ++ GLC+    + A +++  M     +++   Y+++   F +  
Sbjct: 478 QPDVWTYSI-------MINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNN 530

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           +  ++ +++ E+V  G   D  T +  +  L D
Sbjct: 531 ETSRAIQLLQEMVARGFSADASTMTLFVKMLSD 563



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 168/333 (50%), Gaps = 9/333 (2%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N +  A   +  M  +   P     N L+ ++ K          +  +M + G  P+ YT
Sbjct: 40  NTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHH-STLLSLSHQMDSFGIPPNIYT 98

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
              LIN  C L ++  A  +  ++      P   T+T+LI G+     + EA+ LF++M 
Sbjct: 99  LHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMI 158

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            +G  P+V TY +L++GLCK G +S A+ LL  M+ K  +PN+  Y+T+++ LCK+ ++ 
Sbjct: 159 GEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVT 218

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           EA  +   M  +G+ PD   Y  +I   C++ +++  A  L+EMV   I P+ +++    
Sbjct: 219 EAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSF---- 274

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              NTVV  LCK      A  V   M  R +  + +TY++L+   C   ++ ++ ++ D 
Sbjct: 275 ---NTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDT 331

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +V  GC+P+  +++ ++      +++ +A  L 
Sbjct: 332 MVCKGCMPNVISYNTLINGYCKIQRIDKAMYLF 364


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 203/395 (51%), Gaps = 11/395 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY-GRVHRPLDAMRVFDK 110
           ++  +IS +  + +   A  L D++  +        FLS   G          A  +  K
Sbjct: 129 SYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAALLSK 188

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI-QPCVASLNVLIKALCKNS 169
             +FGC     +Y  ++ + +   +++ A   +    + G+  P V S NV+IK +CK  
Sbjct: 189 ASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCK-V 247

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTVVT 228
           G +  A ++   M   GC+PD+ T+  L+NGLCR  ++ + +E+ + ++    C P VVT
Sbjct: 248 GDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVT 307

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YTS+I+G C++  +E+AM ++ +M + G  PNV TY+ L++G  K G    A+ + Q MI
Sbjct: 308 YTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMI 367

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +R  P++VT+S+L++G C+ G+L +A++I   M    ++P+A  +  II  FC   +  
Sbjct: 368 LRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSG 427

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           EA +FL +M +      R   +    I+N V+  LCK    + A  + + M  +    D 
Sbjct: 428 EALHFLKKMNM------RTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDK 481

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
            TY+ LI   C KG I ++     ++V  GC PD 
Sbjct: 482 YTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDS 516



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 178/369 (48%), Gaps = 17/369 (4%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           +++ L      V  A+ +F+         +  D  +F+++I  +      + A +L++R+
Sbjct: 203 KLMDLFIGHGRVQDAVALFEGWIQ--GGVYSPDVWSFNVVIKGVCKVGDVQKALELVERM 260

Query: 77  NKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG-CEPTPKSYITVLAILVE 132
           ++  C    +T +I ++   G  R         V  +++  G C P   +Y +V++   +
Sbjct: 261 DEFGCSPDTVTHNILVN---GLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCK 317

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             +++ A   Y  M  +G  P V + NVLI    K +G M +A  ++++M  R C PD  
Sbjct: 318 AGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGK-AGNMGSAVAVYQQMILRRCLPDVV 376

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           T+ +LI+G CR G++ +A +++ EM      P   T+  +I+  C+     EA+   ++M
Sbjct: 377 TFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKM 436

Query: 253 RSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
             +  + P  F Y+ ++D LCKGG   +A  +L  M  K  RP+  TY+ L+ G C +G+
Sbjct: 437 NMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGR 496

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT-----PNR 366
           + EAV    +M   G  PD+ +    ISC    G   E  + +  +  GG +     P+ 
Sbjct: 497 IAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHIM-RIAAGGASSSWKDPSP 555

Query: 367 LTWSLHIRI 375
           +T S+ I +
Sbjct: 556 VTQSIDISV 564



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 165/343 (48%), Gaps = 14/343 (4%)

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            + L L    +    ++ + P   S   +I  +C+ SG    A ++F +M ++     + 
Sbjct: 105 SSTLHLFSALHSPHSQLAMPPSAHSYRYVISLMCQ-SGRHTDALQLFDQMTDQSGYFPNA 163

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            + + ++G C    + +A        ++  CS     Y  L++       V++A+ LFE 
Sbjct: 164 RFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEG 223

Query: 252 MRSKGV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
               GV  P+V++++ ++ G+CK G   +A+EL++ M      P+ VT++ L+NGLC+  
Sbjct: 224 WIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAK 283

Query: 311 KLQEAVEILDRMKLQGL-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           ++ +  E+L R++  G+  P+   Y  +IS +C  G+ ++A    ++MV  G +PN +T+
Sbjct: 284 EVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTY 343

Query: 370 SLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  N ++ G  K  +   A  VY  M  R    D +T+SSLI  +C+ G +  + +
Sbjct: 344 -------NVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMK 396

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           I  E+      P+  T+  ++      ++ R    L  L+ MN
Sbjct: 397 IWTEMAQYHIQPNAHTFCIIIHTFC--KQNRSGEALHFLKKMN 437



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 131/299 (43%), Gaps = 45/299 (15%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK- 255
           L +  C    ++    L       A  P+  +Y  +I+ +CQS    +A++LF++M  + 
Sbjct: 98  LRHAPCASSTLHLFSALHSPHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQS 157

Query: 256 GVEPNVFTYSSLMDGLC-----------------KGGCSSQAMELLQMMISKRHRPNIVT 298
           G  PN   + S + G C                 + GCS +A                  
Sbjct: 158 GYFPNA-RFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAY----------------A 200

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGL-KPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           Y+ L++     G++Q+AV + +     G+  PD   +  +I   C +G  Q+A   ++ M
Sbjct: 201 YNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERM 260

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSL-TYSSLIT 415
              G +P+ +T       HN +V GLC+  + ++  +V   ++   + + ++ TY+S+I+
Sbjct: 261 DEFGCSPDTVT-------HNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVIS 313

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            +CK G +  +  + +++V  G  P+  T++ ++        M  A  +    ++ +C+
Sbjct: 314 GYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCL 372


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 187/359 (52%), Gaps = 9/359 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  KM + G EP+  +  ++L       ++  A      M E+G +P   +   LI 
Sbjct: 139 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 198

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L  ++   +A   + R M  RGC P+  TYG ++NGLC+ G I  A  L  +ME     
Sbjct: 199 GLFLHNKASEAVALVDR-MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 257

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VV Y+++I+ LC+ +  ++A+ LF EM +KGV PNV TYSSL+  LC     S A  L
Sbjct: 258 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRL 317

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI ++  PN+VT++ L++   KEGKL EA ++ D M  + + PD   Y  +I+ FC 
Sbjct: 318 LSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 377

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             +  EA +  + M+     PN +T+       NT++ G CK    +   +++  M  R 
Sbjct: 378 HDRLDEAKHMFELMISKDCFPNVVTY-------NTLINGFCKAKRIDEGVELFREMSQRG 430

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +  +++TY++LI  F +  D   +  +  ++V DG  P+  T++ ++  L    K+ +A
Sbjct: 431 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 489



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 178/334 (53%), Gaps = 8/334 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+ ++++ L        A +LL+++   K +    I+ ++     +     DA+ +F +M
Sbjct: 227 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 286

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y ++++ L    +   A R    M E  I P V + N LI A  K  G 
Sbjct: 287 ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK-EGK 345

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A K++ EM  R   PD +TY +LING C   ++ EAK +F+ M +K C P VVTY +
Sbjct: 346 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 405

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LING C++K ++E + LF EM  +G+  N  TY++L+ G  +      A  + + M+S  
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 465

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PNI+TY+TLL+GLCK GKL++A+ + + ++   ++P    Y  +I   C  GK ++  
Sbjct: 466 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 525

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           +    + L G+ P+       + I+NT++ G C+
Sbjct: 526 DLFCSLSLKGVKPD-------VIIYNTMISGFCR 552



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 214/464 (46%), Gaps = 65/464 (14%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H+  T++++I+     +Q   A  LL ++ K   + +     S+  GY    R  DA
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + D+M E G  P   ++ T++  L   N+   A      M + G QP + +  V++  
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 165 LCKNSGTMDAAF-----------------------------------KIFREMPNRGCTP 189
           LCK  G +D AF                                    +F EM N+G  P
Sbjct: 235 LCKR-GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP 293

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +  TY +LI+ LC   +  +A  L  +M  +  +P VVT+ +LI+   +   + EA +L+
Sbjct: 294 NVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLY 353

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM  + ++P++FTYSSL++G C      +A  + ++MISK   PN+VTY+TL+NG CK 
Sbjct: 354 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKA 413

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
            ++ E VE+   M  +GL  +   Y  +I  F        A     +MV  G+ PN +T+
Sbjct: 414 KRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTY 473

Query: 370 SL----------------------------HIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           +                              I  +N +++G+CK       + ++ S+  
Sbjct: 474 NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 533

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           + +  D + Y+++I+ FC+KG   ++  +  ++  DG LPD GT
Sbjct: 534 KGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 179/364 (49%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M +    P+   +  +L+ + +  +  L       M+ +GI   + + N+LI
Sbjct: 68  DAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILI 127

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  P   T  +L+NG C   +I +A  L  +M     
Sbjct: 128 NCFCRRS-QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY 186

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +T+T+LI+GL       EA+ L + M  +G +PN+ TY  +++GLCK G    A  
Sbjct: 187 RPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 246

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M + +   N+V YST+++ LCK     +A+ +   M+ +G++P+   Y  +ISC C
Sbjct: 247 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 306

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           +  ++ +A+  L +M+   I PN +T+       N ++    K      A ++Y  M  R
Sbjct: 307 NYERWSDASRLLSDMIERKINPNVVTF-------NALIDAFVKEGKLVEAEKLYDEMIKR 359

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI  D  TYSSLI  FC    + ++  + + ++   C P+  T++ ++      +++ + 
Sbjct: 360 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEG 419

Query: 462 AELL 465
            EL 
Sbjct: 420 VELF 423



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 166/322 (51%), Gaps = 9/322 (2%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P +   N L+ A+ K     D    +  +M   G + + YTY  LIN  CR  +I  A  
Sbjct: 83  PSIFEFNKLLSAIAKMK-KFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 141

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           L  +M      P++VT +SL+NG C  K + +A+ L ++M   G  P+  T+++L+ GL 
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 201

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
               +S+A+ L+  M+ +  +PN+VTY  ++NGLCK G +  A  +L++M+   ++ +  
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVV 261

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
           +Y  +I   C      +A N   EM   G+ PN +T+S       +++  LC  +  + A
Sbjct: 262 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYS-------SLISCLCNYERWSDA 314

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            ++   M  R I+ + +T+++LI  F K+G + ++ ++ DE++     PD  T+S+++  
Sbjct: 315 SRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 374

Query: 452 LWDRRKMRQAAELLLLELMNKC 473
                ++ +A  +  L +   C
Sbjct: 375 FCMHDRLDEAKHMFELMISKDC 396



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 162/312 (51%), Gaps = 9/312 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           +S  +D A  +F  M      P  + +  L++ + ++ K      L ++M+    S  + 
Sbjct: 62  HSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLY 121

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY  LIN  C+   +  A+ L  +M   G EP++ T SSL++G C G   S A+ L+  M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           +   +RP+ +T++TL++GL    K  EAV ++DRM  +G +P+   YG +++  C  G  
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 241

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVD 406
             A N L++M    I  N       + I++TV+  LCK    + A  ++  M N+ +  +
Sbjct: 242 DLAFNLLNKMEAAKIEAN-------VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 294

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TYSSLI+C C       ++R++ +++     P+  T++A++ A     K+ + AE L 
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVE-AEKLY 353

Query: 467 LELMNKCVEAEV 478
            E++ + ++ ++
Sbjct: 354 DEMIKRSIDPDI 365


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 215/414 (51%), Gaps = 10/414 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + GF  +   F+ +I  L   ++F  A   L  +        + +  ++  G  +  +  
Sbjct: 414 SRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHS 473

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ ++ ++ E G      +   ++  L +   ++ A R  + M E G      + N LI
Sbjct: 474 DAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLI 533

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G ++  FK+  EM  +G  PD++TY  LI+G+CR+GK+ EA  L+ E +++  
Sbjct: 534 SGCCK-EGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDL 592

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TY  +I+G C++  +EE  +LF E+ ++ +E N   Y++L+   C+ G + +A +
Sbjct: 593 VPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFK 652

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M SK   P   TYS+L++G+C  G++++A  ++D M+ +GL P+   Y  +I  +C
Sbjct: 653 LHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYC 712

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
            +G+  +  N L EM    I PN++T+++       ++ G  K+ D   A ++   M  +
Sbjct: 713 KLGQMDKVVNVLQEMSSYDIHPNKITYTV-------MIDGYSKSGDMKTAAKLLHEMVGK 765

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            I  D++TY+ L   FCK+G I +  +I D +  +G   DE T++ ++   W +
Sbjct: 766 GIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHG-WQQ 818



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 204/423 (48%), Gaps = 9/423 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   ++ T + +I       Q   AE +L+ +      I    F +I        R  
Sbjct: 379 SKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFE 438

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+R   +M      P      T++  L +E +   A   +  + E G    + + N LI
Sbjct: 439 SALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALI 498

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +G M  A ++ ++M  RG   D  TY TLI+G C+ GK+ E  +L  EM  +  
Sbjct: 499 HGLCK-TGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 557

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   TY  LI+G+C+   ++EA+ L+ E +S+ + PNV+TY  ++DG CK     +  +
Sbjct: 558 EPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEK 617

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   ++++    N V Y+TL+   C+ G   EA ++ D M+ +G+ P    Y  +I   C
Sbjct: 618 LFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMC 677

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           +IG+ ++A   +DEM   G+ PN + ++        ++ G CK    ++   V   M + 
Sbjct: 678 NIGRMEDAKCLIDEMRKEGLLPNVVCYT-------ALIGGYCKLGQMDKVVNVLQEMSSY 730

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I  + +TY+ +I  + K GD+  +A+++ E+V  G +PD  T++ +        K+ + 
Sbjct: 731 DIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEG 790

Query: 462 AEL 464
            ++
Sbjct: 791 FKI 793



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 229/484 (47%), Gaps = 78/484 (16%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGYGRVHRPLDAM 105
           T + ++S LV AN+   +  + + + +    ++ D++L      + C+G G+V    DA+
Sbjct: 214 TCTFLLSSLVKANELEKSYWVFETMRQ---GVSPDVYLFSTAINAFCKG-GKVE---DAI 266

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           ++F  M++ G  P   +Y  ++  L +   L  AFRF   M + G+   + + +VLI  L
Sbjct: 267 QLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGL 326

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            K     + A  + +E   +G TP+   Y TLI+G C++G + +A  +  +M +K  +P 
Sbjct: 327 MKLE-KFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPN 385

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKG--VEPNVFT-------------------- 263
            VT  S+I G C+   +E+A  + EEM S+G  + P  FT                    
Sbjct: 386 SVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLR 445

Query: 264 -------------YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                         ++L+ GLCK G  S A+EL   ++ K    N+VT + L++GLCK G
Sbjct: 446 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTG 505

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            +QEAV +L +M  +G   D   Y  +IS  C  GK +E      EMV  GI P+  T++
Sbjct: 506 NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYN 565

Query: 371 L----------------------------HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           L                            ++  +  ++ G CK D      +++  +  +
Sbjct: 566 LLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 625

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           ++ ++S+ Y++LI  +C+ G+  ++ ++ D++   G  P   T+S+++  + +  +M  A
Sbjct: 626 NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA 685

Query: 462 AELL 465
             L+
Sbjct: 686 KCLI 689



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 220/453 (48%), Gaps = 44/453 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GFR    ++ +++  L+ +    PA  LL R+   K        L +  G  + +R ++ 
Sbjct: 107 GFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLIDRK--------LPVLFGDPK-NRHIEI 157

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR----FYRHMREIGIQPCVASLNV 160
                 + E G      + + +L  +       + FR     +R +   G+ P V +   
Sbjct: 158 ASAMADLNEVGESGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTF 217

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+ +L K +  ++ ++ +F  M  +G +PD Y + T IN  C+ GK+ +A +LF +ME  
Sbjct: 218 LLSSLVK-ANELEKSYWVFETM-RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKL 275

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             SP VVTY +LI+GLC+  +++EA R  E+M   GV   + TYS L++GL K    ++A
Sbjct: 276 GVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEA 335

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             +L+  + K   PN V Y+TL++G CK G L +A+ I   M  +G+ P++     II  
Sbjct: 336 NSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQG 395

Query: 341 FCDIGKYQEAANFLDEMVLGG--ITPNRLTWSLHIRIHN--------------------- 377
           FC IG+ ++A   L+EM+  G  I P   T  +H    N                     
Sbjct: 396 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 455

Query: 378 -----TVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
                T+V GLCK   +  A +++  +  +    + +T ++LI   CK G++ ++ R++ 
Sbjct: 456 DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 515

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +++  G + D+ T++ +++      K+ +  +L
Sbjct: 516 KMLERGFVLDKITYNTLISGCCKEGKVEEGFKL 548



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 34/225 (15%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+ +MI     A++    E L   +  +  ++   ++ ++ R Y R    ++A ++ D M
Sbjct: 598 TYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDM 657

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---- 167
           +  G  PT  +Y +++  +    +++ A      MR+ G+ P V     LI   CK    
Sbjct: 658 RSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQM 717

Query: 168 ------------------------------NSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                                          SG M  A K+  EM  +G  PD+ TY  L
Sbjct: 718 DKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVL 777

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
            NG C+ GKI E  ++   M  +      +TYT+L++G  Q  ++
Sbjct: 778 TNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQPSAL 822


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 197/364 (54%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A++V+ +M   G +P+ K+Y  ++  L      +        M+ IG++P + +  + I
Sbjct: 218 EALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICI 277

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           +AL + +  +D A+ IF+EM + GC PD  TY  LI+ LC  GK+ +AKEL+ +M   + 
Sbjct: 278 RALGR-ARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSH 336

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP  VTY +L++   +   +E   R + EM   G  P+V TY+ L++ LCK G   +A +
Sbjct: 337 SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFD 396

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +L +M +K   PN+ TY+T++ GL K  +L EA+E+L+ M+  G+KP A  Y   I  + 
Sbjct: 397 MLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYG 456

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G   +A +  + M   GI P+       I   N  +  L +T   + A  ++  +   
Sbjct: 457 KSGDPAKAIDTFETMKKRGIMPS-------IAACNASLYTLAETGRISEAEDIFNDLHKC 509

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +S DS+TY+ L+ C+ K G I K+ +++ E++  GC PD    ++++  L+   ++  A
Sbjct: 510 GLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAA 569

Query: 462 AELL 465
            ++ 
Sbjct: 570 WKMF 573



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 142  FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            F +  + +GI P + S N L+  L  ++ T + A ++F +M + G  P+++TY  L++  
Sbjct: 783  FDKFTKNLGIHPTLESYNCLMDGLLGSNFT-EKALELFEDMKSAGTHPNNFTYNLLLDAH 841

Query: 202  CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
             +  +I +  +L+ EM ++ C P  +T+  +I+ L +S ++ +A+ L+ E+ S    P  
Sbjct: 842  GKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTP 901

Query: 262  FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             TY  L+DGL K G S QAM++ + M+     PN V Y+ L+NG  K G++  A E+  +
Sbjct: 902  CTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKK 961

Query: 322  MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
            M  +G++PD   Y  ++ C C  G+  EA  + +E+ L G+ P+ +++       N ++ 
Sbjct: 962  MVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSY-------NFIIN 1014

Query: 382  GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            GL K+   + A  ++  M+NR IS D  TY++LI      G +  + ++ +EL L G  P
Sbjct: 1015 GLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEP 1074

Query: 441  DEGTWSAVM 449
               T++A++
Sbjct: 1075 SVFTYNALI 1083



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 191/368 (51%), Gaps = 14/368 (3%)

Query: 85   EDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
            + + L + +   +  + LDA  VFDK  K  G  PT +SY  ++  L+  N  + A   +
Sbjct: 760  DHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELF 819

Query: 144  RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
              M+  G  P   + N+L+ A  K S  ++  + ++ EM +RGC P++ T+  +I+ L +
Sbjct: 820  EDMKSAGTHPNNFTYNLLLDAHGK-SKRINKLYDLYSEMRSRGCEPNAITHNIIISALVK 878

Query: 204  LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
               + +A +L+ E+ +   SPT  TY  LI+GL ++   E+AM++FEEM   G  PN   
Sbjct: 879  SNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVI 938

Query: 264  YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            Y+ L++G  K G    A EL + M+ +  RP++ +Y+ L+  LC  G++ EAV+  + +K
Sbjct: 939  YNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELK 998

Query: 324  LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS---LHIRIHNTVV 380
            L GL PD   Y  II+      +  EA +   EM   GI+P+  T++   LH+ I   V 
Sbjct: 999  LTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKV- 1057

Query: 381  QGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
                    + A ++Y  ++   +     TY++LI      G+  ++  +  ++++ GC P
Sbjct: 1058 --------DVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSP 1109

Query: 441  DEGTWSAV 448
            +  T++ +
Sbjct: 1110 NTETFAQL 1117



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 213/448 (47%), Gaps = 16/448 (3%)

Query: 29  NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88
           N+AL ++    +E   G +    T+S ++  L      R   +LL+ +  +   +  +I+
Sbjct: 217 NEALKVYKRMISE---GMKPSMKTYSALMVALGRRGDTRKIMNLLEEM--KSIGLRPNIY 271

Query: 89  -LSIC-RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
             +IC R  GR  R  DA  +F +M + GC P   +Y  ++  L    +L  A   Y  M
Sbjct: 272 TYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKM 331

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           R     P   +   L+    K  G ++   + + EM   G  PD  TY  LI  LC+ G 
Sbjct: 332 RASSHSPDRVTYITLMDKFGK-VGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGD 390

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A ++   M TK   P + TY ++I GL +++ ++EA+ L E M S GV+P  F+Y  
Sbjct: 391 VDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVL 450

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            +D   K G  ++A++  + M  +   P+I   +  L  L + G++ EA +I + +   G
Sbjct: 451 FIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCG 510

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L PD+  Y  ++ C+   G+  +A   L EM+  G  P+       + I N+++  L K 
Sbjct: 511 LSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPD-------VMIINSLINTLYKA 563

Query: 387 D-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              + A++++  ++N  ++   +TY+ L+T   K+G I K+  +   +   GC P+  T+
Sbjct: 564 GRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITF 623

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++++  L     +  A ++     M  C
Sbjct: 624 NSLLDCLSKNDAVDLALKMFCRMTMMNC 651



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 166/321 (51%), Gaps = 7/321 (2%)

Query: 104  AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            A+ +F+ MK  G  P   +Y  +L    +  ++   +  Y  MR  G +P   + N++I 
Sbjct: 815  ALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIIS 874

Query: 164  ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            AL K S  ++ A  ++ E+ +   +P   TYG LI+GL + G+  +A ++F+EM    C 
Sbjct: 875  ALVK-SNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCG 933

Query: 224  PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            P  V Y  LING  +S  ++ A  LF++M  +G+ P++ +Y+ L++ LC  G   +A++ 
Sbjct: 934  PNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQY 993

Query: 284  LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             + +      P+ V+Y+ ++NGL K  +L EA+ +   MK +G+ PD   Y  +I     
Sbjct: 994  FEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGI 1053

Query: 344  IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
             GK   A    +E+ L G+ P+  T++  IR H+         + ++AF V+  M     
Sbjct: 1054 AGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHS------LSGNKDQAFSVFKKMMVVGC 1107

Query: 404  SVDSLTYSSLITCFCKKGDIH 424
            S ++ T++ L   + + G +H
Sbjct: 1108 SPNTETFAQLPNKYPRAGLVH 1128



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 169/337 (50%), Gaps = 3/337 (0%)

Query: 34   IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
            +FD  T     G      +++ ++  L+ +N    A +L + +           +  +  
Sbjct: 782  VFDKFTKNL--GIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLD 839

Query: 94   GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
             +G+  R      ++ +M+  GCEP   ++  +++ LV+ N L  A   Y  +      P
Sbjct: 840  AHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSP 899

Query: 154  CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
               +   LI  L K +G  + A KIF EM + GC P+S  Y  LING  + G+I  A EL
Sbjct: 900  TPCTYGPLIDGLLK-AGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACEL 958

Query: 214  FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            FK+M  +   P + +YT L+  LC +  ++EA++ FEE++  G++P+  +Y+ +++GL K
Sbjct: 959  FKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGK 1018

Query: 274  GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                 +A+ L   M ++   P++ TY+ L+  L   GK+  AV++ + ++L GL+P    
Sbjct: 1019 SRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFT 1078

Query: 334  YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            Y  +I      G   +A +   +M++ G +PN  T++
Sbjct: 1079 YNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFA 1115



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/525 (23%), Positives = 233/525 (44%), Gaps = 72/525 (13%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +++ +    DV++A  + D  T +   G   +  T++ MI  L+ A +   A +L
Sbjct: 376 VTYTILIEALCKSGDVDRAFDMLDVMTTK---GIFPNLHTYNTMICGLLKARRLDEALEL 432

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L+ +       T   ++     YG+   P  A+  F+ MK+ G  P+  +    L  L E
Sbjct: 433 LENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAE 492

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             ++  A   +  + + G+ P   + N+L+K   K +G +D A ++  EM ++GC PD  
Sbjct: 493 TGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSK-AGQIDKATQLLSEMISKGCEPDVM 551

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
              +LIN L + G++  A ++F  ++    +PTVVTY  L+ GL +   + +A+ LF  M
Sbjct: 552 IINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSM 611

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
              G  PN  T++SL+D L K      A+++   M      P+++TY+T++ GL +EG++
Sbjct: 612 TESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRI 671

Query: 313 QEAVEILDRMKLQGLKPD------------------------------------AGLYGK 336
             A     +MK + L PD                                    +  +G+
Sbjct: 672 DYAFWFFHQMK-KFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGE 730

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITP-------------------------NRLTWSL 371
           ++ C     + +EA +F + +V   +                           ++ T +L
Sbjct: 731 LMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNL 790

Query: 372 HIR----IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
            I      +N ++ GL  ++   +A +++  M++     ++ TY+ L+    K   I+K 
Sbjct: 791 GIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKL 850

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
             +  E+   GC P+  T + +++AL     + +A + L  ELM+
Sbjct: 851 YDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALD-LYYELMS 894



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 211/469 (44%), Gaps = 48/469 (10%)

Query: 52   TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            T++++++ L    +   A +L   + +  C      F S+     +      A+++F +M
Sbjct: 587  TYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRM 646

Query: 112  KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
                C P   +Y T++  L+ E ++  AF F+  M++  + P   +L  LI  + ++ G 
Sbjct: 647  TMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKF-LSPDYVTLCTLIPGVVRH-GR 704

Query: 172  MDAAFKIFREMPNRGCTP------------------------------------DSYTYG 195
            ++ A K+  E  ++ C                                      D +   
Sbjct: 705  VEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVML 764

Query: 196  TLINGLCRLGKIYEAKELF-KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
             LI  LC+  K  +A+ +F K  +     PT+ +Y  L++GL  S   E+A+ LFE+M+S
Sbjct: 765  PLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKS 824

Query: 255  KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             G  PN FTY+ L+D   K    ++  +L   M S+   PN +T++ +++ L K   L +
Sbjct: 825  AGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNK 884

Query: 315  AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
            A+++   +      P    YG +I      G+ ++A    +EM+  G  PN +       
Sbjct: 885  ALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSV------- 937

Query: 375  IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            I+N ++ G  K+ + + A +++  M    I  D  +Y+ L+ C C  G I ++ +  +EL
Sbjct: 938  IYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEEL 997

Query: 434  VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
             L G  PD  +++ ++  L   R++ +A   L  E+ N+ +  ++   N
Sbjct: 998  KLTGLDPDTVSYNFIINGLGKSRRLDEALS-LFSEMKNRGISPDLYTYN 1045



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 199/425 (46%), Gaps = 11/425 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            +G+  D  T++++I  L  +     A D+LD +  +        + ++  G  +  R  
Sbjct: 368 VDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLD 427

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ + + M+  G +PT  SY+  +    +      A   +  M++ GI P +A+ N  +
Sbjct: 428 EALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASL 487

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L + +G +  A  IF ++   G +PDS TY  L+    + G+I +A +L  EM +K C
Sbjct: 488 YTLAE-TGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGC 546

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V+   SLIN L ++  V+ A ++F  +++  + P V TY+ L+ GL K G   +A+E
Sbjct: 547 EPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALE 606

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M      PN +T+++LL+ L K   +  A+++  RM +    PD   Y  II    
Sbjct: 607 LFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLI 666

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G+   A  F  +M    ++P+ +T         T++ G+ +      A +V +   ++
Sbjct: 667 REGRIDYAFWFFHQMK-KFLSPDYVTLC-------TLIPGVVRHGRVEDAIKVVMEFVHQ 718

Query: 402 S-ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + +  +S  +  L+ C   + +I ++    + LV +    D+     ++  L  R+K   
Sbjct: 719 ACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALD 778

Query: 461 AAELL 465
           A  + 
Sbjct: 779 AQNVF 783



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 174/388 (44%), Gaps = 45/388 (11%)

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           K K  ++E+  ++I +     +      ++  ++  F       +Y+  L IL E+ +++
Sbjct: 91  KNKTSVSEEEVMTILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYM--LEILREQRRIE 148

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                +  M++  I   + +   + KAL    G   A F + R+M   G   ++Y+Y  L
Sbjct: 149 DMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFAL-RKMTEVGFILNAYSYNGL 207

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+ L   G   EA +++K M ++   P++ TY++L+  L +     + M L EEM+S G+
Sbjct: 208 IH-LLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGL 266

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PN++TY+  +  L +      A  + + M  +   P+++TY+ L++ LC  GKL +A E
Sbjct: 267 RPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKE 326

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +  +M+     PD   Y  ++  F  +G  +    F +EM + G  P             
Sbjct: 327 LYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAP------------- 373

Query: 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
                                       D +TY+ LI   CK GD+ ++  ++D +   G
Sbjct: 374 ----------------------------DVVTYTILIEALCKSGDVDRAFDMLDVMTTKG 405

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             P+  T++ ++  L   R++ +A ELL
Sbjct: 406 IFPNLHTYNTMICGLLKARRLDEALELL 433


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 175/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRJAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 292 LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 352 EVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPDARTYTMIINEFCKKG 401

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K  +++ E+  DG +P   T++ +M  
Sbjct: 402 DVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 101/268 (37%), Positives = 158/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 221 GLCKES-KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 340 RKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   +    L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGXKLLKEMQRDGHVPSVVTYNV 427



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 201/429 (46%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH    +  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 15  FRHTLHXYCTMIHFLCTHQMLSEAKSLIQVVVSRK-------------GKG------SAS 55

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E     T +S J V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 56  AVFAAIXE--TXGTQRSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKV 113

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 114 LEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAI 168

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 229 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 288

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D + AF+   
Sbjct: 289 IYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYT-------TLIDGCCKEGDLDSAFEHRK 341

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD  T++ ++     + 
Sbjct: 342 RMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKG 401

Query: 457 KMRQAAELL 465
            + +  +LL
Sbjct: 402 DVWKGXKLL 410



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 147/287 (51%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++  +PD  TY TLI GLC+ G + +A  L  EM  K   P  +TYT+L
Sbjct: 264 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 324 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMN 430


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 218/454 (48%), Gaps = 66/454 (14%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G  R  +  DA++VFD+M + G  P   +Y T++   V+   L+  FR    M   G
Sbjct: 22  VIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDG 81

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL------------- 197
            +P + + NVL+  LC+ +G MD    +  EM +    PD +TY  L             
Sbjct: 82  PKPNIVTYNVLLSGLCR-AGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTM 140

Query: 198 ----------------------INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
                                 +NGLC+ GK+ +A+++ + +      PT V Y +LING
Sbjct: 141 LSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLING 200

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            CQ + +  A  +FE+M+S+ + P+  TY++L++GLCK    ++A +L+  M      P+
Sbjct: 201 YCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPS 260

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           + T++TL++     G+L++   +L  M+ +G+K D   +G ++  FC  GK  EA   LD
Sbjct: 261 VETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILD 320

Query: 356 EMVLGGITPNRLTW----------------------------SLHIRIHNTVVQGLCKTD 387
           +M+   + PN   +                            S  I  +N +++GLC++ 
Sbjct: 321 DMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSS 380

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A ++  ++RN+ +  D ++Y+++I+  C KGD  K+  ++ E+   G  P   T+ 
Sbjct: 381 QIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYH 440

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
            +++AL    ++    E L  ++++K VE    I
Sbjct: 441 TLVSALASAGRVHD-MECLYQQMLHKNVEPSSSI 473



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 187/366 (51%), Gaps = 10/366 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   SY  V+A L    +   A + +  M ++G+ P   + N +I    K  G ++A F+
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVK-GGDLEAGFR 72

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  +M + G  P+  TY  L++GLCR G++ E + L  EM + +  P   TY+ L +GL 
Sbjct: 73  LRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLT 132

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           ++      + LF E   KGV    +T S L++GLCK G  ++A ++L+M++     P  V
Sbjct: 133 RTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTV 192

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            Y+TL+NG C+   L+ A  I ++MK + ++PD   Y  +I+  C +    +A + + EM
Sbjct: 193 IYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 252

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
              G+ P+  T++  I  + T  Q        + F V   M+ + I  D +++ S++  F
Sbjct: 253 EKSGVDPSVETFNTLIDAYGTAGQ------LEKCFTVLSDMQQKGIKSDVISFGSVVKAF 306

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM-NKCVEA 476
           CK G I ++  I+D+++     P+   +++++ A  +     QA   LL+E M N  V A
Sbjct: 307 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQA--FLLVEKMKNSGVSA 364

Query: 477 EVDIQN 482
            +   N
Sbjct: 365 SIVTYN 370



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 159/322 (49%), Gaps = 1/322 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T S++++ L    +   AE +L+ +       T  I+ ++  GY +V     A  +F++M
Sbjct: 158 TCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM 217

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K     P   +Y  ++  L +   +  A      M + G+ P V + N LI A    +G 
Sbjct: 218 KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAY-GTAGQ 276

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++  F +  +M  +G   D  ++G+++   C+ GKI EA  +  +M  K  +P    Y S
Sbjct: 277 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 336

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+   +S   E+A  L E+M++ GV  ++ TY+ L+ GLC+     +A EL+  + ++ 
Sbjct: 337 IIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 396

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            RP++V+Y+T+++  C +G   +A+E+L  M   G++P    Y  ++S     G+  +  
Sbjct: 397 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDME 456

Query: 352 NFLDEMVLGGITPNRLTWSLHI 373
               +M+   + P+   + + +
Sbjct: 457 CLYQQMLHKNVEPSSSIYGIMV 478



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 138/263 (52%), Gaps = 1/263 (0%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M++ G +P+ +++ T++       QL+  F     M++ GI+  V S   ++KA CKN 
Sbjct: 251 EMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN- 309

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A  I  +M  +   P++  Y ++I+     G   +A  L ++M+    S ++VTY
Sbjct: 310 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 369

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             L+ GLC+S  ++EA  L   +R++G+ P+V +Y++++   C  G + +A+ELLQ M  
Sbjct: 370 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 429

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              RP + TY TL++ L   G++ +   +  +M  + ++P + +YG ++  +       +
Sbjct: 430 YGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSK 489

Query: 350 AANFLDEMVLGGITPNRLTWSLH 372
            A+   EM   GI  +    S H
Sbjct: 490 VASLKKEMSEKGIAFDDTKRSNH 512



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 127/283 (44%), Gaps = 4/283 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +D+  A  IF+   + +    R D+ T++ +I+ L        AEDL+  + K   D + 
Sbjct: 205 RDLRGAFCIFEQMKSRH---IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSV 261

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           + F ++   YG   +      V   M++ G +    S+ +V+    +  ++  A      
Sbjct: 262 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 321

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M    + P     N +I A  + SG  + AF +  +M N G +    TY  L+ GLCR  
Sbjct: 322 MIYKDVAPNAQVYNSIIDAYIE-SGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSS 380

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +I EA+EL   +  +   P VV+Y ++I+  C     ++A+ L +EM   G+ P + TY 
Sbjct: 381 QIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYH 440

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           +L+  L   G       L Q M+ K   P+   Y  +++   +
Sbjct: 441 TLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVR 483


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 231/473 (48%), Gaps = 35/473 (7%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +  + +++++   K ++KA+ IF    A       H    ++ MI  L+   ++    
Sbjct: 154 TPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAH---AYNSMIIMLMHEGEYEKVH 210

Query: 71  DLLDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           +L + ++ E +C      + ++   + ++ R   A+ + ++MK+ G +PT K Y  ++A+
Sbjct: 211 ELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMAL 270

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L + + +  A   +  MR    +P V +   LI+ L K +G +D A+  F EM   GC P
Sbjct: 271 LFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGK-AGRLDEAYNFFHEMRREGCRP 329

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRL 248
           D+     +IN L + G++ +A +LF+EMET  C P+VVTY ++I  L +SKS V E    
Sbjct: 330 DTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSW 389

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           FE M+  G+ P+ FTYS L+DG CK   + +AM LL+ M  K   P    Y +L++ L K
Sbjct: 390 FERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 449

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
             +   A E+   +K       A +Y  +I      G+  +A +  DEM   G TPN   
Sbjct: 450 AKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYA 509

Query: 369 WSL----------------------------HIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
           ++                              I  +N ++  L KT  P+RA  +  +M+
Sbjct: 510 YNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMK 569

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             +I  D+++Y++++      G   ++A+++ E+   G   D  T+S+++ A+
Sbjct: 570 QSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAI 622



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 167/379 (44%), Gaps = 42/379 (11%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG +     ++++++ L   +    A  L + +  + C      +  + RG G+  R  +
Sbjct: 255 NGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDE 314

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A   F +M+  GC P       ++  L +  +L  A + +  M  +   P V + N +IK
Sbjct: 315 AYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIK 374

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL ++   +      F  M   G +P  +TY  LI+G C+  +  +A  L +EM+ K   
Sbjct: 375 ALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFP 434

Query: 224 PTVVTYTSLINGLCQSK-----------------------------------SVEEAMRL 248
           P    Y SLI+ L ++K                                    +++A+ L
Sbjct: 435 PCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDL 494

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F+EM   G  PNV+ Y++LM GL + G   +A+  ++ M      P+I +Y+ +LN L K
Sbjct: 495 FDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAK 554

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G    A+ +L  MK   +KPDA  Y  ++      G ++EAA  + EM   G   + +T
Sbjct: 555 TGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLIT 614

Query: 369 WSLHIRIHNTVVQGLCKTD 387
           +S       ++++ + K D
Sbjct: 615 YS-------SILEAIGKVD 626



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 204/497 (41%), Gaps = 95/497 (19%)

Query: 6   MFKWST-----------KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW             K+    V ++++ +  V+  +  F  A  +    + HD ST+ 
Sbjct: 66  IFKWGPDAEKALEVLMMKVDHWLVREVMKTDVGVSVKMQFFRWAARK--RNYEHDTSTYM 123

Query: 55  LMISKLVSANQFRPAEDLL-DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
            +I  L    Q+     ++ + V    C +T      I R  G       A+ +F ++K 
Sbjct: 124 ALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKA 183

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
             C+PT  +Y +++ +L+ E                                    G  +
Sbjct: 184 RKCQPTAHAYNSMIIMLMHE------------------------------------GEYE 207

Query: 174 AAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
              +++ EM N G C PD+ TY  LI+  C+LG+   A  L  EM+     PT   YT L
Sbjct: 208 KVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTML 267

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           +  L +  +V  A+ LFEEMR +   P+VFTY+ L+ GL K G   +A      M  +  
Sbjct: 268 MALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGC 327

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII-SCFCDIGKYQEAA 351
           RP+ V  + ++N L K G+L +A+++ + M+     P    Y  II + F    +  E +
Sbjct: 328 RPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEIS 387

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR--------------------- 390
           ++ + M   GI+P+  T+S+       ++ G CKT+                        
Sbjct: 388 SWFERMKGSGISPSPFTYSI-------LIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAY 440

Query: 391 ---------------AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
                          A +++  ++    S  +  Y+ +I    K G +  +  + DE+  
Sbjct: 441 CSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNR 500

Query: 436 DGCLPDEGTWSAVMTAL 452
            GC P+   ++A+M+ L
Sbjct: 501 LGCTPNVYAYNALMSGL 517


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 195/423 (46%), Gaps = 42/423 (9%)

Query: 79  EKCDITEDIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           E   I+ D++   ++   Y +V     A +V ++M+E GC     +Y T++  L     +
Sbjct: 235 EGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAI 294

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNS--------------------------- 169
           + AF + + M + G+ P   +   +I  LCK                             
Sbjct: 295 EEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTL 354

Query: 170 -------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
                  G  D AFKI +EM   G  P+  TY  LI GLC+LG++  A  + K+M     
Sbjct: 355 IDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGY 414

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               +TY  +I G  +  + EEA  L  EMR  G+ PNV+TYS +++GLC+ G S +A  
Sbjct: 415 MADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASG 474

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ MI+   +PN   Y+ L++G C+EG    A E L +M  + L PD   Y  +I    
Sbjct: 475 LLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLS 534

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           ++GK  EA  + DEM+  G  PN  T+     IH   + G    +  +A Q+   M N  
Sbjct: 535 NVGKMDEAIEYYDEMLEKGFQPNDFTYG--GLIHGYSMAG----NLEKAEQLLHQMLNSG 588

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           ++ +   Y+ ++  + K  ++ K +  +  ++  G +PD   +  V+  L     M+ A 
Sbjct: 589 LNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAV 648

Query: 463 ELL 465
            +L
Sbjct: 649 SVL 651



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 209/455 (45%), Gaps = 60/455 (13%)

Query: 44  NGF-RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           +GF R  N+  +  I K +SA   +P +   D + +  C +            GR+ R  
Sbjct: 356 DGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKL------------GRMGR-- 401

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A R+  +M + G      +Y  V+   + ++  + AF     MR+ GI P V + +++I
Sbjct: 402 -ASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIII 460

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+  G  + A  +  +M   G  P+++ Y  LI+G CR G    A E  K+M  +  
Sbjct: 461 NGLCQ-IGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENL 519

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P +  Y SLI GL     ++EA+  ++EM  KG +PN FTY  L+ G    G   +A +
Sbjct: 520 TPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQ 579

Query: 283 LLQMMISKRHRPNIVTYSTLLNG-----------------------------------LC 307
           LL  M++    PN   Y+ +L G                                   L 
Sbjct: 580 LLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLS 639

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
             G +Q AV +L  ++  GL PD+ +YG +IS FC     ++A   LDEM   GI P   
Sbjct: 640 SSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPG-- 697

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
                I  +N ++ G CK+D  + A  ++ S+  + +  + +TY++LI  +CK GDI  +
Sbjct: 698 -----ISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDA 752

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             + +E++ +G  PD   +S +     +   ++QA
Sbjct: 753 IDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQA 787



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 193/379 (50%), Gaps = 12/379 (3%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           D+ +   +  GRV    D   V   MK+ G  P+ +    +L  L+  + L L ++    
Sbjct: 177 DVLVDTYKKTGRVR---DGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGF 233

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   GI P V + + LI+A CK    +++A K+  EM   GC+ +  TY TLI GLCR G
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVR-DLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAG 292

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            I EA    KEME     P   TY ++INGLC+    ++A  L +EM   G+ PNV  YS
Sbjct: 293 AIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYS 352

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG  + G + +A ++++ M +   +PN +TY  L+ GLCK G++  A  IL +M   
Sbjct: 353 TLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKI 412

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G   D   Y  +I         +EA   L+EM  GGI+PN  T+S+       ++ GLC+
Sbjct: 413 GYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSI-------IINGLCQ 465

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             +  RA  +   M    +  ++  Y+ LI+ +C++G    +   + ++  +   PD   
Sbjct: 466 IGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYC 525

Query: 445 WSAVMTALWDRRKMRQAAE 463
           +++++  L +  KM +A E
Sbjct: 526 YNSLIIGLSNVGKMDEAIE 544



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 171/324 (52%), Gaps = 15/324 (4%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M+++G+ P +   N L+K L +    +D  +K+   M   G +PD YTY TLI   C++ 
Sbjct: 199 MKDLGLAPSLRCCNGLLKDLLRAD-ALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVR 257

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            +  AK++ +EM    CS  VVTY +LI GLC++ ++EEA    +EM   G+ P+ FTY 
Sbjct: 258 DLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYG 317

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           ++++GLCK G   QA  LL  M      PN+V YSTL++G  ++G   EA +I+  M   
Sbjct: 318 AIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAA 377

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL----HIRIHNTVVQ 381
           G++P+   Y  +I   C +G+   A+  L +M   G   + +T++L    H+R HN    
Sbjct: 378 GVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNK--- 434

Query: 382 GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
                    AF +   MR   IS +  TYS +I   C+ G+  +++ ++++++ DG  P+
Sbjct: 435 -------EEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPN 487

Query: 442 EGTWSAVMTALWDRRKMRQAAELL 465
              ++ +++          A E L
Sbjct: 488 AFVYAPLISGYCREGSFSLACETL 511



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 190/394 (48%), Gaps = 14/394 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHR 100
           A+G + +   ++ +IS       F  A + L ++ +E  ++T D++   S+  G   V +
Sbjct: 481 ADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRE--NLTPDLYCYNSLIIGLSNVGK 538

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A+  +D+M E G +P   +Y  ++        L+ A +    M   G+ P       
Sbjct: 539 MDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQ 598

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +++   K S  ++      + M  +G  PD+  YG +I+ L   G +  A  +   +E  
Sbjct: 599 ILEGYFK-SDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKN 657

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  + Y SLI+G C++  +E+A+ L +EM  KG+EP +  Y++L+DG CK    S A
Sbjct: 658 GLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHA 717

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             +   +I K   PN VTY+TL++G CK G +++A+++ + M  +G+ PDA +Y  + + 
Sbjct: 718 RNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAG 777

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MR 399
             + G  Q+A    +EM+  G           I   NT+V G CK    +    +L  M 
Sbjct: 778 CSNSGDLQQALFITEEMIARGYA--------IISSFNTLVHGFCKRGKLQETVKFLHVMM 829

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           ++ I    LT  +++    + G + ++  I  EL
Sbjct: 830 DKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVEL 863



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 145/284 (51%), Gaps = 9/284 (3%)

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            L++   + G++ +  E+   M+    +P++     L+  L ++ +++   ++   M   
Sbjct: 178 VLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGA 237

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G+ P+V+TYS+L++  CK      A ++++ M       N+VTY+TL+ GLC+ G ++EA
Sbjct: 238 GISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEA 297

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
                 M+  GL PD   YG II+  C  G+  +A   LDEM   G+ PN + +S     
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYS----- 352

Query: 376 HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             T++ G  +  + + AF++   M    +  + +TY +LI   CK G + +++RI+ ++ 
Sbjct: 353 --TLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMT 410

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
             G + D  T++ V+     R+  ++ A LLL E+    +   V
Sbjct: 411 KIGYMADTMTYNLVIEGHL-RQHNKEEAFLLLNEMRKGGISPNV 453



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 18/283 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D+  +  +IS    A     A  LLD + K+  +     + ++  G+ +      
Sbjct: 657 NGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISH 716

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F+ +   G  P   +Y T++    +   ++ A   Y  M   G+ P     +VL  
Sbjct: 717 ARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVL-A 775

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A C NSG +  A  I  EM  RG    S ++ TL++G C+ GK+ E  +    M  K   
Sbjct: 776 AGCSNSGDLQQALFITEEMIARGYAIIS-SFNTLVHGFCKRGKLQETVKFLHVMMDKDIV 834

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P+++T  +++ GL ++  + EA  +F E++ K         +S  D       +     L
Sbjct: 835 PSLLTVENIVIGLGEAGKLSEAHTIFVELQQKN--------ASHRD-------TDHLSSL 879

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
              MI++   P  V ++ ++   CK+G L +A+ + D +  +G
Sbjct: 880 FTDMINQGLVPLDVIHN-MIQSHCKQGYLDKALMLHDALVAKG 921


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 202/373 (54%), Gaps = 11/373 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++ +  + D++KAL   D   A    GF+ +  ++  +I+ L    Q + A ++
Sbjct: 140 ITLTTLIKGLCLKGDIHKALHFHDKVLAL---GFQLNQVSYRTLINGLCKVGQTKAALEM 196

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L R++ +   +   ++ +I  G  +     DA   + +M      PT  +Y T++  L  
Sbjct: 197 LRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCI 256

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             QLK A      M    I P V + ++L+ A CK  G +  A  +F  M  +   P+  
Sbjct: 257 MGQLKDAIGLLHKMILENINPTVYTFSILVDAFCK-EGKVKEAKNVFVVMMKKDVKPNIV 315

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +L+NG C + ++ +A+ +F  M     +P V +Y+ +I+G C+ K V+EAM+LFEEM
Sbjct: 316 TYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEM 375

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             K + P+V TY+SL+DGLCK G  S A++L+  M  +   PNI+TY++LL+ LCK   +
Sbjct: 376 HCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHV 435

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            +A+E+L ++K   ++P    Y  +I+  C  G+ ++A    +++++ G       +++ 
Sbjct: 436 DKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNG-------YNID 488

Query: 373 IRIHNTVVQGLCK 385
           +  +NT+++G CK
Sbjct: 489 VYTYNTMIKGFCK 501



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 187/369 (50%), Gaps = 9/369 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +  VF  + + G EP   +  T++  L  +  +  A  F+  +  +G Q    S   LI 
Sbjct: 123 SFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLIN 182

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G   AA ++ R +  +    D   Y T+I+G+C+   + +A + + EM  K   
Sbjct: 183 GLCK-VGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRIC 241

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PTVVTY +LI GLC    +++A+ L  +M  + + P V+T+S L+D  CK G   +A  +
Sbjct: 242 PTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNV 301

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M+ K  +PNIVTY++L+NG C   ++ +A  I + M   G+ PD   Y  +IS FC 
Sbjct: 302 FVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCK 361

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           I    EA    +EM    I P+ +T+       N+++ GLCK+   + A ++   M +R 
Sbjct: 362 IKMVDEAMKLFEEMHCKQIFPDVVTY-------NSLIDGLCKSGRISYALKLIGEMHDRG 414

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              + +TY+SL+   CK   + K+  ++ +L      P   T++ ++  L    +++ A 
Sbjct: 415 QPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQ 474

Query: 463 ELLLLELMN 471
           ++    L+N
Sbjct: 475 KVFEDVLVN 483



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 182/352 (51%), Gaps = 11/352 (3%)

Query: 117 EPTPK--SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
            PTP    +  +L  LV+ N   +    +R M   GI   + +L++LI    +  G    
Sbjct: 64  NPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQ-LGHNSL 122

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           +F +F  +  +G  PD+ T  TLI GLC  G I++A     ++         V+Y +LIN
Sbjct: 123 SFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLIN 182

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           GLC+    + A+ +   +  K V  +V  Y++++DG+CK    + A +    M++KR  P
Sbjct: 183 GLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICP 242

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
            +VTY+TL+ GLC  G+L++A+ +L +M L+ + P    +  ++  FC  GK +EA N  
Sbjct: 243 TVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVF 302

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
             M+   + PN +T+       N+++ G C  +  N+A  ++ +M    ++ D  +YS +
Sbjct: 303 VVMMKKDVKPNIVTY-------NSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIM 355

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I+ FCK   + ++ ++ +E+      PD  T+++++  L    ++  A +L+
Sbjct: 356 ISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLI 407



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 177/329 (53%), Gaps = 9/329 (2%)

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           L+F  + ++ + G +P   +L  LIK LC   G +  A     ++   G   +  +Y TL
Sbjct: 122 LSFSVFSNILKKGYEPDAITLTTLIKGLCL-KGDIHKALHFHDKVLALGFQLNQVSYRTL 180

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           INGLC++G+   A E+ + ++ K     VV Y ++I+G+C+ K V +A   + EM +K +
Sbjct: 181 INGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRI 240

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P V TY++L+ GLC  G    A+ LL  MI +   P + T+S L++  CKEGK++EA  
Sbjct: 241 CPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKN 300

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +   M  + +KP+   Y  +++ +C + +  +A +  + M   G+ P+  ++S+      
Sbjct: 301 VFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSI------ 354

Query: 378 TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++ G CK    + A +++  M  + I  D +TY+SLI   CK G I  + +++ E+   
Sbjct: 355 -MISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDR 413

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G  P+  T+++++ AL     + +A ELL
Sbjct: 414 GQPPNIITYNSLLDALCKNHHVDKAIELL 442



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 193 TYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           +Y +  N      +++     F  +   K  +P+++ +  ++  L ++      + L  +
Sbjct: 35  SYSSFSNSTTLYSQLHNLVSSFNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQ 94

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M   G+  N+ T S L++   + G +S +  +   ++ K + P+ +T +TL+ GLC +G 
Sbjct: 95  MEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGD 154

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           + +A+   D++   G + +   Y  +I+  C +G+ + A   L  +        +L   L
Sbjct: 155 IHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRI------DGKLV-RL 207

Query: 372 HIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
            + ++NT++ G+CK    N AF  Y  M  + I    +TY++LI   C  G +  +  ++
Sbjct: 208 DVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLL 267

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            +++L+   P   T+S ++ A     K+++A  + ++ +M K V+  +   N
Sbjct: 268 HKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVV-MMKKDVKPNIVTYN 318


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 204/390 (52%), Gaps = 11/390 (2%)

Query: 79  EKCDITEDIFLS--ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           + C I+ D++    +  G+ +       + + ++MK    EP+  SY ++   L ++   
Sbjct: 352 KSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLS 411

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
            ++   +R +   G +    + ++LIK  C   G +D+A K+  EM      PD   + +
Sbjct: 412 DISLDIFRDLGAAGYKYDQTAYSILIKGFCM-QGDLDSAHKLMEEMVRNNLAPDPSNFES 470

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L++G C++G    A E F  M      P++ T   +I+  C+   VEEA+ L  EM+++G
Sbjct: 471 LVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQG 530

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           + PN+FTY+++++ LCK   S +A+EL  +M+ +   P++V YSTL++G  K+   Q+A+
Sbjct: 531 IFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKAL 590

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            +  RM   G+ PD   Y  +I+  C   +  EA N   +M   G+TP++++++      
Sbjct: 591 MLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYT------ 644

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            +V+ G C+  D  +A+ ++  M  R      +TY+SL+  +CK   I  +  ++DE+  
Sbjct: 645 -SVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKR 703

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G  PD  T++ ++ A   R  + +A E+L
Sbjct: 704 KGITPDVVTYNVLIAAHRRRGNLDKALEML 733



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 216/480 (45%), Gaps = 54/480 (11%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           L+ + KD  +++++FD                  L+I    + +    A D+  +  K  
Sbjct: 168 LLESPKDAARSVIVFD------------------LLIKVFAANSMLENAVDVFLQAKKTG 209

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN------ 134
            +++      + +     +R      +F++MK  G  P   +Y  ++    + N      
Sbjct: 210 LELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADI 269

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
             + A      M   G  P V + +  I  LC+  G +++A    R + +     + Y Y
Sbjct: 270 DTRQATEILEEMERNGESPTVVTYSTYIYGLCR-VGYVESALDFVRSLISANGLVNVYCY 328

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
             +I+GLC+ G++ EA ++ +EM++   SP V TY+ LI+G C+   VE+ + L EEM+ 
Sbjct: 329 NAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKY 388

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             +EP++ +YSSL  GLCK   S  ++++ + + +  ++ +   YS L+ G C +G L  
Sbjct: 389 SNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDS 448

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A ++++ M    L PD   +  ++  FC +G +  A  F + M+ GGI P+  T ++ I 
Sbjct: 449 AHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIID 508

Query: 375 IH----------------------------NTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
            H                            N V+  LCK     RA +++  M  R++  
Sbjct: 509 AHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLP 568

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             + YS+LI  F K+ +  K+  +   ++  G  PD   ++ ++  L  R +M +A  L 
Sbjct: 569 SVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLF 628



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 163/329 (49%), Gaps = 1/329 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G+++D + +S++I           A  L++ + +         F S+  G+ ++   +
Sbjct: 423 AAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWV 482

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+  F+ M E G  P+  +   ++     E +++ A      M+  GI P + + N +I
Sbjct: 483 NALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVI 542

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK   + + A ++F  M  R   P    Y TLI+G  +     +A  L+  M     
Sbjct: 543 NRLCKERKS-ERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGV 601

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P +V YT LIN LC    + EA  LF++M   G+ P+  +Y+S++ G C+ G   +A  
Sbjct: 602 TPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWA 661

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M+ + H P +VTY++L++G CK  ++  A  ++D MK +G+ PD   Y  +I+   
Sbjct: 662 LFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHR 721

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSL 371
             G   +A   L+EM   G+ P+ +T+ +
Sbjct: 722 RRGNLDKALEMLNEMKENGVLPDHMTYMM 750



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 116/210 (55%), Gaps = 2/210 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +F  M +    P+   Y T++    +++  + A   Y  M +IG+ P + +  +LI 
Sbjct: 554 ALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILIN 613

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC  S  M  A+ +F++M   G TPD  +Y ++I G CR+G + +A  LF EM  +   
Sbjct: 614 ILCHRS-RMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHL 672

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PTVVTYTSL++G C+   ++ A  L +EM+ KG+ P+V TY+ L+    + G   +A+E+
Sbjct: 673 PTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEM 732

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           L  M      P+ +TY  +L  L K  KL+
Sbjct: 733 LNEMKENGVLPDHMTY-MMLEWLLKAKKLK 761



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 91/214 (42%), Gaps = 5/214 (2%)

Query: 263 TYSSLMDGLCK-GGCSSQAMELLQMMIS--KRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
            Y+ L D +C     +  A EL  +++   K    +++ +  L+        L+ AV++ 
Sbjct: 143 VYALLRDIVCYYNKVNLDAFELFPILLESPKDAARSVIVFDLLIKVFAANSMLENAVDVF 202

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
            + K  GL+        ++ C  +  + +   +  +EM   G  PN  T+++ +  +   
Sbjct: 203 LQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKG 262

Query: 380 VQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             G    D  +A ++   M     S   +TYS+ I   C+ G +  +   V  L+    L
Sbjct: 263 NFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGL 322

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            +   ++A++  L  + ++ +A  L +LE M  C
Sbjct: 323 VNVYCYNAIIHGLCKKGELDEA--LKVLEEMKSC 354


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/507 (26%), Positives = 239/507 (47%), Gaps = 52/507 (10%)

Query: 16  AQVLQLIRAEKDVNKA-----LVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           A +  L RA  DV +A     + +F+      A     + +T+ ++I       +   A 
Sbjct: 60  ASIFDLNRALSDVARASPAVAISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAF 119

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDKMKEFGCEPTPKSYITVLAI 129
             + RV      ++  +F  + +G     R  DAM  V  +M E GC+P   SY  +L  
Sbjct: 120 ATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKG 179

Query: 130 LVEENQLKLAFRFYRHMREI-GIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
           L ++   + A      M +  G  P  V +   +I  L +  G +D A+ +F  M +RG 
Sbjct: 180 LCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLR-EGQLDKAYSLFDAMLDRGP 238

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           +PD  TY ++I+ L +   + +A ++F  M      P  + YTSL++G C S   +EA+ 
Sbjct: 239 SPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIG 298

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +F++M   GVEP+V TY++LMD LCK G S++A ++   ++ + H+P+  TY TLL+G  
Sbjct: 299 IFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYA 358

Query: 308 KEGKLQEAVEILD-----------------------------------RMKLQGLKPDAG 332
            EG L E  ++LD                                    M+ QGL PD  
Sbjct: 359 TEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIV 418

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            YG ++   C  G+  +A +  + +   G+ PN       I +  T++ GLC  D  ++ 
Sbjct: 419 NYGTVLDILCTAGRVDDALSQFNSLKSEGLAPN-------IVVFTTLIHGLCTCDKWDKV 471

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            ++   M +R I +D++ +++++   CKKG + ++  + D +V  G  P+  T++ ++  
Sbjct: 472 EELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDG 531

Query: 452 LWDRRKMRQAAELLLLELMNKCVEAEV 478
                KM +A +LL + + N    ++V
Sbjct: 532 YCLDGKMDEAMKLLGVMVFNGVKPSDV 558



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 191/422 (45%), Gaps = 47/422 (11%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +    V+  +  E  ++KA  +FD   A    G   D  T+S +IS L        A  +
Sbjct: 208 VAYTTVINGLLREGQLDKAYSLFD---AMLDRGPSPDVVTYSSIISALSKTQAMDKATQV 264

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
             R+ K        ++ S+  GY    +P +A+ +F KM   G EP   +Y  ++  L +
Sbjct: 265 FTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCK 324

Query: 133 ENQLKLAFRFYRHMREIGIQPCVAS----------------------------------- 157
             +   A + +  + + G +P   +                                   
Sbjct: 325 NGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHI 384

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N+++ A  K++  +D A  +F  M  +G  PD   YGT+++ LC  G++ +A   F  +
Sbjct: 385 FNMIMGAYAKHN-KVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSL 443

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           +++  +P +V +T+LI+GLC     ++   L  EM  +G+  +   ++++M  LCK G  
Sbjct: 444 KSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRV 503

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A  L  +M+     PN  TY+TL++G C +GK+ EA+++L  M   G+KP    Y  I
Sbjct: 504 IEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTI 563

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYL 396
           I+ +   G+ ++    L EM   G+ P  +T+ +       ++QGL +      A ++YL
Sbjct: 564 INGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEM-------LLQGLFQAGRTVAAKELYL 616

Query: 397 SM 398
            M
Sbjct: 617 RM 618



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 150/315 (47%), Gaps = 1/315 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++ ++  L    +   A  + D + K         + ++  GY      ++
Sbjct: 306 HGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVE 365

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              + D M + G +     +  ++    + N++  A   + +MR+ G+ P + +   ++ 
Sbjct: 366 MHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLD 425

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC  +G +D A   F  + + G  P+   + TLI+GLC   K  + +EL  EM  +   
Sbjct: 426 ILC-TAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGIC 484

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              + + +++  LC+   V EA  LF+ M   G+EPN  TY++L+DG C  G   +AM+L
Sbjct: 485 LDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKL 544

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+    +P+ VTY+T++NG  + G++++ + +L  M  +G+ P    Y  ++     
Sbjct: 545 LGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQ 604

Query: 344 IGKYQEAANFLDEMV 358
            G+   A      M+
Sbjct: 605 AGRTVAAKELYLRMI 619



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 46/262 (17%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV---EPNVFTYS 265
           +A ++F  +  +    ++      ++ + ++ S   A+ LF  M   G     PN+ TY 
Sbjct: 45  DAHQVFDRLLKRGDRASIFDLNRALSDVARA-SPAVAISLFNRMPRAGATSAAPNIATYG 103

Query: 266 SLMDGLCKG-GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMK 323
            ++ G C+  G    A   +  +I+   R + + +S LL GLC   +  +A++I L RM 
Sbjct: 104 IVI-GCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMP 162

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G KPD   Y  ++   CD    Q+A + L                 HI   +   +G 
Sbjct: 163 ELGCKPDLFSYTILLKGLCDDKTSQQALDLL-----------------HIMADH---KGR 202

Query: 384 CKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           C                    +D + Y+++I    ++G + K+  + D ++  G  PD  
Sbjct: 203 C-------------------PLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVV 243

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           T+S++++AL   + M +A ++ 
Sbjct: 244 TYSSIISALSKTQAMDKATQVF 265


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 218/450 (48%), Gaps = 30/450 (6%)

Query: 4   KTMFKWSTKITSAQVLQ-LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           K +   ST +T  +V   L++ +KD   +L  F+    E  N   H   T S+++  L  
Sbjct: 48  KKLTSLSTHLTPFRVKHILLKIQKDHVLSLEFFNWVQTE--NPSSHTLETHSMILHILTK 105

Query: 63  ANQFRPAE------------DLLDRV------NKEKCDITEDIFLSICRGYGRVHRPLDA 104
             +F+ AE            DL D++      +   CD +  +F S+ +    + +  +A
Sbjct: 106 NRKFKSAELILKSVLVKGFIDLPDKLFEAILYSYRMCDSSPRVFDSLFKTLAHMKKFRNA 165

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              F +MK +G  PT +S    L+ L++ +++ +A  FY+ MR   I P V + N++++A
Sbjct: 166 TDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTRNMVMRA 225

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK SG ++ A ++F EM + G +P+  +Y TLI G CR G +  A +L   M  K    
Sbjct: 226 FCK-SGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEA 284

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVT+ SLI+G C+   + EA ++F EM+   V PN  TY++L++G  + G S     L 
Sbjct: 285 NVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLY 344

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M     + +I+TY+ L+ GLCKEGK ++A  ++  +  + L P+A  +  +IS  C  
Sbjct: 345 EEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIR 404

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
                A      MV  G  PN  T+       N +V   CK  D   AF V + M  R  
Sbjct: 405 NNSDRAFQLYKSMVRIGCHPNEQTF-------NMLVSAFCKNEDFEGAFLVLMEMFERCF 457

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           +  S   S +    C  G  H + ++  EL
Sbjct: 458 TPGSDVLSEIYHGLCCCGKEHLAMKLSSEL 487



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 150/298 (50%), Gaps = 10/298 (3%)

Query: 170 GTMDAAFKIFREM--PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           G +D   K+F  +    R C      + +L   L  + K   A + F +M+     PTV 
Sbjct: 123 GFIDLPDKLFEAILYSYRMCDSSPRVFDSLFKTLAHMKKFRNATDTFLQMKGYGFLPTVE 182

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +  + ++ L     V+ A+  ++EMR   + PNV+T + +M   CK G   +A+++ + M
Sbjct: 183 SCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEM 242

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
            S    PN  +Y+TL+ G C++G L  AV++ + M+ +G++ +   +  +I  FC  GK 
Sbjct: 243 ESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKL 302

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD 406
            EA+    EM +  + PN +T+       NT++ G  +  +     ++Y  M    +  D
Sbjct: 303 HEASKVFSEMKVLNVAPNTITY-------NTLINGHSQMGNSEMGRRLYEEMSRNGVKAD 355

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            LTY++LI   CK+G   K+A +V EL  +  +P+  T+SA+++    R    +A +L
Sbjct: 356 ILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQL 413



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 148/346 (42%), Gaps = 53/346 (15%)

Query: 34  IFDS--ATAEYANGFRHDNSTFSLM-----ISKLVSANQFRPAEDLLDRVN------KE- 79
           +FDS   T  +   FR+   TF  M     +  + S N +  +   L RV+      KE 
Sbjct: 148 VFDSLFKTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEM 207

Query: 80  -KCDITEDIFLS--ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
            +C I+ +++    + R + +  +   A++VF++M+  G  P   SY T++     +  L
Sbjct: 208 RRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLL 267

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM------PN------ 184
             A +    MR  G++  V + N LI   CK  G +  A K+F EM      PN      
Sbjct: 268 NSAVKLKNSMRAKGVEANVVTFNSLIDGFCK-EGKLHEASKVFSEMKVLNVAPNTITYNT 326

Query: 185 -----------------------RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
                                   G   D  TY  LI GLC+ GK  +A  + KE++ + 
Sbjct: 327 LINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKEN 386

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P   T+++LI+G C   + + A +L++ M   G  PN  T++ L+   CK      A 
Sbjct: 387 LVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEGAF 446

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
            +L  M  +   P     S + +GLC  GK   A+++   +K + +
Sbjct: 447 LVLMEMFERCFTPGSDVLSEIYHGLCCCGKEHLAMKLSSELKARHM 492


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 172/316 (54%), Gaps = 9/316 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKD-GDIRVAQSVFNAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 166 GLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LC++G L++A +++D M ++GLKPD   Y  +I   C  G  + A      M+   I  +
Sbjct: 286 LCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            + ++        ++ GLC+      A +V   M +  +  D++TY+ +I  FCKKGD+ 
Sbjct: 346 DVGYT-------ALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVW 398

Query: 425 KSARIVDELVLDGCLP 440
             ++++ E+  DG +P
Sbjct: 399 TGSKLLKEMQRDGQMP 414



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 155/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VF+ + ++G  P+  S+ T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 155 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM ++G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEH 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  + + V Y+ L++GLC+EG+  +A ++L  M   GLKPD   Y  II+ FC 
Sbjct: 334 RKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGQMPSVVT 418



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 202/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 9   FRHTLDSYCTMIHLLCTHQMLSEAKSLIQVVVSRK-------------GKG------SAS 49

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 50  AVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKV 107

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 108 LEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAI 162

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV++ +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKM 222

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 223 DDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D   AF+   
Sbjct: 283 IYGLCRKGDLKQARDLIDEMSMKGLKPDKITYT-------TLIDGXCKEGDLETAFEHRK 335

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD  T++ ++     + 
Sbjct: 336 RMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKG 395

Query: 457 KMRQAAELL 465
            +   ++LL
Sbjct: 396 DVWTGSKLL 404


>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 567

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 186/365 (50%), Gaps = 10/365 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+RV + M   G  P   SY  ++  L +   +  A +    M + G      + N L+K
Sbjct: 116 AIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVK 175

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC + G ++ + +    +  +G  P+++TY +L+    +   + EA  L  E+  K   
Sbjct: 176 GLCMH-GNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQ 234

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P +V+Y  L+ GLC+   +EEA+RLF+ + SKG  PNV +Y+ L+  LC  G   +A EL
Sbjct: 235 PNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANEL 294

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M  +   P+IVTY+ L+  L   GK+++A++++D M +   KP A  Y  II+  C 
Sbjct: 295 LAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCK 354

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
            GK +   N LD+M+ G  +PN  T++         +  LC +     AF +  S+ N+ 
Sbjct: 355 EGKVEAVVNCLDQMIFGRCSPNEGTFN--------AIAVLCYEGKVQEAFSLIQSLGNKQ 406

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
            S     Y  +++C CKKG+ + +  ++ E+   G  PD  T+S+++  L     + +A 
Sbjct: 407 NSSIHDYYKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAM 466

Query: 463 ELLLL 467
           E+  L
Sbjct: 467 EIFKL 471



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 49/336 (14%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           AF     +   G  PD      L+  LC+  K+ +A  + + M +    P   +YT L+N
Sbjct: 81  AFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVN 140

Query: 235 GLCQSKSVEEAMRLFEEMR-----------------------------------SKGVEP 259
            LC+  +V  AM+L E+M                                     KG+ P
Sbjct: 141 HLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVP 200

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           N FTYSSL++   K    ++AM LL  +I+K  +PN+V+Y+ LL GLCKEG+++EA+ + 
Sbjct: 201 NAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLF 260

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI---RIH 376
             +  +G  P+   Y  ++   C  G+++EA   L EM     +P+ +T+++ I     H
Sbjct: 261 KNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFH 320

Query: 377 NTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
             + Q         A QV   M        + +Y+ +I   CK+G +      +D+++  
Sbjct: 321 GKIEQ---------ALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFG 371

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
            C P+EGT++A+    ++ +   Q A  L+  L NK
Sbjct: 372 RCSPNEGTFNAIAVLCYEGKV--QEAFSLIQSLGNK 405



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 156/362 (43%), Gaps = 35/362 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G+  +  T++ ++  L        +   LDR+ ++        + S+     +     +
Sbjct: 161 SGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNE 220

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AMR+ D++   G +P   SY  +L  L +E +++ A R ++++   G  P V S N+L++
Sbjct: 221 AMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLR 280

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LC   G  + A ++  EM  R  +P   TY  LI  L   GKI +A ++  EM      
Sbjct: 281 SLCY-EGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFK 339

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT-------------------- 263
           PT  +Y  +I  LC+   VE  +   ++M      PN  T                    
Sbjct: 340 PTATSYNPIIARLCKEGKVEAVVNCLDQMIFGRCSPNEGTFNAIAVLCYEGKVQEAFSLI 399

Query: 264 --------------YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
                         Y  ++  LCK G +  A  LL  M      P+  TYS+L+ GLC E
Sbjct: 400 QSLGNKQNSSIHDYYKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIE 459

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G L EA+EI   ++    +PD   +  +I  FC   +   +    + M+  G TP+  T+
Sbjct: 460 GMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTY 519

Query: 370 SL 371
           ++
Sbjct: 520 TI 521



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 150/304 (49%), Gaps = 11/304 (3%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN---KEKC 81
           E  + +A+ +F +  ++   GF  +  ++++++  L    ++  A +LL  +N   +   
Sbjct: 250 EGRIEEAIRLFKNLPSK---GFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPS 306

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
            +T +I +     +G++ +   A++V D+M     +PT  SY  ++A L +E +++    
Sbjct: 307 IVTYNILIGSLAFHGKIEQ---ALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVN 363

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
               M      P   + N  I  LC   G +  AF + + + N+  +     Y  +++ L
Sbjct: 364 CLDQMIFGRCSPNEGTFNA-IAVLCY-EGKVQEAFSLIQSLGNKQNSSIHDYYKGVVSCL 421

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+ G  Y A  L  EM     +P   TY+SLI GLC    + EAM +F+ +      P++
Sbjct: 422 CKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDI 481

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             +++L+ G CK   +  ++E+ +MMI K + P+  TY+ L+ G+  E + + A E+L  
Sbjct: 482 DNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAAEVLRE 541

Query: 322 MKLQ 325
           + L+
Sbjct: 542 LHLR 545



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 161/351 (45%), Gaps = 13/351 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
            T + +L+    E+ VN+A+ + D   A+   G + +  +++++++ L    +   A  L
Sbjct: 203 FTYSSLLEAAYKERGVNEAMRLLDEIIAK---GGQPNLVSYNVLLTGLCKEGRIEEAIRL 259

Query: 73  LDRVNKEKCD---ITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
              +  +      ++ +I L S+C   GR     +A  +  +M      P+  +Y  ++ 
Sbjct: 260 FKNLPSKGFSPNVVSYNILLRSLCYE-GRWE---EANELLAEMNGRERSPSIVTYNILIG 315

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            L    +++ A +    M     +P   S N +I  LCK  G ++A      +M    C+
Sbjct: 316 SLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCK-EGKVEAVVNCLDQMIFGRCS 374

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  T+   I  LC  GK+ EA  L + +  K  S     Y  +++ LC+  +   A  L
Sbjct: 375 PNEGTFNA-IAVLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKGVVSCLCKKGNTYPAFLL 433

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             EM   G  P+ +TYSSL+ GLC  G   +AME+ +++    +RP+I  ++ L+ G CK
Sbjct: 434 LYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCK 493

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
             +   ++E+ + M  +G  P    Y  ++       + + AA  L E+ L
Sbjct: 494 SHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAAEVLRELHL 544



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 114/225 (50%), Gaps = 8/225 (3%)

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           + +A    E +   G +P+V   + L+  LCK     +A+ +++MMIS    P+  +Y+ 
Sbjct: 78  ISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTF 137

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L+N LCK G +  A++++++M+  G   +   Y  ++   C  G   ++  FLD ++  G
Sbjct: 138 LVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKG 197

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           + PN  T+S       ++++   K    N A ++   +  +    + ++Y+ L+T  CK+
Sbjct: 198 LVPNAFTYS-------SLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKE 250

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G I ++ R+   L   G  P+  +++ ++ +L    +  +A ELL
Sbjct: 251 GRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELL 295


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 197/391 (50%), Gaps = 17/391 (4%)

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+F   ++  GY R +  LDA R    +      P   +Y  ++ +L +  ++  A    
Sbjct: 110 DVFAYNTLVAGYCR-YGHLDAARRL--IGSMPVAPDAYTYTPLIRVLCDRGRVADALSLL 166

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M   G QP V +  VL++A+C+NSG  + A  +  EM  +GCTP+  TY  +ING+CR
Sbjct: 167 DDMLRRGCQPNVVTYTVLLEAMCRNSG-FEQAMAVLDEMRAKGCTPNIVTYNVIINGMCR 225

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G++ +A+EL   + +    P  V+YT+L+ GLC SK  ++   LF EM  K   PN  T
Sbjct: 226 EGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVT 285

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +  L+   C+GG   +A+++L+ M       N    + ++N +CK+G++ +A ++L+ M 
Sbjct: 286 FDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMG 345

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G  PD   Y  ++   C   ++ +A   L+EMV     PN +T+       NT +  L
Sbjct: 346 SYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTF-------NTFICIL 398

Query: 384 C-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C K    +A  +   M     +V  +TY++L+  FC +G I  +  +   +    C P+ 
Sbjct: 399 CQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNT 455

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            T++ ++T L +  ++  AAEL+   L   C
Sbjct: 456 ITYTTLLTGLCNAERLDGAAELVAEMLRGDC 486



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 218/426 (51%), Gaps = 20/426 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSI-CRGYGRVHR 100
           GF+ D  +++ ++  L ++ ++   E+L   + ++ C   ++T D+ +   CRG G V R
Sbjct: 243 GFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRG-GMVER 301

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A++V ++M E GC         V+  + ++ ++  AF+    M   G  P   S   
Sbjct: 302 ---AIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTT 358

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++K LC+ +   D A ++  EM    C P+  T+ T I  LC+ G I +A  L ++M   
Sbjct: 359 VLKGLCR-AERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEH 417

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C+  VVTY +L+NG C    ++ A+ LF  M  K   PN  TY++L+ GLC       A
Sbjct: 418 GCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDGA 474

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            EL+  M+     PN+VT++ L++  C++G L+EA+E++++M   G  P+   Y  ++  
Sbjct: 475 AELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDG 534

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
                  ++A   L  +V  G++P+ +T+S       +++  L K D    A Q++  ++
Sbjct: 535 ITKDCSSEDALELLHGLVSKGVSPDVITFS-------SIIGILSKEDRIEEAVQLFHVVQ 587

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +  +   ++ Y+ ++   CK+ +I  +      +V +GC+P+E T+  ++  L     ++
Sbjct: 588 DIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLK 647

Query: 460 QAAELL 465
           +A +LL
Sbjct: 648 EAQDLL 653



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 185/358 (51%), Gaps = 9/358 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V +A+ + +  T    +G   + +  +++I+ +    +   A  LL+ +    C+     
Sbjct: 299 VERAIQVLEQMTE---HGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTIS 355

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++ +G  R  R  DA  + ++M    C P   ++ T + IL ++  ++ A      M 
Sbjct: 356 YTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMS 415

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G    V + N L+   C   G +D+A ++FR MP   C P++ TY TL+ GLC   ++
Sbjct: 416 EHGCTVGVVTYNALVNGFCV-QGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERL 471

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A EL  EM    C P VVT+  L++  CQ   +EEA+ L E+M   G  PN+ TY++L
Sbjct: 472 DGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTL 531

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG+ K   S  A+ELL  ++SK   P+++T+S+++  L KE +++EAV++   ++  G+
Sbjct: 532 LDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGM 591

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           +P A +Y KI+   C   +   A +F   MV  G  PN  T+   I I     +GL K
Sbjct: 592 RPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYI--ILIEGLAHEGLLK 647



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 165/330 (50%), Gaps = 12/330 (3%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P V     LI+ LC+   T DAA ++ R     G   D + Y TL+ G CR G +  
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAA-RVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDA 129

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A+ L   M     +P   TYT LI  LC    V +A+ L ++M  +G +PNV TY+ L++
Sbjct: 130 ARRLIGSMPV---APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLE 186

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            +C+     QAM +L  M +K   PNIVTY+ ++NG+C+EG++ +A E+L+R+   G +P
Sbjct: 187 AMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQP 246

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-P 388
           D   Y  ++   C   ++ +      EM+     PN +T+ + IR         C+    
Sbjct: 247 DTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRF-------FCRGGMV 299

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
            RA QV   M     + ++   + +I   CK+G +  + ++++++   GC PD  +++ V
Sbjct: 300 ERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTV 359

Query: 449 MTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +  L    +   A ELL   + N C   EV
Sbjct: 360 LKGLCRAERWDDAKELLNEMVRNNCPPNEV 389


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 208/429 (48%), Gaps = 18/429 (4%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G   + ST + ++  L    Q   A  L   +       T      + RG+    R  
Sbjct: 60  SSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVR 119

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ----LKLAFRFYRHMREIGIQPCVASL 158
           DA+     M++        +Y  VL  L  EN+    L+ A  F++ M+  G++P + S 
Sbjct: 120 DALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESY 179

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           ++L+ AL  +SG M  A  +F  M    C+PD  TY  L++G C++G+ YEA+ L KE+ 
Sbjct: 180 HILLSAL-SDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEIL 235

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P V TY+ +IN  C+   VEEA  +F +M      PN  T+++L+ G CK G   
Sbjct: 236 KAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLE 295

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKE-GKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            A++L   M     +  IVTY+TL++ LCK+ G +  AV++ ++++  GL P    Y  +
Sbjct: 296 DAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSL 355

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYL 396
           I  FCD  +  EA  + DEM  G   PN +T+S+       ++ GLCK    + A +   
Sbjct: 356 IQGFCDARRLSEAMQYFDEME-GKCAPNVITYSI-------LIDGLCKVRRMKEAAKTLE 407

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+    +   +TY  LI  FCK G++  +    +++ L GC P+   ++ ++  L    
Sbjct: 408 DMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAE 467

Query: 457 KMRQAAELL 465
           +      LL
Sbjct: 468 RANDGLRLL 476



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 171/336 (50%), Gaps = 11/336 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T+++++       Q   A+ L+  + K   +     +  I   Y ++ +  +A  VF
Sbjct: 207 DIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVF 266

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            KM E  C P   ++ T++A   +   L+ A + +  M +IG +  + + N LI +LCK 
Sbjct: 267 MKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKK 326

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A  +F ++   G TP   TY +LI G C   ++ EA + F EME K C+P V+T
Sbjct: 327 RGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVIT 385

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y+ LI+GLC+ + ++EA +  E+M++ G  P V TY  L++G CK G    A+   + M 
Sbjct: 386 YSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMK 445

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                PN V ++TL++GLCK  +  + + +L  M  +G KPD   Y  +IS  C   + +
Sbjct: 446 LAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVE 505

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +A    D M      PN  T+       N +++GLC
Sbjct: 506 DAQRLFDGM---ACAPNVTTF-------NFLIRGLC 531



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 170/312 (54%), Gaps = 6/312 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  +  T+S++I+     ++   A ++  ++ +  C      F ++  G+ +     DA
Sbjct: 238 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDA 297

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEE-NQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +++F +M++ GC+ T  +Y T++  L ++   +  A   +  +   G+ P + + N LI+
Sbjct: 298 IKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 357

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C ++  +  A + F EM  + C P+  TY  LI+GLC++ ++ EA +  ++M+    +
Sbjct: 358 GFC-DARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYT 415

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PTVVTY  LING C+   ++ A+  FE+M+  G  PN   +++L+DGLCK   ++  + L
Sbjct: 416 PTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRL 475

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M ++  +P+++TY+ L++GLC   ++++A  + D M      P+   +  +I   C 
Sbjct: 476 LCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCA 532

Query: 344 IGKYQEAANFLD 355
             K +EA N LD
Sbjct: 533 QKKVEEARNILD 544



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 185/391 (47%), Gaps = 53/391 (13%)

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
            +L+ LV   +   A R ++ +      P   + NVLI+  CK  G M  A  +F +M +
Sbjct: 2   ALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCK-GGQMHQAVSVFSDMKS 60

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV----------------- 227
            G  P++ T  TL+ GLC +G++  A +LF+EM+     PT                   
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 228 ------------------TYTSLINGLC-QSKS---VEEAMRLFEEMRSKGVEPNVFTYS 265
                             TY  ++ GLC ++KS   +E+AM  F+EM++ GVEP++ +Y 
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            L+  L   G  ++A  L   M      P+I+TY+ L++G CK G+  EA  ++  +   
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 237

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G +P+   Y  II+C+C + K +EA     +M+     PN +T+       NT++ G CK
Sbjct: 238 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTF-------NTLIAGFCK 290

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK-GDIHKSARIVDELVLDGCLPDEG 443
                 A +++  M         +TY++LI   CKK G ++ +  + ++L   G  P   
Sbjct: 291 AGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIV 350

Query: 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           T+++++    D R++ +A +    E+  KC 
Sbjct: 351 TYNSLIQGFCDARRLSEAMQ-YFDEMEGKCA 380



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 12/206 (5%)

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           ++L+ GL       QA+ L + +++    PN  TY+ L+ G CK G++ +AV +   MK 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            GL P+A     ++   C+IG+   A     EM  G   P   +       HN +++G  
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSAS-------HNILLRGFF 113

Query: 385 KTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFC----KKGDIHKSARIVDELVLDGCL 439
                R    +L  MR  S SV + TY+ ++   C        + ++     E+   G  
Sbjct: 114 MAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVE 173

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           PD  ++  +++AL D  +M +A  L 
Sbjct: 174 PDLESYHILLSALSDSGRMAEAHALF 199


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 235/504 (46%), Gaps = 68/504 (13%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHR 100
           A G R D   ++  +   V+A     A  +L R+ + +     D F    +  G  R  +
Sbjct: 151 AAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGK 210

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             DA++VFD+M + G  P   +Y T++   V+   L+  FR    M + G +P V + NV
Sbjct: 211 GSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNV 270

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL----------------------- 197
           L+  LC+ +G MD    +  EM +    PD +TY  L                       
Sbjct: 271 LLSGLCR-AGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKK 329

Query: 198 ------------INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
                       +NGLC+ GK+ +A+++ + +      PT   Y +LING CQ + ++ A
Sbjct: 330 GVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGA 389

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             +FE+M+S+ + P+  TY++L++GLCK    ++A +L+  M      P++ T++TL++ 
Sbjct: 390 FSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDA 449

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
             + G+L++   +L  M+ +G+K +   +G ++  FC  GK  EA   LD+M+   + PN
Sbjct: 450 YGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPN 509

Query: 366 RLTW----------------------------SLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
              +                            S  I  +N +++GLCK    + A ++  
Sbjct: 510 AQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIY 569

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
           ++ N+ +  D ++Y+++I+  C KGD  ++  ++ E+      P   T+  +++AL    
Sbjct: 570 NLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAG 629

Query: 457 KMRQAAELLLLELMNKCVEAEVDI 480
           ++    E L   +++K VE    I
Sbjct: 630 RVHD-MECLYQHMVHKNVEPSSSI 652



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 189/411 (45%), Gaps = 48/411 (11%)

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVA 156
           V R  D    F  +   G  P   ++   +   V    L  A    R M R  G  P  A
Sbjct: 136 VGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDA 195

Query: 157 -SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            S NV+I  L + SG    A K+F EM +RG  P+  TY T+I+G  + G +     L  
Sbjct: 196 FSYNVVIAGLWR-SGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRD 254

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           +M      P VVTY  L++GLC++  ++E   L +EM S  + P+ FTYS L DGL + G
Sbjct: 255 QMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTG 314

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
            S   + L    + K       T S LLNGLCK+GK+ +A ++L+ +   GL P   +Y 
Sbjct: 315 DSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYN 374

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK---------- 385
            +I+ +C +   Q A +  ++M    I P+ +T+       N ++ GLCK          
Sbjct: 375 TLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITY-------NALINGLCKMEMITEAEDL 427

Query: 386 --------TDPN------------------RAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
                    DP+                  + F V   M+++ I  + +++ S++  FCK
Sbjct: 428 VMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCK 487

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
            G I ++  I+D+++    +P+   +++++ A  +     QA   LL+E M
Sbjct: 488 NGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQA--FLLVEKM 536



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 123/226 (54%), Gaps = 1/226 (0%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M++ G +P+ +++ T++       QL+  F     M++ GI+  V S   ++KA CKN 
Sbjct: 430 EMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKN- 488

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A  I  +M ++   P++  Y ++I+     G   +A  L ++M++   S ++ TY
Sbjct: 489 GKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTY 548

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             L+ GLC++  ++EA  L   + ++G+ P+V +Y++++   C  G + +A+ELLQ M  
Sbjct: 549 NLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHK 608

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              RP + TY  LL+ L   G++ +   +   M  + ++P + +YG
Sbjct: 609 YDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYG 654



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 4/276 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +D+  A  IF+   + +    R D+ T++ +I+ L        AEDL+  + K   D + 
Sbjct: 384 RDLQGAFSIFEQMKSRH---IRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSV 440

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           + F ++   YGR  +      V   M++ G +    S+ +V+    +  ++  A      
Sbjct: 441 ETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDD 500

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M    + P     N +I A  ++ GT + AF +  +M + G +   +TY  L+ GLC+  
Sbjct: 501 MIHKDVVPNAQVYNSIIDAYIESGGT-EQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNS 559

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +I EA+EL   +  +   P VV+Y ++I+  C     + A+ L +EM    + P + TY 
Sbjct: 560 QIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYH 619

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
            L+  L   G       L Q M+ K   P+   Y T
Sbjct: 620 PLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGT 655


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 175/327 (53%), Gaps = 9/327 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  +++    KL + FY  + E G    +   N+L+   CK  G +  A  +F  +   
Sbjct: 96  VLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKE-GDIRVAQSVFNAITKW 154

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 155 GLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDA 214

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 215 NELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 274

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G  + A      M+   I  +
Sbjct: 275 LCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD 334

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            + ++        ++ GLC+      A +V   M +  +  D+ TY+ +I  FCKKGD+ 
Sbjct: 335 DVAYT-------ALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVW 387

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTA 451
             ++++ E+  DG +P   T++ +M  
Sbjct: 388 TGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 159/268 (59%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VF+ + ++G  P+  S+ T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 144 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 203

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM ++G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 204 GLCKES-KMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLS 262

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEH 322

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPD G Y  II+ FC 
Sbjct: 323 RKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCK 382

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G     +  L EM   G  P+ +T+++
Sbjct: 383 KGDVWTGSKLLKEMQRDGHVPSVVTYNV 410



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 180/356 (50%), Gaps = 21/356 (5%)

Query: 119 TPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVASLNVLIKALCKNSG 170
           T +S I V + L+    E   L+ A   YR  RE    +    C   L  ++K       
Sbjct: 50  TQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKL-----K 104

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
                +  + E+   G     Y +  L++  C+ G I  A+ +F  +      P+VV++ 
Sbjct: 105 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFN 164

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK      A EL   M+ K
Sbjct: 165 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 224

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +I   C  G  ++A
Sbjct: 225 GLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 284

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
            + +DEM + G+ P+++T++       T++ G CK  D   AF+    M   +I +D + 
Sbjct: 285 HDLIDEMSMKGLKPDKITYT-------TLIDGCCKEGDLETAFEHRKRMIQENIRLDDVA 337

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y++LI+  C++G    + +++ E++  G  PD GT++ ++     +  +   ++LL
Sbjct: 338 YTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLL 393



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 147/287 (51%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + + + K     +   F ++  GY R+    +  R+   M 
Sbjct: 128 FNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 187

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M + G+ P   +   LI   CK SG +
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCK-SGRV 246

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++  +PD  TY TLI GLC+ G + +A +L  EM  K   P  +TYT+L
Sbjct: 247 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 306

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   +E A    + M  + +  +   Y++L+ GLC+ G    A ++L+ M+S   
Sbjct: 307 IDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGL 366

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G +    ++L  M+  G  P    Y  +++
Sbjct: 367 KPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMN 413



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 143/305 (46%), Gaps = 19/305 (6%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E        D Y +  LI      G + +A E ++           
Sbjct: 32  KGKGSASAVFAAILETKGTQ-RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPF 90

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  + + K  +     +EE+   G   +++ ++ LM   CK G    A  +   
Sbjct: 91  DTCRKVLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNA 150

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+++TL+NG  + G L E   +   M   G++PD   Y  +I+  C   K
Sbjct: 151 ITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK 210

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM+  G+ PN +T++       T++ G CK+   + A ++Y  M ++S+S 
Sbjct: 211 MDDANELFDEMLDKGLVPNGVTFT-------TLIDGHCKSGRVDLAMEIYKQMLSQSLSP 263

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM----------TALWDR 455
           D +TY++LI   CKKGD+ ++  ++DE+ + G  PD+ T++ ++          TA   R
Sbjct: 264 DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHR 323

Query: 456 RKMRQ 460
           ++M Q
Sbjct: 324 KRMIQ 328


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 102 LDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           +D M+ V+ +M E    P   +Y  ++    +   ++ A ++   + E G+ P   +   
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS 258

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   C+    +D+AFK+F EMP +GC  +   Y  LI+GLC   +I EA +LF +M+  
Sbjct: 259 LIMGYCQRK-DLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDD 317

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C PTV TYT LI  LC S+   EA+ L +EM   G++PN+ TY+ L+D LC      +A
Sbjct: 318 ECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKA 377

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  M+ K   PN++TY+ L+NG CK G +++AV++++ M+ + L P+   Y ++I  
Sbjct: 378 RELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKG 437

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
           +C      +A   L++M+   + P+ +T+       N+++ G C++ + + A+++   M 
Sbjct: 438 YCK-SNVHKAMGVLNKMLERKVLPDVVTY-------NSLIDGQCRSGNFDSAYRLLSLMN 489

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +R +  D  TY+S+I   CK   + ++  + D L   G  P+   ++A++       K+ 
Sbjct: 490 DRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVD 549

Query: 460 QAAELLLLELMNK 472
           + A L+L ++++K
Sbjct: 550 E-AHLMLEKMLSK 561



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 214/471 (45%), Gaps = 44/471 (9%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           KD++ A  +F+    +   G R +   ++ +I  L  A +   A DL  ++  ++C  T 
Sbjct: 267 KDLDSAFKVFNEMPLK---GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTV 323

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             +  + +      R  +A+ +  +M+E G +P   +Y  ++  L  + + + A      
Sbjct: 324 RTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQ 383

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDA------------------------------- 174
           M E G+ P V + N LI   CK     DA                               
Sbjct: 384 MLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNV 443

Query: 175 --AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
             A  +  +M  R   PD  TY +LI+G CR G    A  L   M  +   P   TYTS+
Sbjct: 444 HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSM 503

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+ LC+SK VEEA  LF+ +  KGV PNV  Y++L+DG CK G   +A  +L+ M+SK  
Sbjct: 504 IDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNC 563

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            PN +T++ L++GLC +GKL+EA  + ++M   GL+P       +I      G +  A +
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
              +M+  G  P+  T++       T +Q  C+      A  +   MR   +S D  TYS
Sbjct: 624 RFQQMLSSGTKPDAHTYT-------TFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYS 676

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           SLI  +   G  + +  ++  +   GC P + T+ +++  L + +  +Q  
Sbjct: 677 SLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKG 727



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 216/457 (47%), Gaps = 45/457 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +I           A  + + +  + C   E  +  +  G     R  +A
Sbjct: 248 GLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEA 307

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M +F KMK+  C PT ++Y  ++  L    +   A    + M E GI+P + +  VLI +
Sbjct: 308 MDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDS 367

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC      + A ++  +M  +G  P+  TY  LING C+ G I +A ++ + ME++  SP
Sbjct: 368 LCSQC-KFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSP 426

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  LI G C+S +V +AM +  +M  + V P+V TY+SL+DG C+ G    A  LL
Sbjct: 427 NTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL 485

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M  +   P+  TY+++++ LCK  +++EA ++ D ++ +G+ P+  +Y  +I  +C  
Sbjct: 486 SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKA 545

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT------------------ 386
           GK  EA   L++M+     PN LT+       N ++ GLC                    
Sbjct: 546 GKVDEAHLMLEKMLSKNCLPNSLTF-------NALIHGLCADGKLKEATLLEEKMVKIGL 598

Query: 387 ------------------DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                             D + A+  +  M +     D+ TY++ I  +C++G +  +  
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED 658

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ ++  +G  PD  T+S+++    D  +   A ++L
Sbjct: 659 MMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVL 695



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 197/402 (49%), Gaps = 10/402 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ M++          A   + ++ +   D     + S+  GY +      A +VF++M
Sbjct: 220 TYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC     +Y  ++  L    ++  A   +  M++    P V +  VLIK+LC  S  
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLC-GSER 338

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A  + +EM   G  P+ +TY  LI+ LC   K  +A+EL  +M  K   P V+TY +
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNA 398

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LING C+   +E+A+ + E M S+ + PN  TY+ L+ G CK     +AM +L  M+ ++
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNV-HKAMGVLNKMLERK 457

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++VTY++L++G C+ G    A  +L  M  +GL PD   Y  +I   C   + +EA 
Sbjct: 458 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEAC 517

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           +  D +   G+ PN       + ++  ++ G CK    + A  +   M +++   +SLT+
Sbjct: 518 DLFDSLEQKGVNPN-------VVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++LI   C  G + ++  + +++V  G  P   T + ++  L
Sbjct: 571 NALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRL 612



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 225/494 (45%), Gaps = 85/494 (17%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++++I  L S  +F  A +LL ++ ++        + ++  GY +     DA
Sbjct: 353 GIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDA 412

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + V + M+     P  ++Y  ++    + N  K A      M E  + P V + N LI  
Sbjct: 413 VDVVELMESRKLSPNTRTYNELIKGYCKSNVHK-AMGVLNKMLERKVLPDVVTYNSLIDG 471

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+ SG  D+A+++   M +RG  PD +TY ++I+ LC+  ++ EA +LF  +E K  +P
Sbjct: 472 QCR-SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNP 530

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC------------ 272
            VV YT+LI+G C++  V+EA  + E+M SK   PN  T+++L+ GLC            
Sbjct: 531 NVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLE 590

Query: 273 -----------------------KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
                                  K G    A    Q M+S   +P+  TY+T +   C+E
Sbjct: 591 EKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCRE 650

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G+L +A +++ +M+  G+ PD   Y  +I  + D+G+   A + L  M   G  P++ T+
Sbjct: 651 GRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTF 710

Query: 370 ----------------------------------------------SLHIRIHNTVVQGL 383
                                                         + + + +  ++ G+
Sbjct: 711 LSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGI 770

Query: 384 CKTDPNR-AFQVYLSM-RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           C+    R A +V+  M RN  IS   L +++L++C CK    +++A++VD+++  G LP 
Sbjct: 771 CEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQ 830

Query: 442 EGTWSAVMTALWDR 455
             +   ++  L+ +
Sbjct: 831 LESCKVLICGLYKK 844



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 202/430 (46%), Gaps = 28/430 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ MI  L  + +   A DL D + ++  +    ++ ++  GY +  +  +A
Sbjct: 492 GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + +KM    C P   ++  ++  L  + +LK A      M +IG+QP V++  +LI  
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHR 611

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L K+ G  D A+  F++M + G  PD++TY T I   CR G++ +A+++  +M     SP
Sbjct: 612 LLKD-GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSP 670

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC-------KGG-- 275
            + TY+SLI G         A  + + MR  G EP+  T+ SL+  L        KG   
Sbjct: 671 DLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEP 730

Query: 276 --CSSQAM-------ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL-Q 325
             C+   M       ELL+ M+     PN  +Y  L+ G+C+ G L+ A ++ D M+  +
Sbjct: 731 ELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNE 790

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G+ P   ++  ++SC C + K+ EAA  +D+M+  G  P        +     ++ GL K
Sbjct: 791 GISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLP-------QLESCKVLICGLYK 843

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             +  R   V+ ++       D L +  +I    K+G +     + + +  +GC     T
Sbjct: 844 KGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQT 903

Query: 445 WSAVMTALWD 454
           +S ++    D
Sbjct: 904 YSLLIEGPPD 913



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 28/296 (9%)

Query: 35  FDSATAEY----ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL- 89
           FD A + +    ++G + D  T++  I       +   AED++ ++ +    ++ D+F  
Sbjct: 618 FDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMREN--GVSPDLFTY 675

Query: 90  -SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN-------------- 134
            S+ +GYG + +   A  V  +M++ GCEP+  ++++++  L+E                
Sbjct: 676 SSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAM 735

Query: 135 ----QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRGCTP 189
               +          M E  + P   S   LI  +C+  G +  A K+F  M  N G +P
Sbjct: 736 SNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICE-VGNLRVAEKVFDHMQRNEGISP 794

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
               +  L++  C+L K  EA ++  +M      P + +   LI GL +    E    +F
Sbjct: 795 SELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVF 854

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           + +   G   +   +  ++DG+ K G      EL  +M     + +  TYS L+ G
Sbjct: 855 QNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 367 LTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           L + L I  +NT++  L +    +   QVY+ M    +  +  TY+ ++  +CK G++ +
Sbjct: 177 LKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEE 236

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           + + V ++V  G  PD  T+++++     R+ +  A ++     +  C   EV
Sbjct: 237 ANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEV 289


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 197/388 (50%), Gaps = 30/388 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           D +++F ++ E G  P    Y   +   V+   LK A      M+  G+ P V   NV+I
Sbjct: 165 DTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVI 224

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK     DA  K+F EM +R   P+  TY TLI+G C++G++ EA  + + M+ +  
Sbjct: 225 GGLCKEKRMKDAE-KLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENV 283

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT++T+ SL+NGLC+++ +EEA R+ EEM   G  P+ FTY++L DG  K G    ++ 
Sbjct: 284 EPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASIT 343

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L +  + K  +    T S LLN LCKEG +++A E+L +    GL P    +  I++ +C
Sbjct: 344 LSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYC 403

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWS----------------------------LHIR 374
            +G   +A   +++M   G+ PN +T++                             ++ 
Sbjct: 404 QVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVE 463

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            +NT++ G  ++   +R FQ+   M  + +  + ++Y  LI C CK  +I ++  I+ ++
Sbjct: 464 TYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDM 523

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           V  G +P+   ++ ++       K++ A
Sbjct: 524 VHRGVVPNAQIYNMLIDGSCIAGKLKDA 551



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 202/401 (50%), Gaps = 9/401 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I       Q   A ++ +R+  E  + T   F S+  G  R     +A RV ++M
Sbjct: 254 TYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEM 313

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           + +G  P   +Y T+    ++   +  +          G+Q    + ++L+ ALCK  G 
Sbjct: 314 EVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCK-EGN 372

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           M+ A ++ ++    G  P    + T++NG C++G I +A    ++ME     P  VTY S
Sbjct: 373 MEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNS 432

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+   C+ K++EEA +  ++M  KGV PNV TY++L+DG  +     +  ++L+ M  K 
Sbjct: 433 LVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKG 492

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +PN+++Y  L+N LCK+  + EA  IL  M  +G+ P+A +Y  +I   C  GK ++A 
Sbjct: 493 LKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAF 552

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
            F DEMV   I P  +T+       N ++ GLCK      A  +   +  + +S D +TY
Sbjct: 553 RFFDEMVAREIVPTLVTY-------NILINGLCKKGKVMEAENLASEITRKGLSFDVITY 605

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           +SLI+ +   G++ K+  + + +   G  P   T+  ++  
Sbjct: 606 NSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAG 646



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 210/457 (45%), Gaps = 44/457 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G R D   +   I   V     + A +L+  + +        ++  +  G  +  R  D
Sbjct: 176 SGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKD 235

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++FD+M +    P   +Y T++    +  QL+ AF     M+   ++P + + N L+ 
Sbjct: 236 AEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLN 295

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT--------------------------- 196
            LC+ +  M+ A ++  EM   G  PD +TY T                           
Sbjct: 296 GLCR-AQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQ 354

Query: 197 --------LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
                   L+N LC+ G + +A+E+ K+      +P  V + +++NG CQ   + +A   
Sbjct: 355 ILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTT 414

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            E+M + G+ PN  TY+SL+   C+     +A + ++ M+ K   PN+ TY+TL++G  +
Sbjct: 415 IEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGR 474

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
                   +IL+ M+ +GLKP+   YG +I+C C      EA   L +MV  G+ PN   
Sbjct: 475 SCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPN--- 531

Query: 369 WSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                +I+N ++ G C     + AF+ +  M  R I    +TY+ LI   CKKG + ++ 
Sbjct: 532 ----AQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAE 587

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            +  E+   G   D  T++++++       +++A EL
Sbjct: 588 NLASEITRKGLSFDVITYNSLISGYSSAGNVQKALEL 624



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 197/400 (49%), Gaps = 8/400 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T S++++ L        AE++L +  +         F +I  GY +V     A    +KM
Sbjct: 359 TCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKM 418

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y +++    E   ++ A +  + M E G+ P V + N LI    + S  
Sbjct: 419 EAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGR-SCL 477

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D  F+I  EM  +G  P+  +YG LIN LC+   I EA+ +  +M  +   P    Y  
Sbjct: 478 FDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNM 537

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G C +  +++A R F+EM ++ + P + TY+ L++GLCK G   +A  L   +  K 
Sbjct: 538 LIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKG 597

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              +++TY++L++G    G +Q+A+E+ + MK  G+KP    Y ++I+  C         
Sbjct: 598 LSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAG-CGKEGLVLVE 656

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
               EM+   + P+R+ +  +  IH  V  G    D  +A  ++ +M  + I  D +TY+
Sbjct: 657 KIYQEMLQMNLVPDRVIY--NALIHCYVEHG----DVQKACSLHSAMEAQGIQPDKMTYN 710

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            LI    K+G +HK   +V+++ + G +P   T+  ++  
Sbjct: 711 CLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVG 750



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 180/371 (48%), Gaps = 49/371 (13%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           +L+I  E   +  +   Y  M++ G+ P VASLN+ +++L       D   ++F E+   
Sbjct: 118 LLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYED-TLQLFSEIVES 176

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD + YG  I    +LG +  A EL   M+    SP V  Y  +I GLC+ K +++A
Sbjct: 177 GLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDA 236

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            +LF+EM  + V PN  TY++L+DG CK G   +A  + + M  +   P I+T+++LLNG
Sbjct: 237 EKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNG 296

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGK----------------------------- 336
           LC+   ++EA  +L+ M++ G  PD   Y                               
Sbjct: 297 LCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQIL 356

Query: 337 ------IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
                 +++  C  G  ++A   L + +  G+ P  + +       NT+V G C+  D N
Sbjct: 357 DYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFF-------NTIVNGYCQVGDIN 409

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A+     M    +  + +TY+SL+  FC+  ++ ++ + + ++V  G LP+  T++ ++
Sbjct: 410 KAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLI 469

Query: 450 -----TALWDR 455
                + L+DR
Sbjct: 470 DGYGRSCLFDR 480



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 168/359 (46%), Gaps = 8/359 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A +   KM E G  P  ++Y T++            F+    M + G++P V S   LI
Sbjct: 445 EAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLI 504

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK++  ++A   I  +M +RG  P++  Y  LI+G C  GK+ +A   F EM  +  
Sbjct: 505 NCLCKDANILEAEV-ILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREI 563

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT+VTY  LINGLC+   V EA  L  E+  KG+  +V TY+SL+ G    G   +A+E
Sbjct: 564 VPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALE 623

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M     +P + TY  L+ G  KEG L    +I   M    L PD  +Y  +I C+ 
Sbjct: 624 LYETMKKSGIKPTLNTYHRLIAGCGKEG-LVLVEKIYQEMLQMNLVPDRVIYNALIHCYV 682

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           + G  Q+A +    M   GI P+++T++  I  H        +   ++   +   M+ R 
Sbjct: 683 EHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGH------FKEGRMHKVKNLVNDMKIRG 736

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +   + TY  LI   CK  D   +     E+  +G  P       ++T L +  +   A
Sbjct: 737 LIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSHDA 795



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 200/424 (47%), Gaps = 24/424 (5%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+NKA    +   A    G R ++ T++ ++ K         AE  + ++ ++      +
Sbjct: 407 DINKAYTTIEKMEAV---GLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVE 463

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + ++  GYGR        ++ ++M++ G +P   SY  ++  L ++  +  A      M
Sbjct: 464 TYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDM 523

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G+ P     N+LI   C  +G +  AF+ F EM  R   P   TY  LINGLC+ GK
Sbjct: 524 VHRGVVPNAQIYNMLIDGSCI-AGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGK 582

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + EA+ L  E+  K  S  V+TY SLI+G   + +V++A+ L+E M+  G++P + TY  
Sbjct: 583 VMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHR 642

Query: 267 LMDGLCKGGCSSQAMELL----QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           L+      GC  + + L+    Q M+     P+ V Y+ L++   + G +Q+A  +   M
Sbjct: 643 LI-----AGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAM 697

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           + QG++PD   Y  +I      G+  +  N +++M + G+ P   T+ +       ++ G
Sbjct: 698 EAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDI-------LIVG 750

Query: 383 LCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG---C 438
            CK  D + A+  Y  M     +       +LIT   ++G  H +  I  E+ + G   C
Sbjct: 751 HCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSHDADVICSEMNMKGKDDC 810

Query: 439 LPDE 442
             DE
Sbjct: 811 RADE 814


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 208/393 (52%), Gaps = 14/393 (3%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNK---EKCDITEDIFLSICRGYGRVHRPL 102
           F  D  ++  +I+ L  + + R A  LL ++      + D+   ++ +I   + +    +
Sbjct: 154 FHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVI--MYTAIIDSFCKDKLVI 211

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  ++ +M      P   ++ +++       QLK A      M    + P V + N+LI
Sbjct: 212 DAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILI 271

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +  A  +   M  +G  P+  TY +L++G   + ++ +AK +F  +  +  
Sbjct: 272 DGLCK-EGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGV 330

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P V +Y+ +INGLC++K V+EA++LF+EM  K + PN  TYSSL+DGLCK G  S   +
Sbjct: 331 TPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWD 390

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L+  + ++    NI+TY++LLNGLCK  ++ +A+ +L +MK +G++PD   Y  ++   C
Sbjct: 391 LIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLC 450

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G+ ++A     +++  G       + L+IR++  ++ GLCK    + A  +   M + 
Sbjct: 451 KNGRLKDAQRIYQDLLCKG-------YPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDN 503

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
               D++TY +LI+   K     K+ +++ E++
Sbjct: 504 GCMPDAVTYETLISALFKNNKNGKAVKLLREMI 536



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 195/364 (53%), Gaps = 10/364 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+    +M+  G +P   ++  ++       QL  AF     + ++G QP   ++N L++
Sbjct: 72  AISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLR 131

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME-TKAC 222
            LC N G +  A      +  +    D  +YGTLINGLC+ G+   A +L +++E     
Sbjct: 132 GLCLN-GKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLV 190

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V+ YT++I+  C+ K V +A  L+ EM  K + PNV T++SL+ G C  G   +A+ 
Sbjct: 191 RPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVG 250

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M      PN+ T++ L++GLCKEG++++A  +L  M  QG++P+   Y  ++  + 
Sbjct: 251 LLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYF 310

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
            + +  +A +  + + L G+TPN  ++S+       ++ GLCK    + A +++  M  +
Sbjct: 311 LVKEVNKAKHVFNTISLRGVTPNVHSYSV-------MINGLCKNKMVDEAVKLFKEMHLK 363

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +++ +++TYSSLI   CK G I     ++DE+   G   +  T+++++  L    ++ +A
Sbjct: 364 NMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKA 423

Query: 462 AELL 465
             LL
Sbjct: 424 IALL 427



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 221/501 (44%), Gaps = 71/501 (14%)

Query: 35  FDSATAEYANGFRHDNST-----FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
            D A + + +    +N T     F+ ++S LV  N F+ A     ++  +        F 
Sbjct: 33  LDDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFN 92

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            +   +  + +   A  +  K+ + G +P   +  T+L  L    ++K A  F+ H+   
Sbjct: 93  ILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRK 152

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCRLGKIY 208
                  S   LI  LCK SG   AA ++ R++       PD   Y  +I+  C+   + 
Sbjct: 153 RFHLDQVSYGTLINGLCK-SGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVI 211

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A +L+ EM  K   P VVT+ SLI G C    ++EA+ L  EM    V PNV+T++ L+
Sbjct: 212 DAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILI 271

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DGLCK G   +A  +L +MI +   PN+VTY++L++G     ++ +A  + + + L+G+ 
Sbjct: 272 DGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVT 331

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS------------------ 370
           P+   Y  +I+  C      EA     EM L  +TPN +T+S                  
Sbjct: 332 PNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDL 391

Query: 371 ----------LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
                      +I  +N+++ GLCK    ++A  +   M++  I  D  TY++L+   CK
Sbjct: 392 IDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCK 451

Query: 420 KGDIHKSARIVDELVL-----------------------------------DGCLPDEGT 444
            G +  + RI  +L+                                    +GC+PD  T
Sbjct: 452 NGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVT 511

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +  +++AL+   K  +A +LL
Sbjct: 512 YETLISALFKNNKNGKAVKLL 532



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 157/323 (48%), Gaps = 23/323 (7%)

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           R + IQP  + ++ L  A+        ++F     M N   TP  + +  +++ L ++  
Sbjct: 19  RRLHIQPLPSFIDNLDDAV--------SSFNHILHMNNH--TPPIFEFNKILSSLVKMNH 68

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
              A    ++ME K   P + T+  LIN       +  A  +  ++   G +P+  T ++
Sbjct: 69  FKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNT 128

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+ GLC  G   +A+     +I KR   + V+Y TL+NGLCK G+ + A+++L   K++G
Sbjct: 129 LLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLR--KIEG 186

Query: 327 L---KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
           L   +PD  +Y  II  FC      +A +   EM++  I PN +T+       N+++ G 
Sbjct: 187 LLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTF-------NSLIYGF 239

Query: 384 CKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C       A  +   M   +++ +  T++ LI   CK+G++ K+  ++  ++  G  P+ 
Sbjct: 240 CIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNV 299

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T++++M   +  +++ +A  + 
Sbjct: 300 VTYTSLMDGYFLVKEVNKAKHVF 322



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 123/273 (45%), Gaps = 34/273 (12%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+++I  L    + + A  +L  + K+  +     + S+  GY  V     A  VF+ +
Sbjct: 266 TFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTI 325

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---- 167
              G  P   SY  ++  L +   +  A + ++ M    + P   + + LI  LCK    
Sbjct: 326 SLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRI 385

Query: 168 -----------NSGT-------------------MDAAFKIFREMPNRGCTPDSYTYGTL 197
                      N G                    +D A  +  +M + G  PD  TY TL
Sbjct: 386 SDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTL 445

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++GLC+ G++ +A+ +++++  K     +  YT +INGLC+    +EA+ L  +M   G 
Sbjct: 446 VDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGC 505

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            P+  TY +L+  L K   + +A++LL+ MI++
Sbjct: 506 MPDAVTYETLISALFKNNKNGKAVKLLREMIAR 538


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 206/418 (49%), Gaps = 31/418 (7%)

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQL 136
           K+     E  F ++ RG    ++  DA+ +F K+ +E  CEP    Y TV+  L ++   
Sbjct: 135 KKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHT 194

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           + AF   R M +   +P     N++I A CK+ G +D A  +  EM  +   PD  TY +
Sbjct: 195 QKAFDLLRLMEQGITKPDTCIYNIVIDAFCKD-GMLDGATSLLNEMKQKNIPPDIITYTS 253

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           LI+GL +L +  + + LF EM      P V T+ S+I+GLC+   VE+A  +   M  KG
Sbjct: 254 LIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKG 313

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           VEPN  TY+ +MDG C  G   +A  +   MI K   P+I++Y+ L+NG  ++ K+ +A+
Sbjct: 314 VEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAM 373

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW------- 369
           ++   +   GLKP       ++    ++G+ + A  F DEM   G  PN  T        
Sbjct: 374 QLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGY 433

Query: 370 ---------------------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
                                  +I+I+  V+ GLCK    ++A   +  +    +  D 
Sbjct: 434 FKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDV 493

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY+++I+ +C++G + ++  ++ ++  +GCLPD  T++ ++   +   K+ +    L
Sbjct: 494 ITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFL 551



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 183/371 (49%), Gaps = 13/371 (3%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDA 104
           + D   ++++I           A  LL+ + ++  +I  DI  + S+  G G++ +    
Sbjct: 210 KPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQK--NIPPDIITYTSLIDGLGKLSQWEKV 267

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F +M      P   ++ +V+  L +E +++ A     +M E G++P   + NV++  
Sbjct: 268 RTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDG 327

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G M  A +IF  M ++G  PD  +Y  LING     K+ +A +LF+E+      P
Sbjct: 328 YCLR-GQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKP 386

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           ++VT + L+ GL +    E A   F+EM++ G  PN++T+ +L+ G  K G   +AM   
Sbjct: 387 SIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHF 446

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +  +R   NI  Y+ ++NGLCK GKL +A    +++ L GL PD   Y  +IS +C  
Sbjct: 447 HKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQE 506

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSI 403
           G   EA + L +M   G  P+        R +N +V+G  ++      + +L  +  +S 
Sbjct: 507 GLLDEAKDMLRKMEDNGCLPDN-------RTYNVIVRGFFRSSKVSEMKAFLKEIAGKSF 559

Query: 404 SVDSLTYSSLI 414
           S ++ T   L+
Sbjct: 560 SFEAATVELLM 570



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 160/336 (47%), Gaps = 44/336 (13%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-------ET 219
           +N   +D AF +FR+M      P + ++  L+  L  +        +F+E+       + 
Sbjct: 48  ENVKCLDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDA 107

Query: 220 KACSPTV----------------------------VTYTSLINGLCQSKSVEEAMRLFEE 251
            A S  V                            VT+T+LI GL     V++A+ LF++
Sbjct: 108 FALSTVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKK 167

Query: 252 M-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           + R    EP+   Y ++MDGLCK G + +A +LL++M     +P+   Y+ +++  CK+G
Sbjct: 168 LVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDG 227

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L  A  +L+ MK + + PD   Y  +I     + ++++      EM+   I P+  T+ 
Sbjct: 228 MLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTF- 286

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N+V+ GLCK      A ++   M  + +  + +TY+ ++  +C +G + ++ RI
Sbjct: 287 ------NSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRI 340

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            D ++  G  PD  +++A++    +++KM +A +L 
Sbjct: 341 FDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLF 376



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 139/311 (44%), Gaps = 42/311 (13%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRPLDAM 105
           D  TF+ +I  L    +   AE+++  + ++  +  E  +  +  GY   G++ R   A 
Sbjct: 282 DVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGR---AR 338

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+FD M + G EP   SY  ++   VE+ ++  A + +R + + G++P + + +VL++ L
Sbjct: 339 RIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGL 398

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL---------------------------- 197
            +  G  + A   F EM   G  P+ YT+ TL                            
Sbjct: 399 FE-VGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTN 457

Query: 198 -------INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
                  INGLC+ GK+ +A   F+++      P V+TYT++I+G CQ   ++EA  +  
Sbjct: 458 IQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLR 517

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M   G  P+  TY+ ++ G  +    S+    L+ +  K       T   L++ + ++ 
Sbjct: 518 KMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDIIAEDP 577

Query: 311 KLQEAVEILDR 321
            L   +    R
Sbjct: 578 SLLNMIPEFHR 588


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 189/368 (51%), Gaps = 10/368 (2%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H P  A+ +F ++   G  P+  +   ++     +  L  AF     + ++G QP + + 
Sbjct: 70  HYP-TAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTF 128

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N LI   C N G +  A     ++  +G   D ++YG+LINGLC+ G+  +A +L ++ME
Sbjct: 129 NTLINGFCIN-GMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKME 187

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P ++TY+++I+GLC+ + + +A+RLF  + S+G+  +V  Y+SL+ G C  G   
Sbjct: 188 EDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWR 247

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A  LL MM+     P+  T++ L++ LCKEG++ EA  +   M  +G KPD   Y  ++
Sbjct: 248 EATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALM 307

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
             FC      EA    + MV  G+ P+ L +       N ++ G CK D  + A  ++  
Sbjct: 308 EGFCLSNNVSEARELFNRMVKRGLEPDVLNY-------NVLINGYCKIDMVDEAMVLFKE 360

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           +R +++  +  TY+SLI   CK G +     +VDE+   G  PD  T++  + A    + 
Sbjct: 361 IRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKP 420

Query: 458 MRQAAELL 465
             +A  L 
Sbjct: 421 YEKAISLF 428



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 206/423 (48%), Gaps = 10/423 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+ +  TF+ +I+          A      +  +   + E  + S+  G  +  +  DA
Sbjct: 120 GFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDA 179

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  KM+E    P   +Y TV+  L ++  +  A R +  +   GI   V + N LI  
Sbjct: 180 LQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHG 239

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C + G    A ++   M      PD YT+  L++ LC+ G+I EA+ +F  M  +   P
Sbjct: 240 CC-SVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKP 298

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VTY +L+ G C S +V EA  LF  M  +G+EP+V  Y+ L++G CK     +AM L 
Sbjct: 299 DIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLF 358

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + +  K   PN+ TY++L++GLCK G++    E++D M  +G  PD   Y   +  FC  
Sbjct: 359 KEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKS 418

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSI 403
             Y++A +   ++V  GI P+         +++ +V+  CK +  + A +    +     
Sbjct: 419 KPYEKAISLFRQIV-QGIWPD-------FYMYDVIVENFCKGEKLKIAEEALQHLLIHGC 470

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TY+ +I   CK     ++  ++ ++  + C PD  T+  ++ AL +R +  +A +
Sbjct: 471 CPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEK 530

Query: 464 LLL 466
           L L
Sbjct: 531 LRL 533



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 153/300 (51%), Gaps = 9/300 (3%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P +   + L+ A+ +  G    A  +F ++ ++G TP   T   LIN  C    +  A  
Sbjct: 53  PPIFVFDKLLGAIVR-MGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFS 111

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           L   +      P +VT+ +LING C +  V +AM    ++ +KG   + F+Y SL++GLC
Sbjct: 112 LLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLC 171

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G +  A++LLQ M     RPN++TYST+++GLCK+  + +A+ +   +  +G+  D  
Sbjct: 172 KNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVV 231

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF 392
            Y  +I   C +G+++EA   L  MV G I P+  T+       N +V  LCK       
Sbjct: 232 AYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTF-------NILVDALCKEGRIVEA 284

Query: 393 Q-VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           Q V+  M  R    D +TY++L+  FC   ++ ++  + + +V  G  PD   ++ ++  
Sbjct: 285 QGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLING 344



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 175/354 (49%), Gaps = 11/354 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT + V+  +  ++ +  AL +F   T+    G   D   ++ +I    S  Q+R A  L
Sbjct: 196 ITYSTVIDGLCKDRLIADALRLFSLVTSR---GILVDVVAYNSLIHGCCSVGQWREATRL 252

Query: 73  LD---RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           L    R N    D T +I +      GR+   ++A  VF  M + G +P   +Y  ++  
Sbjct: 253 LTMMVRGNINPDDYTFNILVDALCKEGRI---VEAQGVFAVMMKRGEKPDIVTYNALMEG 309

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
               N +  A   +  M + G++P V + NVLI   CK    +D A  +F+E+  +   P
Sbjct: 310 FCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCK-IDMVDEAMVLFKEIRCKNLVP 368

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +  TY +LI+GLC+LG++   +EL  EM  +  SP +VTY   ++  C+SK  E+A+ LF
Sbjct: 369 NLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLF 428

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            ++  +G+ P+ + Y  +++  CKG     A E LQ ++     PN+ TY+ ++N LCK+
Sbjct: 429 RQI-VQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKD 487

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
               EA+ +L +M      PDA  +  II    +  +  +A     EM+  G+ 
Sbjct: 488 CSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLV 541



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 153/318 (48%), Gaps = 15/318 (4%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T+D     F  M  +   P  + +  L+  + R+G    A  LF ++ +K  +P++ T T
Sbjct: 35  TVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLT 94

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN  C    +  A  L   +   G +PN+ T+++L++G C  G  S+AM     +++K
Sbjct: 95  ILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAK 154

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
            +  +  +Y +L+NGLCK G+ ++A+++L +M+   ++P+   Y  +I   C      +A
Sbjct: 155 GYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADA 214

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR-SISVDSLT 409
                 +   GI  + + +       N+++ G C     R     L+M  R +I+ D  T
Sbjct: 215 LRLFSLVTSRGILVDVVAY-------NSLIHGCCSVGQWREATRLLTMMVRGNINPDDYT 267

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           ++ L+   CK+G I ++  +   ++  G  PD  T++A+M        + +A EL     
Sbjct: 268 FNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELF---- 323

Query: 470 MNKCVE--AEVDIQNQDV 485
            N+ V+   E D+ N +V
Sbjct: 324 -NRMVKRGLEPDVLNYNV 340


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 214/454 (47%), Gaps = 48/454 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDK 110
           T+ ++I     A +       L  V K+   +    F  + +G     R  DAM  V  +
Sbjct: 89  TYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRR 148

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REIGIQPCVASLNVLIKALCK 167
           M E  C P   S   +L  L +EN+ + A      M   R  G  P V S   +I    K
Sbjct: 149 MTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFK 208

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G  D A+  + EM +R  +PD  TY ++I  LC+   + +A E+   M      P  +
Sbjct: 209 E-GDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCM 267

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY S+++G C S+  +EA+   ++MRS GVEP+V TY+SLMD LCK G S++A ++   M
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM 327

Query: 288 ISKRHRPNIVTYSTLLNGLCKEG-----------------------------------KL 312
             +   P+I TY TLL G   +G                                   K+
Sbjct: 328 TKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKV 387

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA+ +  +M+  GL P+   YG +I   C  G   +A  + ++M+  G+TPN       
Sbjct: 388 DEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN------- 440

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           I ++ +++  LC  D  ++A ++ L M +R I ++++ ++S+I   CK+G + +S ++ D
Sbjct: 441 IIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFD 500

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +V  G  P+  T+S ++       KM +A +LL
Sbjct: 501 LMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 220/455 (48%), Gaps = 12/455 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++  +   + ++KA+ +    T    NG   +  T++ ++    S+ Q + A   
Sbjct: 232 VTYSSIIAALCKGQAMDKAMEVL---TTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF 288

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++  +  +     + S+     +  R  +A ++FD M + G EP   +Y T+L     
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L         M   GI P     N+LI A  K    +D A  +F +M   G  P+  
Sbjct: 349 KGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQE-KVDEAMLVFSKMRQHGLNPNVV 407

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYG +I  LC+ G + +A   F++M  +  +P ++ YTSLI+ LC     ++A  L  EM
Sbjct: 408 TYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEM 467

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+  N   ++S++   CK G   ++ +L  +M+    +PN++TYSTL++G C  GK+
Sbjct: 468 LDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM 527

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L  M   G+KPD   Y  +I+ +C + +  +A     EMV  G++PN +T+   
Sbjct: 528 DEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY--- 584

Query: 373 IRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               N ++QGL  T    A  ++Y+ +      ++  TY+ ++   CK     ++ R+  
Sbjct: 585 ----NIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQ 640

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            L L     +  T++ ++ AL    +  +A +L +
Sbjct: 641 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFV 675



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 196/416 (47%), Gaps = 46/416 (11%)

Query: 99  HRPLDAMRVFDKMKEFGC---EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           H P  A+  +++M   G     PT  +Y  ++       +L L F    ++ + G +   
Sbjct: 63  HSPAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEA 122

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            +   L+K LC +  T DA   + R M    C PD ++   L+ GLC   +  EA EL  
Sbjct: 123 ITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLH 182

Query: 216 EMETK---ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            M        +P VV+YT++ING  +    ++A   + EM  + + P+V TYSS++  LC
Sbjct: 183 MMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALC 242

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           KG    +AME+L  M+     PN +TY+++L+G C   + +EA+  L +M+  G++PD  
Sbjct: 243 KGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVV 302

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW--------------------SLH 372
            Y  ++   C  G+  EA    D M   G+ P+  T+                     L 
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLM 362

Query: 373 IR--IH------NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           +R  IH      N ++    K +  + A  V+  MR   ++ + +TY ++I   CK G +
Sbjct: 363 VRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSV 422

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTAL-----WDRRKMRQAAELLLLELMNKCV 474
             +    ++++ +G  P+   +++++ +L     WD+      AE L+LE++++ +
Sbjct: 423 DDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDK------AEELILEMLDRGI 472



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 193/436 (44%), Gaps = 46/436 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS T     G   D +T+  ++    +         LLD + +        +F  +  
Sbjct: 323 IFDSMTKR---GLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILIC 379

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +  +AM VF KM++ G  P   +Y  V+ IL +   +  A  ++  M + G+ P
Sbjct: 380 AYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439

Query: 154 CVASLNVLIKALCK--------------------------NS--------GTMDAAFKIF 179
            +     LI +LC                           NS        G +  + K+F
Sbjct: 440 NIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLF 499

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  P+  TY TLI+G C  GK+ EA +L   M +    P  VTY +LING C+ 
Sbjct: 500 DLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRV 559

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A+ LF+EM S GV PN+ TY+ ++ GL     ++ A EL   +     +  + TY
Sbjct: 560 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTY 619

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     EA+ +   + L  L+ +   +  +I     +G+  EA +       
Sbjct: 620 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSS 679

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G+ PN   W+  +   N + QGL +       Q++ SM +   +VDS   + ++    +
Sbjct: 680 NGLVPNY--WTYRLMAENIIGQGLLE----ELDQLFFSMEDNGCTVDSGMLNFIVRELLQ 733

Query: 420 KGDIHKSA---RIVDE 432
           +G+I ++     ++DE
Sbjct: 734 RGEITRAGTYLSMIDE 749



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 163/343 (47%), Gaps = 6/343 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V+ A++ F+    E   G   +   ++ +I  L   +++  AE+L
Sbjct: 407 VTYGAVIGILCKSGSVDDAMLYFEQMIDE---GLTPNIIVYTSLIHSLCIFDKWDKAEEL 463

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C +    F SI   + +  R +++ ++FD M   G +P   +Y T++    
Sbjct: 464 ILEMLDRGIC-LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYC 522

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              ++  A +    M  +G++P   + N LI   C+ S  MD A  +F+EM + G +P+ 
Sbjct: 523 LAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVS-RMDDALALFKEMVSSGVSPNI 581

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  ++ GL    +   AKEL+  +        + TY  +++GLC++   +EA+R+F+ 
Sbjct: 582 ITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQN 641

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +    ++    T++ ++  L K G + +A +L     S    PN  TY  +   +  +G 
Sbjct: 642 LCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGL 701

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           L+E  ++   M+  G   D+G+   I+      G+   A  +L
Sbjct: 702 LEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL 744



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 2/270 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T+S +I     A +   A  LL  +           + ++  GY RV R  DA
Sbjct: 506 GVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDA 565

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M   G  P   +Y  +L  L    +   A   Y  + + G Q  +++ N+++  
Sbjct: 566 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHG 625

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN+ T D A ++F+ +       ++ T+  +I  L ++G+  EAK+LF    +    P
Sbjct: 626 LCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVP 684

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  +   +     +EE  +LF  M   G   +    + ++  L + G  ++A   L
Sbjct: 685 NYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL 744

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             MI ++H     + ++L   L   GK QE
Sbjct: 745 S-MIDEKHFSLEASTASLFIDLLSGGKYQE 773


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 178/360 (49%), Gaps = 29/360 (8%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M  FG  P   +   ++      N++  AF     + ++G QP   +   LI+ LC   
Sbjct: 70  QMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCV-E 128

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A  +F +M + G  P+  TYGTLINGLC++G    A  L + ME   C P VV Y
Sbjct: 129 GKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIY 188

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           TS+I+ LC+ + V EA  LF +M  +G+ P++FTY+SL+  LC          LL  M++
Sbjct: 189 TSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVN 248

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
            +  P++V +ST+++ LCKEGK+ EA EI+D M  +G++PD   Y  ++   C   +  E
Sbjct: 249 SKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDE 308

Query: 350 AANFLDEMVLGGITPNRLTWSLHIR---------IHNTVVQGLCKTDPN----------- 389
           A    D MV  G  P+ ++++  I          +    V GL K  P+           
Sbjct: 309 AVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIR 368

Query: 390 --------RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
                   +   +   M N  I  + + +S+++   CK+G + ++  +VD ++  G  P+
Sbjct: 369 KDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPN 428



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 187/379 (49%), Gaps = 11/379 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F+++      P+   +  +L  + +             M   G+ P V +LN+LI
Sbjct: 28  DALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILI 87

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            + C +   +  AF +  ++   G  PD  T+ TLI GLC  GKI EA  LF +M  +  
Sbjct: 88  NSFC-HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGF 146

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY +LINGLC+  +   A+RL   M     +P+V  Y+S++D LCK    ++A  
Sbjct: 147 QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFN 206

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M+ +   P+I TY++L++ LC   + +    +L++M    + PD  ++  ++   C
Sbjct: 207 LFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALC 266

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
             GK  EA   +D M+  G+ P+ +T++       T++ G C +++ + A +V+  M  +
Sbjct: 267 KEGKVTEAHEIVDMMIQRGVEPDVVTYT-------TLMDGHCLQSEMDEAVKVFDMMVRK 319

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             + D ++Y++LI    K G    S + V  LV +   PD     AV     D+ K+ + 
Sbjct: 320 GFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKE--TPDAVKGGAVEVIRKDKMKLFEK 377

Query: 462 AELLLLELMNKCVEAEVDI 480
              LL E++N  +   V I
Sbjct: 378 GRTLLNEMVNSKIMPNVVI 396



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 163/355 (45%), Gaps = 70/355 (19%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ +I                                   RG     +  +A
Sbjct: 110 GHQPDPTTFTTLI-----------------------------------RGLCVEGKIGEA 134

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +FDKM + G +P   +Y T++  L +      A R  R M +   QP V     +I +
Sbjct: 135 LHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDS 194

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK+    + AF +F +M  +G +PD +TY +L++ LC L +      L  +M      P
Sbjct: 195 LCKDRQVTE-AFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILP 253

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV ++++++ LC+   V EA  + + M  +GVEP+V TY++LMDG C      +A+++ 
Sbjct: 254 DVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF 313

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEG----KLQE---------------AVEIL--DRMK 323
            MM+ K   P++++Y+TL+N   K+G     LQE               AVE++  D+MK
Sbjct: 314 DMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKDKMK 373

Query: 324 L-------------QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           L               + P+  ++  ++   C  GK  EA + +D M+  G+ PN
Sbjct: 374 LFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPN 428



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 142/296 (47%), Gaps = 8/296 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T+D A   F  + +    P    +  L+  + ++        L  +M++    P V T  
Sbjct: 25  TLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN 84

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN  C    V  A  +  ++   G +P+  T+++L+ GLC  G   +A+ L   MI +
Sbjct: 85  ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 144

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN+VTY TL+NGLCK G    A+ +L  M+    +PD  +Y  II   C   +  EA
Sbjct: 145 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 204

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
            N   +MV  GI+P+  T++       ++V  LC     +     L+ M N  I  D + 
Sbjct: 205 FNLFSQMVGQGISPDIFTYT-------SLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 257

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +S+++   CK+G + ++  IVD ++  G  PD  T++ +M     + +M +A ++ 
Sbjct: 258 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF 313



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 139/314 (44%), Gaps = 41/314 (13%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIR    E  + +AL +FD    E   GF+ +  T+  +I+ L        A  LL  + 
Sbjct: 121 LIRGLCVEGKIGEALHLFDKMIDE---GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 177

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +  C     I+ SI     +  +  +A  +F +M   G  P   +Y +++  L    + K
Sbjct: 178 QGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWK 237

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                   M    I P V   + ++ ALCK  G +  A +I   M  RG  PD  TY TL
Sbjct: 238 HVTTLLNQMVNSKILPDVVIFSTVVDALCK-EGKVTEAHEIVDMMIQRGVEPDVVTYTTL 296

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN-------GLCQSKSV-------- 242
           ++G C   ++ EA ++F  M  K  +P V++YT+LIN       GL   + V        
Sbjct: 297 MDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETP 356

Query: 243 ------------EEAMRLFE-------EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
                       ++ M+LFE       EM +  + PNV  +S+++D LCK G   +A ++
Sbjct: 357 DAVKGGAVEVIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDV 416

Query: 284 LQMMISKRHRPNIV 297
           + MMI +   PN V
Sbjct: 417 VDMMIKRGVEPNAV 430


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 214/454 (47%), Gaps = 48/454 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDK 110
           T+ ++I     A +       L  V K+   +    F  + +G     R  DAM  V  +
Sbjct: 89  TYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRR 148

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---REIGIQPCVASLNVLIKALCK 167
           M E  C P   S   +L  L +EN+ + A      M   R  G  P V S   +I    K
Sbjct: 149 MTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFK 208

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G  D A+  + EM +R  +PD  TY ++I  LC+   + +A E+   M      P  +
Sbjct: 209 -EGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCM 267

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY S+++G C S+  +EA+   ++MRS GVEP+V TY+SLMD LCK G S++A ++   M
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM 327

Query: 288 ISKRHRPNIVTYSTLLNGLCKEG-----------------------------------KL 312
             +   P+I TY TLL G   +G                                   K+
Sbjct: 328 TKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKV 387

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA+ +  +M+  GL P+   YG +I   C  G   +A  + ++M+  G+TPN       
Sbjct: 388 DEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN------- 440

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           I ++ +++  LC  D  ++A ++ L M +R I ++++ ++S+I   CK+G + +S ++ D
Sbjct: 441 IIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFD 500

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +V  G  P+  T+S ++       KM +A +LL
Sbjct: 501 LMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 219/454 (48%), Gaps = 12/454 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + ++  +   + ++KA+ +    T    NG   +  T++ ++    S+ Q + A   
Sbjct: 232 VTYSSIIAALCKGQAMDKAMEVL---TTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF 288

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++  +  +     + S+     +  R  +A ++FD M + G EP   +Y T+L     
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L         M   GI P     N+LI A  K    +D A  +F +M   G  P+  
Sbjct: 349 KGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQE-KVDEAMLVFSKMRQHGLNPNVV 407

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYG +I  LC+ G + +A   F++M  +  +P ++ YTSLI+ LC     ++A  L  EM
Sbjct: 408 TYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEM 467

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+  N   ++S++   CK G   ++ +L  +M+    +PN++TYSTL++G C  GK+
Sbjct: 468 LDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM 527

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L  M   G+KPD   Y  +I+ +C + +  +A     EMV  G++PN +T+   
Sbjct: 528 DEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY--- 584

Query: 373 IRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               N ++QGL  T    A  ++Y+ +      ++  TY+ ++   CK     ++ R+  
Sbjct: 585 ----NIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQ 640

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            L L     +  T++ ++ AL    +  +A +L 
Sbjct: 641 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLF 674



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 196/416 (47%), Gaps = 46/416 (11%)

Query: 99  HRPLDAMRVFDKMKEFGC---EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           H P  A+  +++M   G     PT  +Y  ++       +L L F    ++ + G +   
Sbjct: 63  HSPAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEA 122

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            +   L+K LC +  T DA   + R M    C PD ++   L+ GLC   +  EA EL  
Sbjct: 123 ITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLH 182

Query: 216 EMETK---ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            M        +P VV+YT++ING  +    ++A   + EM  + + P+V TYSS++  LC
Sbjct: 183 MMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALC 242

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           KG    +AME+L  M+     PN +TY+++L+G C   + +EA+  L +M+  G++PD  
Sbjct: 243 KGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVV 302

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW--------------------SLH 372
            Y  ++   C  G+  EA    D M   G+ P+  T+                     L 
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLM 362

Query: 373 IR--IH------NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           +R  IH      N ++    K +  + A  V+  MR   ++ + +TY ++I   CK G +
Sbjct: 363 VRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSV 422

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTAL-----WDRRKMRQAAELLLLELMNKCV 474
             +    ++++ +G  P+   +++++ +L     WD+      AE L+LE++++ +
Sbjct: 423 DDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDK------AEELILEMLDRGI 472



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 194/436 (44%), Gaps = 46/436 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS T     G   D +T+  ++    +         LLD + +        +F  +  
Sbjct: 323 IFDSMTKR---GLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILIC 379

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +  +AM VF KM++ G  P   +Y  V+ IL +   +  A  ++  M + G+ P
Sbjct: 380 AYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439

Query: 154 CVASLNVLIKALCK--------------------------NS--------GTMDAAFKIF 179
            +     LI +LC                           NS        G +  + K+F
Sbjct: 440 NIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLF 499

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  P+  TY TLI+G C  GK+ EA +L   M +    P  VTY +LING C+ 
Sbjct: 500 DLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRV 559

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A+ LF+EM S GV PN+ TY+ ++ GL     ++ A EL   +     +  + TY
Sbjct: 560 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTY 619

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK     EA+ +   + L  L+ +   +  +I     +G+  EA +    +  
Sbjct: 620 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 679

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G+ P+  T+SL     N + QGL +        ++LSM     + +S   +S++    +
Sbjct: 680 NGLVPDVRTYSL--MAENLIEQGLLEE----LDDLFLSMEENGCTANSRMLNSIVRKLLQ 733

Query: 420 KGDIHKSA---RIVDE 432
           +GDI ++     ++DE
Sbjct: 734 RGDITRAGTYLSMIDE 749



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 165/343 (48%), Gaps = 6/343 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V+ A++ F+    E   G   +   ++ +I  L   +++  AE+L
Sbjct: 407 VTYGAVIGILCKSGSVDDAMLYFEQMIDE---GLTPNIIVYTSLIHSLCIFDKWDKAEEL 463

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C +    F SI   + +  R +++ ++FD M   G +P   +Y T++    
Sbjct: 464 ILEMLDRGIC-LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYC 522

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
              ++  A +    M  +G++P   + N LI   C+ S  MD A  +F+EM + G +P+ 
Sbjct: 523 LAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVS-RMDDALALFKEMVSSGVSPNI 581

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  ++ GL    +   AKEL+  +        + TY  +++GLC++   +EA+R+F+ 
Sbjct: 582 ITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQN 641

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +    ++    T++ ++  L K G + +A +L   + +    P++ TYS +   L ++G 
Sbjct: 642 LCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGL 701

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           L+E  ++   M+  G   ++ +   I+      G    A  +L
Sbjct: 702 LEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 744



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 123/265 (46%), Gaps = 16/265 (6%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F+E+  +    ++      +  + +  S   A+  +  M   G   V P V TY 
Sbjct: 33  DARHVFEELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYG 91

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            L+   C+ G        L  ++ K  R   +T++ LL GLC + +  +A++I L RM  
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV---LGGITPNRLTWSLHIRIHNTVVQ 381
               PD      ++   CD  + QEA   L  M     GG  P+ ++++       TV+ 
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYT-------TVIN 204

Query: 382 GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           G  K  D ++A+  Y  M +R IS D +TYSS+I   CK   + K+  ++  +V +G +P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMP 264

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
           +  T+++++       + ++A   L
Sbjct: 265 NCMTYNSILHGYCSSEQPKEAIGFL 289



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 2/248 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T+S +I     A +   A  LL  +           + ++  GY RV R  DA
Sbjct: 506 GVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDA 565

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M   G  P   +Y  +L  L    +   A   Y  + + G Q  +++ N+++  
Sbjct: 566 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHG 625

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN+ T D A ++F+ +       ++ T+  +I  L ++G+  EAK+LF  +      P
Sbjct: 626 LCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 684

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY+ +   L +   +EE   LF  M   G   N    +S++  L + G  ++A   L
Sbjct: 685 DVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL 744

Query: 285 QMMISKRH 292
             MI ++H
Sbjct: 745 S-MIDEKH 751


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/262 (38%), Positives = 157/262 (59%), Gaps = 1/262 (0%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           VFD ++++G  P+  S+ T++   + +  L   FR    M   G+QP V + +VLI  LC
Sbjct: 158 VFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLC 217

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K S  MD A ++F EM ++G  P+  T+ TLI+G C+ GK+  A E++K+M +++ SP +
Sbjct: 218 KES-KMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDL 276

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           +TY +LI GLC+   +++A  L  EM  KG++P+  TY++L+DG CK G    A E  + 
Sbjct: 277 ITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKR 336

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPD+G Y  II+ FC  G 
Sbjct: 337 MIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGD 396

Query: 347 YQEAANFLDEMVLGGITPNRLT 368
               +  L EM   G  P+ +T
Sbjct: 397 VWTGSKLLKEMQRDGHVPSVVT 418



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 209/435 (48%), Gaps = 57/435 (13%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           + +  ++Q++ + K  + A  +F +A  E     R D   FS +I+  + +   R A + 
Sbjct: 30  LEAKTLIQIVVSRKGKDSASAVF-AAILETKGTQRSDIYVFSGLITAYLESGFLRDAIEC 88

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE------PTPKSYITV 126
                + K  +  D     CR   +V   L  ++ F  +  F  E      P    +  +
Sbjct: 89  YRLTREHKFRVPFDT----CR---KVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNI 141

Query: 127 LAI-LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           L     +E +++L+   +  +R+ G++P V S N L+    +  G +D  F++   M   
Sbjct: 142 LMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQ-GDLDKGFRLKSAMHAS 200

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD YTY  LINGLC+  K+ EA ELF EM  K   P  VT+T+LI+G C++  V+ A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLA 260

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           M ++++M S+ + P++ TY++L+ GLCK G   QA  L+  M  K  +P+ +TY+TL++G
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDG 320

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
            CK+G L+ A E   RM  + ++ D   Y  +IS  C  G+  +A   L EM+  G+ P 
Sbjct: 321 SCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP- 379

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
                                                   DS TY+ +I  FCKKGD+  
Sbjct: 380 ----------------------------------------DSGTYTMIINEFCKKGDVWT 399

Query: 426 SARIVDELVLDGCLP 440
            ++++ E+  DG +P
Sbjct: 400 GSKLLKEMQRDGHVP 414



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 206/430 (47%), Gaps = 44/430 (10%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLD-RVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           FRH   ++  MI  L +      A+ L+   V+++  D    +F +I    G        
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLLEAKTLIQIVVSRKGKDSASAVFAAILETKG-------- 60

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVA 156
                         T +S I V + L+    E   L+ A   YR  RE    +    C  
Sbjct: 61  --------------TQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRK 106

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
            L  L+K            +  ++E+   G     Y +  L++  C+ G+I  ++ +F  
Sbjct: 107 VLEHLMKL-----KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDA 161

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           +      P+VV++ +L+NG  +   +++  RL   M + GV+P+V+TYS L++GLCK   
Sbjct: 162 IRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESK 221

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A EL   M+ K   PN VT++TL++G CK GK+  A+EI  +M  Q L PD   Y  
Sbjct: 222 MDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNT 281

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395
           +I   C  G  ++A N ++EM + G+ P+++T++       T++ G CK  D   AF+  
Sbjct: 282 LIYGLCKKGDLKQARNLINEMSMKGLKPDKITYT-------TLIDGSCKDGDLETAFEYR 334

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M   +I +D + Y++LI+  C++G    + +++ E++  G  PD GT++ ++     +
Sbjct: 335 KRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKK 394

Query: 456 RKMRQAAELL 465
             +   ++LL
Sbjct: 395 GDVWTGSKLL 404


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 238/490 (48%), Gaps = 31/490 (6%)

Query: 8   KWSTKITSAQVLQLI-RAEKDVNKALVIFDS-ATAEYANGFRHDNSTFSLMISKLVSANQ 65
           K ++ +TS  + Q+I   ++   +   IF     A+    + H   +   MI  L     
Sbjct: 34  KTASTLTSTTIHQVILHLKQHRYEPFFIFHFFKWAQSIPHYTHSLHSSWSMIHMLTKHRH 93

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICR-----------------GYGRVHRPLDAMRVF 108
           F+ A+ +LD++ + +   +  +  S+ R                  Y +     DA++VF
Sbjct: 94  FKTAQQVLDKMAQREILSSPSVLTSLVRIHDDPEVNSHVLSWIVIHYAKSKMTHDAVQVF 153

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M     +P   +   ++  L+++    + ++ Y+ M + G+ P +   N LI A C  
Sbjct: 154 EQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLIHA-CSK 212

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           S  ++ A  I  EM  +G  PD +TY TLI   C+ G  YEA  +  +ME +  +  +V+
Sbjct: 213 SRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVS 272

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y SLI G C+   + EAMR+F E+  K   PN  TY++L+DG CK     +A+ L +MM+
Sbjct: 273 YNSLIYGFCKEGKMREAMRMFGEI--KDAIPNHVTYTTLIDGYCKANEFEEALRLREMMV 330

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +K   P +VTY+++L  LC +G++++A ++L  M  + ++ D+     +I+ +C IG   
Sbjct: 331 AKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLN 390

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A  F  +M+  G+TPN  T+         ++ G CKT +   A ++   M +   S + 
Sbjct: 391 SALKFKTKMLEAGLTPNSFTY-------KALIHGFCKTSELESAKELLFGMLDAGFSPNY 443

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            TYS ++  +CKK +      + DE +  G   +   + A++  L    ++ + AE LL 
Sbjct: 444 RTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLCKIERI-ECAEKLLY 502

Query: 468 ELMNKCVEAE 477
            +  K +  +
Sbjct: 503 HMEGKGISGD 512



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 158/332 (47%), Gaps = 6/332 (1%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +DV +A  I +    +   G   D  T++ +I+          A  + D++ +E  ++  
Sbjct: 214 RDVERAEFILNEMEVK---GVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLDI 270

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + S+  G+ +  +  +AMR+F ++K+    P   +Y T++    + N+ + A R    
Sbjct: 271 VSYNSLIYGFCKEGKMREAMRMFGEIKD--AIPNHVTYTTLIDGYCKANEFEEALRLREM 328

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   G+ P V + N +++ LC +    DA  K+  EM  R    DS T  TLIN  C++G
Sbjct: 329 MVAKGLYPGVVTYNSILRKLCSDGRIRDAN-KLLHEMSERKVQADSVTCNTLINAYCKIG 387

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            +  A +   +M     +P   TY +LI+G C++  +E A  L   M   G  PN  TYS
Sbjct: 388 DLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESAKELLFGMLDAGFSPNYRTYS 447

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            ++D  CK   +   + L    +SK    NI  Y  L+  LCK  +++ A ++L  M+ +
Sbjct: 448 WIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLCKIERIECAEKLLYHMEGK 507

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           G+  D+ +Y  +   +   G    A++ L+EM
Sbjct: 508 GISGDSVIYTSLAFSYWKSGNTNAASDMLEEM 539



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 7/277 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  GY + +   +A+R+ + M   G  P   +Y ++L  L  + +++ A +    M 
Sbjct: 306 YTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMS 365

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E  +Q    + N LI A CK  G +++A K   +M   G TP+S+TY  LI+G C+  ++
Sbjct: 366 ERKVQADSVTCNTLINAYCK-IGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSEL 424

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             AKEL   M     SP   TY+ +++  C+  + +  + L +E  SKG   N+  Y +L
Sbjct: 425 ESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRAL 484

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +  LCK      A +LL  M  K    + V Y++L     K G    A ++L+ M  + L
Sbjct: 485 IRRLCKIERIECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDMLEEMARRRL 544

Query: 328 KPDAGLYGKIISCFCDIGKYQEAAN--FLDEMVLGGI 362
                   KI  CF  +   Q   +  F D +V  G+
Sbjct: 545 MITV----KIYRCFSALDASQNKVSQMFWDHVVERGL 577


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 188/390 (48%), Gaps = 42/390 (10%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           GCEPT  SY TV++ L   +++  A++F+  M + G +P V +   LI   CK +G    
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCK-AGQPQV 60

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLG----------------------------- 205
             K+  +   R   PD + Y ++I+G C+ G                             
Sbjct: 61  GHKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLA 119

Query: 206 ---KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
              +I EA ELF+E++T  CSP VV YT++I+GL ++  +E+ ++ FEEM      P   
Sbjct: 120 DSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRT 179

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY+ ++DGLCK      A ++ + M+ K   P+ +TY+TL++G  K  K+ EA ++LD M
Sbjct: 180 TYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVM 239

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G +P A  YG I+  FC +    EA   + +M   G  P    ++  +  +      
Sbjct: 240 LTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY------ 293

Query: 383 LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           L K     A+QV   M  R  + D + Y+SLI      G + ++  + D ++  GC PD 
Sbjct: 294 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 353

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNK 472
            T+  ++        +  A E  +LELM K
Sbjct: 354 LTYGTIIQNFSKIGNVEAAGE--ILELMAK 381



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/456 (26%), Positives = 208/456 (45%), Gaps = 66/456 (14%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++ +G     R  +A  +F+++K  GC P   +Y  V+  L++  +++   + +  M 
Sbjct: 111 YTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMS 170

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
                P   +  V+I  LCK     DA  K+F +M  +GC PD+ TY TLI+G  +  K+
Sbjct: 171 GSSCVPTRTTYTVVIDGLCKAQMLPDAC-KVFEQMVQKGCVPDTITYTTLIDGFSKASKM 229

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA++L   M TK   PT VTY S+++G C+   + EA  +  +MR +G EP +F ++SL
Sbjct: 230 DEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSL 289

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +      G + +A ++L  M ++   P+++ Y++L++ L   G++ EA  + D M  +G 
Sbjct: 290 LSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGC 349

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFL--------------------------------- 354
            PDA  YG II  F  IG  + A   L                                 
Sbjct: 350 APDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFG 409

Query: 355 --DEMVLGGITPNRLTWSLHIR-----------------------------IHNTVVQGL 383
             D MV  GI PN +T+++ +                               +  ++ GL
Sbjct: 410 VYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGL 469

Query: 384 CKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
            K    + AF  +  M +R I  +  TY+SLI    K G I ++ ++V+++V  G  PD 
Sbjct: 470 GKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDV 529

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
             +SA++T L D   +  A ++    +   C   EV
Sbjct: 530 QAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEV 565



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 212/414 (51%), Gaps = 19/414 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK- 110
           +++ +IS L S ++   A    + +    C+     F ++  G+ +  +P    ++ ++ 
Sbjct: 9   SYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQA 68

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC--VASLNVLIKALCKN 168
           +K F   P    Y +V+    +   L   +      R +  +    V S   +IK L  +
Sbjct: 69  LKRF--RPDVFLYTSVIHGYCKAGDLDTGY-----FRAVTPKASLDVISYTTVIKGLA-D 120

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           S  +D A ++F E+   GC+P+   Y  +I+GL + G+I +  + F+EM   +C PT  T
Sbjct: 121 SKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTT 180

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT +I+GLC+++ + +A ++FE+M  KG  P+  TY++L+DG  K     +A +LL +M+
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +K   P  VTY ++++G CK   + EA E++ +M+ +G +P   ++  ++S +   G+ +
Sbjct: 241 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAE 300

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDS 407
           EA   L EM   G  P+       + ++ +++  L  T     A  V+ SM  +  + D+
Sbjct: 301 EAYQVLTEMTARGCAPD-------VILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 353

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           LTY ++I  F K G++  +  I++ +   G  PD   ++++M       ++ QA
Sbjct: 354 LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQA 407



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 163/359 (45%), Gaps = 37/359 (10%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I     A++   A  LLD +  +  + T   + SI  G+ ++    +A  V 
Sbjct: 212 DTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVI 271

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M+E GCEP    + ++L+  + + + + A++    M   G  P V     LI  L  +
Sbjct: 272 AQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLF-S 330

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G +  A  +F  M  +GC PD+ TYGT+I    ++G +  A E+ + M      P    
Sbjct: 331 TGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFA 390

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM-------------------- 268
           Y SL++G  + + V++A  +++ M + G++PN  T++ LM                    
Sbjct: 391 YNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEML 450

Query: 269 ----------------DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
                           DGL K G  S+A    Q MI +   P   TY++L+  L K G++
Sbjct: 451 EKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRI 510

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
            EA ++++ M   G+ PD   Y  +I+   D      A +   EM+  G  PN +T+ +
Sbjct: 511 PEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKV 569



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 3/291 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   D   ++ +I  L S  +   A  + D + ++ C      + +I + + ++    
Sbjct: 311 ARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVE 370

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  + + M + G  P   +Y +++   V+  ++  AF  Y  M   GI+P   + NVL+
Sbjct: 371 AAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLM 430

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDS-YTYGTLINGLCRLGKIYEAKELFKEMETKA 221
             L K+ G  D AF +F+EM  +   P +  +Y  LI+GL + G++ EA   F+EM  + 
Sbjct: 431 HGLFKD-GKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRG 489

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P   TYTSLI  L ++  + EA +L E+M   GV P+V  YS+L+ GL        A 
Sbjct: 490 IIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAW 549

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           ++ Q M+ +   PN VTY  L  G    G+  + +E + +   QG+  +AG
Sbjct: 550 DVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD-LEAVKQHFSQGVAMEAG 599


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 176/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY+ + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKD-GDIRVAXSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+ L+ G
Sbjct: 232 NELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++  M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 292 LCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 352 DVAYT-------ALISGLCQEGRXVDAEKMLRXMLSV---GLKPDAXTYTMIINEFCKKG 401

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG +P   T++ +M  
Sbjct: 402 DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 154/268 (57%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK    MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++  
Sbjct: 221 GLCKEX-KMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY  LI GLC+   +++A  L  EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 280 PDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 340 RXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 427



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 202/425 (47%), Gaps = 34/425 (8%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRK-------------GKG------SAS 55

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            VF  + E   + T +S I V + L+    E   L+ A   YR  RE        +   +
Sbjct: 56  XVFAAILE--TKGTQRSDIYVFSGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKV 113

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           ++ L K        +  ++E+   G     Y +  L++  C+ G I  A  +F  +    
Sbjct: 114 LEHLMKLK-YFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWG 172

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK      A 
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDAN 232

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +I   
Sbjct: 233 ELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGL 292

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C  G  ++A + + EM + G+ P+++T++       T++ G CK  + B AF+    M  
Sbjct: 293 CKKGDLKQANDLIXEMSMKGLKPDKITYT-------TLIDGCCKEGNLBTAFEHRXRMIE 345

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
            +I +D + Y++LI+  C++G    + +++  ++  G  PD  T++ ++     +  + +
Sbjct: 346 ENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWK 405

Query: 461 AAELL 465
            ++LL
Sbjct: 406 GSKLL 410



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 146/291 (50%), Gaps = 9/291 (3%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A  + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMX 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E ++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY  LI GLC+ G + +A +L  EM  K   P  +TYT+L
Sbjct: 264 DLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNV----FTYSSLMDGLCKGGCSSQAMELLQMMI 288
           I+G C+  +++ A     E R + +E N+      Y++L+ GLC+ G    A ++L+ M+
Sbjct: 324 IDGCCKEGNLBTAF----EHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXML 379

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           S   +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 380 SVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 1/236 (0%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           F   +A  A+G + D  T+S++I+ L    +   A +L D +  +        F ++  G
Sbjct: 197 FRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDG 256

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           + +  R   AM ++ +M      P   +Y  ++  L ++  LK A      M   G++P 
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPD 316

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             +   LI   CK  G +B AF+    M       D   Y  LI+GLC+ G+  +A+++ 
Sbjct: 317 KITYTTLIDGCCKE-GNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKML 375

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           + M +    P   TYT +IN  C+   V +  +L +EM+  G  P+V TY+ LM+G
Sbjct: 376 RXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 176/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 99  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 157

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 158 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 217

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 218 NELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYG 277

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 278 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 337

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 338 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---DLKPDTGTYTMIINEFCKKG 387

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG  P   T++ +M  
Sbjct: 388 DVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 157/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 147 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 206

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K M +++  
Sbjct: 207 GLCKES-KMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLL 265

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+ FTY++L+DG CK G    A E 
Sbjct: 266 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEH 325

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M    LKPD G Y  II+ FC 
Sbjct: 326 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCK 385

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 386 KGDVWKGSKLLKEMQRDGHAPSVVTYNV 413



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 202/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 1   FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRK-------------GKG------SAS 41

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I V + L+    E    + A   YR  RE    +    C   
Sbjct: 42  AVFATILE--TKGTQRSDIYVFSGLITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKV 99

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 100 LEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 154

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 155 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 214

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  RM  Q L PD   Y  +
Sbjct: 215 DDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTL 274

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P++ T++       T++ G CK  D + AF+   
Sbjct: 275 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYT-------TLIDGCCKEGDLDTAFEHRK 327

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++     PD GT++ ++     + 
Sbjct: 328 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKG 387

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 388 DVWKGSKLL 396



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 145/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 131 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 190

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 191 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKN-GRV 249

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I++ M ++   PD  TY TLI GLC+ G + +A +L  EM  K   P   TYT+L
Sbjct: 250 DLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 309

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 310 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDL 369

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 370 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMN 416



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 1/203 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M   G  P   ++ T++    +  ++ LA   Y+ M    + P + + N LI
Sbjct: 216 DANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLI 275

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +  A  +  EM  +G  PD +TY TLI+G C+ G +  A E  K M  +  
Sbjct: 276 YGLCKK-GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 334

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V YT+LI+GLCQ     +A ++  EM S  ++P+  TY+ +++  CK G   +  +
Sbjct: 335 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSK 394

Query: 283 LLQMMISKRHRPNIVTYSTLLNG 305
           LL+ M    H P++VTY+ L+NG
Sbjct: 395 LLKEMQRDGHAPSVVTYNVLMNG 417


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 213/419 (50%), Gaps = 18/419 (4%)

Query: 56  MISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKE 113
           +++ L  A +F+    LL  +  ++ DI  ++  F  +     +  R  +A+ VF+KM  
Sbjct: 311 LLTALGRAREFKRMNTLLAEM--KEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNG 368

Query: 114 -----FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR-EIGIQPCVASLNVLIKALCK 167
                F  EP   +Y T++  L +  + +        MR +    P   + N LI   CK
Sbjct: 369 GESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCK 428

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
            S  ++AA ++F +M   G  P+  T  TL++G+C+ G+I  A E F EM+ K      V
Sbjct: 429 AS-MIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAV 487

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TYT+LI   C   ++E+AM LF+EM   G  P+   Y +L+ GL + G   +A  +L  M
Sbjct: 488 TYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKM 547

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                 P+IV+++ L+NG C++ KL EA E+L  M+  G+KPD   Y  +IS F   G +
Sbjct: 548 KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDF 607

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS-ISVD 406
             A   + +MV  G+ P  +T+     IH   + G    + + A +++  M + S +  +
Sbjct: 608 STAHRLMKKMVKEGLVPTVVTYG--ALIHAYCLNG----NLDEAMKIFRDMSSTSKVPPN 661

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ Y+ LI   C+K  +  +  ++D++ + G  P+  T++A+   L ++  + +A EL+
Sbjct: 662 TVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELM 720



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 203/448 (45%), Gaps = 90/448 (20%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS---YITVLAI---------LVEE 133
           +I + +    GRV    DA+ + D+M +   E  P S   +I   A+         + EE
Sbjct: 196 NILIDVLFRKGRVD---DALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEE 252

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
             + L  +F  H     + P    L  LI  LC+ SG  D A+ +   +   G   ++ +
Sbjct: 253 EIVGLVSKFAEH----EVFPNSIWLTQLISRLCR-SGRTDRAWDVLHGLMKLGGVMEAAS 307

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM- 252
              L+  L R  +      L  EM+     P VVT+  LIN LC+ + V+EA+ +FE+M 
Sbjct: 308 CNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMN 367

Query: 253 --RSKG--VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH---------------- 292
              S G  VEP+V TY++L+DGLCK G   + + L++ M S+                  
Sbjct: 368 GGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYC 427

Query: 293 --------------------RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
                                PN+VT +TL++G+CK G++  AVE  + M+ +GLK +A 
Sbjct: 428 KASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAV 487

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW----------------------- 369
            Y  +I  FC++   ++A    DEM+  G +P+ + +                       
Sbjct: 488 TYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKM 547

Query: 370 -----SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                S  I   N ++ G C+ +  + A+++   M N  I  D +TY++LI+ F K GD 
Sbjct: 548 KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDF 607

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTA 451
             + R++ ++V +G +P   T+ A++ A
Sbjct: 608 STAHRLMKKMVKEGLVPTVVTYGALIHA 635



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 132/244 (54%), Gaps = 2/244 (0%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++ R +  V+    AM +FD+M E GC P    Y T+++ L +  +L  A      M+
Sbjct: 489 YTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMK 548

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G  P + S NVLI   C+ +  +D A+++ +EM N G  PD  TY TLI+   + G  
Sbjct: 549 EAGFSPDIVSFNVLINGFCRKN-KLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDF 607

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSS 266
             A  L K+M  +   PTVVTY +LI+  C + +++EAM++F +M S   V PN   Y+ 
Sbjct: 608 STAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNI 667

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L++ LC+      A+ L+  M  K  +PN  T++ +  GL ++  L +A E++DRM    
Sbjct: 668 LINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHA 727

Query: 327 LKPD 330
             PD
Sbjct: 728 CNPD 731



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 178/382 (46%), Gaps = 40/382 (10%)

Query: 26  KDVNKALVIFDSATAEYANGF--RHDNSTFSLMISKLVSANQFRPAEDLLDRV-NKEKCD 82
           + V++AL +F+      +NGF    D  T++ +I  L    +      L++R+ ++ +C 
Sbjct: 354 RRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCM 413

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
                +  +  GY +      A  +FD+M + G  P   +  T++  + +  ++  A  F
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +  M+  G++    +   LI+A C N   ++ A ++F EM   GC+PD+  Y TLI+GL 
Sbjct: 474 FNEMQGKGLKGNAVTYTALIRAFC-NVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLS 532

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           + GK+  A  +  +M+    SP +V++  LING C+   ++EA  + +EM + G++P+  
Sbjct: 533 QAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGV 592

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI---- 318
           TY++L+    K G  S A  L++ M+ +   P +VTY  L++  C  G L EA++I    
Sbjct: 593 TYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDM 652

Query: 319 --------------------------------LDRMKLQGLKPDAGLYGKIISCFCDIGK 346
                                           +D MK++G+KP+   +  +     +   
Sbjct: 653 SSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNW 712

Query: 347 YQEAANFLDEMVLGGITPNRLT 368
             +A   +D M      P+ +T
Sbjct: 713 LSKAFELMDRMTEHACNPDYIT 734



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 135/285 (47%), Gaps = 5/285 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +N A+  F+    +   G + +  T++ +I    + N    A +L D + +  C     +
Sbjct: 467 INGAVEFFNEMQGK---GLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIV 523

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G  +  +   A  V  KMKE G  P   S+  ++     +N+L  A+   + M 
Sbjct: 524 YYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEME 583

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             GI+P   + N LI    K +G    A ++ ++M   G  P   TYG LI+  C  G +
Sbjct: 584 NAGIKPDGVTYNTLISHFSK-TGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNL 642

Query: 208 YEAKELFKEME-TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
            EA ++F++M  T    P  V Y  LIN LC+   V+ A+ L ++M+ KGV+PN  T+++
Sbjct: 643 DEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNA 702

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +  GL +    S+A EL+  M      P+ +T   L   L   G+
Sbjct: 703 MFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGE 747



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 12/271 (4%)

Query: 21  LIRAEKDVN---KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIRA  +VN   KA+ +FD        G   D   +  +IS L  A +   A  +L ++ 
Sbjct: 492 LIRAFCNVNNIEKAMELFDEMLEA---GCSPDAIVYYTLISGLSQAGKLDRASFVLSKM- 547

Query: 78  KEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
            ++   + DI  F  +  G+ R ++  +A  +  +M+  G +P   +Y T+++   +   
Sbjct: 548 -KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGD 606

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTY 194
              A R  + M + G+ P V +   LI A C N G +D A KIFR+M +     P++  Y
Sbjct: 607 FSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLN-GNLDEAMKIFRDMSSTSKVPPNTVIY 665

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
             LIN LCR  ++  A  L  +M+ K   P   T+ ++  GL +   + +A  L + M  
Sbjct: 666 NILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTE 725

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
               P+  T   L + L   G +++    +Q
Sbjct: 726 HACNPDYITMEILTEWLSAVGETAKLKSFVQ 756



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 2/180 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ +IS       F  A  L+ ++ KE    T   + ++   Y       +A
Sbjct: 586 GIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEA 645

Query: 105 MRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           M++F  M       P    Y  ++  L  +NQ+ LA      M+  G++P   + N + K
Sbjct: 646 MKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFK 705

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L +    +  AF++   M    C PD  T   L   L  +G+  + K   +  E  A +
Sbjct: 706 GL-QEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGETAKLKSFVQGYEVSASA 764


>gi|15220591|ref|NP_172051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334182311|ref|NP_001184914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213450|sp|Q9SYK1.1|PPR11_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g05600
 gi|4836924|gb|AAD30626.1|AC007153_18 Hypothetical protein [Arabidopsis thaliana]
 gi|53828567|gb|AAU94393.1| At1g05600 [Arabidopsis thaliana]
 gi|56790224|gb|AAW30029.1| At1g05600 [Arabidopsis thaliana]
 gi|332189741|gb|AEE27862.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189742|gb|AEE27863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 253/482 (52%), Gaps = 28/482 (5%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN 64
           ++ +W   +T + + Q+++ +K+   AL +F+ A   + + + H+ S ++ MI  L  +N
Sbjct: 2   SVVRWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPS-YGHNGSVYATMIDILGKSN 60

Query: 65  QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124
           +    + +++R+ ++ C+  + +F S+ R + R  R  DA+ +F  + EF C     S+ 
Sbjct: 61  RVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFD 120

Query: 125 TVLAILVEENQLKLA---FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           T+L  +V+E++L+ A   FR Y +  E+  +  + +LN+L+K LC+ + + D A ++F+E
Sbjct: 121 TLLQEMVKESELEAACHIFRKYCYGWEVNSR--ITALNLLMKVLCQVNRS-DLASQVFQE 177

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL----FKEMETKACSPTVVTYTSLINGLC 237
           M  +GC PD  +Y  L+ G C  GK+ EA  L    F  +  K     +V Y  L++ LC
Sbjct: 178 MNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKGSGEDIVVYRILLDALC 237

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME----LLQMMISKRHR 293
            +  V++A+ +  ++  KG++     Y  +  G  +   SS+ +E    LL   + +   
Sbjct: 238 DAGEVDDAIEILGKILRKGLKAPKRCYHHIEAGHWES--SSEGIERVKRLLTETLIRGAI 295

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P + +YS +   L +EGKL E  E+L  M+ +G +P   +YG  +   C  GK +EA + 
Sbjct: 296 PCLDSYSAMATDLFEEGKLVEGEEVLLAMRSKGFEPTPFIYGAKVKALCRAGKLKEAVSV 355

Query: 354 LD-EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS--VDSLTY 410
           ++ EM+ G   P        + ++N +++GLC    +     YL   ++ +S   +  TY
Sbjct: 356 INKEMMQGHCLPT-------VGVYNVLIKGLCDDGKSMEAVGYLKKMSKQVSCVANEETY 408

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
            +L+   C+ G   +++++++E+++    P   T+  ++  L D  + R  A + L E++
Sbjct: 409 QTLVDGLCRDGQFLEASQVMEEMLIKSHFPGVETYHMMIKGLCDMDR-RYEAVMWLEEMV 467

Query: 471 NK 472
           ++
Sbjct: 468 SQ 469



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 7/200 (3%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  PC+ S + +   L +  G +    ++   M ++G  P  + YG  +  LCR GK+ E
Sbjct: 293 GAIPCLDSYSAMATDLFEE-GKLVEGEEVLLAMRSKGFEPTPFIYGAKVKALCRAGKLKE 351

Query: 210 AKELF-KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE--PNVFTYSS 266
           A  +  KEM    C PTV  Y  LI GLC      EA+   ++M SK V    N  TY +
Sbjct: 352 AVSVINKEMMQGHCLPTVGVYNVLIKGLCDDGKSMEAVGYLKKM-SKQVSCVANEETYQT 410

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DGLC+ G   +A ++++ M+ K H P + TY  ++ GLC   +  EAV  L+ M  Q 
Sbjct: 411 LVDGLCRDGQFLEASQVMEEMLIKSHFPGVETYHMMIKGLCDMDRRYEAVMWLEEMVSQD 470

Query: 327 LKPDAGLYGKIIS--CFCDI 344
           + P++ ++  +    CFC I
Sbjct: 471 MVPESSVWKALAESVCFCAI 490



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 140/317 (44%), Gaps = 46/317 (14%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK----LAFRFYRHMREIGIQ 152
           +V+R   A +VF +M   GC P   SY  ++     E +L+    L +  +  + + G  
Sbjct: 164 QVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKGSG 223

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIF--------------------------------- 179
             +    +L+ ALC ++G +D A +I                                  
Sbjct: 224 EDIVVYRILLDALC-DAGEVDDAIEILGKILRKGLKAPKRCYHHIEAGHWESSSEGIERV 282

Query: 180 ----REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
                E   RG  P   +Y  +   L   GK+ E +E+   M +K   PT   Y + +  
Sbjct: 283 KRLLTETLIRGAIPCLDSYSAMATDLFEEGKLVEGEEVLLAMRSKGFEPTPFIYGAKVKA 342

Query: 236 LCQSKSVEEAMRLF-EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR- 293
           LC++  ++EA+ +  +EM      P V  Y+ L+ GLC  G S +A+  L+ M SK+   
Sbjct: 343 LCRAGKLKEAVSVINKEMMQGHCLPTVGVYNVLIKGLCDDGKSMEAVGYLKKM-SKQVSC 401

Query: 294 -PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
             N  TY TL++GLC++G+  EA ++++ M ++   P    Y  +I   CD+ +  EA  
Sbjct: 402 VANEETYQTLVDGLCRDGQFLEASQVMEEMLIKSHFPGVETYHMMIKGLCDMDRRYEAVM 461

Query: 353 FLDEMVLGGITPNRLTW 369
           +L+EMV   + P    W
Sbjct: 462 WLEEMVSQDMVPESSVW 478



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 15/236 (6%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116
           + +L++    R A   LD  +    D+ E+         G++   ++   V   M+  G 
Sbjct: 282 VKRLLTETLIRGAIPCLDSYSAMATDLFEE---------GKL---VEGEEVLLAMRSKGF 329

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           EPTP  Y   +  L    +LK A     + M +    P V   NVLIK LC +  +M+A 
Sbjct: 330 EPTPFIYGAKVKALCRAGKLKEAVSVINKEMMQGHCLPTVGVYNVLIKGLCDDGKSMEAV 389

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             + +      C  +  TY TL++GLCR G+  EA ++ +EM  K+  P V TY  +I G
Sbjct: 390 GYLKKMSKQVSCVANEETYQTLVDGLCRDGQFLEASQVMEEMLIKSHFPGVETYHMMIKG 449

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LC      EA+   EEM S+ + P    + +L + +C   C+   +E+L+ +IS +
Sbjct: 450 LCDMDRRYEAVMWLEEMVSQDMVPESSVWKALAESVC--FCAIDVVEILEHLISSK 503


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 225/489 (46%), Gaps = 50/489 (10%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +L+ +       +A+ + D   A+   G   +  T++++I+ +    +   A + 
Sbjct: 181 VTYTVLLEAVCKSTGFGQAMEVLDEMRAK---GCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L+R++          + ++ +G     R  D   +F +M E  C P   ++  ++     
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              ++ A +    M   G        N++I  +CK  G +D AF+    M + GC+PD+ 
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK-QGRVDDAFQFLNNMGSYGCSPDTI 356

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +Y T++ GLCR  +  +AKEL KEM  K C P  VT+ + I  LCQ   +E+A  L E+M
Sbjct: 357 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 416

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
              G E N+ TY++L++G C  G    A+EL   M  K   PN +TY+TLL GLC   +L
Sbjct: 417 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERL 473

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
             A E+L  M  +   P+   +  ++S FC  G   EA   +++M+  G TPN +T+   
Sbjct: 474 DAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITY--- 530

Query: 373 IRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLIT---------------- 415
               NT++ G+ K  +   A ++   + +  +S D +TYSS+I                 
Sbjct: 531 ----NTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFH 586

Query: 416 -------------------CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
                                CK+ +   +      +V +GC+P+E T+  ++  L +  
Sbjct: 587 IVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANED 646

Query: 457 KMRQAAELL 465
            +++  +LL
Sbjct: 647 FLKETRDLL 655



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 222/465 (47%), Gaps = 19/465 (4%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S    +A++ +LI A  D+ +A  + D AT+    G   D    + +I  L    +   A
Sbjct: 42  SPNPANARLRRLI-ARDDLAEAARLVDRATSR---GEAPDVYLCTKLIRNLCRRGRTSDA 97

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
             +L    +    +    + ++  GY R +  LDA R    +      P   +Y  ++  
Sbjct: 98  ARVLRAAERSGTAVDVFAYNTLVAGYCR-YGQLDAARRL--IASMPVAPDAYTYTPIIRG 154

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L +  ++  A      M   G QP V +  VL++A+CK++G    A ++  EM  +GCTP
Sbjct: 155 LCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG-FGQAMEVLDEMRAKGCTP 213

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +  TY  +ING+CR G++ +A+E    + +    P  V+YT+++ GLC +K  E+   LF
Sbjct: 214 NIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELF 273

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            EM  K   PN  T+  L+   C+GG   +A+++L+ M       N    + ++N +CK+
Sbjct: 274 AEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ 333

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G++ +A + L+ M   G  PD   Y  ++   C   ++++A   L EMV     PN +T+
Sbjct: 334 GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTF 393

Query: 370 SLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  NT +  LC K    +A  +   M      V+ +TY++L+  FC +G +  +  
Sbjct: 394 -------NTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           +   +    C P+  T++ ++T L +  ++  AAELL   L   C
Sbjct: 447 LFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDC 488



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 174/361 (48%), Gaps = 12/361 (3%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           +P      L  L+  + L  A R        G  P V     LI+ LC+   T DAA ++
Sbjct: 42  SPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAA-RV 100

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
            R     G   D + Y TL+ G CR G++  A+ L   M     +P   TYT +I GLC 
Sbjct: 101 LRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPV---APDAYTYTPIIRGLCD 157

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
              V EA+ L ++M  +G +P+V TY+ L++ +CK     QAME+L  M +K   PNIVT
Sbjct: 158 RGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVT 217

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y+ ++NG+C+EG++ +A E L+R+   G +PD   Y  ++   C   ++++      EM+
Sbjct: 218 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 277

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
                PN +T+ + +R         C+     RA QV   M     + ++   + +I   
Sbjct: 278 EKNCMPNEVTFDMLVRF-------FCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 330

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           CK+G +  + + ++ +   GC PD  +++ V+  L    +   A ELL   +   C   E
Sbjct: 331 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 390

Query: 478 V 478
           V
Sbjct: 391 V 391



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 208/424 (49%), Gaps = 24/424 (5%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICR--GYGRVHRPL 102
           D  T++ +I  L    +   A  LLD +    C    +T  + L ++C+  G+G+     
Sbjct: 144 DAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQ----- 198

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            AM V D+M+  GC P   +Y  ++  +  E ++  A  F   +   G QP   S   ++
Sbjct: 199 -AMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 257

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K LC      D   ++F EM  + C P+  T+  L+   CR G +  A ++ ++M    C
Sbjct: 258 KGLCAAKRWEDVE-ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGC 316

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +        +IN +C+   V++A +    M S G  P+  +Y++++ GLC+      A E
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKE 376

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+ K   PN VT++T +  LC++G +++A  ++++M   G + +   Y  +++ FC
Sbjct: 377 LLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC 436

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G+   A      M      PN +T++       T++ GLC  +  + A ++   M  +
Sbjct: 437 VQGRVDSALELFYSM---PCKPNTITYT-------TLLTGLCNAERLDAAAELLAEMLQK 486

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             + + +T++ L++ FC+KG + ++  +V++++  GC P+  T++ ++  +       +A
Sbjct: 487 DCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEA 546

Query: 462 AELL 465
            ELL
Sbjct: 547 LELL 550



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 161/340 (47%), Gaps = 10/340 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G   D  +++ ++  L  A ++  A++LL  + ++ C   ++T + F+ I    G + + 
Sbjct: 350 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQ- 408

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A  + ++M E GCE    +Y  ++     + ++  A   +  M     +P   +   L
Sbjct: 409 --ATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTL 463

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LC N+  +DAA ++  EM  + C P+  T+  L++  C+ G + EA EL ++M    
Sbjct: 464 LTGLC-NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C+P ++TY +L++G+ +  + EEA+ L   + S GV P++ TYSS++  L +     +A+
Sbjct: 523 CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 582

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++  ++     RP  V Y+ +L  LCK      A++    M   G  P+   Y  +I   
Sbjct: 583 KMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL 642

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
            +    +E  + L E+   G+    L      +  N  V 
Sbjct: 643 ANEDFLKETRDLLRELCSRGVLNKNLLEEWRPKFSNQTVH 682


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 188/369 (50%), Gaps = 30/369 (8%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           KM + G  P+  +  ++L    + N+ + A      M   G  P V   N +I  LCKN 
Sbjct: 139 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 198

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             ++ A ++F  M  +G   D+ TY TLI+GL   G+  +A  L ++M  +   P V+ +
Sbjct: 199 -DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFF 257

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           T+LI+   +  ++ EA  L++EM  + V PNVFTY+SL++G C  GC   A  +  +M+S
Sbjct: 258 TALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS 317

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   P++VTY+TL+ G CK  ++++ +++   M  QGL  DA  Y  +I  +C  GK   
Sbjct: 318 KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNV 377

Query: 350 AANFLDEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQ 381
           A    + MV  G++P+ +T+++                             I  +N ++Q
Sbjct: 378 AQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQ 437

Query: 382 GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLC+TD    A+ ++ S+  + +  D++ Y ++I+  C+KG   ++ ++   +  DG +P
Sbjct: 438 GLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMP 497

Query: 441 DEGTWSAVM 449
            E  +   +
Sbjct: 498 SERIYDETL 506



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 195/384 (50%), Gaps = 12/384 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F +M +    P+   +  VL ++ + N+  +    Y  M  +GI   + S  +LI
Sbjct: 62  DAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI 121

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  A  +  +M   G  P   T G+L+NG C+  +  EA  L   M+    
Sbjct: 122 HCFCR-CSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGF 180

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y ++INGLC+++ +  A+ +F  M  KG+  +  TY++L+ GL   G  + A  
Sbjct: 181 VPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAAR 240

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+ ++  PN++ ++ L++   KEG L EA  +   M  + + P+   Y  +I+ FC
Sbjct: 241 LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFC 300

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G   +A    D MV  G  P+ +T+       NT++ G CK+       +++  M  +
Sbjct: 301 IHGCLGDAKYMFDLMVSKGCFPDVVTY-------NTLITGFCKSKRVEDGMKLFCEMTYQ 353

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D+ TY++LI  +C+ G ++ + ++ + +V  G  PD  T++ ++  L +  K+ +A
Sbjct: 354 GLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKA 413

Query: 462 AELLLLELMNKCVEAEVDIQNQDV 485
             L+++E + K  E +VDI   ++
Sbjct: 414 --LVMVEDLQKS-EMDVDIITYNI 434



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 142/289 (49%), Gaps = 1/289 (0%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  G     R  DA R+   M +   +P    +  ++   V+E  L  A   Y+ M   
Sbjct: 224 TLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRR 283

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            + P V + N LI   C +    DA + +F  M ++GC PD  TY TLI G C+  ++ +
Sbjct: 284 SVVPNVFTYNSLINGFCIHGCLGDAKY-MFDLMVSKGCFPDVVTYNTLITGFCKSKRVED 342

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
             +LF EM  +       TY +LI+G CQ+  +  A ++F  M   GV P++ TY+ L+D
Sbjct: 343 GMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLD 402

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            LC  G   +A+ +++ +       +I+TY+ ++ GLC+  KL+EA  +   +  +G+KP
Sbjct: 403 CLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKP 462

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           DA  Y  +IS  C  G  +EA      M   G  P+   +   +R H T
Sbjct: 463 DAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYT 511



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 148/294 (50%), Gaps = 6/294 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D AF +F EM      P    +  ++  + ++ K      L+ +ME    S  + ++T 
Sbjct: 60  FDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTI 119

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+  C+   +  A+ L  +M   G  P++ T  SL++G C+G    +A+ L+  M    
Sbjct: 120 LIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFG 179

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN+V Y+T++NGLCK   L  A+E+   M+ +G++ DA  Y  +IS   + G++ +AA
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 239

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
             L +MV   I PN + ++  I   +T V+   + +   A  +Y  M  RS+  +  TY+
Sbjct: 240 RLLRDMVKRKIDPNVIFFTALI---DTFVK---EGNLLEARNLYKEMIRRSVVPNVFTYN 293

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           SLI  FC  G +  +  + D +V  GC PD  T++ ++T     +++    +L 
Sbjct: 294 SLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLF 347



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 1/154 (0%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  GY +  +   A +VF++M + G  P   +Y  +L  L    +++ A      +++ 
Sbjct: 364 TLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS 423

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            +   + + N++I+ LC+ +  +  A+ +FR +  +G  PD+  Y T+I+GLCR G   E
Sbjct: 424 EMDVDIITYNIIIQGLCR-TDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQRE 482

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
           A +L + M+     P+   Y   +     S S E
Sbjct: 483 ADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAE 516


>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 527

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 201/386 (52%), Gaps = 14/386 (3%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIF---DSATAEYANGFRHDNSTFSLMISKLV 61
           T  K    I+  ++  L+R +KD   AL +F   + +++E    FR+   ++ L+ISKL 
Sbjct: 67  TQMKTQKPISPFRLSSLLRLQKDPTLALQLFLNPNPSSSEPPKPFRYSLLSYDLIISKLG 126

Query: 62  SANQFRPAEDLLDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
            A  F   E++L ++ +E +    E IF ++   YGR H P  A +VF+++  F C+ T 
Sbjct: 127 RAKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKRTV 186

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           KS  ++LA L++  QL+   + +  +   G  P   + N+LI A C   G +DA + +F 
Sbjct: 187 KSVNSLLAALLKNRQLEKMTQVFVDISNYG-SPDACTFNILIHAACL-CGDLDAVWGVFD 244

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQS 239
           EM  RG  P+  T+GTLI GL    K+ EA  L ++M +     P    YT+LI G C  
Sbjct: 245 EMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGV 304

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +  A +L EEM +  V+     YS+L+  L K G   +  ++L+ M     +P+ VTY
Sbjct: 305 GELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTY 364

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + ++NG CKE  L+ A  ++D M  +G KPD   +  II   C  GK  +A + L++M  
Sbjct: 365 NAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPR 424

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCK 385
            G  P+ L++ +       +  GLC+
Sbjct: 425 RGCPPDVLSYRI-------IFDGLCE 443



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 149/277 (53%), Gaps = 9/277 (3%)

Query: 102 LDAM-RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLN 159
           LDA+  VFD+M++ G +P   ++ T++  L   ++LK A R    M ++  I+P  +   
Sbjct: 236 LDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYT 295

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            LIK  C   G ++ AFK+  EM        S  Y TLI+ L + G+  E  ++ +EM  
Sbjct: 296 TLIKGFC-GVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGE 354

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
             C P  VTY ++ING C+   +E A R+ +EM  KG +P+VF++++++  LCK G   +
Sbjct: 355 NGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDK 414

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           AM+LL+ M  +   P++++Y  + +GLC+  +L+EA  ILD M  +G  P      K++ 
Sbjct: 415 AMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVD 474

Query: 340 CFCDIGKYQEAANFLDEMVLGGI-TPNRLTWSLHIRI 375
             C     QE    L  M+L  +   NR+   +  R+
Sbjct: 475 RLC-----QECNMELLWMILNSLGRGNRMNMDMWARV 506



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 133/258 (51%), Gaps = 10/258 (3%)

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A ++F+ + +  C  TV +  SL+  L +++ +E+  ++F ++ + G  P+  T++ L+ 
Sbjct: 170 AFQVFERIPSFRCKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYG-SPDACTFNILIH 228

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLK 328
             C  G       +   M  +  +PN+VT+ TL+ GL    KL+EA+ + + M K+  +K
Sbjct: 229 AACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIK 288

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           P+A +Y  +I  FC +G+   A    +EMV   +        L   +++T++  L K   
Sbjct: 289 PNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNV-------KLVSAVYSTLISALFKHGR 341

Query: 389 NRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
                  L  M       D++TY+++I   CK+ D+  + R++DE+V  GC PD  +++ 
Sbjct: 342 KEEVSDILREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNT 401

Query: 448 VMTALWDRRKMRQAAELL 465
           ++  L    K+ +A +LL
Sbjct: 402 IIGWLCKEGKLDKAMDLL 419



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 1/154 (0%)

Query: 50  NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109
           ++ +S +IS L    +     D+L  + +  C      + +I  G+ + +    A RV D
Sbjct: 326 SAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMD 385

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +M E GC+P   S+ T++  L +E +L  A      M   G  P V S  ++   LC+  
Sbjct: 386 EMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCE-M 444

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             +  A  I  EM  +G  P + +   L++ LC+
Sbjct: 445 MQLKEATSILDEMIFKGYVPRNESINKLVDRLCQ 478


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 209/407 (51%), Gaps = 9/407 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  +F ++I     A +   + DLL  + +        I+ ++  G  +      A  +F
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M +FG      +Y  ++  L +    K  F  Y  M+E G+ P + + N ++  LCK+
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKD 281

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
             T DA FK+F EM  RG + +  TY TLI GLCR  K  EA E+  +M++   +P ++T
Sbjct: 282 GRTKDA-FKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLIT 340

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI+G C  + + +A+ L  +++S+G+ P++ TY+ L+ G CK G +S A ++++ M 
Sbjct: 341 YNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEME 400

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +  +P+ VTY+ L++   +   +++A+++   M+  GL PD   Y  +I  FC  G+  
Sbjct: 401 ERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMN 460

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDS 407
           EA+     MV     PN +       I+NT+V G CK   + RA +++  M  + +  + 
Sbjct: 461 EASRLFKSMVEKKFEPNEV-------IYNTMVLGYCKEGSSYRALRLFREMEEKELPPNV 513

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            +Y  +I   CK+    ++  +V++++  G  P +   + +  A  D
Sbjct: 514 ASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLISRAKND 560



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 216/425 (50%), Gaps = 12/425 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED-IFLSICRGYGRVHRP 101
            N + H  S    +IS  + + QF  +  LL  + + +   T+  ++  I   Y +    
Sbjct: 52  GNLYSHAQSLLLQVISGKIQS-QFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSL 110

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             ++  F++M + G  P    +  +L  +V  +     + F+   + I +   V S  ++
Sbjct: 111 DSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK-IKVVLDVYSFGIV 169

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IK  C+ +G ++ +F +  E+   G +P+   Y TLI+G C+ G+I +AK+LF EM    
Sbjct: 170 IKGCCE-AGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFG 228

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
                 TYT LI+GL ++   ++   ++E+M+  GV PN+ TY+ +M+ LCK G +  A 
Sbjct: 229 LVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAF 288

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   M  +    NIVTY+TL+ GLC+E K  EA E++D+MK  G+ P+   Y  +I  F
Sbjct: 289 KVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGF 348

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C + K  +A +   ++   G++P+ +T+       N +V G CK  D + A +V   M  
Sbjct: 349 CGVRKLGKALSLCRDLKSRGLSPSLVTY-------NILVSGFCKKGDTSGAGKVVKEMEE 401

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I    +TY+ LI  F +  ++ K+ ++   +   G  PD  T+S ++     + +M +
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNE 461

Query: 461 AAELL 465
           A+ L 
Sbjct: 462 ASRLF 466



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+S++I       +   A  L   + ++K +  E I+ ++  GY +      A
Sbjct: 438 GLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRA 497

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+F +M+E    P   SY  ++ +L +E + K A      M + GI P  + LN++ +A
Sbjct: 498 LRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLISRA 557


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 223/439 (50%), Gaps = 12/439 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V+ A+++ D        GF+ +  T+  ++  +  + Q   A +LL ++ + K  +    
Sbjct: 193 VSDAVLLIDRMVE---TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  I  G  +     +A  +F++M+  G +     Y T++       +     +  R M 
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           +  I P V + + LI    K  G +  A ++ +EM  RG +PD+ TY +LI+G C+  ++
Sbjct: 310 KRKITPDVVAFSALIDCFVK-EGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  +   M +K C P + T+  LING C++  +++ + LF +M  +GV  +  TY++L
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G C+ G    A EL Q M+S+R RP+IV+Y  LL+GLC  G+ ++A+EI ++++   +
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM 488

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           + D G+Y  II   C+  K  +A +    + L G+ P+       ++ +N ++ GLCK  
Sbjct: 489 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPD-------VKTYNIMIGGLCKKG 541

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A  ++  M     S +  TY+ LI     +GD  KSA++++E+   G   D  T  
Sbjct: 542 SLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVK 601

Query: 447 AVMTALWDRRKMRQAAELL 465
            V+  L D R  +   ++L
Sbjct: 602 MVVDMLSDGRLKKSFLDML 620



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 196/377 (51%), Gaps = 19/377 (5%)

Query: 87  IFLSICRGYGRVH------------RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           +F S+  G G+V             +  DA+ +F +M      P    +  + +++    
Sbjct: 27  VFSSVSDGKGKVSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTK 86

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           Q  L     + M   GI   + +L+++I   C+    +  AF    ++   G  PD+ T+
Sbjct: 87  QYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCR-KLSLAFSAMGKIIKLGYEPDTVTF 145

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            TLINGLC  G++ EA EL   M      PT++T  +L+NGLC +  V +A+ L + M  
Sbjct: 146 STLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVE 205

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G +PN  TY  ++  +CK G ++ AMELL+ M  ++ + + V YS +++GLCK+G L  
Sbjct: 206 TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A  + + M+++G K D  +Y  +I  FC  G++ + A  L +M+   ITP+ + +S  I 
Sbjct: 266 AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALID 325

Query: 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
               V +G  +     A +++  M  R IS D++TY+SLI  FCK+  + K+  ++D +V
Sbjct: 326 CF--VKEGKLR----EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 435 LDGCLPDEGTWSAVMTA 451
             GC P+  T++ ++  
Sbjct: 380 SKGCGPNIRTFNILING 396



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 222/485 (45%), Gaps = 65/485 (13%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H+  T S+MI+      +   A   + ++ K   +     F ++  G     R  +A
Sbjct: 102 GIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEA 161

Query: 105 MRVFDKMKEFGCEPT---------------------------------PK--SYITVLAI 129
           + + D+M E G +PT                                 P   +Y  VL +
Sbjct: 162 LELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKV 221

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           + +  Q  LA    R M E  I+      +++I  LCK+ G++D AF +F EM  +G   
Sbjct: 222 MCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKD-GSLDNAFNLFNEMEIKGFKA 280

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D   Y TLI G C  G+  +  +L ++M  +  +P VV +++LI+   +   + EA  L 
Sbjct: 281 DIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELH 340

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM  +G+ P+  TY+SL+DG CK     +A  +L +M+SK   PNI T++ L+NG CK 
Sbjct: 341 KEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKA 400

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
             + + +E+  +M L+G+  D   Y  +I  FC++GK + A     EMV   + P+ +++
Sbjct: 401 NLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSY 460

Query: 370 ----------------------------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
                                        L I I+N ++ G+C     + A+ ++ S+  
Sbjct: 461 KILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 520

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + +  D  TY+ +I   CKKG + ++  +  ++  DG  P+  T++ ++ A        +
Sbjct: 521 KGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATK 580

Query: 461 AAELL 465
           +A+L+
Sbjct: 581 SAKLI 585



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 152/302 (50%), Gaps = 8/302 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D    + ++M  +G   + YT   +IN  CR  K+  A     ++      P  VT+++L
Sbjct: 89  DLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTL 148

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           INGLC    V EA+ L + M   G +P + T ++L++GLC  G  S A+ L+  M+    
Sbjct: 149 INGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGF 208

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +PN VTY  +L  +CK G+   A+E+L +M+ + +K DA  Y  II   C  G    A N
Sbjct: 209 QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFN 268

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
             +EM + G   +       I I+ T+++G C     +   ++   M  R I+ D + +S
Sbjct: 269 LFNEMEIKGFKAD-------IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFS 321

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           +LI CF K+G + ++  +  E++  G  PD  T+++++       ++ +A  +L L +  
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK 381

Query: 472 KC 473
            C
Sbjct: 382 GC 383



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 148/293 (50%), Gaps = 8/293 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  +F+EM      P    +  L + + R  +     +L K+ME K  +  + T + +
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C+ + +  A     ++   G EP+  T+S+L++GLC  G  S+A+EL+  M+   H
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           +P ++T + L+NGLC  GK+ +AV ++DRM   G +P+   YG ++   C  G+   A  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
            L +M    I  + + +S+       ++ GLCK    + AF ++  M  +    D + Y+
Sbjct: 234 LLRKMEERKIKLDAVKYSI-------IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +LI  FC  G     A+++ +++     PD   +SA++       K+R+A EL
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEEL 339


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 200/393 (50%), Gaps = 32/393 (8%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  +M++    P   SY TV+    E  +L+ A +    M+  G    + +  +LI 
Sbjct: 161 AVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILID 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A CK +G MD A  + +EM ++G   D   Y +LI G C  G++   K LF E+  +  S
Sbjct: 221 AFCK-AGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDS 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  +TY +LI G C+   ++EA  +FE M  +GV PNV+TY+ L+DGLC  G + +A++L
Sbjct: 280 PCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQL 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+ K   PN+VTY+ ++N LCK+  + +A+EI++ MK +  +PD   Y  ++   C 
Sbjct: 340 LNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCA 399

Query: 344 IGKYQEAANFL-----------------DEMVLGGITPNRLTWSLHIR------------ 374
            G   EA+  L                 + ++ G    NRL  +L I             
Sbjct: 400 KGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDI 459

Query: 375 -IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              N ++    K+ D N+A +++  + N  I  +S TY+++I  FCK G ++ +  ++ +
Sbjct: 460 VTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCK 519

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + L    P    ++ ++++L  +  + QA  L 
Sbjct: 520 MRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLF 552



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 201/426 (47%), Gaps = 11/426 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           N    D  +++ +I       +   A  L + +    C  +   +  +   + +  +  +
Sbjct: 171 NSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDE 230

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM +  +MK  G E     Y +++    +  +L      +  + E G  PC  + N LI+
Sbjct: 231 AMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G +  A +IF  M  RG  P+ YTY  LI+GLC +GK  EA +L   M  K   
Sbjct: 291 GFCK-LGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEE 349

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY  +IN LC+   V +A+ + E M+ +   P+  TY+SL+ GLC  G   +A +L
Sbjct: 350 PNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKL 409

Query: 284 LQMMI--SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           L +M+  S    P++++++ L++GLCK  +L +A++I D +  +    D      +++  
Sbjct: 410 LYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNST 469

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
              G   +A     ++    I PN  T++       T++ G CKT   N A  +   MR 
Sbjct: 470 LKSGDVNKAMELWKQISNSKIVPNSDTYT-------TMIDGFCKTGMLNVAKGLLCKMRL 522

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +      Y+ L++  CKKG + ++ R+ +E+  D   PD  +++ ++        ++ 
Sbjct: 523 SELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKS 582

Query: 461 AAELLL 466
           A  LL+
Sbjct: 583 AESLLV 588



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 185/384 (48%), Gaps = 48/384 (12%)

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
            ++A LV     ++AF FYR M E        SL+ L++   +   T   A  +   M  
Sbjct: 77  NLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKT-GFAHGVLALMLK 135

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE- 243
           RG   + Y Y  L+ GLCR  +  +A  L +EM   +  P VV+Y ++I G C+ K +E 
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEK 195

Query: 244 ----------------------------------EAMRLFEEMRSKGVEPNVFTYSSLMD 269
                                             EAM L +EM+ KG+E ++  Y+SL+ 
Sbjct: 196 ALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIR 255

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G C  G   +   L   ++ +   P  +TY+TL+ G CK G+L+EA EI + M  +G++P
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRP 315

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-P 388
           +   Y  +I   C +GK +EA   L+ M+     PN +T+       N ++  LCK    
Sbjct: 316 NVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTY-------NIIINKLCKDSLV 368

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL--PDEGTWS 446
             A ++   M+ R    D++TY+SL+   C KGD+ ++++++  ++ D     PD  +++
Sbjct: 369 ADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFN 428

Query: 447 AVMTALWDRRKMRQAAEL--LLLE 468
           A++  L    ++ QA ++  LL+E
Sbjct: 429 ALIHGLCKGNRLHQALDIYDLLVE 452



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 208/439 (47%), Gaps = 20/439 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKCDITEDIFLSICRGYGRVHRP 101
           G   D   ++ +I       +    + L D V       C IT   + ++ RG+ ++ R 
Sbjct: 242 GLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAIT---YNTLIRGFCKLGRL 298

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A  +F+ M E G  P   +Y  ++  L    + K A +    M +   +P V + N++
Sbjct: 299 KEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNII 358

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ET 219
           I  LCK+S   DA  +I   M  R   PD+ TY +L+ GLC  G + EA +L   M  ++
Sbjct: 359 INKLCKDSLVADA-LEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDS 417

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
               P V+++ +LI+GLC+   + +A+ +++ +  K    ++ T + L++   K G  ++
Sbjct: 418 SYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNK 477

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           AMEL + + + +  PN  TY+T+++G CK G L  A  +L +M+L  L P    Y  ++S
Sbjct: 478 AMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLS 537

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMR 399
             C  G   +A    +EM      P+ +  S +I I  ++  G    D   A  + + M 
Sbjct: 538 SLCKKGTLDQAWRLFEEMQRDDSFPDVI--SFNIMIDGSLKAG----DIKSAESLLVGMS 591

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +  +S D  TYS LI  F K G + ++    D+++  G  PD     +V+     +  + 
Sbjct: 592 HAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVL-----KYCIS 646

Query: 460 QAAELLLLELMNKCVEAEV 478
           Q     L E + K V+ +V
Sbjct: 647 QGETDKLTEFVKKLVDKDV 665


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 186/355 (52%), Gaps = 17/355 (4%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P+   Y  +L    +E ++       + M   G+ P   + NVLI  LC +SG +D A +
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLC-DSGCLDDARE 77

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +F +MP +GC P+ Y++G L+ G CR G   +  EL  EM     SP  V Y +LI+  C
Sbjct: 78  LFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFC 137

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM----ISKRHR 293
           +    ++A +L +EMR  G+ P+V T+++ +  LC  G   +A  + + M    +    +
Sbjct: 138 KEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQ 197

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PNI+TY+ +L G CKEG L+EA  + ++MK+     +   Y   +     IGK  EA   
Sbjct: 198 PNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLV 257

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMR---NRSISVDSLTY 410
           L EMV  G+ PN       +  +N V+ GLCK      F   + MR   +  +  D++TY
Sbjct: 258 LKEMVDMGMEPN-------VYSYNIVMDGLCKN--GVLFDARMLMRLMTSSGVLPDTVTY 308

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++L+  +C  G + ++  ++ E++ DGC P+  T + ++ +LW   ++ +A ELL
Sbjct: 309 TTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELL 363



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 229/497 (46%), Gaps = 58/497 (11%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G   +  TF+++I  L  +     A +L D++ ++ C+  E  F  + RGY R     
Sbjct: 49  ASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTS 108

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
             + +  +M+  G  P    Y T+++   +E +   A +    MR+ G+ P V + N  I
Sbjct: 109 KGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARI 168

Query: 163 KALCKNSGTMDAAFKIFREMPNRGC----TPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
            ALC +SG +  A +IFR+M          P+  TY  ++ G C+ G + EA+ LF++M+
Sbjct: 169 SALC-SSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMK 227

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                    +Y   + GL +   + EA  + +EM   G+EPNV++Y+ +MDGLCK G   
Sbjct: 228 VSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLF 287

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLC------------------------------- 307
            A  L+++M S    P+ VTY+TLL+G C                               
Sbjct: 288 DARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILL 347

Query: 308 ----KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM------ 357
               KEG++ EA E+L +M  +G   D      +I   C+ GK  +A   ++ M      
Sbjct: 348 YSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSA 407

Query: 358 VLGGI----------TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            LG +          + +R      +  ++T++ GLCK      A + ++ M  +++  D
Sbjct: 408 ALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPD 467

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           S  Y   I  FCK+G I  + R++ ++   GC     T+++++  L  + ++ +    L+
Sbjct: 468 SAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYG-LI 526

Query: 467 LELMNKCVEAEVDIQNQ 483
            E+  + V  +V I N 
Sbjct: 527 DEMRERGVSPDVSIYNN 543



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/499 (24%), Positives = 212/499 (42%), Gaps = 87/499 (17%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++LM+           A  L +++   +  +  + +     G  R+ + L+A  V  +M
Sbjct: 202 TYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEM 261

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G EP   SY  V+  L +   L  A    R M   G+ P   +   L+   C ++G 
Sbjct: 262 VDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYC-HTGK 320

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTL---------------------------------- 197
           +  A  + REM   GC+P++YT   L                                  
Sbjct: 321 VSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNI 380

Query: 198 -INGLCRLGKIYEAKELFKEMET-----------------------KACSPTVVTYTSLI 233
            I+GLC  GK+ +A E+   M T                       K C P +++Y+++I
Sbjct: 381 VIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTII 440

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +GLC++  V EA + F EM  K ++P+   Y   +   CK G  S A  +L+ M  K   
Sbjct: 441 SGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCN 500

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
             + TY++L+ GL  + ++ E   ++D M+ +G+ PD  +Y  ++S  C+ G+ ++A + 
Sbjct: 501 KTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSV 560

Query: 354 LDEMVLGGITPNRLTWSLHIRI----------------------HN------TVVQGLCK 385
           LDEM+  GI+PN  ++S+ I+                       H       T  + L  
Sbjct: 561 LDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALYSLTFNELLVG 620

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            +  +A +++ +  +RS  V +  Y  LI   CK   +  ++ I+ +L+  G   D  ++
Sbjct: 621 GEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASF 680

Query: 446 SAVMTALWDRRKMRQAAEL 464
             V+  L  R    +A EL
Sbjct: 681 MPVIDGLGKRGNKHEADEL 699



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 137/279 (49%), Gaps = 17/279 (6%)

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           F E P     P  Y Y  L+    + G++     L K+M     SP   T+  LI  LC 
Sbjct: 14  FPENP-----PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCD 68

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           S  +++A  LF++M  KG EPN +++  L+ G C+ G +S+ +ELL  M      PN V 
Sbjct: 69  SGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVV 128

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM- 357
           Y+TL++  CKEGK  +A +++D M+  GL PD   +   IS  C  GK  EA+    +M 
Sbjct: 129 YNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQ 188

Query: 358 ---VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
              VLG   PN +T+       N ++ G CK      A  ++  M+     ++  +Y+  
Sbjct: 189 IDEVLGLPQPNIITY-------NLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIW 241

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +    + G + ++  ++ E+V  G  P+  +++ VM  L
Sbjct: 242 LLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGL 280



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 2/243 (0%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
            + D++ + + I       +   A  +L  + K+ C+ T   + S+  G G  ++  +  
Sbjct: 464 LQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIY 523

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            + D+M+E G  P    Y  VL+ L E  ++K A      M + GI P ++S ++LIKA 
Sbjct: 524 GLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAF 583

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK +    A  +IF E+    C      Y    N L   G++ +AKELF+    ++    
Sbjct: 584 CK-ACDFSAVDEIF-EIALNVCGHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVG 641

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
              Y  LI+ LC+ + +++A  +  ++  KG   +  ++  ++DGL K G   +A EL +
Sbjct: 642 NFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAE 701

Query: 286 MMI 288
            M+
Sbjct: 702 KMM 704


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 204/415 (49%), Gaps = 14/415 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRV-FDK 110
            FSL+I + +    F   E+ L    + KC       LSI  G  R  R  D++ V +  
Sbjct: 134 VFSLLIMEFLEMGLF---EEALWVSREMKCSPDSKACLSILNGLVR-RRRFDSVWVDYQL 189

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M   G  P    Y  +     ++       +    M  +GI+P V    + I  LC+++ 
Sbjct: 190 MISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDN- 248

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            M+ A K+F  M   G  P+ YTY  +I+G C+ G + +A  L+KE+      P VV + 
Sbjct: 249 KMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFG 308

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +L++G C+++ +  A  LF  M   GV+PN++ Y+ L+ G CK G   +A+ LL  M S 
Sbjct: 309 TLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESL 368

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++ TY+ L+NGLC E ++ EA  +  +MK + + P +  Y  +I  +C     ++A
Sbjct: 369 NLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQA 428

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
            +   EM   G+ PN +T+S       T++ G C   D   A  +Y  M  + I  D +T
Sbjct: 429 LDLCSEMTASGVEPNIITFS-------TLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVT 481

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y++LI    K+ ++ ++ R+  +++  G  P++ T++ ++   W   ++  A + 
Sbjct: 482 YTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDF 536



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 193/398 (48%), Gaps = 9/398 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +   +++ I  L   N+   AE + + + K         + ++  GY +      A
Sbjct: 229 GIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQA 288

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             ++ ++      P    + T++    +  +L  A   + HM + G+ P +   N LI  
Sbjct: 289 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHG 348

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK SG M  A  +  EM +   +PD +TY  LINGLC   ++ EA  LF++M+ +   P
Sbjct: 349 HCK-SGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFP 407

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           +  TY SLI+G C+  ++E+A+ L  EM + GVEPN+ T+S+L+DG C       AM L 
Sbjct: 408 SSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLY 467

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  K   P++VTY+ L++   KE  ++EA+ +   M   G+ P+   +  ++  F   
Sbjct: 468 FEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKE 527

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSI 403
           G+   A +F  E         R  W+ H+     +++GLC+     RA + +  MR+  I
Sbjct: 528 GRLSVAIDFYQEN-----NQQRSCWN-HVGF-TCLIEGLCQNGYILRASRFFSDMRSCGI 580

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           + D  +Y S++    ++  I  +  +  +++  G LP+
Sbjct: 581 TPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPN 618



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 129/277 (46%), Gaps = 1/277 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++++I+ L   +Q   A  L  ++  E+   +   + S+  GY + +    A+ + 
Sbjct: 373 DVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLC 432

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M   G EP   ++ T++        +K A   Y  M   GI P V +   LI A  K 
Sbjct: 433 SEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKE 492

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +  M  A +++ +M   G  P+ +T+  L++G  + G++  A + ++E   +      V 
Sbjct: 493 A-NMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVG 551

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +T LI GLCQ+  +  A R F +MRS G+ P++ +Y S++ G  +    +  M L   MI
Sbjct: 552 FTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMI 611

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
                PN++    L       G ++ A  + +  +L+
Sbjct: 612 KTGILPNLLVNQLLARFYQANGYVKSACFLTNSSRLK 648



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 8/167 (4%)

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           ++LNGL +  +          M  +GL PD  +Y  +  C    G Y +    LDEM   
Sbjct: 169 SILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSL 228

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           GI PN       + I+   +  LC+ +    A +++  M+   +  +  TYS++I  +CK
Sbjct: 229 GIKPN-------VYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCK 281

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            G++ ++  +  E+++   LP+   +  ++      R++  A  L +
Sbjct: 282 TGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFV 328


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 231/480 (48%), Gaps = 44/480 (9%)

Query: 15  SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLD 74
           SA +  L+R  +  N  L++FD   +  AN  + D   +S ++  L     F  A++++ 
Sbjct: 100 SALLNGLLRFRR-FNDVLLLFDDIVS--AN-VQPDIYIYSAVVRSLCELKDFNKAKEMIH 155

Query: 75  RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
            +   +C ++  ++  +  G  +  R  +A+ + + + + G E    +Y          N
Sbjct: 156 WMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYGKF------N 209

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           + +L F+    M E G+     + ++LI + C+  G MD A     +M         Y Y
Sbjct: 210 EAELLFK---EMGEKGLCANHITYSILIDSFCRR-GEMDNAIGFLDKMTKASIEFTVYPY 265

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            +LING C+LG    AK  F EM  K  +PTVVTYTSLI+G C      +A +++ EM +
Sbjct: 266 NSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTA 325

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           KG+ PN +T+++++ GLC+    ++A+ L   M  ++  P+ VTY+ ++ G C+ G + E
Sbjct: 326 KGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISE 385

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS---- 370
           A  +LD M  +G  PD   Y  +IS  C +G+  EA  F+D++       N + +S    
Sbjct: 386 AFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVH 445

Query: 371 ------------------------LHIRIHNTVVQGLCKTDPNRA-FQVYLSMRNRSISV 405
                                   + +  +  ++ G  +    RA F +   M N  +  
Sbjct: 446 GYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRP 505

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D++ Y+++I    K G++ ++  + D +V +GCLP+  T++A++  L  +  +   AELL
Sbjct: 506 DAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLC-KAGLMDKAELL 564



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 203/456 (44%), Gaps = 45/456 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   ++ T+S++I       +   A   LD++ K   + T   + S+  GY ++     A
Sbjct: 222 GLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAA 281

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              FD+M + G  PT  +Y ++++    E +   AF+ Y  M   GI P   +   +I  
Sbjct: 282 KYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISG 341

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC+ +  M  A ++F EM  R   P   TY  +I G CR G I EA  L  EM  K   P
Sbjct: 342 LCR-ANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVP 400

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  LI+GLC    V EA    +++     + N   YS+L+ G CK G    A+   
Sbjct: 401 DTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSAC 460

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           ++M+ +    ++V Y+ L++G  +E   +    +L  M   GL+PDA +Y  +I      
Sbjct: 461 RVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKA 520

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD----------------- 387
           G  +EA    D MV  G  PN +T++        ++ GLCK                   
Sbjct: 521 GNLKEAFGLWDIMVDEGCLPNVVTYT-------ALINGLCKAGLMDKAELLSKETLVSDV 573

Query: 388 -PN------------------RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
            PN                  +A Q++ +M  +     +++Y+ LI  FC+ G I ++ +
Sbjct: 574 TPNHITYGCFLDHLTRGGNMEKAVQLHHAML-KGFLATTVSYNILIRGFCRLGKIEEATK 632

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           ++  +  +  LPD  T+S ++     R  +++A +L
Sbjct: 633 LLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKL 668



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 195/460 (42%), Gaps = 99/460 (21%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+   DKM +   E T   Y +++    +      A  ++  M + G+ P V +   LI
Sbjct: 245 NAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLI 304

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C N G    AFK++ EM  +G +P++YT+  +I+GLCR   + EA  LF EM+ +  
Sbjct: 305 SGYC-NEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKI 363

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P+ VTY  +I G C+S ++ EA  L +EM  KG  P+ +TY  L+ GLC  G  S+A E
Sbjct: 364 MPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKE 423

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE------------------------- 317
            +  +    H+ N + YS L++G CKEG+ ++AV                          
Sbjct: 424 FVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTA 483

Query: 318 ----------ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG------ 361
                     +L  M   GL+PDA +Y  +I      G  +EA    D MV  G      
Sbjct: 484 REHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVV 543

Query: 362 -----------------------------ITPNRLTWS-----------------LHIRI 375
                                        +TPN +T+                  LH  +
Sbjct: 544 TYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAM 603

Query: 376 ----------HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
                     +N +++G C+      A ++   M +  I  D +TYS++I   CK+ ++ 
Sbjct: 604 LKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQ 663

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           ++ ++   ++  G  PD   +S ++       ++ +A EL
Sbjct: 664 EAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFEL 703



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 199/428 (46%), Gaps = 13/428 (3%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T   ++     E + +KA  +++  TA+   G   +  TF+ +IS L  AN    A 
Sbjct: 296 TVVTYTSLISGYCNEGEWHKAFKVYNEMTAK---GISPNTYTFTAIISGLCRANMMAEAI 352

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            L   + + K   +E  +  +  G+ R     +A  + D+M   G  P   +Y  +++ L
Sbjct: 353 RLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGL 412

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
               ++  A  F   + +   +      + L+   CK  G    A    R M  RG   D
Sbjct: 413 CSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCK-EGRFKDAVSACRVMVERGVAMD 471

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
              Y  LI+G  R         L KEM      P  V YT++I+   ++ +++EA  L++
Sbjct: 472 LVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWD 531

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            M  +G  PNV TY++L++GLCK G   +A  L +  +     PN +TY   L+ L + G
Sbjct: 532 IMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGG 591

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            +++AV++   M L+G       Y  +I  FC +GK +EA   L  M    I P+ +T+S
Sbjct: 592 NMEKAVQLHHAM-LKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYS 650

Query: 371 LHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                  T++   CK ++   A +++ +M ++ +  D+L YS L+   C  G++ K+  +
Sbjct: 651 -------TIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFEL 703

Query: 430 VDELVLDG 437
            DE++  G
Sbjct: 704 RDEMIRRG 711



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 166/342 (48%), Gaps = 5/342 (1%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++++A  + D    +   GF  D  T+  +IS L S  +   A++ +D ++K+   +   
Sbjct: 382 NISEAFHLLDEMVGK---GFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNM 438

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + ++  GY +  R  DA+     M E G       Y  ++     E+  +  F   + M
Sbjct: 439 CYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEM 498

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G++P       +I    K +G +  AF ++  M + GC P+  TY  LINGLC+ G 
Sbjct: 499 HNHGLRPDAVIYTNMIDRHSK-AGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGL 557

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A+ L KE      +P  +TY   ++ L +  ++E+A++L   M  KG      +Y+ 
Sbjct: 558 MDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAML-KGFLATTVSYNI 616

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+ G C+ G   +A +LL  M      P+ +TYST++   CK   LQEA+++   M  +G
Sbjct: 617 LIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKG 676

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           LKPD   Y  ++   C  G+ ++A    DEM+  G+  N +T
Sbjct: 677 LKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 150/341 (43%), Gaps = 55/341 (16%)

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           R M +    P+  T   L+NGL R  +  +   LF ++ +    P +  Y++++  LC+ 
Sbjct: 85  RLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCEL 144

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV-- 297
           K   +A  +   M     + ++  Y+ L+ GLCK     +A+E+   ++ K    N+V  
Sbjct: 145 KDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTY 204

Query: 298 ------------------------TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                                   TYS L++  C+ G++  A+  LD+M    ++     
Sbjct: 205 YGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYP 264

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT-------------WSLHIRIHN--- 377
           Y  +I+ +C +G    A  + DEM+  G+TP  +T             W    +++N   
Sbjct: 265 YNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMT 324

Query: 378 ------------TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
                        ++ GLC+ +    A +++  M+ R I    +TY+ +I   C+ G+I 
Sbjct: 325 AKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNIS 384

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++  ++DE+V  G +PD  T+  +++ L    ++ +A E +
Sbjct: 385 EAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFV 425



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 2/225 (0%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           + +G R D   ++ MI +   A   + A  L D +  E C      + ++  G  +    
Sbjct: 499 HNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLM 558

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A  +  +       P   +Y   L  L     ++ A + +  M + G      S N+L
Sbjct: 559 DKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK-GFLATTVSYNIL 617

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I+  C+  G ++ A K+   M +    PD  TY T+I   C+   + EA +L+  M  K 
Sbjct: 618 IRGFCR-LGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKG 676

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
             P  + Y+ L++G C +  +E+A  L +EM  +G+  N  T  S
Sbjct: 677 LKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHVTPKS 721


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 231/461 (50%), Gaps = 27/461 (5%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +++ +  E  +  A+ +FD  T +   G   D  T+ ++I+ L  A +   A  L
Sbjct: 78  VTVTTLVKGVWMENGIPDAVQLFDEMTEK---GLFGDAKTYGILINGLCKARKTGLAIKL 134

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPL-------DAMRVFDKMKEFGCEPTPKSYIT 125
            +++   K +   D+F      YG +   L       +A+ +F +M   G  P    Y +
Sbjct: 135 HEKM---KGNCKGDVFT-----YGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSS 186

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           ++  L    +LK A  F++ M   GI   V + N LI  L + +G           M +R
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSR-AGLWKEVTWFLNLMVDR 245

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G +PD++T+  LI+GLC+ GK+ EA+++ + M  K   P ++TY +L+NGLC    +E+A
Sbjct: 246 GFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDA 305

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            +LFE +  +G++ NVF+Y+ L++G CK     +A  L + M  K  +P+ VTY+TL+  
Sbjct: 306 TKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGA 365

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LC+ G+++ A ++   M+  G       Y  ++   C  G  +EA +    +      PN
Sbjct: 366 LCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPN 425

Query: 366 RLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
                  I + + ++ G+C+      A++ +  +    +  D++ Y+ LI   C KG + 
Sbjct: 426 -------IEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLS 478

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ +++ ++   GCLPD  T++ ++  L    ++ +A +LL
Sbjct: 479 EAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLL 519



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 190/364 (52%), Gaps = 9/364 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ S+  G  R  R  +A+  F +M+  G      +Y +++  L      K    F   M
Sbjct: 183 VYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLM 242

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            + G  P   +  +LI  LCK  G +  A +I   M ++G  PD  TY TL+NGLC +G+
Sbjct: 243 VDRGFSPDAFTFTILIDGLCK-EGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQ 301

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A +LF+ +  +     V +Y  LING C+ + ++EA RLFEEMR KG++P+  TY++
Sbjct: 302 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNT 361

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+  LC+ G    A +L   M +      + TY  LL+GLCK G L+EA+++   +K   
Sbjct: 362 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTE 421

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-K 385
            KP+  ++  ++   C  GK +EA    DE+   G+ P+ + +       N ++ GLC K
Sbjct: 422 HKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAY-------NILINGLCNK 474

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              + A ++   M  +    DS+T++ +I    K+ +IH++ ++++E+      PDE   
Sbjct: 475 GMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVT 534

Query: 446 SAVM 449
           S ++
Sbjct: 535 SMLL 538



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 186/352 (52%), Gaps = 10/352 (2%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           G EP   +  T++  +  EN +  A + +  M E G+     +  +LI  LCK   T   
Sbjct: 72  GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT-GL 130

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A K+  +M    C  D +TYG +I+ LC+ G   EA ++F EM      P VV Y+SL++
Sbjct: 131 AIKLHEKMKGN-CKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMD 189

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           GLC+   ++EA+  F+EM  +G+  +V+TY+SL+ GL + G   +    L +M+ +   P
Sbjct: 190 GLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSP 249

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           +  T++ L++GLCKEGK+ EA +IL+ M  +G +PD   Y  +++  C +G+ ++A    
Sbjct: 250 DAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLF 309

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
           + +   GI        L++  +N ++ G CK    + AF+++  MR + +   ++TY++L
Sbjct: 310 ESLADRGI-------KLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTL 362

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I   C+ G +  + ++  E+   G      T+  ++  L     + +A +L 
Sbjct: 363 IGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLF 414



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 188/373 (50%), Gaps = 13/373 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPL 102
           G   D   +S ++  L    + + A +    +  E   I+ D++   S+  G  R     
Sbjct: 176 GILPDVVVYSSLMDGLCRFGRLKEALEFFKEM--EGRGISADVYTYNSLIHGLSRAGLWK 233

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +     + M + G  P   ++  ++  L +E ++  A +    M   G +P + + N L+
Sbjct: 234 EVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLM 293

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC   G ++ A K+F  + +RG   + ++Y  LING C+  KI EA  LF+EM  K  
Sbjct: 294 NGLCL-VGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGL 352

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P+ VTY +LI  LCQS  V  A +LF EM++ G    + TY  L+DGLCK G   +A++
Sbjct: 353 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAID 412

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L Q +    H+PNI  +S LL+G+C+ GKL+EA +  D +   GL+PD   Y  +I+  C
Sbjct: 413 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC 472

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           + G   EA   L +M   G  P+ +T+       N ++Q L K +  + A Q+   MRNR
Sbjct: 473 NKGMLSEAVKLLWQMEEKGCLPDSITF-------NVIIQNLLKENEIHEAIQLLEEMRNR 525

Query: 402 SISVDSLTYSSLI 414
           + S D    S L+
Sbjct: 526 NFSPDEAVTSMLL 538



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 161/311 (51%), Gaps = 30/311 (9%)

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           RG  PD+ T  TL+ G+     I +A +LF EM  K       TY  LINGLC+++    
Sbjct: 71  RGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGL 130

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A++L E+M+    + +VFTY  ++D LCK G +++A+++   MI     P++V YS+L++
Sbjct: 131 AIKLHEKMKGN-CKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMD 189

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           GLC+ G+L+EA+E    M+ +G+  D   Y  +I      G ++E   FL+ MV  G +P
Sbjct: 190 GLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSP 249

Query: 365 NRLTWSL----------------------------HIRIHNTVVQGLCKTDP-NRAFQVY 395
           +  T+++                             I  +NT++ GLC       A +++
Sbjct: 250 DAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLF 309

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            S+ +R I ++  +Y+ LI  +CK   I ++ R+ +E+   G  P   T++ ++ AL   
Sbjct: 310 ESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQS 369

Query: 456 RKMRQAAELLL 466
            ++R A +L +
Sbjct: 370 GRVRTAQKLFV 380



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 11/218 (5%)

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           +G EP+  T ++L+ G+        A++L   M  K    +  TY  L+NGLCK  K   
Sbjct: 71  RGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGL 130

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+++ ++MK    K D   YG II   C  G   EA +   EM+  GI P+       + 
Sbjct: 131 AIKLHEKMK-GNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPD-------VV 182

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           ++++++ GLC+      A + +  M  R IS D  TY+SLI    + G   +    ++ +
Sbjct: 183 VYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLM 242

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           V  G  PD  T++ ++  L    K+ +A +  +LELM+
Sbjct: 243 VDRGFSPDAFTFTILIDGLCKEGKVGEAQQ--ILELMH 278


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 218/415 (52%), Gaps = 18/415 (4%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI----FLSICRGYGRVHRPLDAMRV 107
            ++ MI    SA +F  A  LL+R  + K  I   I     L+  R  G+V    +A++V
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLER-QRAKGSIPSVIAYNCILTCLRKMGKVD---EALKV 365

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           F++MK+    P   +Y  ++ +L    +L  AF     M++ G+ P V ++N+++  LCK
Sbjct: 366 FEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
            S  +D A  +F EM  + CTPD  T+ +LI+GL ++G++ +A +++++M    C    +
Sbjct: 425 -SQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSI 483

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            YTSLI         E+  +++++M ++   P++   ++ MD + K G   +   + + +
Sbjct: 484 VYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI 543

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
            ++R  P+  +YS L++GL K G   E  E+   MK QG   D   Y  +I  FC  GK 
Sbjct: 544 KARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
            +A   L+EM   G  P  +T+        +V+ GL K D  + A+ ++   +++ I ++
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYG-------SVIDGLAKIDRLDEAYMLFEEAKSKRIELN 656

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            + YSSLI  F K G I ++  I++EL+  G  P+  TW++++ AL    ++ +A
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEA 711



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 205/415 (49%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T ++M+ +L  + +   A  + + ++ + C   E  F S+  G G+V R  DA +V++KM
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            +  C      Y +++       + +   + Y+ M      P +  LN  +  + K +G 
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFK-AGE 532

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            +    +F E+  R   PD+ +Y  LI+GL + G   E  ELF  M+ + C      Y  
Sbjct: 533 PEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNI 592

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+   V +A +L EEM++KG EP V TY S++DGL K     +A  L +   SKR
Sbjct: 593 VIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR 652

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              N+V YS+L++G  K G++ EA  IL+ +  +GL P+   +  ++       +  EA 
Sbjct: 653 IELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEAL 712

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
                M     TPN++T+ +       ++ GLCK    N+AF  +  M+ + +   +++Y
Sbjct: 713 VCFQSMKELKCTPNQVTYGI-------LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISY 765

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I+   K G+I ++  + D    +G +PD   ++A++  L +  +   A  L 
Sbjct: 766 TTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLF 820



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 188/398 (47%), Gaps = 10/398 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF    +T   M+   V AN+ R   D++  + K K       + ++   +  V+     
Sbjct: 128 GFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMM 187

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+E G EPT   + T++    +E ++  A      M+   +   +   NV I +
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G +D A+K F E+   G  PD  TY ++I  LC+  ++ EA E+F+ +E     P
Sbjct: 248 FGK-VGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVP 306

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
               Y ++I G   +   +EA  L E  R+KG  P+V  Y+ ++  L K G   +A+++ 
Sbjct: 307 CTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVF 366

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   PN+ TY+ L++ LC+ GKL  A E+ D M+  GL P+      ++   C  
Sbjct: 367 EEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKS 425

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            K  EA    +EM     TP+ +T+        +++ GL K    + A++VY  M +   
Sbjct: 426 QKLDEACAMFEEMDYKVCTPDEITFC-------SLIDGLGKVGRVDDAYKVYEKMLDSDC 478

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
             +S+ Y+SLI  F   G      +I  +++   C PD
Sbjct: 479 RTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 226/513 (44%), Gaps = 44/513 (8%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           V+ M K+  +   +    LI A   VN + ++          G+      F+ +I     
Sbjct: 156 VQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAK 215

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSIC-RGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
             +   A  LLD +     D  + +  ++C   +G+V +   A + F +++  G +P   
Sbjct: 216 EGRVDSALSLLDEMKSSSLD-ADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEV 274

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL---------------- 165
           +Y +++ +L + N+L  A   + H+ +    PC  + N +I                   
Sbjct: 275 TYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQ 334

Query: 166 ------------------CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
                              +  G +D A K+F EM  +   P+  TY  LI+ LCR GK+
Sbjct: 335 RAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKL 393

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A EL   M+     P V T   +++ LC+S+ ++EA  +FEEM  K   P+  T+ SL
Sbjct: 394 DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSL 453

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGL K G    A ++ + M+    R N + Y++L+      G+ ++  +I   M  Q  
Sbjct: 454 IDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNC 513

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            PD  L    + C    G+ ++     +E+      P+  ++S  I IH  +  G     
Sbjct: 514 SPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYS--ILIHGLIKAGFA--- 568

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            N  ++++ SM+ +   +D+  Y+ +I  FCK G ++K+ ++++E+   G  P   T+ +
Sbjct: 569 -NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
           V+  L    ++ +A  +L  E  +K +E  V I
Sbjct: 628 VIDGLAKIDRLDEAY-MLFEEAKSKRIELNVVI 659



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 171/355 (48%), Gaps = 11/355 (3%)

Query: 100 RPLDAM-RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           R  DA+ ++  +M   G  P+  + I ++   V+ N+L+  +   + MR+   +P  ++ 
Sbjct: 112 RNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAY 171

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
             LI A    + + D    +F++M   G  P  + + TLI G  + G++  A  L  EM+
Sbjct: 172 TTLIGAFSAVNHS-DMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK 230

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           + +    +V Y   I+   +   V+ A + F E+ + G++P+  TY+S++  LCK     
Sbjct: 231 SSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLD 290

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A+E+ + +   R  P    Y+T++ G    GK  EA  +L+R + +G  P    Y  I+
Sbjct: 291 EAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCIL 350

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           +C   +GK  EA    +EM      PN  T+       N ++  LC+    + AF++  S
Sbjct: 351 TCLRKMGKVDEALKVFEEMKKDA-APNLSTY-------NILIDMLCRAGKLDTAFELRDS 402

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           M+   +  +  T + ++   CK   + ++  + +E+    C PDE T+ +++  L
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGL 457



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 146/285 (51%), Gaps = 1/285 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A  F  D  ++S++I  L+ A       +L   + ++ C +    +  +  G+ +  +  
Sbjct: 545 ARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVN 604

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A ++ ++MK  G EPT  +Y +V+  L + ++L  A+  +   +   I+  V   + LI
Sbjct: 605 KAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI 664

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K  G +D A+ I  E+  +G TP+ YT+ +L++ L +  +I EA   F+ M+   C
Sbjct: 665 DGFGK-VGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKC 723

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P  VTY  LINGLC+ +   +A   ++EM+ +G++P+  +Y++++ GL K G  ++A  
Sbjct: 724 TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGA 783

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           L     +    P+   Y+ ++ GL    +  +A  + +  + +GL
Sbjct: 784 LFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 154/349 (44%), Gaps = 12/349 (3%)

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
           +P P+  I VL  L + N+    FR+Y    E+   P   +  +L+ A C+N    DA  
Sbjct: 62  KPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRN---FDALD 118

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           +I  EM   G  P   T   ++ G  +  K+ E  ++ + M      P    YT+LI   
Sbjct: 119 QILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAF 178

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
                 +  + LF++M+  G EP V  +++L+ G  K G    A+ LL  M S     +I
Sbjct: 179 SAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADI 238

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           V Y+  ++   K GK+  A +    ++  GLKPD   Y  +I   C   +  EA    + 
Sbjct: 239 VLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEH 298

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           +      P   T++     +NT++ G       + A+ +    R +      + Y+ ++T
Sbjct: 299 LEKNRRVP--CTYA-----YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILT 351

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           C  K G + ++ ++ +E+  D   P+  T++ ++  L    K+  A EL
Sbjct: 352 CLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILIDMLCRAGKLDTAFEL 399



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 4/253 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           VNKA  + +    +   GF     T+  +I  L   ++   A  L +    ++ ++   I
Sbjct: 603 VNKAYQLLEEMKTK---GFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+  G+G+V R  +A  + +++ + G  P   ++ ++L  LV+  ++  A   ++ M+
Sbjct: 660 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMK 719

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E+   P   +  +LI  LCK     + AF  ++EM  +G  P + +Y T+I+GL + G I
Sbjct: 720 ELKCTPNQVTYGILINGLCKVR-KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNI 778

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  LF   +     P    Y ++I GL       +A  LFEE R +G+  +  T   L
Sbjct: 779 AEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVL 838

Query: 268 MDGLCKGGCSSQA 280
           +D L K  C  QA
Sbjct: 839 LDTLHKNDCLEQA 851



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 132/295 (44%), Gaps = 19/295 (6%)

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           E+P+    P+SY    L+   CR        ++  EM      P+V T   ++ G  ++ 
Sbjct: 93  ELPH---CPESYNSLLLVMARCR--NFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKAN 147

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
            + E   + + MR     P    Y++L+        S   + L Q M    + P +  ++
Sbjct: 148 KLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFT 207

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           TL+ G  KEG++  A+ +LD MK   L  D  LY   I  F  +GK   A  F  E+   
Sbjct: 208 TLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN 267

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM-RNRSISVDSLTYSSLITCFC 418
           G+ P+ +T++  I +       LCK +  + A +++  + +NR +   +  Y+++I  + 
Sbjct: 268 GLKPDEVTYTSMIGV-------LCKANRLDEAVEMFEHLEKNRRVPC-TYAYNTMIMGYG 319

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL-LLELMNK 472
             G   ++  +++     G +P    ++ ++T L   RKM +  E L + E M K
Sbjct: 320 SAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCL---RKMGKVDEALKVFEEMKK 371


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 213/419 (50%), Gaps = 16/419 (3%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL-SIC-RGYGRVHRPLDAMR 106
           D ++++++I+    + +   A  +LD  +      T D  L S+C RG     +   AM+
Sbjct: 138 DANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDAVLCSLCDRG-----KLKQAMQ 192

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           V D+  +  C P   +   ++    +E+ +  A + +  MR  G +P V + NVLIK  C
Sbjct: 193 VLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFC 252

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G +D A    +++P+ GC  D  ++  ++  LC  G+  +A +L   M  K C P+V
Sbjct: 253 K-EGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSV 311

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VT+  LIN LCQ   + +A+ + E M   G  PN  +++ L+ G C      +A+E L++
Sbjct: 312 VTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEI 371

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+S+   P+IVTY+ LL  LCK+GK+ +AV IL ++  +G  P    Y  +I     +GK
Sbjct: 372 MVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGK 431

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
            + A   L+EM   G+ P+ +T +       +VV GL +    + A + +  ++   I  
Sbjct: 432 AELAVELLEEMCYKGLKPDLITCT-------SVVGGLSREGKVHEAIKFFHYLKGFGIKP 484

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           ++  Y+S++   CK      +   + ++V +GC P E +++ ++  +       +A++L
Sbjct: 485 NAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKL 543



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 178/364 (48%), Gaps = 12/364 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +  R  + M   G  P   +   ++    +  + K A R    + E G      S NVLI
Sbjct: 87  EGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLI 146

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A CK SG ++ A ++   + +    P++ TY  ++  LC  GK+ +A ++        C
Sbjct: 147 NAYCK-SGEIEEALRV---LDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKC 202

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVT T LI+  C+   V +AM+LF EMR KG +P+V TY+ L+ G CK G   +A+ 
Sbjct: 203 YPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAII 262

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L+ + S   + ++++++ +L  LC  G+  +A+++L  M  +G  P    +  +I+  C
Sbjct: 263 FLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLC 322

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
             G   +A N L+ M   G TPN        R  N ++QG C +   +RA +    M +R
Sbjct: 323 QKGLLGKALNVLEMMPKHGHTPNS-------RSFNPLIQGFCNRKGIDRAIEHLEIMVSR 375

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D +TY+ L+T  CK G +  +  I+ +L   GC P   +++ V+  L    K   A
Sbjct: 376 GCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELA 435

Query: 462 AELL 465
            ELL
Sbjct: 436 VELL 439



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 187/377 (49%), Gaps = 12/377 (3%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++ R + ++ R  +A R+   ++E G      SY  ++    +  +++ A R   H    
Sbjct: 109 ALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTS-- 166

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            + P  A+ + ++ +LC + G +  A ++        C PD  T   LI+  C+   + +
Sbjct: 167 -VAPNAATYDAVLCSLC-DRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQ 224

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +LF EM  K C P VVTY  LI G C+   ++EA+   +++ S G + +V +++ ++ 
Sbjct: 225 AMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILR 284

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            LC GG    AM+LL  M+ K   P++VT++ L+N LC++G L +A+ +L+ M   G  P
Sbjct: 285 SLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTP 344

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
           ++  +  +I  FC+      A   L+ MV  G  P+ +T+       N ++  LCK    
Sbjct: 345 NSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTY-------NILLTALCKDGKV 397

Query: 390 RAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
               V LS + ++  S   ++Y+++I    K G    +  +++E+   G  PD  T ++V
Sbjct: 398 DDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSV 457

Query: 449 MTALWDRRKMRQAAELL 465
           +  L    K+ +A +  
Sbjct: 458 VGGLSREGKVHEAIKFF 474



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 171/347 (49%), Gaps = 12/347 (3%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-- 82
           E  V +A+ +F+    +   G + D  T++++I       +   A   L ++    C   
Sbjct: 219 ESGVGQAMKLFNEMRGK---GCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSD 275

Query: 83  -ITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
            I+ ++ L S+C G     R +DAM++   M   GC P+  ++  ++  L ++  L  A 
Sbjct: 276 VISHNMILRSLCSG----GRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKAL 331

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
                M + G  P   S N LI+  C   G +D A +    M +RGC PD  TY  L+  
Sbjct: 332 NVLEMMPKHGHTPNSRSFNPLIQGFCNRKG-IDRAIEHLEIMVSRGCYPDIVTYNILLTA 390

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC+ GK+ +A  +  ++ +K CSP++++Y ++I+GL +    E A+ L EEM  KG++P+
Sbjct: 391 LCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPD 450

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           + T +S++ GL + G   +A++    +     +PN   Y++++ GLCK  +   A++ L 
Sbjct: 451 LITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLV 510

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
            M   G KP    Y  +I      G  +EA+   +E+   G+    L
Sbjct: 511 DMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLVKKSL 557



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           L ++  +EE  R  E M +KG  P+V   ++L+   CK G +  A  ++ ++       +
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID 138

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
             +Y+ L+N  CK G+++EA+ +LD   +    P+A  Y  ++   CD GK ++A   LD
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLDHTSVA---PNAATYDAVLCSLCDRGKLKQAMQVLD 195

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
             +     P+ +T ++       ++   CK +   +A +++  MR +    D +TY+ LI
Sbjct: 196 RQLQSKCYPDVVTCTV-------LIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLI 248

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             FCK+G + ++   + +L   GC  D  + + ++ +L    +   A +LL   L   C 
Sbjct: 249 KGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCF 308

Query: 475 EAEV 478
            + V
Sbjct: 309 PSVV 312


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 183/352 (51%), Gaps = 12/352 (3%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P+   +  +L  +            Y+ M   GI     +LN+LI + C +   +  AF 
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFC-HLNRLGFAFS 66

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  ++   G  P + T+ TLI GLC  GKI EA +LF +M  +   P V+TY +LINGLC
Sbjct: 67  VLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLC 126

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + + + EA+ LF +M +KG+ PN FTYSSL+ GLC  G   +A+ L   MI ++  P+ +
Sbjct: 127 KDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQL 186

Query: 298 TYSTLLNGLCKEGKLQ---EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           T++TL++ LCKEG +Q   +A+ + + M  QGL PD   Y  +I   C +G+ ++A    
Sbjct: 187 TFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALF 246

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSL 413
            EMV+ G  P+ +T+ +       +   LCK        V L  +   ++  D   YS +
Sbjct: 247 HEMVVYGQIPDLVTYRI-------LFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIV 299

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +   C+ G++  +  +  +L   G  PD  T++ ++  L  +  + +A++L 
Sbjct: 300 MDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLF 351



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 162/316 (51%), Gaps = 4/316 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  H+  T +++I+     N+   A  +L  + K     +   F ++ RG     +  +A
Sbjct: 40  GIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEA 99

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++FDKM   G +P   +Y T++  L ++ QL  A   +  M   GI P   + + LI  
Sbjct: 100 LQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHG 159

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY---EAKELFKEMETKA 221
           LC   G    A ++F  M +R   PD  T+ TL++ LC+ G I    +A  LF+EM  + 
Sbjct: 160 LCI-LGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQG 218

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P  VTY +LI+GLC    + +A+ LF EM   G  P++ TY  L D LCK    ++AM
Sbjct: 219 LIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAM 278

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+++      P+I  YS +++G+C+ G+L+ A ++  ++  +GL PD   Y  +I+  
Sbjct: 279 VLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGL 338

Query: 342 CDIGKYQEAANFLDEM 357
           C  G   EA+    EM
Sbjct: 339 CQQGLLAEASKLFGEM 354



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 49/310 (15%)

Query: 6   MFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           + K   + ++A    LIR    E  + +AL +FD  T E   GF+ D  T+  +I+ L  
Sbjct: 71  ILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGE---GFQPDVLTYGTLINGLCK 127

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRG--------------YGRVHRPL------ 102
             Q   A  L   +  +        + S+  G              Y  +HR +      
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 187

Query: 103 ------------------DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
                              AM +F++M + G  P   +Y T++  L    +L+ A   + 
Sbjct: 188 FNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFH 247

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   G  P + +  +L   LCKN   +  A  + + +      PD + Y  +++G+CR 
Sbjct: 248 EMVVYGQIPDLVTYRILFDYLCKNH-RLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRA 306

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G++  A++LF ++ +K   P V TYT +INGLCQ   + EA +LF EM    +E    +Y
Sbjct: 307 GELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENDIE----SY 362

Query: 265 SSLMDGLCKG 274
           S+      KG
Sbjct: 363 STFSRNAFKG 372



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 8/180 (4%)

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+  R  P+IV +S LL  + +       + +  +M   G+  +      +I+ FC + +
Sbjct: 1   MLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNR 60

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISV 405
              A + L +++  G  P+  T++       T+++GLC +     A Q++  M       
Sbjct: 61  LGFAFSVLGDILKLGYQPSTATFT-------TLIRGLCVEGKIGEALQLFDKMTGEGFQP 113

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D LTY +LI   CK   + ++  +  +++  G  P+  T+S+++  L      ++A  L 
Sbjct: 114 DVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLF 173


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 176/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY+ + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 109 VLEHLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 167

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 168 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 227

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 228 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYG 287

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 288 LCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLD 347

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKG
Sbjct: 348 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPNXRTYTMIINEFCKKG 397

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG +P   T++ +M  
Sbjct: 398 DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/268 (36%), Positives = 155/268 (57%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 157 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 216

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K M +++  
Sbjct: 217 GLCKES-KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLL 275

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 276 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEH 335

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +    + V Y+ L++GLC+EG+  +A ++L  M   GLKP+   Y  II+ FC 
Sbjct: 336 RKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCK 395

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 396 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 423



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 204/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 11  FRHTLHSYCTMIHFLCTHQMLSEAKXLIQVVVSRK-------------GKG------SAS 51

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 52  AVFAAILE--TKGTQRSDIFVFSGLITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKV 109

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  ++ +   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 110 LEHLMKL-----KYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 164

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 165 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 224

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  RM  Q L PD   Y  +
Sbjct: 225 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTL 284

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D + AF+   
Sbjct: 285 IYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYT-------TLIDGCCKEGDLDTAFEHRK 337

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  P+  T++ ++     + 
Sbjct: 338 RMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKG 397

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 398 DVWKGSKLL 406



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 145/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 141 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 200

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 201 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 259

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I++ M ++   PD  TY TLI GLC+ G + +A  L  EM  K   P  +TYT+L
Sbjct: 260 DLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTL 319

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 320 IDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 379

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +PN  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 380 KPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 426


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 200/393 (50%), Gaps = 9/393 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A GF  D  ++  +I+ L    + R A  +L +++ +   I   ++ +I     +    +
Sbjct: 166 ALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVI 225

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  ++ +M      P   ++  ++       QL+ AF  +R M    I P   + N+L+
Sbjct: 226 DAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILV 285

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            ALCK  G +  A  +   M   G  P+  TY +L++G C + ++ +AK +   +     
Sbjct: 286 DALCK-EGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGA 344

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P   +Y ++ING C+ K V+EA+ LF +M+ KG+ P+  TY+SL+DGLCK G  S A E
Sbjct: 345 APNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWE 404

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L+  M       NI TY+ L++ LCK   + +A+ ++ ++K QG++PD   +  +I   C
Sbjct: 405 LVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLC 464

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNR 401
            +G+ + A +   +++  G + N  T+       N +V GLCK       +  LS M + 
Sbjct: 465 KVGRLKNAQDVFQDLLSKGYSVNAWTY-------NIMVNGLCKEGLFDEAEALLSKMDDN 517

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            I  D++TY +LI     K +  K+ +++ E++
Sbjct: 518 GIIPDAVTYETLIQALFHKDENEKAEKLLREMI 550



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 212/425 (49%), Gaps = 22/425 (5%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRV---------NKEKCDITE--DIFLSICRGYGRVHRP 101
           F  +I++L S  QF P+   +D V          K    I E   I  S+ +     H P
Sbjct: 27  FPFLITRLYSQFQFVPSNIDVDNVVSSFNHLLRTKPTSSIIEFNKILGSLVKSNNN-HYP 85

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A+ +  +++  G  P   ++  ++       ++  AF     + ++G +P   + N L
Sbjct: 86  -TAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTL 144

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IK LC N G +  A      +   G   D ++YGTLINGLC++G+   A ++ ++++ K 
Sbjct: 145 IKGLCLN-GKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKL 203

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
               VV Y ++I+ LC+ K V +A  L+ +M +K + P+V T+S+L+ G C  G   +A 
Sbjct: 204 VKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAF 263

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            L + M+ K   P+  T++ L++ LCKEG L+ A  +L  M  +G+ P+   Y  ++  +
Sbjct: 264 GLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGY 323

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
           C + +  +A + L+ +   G  PN  ++        T++ G CK    + A  ++  M+ 
Sbjct: 324 CLVNQVNKAKHVLNTISQMGAAPNAHSYC-------TMINGFCKIKMVDEALSLFNDMQF 376

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + I+ D +TY+SLI   CK G I  +  +VDE+  +G   +  T++ ++ AL     + Q
Sbjct: 377 KGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQ 436

Query: 461 AAELL 465
           A  L+
Sbjct: 437 AIALV 441



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 204/422 (48%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  TF+ +I  L    + + A    D V      + +  + ++  G  ++     A
Sbjct: 133 GYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTA 192

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  K+     +     Y T++  L +   +  A+  Y  M    I P V + + LI  
Sbjct: 193 LQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYG 252

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G ++ AF +FREM  +   PD YT+  L++ LC+ G +  AK +   M  +   P
Sbjct: 253 FCI-VGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMP 311

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY+SL++G C    V +A  +   +   G  PN  +Y ++++G CK     +A+ L 
Sbjct: 312 NVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLF 371

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  K   P+ VTY++L++GLCK G++  A E++D M   G   +   Y  +I   C  
Sbjct: 372 NDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKN 431

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSI 403
               +A   + ++   GI P+  T+       N ++ GLCK    +  Q V+  + ++  
Sbjct: 432 HHVDQAIALVKKIKDQGIQPDMYTF-------NILIYGLCKVGRLKNAQDVFQDLLSKGY 484

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           SV++ TY+ ++   CK+G   ++  ++ ++  +G +PD  T+  ++ AL+ + +  +A +
Sbjct: 485 SVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEK 544

Query: 464 LL 465
           LL
Sbjct: 545 LL 546



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 128/239 (53%), Gaps = 1/239 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S ++      NQ   A+ +L+ +++         + ++  G+ ++    +A+ +F+ M
Sbjct: 315 TYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDM 374

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   +Y +++  L +  ++  A+     M + G    + + N LI ALCKN   
Sbjct: 375 QFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNH-H 433

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  + +++ ++G  PD YT+  LI GLC++G++  A+++F+++ +K  S    TY  
Sbjct: 434 VDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNI 493

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++NGLC+    +EA  L  +M   G+ P+  TY +L+  L     + +A +LL+ MI++
Sbjct: 494 MVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIAR 552



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 217 METKACSPTVVTYTSLINGLCQSKS--VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           + TK  S +++ +  ++  L +S +     A+ L   +   G+ P++FT++ L++  C  
Sbjct: 58  LRTKPTS-SIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHM 116

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
              + A  ++  ++   + P+ +T++TL+ GLC  GK++EA+   D +   G   D   Y
Sbjct: 117 AEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSY 176

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQ 393
           G +I+  C IG+ + A   L ++        +L   +++ ++NT++  LCK      A++
Sbjct: 177 GTLINGLCKIGETRTALQMLRKI------DGKLV-KINVVMYNTIIDSLCKHKLVIDAYE 229

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +Y  M  + IS D +T+S+LI  FC  G + ++  +  E+VL    PD  T++ ++ AL 
Sbjct: 230 LYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALC 289

Query: 454 DRRKMRQAAELLLL 467
               ++ A  +L++
Sbjct: 290 KEGNLKGAKNMLVV 303



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 88/168 (52%), Gaps = 1/168 (0%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           S+  G  +  R   A  + D+M + G      +Y  ++  L + + +  A    + +++ 
Sbjct: 388 SLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQ 447

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           GIQP + + N+LI  LCK  G +  A  +F+++ ++G + +++TY  ++NGLC+ G   E
Sbjct: 448 GIQPDMYTFNILIYGLCK-VGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDE 506

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           A+ L  +M+     P  VTY +LI  L      E+A +L  EM ++ V
Sbjct: 507 AEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDV 554


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/430 (29%), Positives = 207/430 (48%), Gaps = 37/430 (8%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRV--------------------NKEKCDITE 85
           FRH   ++  MI  L +   F  A+ LL  V                      ++ DI  
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMFSEAKSLLQVVVSRKGKGSASAVFAAILETKGTQRSDIY- 73

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +F  +   Y       DA+  +   +E        +   VL  L++    KL + FY  
Sbjct: 74  -VFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEE 132

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           + E G    +   N+L+   CK+ G +  A  +F  +   G  P + +Y TL+NG  RLG
Sbjct: 133 ILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLG 191

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + E   L   M      P V TY+ LINGL +   +++A  LF+EM  KG+ PN  T++
Sbjct: 192 VLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFT 251

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG CK G    AME+ + M+S+   P+++TY+TL+ GLCK+G L++A +++D M  +
Sbjct: 252 TLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRK 311

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GLKPD   Y  +I   C  G    A      M+   I  + +       ++  ++ GLC+
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDV-------VYTALISGLCQ 364

Query: 386 ----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
                D  +  +  LS+    ++ D+ TY+ +I  FCKKGD+ K ++++ E+  DG +P 
Sbjct: 365 EGRSVDAEKMLREMLSV---GLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPS 421

Query: 442 EGTWSAVMTA 451
             T++ +M  
Sbjct: 422 VVTYNVLMNG 431


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 217/450 (48%), Gaps = 44/450 (9%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  +++ +I+ L    +   A DLL  +    C+     +  +  G  +  R  +AMR+ 
Sbjct: 9   DIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLL 68

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +MK  G E     Y T+++    +  L      +  M E GI P V   + LI   CK 
Sbjct: 69  GEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKK 128

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G    A  +   M  RG  PD YTY  +I GLC+ G+  +A +LF  M  K   P+ VT
Sbjct: 129 -GLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  LINGLC+   + +A ++FE M  KG    V +Y++L+ GLC  G   +AM+L   ++
Sbjct: 188 YNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLL 247

Query: 289 SKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
              +   P+++T++T++ GLCKEG+L +AVEI D M       + G +G + +C   IG+
Sbjct: 248 EDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTM------IERGSFGNLFTCHILIGE 301

Query: 347 YQEAANFLDEMVLG------GITPNRLTWSLHI----RIH-------------------- 376
           Y ++      M L       G+ P+  T+S+ I    ++H                    
Sbjct: 302 YIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPT 361

Query: 377 ----NTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
               NT++  LCK +   +A +++  M+  +   D+++++ +I    K GDIH +  +++
Sbjct: 362 LFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLN 421

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           ++   G  PD  T+S+ +  L    +M +A
Sbjct: 422 DMQQMGLTPDAYTYSSFINRLSKLGQMEEA 451



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 156/279 (55%), Gaps = 10/279 (3%)

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD  +Y T+INGLC+  ++ +A +L  EME  +C P   TY  L++GLC+   VEEAMRL
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             EM+ KG+E +V  YS+L+ G C  GC  +   L   M+ K   PN+V YS L+NG CK
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           +G  +EA  +L  M  +G++PD   Y  +I   C  G+ ++A +  D M   G  P+ +T
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187

Query: 369 WSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       N ++ GLCK      AF+++ +M  +   ++ ++Y++LI   C  G + ++ 
Sbjct: 188 Y-------NVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAM 240

Query: 428 RIVDELVLDGCL--PDEGTWSAVMTALWDRRKMRQAAEL 464
           ++   L+ DG    PD  T++ V+  L    ++ +A E+
Sbjct: 241 KLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEI 279



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 176/345 (51%), Gaps = 11/345 (3%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           MK     P   SY T++  L +E +L+ A      M     +P   +  +L+  LCK  G
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCK-EG 59

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++ A ++  EM  +G   D   Y TLI+G C  G +   K LF EM  K  SP VV Y+
Sbjct: 60  RVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYS 119

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LING C+     EA  +   M  +G++P+V+TY+ ++ GLCK G + +A++L  +M  K
Sbjct: 120 CLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P+ VTY+ L+NGLCKEG + +A +I + M  +G + +   Y  +I   C+ GK  EA
Sbjct: 180 GEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEA 239

Query: 351 ANFLDEMVLGG--ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
                 ++  G  + P+ +T+       NTV+QGLCK    ++A ++Y +M  R    + 
Sbjct: 240 MKLFSSLLEDGNYVEPDVITF-------NTVIQGLCKEGRLDKAVEIYDTMIERGSFGNL 292

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            T   LI  + K G I K+  +   +   G +P   T+S ++   
Sbjct: 293 FTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGF 337



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 196/423 (46%), Gaps = 9/423 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D   +S +IS   S       + L D + ++       ++  +  G+ +     +A
Sbjct: 75  GLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREA 134

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             V   M E G +P   +Y  ++  L ++ + + A   +  M E G +P   + NVLI  
Sbjct: 135 TAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLING 194

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKAC 222
           LCK  G +  AFKIF  M  +G   +  +Y TLI GLC  GK+ EA +LF  +  +    
Sbjct: 195 LCK-EGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYV 253

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V+T+ ++I GLC+   +++A+ +++ M  +G   N+FT   L+    K G   +AME
Sbjct: 254 EPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAME 313

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + +      P+  TYS +++G CK   L  A  +  RMK+ GL P    Y  +++  C
Sbjct: 314 LWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLC 373

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
                ++A     EM      P+  T S +I I  T+  G    D + A ++   M+   
Sbjct: 374 KESSLEQARRLFQEMKESNCEPD--TISFNIMIDGTLKAG----DIHSAKELLNDMQQMG 427

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           ++ D+ TYSS I    K G + ++    D ++  G  PD   + +++       ++ +  
Sbjct: 428 LTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVI 487

Query: 463 ELL 465
            LL
Sbjct: 488 NLL 490



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 174/378 (46%), Gaps = 43/378 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ MI  L    + R A DL D + ++  + +   +  +  G  +     DA
Sbjct: 145 GIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDA 204

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG--IQPCVASLNVLI 162
            ++F+ M E G      SY T++  L    +L  A + +  + E G  ++P V + N +I
Sbjct: 205 FKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVI 264

Query: 163 KALCKN----------------------------------SGTMDAAFKIFREMPNRGCT 188
           + LCK                                   SG +D A ++++ +   G  
Sbjct: 265 QGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLV 324

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P S TY  +I+G C++  +  AK LF  M+    SPT+  Y +L+  LC+  S+E+A RL
Sbjct: 325 PSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRL 384

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F+EM+    EP+  +++ ++DG  K G    A ELL  M      P+  TYS+ +N L K
Sbjct: 385 FQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSK 444

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G+++EA    D M   G+ PD  +Y  +I  F    + +E  N L +M   G+      
Sbjct: 445 LGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVI----- 499

Query: 369 WSLHIRIHNTVVQGLCKT 386
             L + I N+++  LC +
Sbjct: 500 --LDLEITNSILTFLCNS 515



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 136/274 (49%), Gaps = 8/274 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSAT--AEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           IT   V+Q +  E  ++KA+ I+D+      + N F     T  ++I + + +     A 
Sbjct: 258 ITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLF-----TCHILIGEYIKSGIIDKAM 312

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           +L  RV+K     +   +  +  G+ ++H    A  +F +MK  G  PT   Y T++A L
Sbjct: 313 ELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASL 372

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
            +E+ L+ A R ++ M+E   +P   S N++I    K +G + +A ++  +M   G TPD
Sbjct: 373 CKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLK-AGDIHSAKELLNDMQQMGLTPD 431

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           +YTY + IN L +LG++ EAK  F  M     +P    Y SLI G   +  +EE + L  
Sbjct: 432 AYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLR 491

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           +M   GV  ++   +S++  LC        MELL
Sbjct: 492 QMADMGVILDLEITNSILTFLCNSAEHLHVMELL 525


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 175/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   ++ A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 292 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 352 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPDTGTYTMIINEFCKKG 401

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG  P   T++ +M  
Sbjct: 402 DVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/268 (37%), Positives = 159/268 (59%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++  
Sbjct: 221 GLCKES-KMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+ FTY++L+DG CK G    A E 
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPD G Y  II+ FC 
Sbjct: 340 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGSKLLKEMHRDGHAPSVVTYNV 427



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 204/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L++ V   K             G G       A 
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIEVVVSRK-------------GKG------SAS 55

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   +   +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 56  AVFAAVLE--TKGNQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKV 113

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 114 LEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 229 DGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P++ T++       T++ G CK  D + AF+   
Sbjct: 289 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYT-------TLIDGCCKEGDLDTAFEHRK 341

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD GT++ ++     + 
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKG 401

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 402 DVWKGSKLL 410



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 145/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TLI GLC+ G + +A +L  EM  K   P   TYT+L
Sbjct: 264 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M   G  P    Y  +++
Sbjct: 384 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMN 430


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 215/424 (50%), Gaps = 16/424 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRP-AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           G+  D+STF++++  L ++ + R     LLD +             +I            
Sbjct: 5   GYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTT 64

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM +FDKM E G      +Y  ++  L +   L  A      M+  G+ P     NV+I 
Sbjct: 65  AMALFDKMAELGAV-NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIG 123

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC+ +G +  A  ++R+M N    PD  TY  L++GL + G++ +A ++ +EM +    
Sbjct: 124 GLCR-AGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHV 181

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P   T T ++  LC    V++A  L EEM  +G+  N  TYS+L+DGLCK     +A+ L
Sbjct: 182 PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 241

Query: 284 LQMMISKR-HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   +++R   P+IVTYST+++GLCK G+L++AV+I + M      P A  Y  +I  +C
Sbjct: 242 LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYC 298

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G   EA   L +MV     P+ +T++       T++   CK    + A++++  M   
Sbjct: 299 RAGDMDEAIRLLGKMVDDNCAPDVITYT-------TLMSAFCKMGRLDDAYELFQQMVAN 351

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +S D +T++SL+   C +G +  +  +++E+   GC P   T++ V+       ++R+A
Sbjct: 352 KLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKA 411

Query: 462 AELL 465
            EL+
Sbjct: 412 EELV 415



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 202/395 (51%), Gaps = 17/395 (4%)

Query: 47  RH--DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           RH  DN+T ++++  L   ++   A +L++ +           + ++  G  +  R  +A
Sbjct: 179 RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEA 238

Query: 105 MRVF-DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           + +   ++   G  P   +Y TV+  L +  +L+ A   +    E+   P   + N LI 
Sbjct: 239 VALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFE---EMSCAPTAITYNSLIG 295

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+ +G MD A ++  +M +  C PD  TY TL++  C++G++ +A ELF++M     S
Sbjct: 296 GYCR-AGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLS 354

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVT+TSL++GLC    +E+A+ L EE+  +G  P ++TY+ ++DG CK     +A EL
Sbjct: 355 PDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEEL 414

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG--LKPDAGLYGKIISCF 341
           +    S+   PN VTY+ L+ G C+ G+  +A++ LD++  +G        +Y  I+   
Sbjct: 415 VADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDAL 474

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C  G+  +A  F +EM+  G  P   T++       TVV  LCK   P +A ++   M  
Sbjct: 475 CRDGRTDDAVQFYEEMIQRGYVPAAATFA-------TVVFALCKAHQPQQAHELLEEMIK 527

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
              +    T  ++++ +C+ G I K+  +  EL L
Sbjct: 528 YGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 562



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 220/450 (48%), Gaps = 42/450 (9%)

Query: 54  SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS---ICRGYGRVHRPLDAMRVFDK 110
           +++I  L  A + R A  +  ++N    D     FL+   +  G  +  R  DA++V  +
Sbjct: 119 NVVIGGLCRAGRLRHALGVYRQMN----DAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQE 174

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M      P   +   V+  L   +++  A      M   G+     + + L+  LCK   
Sbjct: 175 MVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCER 234

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             +A   +  E+  RG TPD  TY T+I+GLC+ G++ +A ++F+EM   +C+PT +TY 
Sbjct: 235 LDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYN 291

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           SLI G C++  ++EA+RL  +M      P+V TY++LM   CK G    A EL Q M++ 
Sbjct: 292 SLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVAN 351

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
           +  P++VT+++L++GLC EG++++A+E+L+ +  +G  P    Y  ++  +C   + ++A
Sbjct: 352 KLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKA 411

Query: 351 ANFLDEMVLGGITPNRLTWSL------------------------------HIRIHNTVV 380
              + +    G  PN +T+++                               + ++  ++
Sbjct: 412 EELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIIL 471

Query: 381 QGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LC+    + A Q Y  M  R     + T+++++   CK     ++  +++E++  G  
Sbjct: 472 DALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHT 531

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           P  GT  AV++A + R  M Q A+ L  EL
Sbjct: 532 PGPGTCDAVVSA-YCRAGMIQKADELASEL 560



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 186/365 (50%), Gaps = 16/365 (4%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLK-LAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           M + G      ++  VL  L    +L+ L       +R+ G+ P    LN ++  LC   
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
            T   A  +F +M   G   +  TY  LI+ LC+   + EA  L  +M+++  +P  + +
Sbjct: 61  DTT-TAMALFDKMAELGAV-NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLH 118

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
             +I GLC++  +  A+ ++ +M +    P+  TY+ L+ GL K G    A+++LQ M+S
Sbjct: 119 NVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVS 177

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
            RH P+  T + ++  LC   ++ +A E+++ M  +G+  +A  Y  ++   C   +  E
Sbjct: 178 ARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDE 237

Query: 350 A-ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDS 407
           A A  L E+   G TP+ +T+S       TV+ GLCK    R A  ++  M   S +  +
Sbjct: 238 AVALLLGEVTRRGFTPDIVTYS-------TVIDGLCKAGRLRDAVDIFEEM---SCAPTA 287

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TY+SLI  +C+ GD+ ++ R++ ++V D C PD  T++ +M+A     ++  A EL   
Sbjct: 288 ITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQ 347

Query: 468 ELMNK 472
            + NK
Sbjct: 348 MVANK 352



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRGYGRVHR 100
           + GF  +  T++++++    A +   A   LD++N E   C  +  ++  I     R  R
Sbjct: 420 SRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGR 479

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             DA++ +++M + G  P   ++ TV+  L + +Q + A      M + G  P   + + 
Sbjct: 480 TDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDA 539

Query: 161 LIKALCKNSGTMDAAFKIFREM 182
           ++ A C+ +G +  A ++  E+
Sbjct: 540 VVSAYCR-AGMIQKADELASEL 560


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 216/483 (44%), Gaps = 76/483 (15%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSIC---RGYGRVH 99
           F+ D   ++ MIS L  A+ F  A D L R+    C    +T  I L  C   R  GR  
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCK 354

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R L  M     + E GC P+ + + +++           A++  + M + G QP     N
Sbjct: 355 RILSMM-----ITE-GCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYN 408

Query: 160 VLIKALCKN----------------------------------------SGTMDAAFKIF 179
           +LI  +C N                                        +G  + A+ I 
Sbjct: 409 ILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSII 468

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           REM ++G  PD+ TY  +I  LC   K+  A  LF+EM++    P V TYT LI+  C+ 
Sbjct: 469 REMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKV 528

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A + F+EM   G  PNV TY++L+    K    S A EL +MM+S+   PN+VTY
Sbjct: 529 GLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL----------------YGKIISCFCD 343
           + L++G CK G++++A +I  RM+     PD  +                YG ++   C 
Sbjct: 589 TALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCK 648

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             K +EA + LD M + G  PN      HI +++ ++ G CK    + A  V+  M  R 
Sbjct: 649 AHKVKEARDLLDVMSVEGCEPN------HI-VYDALIDGFCKVGKLDEAQMVFTKMSERG 701

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              +  TYSSLI    K   +  + +++  ++ + C P+   ++ ++  L    K  +A 
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761

Query: 463 ELL 465
            L+
Sbjct: 762 RLM 764



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 217/481 (45%), Gaps = 74/481 (15%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHR 100
           + GF  D ST+S +I  L +A++   A  L + +      +  D+F    +   + +V  
Sbjct: 473 SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH--VVPDVFTYTILIDSFCKVGL 530

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A + FD+M   GC P   +Y  ++   ++  ++  A   +  M   G  P V +   
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDS----------------YTYGTLINGLCRL 204
           LI   CK SG ++ A +I+  M      PD                 +TYG L++GLC+ 
Sbjct: 591 LIDGHCK-SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA 649

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            K+ EA++L   M  + C P  + Y +LI+G C+   ++EA  +F +M  +G  PNV+TY
Sbjct: 650 HKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTY 709

Query: 265 SSL-----------------------------------MDGLCKGGCSSQAMELLQMMIS 289
           SSL                                   +DGLCK G + +A  L+ MM  
Sbjct: 710 SSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEE 769

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   PN+VTY+ +++G  K GK+ + +E++ +M  +G  P+   Y  +I+  C  G   +
Sbjct: 770 KGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDD 829

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN---RSISVD 406
           A   LDEM        +  W  H+  +  V++G      NR F + L + +    +++V 
Sbjct: 830 AHQLLDEM-------KQTYWPKHMAGYRKVIEGF-----NREFIISLGLLDEIAENVAVP 877

Query: 407 SL-TYSSLITCFCKKGDIHKSARIVDEL--VLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            +  Y  LI  FCK G +  +  +  E+         D+  +S+++ +L    K+ +A E
Sbjct: 878 IIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFE 937

Query: 464 L 464
           L
Sbjct: 938 L 938



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 200/437 (45%), Gaps = 18/437 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+ H    +  ++  L      R  E  L  +  E  +I   +   + R   R      A
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVA 216

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +    ++K+ G +P+  +Y  ++ + +E ++L  A+  +R M + G      +L   +  
Sbjct: 217 LEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHL 276

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK     +A   I +E        D+  Y  +I+GLC      EA +    M + +C P
Sbjct: 277 LCKAGRWREALALIEKEEFKL----DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIP 332

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY  L+ G  + + +    R+   M ++G  P+   ++SL+   C+ G  S A +LL
Sbjct: 333 NVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQ--EAVEILDRMKLQGLKPDAGL----YGKII 338
           + M     +P  V Y+ L+ G+C   KL   + +E+ ++   + L     L       + 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
            C C  GK+++A + + EM+  G  P+  T+S        V+  LC     + AF ++  
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSKGFIPDTSTYS-------KVIGLLCNASKVDNAFLLFEE 505

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M++  +  D  TY+ LI  FCK G + ++ +  DE+V DGC P+  T++A++ A    RK
Sbjct: 506 MKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARK 565

Query: 458 MRQAAELLLLELMNKCV 474
           M  A EL  + L   C+
Sbjct: 566 MSSANELFEMMLSEGCI 582



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVF 108
           T++ MI     A +     +L+ ++  + C    +T  + ++ C   G +    DA ++ 
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLD---DAHQLL 834

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+MK+         Y  V+     E  + L       + E    P + +  +LI + CK 
Sbjct: 835 DEMKQTYWPKHMAGYRKVIEGFNREFIISLGL--LDEIAENVAVPIIPAYRILIDSFCK- 891

Query: 169 SGTMDAAFKIFREMPNRGCT----PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           +G ++ A ++ +EM +  CT     D   Y +LI  L    K+ +A EL+ +M  +   P
Sbjct: 892 AGRLELALELHKEMSS--CTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIP 949

Query: 225 TVVTYTSLINGLCQSKSVEEAMRL 248
            +  +  L+ GL +    EEA++L
Sbjct: 950 ELSIFFYLVKGLIRINRWEEALQL 973


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 193/391 (49%), Gaps = 30/391 (7%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A     K+ + G +P   ++ T++  L  E ++  A   +  M   G QP V +   LI 
Sbjct: 99  AFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLIN 158

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK+    + AF IF EM  +G +P+  TY +LI+GLC+L +      L  EM      
Sbjct: 159 GLCKDRQVTE-AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIM 217

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V T  ++++ LC+   V EA  + + M  +GVEPNV TY++LMDG C       A+++
Sbjct: 218 PDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKV 277

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M+ K    N+++Y+TL+NG CK   + +A+ + + M  Q L P+   Y  +I   C 
Sbjct: 278 FDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCH 337

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT----------------------------WSLHIRI 375
           +G+ Q+A +   EMV  G  P+ +T                            W   I+I
Sbjct: 338 VGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQI 397

Query: 376 HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           + T++ G+C+  +   A  ++ ++ ++ +  +  TY+ +I   CK+G + +++++  E+ 
Sbjct: 398 YTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMN 457

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +GC P++ T++ +        +  +  ELL
Sbjct: 458 KNGCSPNDCTYNLITRGFLRNNEALRTIELL 488



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 201/410 (49%), Gaps = 7/410 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ +I  L    +   A  L D++  E        + ++  G  +  +  +A
Sbjct: 110 GHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEA 169

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F +M   G  P   +Y +++  L +  + K        M +  I P V +LN ++ A
Sbjct: 170 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 229

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK  G +  A  +   M +RG  P+  TY  L++G C   ++  A ++F  M  K C  
Sbjct: 230 LCK-EGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVA 288

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V++Y +LING C+ +SV++AM LFEEM  + + PN  TY++L+ GLC  G    A+ L 
Sbjct: 289 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLF 348

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+++   P++VTY TL + LCK   L +A+ +L  ++     PD  +Y  I+   C  
Sbjct: 349 HEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRA 408

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
           G+ ++A +    +   G+ PN   W+ +I IH    QGL       A +++  M     S
Sbjct: 409 GELEDARDLFSNLSSKGLQPN--VWTYNIMIHGLCKQGLLA----EASKLFSEMNKNGCS 462

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            +  TY+ +   F +  +  ++  +++E++  G   D  T + ++  L D
Sbjct: 463 PNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 512



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 15/405 (3%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIR    E  + +AL +FD    E   GF+ +  T+  +I+ L    Q   A ++   + 
Sbjct: 121 LIRGLCVEGKIGEALHLFDKMIGE---GFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMI 177

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
            +        + S+  G  ++        + ++M +    P   +  TV+  L +E  + 
Sbjct: 178 TKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVA 237

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A      M   G++P V + N L+   C  +  +D A K+F  M ++ C  +  +Y TL
Sbjct: 238 EAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN-EVDVAVKVFDTMVHKDCVANVISYNTL 296

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING C++  + +A  LF+EM  +  +P  VTY +LI+GLC    +++A+ LF EM ++G 
Sbjct: 297 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 356

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P++ TY +L D LCK     +AM LL+ +      P+I  Y+T+L+G+C+ G+L++A +
Sbjct: 357 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 416

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +   +  +GL+P+   Y  +I   C  G   EA+    EM   G +PN  T+       N
Sbjct: 417 LFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTY-------N 469

Query: 378 TVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + +G  + +   R  ++   M  R  SVD  T + L+      G
Sbjct: 470 LITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 514



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 181/386 (46%), Gaps = 31/386 (8%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F++M      P+   +  +L  + +             M   GI P V +LN+LI
Sbjct: 564 DALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILI 623

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR------------------- 203
            + C +   +  AF +  ++   G  PD  TYGTL+NGLC+                   
Sbjct: 624 NSFC-HLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHA 682

Query: 204 LGKIYEAKE---LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           L  + E K    L  EM      P VV ++++++ LC+   +  A  + + M  +GVEP+
Sbjct: 683 LCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPD 742

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           V TY++LMDG C      +A+++   M+ K   PN+ +Y+ L+NG C+  ++ +A+ +L+
Sbjct: 743 VVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLE 802

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           +M LQGL  D   Y  +I   C +G+ Q A     EMV  G  P+ +T+ +       ++
Sbjct: 803 QMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRI-------LL 855

Query: 381 QGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LCK        V L ++   ++  D L Y+  I   C+ G++  +  +   L   G  
Sbjct: 856 DYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQ 915

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           PD  T++ ++  L  R  + +A +L 
Sbjct: 916 PDVRTYNIMIHGLCKRGLLDEANKLF 941



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 169/361 (46%), Gaps = 30/361 (8%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N L  A   +  M      P     N L+ ++ K +        + R+M + G  PD YT
Sbjct: 24  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAK-TKHHSTLLSLSRQMDSFGIPPDVYT 82

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
              +IN LC L ++  A     ++      P   T+T+LI GLC    + EA+ LF++M 
Sbjct: 83  LAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMI 142

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            +G +PNV TY +L++GLCK    ++A  +   MI+K   PNIVTY++L++GLCK  + +
Sbjct: 143 GEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK 202

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
               +++ M    + PD      ++   C  G   EA + +D M+  G+ PN +T++  +
Sbjct: 203 HVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALM 262

Query: 374 RIH----------------------------NTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
             H                            NT++ G CK    ++A  ++  M  + ++
Sbjct: 263 DGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT 322

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            +++TY++LI   C  G +  +  +  E+V  G +PD  T+  +   L   R + +A  L
Sbjct: 323 PNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMAL 382

Query: 465 L 465
           L
Sbjct: 383 L 383



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 198/470 (42%), Gaps = 68/470 (14%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G + +  T+++MI  L        A  L   +NK  C   +  +  I RG+ R +  L
Sbjct: 423 SKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEAL 482

Query: 103 DAMRVFDKM----------------------------KEFGCEPTPKS------------ 122
             + + ++M                            K+  C+P+  S            
Sbjct: 483 RTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPP 542

Query: 123 ------YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
                 + ++ +     N L  A   +  M  +   P       L+ ++ K         
Sbjct: 543 LFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKH-YSTVL 601

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
            +  +M + G  PD YT   LIN  C L ++  A  +  ++      P VVTY +L+NGL
Sbjct: 602 SLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGL 661

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+             M +KG+ P++FTY+SL+  LC          LL  M++ +  PN+
Sbjct: 662 CK-------------MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNV 708

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           V +ST+++ LCKEG +  A +++D M  +G++PD   Y  ++   C   +  EA    D 
Sbjct: 709 VVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDT 768

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           MV  G  PN       +R +N ++ G C+    ++A  +   M  + +  D++TY++LI 
Sbjct: 769 MVHKGCVPN-------VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIH 821

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             C  G +  +  +  E+V  G +PD  T+  ++  L     + +A  LL
Sbjct: 822 GLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLL 871



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 1/240 (0%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P    + TV+  L +E  + +A      M + G++P V +   L+   C  S  MD A K
Sbjct: 706 PNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRS-EMDEAVK 764

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +F  M ++GC P+  +Y  LING C++ ++ +A  L ++M  +      VTY +LI+GLC
Sbjct: 765 VFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLC 824

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
               ++ A+ LF EM + G  P++ TY  L+D LCK    ++AM LL+ +       +I+
Sbjct: 825 HVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADIL 884

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            Y+  ++G+C+ G+L+ A ++   +  +GL+PD   Y  +I   C  G   EA     +M
Sbjct: 885 VYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKM 944



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 143/285 (50%), Gaps = 8/285 (2%)

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           S ++ T  +       + EA   F  M  K   P+ V +  L+  + ++K     + L  
Sbjct: 10  SSSHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSR 69

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M S G+ P+V+T + +++ LC       A   L  ++   H+P+  T++TL+ GLC EG
Sbjct: 70  QMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 129

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           K+ EA+ + D+M  +G +P+   YG +I+  C   +  EA N   EM+  GI+PN +T+ 
Sbjct: 130 KIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTY- 188

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N+++ GLCK    +     ++ M +  I  D  T ++++   CK+G + ++  +
Sbjct: 189 ------NSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDV 242

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           VD ++  G  P+  T++A+M     R ++  A ++    +   CV
Sbjct: 243 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV 287



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 1/251 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A++VFD M    C     SY T++    +   +  A   +  M    + P   + N LI 
Sbjct: 274 AVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIH 333

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC + G +  A  +F EM  RG  PD  TY TL + LC+   + +A  L K +E     
Sbjct: 334 GLC-HVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWD 392

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P +  YT++++G+C++  +E+A  LF  + SKG++PNV+TY+ ++ GLCK G  ++A +L
Sbjct: 393 PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 452

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M      PN  TY+ +  G  +  +    +E+L+ M  +G   D      ++    D
Sbjct: 453 FSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 512

Query: 344 IGKYQEAANFL 354
            G  Q     L
Sbjct: 513 DGLDQSVKQIL 523



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 188/470 (40%), Gaps = 68/470 (14%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   D  T+  +   L        A  LL  +     D    I+ +I  G  R     
Sbjct: 353 ARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELE 412

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +F  +   G +P   +Y  ++  L ++  L  A + +  M + G  P   + N++ 
Sbjct: 413 DARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLIT 472

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL--------- 213
           +   +N+  +    ++  EM  RG + D  T   L+  L   G     K++         
Sbjct: 473 RGFLRNNEAL-RTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSR 531

Query: 214 -------------------------------------FKEMETKACSPTVVTYTSLINGL 236
                                                F  M      P+ V +T L+  +
Sbjct: 532 PSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSI 591

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
            + K     + L  +M S G+ P+V+T + L++  C       A  +L  ++    +P++
Sbjct: 592 AKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDV 651

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           VTY TL+NGLCK             M  +G+ PD   Y  +I   C++ +++     L+E
Sbjct: 652 VTYGTLMNGLCK-------------MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNE 698

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           MV   I PN + +S       TVV  LCK      A  V   M  R +  D +TY++L+ 
Sbjct: 699 MVNSKIMPNVVVFS-------TVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMD 751

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             C + ++ ++ ++ D +V  GC+P+  +++ ++      ++M +A  LL
Sbjct: 752 GHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLL 801



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/497 (22%), Positives = 207/497 (41%), Gaps = 73/497 (14%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           + V+KA+ +F+  + +       +  T++ +I  L    + + A  L   +   +  I +
Sbjct: 304 QSVDKAMYLFEEMSRQ---ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEM-VARGQIPD 359

Query: 86  DIFLSICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            +       Y   +R LD AM +   ++    +P  + Y T+L  +    +L+ A   + 
Sbjct: 360 LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 419

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
           ++   G+QP V + N++I  LCK  G +  A K+F EM   GC+P+  TY  +  G  R 
Sbjct: 420 NLSSKGLQPNVWTYNIMIHGLCK-QGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRN 478

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLI-----NGLCQS-------------------- 239
            +     EL +EM  +  S  V T T L+     +GL QS                    
Sbjct: 479 NEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMR 538

Query: 240 ---------------------KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                                 ++++A+  F  M      P+   ++ L+  + K    S
Sbjct: 539 SLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYS 598

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
             + L   M S    P++ T + L+N  C   +L  A  +L ++   G +PD   YG ++
Sbjct: 599 TVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLM 658

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS- 397
           +  C             +M+  GI+P+  T+       N+++  LC     +     L+ 
Sbjct: 659 NGLC-------------KMITKGISPDIFTY-------NSLIHALCNLCEWKHVTTLLNE 698

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M N  I  + + +S+++   CK+G I  +  +VD ++  G  PD  T++A+M     R +
Sbjct: 699 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 758

Query: 458 MRQAAELLLLELMNKCV 474
           M +A ++    +   CV
Sbjct: 759 MDEAVKVFDTMVHKGCV 775



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
            +++EA+  F  M  K   P+   ++ L+  + K    S  + L + M S    P++ T 
Sbjct: 24  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + ++N LC   ++  A   L ++   G +PDA  +  +I   C  GK  EA +  D+M+ 
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 143

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            G  PN +T+        T++ GLCK      AF ++  M  + IS + +TY+SLI   C
Sbjct: 144 EGFQPNVVTYG-------TLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLC 196

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           K  +      +++E+V    +PD  T + V+ AL     + +A +++ + ++++ VE  V
Sbjct: 197 KLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM-MIHRGVEPNV 255

Query: 479 DIQN 482
              N
Sbjct: 256 VTYN 259



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 36/243 (14%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           FS ++  L        A D++D + K   +     + ++  G+       +A++VFD M 
Sbjct: 711 FSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMV 770

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             GC P  +SY  ++    +  ++  A      M   G+     + N LI  LC + G +
Sbjct: 771 HKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLC-HVGRL 829

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTL----------------------------------- 197
             A  +F EM   G  PD  TY  L                                   
Sbjct: 830 QHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIA 889

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+G+CR G++  A++LF  + +K   P V TY  +I+GLC+   ++EA +LF +M    +
Sbjct: 890 IDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDI 949

Query: 258 EPN 260
             N
Sbjct: 950 WSN 952


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 216/483 (44%), Gaps = 76/483 (15%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSIC---RGYGRVH 99
           F+ D   ++ MIS L  A+ F  A D L R+    C    +T  I L  C   R  GR  
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCK 354

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R L  M     + E GC P+ + + +++           A++  + M + G QP     N
Sbjct: 355 RILSMM-----ITE-GCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYN 408

Query: 160 VLIKALCKN----------------------------------------SGTMDAAFKIF 179
           +LI  +C N                                        +G  + A+ I 
Sbjct: 409 ILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSII 468

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           REM ++G  PD+ TY  +I  LC   K+  A  LF+EM++    P V TYT LI+  C+ 
Sbjct: 469 REMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKV 528

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A + F+EM   G  PNV TY++L+    K    S A EL +MM+S+   PN+VTY
Sbjct: 529 GLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL----------------YGKIISCFCD 343
           + L++G CK G++++A +I  RM+     PD  +                YG ++   C 
Sbjct: 589 TALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCK 648

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             K +EA + LD M + G  PN      HI +++ ++ G CK    + A  V+  M  R 
Sbjct: 649 AHKVKEARDLLDVMSVEGCEPN------HI-VYDALIDGFCKVGKLDEAQMVFTKMSERG 701

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              +  TYSSLI    K   +  + +++  ++ + C P+   ++ ++  L    K  +A 
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761

Query: 463 ELL 465
            L+
Sbjct: 762 RLM 764



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 127/483 (26%), Positives = 217/483 (44%), Gaps = 78/483 (16%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHR 100
           + GF  D ST+S +I  L +A++   A  L + +      +  D+F    +   + +V  
Sbjct: 473 SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH--VVPDVFTYTILIDSFCKVGL 530

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A + FD+M   GC P   +Y  ++   ++  ++  A   +  M   G  P V +   
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDS----------------YTYGTLINGLCRL 204
           LI   CK SG ++ A +I+  M      PD                 +TYG L++GLC+ 
Sbjct: 591 LIDGHCK-SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA 649

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            K+ EA++L   M  + C P  + Y +LI+G C+   ++EA  +F +M  +G  PNV+TY
Sbjct: 650 HKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTY 709

Query: 265 SSL-----------------------------------MDGLCKGGCSSQAMELLQMMIS 289
           SSL                                   +DGLCK G + +A  L+ MM  
Sbjct: 710 SSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEE 769

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   PN+VTY+ +++G  K GK+ + +E++ +M  +G  P+   Y  +I+  C  G   +
Sbjct: 770 KGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDD 829

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN---RSISVD 406
           A   LDEM        +  W  H+  +  V++G      NR F + L + +    +++V 
Sbjct: 830 AHQLLDEM-------KQTYWPKHMAGYRKVIEGF-----NREFIISLGLLDEIAENVAVP 877

Query: 407 SL-TYSSLITCFCKKGDIHKSARIVDELVLDGCL----PDEGTWSAVMTALWDRRKMRQA 461
            +  Y  LI  FCK G +  +  +     +  C      D+  +S+++ +L    K+ +A
Sbjct: 878 IIPAYRILIDSFCKAGRLELALEL--HKXMSSCTSYSAADKDLYSSLIESLSLASKVDKA 935

Query: 462 AEL 464
            EL
Sbjct: 936 FEL 938



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 200/437 (45%), Gaps = 18/437 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+ H    +  ++  L      R  E  L  +  E  +I   +   + R   R      A
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVA 216

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +    ++K+ G +P+  +Y  ++ + +E ++L  A+  +R M + G      +L   +  
Sbjct: 217 LEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHL 276

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK     +A   I +E        D+  Y  +I+GLC      EA +    M + +C P
Sbjct: 277 LCKAGRWREALALIEKEEFKL----DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIP 332

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY  L+ G  + + +    R+   M ++G  P+   ++SL+   C+ G  S A +LL
Sbjct: 333 NVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQ--EAVEILDRMKLQGLKPDAGL----YGKII 338
           + M     +P  V Y+ L+ G+C   KL   + +E+ ++   + L     L       + 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
            C C  GK+++A + + EM+  G  P+  T+S        V+  LC     + AF ++  
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSKGFIPDTSTYS-------KVIGLLCNASKVDNAFLLFEE 505

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M++  +  D  TY+ LI  FCK G + ++ +  DE+V DGC P+  T++A++ A    RK
Sbjct: 506 MKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARK 565

Query: 458 MRQAAELLLLELMNKCV 474
           M  A EL  + L   C+
Sbjct: 566 MSSANELFEMMLSEGCI 582


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 205/430 (47%), Gaps = 37/430 (8%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRV--------------------NKEKCDITE 85
           FRH   ++  MI  L +   F  A+ L+  V                      ++ DI  
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIY- 67

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +F  +   Y       DA+  +   +E        +   VL  L++    KL + FY  
Sbjct: 68  -VFSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYED 126

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           + E G    +   N+L+   CK+ G +  A  +F  +   G  P   +Y TL+NG  RLG
Sbjct: 127 ILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 185

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + E   L   M      P V TY+ LINGLC+   +++A  LF+EM  KG+ PN  T++
Sbjct: 186 DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFT 245

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG CK G    AME+ + M+S+   P+++TY+TL+ GLCK+G L++A +++D M ++
Sbjct: 246 TLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMK 305

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GLKPD   Y  +I   C  G    A      M+   I  + + ++        ++ GLC+
Sbjct: 306 GLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT-------ALISGLCQ 358

Query: 386 ----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
                D  +  +  LS+    +  D  TY+ +I  FCKKGD+ K ++++ E+  +G  P 
Sbjct: 359 EGRSVDAEKMLREMLSV---GLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPS 415

Query: 442 EGTWSAVMTA 451
             T++ +M  
Sbjct: 416 VVTYNVLMNG 425


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 189/392 (48%), Gaps = 30/392 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+  F++M      P+   +  +L  + +           R M   GI P V +L ++I
Sbjct: 53  EALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVI 112

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            +LC +   +D AF    ++   G  PD+ T+ TLI GLC  GKI EA  LF +M  +  
Sbjct: 113 NSLC-HLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGF 171

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY +LINGLC+  +   A+RL   M     +PNV  +S+L+D LCK    ++A  
Sbjct: 172 QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFN 231

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   MI+K   PNIVTY++L++GLCK  + +    +++ M    + PD      ++   C
Sbjct: 232 IFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALC 291

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH-------------------------- 376
             G   EA + +D M+  G+ PN +T++  +  H                          
Sbjct: 292 KEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVI 351

Query: 377 --NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             NT++ G CK    ++A  ++  M  + ++ +++TY++LI   C  G +  +  +  E+
Sbjct: 352 SYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEM 411

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V  G +PD  T+  +   L   R + +A  LL
Sbjct: 412 VARGQIPDLVTYRTLSDYLCKNRHLDKAMALL 443



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 211/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ +I  L    +   A  L D++  E        + ++  G  +V     A
Sbjct: 135 GHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAA 194

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M++  C+P    + T++  L ++ Q+  AF  +  M   GI P + + N LI  
Sbjct: 195 IRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHG 254

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK          +  EM +    PD +T  T+++ LC+ G + EA ++   M  +   P
Sbjct: 255 LCKLC-EWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEP 313

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +L++G C    V+ A+++F+ M  K    NV +Y++L++G CK     +AM L 
Sbjct: 314 NVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLF 373

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +   PN VTY+TL++GLC  G+LQ+A+ +   M  +G  PD   Y  +    C  
Sbjct: 374 EEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK- 432

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
            ++ + A  L + + G        W   I+I+ T++ G+C+  +   A  ++ ++ ++ +
Sbjct: 433 NRHLDKAMALLKAIEGS------NWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGL 486

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TY+ +I   CK+G + +++++  E+  +GC P++ T++ +        +  +  E
Sbjct: 487 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIE 546

Query: 464 LL 465
           LL
Sbjct: 547 LL 548



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 201/439 (45%), Gaps = 48/439 (10%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIR    E  + +AL +FD    E   GF+ +  T+  +I+ L        A  LL  + 
Sbjct: 146 LIRGLCVEGKIGEALHLFDKMIGE---GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 202

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +  C     +F ++     +  +  +A  +F +M   G  P   +Y +++  L +  + K
Sbjct: 203 QGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK 262

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNS---------------------------- 169
                   M +  I P V +LN ++ ALCK                              
Sbjct: 263 HVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALM 322

Query: 170 ------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
                   +D A K+F  M ++ C  +  +Y TLING C++  + +A  LF+EM  +  +
Sbjct: 323 DGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT 382

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY +LI+GLC    +++A+ LF EM ++G  P++ TY +L D LCK     +AM L
Sbjct: 383 PNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMAL 442

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ +      P+I  Y+T+L+G+C+ G+L++A ++   +  +GL+P+   Y  +I   C 
Sbjct: 443 LKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 502

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRS 402
            G   EA+    EM   G +PN  T++L       + +G  + +   R  ++   M  R 
Sbjct: 503 QGLLAEASKLFSEMNKNGCSPNDCTYNL-------ITRGFLRNNEALRTIELLEEMLARG 555

Query: 403 ISVDSLTYSSLITCFCKKG 421
            SVD  T + L+      G
Sbjct: 556 FSVDVSTTTLLVGMLSDDG 574



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 150/305 (49%), Gaps = 8/305 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T+D A   F  M ++   P +  +  L+  + +         L ++M++    P V T  
Sbjct: 50  TLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLA 109

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            +IN LC    V+ A     ++   G +P+  T+++L+ GLC  G   +A+ L   MI +
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN+VTY TL+NGLCK G    A+ +L  M+    +P+  ++  +I   C   +  EA
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
            N   EM+  GI+PN +T+       N+++ GLCK    +     ++ M +  I  D  T
Sbjct: 230 FNIFSEMITKGISPNIVTY-------NSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
            ++++   CK+G + ++  +VD ++  G  P+  T++A+M     R ++  A ++    +
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342

Query: 470 MNKCV 474
              CV
Sbjct: 343 HKDCV 347


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 211/407 (51%), Gaps = 9/407 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  +F ++I     A +   + DLL  + +        I+ ++  G  +      A  +F
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M +FG      +Y  ++  L +    K  F  Y  M+E G+ P + + N ++  LCK+
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKD 281

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
             T DA FK+F EM  RG + +  TY TLI GLCR  K  EA ++  +M++   +P ++T
Sbjct: 282 GRTKDA-FKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLIT 340

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI+G C    + +A+ L  +++S+G+ P++ TY+ L+ G C+ G +S A ++++ M 
Sbjct: 341 YNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEME 400

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +  +P+ VTY+ L++   +   ++ A+++   M+  GL PD   Y  +I  FC  G+  
Sbjct: 401 ERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMN 460

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDS 407
           EA+     MV   + PN +       I+NT++ G CK   + RA +++  M  + ++ + 
Sbjct: 461 EASRLFKSMVEKMLEPNEV-------IYNTMILGYCKEGSSYRALRLFRDMEEKELAPNV 513

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            +YS LI   CK+  + ++  +V++++  G  P +   + +  A  D
Sbjct: 514 ASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISRAKTD 560



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 220/427 (51%), Gaps = 20/427 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF-----LSICRGYGRVH 99
           GF   ++ F+ +++ +V ++ F          N+ K  +  D++     +  C   G + 
Sbjct: 124 GFVPGSNCFNNLLTFVVGSSSFNQWWCFF---NESKIKVVLDVYSFGIVIKGCCEAGEIE 180

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           +  D +    +++EFG  P    Y T++    ++ +++ A   +  M + G+     +  
Sbjct: 181 KSFDLLV---ELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYT 237

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           VLI  L KN G     F+++ +M   G  P+ YTY  ++N LC+ G+  +A ++F EM  
Sbjct: 238 VLIHGLFKN-GIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRE 296

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +  S  +VTY +LI GLC+     EA ++ ++M+S  + PN+ TY++L+DG C  G   +
Sbjct: 297 RGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGK 356

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A+ L + + S+   P++VTY+ L++G C++G    A +++  M+ +G+KP    Y  +I 
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILID 416

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSM 398
            F      + A      M   G+ P+  T+S+       ++ G C K   N A +++ SM
Sbjct: 417 TFARSDNMETAIQLRSSMEELGLVPDVHTYSV-------LIHGFCIKGQMNEASRLFKSM 469

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             + +  + + Y+++I  +CK+G  +++ R+  ++      P+  ++S ++  L   RK+
Sbjct: 470 VEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKL 529

Query: 459 RQAAELL 465
           ++A +L+
Sbjct: 530 KEAEDLV 536



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 217/425 (51%), Gaps = 12/425 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED-IFLSICRGYGRVHRP 101
            N + H  S    +IS  + + QF  +  LL  + + +   T+  ++  I   Y +    
Sbjct: 52  GNLYSHAQSLLLQVISGKIQS-QFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSL 110

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             ++  F++M + G  P    +  +L  +V  +     + F+   + I +   V S  ++
Sbjct: 111 DSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK-IKVVLDVYSFGIV 169

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IK  C+ +G ++ +F +  E+   G +P+   Y TLI+G C+ G+I +AK+LF EM    
Sbjct: 170 IKGCCE-AGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFG 228

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
                 TYT LI+GL ++   ++   ++E+M+  GV PN++TY+ +M+ LCK G +  A 
Sbjct: 229 LVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAF 288

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   M  +    NIVTY+TL+ GLC+E K  EA +++D+MK   + P+   Y  +I  F
Sbjct: 289 KVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGF 348

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRN 400
           C +GK  +A +   ++   G++P+ +T+       N +V G C K D + A ++   M  
Sbjct: 349 CSVGKLGKALSLCRDLKSRGLSPSLVTY-------NVLVSGFCRKGDTSGAAKMVKEMEE 401

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I    +TY+ LI  F +  ++  + ++   +   G +PD  T+S ++     + +M +
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNE 461

Query: 461 AAELL 465
           A+ L 
Sbjct: 462 ASRLF 466



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+S++I       Q   A  L   + ++  +  E I+ ++  GY +      A
Sbjct: 438 GLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRA 497

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+F  M+E    P   SY  ++ +L +E +LK A      M + GI P     N++ +A
Sbjct: 498 LRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISRA 557


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 216/483 (44%), Gaps = 76/483 (15%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSIC---RGYGRVH 99
           F+ D   ++ MIS L  A+ F  A D L R+    C    +T  I L  C   R  GR  
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCK 354

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R L  M     + E GC P+ + + +++           A++  + M + G QP     N
Sbjct: 355 RILSMM-----ITE-GCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYN 408

Query: 160 VLIKALCKN----------------------------------------SGTMDAAFKIF 179
           +LI  +C N                                        +G  + A+ I 
Sbjct: 409 ILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSII 468

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           REM ++G  PD+ TY  +I  LC   K+  A  LF+EM++    P V TYT LI+  C+ 
Sbjct: 469 REMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKV 528

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A + F+EM   G  PNV TY++L+    K    S A EL +MM+S+   PN+VTY
Sbjct: 529 GLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL----------------YGKIISCFCD 343
           + L++G CK G++++A +I  RM+     PD  +                YG ++   C 
Sbjct: 589 TALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCK 648

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
             K +EA + LD M + G  PN      HI +++ ++ G CK    + A  V+  M  R 
Sbjct: 649 AHKVKEARDLLDVMSVEGCEPN------HI-VYDALIDGFCKVGKLDEAQMVFTKMSERG 701

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              +  TYSSLI    K   +  + +++  ++ + C P+   ++ ++  L    K  +A 
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761

Query: 463 ELL 465
            L+
Sbjct: 762 RLM 764



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 218/483 (45%), Gaps = 78/483 (16%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHR 100
           + GF  D ST+S +I  L +A++   A  L + +      +  D+F    +   + +V  
Sbjct: 473 SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH--VVPDVFTYTILIDSFCKVGL 530

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A + FD+M   GC P   +Y  ++   ++  ++  A   +  M   G  P V +   
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDS----------------YTYGTLINGLCRL 204
           LI   CK SG ++ A +I+  M      PD                 +TYG L++GLC+ 
Sbjct: 591 LIDGHCK-SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA 649

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
            K+ EA++L   M  + C P  + Y +LI+G C+   ++EA  +F +M  +G  PNV+TY
Sbjct: 650 HKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTY 709

Query: 265 SSL-----------------------------------MDGLCKGGCSSQAMELLQMMIS 289
           SSL                                   +DGLCK G + +A  L+ MM  
Sbjct: 710 SSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEE 769

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   PN+VTY+ +++G  K GK+ + +E++ +M  +G  P+   Y  +I+  C  G   +
Sbjct: 770 KGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDD 829

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN---RSISVD 406
           A   LDEM        +  W  H+  +  V++G      NR F + L + +    +++V 
Sbjct: 830 AHQLLDEM-------KQTYWPKHMAGYRKVIEGF-----NREFIISLGLLDEIAENVAVP 877

Query: 407 SL-TYSSLITCFCKKGDIHKSARIVDELVLDGCL----PDEGTWSAVMTALWDRRKMRQA 461
            +  Y  LI  FCK G +  +  +  E  +  C      D+  +S+++ +L    K+ +A
Sbjct: 878 IIPAYRILIDSFCKAGRLELALELHKE--MSSCTSYSAADKDLYSSLIESLSLASKVDKA 935

Query: 462 AEL 464
            EL
Sbjct: 936 FEL 938



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 200/437 (45%), Gaps = 18/437 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+ H    +  ++  L      R  E  L  +  E  +I   +   + R   R      A
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVA 216

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +    ++K+ G +P+  +Y  ++ + +E ++L  A+  +R M + G      +L   +  
Sbjct: 217 LEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHL 276

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK     +A   I +E        D+  Y  +I+GLC      EA +    M + +C P
Sbjct: 277 LCKAGRWREALALIEKEEFKL----DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIP 332

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY  L+ G  + + +    R+   M ++G  P+   ++SL+   C+ G  S A +LL
Sbjct: 333 NVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQ--EAVEILDRMKLQGLKPDAGL----YGKII 338
           + M     +P  V Y+ L+ G+C   KL   + +E+ ++   + L     L       + 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
            C C  GK+++A + + EM+  G  P+  T+S        V+  LC     + AF ++  
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSKGFIPDTSTYS-------KVIGLLCNASKVDNAFLLFEE 505

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M++  +  D  TY+ LI  FCK G + ++ +  DE+V DGC P+  T++A++ A    RK
Sbjct: 506 MKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARK 565

Query: 458 MRQAAELLLLELMNKCV 474
           M  A EL  + L   C+
Sbjct: 566 MSSANELFEMMLSEGCI 582



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVF 108
           T++ MI     A +     +L+ ++  + C    +T  + ++ C   G +    DA ++ 
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLD---DAHQLL 834

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+MK+         Y  V+     E  + L       + E    P + +  +LI + CK 
Sbjct: 835 DEMKQTYWPKHMAGYRKVIEGFNREFIISLGL--LDEIAENVAVPIIPAYRILIDSFCK- 891

Query: 169 SGTMDAAFKIFREMPNRGCT----PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           +G ++ A ++ +EM +  CT     D   Y +LI  L    K+ +A EL+ +M  +   P
Sbjct: 892 AGRLELALELHKEMSS--CTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIP 949

Query: 225 TVVTYTSLINGLCQSKSVEEAMRL 248
            +  +  L+ GL +    EEA++L
Sbjct: 950 ELSIFFYLVKGLIRINRWEEALQL 973


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 218/450 (48%), Gaps = 20/450 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSL--MISKLVSANQFRPAE 70
           I    VL L RA    ++ L  +D+      +  RH  ST S+  +++ LV A +   AE
Sbjct: 121 IADMLVLALARA----SQPLRAYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAE 176

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
                  + +       F ++  G  R+ +   A  V   +K +G  P+  +Y +++   
Sbjct: 177 KAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGY 236

Query: 131 VEENQLKLAFR---FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            ++      +      + M E GI P   +  VLI   CKNS T  AA ++F EM  +G 
Sbjct: 237 CKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTA-AAVRVFEEMKQQGI 295

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                TY +LI+GLC  GK+ E  +L +EME    SP  +T+  ++ G C+   + +A  
Sbjct: 296 AASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADAND 355

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
             + M  + VEP+V  Y+ L+DG  + G    AM + + M  K   PN+ TY+ L+ G  
Sbjct: 356 WIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFS 415

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           + G  + A  +LD MK +G++ D   Y  +I   C  G+ ++A   LDEM   G+ PN L
Sbjct: 416 RSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHL 475

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+       NT++QG C K +   A+++   M       + +TY+  I  FC+ G + ++
Sbjct: 476 TY-------NTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEA 528

Query: 427 ARIVDELVLDGCL-PDEGTWSAVMTALWDR 455
             +++E+ LD CL P+  T+  +   + ++
Sbjct: 529 NDLLNEM-LDKCLVPNGITYETIKEGMMEK 557



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 189/360 (52%), Gaps = 11/360 (3%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK--NSGTMDAA 175
           P   ++ TV++ L    QL+ A    + ++  G+ P VA+ N LI   CK   +G M   
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             + +EM   G +P + T+G LING C+      A  +F+EM+ +  + +VVTY SLI+G
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           LC    VEE ++L EEM   G+ PN  T+  ++ G CK G  + A + +  M  +   P+
Sbjct: 309 LCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPD 368

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +V Y+ L++G  + GK+++A+ + + M  +G+ P+   Y  +I+ F   G ++ A+  LD
Sbjct: 369 VVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLD 428

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
           EM   GI  + +T+       N ++  L CK +  +A ++   M    +  + LTY+++I
Sbjct: 429 EMKEKGIEADVVTY-------NVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             FC KG+I  +  I   +       +  T++  +       KM +A + LL E+++KC+
Sbjct: 482 QGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAND-LLNEMLDKCL 540



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 177/352 (50%), Gaps = 47/352 (13%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI---- 207
           +P  +S+N L+  L   +  +D A K FR    R  +PD YT+ T+I+GLCR+G++    
Sbjct: 153 RPSTSSVNALLAGLV-GAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 208 ----------------------------------YEAKELFKEMETKACSPTVVTYTSLI 233
                                             Y    L KEM     SPT VT+  LI
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           NG C++ +   A+R+FEEM+ +G+  +V TY+SL+ GLC  G   + ++L++ M      
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN +T+  +L G CK+G + +A + +D M  + ++PD  +Y  +I  +  +GK ++A   
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAV 391

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSS 412
            + M   GI+PN  T+       N ++ G  ++   R+    L  M+ + I  D +TY+ 
Sbjct: 392 KEAMAKKGISPNVTTY-------NCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           LI   C KG++ K+ +++DE+   G  P+  T++ ++    D+  ++ A E+
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEI 496



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 1/231 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  TF  ++           A D +D + +   +    I+  +  GY R+ +  DA
Sbjct: 329 GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDA 388

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M V + M + G  P   +Y  ++         + A      M+E GI+  V + NVLI A
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC   G +  A K+  EM   G  P+  TY T+I G C  G I  A E+   ME      
Sbjct: 449 LC-CKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRA 507

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            VVTY   I   CQ   ++EA  L  EM  K + PN  TY ++ +G+ + G
Sbjct: 508 NVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 114/259 (44%), Gaps = 1/259 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +IS L S  +      L++ +        E  F  + +G+ +     DA    D M
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM 360

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E   EP    Y  ++       +++ A      M + GI P V + N LI    + SG 
Sbjct: 361 TERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSR-SGD 419

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
             +A  +  EM  +G   D  TY  LI  LC  G++ +A +L  EM      P  +TY +
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I G C   +++ A  +   M       NV TY+  +   C+ G   +A +LL  M+ K 
Sbjct: 480 IIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKC 539

Query: 292 HRPNIVTYSTLLNGLCKEG 310
             PN +TY T+  G+ ++G
Sbjct: 540 LVPNGITYETIKEGMMEKG 558


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 213/410 (51%), Gaps = 9/410 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG  HD+ ++++++  L  A     A    D + K   +     + ++ +G+  +     
Sbjct: 300 NGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSG 359

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A +V  KM   G  P   +Y T++    +   ++ A +  +     G +  V   N+L+ 
Sbjct: 360 ARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLS 419

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G ++ A  +F EM      PD   Y  LI+GLC+ G +  A +L+++M  K   
Sbjct: 420 CLCK-VGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKF 478

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P      +++ GL ++ ++ EA   F+      +  +V  Y+ ++DG  +    ++AM+L
Sbjct: 479 PHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQL 538

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI +   P++VT++TL+NG C+ G L EA ++L+ ++L+GL P    Y  +++ +C+
Sbjct: 539 YYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCE 598

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           +G  QE  +FL EM    + P  +T+++       +++GLC+ +  + + Q+   M  + 
Sbjct: 599 VGNMQEMFHFLHEMEANAVVPTHVTYTV-------LIKGLCRQNKMHESLQLLEYMYAKG 651

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +  DS+TY+++I CFCK  +I K+ ++ + ++L  C P + T+  ++ AL
Sbjct: 652 LLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINAL 701



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 192/374 (51%), Gaps = 9/374 (2%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +V R  +A+ +FD+M+    EP    Y  ++  L +E  ++ A++ Y  MR     P   
Sbjct: 423 KVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHF 482

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +   ++  L KN G +  A   F          D   Y  +I+G  RL  I EA +L+ +
Sbjct: 483 AQRAVLLGLFKN-GNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYK 541

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +  +P+VVT+ +LING C+   + EA ++ E +R KG+ P+V TY++LM+  C+ G 
Sbjct: 542 MIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGN 601

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +    L  M +    P  VTY+ L+ GLC++ K+ E++++L+ M  +GL PD+  Y  
Sbjct: 602 MQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNT 661

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVY 395
           II CFC   +  +A    + M+L    P ++T+ +       ++  LC   D     ++ 
Sbjct: 662 IIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKV-------LINALCIFGDLKDVDRMV 714

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           +S+ +R+I++  +TY ++I   C KG + K+    ++++  G +     +SAV+  L  R
Sbjct: 715 VSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKR 774

Query: 456 RKMRQAAELLLLEL 469
             + +A    ++ L
Sbjct: 775 GLITEAKYFFVMML 788



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 197/396 (49%), Gaps = 32/396 (8%)

Query: 100 RPLDAM-RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           R  D M  V++++K  G   +  +   ++  L E+++L+ A  F     ++ + P + S+
Sbjct: 216 RHTDIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDSNKV-VGPSIVSI 274

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N ++   CK  G +D A   F  M   G   DS++Y  L++GLC  G + EA     +ME
Sbjct: 275 NTIMSKFCK-VGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDME 333

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P VVTY +L  G      +  A ++ ++M  +G+ P++ TY++L+ G C+ G   
Sbjct: 334 KHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIE 393

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A++L Q  +S+  + N++ Y+ LL+ LCK G+++EA+ + D M+   L+PD  +Y  +I
Sbjct: 394 EALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILI 453

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRL-----------------------TWSL---- 371
              C  G  Q A    ++M L    P+                         TW+     
Sbjct: 454 HGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLM 513

Query: 372 -HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
             + ++N ++ G  + D    A Q+Y  M  R I+   +T+++LI  FC++GD+ ++ ++
Sbjct: 514 EDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKM 573

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ + L G +P   T++ +M A  +   M++    L
Sbjct: 574 LEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFL 609



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 173/345 (50%), Gaps = 9/345 (2%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           SY  +L  L     +  A  F   M + G++P V + N L K      G M  A K+ ++
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLL-LGLMSGARKVVQK 366

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  +G  PD  TY TLI G C++G I EA +L +E  ++     V+ Y  L++ LC+   
Sbjct: 367 MLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGR 426

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           +EEA+ LF+EM +  +EP+   YS L+ GLCK G   +A +L + M  KR  P+      
Sbjct: 427 IEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRA 486

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           +L GL K G + EA    D      L  D  LY  +I  +  +    EA     +M+  G
Sbjct: 487 VLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERG 546

Query: 362 ITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           ITP+ +T+       NT++ G C + D   A ++   +R + +    +TY++L+  +C+ 
Sbjct: 547 ITPSVVTF-------NTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEV 599

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G++ +    + E+  +  +P   T++ ++  L  + KM ++ +LL
Sbjct: 600 GNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLL 644



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 153/342 (44%), Gaps = 60/342 (17%)

Query: 138 LAFRFYRH------------MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           LAF + RH            M+++  Q  V + N    +L  N    D  + ++ E+   
Sbjct: 176 LAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYN----SLLHNMRHTDIMWDVYNEIKVS 231

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV------------------ 227
           G      T   LI+GLC   K+ +A     +   K   P++V                  
Sbjct: 232 GAPQSECTTSILIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTIMSKFCKVGLIDVA 290

Query: 228 -----------------TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
                            +Y  L++GLC + S++EA+   ++M   GVEP+V TY++L  G
Sbjct: 291 RSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKG 350

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
               G  S A +++Q M+ +   P++VTY+TL+ G C+ G ++EA+++      +G K +
Sbjct: 351 FLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLN 410

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PN 389
              Y  ++SC C +G+ +EA    DEM    + P+ + +S+       ++ GLCK     
Sbjct: 411 VIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSI-------LIHGLCKEGFVQ 463

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           RA+Q+Y  MR +          +++    K G+I ++    D
Sbjct: 464 RAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFD 505



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 144/317 (45%), Gaps = 1/317 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D   +++MI   V  +    A  L  ++ +     +   F ++  G+ R    ++A ++ 
Sbjct: 515 DVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKML 574

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + ++  G  P+  +Y T++    E   ++  F F   M    + P   +  VLIK LC+ 
Sbjct: 575 EVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQ 634

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +  M  + ++   M  +G  PDS TY T+I   C+  +I +A +L+  M    C PT VT
Sbjct: 635 N-KMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVT 693

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  LIN LC    +++  R+   +  + +     TY +++   C  G  S+A+     M+
Sbjct: 694 YKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQML 753

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +K    +I  YS ++N LCK G + EA      M  +G+ PD  +   +++ F   G   
Sbjct: 754 AKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNS 813

Query: 349 EAANFLDEMVLGGITPN 365
               FL  +V  G   +
Sbjct: 814 SVFEFLAMVVKSGFISH 830



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 36/197 (18%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           YA G   D+ T++ +I                      +C          C+G       
Sbjct: 648 YAKGLLPDSVTYNTII----------------------QC---------FCKG----KEI 672

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A+++++ M    C+PT  +Y  ++  L     LK   R    + +  I     +   +
Sbjct: 673 TKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTI 732

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IKA C   G +  A   F +M  +G       Y  +IN LC+ G I EAK  F  M ++ 
Sbjct: 733 IKAHCA-KGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEG 791

Query: 222 CSPTVVTYTSLINGLCQ 238
            +P      +++N   Q
Sbjct: 792 VTPDPEICKTVLNAFHQ 808


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 219/444 (49%), Gaps = 17/444 (3%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           L++++     AL ++  A  +   G + DN T S++++ L    +   AE++L  + +  
Sbjct: 216 LLKSDDGAGAALDLYREAIGK---GVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHG 272

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
               E I+ +I  GY ++     A+   ++M+  G  P   ++ +V+    E   +  A 
Sbjct: 273 LVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAE 332

Query: 141 RFYRHMREIGIQPCVASLNVLIKA---LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            + + M   GI P V + N+LI     LC         F+I  EM   G  P+  +YG+L
Sbjct: 333 EWVKKMVGKGIAPSVETYNILIDGYGRLC----VFSRCFQILEEMEENGEKPNVISYGSL 388

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           IN LC+ GKI EA+ + ++M  +   P    Y  LI+G C    + EA+R F+EM   G+
Sbjct: 389 INCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGI 448

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
              + TY+SL+ GLCK G   +A E+  ++ S  H P+++TY++L++G    G  Q+ +E
Sbjct: 449 GATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLE 508

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           + + MK  GLKP    +  +IS  C     +      +EM+   ++P+R+ ++  I  + 
Sbjct: 509 LYETMKKLGLKPTINTFHPLISG-CSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQ 567

Query: 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
                       +AF +   M +  +  D+ TY+SLI    K+G + ++  +VD++   G
Sbjct: 568 ETGH------VQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKG 621

Query: 438 CLPDEGTWSAVMTALWDRRKMRQA 461
            +P+  T+S ++    D +    A
Sbjct: 622 LIPEADTYSLLIQGHCDLKDFNGA 645



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 193/391 (49%), Gaps = 35/391 (8%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           + + +F +M   G  P    Y   +   V+   LKLA   +  M+   + P V   NVLI
Sbjct: 49  NVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLI 108

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK     DA  K+F EM  R   P+  T+ TLI+G C+ G++  A  L + M+ +  
Sbjct: 109 GGLCKEKRIRDAE-KLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKV 167

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG-GCSSQAM 281
            P+++T+ SL++GLC+++ +EEA  +  E++  G  P+ FTYS + DGL K    +  A+
Sbjct: 168 EPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAAL 227

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +L +  I K  + +  T S LLNGLCKEGK+++A E+L  +   GL P   +Y  I++ +
Sbjct: 228 DLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGY 287

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTW----------------------------SLHI 373
           C IG    A   +++M   G+ PN + +                            +  +
Sbjct: 288 CQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSV 347

Query: 374 RIHNTVVQG---LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
             +N ++ G   LC    +R FQ+   M       + ++Y SLI C CK G I ++  ++
Sbjct: 348 ETYNILIDGYGRLCVF--SRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVL 405

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            ++V  G LP+   ++ ++       K+R+A
Sbjct: 406 RDMVGRGVLPNANIYNMLIDGSCTVGKLREA 436



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 204/414 (49%), Gaps = 8/414 (1%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++++I  L    + R AE L   ++          F ++  GY +      A+ + ++M
Sbjct: 103 VYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERM 162

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+   EP+  ++ ++L+ L +  +++ A      ++  G  P   + +++   L K+   
Sbjct: 163 KKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDG 222

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
             AA  ++RE   +G   D+YT   L+NGLC+ GK+ +A+E+ K +      P  V Y +
Sbjct: 223 AGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNT 282

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           ++NG CQ   ++ A+   E+M S+G+ PN   ++S++D  C+     +A E ++ M+ K 
Sbjct: 283 IVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKG 342

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++ TY+ L++G  +        +IL+ M+  G KP+   YG +I+C C  GK  EA 
Sbjct: 343 IAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAE 402

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTY 410
             L +MV  G+ PN         I+N ++ G C     R A + +  M    I    +TY
Sbjct: 403 MVLRDMVGRGVLPNA-------NIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTY 455

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +SLI   CK G + ++  +   +   G  PD  T++++++   +    ++  EL
Sbjct: 456 NSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLEL 509



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 220/478 (46%), Gaps = 65/478 (13%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I     A +   A  L +R+ KEK + +   F S+  G  +  R  +A  + +++
Sbjct: 138 TFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEI 197

Query: 112 KEFGCEPTPKSYITVL-AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           K  G  P   +Y  +   +L  ++    A   YR     G++    + ++L+  LCK  G
Sbjct: 198 KCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCK-EG 256

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++ A ++ + +   G  P    Y T++NG C++G +  A    ++ME++   P  + + 
Sbjct: 257 KVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFN 316

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           S+I+  C+ + +++A    ++M  KG+ P+V TY+ L+DG  +    S+  ++L+ M   
Sbjct: 317 SVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEEN 376

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN+++Y +L+N LCK+GK+ EA  +L  M  +G+ P+A +Y  +I   C +GK +EA
Sbjct: 377 GEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREA 436

Query: 351 ANFLDEMVLGG-----ITPNRLTWSL-----------------------HIRIHNTVVQG 382
             F DEM   G     +T N L   L                        +  +N+++ G
Sbjct: 437 LRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISG 496

Query: 383 LCKT-DPNRAFQVYLSMR----------------------------------NRSISVDS 407
                +  +  ++Y +M+                                    ++S D 
Sbjct: 497 YSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDR 556

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + Y+++I C+ + G + K+  +  E+V  G  PD  T+++++       K+ +  +L+
Sbjct: 557 VVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLV 614



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 172/363 (47%), Gaps = 45/363 (12%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           +L++  E          Y  MR+ G  P    + +++++L + S   D    +F+EM   
Sbjct: 2   LLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVE-SKKFDNVLDLFKEMVGL 60

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD   YG  +    +LG +  A ELF+ M+ +   P V  Y  LI GLC+ K + +A
Sbjct: 61  GFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDA 120

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            +LF EM  + + PN  T+++L+DG CK G    A+ L + M  ++  P+I+T+++LL+G
Sbjct: 121 EKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSG 180

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLY-------------------------GK---- 336
           LCK  +++EA  +L+ +K  G  PD   Y                         GK    
Sbjct: 181 LCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKI 240

Query: 337 -------IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388
                  +++  C  GK ++A   L  +V  G+ P  +       I+NT+V G C+  D 
Sbjct: 241 DNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEV-------IYNTIVNGYCQIGDM 293

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           +RA      M +R +  + + ++S+I  FC+   I K+   V ++V  G  P   T++ +
Sbjct: 294 DRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNIL 353

Query: 449 MTA 451
           +  
Sbjct: 354 IDG 356



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 176/373 (47%), Gaps = 38/373 (10%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+++A++  +   +    G R +   F+ +I K         AE+ + ++  +    + +
Sbjct: 292 DMDRAILTIEQMESR---GLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVE 348

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +  +  GYGR+       ++ ++M+E G +P   SY +++  L ++ ++  A    R M
Sbjct: 349 TYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDM 408

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G+ P     N+LI   C   G +  A + F EM   G      TY +LI GLC++GK
Sbjct: 409 VGRGVLPNANIYNMLIDGSC-TVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGK 467

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + EA+E+F  + +    P V+TY SLI+G   + + ++ + L+E M+  G++P + T+  
Sbjct: 468 LKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHP 527

Query: 267 LMDGLCKGGCSSQAM---ELLQM-------------------------------MISKRH 292
           L+ G  K G   +     E+LQM                               M+    
Sbjct: 528 LISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGV 587

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           RP+  TY++L+ G  KEGKL E  +++D MK +GL P+A  Y  +I   CD+  +  A  
Sbjct: 588 RPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYV 647

Query: 353 FLDEMVLGGITPN 365
           +  EM+  G  PN
Sbjct: 648 WYREMLENGFLPN 660



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 147/312 (47%), Gaps = 11/312 (3%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++ ++C  S       +++  M   G  P       ++  L    K     +LFKEM   
Sbjct: 1   MLLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGL 60

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  + Y   +    +   ++ AM LFE M+ + V PNVF Y+ L+ GLCK      A
Sbjct: 61  GFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDA 120

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +L   M  +   PN VT++TL++G CK G++  A+ + +RMK + ++P    +  ++S 
Sbjct: 121 EKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSG 180

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD--PNRAFQVYLSM 398
            C   + +EA   L+E+   G  P+  T+S+       +  GL K+D     A  +Y   
Sbjct: 181 LCKARRIEEARCMLNEIKCNGFVPDGFTYSI-------IFDGLLKSDDGAGAALDLYREA 233

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             + + +D+ T S L+   CK+G + K+  ++  LV  G +P E  ++ ++        M
Sbjct: 234 IGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDM 293

Query: 459 RQAAELLLLELM 470
            +A  +L +E M
Sbjct: 294 DRA--ILTIEQM 303



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 144/319 (45%), Gaps = 2/319 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG + +  ++  +I+ L    +   AE +L  +         +I+  +  G   V +  +
Sbjct: 376 NGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLRE 435

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+R FD+M + G   T  +Y +++  L +  +LK A   +  +   G  P V + N LI 
Sbjct: 436 ALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLIS 495

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
               N+G      +++  M   G  P   T+  LI+G  + G I   + LF EM     S
Sbjct: 496 GY-SNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG-IKLKETLFNEMLQMNLS 553

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  V Y ++I+   ++  V++A  L +EM   GV P+  TY+SL+ G  K G  S+  +L
Sbjct: 554 PDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDL 613

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M +K   P   TYS L+ G C       A      M   G  P+  +  ++ +    
Sbjct: 614 VDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRK 673

Query: 344 IGKYQEAANFLDEMVLGGI 362
            G+ QEA +   EM+  G+
Sbjct: 674 DGRLQEAQSICSEMIANGM 692



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 5/260 (1%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +AL  FD  +    NG      T++ +I  L    + + AE++   +           + 
Sbjct: 435 EALRFFDEMSK---NGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYN 491

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           S+  GY         + +++ MK+ G +PT  ++  +++   +E  +KL    +  M ++
Sbjct: 492 SLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG-IKLKETLFNEMLQM 550

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            + P     N +I    + +G +  AF + +EM + G  PD+ TY +LI G  + GK+ E
Sbjct: 551 NLSPDRVVYNAMIHCY-QETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSE 609

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            K+L  +M+ K   P   TY+ LI G C  K    A   + EM   G  PNV   + L  
Sbjct: 610 TKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELST 669

Query: 270 GLCKGGCSSQAMELLQMMIS 289
           GL K G   +A  +   MI+
Sbjct: 670 GLRKDGRLQEAQSICSEMIA 689



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 3/227 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  T++ +IS   +A   +   +L + + K     T + F  +  G  +    L
Sbjct: 480 STGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKL 539

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
               +F++M +    P    Y  ++    E   ++ AF   + M ++G++P   + N LI
Sbjct: 540 KET-LFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLI 598

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K  G +     +  +M  +G  P++ TY  LI G C L     A   ++EM     
Sbjct: 599 LGHLK-EGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGF 657

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            P V     L  GL +   ++EA  +  EM + G++ N+ T   L D
Sbjct: 658 LPNVCICNELSTGLRKDGRLQEAQSICSEMIANGMD-NLDTNEDLSD 703


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 194/378 (51%), Gaps = 12/378 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V  KM + G EP   +  ++L       ++  A      M E+G +P   +   LI 
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIH 196

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L  ++   +A   +  +M  RGC PD  TYGT++NGLC+ G I  A  L  +ME     
Sbjct: 197 GLFLHNKASEAV-ALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIK 255

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VV + ++I+ LC+ + VE A+ LF EM +KG+ PNV TY+SL++ LC  G  S A  L
Sbjct: 256 ANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRL 315

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  M+ K+  PN+VT++ L++   KEGKL EA ++ + M  + + PD   Y  +I+ FC 
Sbjct: 316 LSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCM 375

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
             +  EA      MV     PN       I+ +NT++ G CK        +++  M  R 
Sbjct: 376 HNRLDEAKQMFKFMVSKDCLPN-------IQTYNTLINGFCKCKRVEDGVELFREMSQRG 428

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +  +++TY+++I  F + GD   +  +  ++V +    D  T+S ++  L    K+  A 
Sbjct: 429 LVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTA- 487

Query: 463 ELLLLELMNKCVEAEVDI 480
            L++ + + K  E E++I
Sbjct: 488 -LVIFKYLQKS-EMELNI 503



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 223/455 (49%), Gaps = 35/455 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  T S +++    + +   A  L+D++ +         F ++  G    ++  +A
Sbjct: 148 GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + D+M + GC+P   +Y TV+  L +   + LA      M    I+  V   N +I +
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDS 267

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK    ++ A  +F EM  +G  P+  TY +LIN LC  G+  +A  L   M  K  +P
Sbjct: 268 LCKYR-HVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINP 326

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVT+ +LI+   +   + EA +L EEM  + ++P+  TY+ L++G C      +A ++ 
Sbjct: 327 NVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMF 386

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+SK   PNI TY+TL+NG CK  ++++ VE+   M  +GL  +   Y  II  F   
Sbjct: 387 KFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQA 446

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWS----------------------------LHIRIH 376
           G    A     +MV   +  + +T+S                            L+I I+
Sbjct: 447 GDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIY 506

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           NT+++G+CK      A+ ++ S+   SI  D +TY+++I+  C K  + ++  +  ++  
Sbjct: 507 NTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           DG LP+ GT++ ++ A  + R   +AA   L++ M
Sbjct: 564 DGTLPNSGTYNTLIRA--NLRDCDRAASAELIKEM 596



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/413 (30%), Positives = 201/413 (48%), Gaps = 12/413 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+  +++ L        A +LL+++   +      IF +I     +      A
Sbjct: 218 GCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVA 277

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+  G  P   +Y +++  L    +   A R   +M E  I P V + N LI A
Sbjct: 278 VDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDA 337

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G +  A K+  EM  R   PD+ TY  LING C   ++ EAK++FK M +K C P
Sbjct: 338 FFK-EGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLP 396

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            + TY +LING C+ K VE+ + LF EM  +G+  N  TY++++ G  + G    A  + 
Sbjct: 397 NIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVF 456

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+S R   +I+TYS LL+GLC  GKL  A+ I   ++   ++ +  +Y  +I   C  
Sbjct: 457 KQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKA 516

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSI 403
           GK  EA +    +    I P+ +T+       NT++ GLC K     A  ++  M+    
Sbjct: 517 GKVGEAWDLFCSL---SIKPDVVTY-------NTMISGLCSKRLLQEADDLFRKMKEDGT 566

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
             +S TY++LI    +  D   SA ++ E+   G + D  T S V   L D R
Sbjct: 567 LPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNMLHDGR 619



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 187/364 (51%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M +    P+   +  +L+ + + N+ +L       M+ +GI   + + ++ I
Sbjct: 66  DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI 125

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ S  +  A  +  +M   G  PD  T  +L+NG C   +I +A  L  +M     
Sbjct: 126 NCFCRRS-QLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   T+T+LI+GL       EA+ L ++M  +G +P++ TY ++++GLCK G    A+ 
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALN 244

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M + R + N+V ++T+++ LCK   ++ AV++   M+ +G++P+   Y  +I+C C
Sbjct: 245 LLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLC 304

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           + G++ +A+  L  M+   I PN +T+       N ++    K      A +++  M  R
Sbjct: 305 NYGRWSDASRLLSNMLEKKINPNVVTF-------NALIDAFFKEGKLVEAEKLHEEMIQR 357

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           SI  D++TY+ LI  FC    + ++ ++   +V   CLP+  T++ ++      +++   
Sbjct: 358 SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDG 417

Query: 462 AELL 465
            EL 
Sbjct: 418 VELF 421



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 172/339 (50%), Gaps = 4/339 (1%)

Query: 33  VIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92
           V  D  T     G R +  T++ +I+ L +  ++  A  LL  + ++K +     F ++ 
Sbjct: 276 VAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALI 335

Query: 93  RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ 152
             + +  + ++A ++ ++M +   +P   +Y  ++      N+L  A + ++ M      
Sbjct: 336 DAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCL 395

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P + + N LI   CK     D   ++FREM  RG   ++ TY T+I G  + G    A+ 
Sbjct: 396 PNIQTYNTLINGFCKCKRVEDGV-ELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQM 454

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +FK+M +      ++TY+ L++GLC    ++ A+ +F+ ++   +E N+F Y+++++G+C
Sbjct: 455 VFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMC 514

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G   +A +L     S   +P++VTY+T+++GLC +  LQEA ++  +MK  G  P++G
Sbjct: 515 KAGKVGEAWDLF---CSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSG 571

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
            Y  +I           +A  + EM   G   +  T SL
Sbjct: 572 TYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISL 610



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 148/294 (50%), Gaps = 8/294 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F +M      P    +  L++ + ++ K      L ++M+T   S  + TY+ 
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            IN  C+   +  A+ +  +M   G EP++ T SSL++G C     S A+ L+  M+   
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P+  T++TL++GL    K  EAV ++D+M  +G +PD   YG +++  C  G    A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTY 410
           N L++M    I  N       + I NT++  LCK      A  ++  M  + I  + +TY
Sbjct: 244 NLLNKMEAARIKAN-------VVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTY 296

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +SLI C C  G    ++R++  ++     P+  T++A++ A +   K+ +A +L
Sbjct: 297 NSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKL 350



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 33/268 (12%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++L+I+     N+   A+ +   +  + C      + ++  G+ +  R  D + +F
Sbjct: 362 DTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELF 421

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M + G      +Y T++    +      A   ++ M    +   + + ++L+  LC +
Sbjct: 422 REMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLC-S 480

Query: 169 SGTMDAAFKIFR----------------------------EMPNRGCT----PDSYTYGT 196
            G +D A  IF+                            E  +  C+    PD  TY T
Sbjct: 481 YGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNT 540

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +I+GLC    + EA +LF++M+     P   TY +LI    +      +  L +EMRS G
Sbjct: 541 MISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSG 600

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              +  T S + + L  G      + +L
Sbjct: 601 FVGDASTISLVTNMLHDGRLDKSFLNML 628


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 223/438 (50%), Gaps = 12/438 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE-DIFLSICRGYGRVHRP 101
            N F H  S    +IS  + + QF  +  LL  + + +   T+  ++  I   Y +    
Sbjct: 52  GNLFSHAQSLLLQVISGKIHS-QFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSL 110

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             ++  F++M + G  P    +  +L  +V  +     + F+   +   +   V S  +L
Sbjct: 111 NLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLD-VYSFGIL 169

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IK  C+ +G ++ +F +  E+   G +P+   Y TLI+G C+ G+I +AK+LF EM    
Sbjct: 170 IKGCCE-AGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLG 228

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
                 TYT LINGL ++   ++   ++E+M+  GV PN++TY+ +M+ LCK G +  A 
Sbjct: 229 LVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAF 288

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++   M  +    NIVTY+TL+ GLC+E KL EA +++D+MK  G+ P+   Y  +I  F
Sbjct: 289 QVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGF 348

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRN 400
           C +GK  +A +   ++   G++P+ +T+       N +V G C K D + A ++   M  
Sbjct: 349 CGVGKLGKALSLCRDLKSRGLSPSLVTY-------NILVSGFCRKGDTSGAAKMVKEMEE 401

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I    +TY+ LI  F +  ++ K+ ++   +   G +PD  T+S ++     + +M +
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNE 461

Query: 461 AAELLLLELMNKCVEAEV 478
           A+ L    +   C   EV
Sbjct: 462 ASRLFKSMVEKNCEPNEV 479



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 209/407 (51%), Gaps = 9/407 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  +F ++I     A +   + DLL  + +        I+ ++  G  +      A  +F
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M + G     ++Y  ++  L +    K  F  Y  M+E G+ P + + N ++  LCK+
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKD 281

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
             T DA F++F EM  RG + +  TY TLI GLCR  K+ EA ++  +M++   +P ++T
Sbjct: 282 GRTKDA-FQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLIT 340

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI+G C    + +A+ L  +++S+G+ P++ TY+ L+ G C+ G +S A ++++ M 
Sbjct: 341 YNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEME 400

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +  +P+ VTY+ L++   +   +++A+++   M+  GL PD   Y  +I  FC  G+  
Sbjct: 401 ERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMN 460

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDS 407
           EA+     MV     PN +       I+NT++ G CK   + RA ++   M  + ++ + 
Sbjct: 461 EASRLFKSMVEKNCEPNEV-------IYNTMILGYCKEGSSYRALKLLKEMEEKELAPNV 513

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            +Y  +I   CK+    ++ R+V++++  G  P     S +  A  D
Sbjct: 514 ASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRAKND 560



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 169/367 (46%), Gaps = 34/367 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +   ++ +I       +   A+DL   + K      E  +  +  G  +       
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +++KM+E G  P   +Y  V+  L ++ + K AF+ +  MRE G+   + + N LI  
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312

Query: 165 LCK----------------------------------NSGTMDAAFKIFREMPNRGCTPD 190
           LC+                                    G +  A  + R++ +RG +P 
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             TY  L++G CR G    A ++ KEME +   P+ VTYT LI+   +S ++E+A++L  
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            M   G+ P+V TYS L+ G C  G  ++A  L + M+ K   PN V Y+T++ G CKEG
Sbjct: 433 SMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEG 492

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
               A+++L  M+ + L P+   Y  +I   C   K +EA   +++M+  GI P+    S
Sbjct: 493 SSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILS 552

Query: 371 LHIRIHN 377
           L  R  N
Sbjct: 553 LISRAKN 559


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 220/432 (50%), Gaps = 12/432 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNK-EKCDITEDIFLSICRGYGRVHRP 101
            N + H  S    +IS  + + QF  +  LL  V + E  +    ++  +   Y +    
Sbjct: 52  GNLYSHAQSLLLQVISGKIQS-QFFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSL 110

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             ++  F++M + G  P    +  +L  +V  +     +RF+   + I +   V S  ++
Sbjct: 111 DSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESK-IKVDLDVYSFGIV 169

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IK  C+ +G ++ +F +  E+   G +P+   Y TLI+G C+ G+I +AK+LF EM    
Sbjct: 170 IKGCCE-AGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFG 228

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
                 TYT LI+GL ++   ++   ++E+M+  GV PN++TY+ +M+  CK G +  A 
Sbjct: 229 LVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAF 288

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +L   M  +    NIVTY+TL+ GLC+E K  EA +++D+MK  G+ P+   Y  +I  F
Sbjct: 289 KLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGF 348

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C +GK  +A +   ++   G++P+ +T+       N +V G CK  D + A +V   M  
Sbjct: 349 CGVGKLGKALSLCRDLKSRGLSPSLVTY-------NILVSGFCKKGDTSGAGKVVKEMEE 401

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R I    +TY+ LI  F +  ++ K+ ++   +   G  PD  T+S ++     + +M +
Sbjct: 402 RGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNE 461

Query: 461 AAELLLLELMNK 472
           A+ L  L +  K
Sbjct: 462 ASRLFKLMVAKK 473



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 209/407 (51%), Gaps = 9/407 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  +F ++I     A +   + DLL  + +        I+ ++  G  +      A  +F
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF 221

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M +FG      +Y  ++  L +    K  F  Y  M+E G+ P + + N ++   CK+
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKD 281

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
             T DA FK+F EM  RG + +  TY TLI GLCR  K  EA ++  +M++   +P ++T
Sbjct: 282 GRTKDA-FKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLIT 340

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI+G C    + +A+ L  +++S+G+ P++ TY+ L+ G CK G +S A ++++ M 
Sbjct: 341 YNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEME 400

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +  +P+ +TY+ L++   +   +++A+++   M+  GL PD   Y  +I  FC  G+  
Sbjct: 401 ERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMN 460

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDS 407
           EA+     MV   + PN++       I+NT+V G CK   + RA +++  M  + +  + 
Sbjct: 461 EASRLFKLMVAKKLEPNKV-------IYNTMVLGYCKEGSSYRALRLFREMEEKELPPNV 513

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            +Y  +I   CK+    ++  +V++++  G  P +   + +  A  D
Sbjct: 514 ASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLISRAKND 560



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 56/120 (46%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+S++I       Q   A  L   +  +K +  + I+ ++  GY +      A
Sbjct: 438 GLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRA 497

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+F +M+E    P   SY  ++ +L +E + K A      M + GI P  + LN++ +A
Sbjct: 498 LRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLISRA 557


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 202/418 (48%), Gaps = 12/418 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S++I S  +  +++ + D      +F  +   +    R   +   L+I KL+  N F   
Sbjct: 56  SSRIRSYTITSVLQEQPDTRLGFRLFIWSLKSWHLRCR---TVQDLIIGKLIKENAFELY 112

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
             +L  +      I+ + F  +   Y        A+  F  M++F C+P   ++  +L  
Sbjct: 113 WKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHF 172

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           LV +    LA   Y  M +  + P V +  +LI  LCK   T D A  +F EM +RG  P
Sbjct: 173 LVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQD-ALVLFDEMTDRGILP 231

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +   Y  +++GLC+  KI++A+ LF +M    C+  ++TY  L+NG C+S  +++A  L 
Sbjct: 232 NQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLL 291

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           + +   G    V  Y  L++GL +     +A    Q M+ +  +P+++ Y+ ++ GL +E
Sbjct: 292 QLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQE 351

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G++ EA+ +L  M  +GL+PD   Y  +I  FCD+G   EA +   E+      PN  T+
Sbjct: 352 GRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTY 411

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           S+       ++ G+CK    N+A  ++  M         +T++SLI   CK   + ++
Sbjct: 412 SI-------LICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 187/395 (47%), Gaps = 60/395 (15%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDI 87
           ALV+FD  T     G   +   +S+++S L  A +   A+ L  ++    C+   IT ++
Sbjct: 217 ALVLFDEMTDR---GILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNV 273

Query: 88  FLS-ICR------------------------GYG-------RVHRPLDAMRVFDKMKEFG 115
            L+  C+                        GYG       R  R  +A   + KM    
Sbjct: 274 LLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLREN 333

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
            +P    Y  ++  L +E ++  A      M E G++P     N LIK  C + G +D A
Sbjct: 334 IKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFC-DMGYLDEA 392

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             +  E+    C P+++TY  LI G+C+ G I +A+ +FKEME   C P+VVT+ SLING
Sbjct: 393 ESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLING 452

Query: 236 LCQSKSVEEAMRLFEEMR-----------SKGVEPNVFTYSSL---MDGLCKGGCSSQAM 281
           LC++  +EEA  LF +M            S+G +  VF  +SL   M+ LC+ G   +A 
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTD-KVFDIASLQVMMERLCESGMILKAY 511

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +LL  ++     P+I TY+ L+NG CK G +  A ++   M+L+G  PD+  YG +I   
Sbjct: 512 KLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGL 571

Query: 342 CDIGKYQEAANFLDEMVLGGITPNR------LTWS 370
              G+ ++A    ++MV  G  P        +TWS
Sbjct: 572 YRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWS 606



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 208/461 (45%), Gaps = 65/461 (14%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D   F+L++  LV    F  A  + +++   KC++  D+  +  +  G  +  +  DA+ 
Sbjct: 162 DLFAFNLILHFLVRKEAFLLALAVYNQM--LKCNLNPDVVTYGILIHGLCKTCKTQDALV 219

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +FD+M + G  P    Y  VL+ L +  ++  A R +  MR  G    + + NVL+   C
Sbjct: 220 LFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFC 279

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K SG +D AF + + +   G       YG LINGL R  +  EA   +++M  +   P V
Sbjct: 280 K-SGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDV 338

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           + YT +I GL Q   V EA+ L  EM  +G+ P+   Y++L+ G C  G   +A E L++
Sbjct: 339 MLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA-ESLRL 397

Query: 287 MISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            ISK    PN  TYS L+ G+CK G + +A  I   M+  G  P    +  +I+  C   
Sbjct: 398 EISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKAN 457

Query: 346 KYQEA------------------------------------------------ANFLDEM 357
           + +EA                                                   L ++
Sbjct: 458 RLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQL 517

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
           V  G+ P+       IR +N ++ G CK  + N AF+++  M+ +    DS+TY +LI  
Sbjct: 518 VDSGVLPD-------IRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDG 570

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
             + G    +  I +++V  GC+P+  T+  +MT  W  R+
Sbjct: 571 LYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMT--WSCRE 609



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 139/277 (50%), Gaps = 27/277 (9%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--- 81
           E  V +AL +    T     G R D   ++ +I           AE L   ++K  C   
Sbjct: 351 EGRVTEALTLLGEMTER---GLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPN 407

Query: 82  DITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           + T  I +  +C+  G +++   A  +F +M++ GC P+  ++ +++  L + N+L+ A 
Sbjct: 408 NHTYSILICGMCKN-GLINK---AQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEAR 463

Query: 141 RFYRHMREIGIQPC--------------VASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
             +  M EI  +P               +ASL V+++ LC+ SG +  A+K+  ++ + G
Sbjct: 464 LLFYQM-EIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCE-SGMILKAYKLLMQLVDSG 521

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             PD  TY  LING C+ G I  A +LFKEM+ K   P  VTY +LI+GL ++   E+A+
Sbjct: 522 VLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDAL 581

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            +FE+M  KG  P   TY ++M   C+    S A+ +
Sbjct: 582 EIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSV 618



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 137/314 (43%), Gaps = 49/314 (15%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           +  +I+ L  A ++  A     ++ +E       ++  + RG  +  R  +A+ +  +M 
Sbjct: 306 YGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMT 365

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           E G  P    Y  ++    +   L  A      + +    P   + ++LI  +CKN G +
Sbjct: 366 ERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKN-GLI 424

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET------------- 219
           + A  IF+EM   GC P   T+ +LINGLC+  ++ EA+ LF +ME              
Sbjct: 425 NKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQG 484

Query: 220 ---------------KACS--------------------PTVVTYTSLINGLCQSKSVEE 244
                          + C                     P + TY  LING C+  ++  
Sbjct: 485 TDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNING 544

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A +LF+EM+ KG  P+  TY +L+DGL + G +  A+E+ + M+ K   P   TY T++ 
Sbjct: 545 AFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMT 604

Query: 305 GLCKEGKLQEAVEI 318
             C+E  +  A+ +
Sbjct: 605 WSCRENNISLALSV 618



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 168/405 (41%), Gaps = 66/405 (16%)

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           +SY T+ ++L E+   +L FR +    +     C    +++I  L K +   +  +K+ +
Sbjct: 60  RSY-TITSVLQEQPDTRLGFRLFIWSLKSWHLRCRTVQDLIIGKLIKENA-FELYWKVLQ 117

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           E+ N      S  +  LI      G   +A E F  M    C P +  +  +++ L + +
Sbjct: 118 ELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLVRKE 177

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
           +   A+ ++ +M    + P+V TY  L+ GLCK   +  A+ L   M  +   PN + YS
Sbjct: 178 AFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYS 237

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG--------------- 345
            +L+GLC+  K+ +A  +  +M+  G   D   Y  +++ FC  G               
Sbjct: 238 IVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKD 297

Query: 346 --------------------KYQEAANFLDEMVLGGITPNRLTWSLHIR----------- 374
                               +Y+EA  +  +M+   I P+ + +++ IR           
Sbjct: 298 GHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEA 357

Query: 375 -----------------IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
                             +N +++G C     + A  + L +       ++ TYS LI  
Sbjct: 358 LTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICG 417

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            CK G I+K+  I  E+   GCLP   T+++++  L    ++ +A
Sbjct: 418 MCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 20/221 (9%)

Query: 47  RHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           +HD    N T+S++I  +        A+ +   + K  C  +   F S+  G  + +R  
Sbjct: 401 KHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLE 460

Query: 103 DAMRVFDKMKEFGCEP---------TPKSY-ITVLAILVE---ENQLKL-AFRFYRHMRE 148
           +A  +F +M E   +P         T K + I  L +++E   E+ + L A++    + +
Sbjct: 461 EARLLFYQM-EIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVD 519

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G+ P + + N+LI   CK  G ++ AFK+F+EM  +G  PDS TYGTLI+GL R G+  
Sbjct: 520 SGVLPDIRTYNILINGFCK-FGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNE 578

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +A E+F++M  K C P   TY +++   C+  ++  A+ ++
Sbjct: 579 DALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVW 619


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 198/372 (53%), Gaps = 13/372 (3%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPLDA 104
           R +  T++ +I+   +  + + A +++ R  +E+  I  D   + ++  G+ ++ R  DA
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVM-REMRERGGIAPDKYTYATLISGWCKIGRMEDA 202

Query: 105 MRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           ++VFD+M   G   P+   Y  ++    +  +L +A ++   M + GI   VA+ N+L+ 
Sbjct: 203 VKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMH 262

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL  ++   DA + +  EM   G +PD +TY  LING C+ G   +A E+F+EM  K   
Sbjct: 263 ALFMDARASDA-YAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVR 321

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            T VTYTSLI    +   V+E  RLF     KG+ P+V  Y++L++  C GG   +A E+
Sbjct: 322 ATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEI 381

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M  KR  P+ +TY+TL+ G C  G+L EA  ++D M  +G++PD   Y  +IS +  
Sbjct: 382 MAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSM 441

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G  ++A    DEM+  G  P  +T+       N ++QGLCK    + A  +   M  + 
Sbjct: 442 KGDIKDALRVRDEMMDKGFNPTLMTY-------NALIQGLCKIRQGDDAENLMKEMVAKG 494

Query: 403 ISVDSLTYSSLI 414
           I+ D  TY SLI
Sbjct: 495 ITPDDSTYISLI 506



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 215/434 (49%), Gaps = 28/434 (6%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           ++   ++S L SA  F    D+  R+    C  T +I L      G+  R L+ +R   +
Sbjct: 86  ASLHPLLSSLPSAPAFALFADIY-RLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR 144

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIKALCKNS 169
                  P   +Y TV+A      +++ A    R MRE G I P   +   LI   CK  
Sbjct: 145 -------PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCK-I 196

Query: 170 GTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           G M+ A K+F EM  +G   P +  Y  LI G C +GK+  A +  ++M  +  + TV T
Sbjct: 197 GRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVAT 256

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  L++ L       +A  + EEM+  G  P+VFTY+ L++G CK G   +A+E+ + M 
Sbjct: 257 YNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMS 316

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K  R   VTY++L+    ++G++QE   + +    +G++PD  +Y  +I+  C  G  +
Sbjct: 317 QKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDME 376

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC---KTDPNRAFQVYLSMRNRSISV 405
            A   + EM    I P+ +T+       NT+++G C   + D  R   +   M  R I  
Sbjct: 377 RAYEIMAEMEKKRIPPDDMTY-------NTLMRGFCLLGRLDEART--LIDEMTKRGIQP 427

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA--AE 463
           D ++Y++LI+ +  KGDI  + R+ DE++  G  P   T++A++  L    K+RQ   AE
Sbjct: 428 DLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLC---KIRQGDDAE 484

Query: 464 LLLLELMNKCVEAE 477
            L+ E++ K +  +
Sbjct: 485 NLMKEMVAKGITPD 498



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 198/406 (48%), Gaps = 15/406 (3%)

Query: 50  NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109
            +TF++M+  L +  +   A +LL ++ +        +    C   GRV   L+ MR   
Sbjct: 116 TTTFNIMLRHLCATGKPVRALELLRQMPRPNAVTYNTVIAGFC-ARGRVQAALEVMR--- 171

Query: 110 KMKE-FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIKALCK 167
           +M+E  G  P   +Y T+++   +  +++ A + +  M   G + P     N LI   C 
Sbjct: 172 EMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYC- 230

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           + G +D A +   +M  RG      TY  L++ L    +  +A  + +EM+    SP V 
Sbjct: 231 DVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVF 290

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY  LING C+  + ++A+ +FEEM  KGV     TY+SL+    + G   +   L  + 
Sbjct: 291 TYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVA 350

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           + K  RP++V Y+ L+N  C  G ++ A EI+  M+ + + PD   Y  ++  FC +G+ 
Sbjct: 351 VKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRL 410

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVD 406
            EA   +DEM   GI P+ +++       NT++ G   K D   A +V   M ++  +  
Sbjct: 411 DEARTLIDEMTKRGIQPDLVSY-------NTLISGYSMKGDIKDALRVRDEMMDKGFNPT 463

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            +TY++LI   CK      +  ++ E+V  G  PD+ T+ +++  L
Sbjct: 464 LMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 163/330 (49%), Gaps = 19/330 (5%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           + R Y  ++ + +   VASL+ L+ +L         AF +F ++        + T+  ++
Sbjct: 69  SLRLYAQLKSLSVPIPVASLHPLLSSLPSAP-----AFALFADIYRLRLPLCTTTFNIML 123

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-V 257
             LC  GK   A EL ++M      P  VTY ++I G C    V+ A+ +  EMR +G +
Sbjct: 124 RHLCATGKPVRALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGI 179

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAV 316
            P+ +TY++L+ G CK G    A+++   M++K    P+ V Y+ L+ G C  GKL  A+
Sbjct: 180 APDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVAL 239

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           +  + M  +G+      Y  ++       +  +A   L+EM   G +P+  T+       
Sbjct: 240 QYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTY------- 292

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N ++ G CK  +  +A +V+  M  + +   ++TY+SLI  F +KG + ++ R+ +  V 
Sbjct: 293 NILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVK 352

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G  PD   ++A++ +      M +A E++
Sbjct: 353 KGIRPDVVMYNALINSHCTGGDMERAYEIM 382



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 138/261 (52%), Gaps = 5/261 (1%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVF 108
           +T++L++  L    +   A  +L+ + K     + D+F    +  GY +      A+ VF
Sbjct: 255 ATYNLLMHALFMDARASDAYAVLEEMQKN--GFSPDVFTYNILINGYCKEGNEKKALEVF 312

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           ++M + G   T  +Y +++ +   + Q++   R +    + GI+P V   N LI + C  
Sbjct: 313 EEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHC-T 371

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G M+ A++I  EM  +   PD  TY TL+ G C LG++ EA+ L  EM  +   P +V+
Sbjct: 372 GGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVS 431

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI+G      +++A+R+ +EM  KG  P + TY++L+ GLCK      A  L++ M+
Sbjct: 432 YNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMV 491

Query: 289 SKRHRPNIVTYSTLLNGLCKE 309
           +K   P+  TY +L+ GL  E
Sbjct: 492 AKGITPDDSTYISLIEGLTTE 512


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 189/392 (48%), Gaps = 30/392 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+  F++M      P+   +  +L  + +           R M   GI P V +L ++I
Sbjct: 53  EALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVI 112

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            +LC +   +D AF    ++   G  PD+ T+ TLI GLC  GKI EA  LF +M  +  
Sbjct: 113 NSLC-HLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGF 171

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY +LINGLC+  +   A+RL   M     +PNV  +S+L+D LCK    ++A  
Sbjct: 172 QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFN 231

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   MI+K   PNIVTY++L++GLCK  + +    +++ M    + PD      ++   C
Sbjct: 232 IFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALC 291

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH-------------------------- 376
             G   EA + +D M+  G+ PN +T++  +  H                          
Sbjct: 292 KEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVI 351

Query: 377 --NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
             NT++ G CK    ++A  ++  M  + ++ +++TY++LI   C  G +  +  +  E+
Sbjct: 352 SYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEM 411

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V  G +PD  T+  +   L   R + +A  LL
Sbjct: 412 VARGQIPDLVTYRTLSDYLCKNRHLDKAMALL 443



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 211/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ +I  L    +   A  L D++  E        + ++  G  +V     A
Sbjct: 135 GHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAA 194

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M++  C+P    + T++  L ++ Q+  AF  +  M   GI P + + N LI  
Sbjct: 195 IRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHG 254

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK          +  EM +    PD +T  T+++ LC+ G + EA ++   M  +   P
Sbjct: 255 LCKLC-EWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEP 313

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +L++G C    V+ A+++F+ M  K    NV +Y++L++G CK     +AM L 
Sbjct: 314 NVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLF 373

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +   PN VTY+TL++GLC  G+LQ+A+ +   M  +G  PD   Y  +    C  
Sbjct: 374 EEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK- 432

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
            ++ + A  L + + G        W   I+I+ T++ G+C+  +   A  ++ ++ ++ +
Sbjct: 433 NRHLDKAMALLKAIEGS------NWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGL 486

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TY+ +I   CK+G + +++++  E+  +GC P++ T++ +        +  +  E
Sbjct: 487 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIE 546

Query: 464 LL 465
           LL
Sbjct: 547 LL 548



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 201/439 (45%), Gaps = 48/439 (10%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIR    E  + +AL +FD    E   GF+ +  T+  +I+ L        A  LL  + 
Sbjct: 146 LIRGLCVEGKIGEALHLFDKMIGE---GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 202

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +  C     +F ++     +  +  +A  +F +M   G  P   +Y +++  L +  + K
Sbjct: 203 QGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK 262

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNS---------------------------- 169
                   M +  I P V +LN ++ ALCK                              
Sbjct: 263 HVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALM 322

Query: 170 ------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
                   +D A K+F  M ++ C  +  +Y TLING C++  + +A  LF+EM  +  +
Sbjct: 323 DGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT 382

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY +LI+GLC    +++A+ LF EM ++G  P++ TY +L D LCK     +AM L
Sbjct: 383 PNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMAL 442

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ +      P+I  Y+T+L+G+C+ G+L++A ++   +  +GL+P+   Y  +I   C 
Sbjct: 443 LKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 502

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRS 402
            G   EA+    EM   G +PN  T++L       + +G  + +   R  ++   M  R 
Sbjct: 503 QGLLAEASKLFSEMNKNGCSPNDCTYNL-------ITRGFLRNNEALRTIELLEEMLARG 555

Query: 403 ISVDSLTYSSLITCFCKKG 421
            SVD  T + L+      G
Sbjct: 556 FSVDVSTTTLLVGMLSDDG 574



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 150/305 (49%), Gaps = 8/305 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T+D A   F  M ++   P +  +  L+  + +         L ++M++    P V T  
Sbjct: 50  TLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLA 109

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            +IN LC    V+ A     ++   G +P+  T+++L+ GLC  G   +A+ L   MI +
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN+VTY TL+NGLCK G    A+ +L  M+    +P+  ++  +I   C   +  EA
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
            N   EM+  GI+PN +T+       N+++ GLCK    +     ++ M +  I  D  T
Sbjct: 230 FNIFSEMITKGISPNIVTY-------NSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
            ++++   CK+G + ++  +VD ++  G  P+  T++A+M     R ++  A ++    +
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342

Query: 470 MNKCV 474
              CV
Sbjct: 343 HKDCV 347



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 1/251 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A++VFD M    C     SY T++    +   +  A   +  M    + P   + N LI 
Sbjct: 334 AVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIH 393

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC + G +  A  +F EM  RG  PD  TY TL + LC+   + +A  L K +E     
Sbjct: 394 GLC-HVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWD 452

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P +  YT++++G+C++  +E+A  LF  + SKG++PNV+TY+ ++ GLCK G  ++A +L
Sbjct: 453 PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 512

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M      PN  TY+ +  G  +  +    +E+L+ M  +G   D      ++    D
Sbjct: 513 FSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 572

Query: 344 IGKYQEAANFL 354
            G  Q     L
Sbjct: 573 DGLDQSVKQIL 583


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 213/410 (51%), Gaps = 9/410 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG  HD+ ++++++  L  A     A    D + K   +     + ++ +G+  +     
Sbjct: 300 NGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSG 359

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A +V  KM   G  P   +Y T++    +   ++ A +  +     G +  V   N+L+ 
Sbjct: 360 ARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLS 419

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G ++ A  +F EM      PD   Y  LI+GLC+ G +  A +L+++M  K   
Sbjct: 420 CLCK-VGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKF 478

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P      +++ GL ++ ++ EA   F+      +  +V  Y+ ++DG  +    ++AM+L
Sbjct: 479 PHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQL 538

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI +   P++VT++TL+NG C+ G L EA ++L+ ++L+GL P    Y  +++ +C+
Sbjct: 539 YYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCE 598

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
           +G  QE  +FL EM    + P  +T+++       +++GLC+ +  + + Q+   M  + 
Sbjct: 599 VGNMQEMFHFLHEMEANAVVPTHVTYTV-------LIKGLCRQNKMHESLQLLEYMYAKG 651

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +  DS+TY+++I CFCK  +I K+ ++ + ++L  C P + T+  ++ AL
Sbjct: 652 LLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINAL 701



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 191/374 (51%), Gaps = 9/374 (2%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +V R  +A+ +FD+M+    EP    Y  ++  L +E  ++ A++ Y  MR     P   
Sbjct: 423 KVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHF 482

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           +   ++  L KN G +  A   F          D   Y  +I+G  RL  I EA +L+ +
Sbjct: 483 AQRAVLLGLFKN-GNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYK 541

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +  +P+VVT+ +LING C+   + EA ++ E +R KG+ P+V TY++LM+  C+ G 
Sbjct: 542 MIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGN 601

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +    L  M +    P  VTY+ L+ GLC++ K+ E++++L+ M  +GL PD+  Y  
Sbjct: 602 MQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNT 661

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVY 395
           II CFC   +  +A    + M+L    P ++T+ +       ++  LC   D     ++ 
Sbjct: 662 IIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKV-------LINALCIFGDLKDVDRMV 714

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           +S+ +R+I++   TY ++I   C KG + K+    ++++  G +     +SAV+  L  R
Sbjct: 715 VSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKR 774

Query: 456 RKMRQAAELLLLEL 469
             + +A    ++ L
Sbjct: 775 GLITEAKYFFVMML 788



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 197/396 (49%), Gaps = 32/396 (8%)

Query: 100 RPLDAM-RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           R  D M  V++++K  G   +  +   ++  L E+++L+ A  F     ++ + P + S+
Sbjct: 216 RHTDIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDSNKV-VGPSIVSI 274

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N ++   CK  G +D A   F  M   G   DS++Y  L++GLC  G + EA     +ME
Sbjct: 275 NTIMSKFCK-VGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDME 333

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P VVTY +L  G      +  A ++ ++M  +G+ P++ TY++L+ G C+ G   
Sbjct: 334 KHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIE 393

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A++L Q  +S+  + N++ Y+ LL+ LCK G+++EA+ + D M+   L+PD  +Y  +I
Sbjct: 394 EALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILI 453

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRL-----------------------TWSL---- 371
              C  G  Q A    ++M L    P+                         TW+     
Sbjct: 454 HGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLM 513

Query: 372 -HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
             + ++N ++ G  + D    A Q+Y  M  R I+   +T+++LI  FC++GD+ ++ ++
Sbjct: 514 EDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKM 573

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ + L G +P   T++ +M A  +   M++    L
Sbjct: 574 LEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFL 609



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 173/345 (50%), Gaps = 9/345 (2%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           SY  +L  L     +  A  F   M + G++P V + N L K      G M  A K+ ++
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLL-LGLMSGARKVVQK 366

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M  +G  PD  TY TLI G C++G I EA +L +E  ++     V+ Y  L++ LC+   
Sbjct: 367 MLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGR 426

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           +EEA+ LF+EM +  +EP+   YS L+ GLCK G   +A +L + M  KR  P+      
Sbjct: 427 IEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRA 486

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           +L GL K G + EA    D      L  D  LY  +I  +  +    EA     +M+  G
Sbjct: 487 VLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERG 546

Query: 362 ITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           ITP+ +T+       NT++ G C + D   A ++   +R + +    +TY++L+  +C+ 
Sbjct: 547 ITPSVVTF-------NTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEV 599

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G++ +    + E+  +  +P   T++ ++  L  + KM ++ +LL
Sbjct: 600 GNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLL 644



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 153/342 (44%), Gaps = 60/342 (17%)

Query: 138 LAFRFYRH------------MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           LAF + RH            M+++  Q  V + N    +L  N    D  + ++ E+   
Sbjct: 176 LAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYN----SLLHNMRHTDIMWDVYNEIKVS 231

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV------------------ 227
           G      T   LI+GLC   K+ +A     +   K   P++V                  
Sbjct: 232 GAPQSECTTSILIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTIMSKFCKVGLIDVA 290

Query: 228 -----------------TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
                            +Y  L++GLC + S++EA+   ++M   GVEP+V TY++L  G
Sbjct: 291 RSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKG 350

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
               G  S A +++Q M+ +   P++VTY+TL+ G C+ G ++EA+++      +G K +
Sbjct: 351 FLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLN 410

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PN 389
              Y  ++SC C +G+ +EA    DEM    + P+ + +S+       ++ GLCK     
Sbjct: 411 VIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSI-------LIHGLCKEGFVQ 463

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           RA+Q+Y  MR +          +++    K G+I ++    D
Sbjct: 464 RAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFD 505



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 144/317 (45%), Gaps = 1/317 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D   +++MI   V  +    A  L  ++ +     +   F ++  G+ R    ++A ++ 
Sbjct: 515 DVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKML 574

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + ++  G  P+  +Y T++    E   ++  F F   M    + P   +  VLIK LC+ 
Sbjct: 575 EVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQ 634

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +  M  + ++   M  +G  PDS TY T+I   C+  +I +A +L+  M    C PT VT
Sbjct: 635 N-KMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVT 693

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  LIN LC    +++  R+   +  + +     TY +++   C  G  S+A+     M+
Sbjct: 694 YKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQML 753

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +K    +I  YS ++N LCK G + EA      M  +G+ PD  +   +++ F   G   
Sbjct: 754 AKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNS 813

Query: 349 EAANFLDEMVLGGITPN 365
               FL  +V  G   +
Sbjct: 814 SVFEFLAMVVKSGFISH 830



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 36/197 (18%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           YA G   D+ T++ +I                      +C          C+G       
Sbjct: 648 YAKGLLPDSVTYNTII----------------------QC---------FCKG----KEI 672

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A+++++ M    C+PT  +Y  ++  L     LK   R    + +  I     +   +
Sbjct: 673 TKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTI 732

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           IKA C   G +  A   F +M  +G       Y  +IN LC+ G I EAK  F  M ++ 
Sbjct: 733 IKAHCA-KGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEG 791

Query: 222 CSPTVVTYTSLINGLCQ 238
            +P      +++N   Q
Sbjct: 792 VTPDPEICKTVLNAFHQ 808


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 177/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            +LF+EM  K + PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GL+PD   Y  +I   C  G    A      M+   I  +
Sbjct: 292 LCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 352 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPDARTYTMIINEFCKKG 401

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG +P   T++ +M  
Sbjct: 402 DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 157/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +  MD A K+F EM  +   P+  T+ TLI+G C+ G++  A E++K+M +++  
Sbjct: 221 GLCKEN-KMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 340 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 427



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 204/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRK-------------GKG------SAS 55

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 56  AVFAAILE--TKGTQRSDIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKV 113

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 114 LEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKM 228

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A +L   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 229 DDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D + AF+   
Sbjct: 289 IYGLCKKGDLKQANDLIDEMSMKGLQPDKITYT-------TLIDGCCKEGDLDTAFEHRK 341

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD  T++ ++     + 
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKG 401

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 402 DVWKGSKLL 410



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 147/287 (51%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +EN++  A + +  M    + P   +   LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TLI GLC+ G + +A +L  EM  K   P  +TYT+L
Sbjct: 264 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 200/372 (53%), Gaps = 13/372 (3%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPLDA 104
           R +  T++ +I+   S  + + A D++ R  +E+  I  +   + ++  G+ +V R  +A
Sbjct: 69  RPNAVTYNTVIAGFCSRGRVQAALDIM-REMRERGGIAPNQYTYGTVISGWCKVGRVDEA 127

Query: 105 MRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           ++VFD+M   G  +P    Y  ++    ++ +L  A  +   M E G+   VA+ N+L+ 
Sbjct: 128 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 187

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL  + G    A+++  EM  +G  PD +TY  LING C+ G + +A E+F+ M  +   
Sbjct: 188 ALFMD-GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR 246

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            TVVTYTSLI  L +   V+E  +LF+E   +G+ P++  Y++L++     G   +A E+
Sbjct: 247 ATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEI 306

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M  KR  P+ VTY+TL+ GLC  G++ EA +++D M  +G++PD   Y  +IS +  
Sbjct: 307 MGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSM 366

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G  ++A    +EM+  G  P  LT+       N ++QGLCK    + A  +   M    
Sbjct: 367 KGDVKDALRIRNEMMNKGFNPTLLTY-------NALIQGLCKNGQGDDAENMVKEMVENG 419

Query: 403 ISVDSLTYSSLI 414
           I+ D  TY SLI
Sbjct: 420 ITPDDSTYISLI 431



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/422 (30%), Positives = 207/422 (49%), Gaps = 19/422 (4%)

Query: 38  ATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           A A +A+ FR       +TF++M+  L SA +   A +LL ++ +        +    C 
Sbjct: 25  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFC- 83

Query: 94  GYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-I 151
             GRV   LD MR   +M+E  G  P   +Y TV++   +  ++  A + +  M   G +
Sbjct: 84  SRGRVQAALDIMR---EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 140

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P     N LI   C + G +D A      M  RG      TY  L++ L   G+  EA 
Sbjct: 141 KPEAVMYNALIGGYC-DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 199

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           EL +EM  K  +P V TY  LING C+  +V++A+ +FE M  +GV   V TY+SL+  L
Sbjct: 200 ELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYAL 259

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
            K G   +  +L    + +  RP++V Y+ L+N     G +  A EI+  M+ + + PD 
Sbjct: 260 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 319

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNR 390
             Y  ++   C +G+  EA   +DEM   GI P+ +T+       NT++ G   K D   
Sbjct: 320 VTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTY-------NTLISGYSMKGDVKD 372

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A ++   M N+  +   LTY++LI   CK G    +  +V E+V +G  PD+ T+ +++ 
Sbjct: 373 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 432

Query: 451 AL 452
            L
Sbjct: 433 GL 434



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 175/323 (54%), Gaps = 10/323 (3%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEA 210
           +P   + N +I   C + G + AA  I REM  RG   P+ YTYGT+I+G C++G++ EA
Sbjct: 69  RPNAVTYNTVIAGFC-SRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 127

Query: 211 KELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            ++F EM TK    P  V Y +LI G C    ++ A+   + M  +GV   V TY+ L+ 
Sbjct: 128 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 187

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            L   G  ++A EL++ M  K   P++ TY+ L+NG CKEG +++A+EI + M  +G++ 
Sbjct: 188 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 247

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
               Y  +I      G+ QE     DE V  GI P+ + ++  I  H+T        + +
Sbjct: 248 TVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHST------SGNID 301

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           RAF++   M  + I+ D +TY++L+   C  G + ++ +++DE+   G  PD  T++ ++
Sbjct: 302 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLI 361

Query: 450 TALWDRRKMRQAAELLLLELMNK 472
           +    +  ++ A   +  E+MNK
Sbjct: 362 SGYSMKGDVKDALR-IRNEMMNK 383



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 138/261 (52%), Gaps = 5/261 (1%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVF 108
           +T++L++  L    +   A +L++ +  +   +  D+F    +  G+ +      A+ +F
Sbjct: 180 ATYNLLVHALFMDGRGTEAYELVEEMGGKG--LAPDVFTYNILINGHCKEGNVKKALEIF 237

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M   G   T  +Y +++  L ++ Q++   + +      GI+P +   N LI +    
Sbjct: 238 ENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS-HST 296

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG +D AF+I  EM  +   PD  TY TL+ GLC LG++ EA++L  EM  +   P +VT
Sbjct: 297 SGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVT 356

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI+G      V++A+R+  EM +KG  P + TY++L+ GLCK G    A  +++ M+
Sbjct: 357 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMV 416

Query: 289 SKRHRPNIVTYSTLLNGLCKE 309
                P+  TY +L+ GL  E
Sbjct: 417 ENGITPDDSTYISLIEGLTTE 437



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 4/192 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           +T +T   ++  +  +  V +   +FD A      G R D   ++ +I+   ++     A
Sbjct: 247 ATVVTYTSLIYALSKKGQVQETDKLFDEAVRR---GIRPDLVLYNALINSHSTSGNIDRA 303

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
            +++  + K++    +  + ++ RG   + R  +A ++ D+M + G +P   +Y T+++ 
Sbjct: 304 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISG 363

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
              +  +K A R    M   G  P + + N LI+ LCKN G  D A  + +EM   G TP
Sbjct: 364 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN-GQGDDAENMVKEMVENGITP 422

Query: 190 DSYTYGTLINGL 201
           D  TY +LI GL
Sbjct: 423 DDSTYISLIEGL 434



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 14/192 (7%)

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
           S+ A  L   M   R      T++ +L  LC  GK   A+E+L +M     +P+A  Y  
Sbjct: 22  SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNT 77

Query: 337 IISCFCDIGKYQEAANFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQV 394
           +I+ FC  G+ Q A + + EM   GGI PN+ T+        TV+ G CK    + A +V
Sbjct: 78  VIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYG-------TVISGWCKVGRVDEAVKV 130

Query: 395 YLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +  M  +  +  +++ Y++LI  +C +G +  +    D +V  G      T++ ++ AL+
Sbjct: 131 FDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALF 190

Query: 454 DRRKMRQAAELL 465
              +  +A EL+
Sbjct: 191 MDGRGTEAYELV 202


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 186/373 (49%), Gaps = 9/373 (2%)

Query: 55  LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114
           L+   L++ N        L+ +      +  D F  + + Y ++     AM  F  M++F
Sbjct: 96  LITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDF 155

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
            C P   +Y  +L +L+++N L LA   Y  M ++   P VA+ ++LI  LCK SG +  
Sbjct: 156 DCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCK-SGNVKD 214

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A  +F EM  RG  PD++TY  +I+GLCR  ++ +A  LF +M+     P  VT  +L+N
Sbjct: 215 ALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLN 274

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G C    V+EA  L       G   +V  YS L+ GL +         L + MI    +P
Sbjct: 275 GFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKP 334

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++  Y+ ++ GL + GK+++A+E+L+ M   G+ PD   Y  +I  FCD+G   EA +  
Sbjct: 335 DVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQ 394

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSL 413
            E+      PN  T+S+       ++ G+C+    R A +++  M        ++T++SL
Sbjct: 395 LEISRHDCFPNVKTYSI-------LISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSL 447

Query: 414 ITCFCKKGDIHKS 426
           I   CK G + K+
Sbjct: 448 IDGLCKTGQLEKA 460



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 200/436 (45%), Gaps = 24/436 (5%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           +TFS++I  L  +   + A  L D + +         +  +  G  R  R  DA R+FDK
Sbjct: 197 ATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDK 256

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           MK+ G  P   +   +L      +++  AF   R   + G    V   + LI+ L +   
Sbjct: 257 MKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKR 316

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             D    ++R+M      PD Y Y  ++ GL   GK+ +A EL  EM      P  V Y 
Sbjct: 317 YEDVQL-LYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYN 375

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LI G C    + EA  L  E+      PNV TYS L+ G+C+ G +  A E+   M   
Sbjct: 376 VLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKL 435

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP--------------DAGLYGK 336
              P+ VT+++L++GLCK G+L++A  +  +M++ G  P              D+    K
Sbjct: 436 GCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEI-GRNPSLFLRLSQGPSHVLDSASLQK 494

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395
           ++   CD G   +A   L ++   G  P        I  +N +V G CK  + N A++++
Sbjct: 495 MVEQLCDSGLIHKAYRILMQLADSGDAPG-------IYTYNILVNGFCKLGNFNGAYKLF 547

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M+ + +S D++TY +LI    +      + ++ D++  +GC PD   +  +MT +  R
Sbjct: 548 REMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRR 607

Query: 456 RKMRQAAELLLLELMN 471
            ++ +A  L L  L N
Sbjct: 608 MELPRAFSLWLKYLRN 623



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 116/275 (42%), Gaps = 41/275 (14%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           G +H+   A R+  ++ + G  P   +Y  ++    +      A++ +R M+  G+ P  
Sbjct: 503 GLIHK---AYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDT 559

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI-------- 207
            +   LI  L +     DA +K+F +M   GCTPD+  Y T++  +CR  ++        
Sbjct: 560 VTYGTLINGLLRFQREEDA-YKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWL 618

Query: 208 --------------------YEAKELFK------EMETKACSPTVVTYTSLINGLCQSKS 241
                               +E +E+ K      EM+ K     +  Y   + GLCQ++ 
Sbjct: 619 KYLRNIRSQEDEAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRR 678

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V EA+++F  +    V         L+  L K G   +A+++    I K +       + 
Sbjct: 679 VGEALKIFLILEEYKVVITPPCCVKLIYFLLKEGDLDRAIDVFLYTIEKGYLLRRRVANR 738

Query: 302 LLNGLC-KEGKL--QEAVEILDRMKLQGLKPDAGL 333
           +L  L  ++G++    A+ +L RMK  G   DA L
Sbjct: 739 ILTKLVRRKGEMGKDRAIYLLCRMKSVGYDLDAHL 773



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 6/160 (3%)

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           L  +  L+   + L+ +K  G+K     +  +I  +  +G   +A      M     TP+
Sbjct: 101 LINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPD 160

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
             T+++   I + ++Q   K     A  VY  M   +   +  T+S LI   CK G++  
Sbjct: 161 VYTYNM---ILDVLIQ---KNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKD 214

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  + DE+   G LPD  T+  V++ L   +++  A  L 
Sbjct: 215 ALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLF 254


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 188/373 (50%), Gaps = 13/373 (3%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPL 102
            G   D   +S ++  L    + + A +    +  E   I+ D++   S+  G  R     
Sbjct: 1115 GILPDVVVYSSLMDGLCRFGRLKEALEFFKEM--EGRGISADVYTYNSLIHGLSRAGLWK 1172

Query: 103  DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            +     + M + G  P   ++  ++  L +E ++  A +    MR  G +P + + N L+
Sbjct: 1173 EVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLM 1232

Query: 163  KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              LC   G ++ A K+F  + +RG   + ++Y  LING C+  KI EA   F+EM  K  
Sbjct: 1233 NGLCL-VGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGL 1291

Query: 223  SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
             P+ VTY +LI  LCQS  V  A +LF EM++ G    + TY  L+DGLCK G   +AM+
Sbjct: 1292 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMD 1351

Query: 283  LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L Q +    H+PNI  +S LL+G+C+ GKL+EA +  D +   GL+PD   Y  +I+  C
Sbjct: 1352 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC 1411

Query: 343  DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
            + G   EA   L +M   G  P+ +T+       N ++Q L K +  + A Q+   MRNR
Sbjct: 1412 NKGMLSEAVKLLWQMEEKGCLPDSITF-------NVIIQNLLKENEIHEAIQLLEEMRNR 1464

Query: 402  SISVDSLTYSSLI 414
            + S D    S L+
Sbjct: 1465 NFSPDEAVTSMLL 1477



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 212/450 (47%), Gaps = 31/450 (6%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
            GF  D  T + ++  +   N    A  L D + K+        +  +  G  +  +   A
Sbjct: 1011 GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLA 1070

Query: 105  MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            +++ +KMK   C+    +Y  ++  L ++     A   +  M   GI P V   + L+  
Sbjct: 1071 IKLHEKMKG-NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDG 1129

Query: 165  LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            LC+  G +  A + F+EM  RG + D YTY +LI+GL R G   E       M  +  SP
Sbjct: 1130 LCR-FGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSP 1188

Query: 225  TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
               T+T LI+GLC+   V EA ++ E MR KG EP++ TY++LM+GLC  G    A +L 
Sbjct: 1189 DAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLF 1248

Query: 285  QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            + +  +  + N+ +Y+ L+NG CK+ K+ EA    + M+ +GLKP    Y  +I   C  
Sbjct: 1249 ESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQS 1308

Query: 345  GKYQEAANFLDEM--------------VLGGITPN--------------RLTWSLHIRIH 376
            G+ + A     EM              +L G+  N              +     +I + 
Sbjct: 1309 GRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVF 1368

Query: 377  NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            + ++ G+C+      A++ +  +    +  D++ Y+ LI   C KG + ++ +++ ++  
Sbjct: 1369 SILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEE 1428

Query: 436  DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             GCLPD  T++ ++  L    ++ +A +LL
Sbjct: 1429 KGCLPDSITFNVIIQNLLKENEIHEAIQLL 1458



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 189/364 (51%), Gaps = 9/364 (2%)

Query: 87   IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            ++ S+  G  R  R  +A+  F +M+  G      +Y +++  L      K    F   M
Sbjct: 1122 VYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLM 1181

Query: 147  REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
             + G  P   +  +LI  LCK  G +  A +I   M ++G  PD  TY TL+NGLC +G+
Sbjct: 1182 VDRGFSPDAFTFTILIDGLCKE-GKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQ 1240

Query: 207  IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
            + +A +LF+ +  +     V +Y  LING C+ + ++EA R FEEMR KG++P+  TY++
Sbjct: 1241 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNT 1300

Query: 267  LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            L+  LC+ G    A +L   M +      + TY  LL+GLCK G L+EA+++   +K   
Sbjct: 1301 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTE 1360

Query: 327  LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-K 385
             KP+  ++  ++   C  GK +EA    DE+   G+ P+ + +       N ++ GLC K
Sbjct: 1361 HKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAY-------NILINGLCNK 1413

Query: 386  TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
               + A ++   M  +    DS+T++ +I    K+ +IH++ ++++E+      PDE   
Sbjct: 1414 GMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVT 1473

Query: 446  SAVM 449
            S ++
Sbjct: 1474 SMLL 1477



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 201/434 (46%), Gaps = 80/434 (18%)

Query: 103  DAMRVFDKMKEFGCEPTP--KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            DA+++FD+      EP P   ++  +LA + +       F  YR + ++GIQP + +LN+
Sbjct: 929  DAIKLFDR--SLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNI 986

Query: 161  LIKALC----------------KNSGTMDA------------------AFKIFREMPNRG 186
            LI   C                K     DA                  A ++F EM  +G
Sbjct: 987  LIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKG 1046

Query: 187  CTPDSYTYGTLINGLCRL----------------------------------GKIYEAKE 212
               D+ TYG LINGLC+                                   G   EA +
Sbjct: 1047 LLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALD 1106

Query: 213  LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            +F EM      P VV Y+SL++GLC+   ++EA+  F+EM  +G+  +V+TY+SL+ GL 
Sbjct: 1107 MFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLS 1166

Query: 273  KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
            + G   +    L +M+ +   P+  T++ L++GLCKEGK+ EA +IL+ M+ +G +PD  
Sbjct: 1167 RAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDIL 1226

Query: 333  LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
             Y  +++  C +G+ ++A    + +   GI  N  ++       N ++ G CK    + A
Sbjct: 1227 TYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSY-------NILINGYCKDQKIDEA 1279

Query: 392  FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            F+ +  MR + +   ++TY++LI   C+ G +  + ++  E+   G      T+  ++  
Sbjct: 1280 FRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDG 1339

Query: 452  LWDRRKMRQAAELL 465
            L     + +A +L 
Sbjct: 1340 LCKNGHLEEAMDLF 1353



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 149/325 (45%), Gaps = 12/325 (3%)

Query: 148  EIGIQPCVASLNVLIKALCK-NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            +IG +  ++     ++  C+     ++ A K+F         P + T+  L+  + +LG 
Sbjct: 902  KIGTKASLSPFERYVRDQCRFGIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGY 961

Query: 207  IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
                  +++++      P + T   LI+  C  ++V     +F     +G EP+  T ++
Sbjct: 962  YSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTT 1021

Query: 267  LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            L+ G+        A++L   M  K    +  TY  L+NGLCK  K   A+++ ++MK   
Sbjct: 1022 LVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMK-GN 1080

Query: 327  LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             K D   YG II   C  G   EA +   EM+  GI P+       + ++++++ GLC+ 
Sbjct: 1081 CKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPD-------VVVYSSLMDGLCRF 1133

Query: 387  DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                 A + +  M  R IS D  TY+SLI    + G   +    ++ +V  G  PD  T+
Sbjct: 1134 GRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTF 1193

Query: 446  SAVMTALWDRRKMRQAAELLLLELM 470
            + ++  L    K+ +A +  +LELM
Sbjct: 1194 TILIDGLCKEGKVGEAQQ--ILELM 1216


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 203/423 (47%), Gaps = 9/423 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   ++ T + +I       Q   AE +L+ +      I    F +I        R  
Sbjct: 446 SKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFE 505

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+R   +M      P      T++  L +E +   A   +  + E G    + + N LI
Sbjct: 506 SALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALI 565

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +G M  A ++ ++M  RG   D  TY TLI+G C+ GK+ E  +L  EM  +  
Sbjct: 566 HGLCK-TGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 624

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P   TY  LI+G+C+   ++EA+ L+ E +S+ + PNV+TY  ++DG CK     +  +
Sbjct: 625 EPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEK 684

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   ++++    N V Y+TL+   C+ G   EA ++ D M+ +G+ P    Y  +I   C
Sbjct: 685 LFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMC 744

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           +IG+ ++A   +DEM   G+ PN + ++        ++ G CK    ++   V   M + 
Sbjct: 745 NIGRMEDAKCLIDEMRKEGLLPNVVCYT-------ALIGGYCKLGQMDKVVNVLQEMSSY 797

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I  + +TY+ +I  + K GD+  +A+++ E+V  G +PD  T++ +        K+ + 
Sbjct: 798 DIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEG 857

Query: 462 AEL 464
             L
Sbjct: 858 KLL 860



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 204/393 (51%), Gaps = 9/393 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + GF  +   F+ +I  L   ++F  A   L  +        + +  ++  G  +  +  
Sbjct: 481 SRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHS 540

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ ++ ++ E G      +   ++  L +   ++ A R  + M E G      + N LI
Sbjct: 541 DAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLI 600

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G ++  FK+  EM  +G  PD++TY  LI+G+CR+GK+ EA  L+ E +++  
Sbjct: 601 SGCCK-EGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDL 659

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TY  +I+G C++  +EE  +LF E+ ++ +E N   Y++L+   C+ G + +A +
Sbjct: 660 VPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFK 719

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M SK   P   TYS+L++G+C  G++++A  ++D M+ +GL P+   Y  +I  +C
Sbjct: 720 LHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYC 779

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
            +G+  +  N L EM    I PN++T+++       ++ G  K+ D   A ++   M  +
Sbjct: 780 KLGQMDKVVNVLQEMSSYDIHPNKITYTV-------MIDGYSKSGDMKTAAKLLHEMVGK 832

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            I  D++TY+ L   FCK+G I +   + ++ V
Sbjct: 833 GIVPDTVTYNVLTNGFCKEGKIEEGKLLAEDGV 865



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 229/484 (47%), Gaps = 78/484 (16%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGYGRVHRPLDAM 105
           T + ++S LV AN+   +  + + + +    ++ D++L      + C+G G+V    DA+
Sbjct: 281 TCTFLLSSLVKANELEKSYWVFETMRQ---GVSPDVYLFSTAINAFCKG-GKVE---DAI 333

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           ++F  M++ G  P   +Y  ++  L +   L  AFRF   M + G+   + + +VLI  L
Sbjct: 334 QLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGL 393

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            K     + A  + +E   +G TP+   Y TLI+G C++G + +A  +  +M +K  +P 
Sbjct: 394 MKLE-KFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPN 452

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKG--VEPNVFT-------------------- 263
            VT  S+I G C+   +E+A  + EEM S+G  + P  FT                    
Sbjct: 453 SVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLR 512

Query: 264 -------------YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                         ++L+ GLCK G  S A+EL   ++ K    N+VT + L++GLCK G
Sbjct: 513 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTG 572

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            +QEAV +L +M  +G   D   Y  +IS  C  GK +E      EMV  GI P+  T++
Sbjct: 573 NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYN 632

Query: 371 L----------------------------HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
           L                            ++  +  ++ G CK D      +++  +  +
Sbjct: 633 LLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 692

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           ++ ++S+ Y++LI  +C+ G+  ++ ++ D++   G  P   T+S+++  + +  +M  A
Sbjct: 693 NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA 752

Query: 462 AELL 465
             L+
Sbjct: 753 KCLI 756



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 210/415 (50%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S++I+ L+   +F  A  +L    ++     E ++ ++  GY ++    DA+R+   M
Sbjct: 385 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 444

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P   +  +++    +  Q++ A      M   G      +   +I  LC NS  
Sbjct: 445 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNS-R 503

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            ++A +  REM  R   P+     TL+ GLC+ GK  +A EL+  +  K     +VT  +
Sbjct: 504 FESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA 563

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+GLC++ +++EA+RL ++M  +G   +  TY++L+ G CK G   +  +L   M+ + 
Sbjct: 564 LIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQG 623

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+  TY+ L++G+C+ GKL EAV + +  K + L P+   YG +I  +C   K +E  
Sbjct: 624 IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGE 683

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
               E++   +  N +       ++NT+++  C+  +   AF+++  MR++ I   + TY
Sbjct: 684 KLFTELLTQNLELNSV-------VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATY 736

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           SSLI   C  G +  +  ++DE+  +G LP+   ++A++       +M +   +L
Sbjct: 737 SSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVL 791



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 220/453 (48%), Gaps = 44/453 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GFR    ++ +++  L+ +    PA  LL R+   K        L +  G  + +R ++ 
Sbjct: 174 GFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLIDRK--------LPVLFGDPK-NRHIEI 224

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR----FYRHMREIGIQPCVASLNV 160
                 + E G      + + +L  +       + FR     +R +   G+ P V +   
Sbjct: 225 ASAMADLNEVGESGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTF 284

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+ +L K +  ++ ++ +F  M  +G +PD Y + T IN  C+ GK+ +A +LF +ME  
Sbjct: 285 LLSSLVK-ANELEKSYWVFETM-RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKL 342

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             SP VVTY +LI+GLC+  +++EA R  E+M   GV   + TYS L++GL K    ++A
Sbjct: 343 GVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEA 402

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
             +L+  + K   PN V Y+TL++G CK G L +A+ I   M  +G+ P++     II  
Sbjct: 403 NSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQG 462

Query: 341 FCDIGKYQEAANFLDEMVLGG--ITPNRLTWSLHIRIHN--------------------- 377
           FC IG+ ++A   L+EM+  G  I P   T  +H    N                     
Sbjct: 463 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 522

Query: 378 -----TVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
                T+V GLCK   +  A +++  +  +    + +T ++LI   CK G++ ++ R++ 
Sbjct: 523 DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 582

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +++  G + D+ T++ +++      K+ +  +L
Sbjct: 583 KMLERGFVLDKITYNTLISGCCKEGKVEEGFKL 615


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 185/353 (52%), Gaps = 9/353 (2%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           KM + G EP   +  ++L      N++  A      M E+G +P   +   LI  L  ++
Sbjct: 138 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHN 197

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
              +A   I R M  RGC PD  TYG ++NGLC+ G    A  L  +ME       VV Y
Sbjct: 198 KASEAVALIDR-MVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           +++I+ LC+ +  ++A+ LF EM +KGV PNV TYSSL+  LC  G  S A  LL  MI 
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE 316

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           ++  PN+VT+S L++   K+GKL +A ++ + M  + + P+   Y  +I+ FC + +  E
Sbjct: 317 RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGE 376

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSL 408
           A   L+ M+     PN +T+       NT++ G CK    ++  +++  M  R +  +++
Sbjct: 377 AKQMLELMIRKDCLPNVVTY-------NTLINGFCKAKRVDKGMELFREMSQRGLVGNTV 429

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           TY++LI  F +  D   +  +  ++V  G  P+  T++ ++  L    K+ +A
Sbjct: 430 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKA 482



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 192/378 (50%), Gaps = 9/378 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  T + +++     N+   A  L+D++ +         F ++  G    ++  +A
Sbjct: 143 GYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEA 202

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + D+M + GC+P   +Y  V+  L +     LA      M    I+  V   + +I +
Sbjct: 203 VALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDS 262

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK     D A  +F EM N+G  P+  TY +LI+ LC  G+  +A  L  +M  +  +P
Sbjct: 263 LCKYRHE-DDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINP 321

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VT+++LI+   +   + +A +L+EEM  + ++PN+FTYSSL++G C      +A ++L
Sbjct: 322 NLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQML 381

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           ++MI K   PN+VTY+TL+NG CK  ++ + +E+   M  +GL  +   Y  +I  F   
Sbjct: 382 ELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQA 441

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
                A     +MV  G+ PN LT+       N ++ GLCK     +A  V+  ++  ++
Sbjct: 442 RDCDNAQMVFKQMVSVGVHPNILTY-------NILLDGLCKNGKLAKAMVVFEYLQRSTM 494

Query: 404 SVDSLTYSSLITCFCKKG 421
             D  TY+ +I   CK G
Sbjct: 495 EPDIYTYNIMIEGMCKAG 512



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 190/363 (52%), Gaps = 7/363 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M +    P+   +  +L+ + + N+  L   F   M  +GI   + + N+LI
Sbjct: 61  DAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILI 120

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  A  +  +M   G  PD  T  +L+NG C   +I +A  L  +M     
Sbjct: 121 NCFCR-CSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGY 179

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  VT+T+LI+GL       EA+ L + M  +G +P++ TY ++++GLCK G +  A+ 
Sbjct: 180 KPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALN 239

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M + +   N+V YST+++ LCK     +A+ +   M+ +G++P+   Y  +ISC C
Sbjct: 240 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 299

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
           + G++ +A+  L +M+   I PN +T+S  I   +  V+   K    +A ++Y  M  RS
Sbjct: 300 NYGRWSDASRLLSDMIERKINPNLVTFSALI---DAFVK---KGKLVKAEKLYEEMIKRS 353

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  +  TYSSLI  FC    + ++ ++++ ++   CLP+  T++ ++      +++ +  
Sbjct: 354 IDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGM 413

Query: 463 ELL 465
           EL 
Sbjct: 414 ELF 416



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 162/304 (53%), Gaps = 1/304 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+  +++ L        A +LL+++   K +    I+ ++     +     DA
Sbjct: 213 GCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDA 272

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M+  G  P   +Y ++++ L    +   A R    M E  I P + + + LI A
Sbjct: 273 LNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDA 332

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G +  A K++ EM  R   P+ +TY +LING C L ++ EAK++ + M  K C P
Sbjct: 333 FVK-KGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLP 391

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY +LING C++K V++ M LF EM  +G+  N  TY++L+ G  +      A  + 
Sbjct: 392 NVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 451

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+S    PNI+TY+ LL+GLCK GKL +A+ + + ++   ++PD   Y  +I   C  
Sbjct: 452 KQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKA 511

Query: 345 GKYQ 348
           GK++
Sbjct: 512 GKWK 515



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 159/308 (51%), Gaps = 9/308 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F  M      P    +  L++ + ++ K        ++ME    S  + TY  
Sbjct: 59  LDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNI 118

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C+   +  A+ L  +M   G EP++ T +SL++G C G   S A+ L+  M+   
Sbjct: 119 LINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMG 178

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           ++P+ VT++TL++GL    K  EAV ++DRM  +G +PD   YG +++  C  G    A 
Sbjct: 179 YKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLAL 238

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
           N L++M    I  N       + I++TV+  LCK    + A  ++  M N+ +  + +TY
Sbjct: 239 NLLNKMEAAKIEAN-------VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 291

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           SSLI+C C  G    ++R++ +++     P+  T+SA++ A   + K+ + AE L  E++
Sbjct: 292 SSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVK-AEKLYEEMI 350

Query: 471 NKCVEAEV 478
            + ++  +
Sbjct: 351 KRSIDPNI 358



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 178/360 (49%), Gaps = 15/360 (4%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           T   Y  VL   + + +L  A   +  M +    P +   + L+ A+ K +   D     
Sbjct: 42  TSYDYREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMN-KFDLVISF 100

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
             +M   G + + YTY  LIN  CR  ++  A  L  +M      P +VT  SL+NG C 
Sbjct: 101 GEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCH 160

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
              + +A+ L ++M   G +P+  T+++L+ GL     +S+A+ L+  M+ +  +P++VT
Sbjct: 161 GNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVT 220

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y  ++NGLCK G    A+ +L++M+   ++ +  +Y  +I   C      +A N   EM 
Sbjct: 221 YGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 280

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
             G+ PN +T+S       +++  LC     +D +R       M  R I+ + +T+S+LI
Sbjct: 281 NKGVRPNVITYS-------SLISCLCNYGRWSDASRLLS---DMIERKINPNLVTFSALI 330

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             F KKG + K+ ++ +E++     P+  T+S+++       ++ +A ++L L +   C+
Sbjct: 331 DAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCL 390


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 202/418 (48%), Gaps = 12/418 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S++I S  +  +++ + D      +F  +   +    R   +   L+I KL+  N F   
Sbjct: 56  SSRIRSYTITSVLQEQPDTRLGFRLFIWSLKSWHLRCR---TVQDLIIGKLIKENAFELY 112

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
             +L  +      I+ + F  +   Y        A+  F  M++F C+P   ++  +L  
Sbjct: 113 WKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHF 172

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           LV +    LA   Y  M +  + P V +  +LI  LCK   T D A  +F EM +RG  P
Sbjct: 173 LVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQD-ALVLFDEMTDRGILP 231

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +   Y  +++GLC+  KI++A+ LF +M    C+  ++TY  L+NG C+S  +++A  L 
Sbjct: 232 NQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLL 291

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           + +   G    V  Y  L++GL +     +A    Q M+ +  +P+++ Y+ ++ GL +E
Sbjct: 292 QLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQE 351

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G++ EA+ +L  M  +GL+PD   Y  +I  FCD+G   EA +   E+      PN  T+
Sbjct: 352 GRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTY 411

Query: 370 SLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           S+       ++ G+CK    N+A  ++  M         +T++SLI   CK   + ++
Sbjct: 412 SI-------LICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 187/395 (47%), Gaps = 60/395 (15%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDI 87
           ALV+FD  T     G   +   +S+++S L  A +   A+ L  ++    C+   IT ++
Sbjct: 217 ALVLFDEMTDR---GILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNV 273

Query: 88  FLS-ICR------------------------GYG-------RVHRPLDAMRVFDKMKEFG 115
            L+  C+                        GYG       R  R  +A   + KM    
Sbjct: 274 LLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLREN 333

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
            +P    Y  ++  L +E ++  A      M E G++P     N LIK  C + G +D A
Sbjct: 334 IKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFC-DMGYLDEA 392

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             +  E+    C P+++TY  LI G+C+ G I +A+ +FKEME   C P+VVT+ SLING
Sbjct: 393 ESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLING 452

Query: 236 LCQSKSVEEAMRLFEEMR-----------SKGVEPNVFTYSSL---MDGLCKGGCSSQAM 281
           LC++  +EEA  LF +M            S+G +  VF  +SL   M+ LC+ G   +A 
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTD-KVFDIASLQVMMERLCESGMILKAY 511

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +LL  ++     P+I TY+ L+NG CK G +  A ++   M+L+G  PD+  YG +I   
Sbjct: 512 KLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGL 571

Query: 342 CDIGKYQEAANFLDEMVLGGITPNR------LTWS 370
              G+ ++A    ++MV  G  P        +TWS
Sbjct: 572 YRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWS 606



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 209/463 (45%), Gaps = 65/463 (14%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDA 104
           + D   F+L++  LV    F  A  + +++   KC++  D+  +  +  G  +  +  DA
Sbjct: 160 KPDLFAFNLILHFLVRKEAFLLALAVYNQM--LKCNLNPDVVTYGILIHGLCKTCKTQDA 217

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +FD+M + G  P    Y  VL+ L +  ++  A R +  MR  G    + + NVL+  
Sbjct: 218 LVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNG 277

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK SG +D AF + + +   G       YG LINGL R  +  EA   +++M  +   P
Sbjct: 278 FCK-SGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKP 336

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V+ YT +I GL Q   V EA+ L  EM  +G+ P+   Y++L+ G C  G   +A E L
Sbjct: 337 DVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA-ESL 395

Query: 285 QMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           ++ ISK    PN  TYS L+ G+CK G + +A  I   M+  G  P    +  +I+  C 
Sbjct: 396 RLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCK 455

Query: 344 IGKYQEA------------------------------------------------ANFLD 355
             + +EA                                                   L 
Sbjct: 456 ANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLM 515

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
           ++V  G+ P+       IR +N ++ G CK  + N AF+++  M+ +    DS+TY +LI
Sbjct: 516 QLVDSGVLPD-------IRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLI 568

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
               + G    +  I +++V  GC+P+  T+  +MT  W  R+
Sbjct: 569 DGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMT--WSCRE 609



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 139/277 (50%), Gaps = 27/277 (9%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--- 81
           E  V +AL +    T     G R D   ++ +I           AE L   ++K  C   
Sbjct: 351 EGRVTEALTLLGEMTER---GLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPN 407

Query: 82  DITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           + T  I +  +C+  G +++   A  +F +M++ GC P+  ++ +++  L + N+L+ A 
Sbjct: 408 NHTYSILICGMCKN-GLINK---AQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEAR 463

Query: 141 RFYRHMREIGIQPC--------------VASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
             +  M EI  +P               +ASL V+++ LC+ SG +  A+K+  ++ + G
Sbjct: 464 LLFYQM-EIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCE-SGMILKAYKLLMQLVDSG 521

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             PD  TY  LING C+ G I  A +LFKEM+ K   P  VTY +LI+GL ++   E+A+
Sbjct: 522 VLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDAL 581

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            +FE+M  KG  P   TY ++M   C+    S A+ +
Sbjct: 582 EIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSV 618



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 137/314 (43%), Gaps = 49/314 (15%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           +  +I+ L  A ++  A     ++ +E       ++  + RG  +  R  +A+ +  +M 
Sbjct: 306 YGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMT 365

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           E G  P    Y  ++    +   L  A      + +    P   + ++LI  +CKN G +
Sbjct: 366 ERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKN-GLI 424

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET------------- 219
           + A  IF+EM   GC P   T+ +LINGLC+  ++ EA+ LF +ME              
Sbjct: 425 NKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQG 484

Query: 220 ---------------KACS--------------------PTVVTYTSLINGLCQSKSVEE 244
                          + C                     P + TY  LING C+  ++  
Sbjct: 485 TDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNING 544

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A +LF+EM+ KG  P+  TY +L+DGL + G +  A+E+ + M+ K   P   TY T++ 
Sbjct: 545 AFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMT 604

Query: 305 GLCKEGKLQEAVEI 318
             C+E  +  A+ +
Sbjct: 605 WSCRENNISLALSV 618



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 168/405 (41%), Gaps = 66/405 (16%)

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           +SY T+ ++L E+   +L FR +    +     C    +++I  L K +   +  +K+ +
Sbjct: 60  RSY-TITSVLQEQPDTRLGFRLFIWSLKSWHLRCRTVQDLIIGKLIKENA-FELYWKVLQ 117

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
           E+ N      S  +  LI      G   +A E F  M    C P +  +  +++ L + +
Sbjct: 118 ELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHFLVRKE 177

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
           +   A+ ++ +M    + P+V TY  L+ GLCK   +  A+ L   M  +   PN + YS
Sbjct: 178 AFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYS 237

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG--------------- 345
            +L+GLC+  K+ +A  +  +M+  G   D   Y  +++ FC  G               
Sbjct: 238 IVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKD 297

Query: 346 --------------------KYQEAANFLDEMVLGGITPNRLTWSLHIR----------- 374
                               +Y+EA  +  +M+   I P+ + +++ IR           
Sbjct: 298 GHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEA 357

Query: 375 -----------------IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
                             +N +++G C     + A  + L +       ++ TYS LI  
Sbjct: 358 LTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICG 417

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            CK G I+K+  I  E+   GCLP   T+++++  L    ++ +A
Sbjct: 418 MCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 20/221 (9%)

Query: 47  RHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           +HD    N T+S++I  +        A+ +   + K  C  +   F S+  G  + +R  
Sbjct: 401 KHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLE 460

Query: 103 DAMRVFDKMKEFGCEP---------TPKSY-ITVLAILVE---ENQLKL-AFRFYRHMRE 148
           +A  +F +M E   +P         T K + I  L +++E   E+ + L A++    + +
Sbjct: 461 EARLLFYQM-EIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVD 519

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G+ P + + N+LI   CK  G ++ AFK+F+EM  +G  PDS TYGTLI+GL R G+  
Sbjct: 520 SGVLPDIRTYNILINGFCK-FGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNE 578

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +A E+F++M  K C P   TY +++   C+  ++  A+ ++
Sbjct: 579 DALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVW 619


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/461 (26%), Positives = 233/461 (50%), Gaps = 18/461 (3%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           + D++ AL +FD       NG   +N T++++I           A ++ +++  +  DI+
Sbjct: 342 QGDLDSALELFDKMNE---NGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNK--DIS 396

Query: 85  EDIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
             +F   S+ RGY +   P +A ++FD+    G      +Y ++L+ L +E ++  A   
Sbjct: 397 PTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANV-FTYNSLLSWLCKEGKMSEACSI 455

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +  M   G++P V S N +I   C+  G MD+A  +F EM  +G  P+  TY  L++G  
Sbjct: 456 WEKMVRKGVRPSVVSYNNMILGHCQ-QGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYF 514

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           + G    A  L+  M  +  +P+  T   +INGLC++    E+    +++  +G  P   
Sbjct: 515 KKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCM 574

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY+ ++DG  K G  + A+ +   M      PN+ TY+ L+NG CK   +  A++++D M
Sbjct: 575 TYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEM 634

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           K +G++ D  +Y  +I  FC  G    A+  L E+   G++PN++ +S       +++ G
Sbjct: 635 KNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYS-------SMISG 687

Query: 383 LCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
             K  +   A  ++  M N  I  D   Y++LI+   K+G +  ++ +  E++  G +PD
Sbjct: 688 FRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPD 747

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
             T+S ++  L ++ ++  A + +L ++  KC+   V I N
Sbjct: 748 LITYSVLIHGLCNKGQLENAQK-ILEDMDRKCMTPTVFIYN 787



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 178/347 (51%), Gaps = 13/347 (3%)

Query: 35  FDSATAEYA----NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK---CDITEDI 87
            DSA   +      G + +  T+S+++           A  L DR+  E     D T +I
Sbjct: 484 MDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNI 543

Query: 88  FLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            ++ +C+  GR     D ++   K+ + G  PT  +Y  ++   V+E  +  A   Y  M
Sbjct: 544 IINGLCKA-GRTSESQDRLK---KLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEM 599

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            +IG+ P V +   LI   CK S  MD A K+  EM N+G   D   Y  LI+G CR G 
Sbjct: 600 CKIGVSPNVFTYTNLINGFCK-SNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGD 658

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A +L  E++    SP  V Y+S+I+G  + +++E A+ L + M ++G+  ++  Y++
Sbjct: 659 MVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTT 718

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+ GL K G    A EL   M++K   P+++TYS L++GLC +G+L+ A +IL+ M  + 
Sbjct: 719 LISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKC 778

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           + P   +Y  +I+     G  QEA    +EM+  G+ P+  T+ + +
Sbjct: 779 MTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILV 825



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 166/359 (46%), Gaps = 42/359 (11%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VF +M E G +P   +Y  ++    ++   + AF  Y  MR   I P   + N++I 
Sbjct: 487 ANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIIN 546

Query: 164 ALCK----------------------------------NSGTMDAAFKIFREMPNRGCTP 189
            LCK                                    G++++A  ++ EM   G +P
Sbjct: 547 GLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSP 606

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           + +TY  LING C+   +  A ++  EM+ K     V  Y +LI+G C+   +  A +L 
Sbjct: 607 NVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLL 666

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            E++  G+ PN   YSS++ G  K      A+ L + MI++    ++  Y+TL++GL KE
Sbjct: 667 SELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKE 726

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           GKL  A E+   M  +G+ PD   Y  +I   C+ G+ + A   L++M    +TP     
Sbjct: 727 GKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPT---- 782

Query: 370 SLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
              + I+NT++ G  K  +   AF+++  M ++ +  D  TY  L+    K G++   A
Sbjct: 783 ---VFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNLFSGA 838



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 177/371 (47%), Gaps = 12/371 (3%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F  +   Y +  R  DA+  F+ + E    P        L+ LV+ N ++ A   Y  M
Sbjct: 156 VFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKM 215

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G++   A+++V+I+A  +  G ++ A   FRE  N+G   D+  Y  +I  +C+   
Sbjct: 216 ASKGVKGDCATISVMIRASMR-EGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPD 274

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRLFEEMRSKGVEPNVFTYS 265
              A  L +EM  K   P  V +T +I G+C  +  + EA+++  EM S G   NV   +
Sbjct: 275 SVAALGLLREMRDKGWVPHEVIFTRVI-GVCMKQGKMLEAVKVKGEMLSCGKPMNVVVAT 333

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +LM G CK G    A+EL   M      PN VTY+ ++   CK G + +A EI ++MK +
Sbjct: 334 TLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNK 393

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            + P       +I  +      +EA+   DE V  GI         ++  +N+++  LCK
Sbjct: 394 DISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIA--------NVFTYNSLLSWLCK 445

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               + A  ++  M  + +    ++Y+++I   C++GD+  +  +  E++  G  P+  T
Sbjct: 446 EGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLIT 505

Query: 445 WSAVMTALWDR 455
           +S +M   + +
Sbjct: 506 YSVLMDGYFKK 516



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 173/450 (38%), Gaps = 109/450 (24%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+ +  +    E   + +  +L   V+  ++  A   +  + E  I PC+  +N+ +  L
Sbjct: 140 RLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSEL 199

Query: 166 CKNS----------------------------------GTMDAAFKIFREMPNRGCTPDS 191
            KN+                                  G ++ A   FRE  N+G   D+
Sbjct: 200 VKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDA 259

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY---------------------- 229
             Y  +I  +C+      A  L +EM  K   P  V +                      
Sbjct: 260 RAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGE 319

Query: 230 -------------TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
                        T+L+ G C+   ++ A+ LF++M   G+ PN  TY+ +++  CK G 
Sbjct: 320 MLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGN 379

Query: 277 SSQAMELLQMMISKRHRP----------------------------------NIVTYSTL 302
             +A E+   M +K   P                                  N+ TY++L
Sbjct: 380 MDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSL 439

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           L+ LCKEGK+ EA  I ++M  +G++P    Y  +I   C  G    A     EM+  G+
Sbjct: 440 LSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGL 499

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
            PN +T+S+ +  +        K D   AF +Y  MR  +I+    T + +I   CK G 
Sbjct: 500 KPNLITYSVLMDGY------FKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGR 553

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             +S   + +LV +G +P   T++ ++   
Sbjct: 554 TSESQDRLKKLVQEGFIPTCMTYNCIIDGF 583



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 151/348 (43%), Gaps = 26/348 (7%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           T   YI  L     + Q  L++ F    ++ G+   V +L VL+  L K++ T   A   
Sbjct: 63  TQTQYIDTLLNHQNDPQSALSY-FTWASQKRGLIKSVDALCVLLHILTKSTETCGKA--- 118

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
            R + NR  + D     +++  + RL  I  ++ L  E +++        +  L+N   +
Sbjct: 119 -RNLLNRFASDDWGPVPSVV--VARL--IESSRRLDFESDSR-------VFNYLLNSYVK 166

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +K + +A+  F  +  K + P +   +  +  L K     +A ++   M SK  + +  T
Sbjct: 167 TKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDCAT 226

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
            S ++    +EGKL+EA       K +G++ DA  Y  +I   C       A   L EM 
Sbjct: 227 ISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMR 286

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTDPN--RAFQVYLSMRNRSISVDSLTYSSLITC 416
             G  P+ + +        T V G+C        A +V   M +    ++ +  ++L+  
Sbjct: 287 DKGWVPHEVIF--------TRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKG 338

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +CK+GD+  +  + D++  +G  P+  T++ ++        M +A E+
Sbjct: 339 YCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEI 386


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 178/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 88  VLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 146

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P + +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 147 GLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 206

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 207 DELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 266

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M  +GLKPD   Y  +I   C  G    A      ++   I  +
Sbjct: 267 LCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLD 326

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            +       ++  ++ GLC+     D  +  +  LS+    ++ D+ TY+ +I  FCKKG
Sbjct: 327 DV-------VYTALISGLCQEGRSVDAEKMLREMLSV---GLNPDTGTYTMIINEFCKKG 376

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG +P   T++ +M  
Sbjct: 377 DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/268 (36%), Positives = 157/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 136 AQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLIN 195

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++  
Sbjct: 196 GLCKES-KMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 254

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L ++M  KG++P+  TY++L+DG CK G    A E 
Sbjct: 255 PDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEH 314

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + +I +  R + V Y+ L++GLC+EG+  +A ++L  M   GL PD G Y  II+ FC 
Sbjct: 315 RKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCK 374

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 375 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 402



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 156/292 (53%), Gaps = 8/292 (2%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
            +  + E+   G     Y +  L++  C+ G I  A+ +F  +      P+ V+Y +L+N
Sbjct: 101 VWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMN 160

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G  +   ++E  RL   M + GV+P+V+TYS L++GLCK      A EL   M+ K   P
Sbjct: 161 GYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVP 220

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +
Sbjct: 221 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLI 280

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
           D+M   G+ P+++T++       T++ G CK      AF+    +   +I +D + Y++L
Sbjct: 281 DDMSRKGLKPDKITYT-------TLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTAL 333

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I+  C++G    + +++ E++  G  PD GT++ ++     +  + + ++LL
Sbjct: 334 ISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLL 385



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 145/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 120 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAML 179

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 180 ASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 238

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TLI GLC+ G + +A +L  +M  K   P  +TYT+L
Sbjct: 239 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTL 298

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   +  A    + +  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 299 IDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGL 358

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
            P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 359 NPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 405



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 132/284 (46%), Gaps = 9/284 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E        D Y +  LI      G + +A E +            
Sbjct: 24  KGKGSASAVFAAILETKGTQ-RSDIYVFSGLITAYLESGFLRDAIECYXLTRKHKLWVPF 82

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + K  +     +EE+   G   +++ ++ LM   CK G    A  +   
Sbjct: 83  DTCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDA 142

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP+ V+Y+TL+NG  + G L E   +   M   G++PD   Y  +I+  C   K
Sbjct: 143 ITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 202

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM++ G+ PN +T++       T++ G CK    + A ++Y  M ++S+  
Sbjct: 203 MDDADELFDEMLVKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLLP 255

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           D +TY++LI   CKKGD+ ++  ++D++   G  PD+ T++ ++
Sbjct: 256 DLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLI 299


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 213/427 (49%), Gaps = 26/427 (6%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVFDK 110
           FS ++SK+  +  +     L   +  E C I  D++    +     R  R + A+ V  K
Sbjct: 72  FSKVLSKIAKSKNYDLVISLFHHM--EVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGK 129

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M +FG EP   +  +++    + N++  A      M E+G +P V   N +I   CK  G
Sbjct: 130 MMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK-IG 188

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++ A ++F  M   G   D+ TY +L+ GLC  G+  +A  L ++M  +   P V+T+T
Sbjct: 189 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFT 248

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++I+   +     EAM+L+EEM  + V+P+VFTY+SL++GLC  G   +A ++L +M++K
Sbjct: 249 AVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTK 308

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++VTY+TL+NG CK  ++ E  ++   M  +GL  D   Y  II  +   G+   A
Sbjct: 309 GCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAA 368

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
                 M      PN       IR ++ ++ GLC      +A  ++ +M+   I +D  T
Sbjct: 369 QEIFSRM---DSRPN-------IRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITT 418

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL-----WDR-----RKMR 459
           Y+ +I   CK G++  +  +   L   G  PD  +++ +++       WD+     RKM+
Sbjct: 419 YNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 478

Query: 460 QAAELLL 466
           +   L L
Sbjct: 479 EDGLLPL 485



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 194/380 (51%), Gaps = 15/380 (3%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +F KM +    P+   +  VL+ + +     L    + HM   GI   + S N++I  LC
Sbjct: 56  LFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLC 115

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           + S  +  A  +  +M   G  PD  T  +LING C+  ++++A +L  +ME     P V
Sbjct: 116 RCSRFV-IALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDV 174

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           V Y ++I+G C+   V +A+ LF+ M   GV  +  TY+SL+ GLC  G  S A  L++ 
Sbjct: 175 VIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRD 234

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+ +   PN++T++ +++   KEGK  EA+++ + M  + + PD   Y  +I+  C  G+
Sbjct: 235 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGR 294

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             EA   LD MV  G  P+ +T       +NT++ G CK+   +   +++  M  R +  
Sbjct: 295 VDEAKQMLDLMVTKGCLPDVVT-------YNTLINGFCKSKRVDEGTKLFREMAQRGLVG 347

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D++TY+++I  + + G    +  I   +      P+  T+S ++  L    ++ +A  L+
Sbjct: 348 DTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKA--LV 402

Query: 466 LLELMNKCVEAEVDIQNQDV 485
           L E M K  E E+DI   ++
Sbjct: 403 LFENMQKS-EIELDITTYNI 421



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 168/352 (47%), Gaps = 33/352 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  T S +I+     N+   A DL+ ++ +        I+ +I  G  ++    DA
Sbjct: 134 GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 193

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +FD+M+  G      +Y +++A L    +   A R  R M    I P V +   +I  
Sbjct: 194 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDV 253

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G    A K++ EM  R   PD +TY +LINGLC  G++ EAK++   M TK C P
Sbjct: 254 FVK-EGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 312

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV--------------------------- 257
            VVTY +LING C+SK V+E  +LF EM  +G+                           
Sbjct: 313 DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIF 372

Query: 258 -----EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
                 PN+ TYS L+ GLC      +A+ L + M       +I TY+ +++G+CK G +
Sbjct: 373 SRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 432

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           ++A ++   +  +GLKPD   Y  +IS FC   ++ ++     +M   G+ P
Sbjct: 433 EDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 160/359 (44%), Gaps = 33/359 (9%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           V  M K+  +     V  LI      N+     D  +     GFR D   ++ +I     
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
                 A +L DR+ ++        + S+  G     R  DA R+   M      P   +
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           +  V+ + V+E +   A + Y  M    + P V + N LI  LC + G +D A ++   M
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMH-GRVDEAKQMLDLM 305

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA--------------------- 221
             +GC PD  TY TLING C+  ++ E  +LF+EM  +                      
Sbjct: 306 VTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRP 365

Query: 222 -----------CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
                        P + TY+ L+ GLC +  VE+A+ LFE M+   +E ++ TY+ ++ G
Sbjct: 366 DAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHG 425

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           +CK G    A +L + +  K  +P++V+Y+T+++G C++ +  ++  +  +M+  GL P
Sbjct: 426 MCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 145/267 (54%), Gaps = 8/267 (2%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           E  +LF +M      P++V ++ +++ + +SK+ +  + LF  M   G+  ++++Y+ ++
Sbjct: 52  EEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVI 111

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           + LC+      A+ ++  M+   + P++VT S+L+NG C+  ++ +A++++ +M+  G +
Sbjct: 112 NCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFR 171

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           PD  +Y  II   C IG   +A    D M   G+  + +T       +N++V GLC +  
Sbjct: 172 PDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVT-------YNSLVAGLCCSGR 224

Query: 389 -NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            + A ++   M  R I  + +T++++I  F K+G   ++ ++ +E+      PD  T+++
Sbjct: 225 WSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNS 284

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCV 474
           ++  L    ++ +A ++L L +   C+
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGCL 311


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/432 (30%), Positives = 215/432 (49%), Gaps = 33/432 (7%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICRGYGRVHR 100
           G   + S F+ ++    +   +  A  LL+R+    C    +  +IF+ SIC G  ++  
Sbjct: 341 GCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSIC-GQEKLPS 399

Query: 101 P--LD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           P  LD A +++ +M    C     +       L    +   AF+  + M   G  P  ++
Sbjct: 400 PDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTST 459

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            + +I  LC ++  ++ AF +F+EM   G TPD YTY  LI+  C+ G I +A+ LF+EM
Sbjct: 460 YSKVITFLC-HATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM 518

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
            +  CSPTVVTYT+LI+   ++K V +A  +F  M   G  PN  TY +L+DGLCK G  
Sbjct: 519 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 578

Query: 278 SQAMELLQMMIS--------------KRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDR 321
           S+A E+   +I                RH   PN+VTY  L++GLCK  K+  A E+LD 
Sbjct: 579 SKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDA 638

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M   G +P+  +Y  +I  FC  GK   A     +M   G  P+       +  + +++ 
Sbjct: 639 MLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS-------VHTYTSLID 691

Query: 382 GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            + K    + A +V   M   S + + +TY+++I   C+ G+  K+ +++  +   GC P
Sbjct: 692 RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 751

Query: 441 DEGTWSAVMTAL 452
           +  T++A++  L
Sbjct: 752 NVVTYTALIDGL 763



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 207/479 (43%), Gaps = 64/479 (13%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F+ D    + MIS L+ A+ F  A   L R+    C      + ++  G+ +  +     
Sbjct: 272 FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCK 331

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+ + M   GC P P  + +++     E     A++    M   G  P     N+ I ++
Sbjct: 332 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 391

Query: 166 CKNS----------------------------------------GTMDAAFKIFREMPNR 185
           C                                           G  D AF++ +EM  +
Sbjct: 392 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 451

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD+ TY  +I  LC   K+ +A  LF+EM+    +P V TYT LI+  C++  +E+A
Sbjct: 452 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQA 511

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LFEEMRS G  P V TY++L+    K     QA ++   M+    RPN VTY  L++G
Sbjct: 512 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 571

Query: 306 LCKEGKLQEAVEILDRM----------------KLQGLKPDAGLYGKIISCFCDIGKYQE 349
           LCK G + +A E+  ++                    L P+   YG ++   C   K   
Sbjct: 572 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 631

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A   LD M+  G  PN      HI +++ ++ G CK    + A +V+L M          
Sbjct: 632 AHELLDAMLSSGCEPN------HI-VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 684

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           TY+SLI    K G +  + +++ +++ D C P+  T++A++  L    +  +A +LL L
Sbjct: 685 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSL 743



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 206/460 (44%), Gaps = 19/460 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T + V+ ++ A +D  +    F    AE   G+ H  + +  +   L    + R AE L
Sbjct: 103 LTDSVVVAVLGAVRDAPELCARF-FLWAERQVGYSHTGACYDALADALGFDGRARDAERL 161

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L  + +E  ++   +   + R   R     +A+    ++K+FG  P+  +Y  ++ +L  
Sbjct: 162 LREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSS 221

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             Q+ L FR  + M E G      ++     ALCK     DA   I RE        D+ 
Sbjct: 222 AGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIERE----DFKLDTV 277

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
               +I+GL       EA      M   +C P VVTY +L++G  + K +    R+   M
Sbjct: 278 LCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMM 337

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            ++G  PN   ++SL+   C     + A +LL  M +    P  V Y+  +  +C + KL
Sbjct: 338 MTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKL 397

Query: 313 --QEAVEILDRMKLQGLKPDAGL----YGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
              + +++ +++  + L  +  L          C C +GK+ +A   + EM+  G  P+ 
Sbjct: 398 PSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDT 457

Query: 367 LTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
            T+S        V+  LC  T   +AF ++  M+   ++ D  TY+ LI  FCK G I +
Sbjct: 458 STYS-------KVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQ 510

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  + +E+   GC P   T++A++ A    +++ QA ++ 
Sbjct: 511 AQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 550



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 151/311 (48%), Gaps = 24/311 (7%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++V+  +     V KA ++F         G   D  T++++I     A     A+ L 
Sbjct: 459 TYSKVITFLCHATKVEKAFLLFQEMKMV---GVTPDVYTYTILIDSFCKAGLIEQAQWLF 515

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           + +    C  T   + ++   Y +  +   A  +F +M + GC P   +Y  ++  L + 
Sbjct: 516 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 575

Query: 134 NQLKLAFRFYRHMREIG------------------IQPCVASLNVLIKALCKNSGTMDAA 175
             +  AF  Y  +  IG                  + P V +   L+  LCK +  +D A
Sbjct: 576 GNISKAFEVYAKL--IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK-AHKVDHA 632

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            ++   M + GC P+   Y  LI+G C+ GKI  A+E+F +M      P+V TYTSLI+ 
Sbjct: 633 HELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDR 692

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           + +   ++ AM++  +M      PNV TY++++DGLC+ G S +A++LL +M  K   PN
Sbjct: 693 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPN 752

Query: 296 IVTYSTLLNGL 306
           +VTY+ L++GL
Sbjct: 753 VVTYTALIDGL 763



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 1/146 (0%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G  + H+   A  + D M   GCEP    Y  ++    +  ++  A   +  M + G  P
Sbjct: 622 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 681

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V +   LI  + K+ G +D A K+  +M    CTP+  TY  +I+GLCR+G+  +A +L
Sbjct: 682 SVHTYTSLIDRMFKD-GRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKL 740

Query: 214 FKEMETKACSPTVVTYTSLINGLCQS 239
              ME K CSP VVTYT+LI+GL QS
Sbjct: 741 LSLMEEKGCSPNVVTYTALIDGLGQS 766


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 220/455 (48%), Gaps = 20/455 (4%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S  I+   VLQ +R  K     L  FD  + +   GF H   +F LM+  L  A     A
Sbjct: 63  SQTISRTTVLQTLRLIKVPADGLRFFDWVSNK---GFSHKEQSFFLMLEFLGRARNLNVA 119

Query: 70  EDLLDRVNKEK---CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
            + L  + +       + +  F S+ R YG      +++++F  MK+ G  P+  ++ ++
Sbjct: 120 RNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSL 179

Query: 127 LAILVEENQLKLAFRFYRHMREI-GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           L+IL++  +  +A   +  MR   G+ P   + N LI   CKNS  +D AF+IF++M   
Sbjct: 180 LSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNS-MVDEAFRIFKDMELY 238

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVE 243
            C PD  TY T+I+GLCR GK+  A  +   M  KA    P VV+YT+L+ G C  + ++
Sbjct: 239 HCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEID 298

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR-----HRPNIVT 298
           EA+ +F +M S+G++PN  TY++L+ GL +   + +  E+  ++I          P+  T
Sbjct: 299 EAVLVFHDMLSRGLKPNAVTYNTLIKGLSE---AHRYDEIKDILIGGNDAFTTFAPDACT 355

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           ++ L+   C  G L  A+++   M    L PD+  Y  +I   C   ++  A    +E+ 
Sbjct: 356 FNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELF 415

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCF 417
              +   +         +N + + LC     + A +V+  +  R +  D  +Y +LIT  
Sbjct: 416 EKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQ-DPPSYKTLITGH 474

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           C++G    +  ++  ++    +PD  T+  ++  L
Sbjct: 475 CREGKFKPAYELLVLMLRREFVPDLETYELLIDGL 509



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 146/309 (47%), Gaps = 23/309 (7%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT---YTS 231
             + F  + N+G +    ++  ++  L R   +  A+     +E ++     +    + S
Sbjct: 84  GLRFFDWVSNKGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNS 143

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL-QMMISK 290
           LI     +   +E+++LF+ M+  G+ P+V T++SL+  L K G +  A +L  +M  + 
Sbjct: 144 LIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTY 203

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P+  T++TL+NG CK   + EA  I   M+L    PD   Y  II   C  GK + A
Sbjct: 204 GVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIA 263

Query: 351 ANFLDEMVLGG--ITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDS 407
            N L  M+     + PN ++++       T+V+G C K + + A  V+  M +R +  ++
Sbjct: 264 HNVLSGMLKKATDVHPNVVSYT-------TLVRGYCMKQEIDEAVLVFHDMLSRGLKPNA 316

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELV-----LDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +TY++LI       + H+   I D L+          PD  T++ ++ A  D   +  AA
Sbjct: 317 VTYNTLIKGL---SEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHL-DAA 372

Query: 463 ELLLLELMN 471
             +  E++N
Sbjct: 373 MKVFQEMLN 381



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 170/384 (44%), Gaps = 31/384 (8%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           ++++++A+++F    +    G + +  T++ +I  L  A+++   +D+L   N       
Sbjct: 294 KQEIDEAVLVFHDMLSR---GLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFA 350

Query: 85  ED--IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            D   F  + + +        AM+VF +M      P   SY  ++  L   N+   A   
Sbjct: 351 PDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETL 410

Query: 143 YRHMREIGI-------QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           +  + E  +       +P  A+ N + + LC N  T  A  K+FR++  RG   D  +Y 
Sbjct: 411 FNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAE-KVFRQLMKRG-VQDPPSYK 468

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           TLI G CR GK   A EL   M  +   P + TY  LI+GL +      A    + M   
Sbjct: 469 TLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRS 528

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
              P   T+ S++  L K   ++++  L+ +M+ KR R NI   + ++  L    + ++A
Sbjct: 529 SYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQKEKA 588

Query: 316 VEILDRMKLQGLKPDAGLYGK---IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
             I+       L  D G   K   ++   C+  K  +A      +VL  +  +++   + 
Sbjct: 589 FLIVR------LLYDNGYLVKMEELLGYLCENRKLLDAHT----LVLFCLEKSQM---VD 635

Query: 373 IRIHNTVVQGLCKTDPN-RAFQVY 395
           I   NTV++GLCK   +  AF +Y
Sbjct: 636 IDTCNTVIEGLCKHKRHSEAFSLY 659


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 213/427 (49%), Gaps = 26/427 (6%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVFDK 110
           FS ++SK+  +  +     L   +  E C I  D++    +     R  R + A+ V  K
Sbjct: 13  FSKVLSKIAKSKNYDLVISLFHHM--EVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGK 70

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M +FG EP   +  +++    + N++  A      M E+G +P V   N +I   CK  G
Sbjct: 71  MMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK-IG 129

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++ A ++F  M   G   D+ TY +L+ GLC  G+  +A  L ++M  +   P V+T+T
Sbjct: 130 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFT 189

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++I+   +     EAM+L+EEM  + V+P+VFTY+SL++GLC  G   +A ++L +M++K
Sbjct: 190 AVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTK 249

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++VTY+TL+NG CK  ++ E  ++   M  +GL  D   Y  II  +   G+   A
Sbjct: 250 GCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAA 309

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
                 M      PN       IR ++ ++ GLC      +A  ++ +M+   I +D  T
Sbjct: 310 QEIFSRM---DSRPN-------IRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITT 359

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL-----WDR-----RKMR 459
           Y+ +I   CK G++  +  +   L   G  PD  +++ +++       WD+     RKM+
Sbjct: 360 YNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 419

Query: 460 QAAELLL 466
           +   L L
Sbjct: 420 EDGLLPL 426



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 189/369 (51%), Gaps = 15/369 (4%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P+   +  VL+ + +     L    + HM   GI   + S N++I  LC+ S  +  A  
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFV-IALS 66

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  +M   G  PD  T  +LING C+  ++++A +L  +ME     P VV Y ++I+G C
Sbjct: 67  VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 126

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +   V +A+ LF+ M   GV  +  TY+SL+ GLC  G  S A  L++ M+ +   PN++
Sbjct: 127 KIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVI 186

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           T++ +++   KEGK  EA+++ + M  + + PD   Y  +I+  C  G+  EA   LD M
Sbjct: 187 TFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLM 246

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITC 416
           V  G  P+ +T+       NT++ G CK+   +   +++  M  R +  D++TY+++I  
Sbjct: 247 VTKGCLPDVVTY-------NTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 299

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476
           + + G    +  I   +      P+  T+S ++  L    ++ +A  L+L E M K  E 
Sbjct: 300 YFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNWRVEKA--LVLFENMQKS-EI 353

Query: 477 EVDIQNQDV 485
           E+DI   ++
Sbjct: 354 ELDITTYNI 362



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 168/352 (47%), Gaps = 33/352 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  T S +I+     N+   A DL+ ++ +        I+ +I  G  ++    DA
Sbjct: 75  GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 134

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +FD+M+  G      +Y +++A L    +   A R  R M    I P V +   +I  
Sbjct: 135 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDV 194

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G    A K++ EM  R   PD +TY +LINGLC  G++ EAK++   M TK C P
Sbjct: 195 FVK-EGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 253

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV--------------------------- 257
            VVTY +LING C+SK V+E  +LF EM  +G+                           
Sbjct: 254 DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIF 313

Query: 258 -----EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
                 PN+ TYS L+ GLC      +A+ L + M       +I TY+ +++G+CK G +
Sbjct: 314 SRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 373

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           ++A ++   +  +GLKPD   Y  +IS FC   ++ ++     +M   G+ P
Sbjct: 374 EDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 160/359 (44%), Gaps = 33/359 (9%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           V  M K+  +     V  LI      N+     D  +     GFR D   ++ +I     
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
                 A +L DR+ ++        + S+  G     R  DA R+   M      P   +
Sbjct: 128 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 187

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           +  V+ + V+E +   A + Y  M    + P V + N LI  LC + G +D A ++   M
Sbjct: 188 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMH-GRVDEAKQMLDLM 246

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA--------------------- 221
             +GC PD  TY TLING C+  ++ E  +LF+EM  +                      
Sbjct: 247 VTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRP 306

Query: 222 -----------CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
                        P + TY+ L+ GLC +  VE+A+ LFE M+   +E ++ TY+ ++ G
Sbjct: 307 DAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHG 366

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           +CK G    A +L + +  K  +P++V+Y+T+++G C++ +  ++  +  +M+  GL P
Sbjct: 367 MCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 156/265 (58%), Gaps = 1/265 (0%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           VFD + ++G  P+  SY T++   +    L   FR    MR  G+QP V + +VLI  LC
Sbjct: 153 VFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLC 212

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M ++   P +
Sbjct: 213 KES-XMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJ 271

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           +TY +L+ GLC+   + +A  L +EM  KG++P+ FTY++L+DG CK G    A E  + 
Sbjct: 272 ITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKR 331

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPD G Y  II+ FC  G 
Sbjct: 332 MIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGD 391

Query: 347 YQEAANFLDEMVLGGITPNRLTWSL 371
             + +  L EM   G  P  +T+++
Sbjct: 392 VWKGSKLLKEMQRNGHVPXVVTYNV 416



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 174/327 (53%), Gaps = 9/327 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 102 VLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAPLVFDAITKW 160

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 161 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDA 220

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+J+TY+TL+ G
Sbjct: 221 NELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYG 280

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L +A  ++D M  +GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 281 LCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD 340

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            + ++        ++ GLC+   +  A ++   M +  +  D+ TY+ +I  FCKKGD+ 
Sbjct: 341 DVAYT-------ALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVW 393

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTA 451
           K ++++ E+  +G +P   T++ +M  
Sbjct: 394 KGSKLLKEMQRNGHVPXVVTYNVLMNG 420



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 201/429 (46%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++   I  L +   F  A+ L+  V   K             G G       A 
Sbjct: 4   FRHTLHSYCTTIHFLCTHQMFSEAKSLIQVVVSRK-------------GKG------SAX 44

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 45  AVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKV 102

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A  +F  +
Sbjct: 103 LEHLMKLR-----YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAI 157

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   MR+ GV+P+V+TYS L++GLCK    
Sbjct: 158 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXM 217

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 218 DDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTL 277

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           +   C  G   +A   +DEM   G+ P++ T++       T++ G CK  D + AF+   
Sbjct: 278 VYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYT-------TLIDGCCKEGDLDAAFEHRK 330

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD GT++ ++     + 
Sbjct: 331 RMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKG 390

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 391 DVWKGSKLL 399



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 144/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A  + D + K     +   + ++  GY R+    +  R+   M+
Sbjct: 134 FNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMR 193

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+ +  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 194 ASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKN-GRV 252

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TL+ GLC+ G + +A  L  EM  K   P   TYT+L
Sbjct: 253 DLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTL 312

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 313 IDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGL 372

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 373 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMN 419



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 1/203 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M   G  P   ++ T++    +  ++ LA   Y+ M    + P + + N L+
Sbjct: 219 DANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLV 278

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G ++ A  +  EM  +G  PD +TY TLI+G C+ G +  A E  K M  +  
Sbjct: 279 YGLCKK-GDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENI 337

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V YT+LI+GLCQ     +A ++  EM S G++P+  TY+ +++  CK G   +  +
Sbjct: 338 RLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 397

Query: 283 LLQMMISKRHRPNIVTYSTLLNG 305
           LL+ M    H P +VTY+ L+NG
Sbjct: 398 LLKEMQRNGHVPXVVTYNVLMNG 420


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 37/430 (8%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRV--------------------NKEKCDITE 85
           FRH   ++  MI  L +   F  A+ L+  V                      ++ DI  
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIY- 73

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +F  +   Y       DA+  +   +E        +   VL  L++    KL + FY  
Sbjct: 74  -VFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEE 132

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           + E G    +   N+L+   CK+ G +  A  +F  +   G  P   +Y TL+NG  RLG
Sbjct: 133 ILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 191

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + E   L   M      P   TY+ LINGLC+   +++A  LF+EM  KG+ PN  T++
Sbjct: 192 DLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFT 251

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG CK G    AME+ + M+S+   P+++TY+TL+ GLCK+G L++A +++D M ++
Sbjct: 252 TLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMK 311

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GLKPD   Y  +I   C  G    A      M+   I  + + ++        ++ GLC+
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT-------ALISGLCQ 364

Query: 386 ----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
                D  +  +  LS+    +  D+ TY+ +I  FCKKGD+ K +R++ E+  +G +P 
Sbjct: 365 EGRSVDAEKMLREMLSV---GLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPS 421

Query: 442 EGTWSAVMTA 451
             T++ +M  
Sbjct: 422 VVTYNVLMNG 431


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 219/454 (48%), Gaps = 43/454 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ANG   D+ T++ MI  L  A++   A +L + +++ K       + ++  GYG   +  
Sbjct: 298 ANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFE 357

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR--------------- 147
           DA  + ++ +  GC P+  SY  +L+ L  + Q+  A + +  M+               
Sbjct: 358 DAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMID 417

Query: 148 -------------------EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
                              + G+ P V ++N+++  LCK +  +D A  IF  + ++ C 
Sbjct: 418 MLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCK-AQRLDDACSIFEGLDHKTCR 476

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD+ TY +LI GL R G++ EA +L+++M      P  V YTSLI    +    E+  ++
Sbjct: 477 PDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKI 536

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           + EM   G  P++   ++ MD + K G   +   L Q + +    P+  +Y+ L++GL K
Sbjct: 537 YNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVK 596

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G   EA E+   MK QG   D   Y  +I  FC  GK  +A   L+EM   G  P  +T
Sbjct: 597 AGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVT 656

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +        +V+ GL K D  + A+ ++   +++ I ++ + YSSLI  F K G I ++ 
Sbjct: 657 YG-------SVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAY 709

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I++EL+  G  P+  TW+ ++ AL    ++ +A
Sbjct: 710 LIMEELMQKGLTPNVYTWNCLLDALVKAEEISEA 743



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 192/377 (50%), Gaps = 9/377 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ S+ R + +  R  D  +++++M   GC P      T +  + +  +++     ++ +
Sbjct: 516 VYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEI 575

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           + +G  P   S  +LI  L K +G    A+++F  M  +GC  D+  Y T+I+G C+ GK
Sbjct: 576 KNLGFIPDARSYTILIHGLVK-AGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGK 634

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A +L +EM+TK   PTVVTY S+I+GL +   ++EA  LFEE +SKG+E NV  YSS
Sbjct: 635 VNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSS 694

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DG  K G   +A  +++ ++ K   PN+ T++ LL+ L K  ++ EA+     MK   
Sbjct: 695 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLK 754

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             P+   Y  +I   C I K+ +A  F  EM   G  PN  T++       T++ GL K 
Sbjct: 755 CTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYT-------TMISGLAKA 807

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            +   A  ++   + +    DS  Y+++I           + R+ +E  L GC     T 
Sbjct: 808 GNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTC 867

Query: 446 SAVMTALWDRRKMRQAA 462
             ++ +L     + QAA
Sbjct: 868 VVLLDSLHKAECIEQAA 884



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 208/415 (50%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T ++M+ +L  A +   A  + + ++ + C      + S+  G GR  R  +A +++++M
Sbjct: 446 TVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQM 505

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            +    P    Y +++    +  + +   + Y  M  +G  P +  LN  +  + K +G 
Sbjct: 506 LDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFK-AGE 564

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++    +F+E+ N G  PD+ +Y  LI+GL + G  +EA ELF  M+ + C      Y +
Sbjct: 565 IEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNT 624

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+S  V +A +L EEM++KG EP V TY S++DGL K     +A  L +   SK 
Sbjct: 625 VIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG 684

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              N+V YS+L++G  K G++ EA  I++ +  +GL P+   +  ++       +  EA 
Sbjct: 685 IELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEAL 744

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
                M     TPN +T+S+       ++ GLCK    N+AF  +  M+ +    +  TY
Sbjct: 745 VCFQSMKDLKCTPNYITYSI-------LIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTY 797

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I+   K G+I ++  + ++    G + D   ++A++  L +  +   A  L 
Sbjct: 798 TTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLF 852



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/499 (22%), Positives = 227/499 (45%), Gaps = 67/499 (13%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FR   S ++ +I  L ++        L  ++ +    +   +F ++ R + R  R   A+
Sbjct: 196 FRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAAL 255

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            + D+MK    EP    Y   +    +  ++ +A++ +  M+  G+     +   +I  L
Sbjct: 256 SLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVL 315

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK +  ++ A ++F  M      P +Y Y T+I G    GK  +A  L +    K C P+
Sbjct: 316 CK-ADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPS 374

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG---------- 275
           VV+Y  +++ L +   V+EA++ FEEM+   + PN+ TY+ ++D LCK G          
Sbjct: 375 VVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 276 ---------------------CSSQAME----LLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                                C +Q ++    + + +  K  RP+ VTY +L+ GL + G
Sbjct: 434 AMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHG 493

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           ++ EA ++ ++M      P+A +Y  +I  F   G+ ++     +EM+  G +P+ L  +
Sbjct: 494 RVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLN 553

Query: 371 LHI----------------------------RIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
            ++                            R +  ++ GL K    + A++++ +M+ +
Sbjct: 554 TYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQ 613

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              +D+  Y+++I  FCK G ++K+ ++++E+   G  P   T+ +V+  L    ++ +A
Sbjct: 614 GCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEA 673

Query: 462 AELLLLELMNKCVEAEVDI 480
             +L  E  +K +E  V I
Sbjct: 674 Y-MLFEEAKSKGIELNVVI 691



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 190/404 (47%), Gaps = 16/404 (3%)

Query: 62  SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
           + N FR AE L DR +        + + S+     R  +     ++ ++M   G  P+  
Sbjct: 113 AVNYFRWAERLTDRAH------CREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNN 166

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           + I ++   ++  +L+ AF F + MR++  +P  ++   LI AL   S   D    +F++
Sbjct: 167 TCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGAL-STSRDSDCMLTLFQQ 225

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M   G   + + + TLI    R G++  A  L  EM++ +  P VV Y   I+   ++  
Sbjct: 226 MQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGK 285

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V+ A + F EM++ G+  +  TY+S++  LCK    ++A+EL + M   +  P    Y+T
Sbjct: 286 VDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNT 345

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           ++ G    GK ++A  +L+R + +G  P    Y  I+SC    G+  EA    +EM    
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA 405

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           I PN  T+       N ++  LCK      A  V  +M++  +  + +T + ++   CK 
Sbjct: 406 I-PNLSTY-------NIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKA 457

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             +  +  I + L    C PD  T+ +++  L    ++ +A +L
Sbjct: 458 QRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKL 501



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 4/253 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           VNKA  + +    +   G      T+  +I  L   ++   A  L +    +  ++   I
Sbjct: 635 VNKAYQLLEEMKTK---GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVI 691

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+  G+G+V R  +A  + +++ + G  P   ++  +L  LV+  ++  A   ++ M+
Sbjct: 692 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK 751

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           ++   P   + ++LI  LCK     + AF  ++EM  +G  P+ +TY T+I+GL + G I
Sbjct: 752 DLKCTPNYITYSILIHGLCKIR-KFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNI 810

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  LF++ + K        Y ++I GL  +    +A RLFEE R KG      T   L
Sbjct: 811 VEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVL 870

Query: 268 MDGLCKGGCSSQA 280
           +D L K  C  QA
Sbjct: 871 LDSLHKAECIEQA 883



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 112/286 (39%), Gaps = 41/286 (14%)

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
            Y +L+  + R  K    +++ +EM      P+  T   ++    +S+ + EA    + M
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           R     P    Y++L+  L     S   + L Q M    +  N+  ++TL+    +EG++
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
             A+ +LD MK   L+PD  LY   I CF   GK                          
Sbjct: 252 DAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKV------------------------- 286

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
                           + A++ +  M+   + +D +TY+S+I   CK   ++++  + + 
Sbjct: 287 ----------------DMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEH 330

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +  +  +P    ++ ++       K   A  LL  +    C+ + V
Sbjct: 331 MDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVV 376


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 175/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   ++ A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 292 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D+ TY+ ++  FCKKG
Sbjct: 352 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPDTGTYTMIVNEFCKKG 401

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG  P   T++ +M  
Sbjct: 402 DVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 158/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A  +F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++  
Sbjct: 221 GLCKES-KMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+ FTY++L+DG CK G    A E 
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPD G Y  I++ FC 
Sbjct: 340 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGSKLLKEMQRDGHAPSVVTYNV 427



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 203/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L++ V   K             G G       A 
Sbjct: 15  FRHTLHSYCTMIHFLCTHQLLSEAKSLIEVVVSRK-------------GKG------SAS 55

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   +   +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 56  AVFAAVLE--TKGNQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKV 113

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 114 LEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A  L   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 229 DGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P++ T++       T++ G CK  D + AF+   
Sbjct: 289 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYT-------TLIDGCCKEGDLDTAFEHRK 341

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD GT++ ++     + 
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKG 401

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 402 DVWKGSKLL 410



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 146/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TLI GLC+ G + +A +L  EM  K   P   TYT+L
Sbjct: 264 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 384 KPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMN 430



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 126/271 (46%), Gaps = 36/271 (13%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           F   +A  A+G + D  T+S++I+ L   ++   A  L                      
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGL---------------------- 234

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
                        FD+M   G  P   ++ T++    +  ++ LA   Y+ M    + P 
Sbjct: 235 -------------FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + + N LI  LCK  G +  A  +  EM  +G  PD +TY TLI+G C+ G +  A E  
Sbjct: 282 LITYNTLIYGLCKK-GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHR 340

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           K M  +      V YT+LI+GLCQ     +A ++  EM S G++P+  TY+ +++  CK 
Sbjct: 341 KRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKK 400

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           G   +  +LL+ M    H P++VTY+ L+NG
Sbjct: 401 GDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/442 (28%), Positives = 212/442 (47%), Gaps = 37/442 (8%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICRGYGRVHRP----L 102
           S F+ ++    +A  +  A  L +R+N   C    +  +IF+ SIC   GR   P    L
Sbjct: 342 SLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSIC---GREELPNPELL 398

Query: 103 D-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           D A +V+++M    C     +       L    + + AF+  + M   G  P  ++   +
Sbjct: 399 DLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKV 458

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I  LC+ +  +D AF +F+EM   G  PD YTY  LI+  C+ G I +A+  F EM +  
Sbjct: 459 ITFLCQ-AKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAG 517

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           CSP VVTYT+L++   +SK + +A  +F  M      PN  TYS+L+DGLCK G   +A 
Sbjct: 518 CSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKAC 577

Query: 282 ELLQMMISKRHR----------------PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           E+   +I                     PN+VTY  L+NGLCK  K+ +A ++LD M   
Sbjct: 578 EVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAA 637

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G +P+  +Y  ++  FC +G+   A      M   G  P+       +  + +++  + K
Sbjct: 638 GCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPS-------VHTYTSLIDRMFK 690

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               + A +V   M   S + + +TY++++   CK G+  K+  ++  +   GC P+  T
Sbjct: 691 DGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVT 750

Query: 445 WSAVMTALWDRRKMRQAAELLL 466
           ++A++  L    K+    EL +
Sbjct: 751 YTALIDGLGKAGKVDAGLELFM 772



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 222/455 (48%), Gaps = 39/455 (8%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           N +  +  T+  +++  +   Q    + +++ +  E C+ +  +F S+   Y        
Sbjct: 300 NSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAY 359

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQL------KLAFRFYRHMREIGIQPCVAS 157
           A ++F++M   GC P    Y   +  +    +L       LA + Y  M    +  CV +
Sbjct: 360 AYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEML---VASCVLN 416

Query: 158 -LNV--LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
            +N     + LC   G  + AF+I +EM  +G  PD+ TY  +I  LC+  ++ +A  LF
Sbjct: 417 KINTANFARCLC-GVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLF 475

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           +EM+    +P V TYT LI+  C++  +E+A   F+EMRS G  PNV TY++L+    K 
Sbjct: 476 QEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKS 535

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-----------K 323
               QA ++   M+     PN +TYS L++GLCK G++Q+A E+  ++            
Sbjct: 536 KQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFY 595

Query: 324 LQG-----LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
            +G     + P+   YG +++  C   K  +A + LD M+  G  PN++       +++ 
Sbjct: 596 FEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQI-------VYDA 648

Query: 379 VVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           +V G CK  + + A +V+L M          TY+SLI    K G +  + +++ +++ D 
Sbjct: 649 LVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 708

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           C P+  T++A++  L    +  +A  L LL LM K
Sbjct: 709 CNPNVVTYTAMVDGLCKTGETEKA--LNLLSLMEK 741



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 127/506 (25%), Positives = 220/506 (43%), Gaps = 68/506 (13%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T  +V+  +   K V+KA ++F         G   D  T++++I     A     A+   
Sbjct: 454 TYTKVITFLCQAKRVDKAFLLFQEMKKV---GVNPDVYTYTILIDSFCKAGLIEQAQSWF 510

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           D +    C      + ++   Y +  +   A  +F +M    C P   +Y  ++  L + 
Sbjct: 511 DEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKA 570

Query: 134 NQLKLAFRFYRHMREIG------------------IQPCVASLNVLIKALCKNSGTMDAA 175
            +++ A   Y  +  IG                  I P V +   L+  LCK     DA 
Sbjct: 571 GEIQKACEVYAKL--IGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDA- 627

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             +   M   GC P+   Y  L++G C++G+I  A+E+F  M      P+V TYTSLI+ 
Sbjct: 628 HDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDR 687

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           + +   ++ AM++  +M      PNV TY++++DGLCK G + +A+ LL +M  K   PN
Sbjct: 688 MFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPN 747

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +VTY+ L++GL K GK+   +E+  +MK +G  P+   Y  +I+  C  G   +A   LD
Sbjct: 748 VVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLD 807

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK----------------TDP----------- 388
           EM        +  W  +++ + T VQG  K                T P           
Sbjct: 808 EM-------KQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYGMLIDS 860

Query: 389 -------NRAFQVYLSMRNRSISVDSLT---YSSLITCFCKKGDIHKSARIVDELVLDGC 438
                    A +++  M   S S++  +   ++SLI   C    + ++  +  E+   G 
Sbjct: 861 FSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGI 920

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAEL 464
           +PD   +  ++  L +R K  +A +L
Sbjct: 921 VPDLSAFVCLVKGLIERNKWNEALQL 946



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 105/464 (22%), Positives = 197/464 (42%), Gaps = 47/464 (10%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99
           AE   G++H  + +  +   L   +  R AE LL  + ++  D+   +   + R      
Sbjct: 124 AERQVGYKHTGACYDALAEVLGFEDPARTAERLLREIGEDDRDVLGRLLNVLVRRCCLQG 183

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
              +A+    ++K+FG  P+  +Y  ++ +L    Q+++AFR  + M   G     +++ 
Sbjct: 184 LWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVG 243

Query: 160 VLIKALCKN--------------------------SGTMDA-----AFKIFREMPNRGCT 188
              +ALCK                           SG M+A     A      M      
Sbjct: 244 SFAQALCKEGRWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYI 303

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  TY TL+ G  +  ++   K +   M T+ C+P+   + SL++  C ++    A +L
Sbjct: 304 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKL 363

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM-------MISKRHRPNIVTYST 301
           F  M + G  P    Y+  +  +C G       ELL +       M+      N +  + 
Sbjct: 364 FNRMNTCGCPPGYVVYNIFIGSIC-GREELPNPELLDLAEKVYEEMLVASCVLNKINTAN 422

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
               LC  GK ++A +I+  M  +G  PDA  Y K+I+  C   +  +A     EM   G
Sbjct: 423 FARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVG 482

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKK 420
           + P+  T+++       ++   CK       Q +   MR+   S + +TY++L+  + K 
Sbjct: 483 VNPDVYTYTI-------LIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKS 535

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             ++++  I   +V D C P+  T+SA++  L    ++++A E+
Sbjct: 536 KQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEV 579



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 162/392 (41%), Gaps = 58/392 (14%)

Query: 125 TVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
            V+A+L      +L  RF+    R++G +   A  + L + L    G  D A    R + 
Sbjct: 103 VVVAVLGAVRSPELCVRFFLWAERQVGYKHTGACYDALAEVL----GFEDPARTAERLLR 158

Query: 184 NRGCTPDSYTYGTLINGL----CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             G   D    G L+N L    C  G   EA E    ++     P+ VTY +L+  L  +
Sbjct: 159 EIG-EDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASA 217

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG--------------------CS-- 277
             VE A R+ +EM + G   +  T  S    LCK G                    C+  
Sbjct: 218 GQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDLLEREDFKLDTVLCTQM 277

Query: 278 ----------SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
                     ++AM  L  M    + PN+VTY TLL G  K+ +L     I++ M  +G 
Sbjct: 278 ISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGC 337

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            P   L+  ++  +C+   Y  A    + M   G  P  +       ++N  +  +C  +
Sbjct: 338 NPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYV-------VYNIFIGSICGRE 390

Query: 388 --PNR-----AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
             PN      A +VY  M   S  ++ +  ++   C C  G   K+ +IV E++  G +P
Sbjct: 391 ELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVP 450

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           D  T++ V+T L   +++ +A   LL + M K
Sbjct: 451 DASTYTKVITFLCQAKRVDKA--FLLFQEMKK 480



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 49/249 (19%), Positives = 96/249 (38%), Gaps = 39/249 (15%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ M+  L    +   A +LL  + K+ C      + ++  G G+  +    + +F +M
Sbjct: 715 TYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQM 774

Query: 112 KEFGCEPTPKSYITVL---------------AILVEENQLKLAFRFYR------------ 144
           K  GC P   +Y  ++                  +++       + YR            
Sbjct: 775 KTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLA 834

Query: 145 ------HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT---YG 195
                  M      P      +LI +  K +G ++ A ++ +EM     + +  +   + 
Sbjct: 835 SLGLLEEMESHDTAPIAPVYGMLIDSFSK-AGRLETALELHKEMMEVSSSLNMASKDMHT 893

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           +LI  LC   ++ EA  L+ EM  +   P +  +  L+ GL +     EA++L   +  +
Sbjct: 894 SLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQE 953

Query: 256 GV--EPNVF 262
           GV  E N F
Sbjct: 954 GVNWEGNKF 962


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 224/489 (45%), Gaps = 50/489 (10%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +L+ +       +A+ + D   A+   G   +  T++++I+ +    +   A + 
Sbjct: 181 VTYTVLLEAVCKSTGFGQAMEVLDEMRAK---GCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L+R++          + ++ +G     R  D   +F +M E  C P   ++  ++     
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              ++ A +    M   G        N++I  +CK  G +D AF+    M + GC+PD+ 
Sbjct: 298 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK-QGRVDDAFQFLNNMGSYGCSPDTI 356

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           +Y T++ GLCR  +  +AKEL KEM  K C P  VT+ + I  LCQ   +E+A  L E+M
Sbjct: 357 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 416

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
              G E N+ TY++L++G C  G    A+EL   M  K   PN +TY+TLL GLC   +L
Sbjct: 417 SEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERL 473

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
             A E+L  M  +   P+   +  ++S FC  G   EA   +++M+  G TPN +T+   
Sbjct: 474 DAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITY--- 530

Query: 373 IRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLIT---------------- 415
               NT++ G+    +   A ++   + +  +S D +TYSS+I                 
Sbjct: 531 ----NTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFH 586

Query: 416 -------------------CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
                                CK+ +   +      +V +GC+P+E T+  ++  L +  
Sbjct: 587 IVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANED 646

Query: 457 KMRQAAELL 465
            +++  +LL
Sbjct: 647 FLKETRDLL 655



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 222/465 (47%), Gaps = 19/465 (4%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           S    +A++ +LI A  D+ +A  + D AT+    G   D    + +I  L    +   A
Sbjct: 42  SPNPANARLRRLI-ARDDLAEAARLVDRATSR---GEAPDVYLCTKLIRNLCRRGRTSDA 97

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
             +L    +    +    + ++  GY R +  LDA R    +      P   +Y  ++  
Sbjct: 98  ARVLRAAERSGTAVDVFAYNTLVAGYCR-YGQLDAARRL--IASMPVAPDAYTYTPIIRG 154

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L +  ++  A      M   G QP V +  VL++A+CK++G    A ++  EM  +GCTP
Sbjct: 155 LCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG-FGQAMEVLDEMRAKGCTP 213

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           +  TY  +ING+CR G++ +A+E    + +    P  V+YT+++ GLC +K  E+   LF
Sbjct: 214 NIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELF 273

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            EM  K   PN  T+  L+   C+GG   +A+++L+ M       N    + ++N +CK+
Sbjct: 274 AEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ 333

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G++ +A + L+ M   G  PD   Y  ++   C   ++++A   L EMV     PN +T+
Sbjct: 334 GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTF 393

Query: 370 SLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                  NT +  LC K    +A  +   M      V+ +TY++L+  FC +G +  +  
Sbjct: 394 -------NTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           +   +    C P+  T++ ++T L +  ++  AAELL   L   C
Sbjct: 447 LFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDC 488



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 174/361 (48%), Gaps = 12/361 (3%)

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           +P      L  L+  + L  A R        G  P V     LI+ LC+   T DAA ++
Sbjct: 42  SPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAA-RV 100

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
            R     G   D + Y TL+ G CR G++  A+ L   M     +P   TYT +I GLC 
Sbjct: 101 LRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPV---APDAYTYTPIIRGLCD 157

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
              V EA+ L ++M  +G +P+V TY+ L++ +CK     QAME+L  M +K   PNIVT
Sbjct: 158 RGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVT 217

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y+ ++NG+C+EG++ +A E L+R+   G +PD   Y  ++   C   ++++      EM+
Sbjct: 218 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 277

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
                PN +T+ + +R         C+     RA QV   M     + ++   + +I   
Sbjct: 278 EKNCMPNEVTFDMLVRF-------FCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 330

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           CK+G +  + + ++ +   GC PD  +++ V+  L    +   A ELL   +   C   E
Sbjct: 331 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 390

Query: 478 V 478
           V
Sbjct: 391 V 391



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 209/424 (49%), Gaps = 24/424 (5%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICR--GYGRVHRPL 102
           D  T++ +I  L    +   A  LLD +    C    +T  + L ++C+  G+G+     
Sbjct: 144 DAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQ----- 198

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            AM V D+M+  GC P   +Y  ++  +  E ++  A  F   +   G QP   S   ++
Sbjct: 199 -AMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 257

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K LC      D   ++F EM  + C P+  T+  L+   CR G +  A ++ ++M    C
Sbjct: 258 KGLCAAKRWEDVE-ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGC 316

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +        +IN +C+   V++A +    M S G  P+  +Y++++ GLC+      A E
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKE 376

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+ K   PN VT++T +  LC++G +++A  ++++M   G + +   Y  +++ FC
Sbjct: 377 LLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC 436

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G+   A      M      PN +T++       T++ GLC  +  + A ++   M  +
Sbjct: 437 VQGRVDSALELFYSM---PCKPNTITYT-------TLLTGLCNAERLDAAAELLAEMLQK 486

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             + + +T++ L++ FC+KG + ++  +V++++  GC P+  T++ ++  + +     +A
Sbjct: 487 DCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEA 546

Query: 462 AELL 465
            ELL
Sbjct: 547 LELL 550



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 160/340 (47%), Gaps = 10/340 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G   D  +++ ++  L  A ++  A++LL  + ++ C   ++T + F+ I    G + + 
Sbjct: 350 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQ- 408

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A  + ++M E GCE    +Y  ++     + ++  A   +  M     +P   +   L
Sbjct: 409 --ATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTL 463

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LC N+  +DAA ++  EM  + C P+  T+  L++  C+ G + EA EL ++M    
Sbjct: 464 LTGLC-NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C+P ++TY +L++G+    + EEA+ L   + S GV P++ TYSS++  L +     +A+
Sbjct: 523 CTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 582

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++  ++     RP  V Y+ +L  LCK      A++    M   G  P+   Y  +I   
Sbjct: 583 KMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL 642

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
            +    +E  + L E+   G+    L      +  N  V 
Sbjct: 643 ANEDFLKETRDLLRELCSRGVLNKNLLEEWRPKFSNKTVH 682


>gi|255548031|ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545552|gb|EEF47056.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 230/454 (50%), Gaps = 18/454 (3%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           +W   +T   + Q+IR +K+   AL IF  A  +Y N +RH+   ++ MI  L S+ +  
Sbjct: 4   RWPRLLTPTHLSQIIRNQKNPLIALRIFKEAKDKYPN-YRHNGPVYATMIGILGSSGRIT 62

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
             +++LD++ ++ C+  + IF +  + Y RV    +A+ +F  + +F C    +S+ T+L
Sbjct: 63  EMKEVLDQMREDSCECKDSIFANAIKTYARVGLLNEAISLFKNIPQFNCVNWTESFNTLL 122

Query: 128 AILVEENQLKLAFR-FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
            I+V+E++L+ A R F        ++  V SLN+L+  LC+++ + D A ++F+EM  +G
Sbjct: 123 QIMVKESKLEAAHRLFLESSYGWEVKSRVRSLNLLMDVLCQHNRS-DVALQVFQEMNYQG 181

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKEL----FKEMETKACSPTVVTYTSLINGLCQSKSV 242
           C PD  +Y  ++ GLC+ G++ EA  L    F  +  K     +V Y   ++ LC    V
Sbjct: 182 CYPDRDSYRIVMMGLCKDGRLNEATHLLYSMFWRISQKGSGEDIVIYRIFLDALCDIGMV 241

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG-GCSSQAMELLQMMISKRHRPNIVTYST 301
           E+A+ +  ++  KG++     +  L    C   G       L+   + +   P++ +Y+ 
Sbjct: 242 EQALEVLGKILRKGLKAPKRCHPRLDLSNCNSDGNIETTKHLINEALIRGAIPSLSSYTA 301

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD-EMVLG 360
           +      EGKL +A ++LD  + +G +P    Y   ++  C  GK  EA N L+ EMV G
Sbjct: 302 MAVDFYAEGKLSQADKVLDETQDRGFRPSLLTYEAKVAALCKEGKVHEAINVLEVEMVEG 361

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS--MRNRSISVDSLTYSSLITCFC 418
              PN       +R++N +++GLC    +     YL    +      +  TY  L+   C
Sbjct: 362 NCVPN-------VRLYNILLKGLCDARNSATAVKYLKRMAKQTGCVANKETYCILVHGLC 414

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           + G   +++RI++E+++    P   T++ ++  L
Sbjct: 415 QDGGFIEASRILEEMLIKSYWPPVDTFNMLIRGL 448



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 2/175 (1%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK-EMETKACSPTVVT 228
           G +  A K+  E  +RG  P   TY   +  LC+ GK++EA  + + EM    C P V  
Sbjct: 310 GKLSQADKVLDETQDRGFRPSLLTYEAKVAALCKEGKVHEAINVLEVEMVEGNCVPNVRL 369

Query: 229 YTSLINGLCQSKSVEEAMRLFEEM-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           Y  L+ GLC +++   A++  + M +  G   N  TY  L+ GLC+ G   +A  +L+ M
Sbjct: 370 YNILLKGLCDARNSATAVKYLKRMAKQTGCVANKETYCILVHGLCQDGGFIEASRILEEM 429

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + K + P + T++ L+ GLC  G+  EA   L+ M      P+  ++  +++C C
Sbjct: 430 LIKSYWPPVDTFNMLIRGLCSIGRQYEATMWLEEMISLDEAPELSVWNSLVTCLC 484



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 1/194 (0%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           G  P+  SY  +      E +L  A +     ++ G +P + +    + ALCK     +A
Sbjct: 291 GAIPSLSSYTAMAVDFYAEGKLSQADKVLDETQDRGFRPSLLTYEAKVAALCKEGKVHEA 350

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLI 233
              +  EM    C P+   Y  L+ GLC       A +  K M  +  C     TY  L+
Sbjct: 351 INVLEVEMVEGNCVPNVRLYNILLKGLCDARNSATAVKYLKRMAKQTGCVANKETYCILV 410

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +GLCQ     EA R+ EEM  K   P V T++ L+ GLC  G   +A   L+ MIS    
Sbjct: 411 HGLCQDGGFIEASRILEEMLIKSYWPPVDTFNMLIRGLCSIGRQYEATMWLEEMISLDEA 470

Query: 294 PNIVTYSTLLNGLC 307
           P +  +++L+  LC
Sbjct: 471 PELSVWNSLVTCLC 484



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 80/170 (47%), Gaps = 1/170 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR-HMREIGIQPCVASLNVLI 162
           A +V D+ ++ G  P+  +Y   +A L +E ++  A       M E    P V   N+L+
Sbjct: 315 ADKVLDETQDRGFRPSLLTYEAKVAALCKEGKVHEAINVLEVEMVEGNCVPNVRLYNILL 374

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K LC    +  A   + R     GC  +  TY  L++GLC+ G   EA  + +EM  K+ 
Sbjct: 375 KGLCDARNSATAVKYLKRMAKQTGCVANKETYCILVHGLCQDGGFIEASRILEEMLIKSY 434

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            P V T+  LI GLC      EA    EEM S    P +  ++SL+  LC
Sbjct: 435 WPPVDTFNMLIRGLCSIGRQYEATMWLEEMISLDEAPELSVWNSLVTCLC 484



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 15/199 (7%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVN----KEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           S+++ M     +  +   A+ +LD       +      E    ++C+  G+VH  ++ + 
Sbjct: 297 SSYTAMAVDFYAEGKLSQADKVLDETQDRGFRPSLLTYEAKVAALCKE-GKVHEAINVLE 355

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLN---VLI 162
           V  +M E  C P  + Y  +L  L +      A ++ + M ++ G   CVA+     +L+
Sbjct: 356 V--EMVEGNCVPNVRLYNILLKGLCDARNSATAVKYLKRMAKQTG---CVANKETYCILV 410

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC++ G ++A+ +I  EM  +   P   T+  LI GLC +G+ YEA    +EM +   
Sbjct: 411 HGLCQDGGFIEAS-RILEEMLIKSYWPPVDTFNMLIRGLCSIGRQYEATMWLEEMISLDE 469

Query: 223 SPTVVTYTSLINGLCQSKS 241
           +P +  + SL+  LC + +
Sbjct: 470 APELSVWNSLVTCLCSNTA 488


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 219/454 (48%), Gaps = 43/454 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ANG   D+ T++ MI  L  A++   A +L + +++ K       + ++  GYG   +  
Sbjct: 298 ANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFE 357

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR--------------- 147
           DA  + ++ +  GC P+  SY  +L+ L  + Q+  A + +  M+               
Sbjct: 358 DAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMID 417

Query: 148 -------------------EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
                              + G+ P V ++N+++  LCK +  +D A  IF  + ++ C 
Sbjct: 418 MLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCK-AQRLDDACSIFEGLDHKTCR 476

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD+ TY +LI GL R G++ EA +L+++M      P  V YTSLI    +    E+  ++
Sbjct: 477 PDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKI 536

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           + EM   G  P++   ++ MD + K G   +   L Q + +    P+  +Y+ L++GL K
Sbjct: 537 YNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVK 596

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G   EA E+   MK QG   D   Y  +I  FC  GK  +A   L+EM   G  P  +T
Sbjct: 597 AGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVT 656

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +        +V+ GL K D  + A+ ++   +++ I ++ + YSSLI  F K G I ++ 
Sbjct: 657 YG-------SVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAY 709

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I++EL+  G  P+  TW+ ++ AL    ++ +A
Sbjct: 710 LIMEELMQKGLTPNVYTWNCLLDALVKAEEISEA 743



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 192/377 (50%), Gaps = 9/377 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ S+ R + +  R  D  +++++M   GC P      T +  + +  +++     ++ +
Sbjct: 516 VYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEI 575

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           + +G  P   S  +LI  L K +G    A+++F  M  +GC  D+  Y T+I+G C+ GK
Sbjct: 576 KNLGFIPDARSYTILIHGLVK-AGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGK 634

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A +L +EM+TK   PTVVTY S+I+GL +   ++EA  LFEE +SKG+E NV  YSS
Sbjct: 635 VNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSS 694

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DG  K G   +A  +++ ++ K   PN+ T++ LL+ L K  ++ EA+     MK   
Sbjct: 695 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLK 754

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             P+   Y  +I   C I K+ +A  F  EM   G  PN  T++       T++ GL K 
Sbjct: 755 CTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYT-------TMISGLAKA 807

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            +   A  ++   + +    DS  Y+++I           + R+ +E  L GC     T 
Sbjct: 808 GNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTC 867

Query: 446 SAVMTALWDRRKMRQAA 462
             ++ +L     + QAA
Sbjct: 868 VVLLDSLHKAECIEQAA 884



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 208/415 (50%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T ++M+ +L  A +   A  + + ++ + C      + S+  G GR  R  +A +++++M
Sbjct: 446 TVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQM 505

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            +    P    Y +++    +  + +   + Y  M  +G  P +  LN  +  + K +G 
Sbjct: 506 LDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFK-AGE 564

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++    +F+E+ N G  PD+ +Y  LI+GL + G  +EA ELF  M+ + C      Y +
Sbjct: 565 IEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNT 624

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+G C+S  V +A +L EEM++KG EP V TY S++DGL K     +A  L +   SK 
Sbjct: 625 VIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG 684

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              N+V YS+L++G  K G++ EA  I++ +  +GL P+   +  ++       +  EA 
Sbjct: 685 IELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEAL 744

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
                M     TPN +T+S+       ++ GLCK    N+AF  +  M+ +    +  TY
Sbjct: 745 VCFQSMKDLKCTPNYITYSI-------LIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTY 797

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I+   K G+I ++  + ++    G + D   ++A++  L +  +   A  L 
Sbjct: 798 TTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLF 852



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 228/499 (45%), Gaps = 67/499 (13%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FR   S ++ +I  L ++        L  ++ +    +   +F ++ R + R  R   A+
Sbjct: 196 FRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAAL 255

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            + D+MK    EP    Y   +    +  ++ +A++F+  M+  G+     +   +I  L
Sbjct: 256 SLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVL 315

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK +  ++ A ++F  M      P +Y Y T+I G    GK  +A  L +    K C P+
Sbjct: 316 CK-ADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPS 374

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG---------- 275
           VV+Y  +++ L +   V+EA++ FEEM+   + PN+ TY+ ++D LCK G          
Sbjct: 375 VVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 276 ---------------------CSSQAME----LLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                                C +Q ++    + + +  K  RP+ VTY +L+ GL + G
Sbjct: 434 AMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHG 493

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           ++ EA ++ ++M      P+A +Y  +I  F   G+ ++     +EM+  G +P+ L  +
Sbjct: 494 RVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLN 553

Query: 371 LHI----------------------------RIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
            ++                            R +  ++ GL K    + A++++ +M+ +
Sbjct: 554 TYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQ 613

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              +D+  Y+++I  FCK G ++K+ ++++E+   G  P   T+ +V+  L    ++ +A
Sbjct: 614 GCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEA 673

Query: 462 AELLLLELMNKCVEAEVDI 480
             +L  E  +K +E  V I
Sbjct: 674 Y-MLFEEAKSKGIELNVVI 691



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 192/404 (47%), Gaps = 16/404 (3%)

Query: 62  SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
           + N FR AE L DR +  +   +  + ++  R +  + + L+ M +       G  P+  
Sbjct: 113 AVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIA------GFGPSNN 166

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           + I ++   ++  +L+ AF F + MR++  +P  ++   LI AL   S   D    +F++
Sbjct: 167 TCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGAL-STSRDSDCMLTLFQQ 225

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M   G   + + + TLI    R G++  A  L  EM++ +  P VV Y   I+   ++  
Sbjct: 226 MQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGK 285

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V+ A + F EM++ G+  +  TY+S++  LCK    ++A+EL + M   +  P    Y+T
Sbjct: 286 VDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNT 345

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           ++ G    GK ++A  +L+R + +G  P    Y  I+SC    G+  EA    +EM    
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA 405

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           I PN  T+       N ++  LCK      A  V  +M++  +  + +T + ++   CK 
Sbjct: 406 I-PNLSTY-------NIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKA 457

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             +  +  I + L    C PD  T+ +++  L    ++ +A +L
Sbjct: 458 QRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKL 501



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 4/253 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           VNKA  + +    +   G      T+  +I  L   ++   A  L +    +  ++   I
Sbjct: 635 VNKAYQLLEEMKTK---GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVI 691

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+  G+G+V R  +A  + +++ + G  P   ++  +L  LV+  ++  A   ++ M+
Sbjct: 692 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK 751

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           ++   P   + ++LI  LCK     + AF  ++EM  +G  P+ +TY T+I+GL + G I
Sbjct: 752 DLKCTPNYITYSILIHGLCKIR-KFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNI 810

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  LF++ + K        Y ++I GL  +    +A RLFEE R KG      T   L
Sbjct: 811 VEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVL 870

Query: 268 MDGLCKGGCSSQA 280
           +D L K  C  QA
Sbjct: 871 LDSLHKAECIEQA 883



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 110/286 (38%), Gaps = 41/286 (14%)

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
            Y +L+  + R  K    +++ +EM      P+  T   ++    +S+ + EA    + M
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           R     P    Y++L+  L     S   + L Q M    +  N+  ++TL+    +EG++
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
             A+ +LD MK   L+PD  LY   I CF   GK   A  F  EM   G+          
Sbjct: 252 DAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLV--------- 302

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
                                           +D +TY+S+I   CK   ++++  + + 
Sbjct: 303 --------------------------------LDDVTYTSMIGVLCKADRLNEAVELFEH 330

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +  +  +P    ++ ++       K   A  LL  +    C+ + V
Sbjct: 331 MDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVV 376


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 188/361 (52%), Gaps = 9/361 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              V  K+ + G +P   ++ T++  L  + Q+  A  F+  +   GI+    S   LI 
Sbjct: 113 GFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLIN 172

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +CK  G    A K+ R++  R   P+   Y T+I+ LC+   + EA  LF EM  K  S
Sbjct: 173 GVCK-IGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGIS 231

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VVTYT+LI G C +  ++EA+ L  EM  K + PNV+TY+ L+D LCK G   +A  +
Sbjct: 232 ADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNV 291

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+    +P+++TYSTL++G     +L++A  + + M L G+ PD   Y  +I+ FC 
Sbjct: 292 LAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCK 351

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
                EA N   EM    + P  +T+S       +++ GLCK+   +  + +   MR+R 
Sbjct: 352 NKMVDEALNLFKEMHQKNMVPGIVTYS-------SLIDGLCKSGRISYVWDLIDEMRDRG 404

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  + +TY+SLI   CK G + ++  + +++   G  P   T++ ++  L    +++ A 
Sbjct: 405 IPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQ 464

Query: 463 E 463
           E
Sbjct: 465 E 465



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 207/425 (48%), Gaps = 15/425 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++    TF+ +I  L    Q   A    D++  +     +  + ++  G  ++     A
Sbjct: 124 GYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGA 183

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  K+     +P  + Y T++  L +   +  A+  +  M   GI   V +   LI  
Sbjct: 184 IKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYG 243

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C  S  +  A  +  EM  +   P+ YTY  L++ LC+ GK+ EAK +   M      P
Sbjct: 244 FCIAS-KLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKP 302

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V+TY++L++G      +++A  +F  M   GV P+V +Y+ L++G CK     +A+ L 
Sbjct: 303 DVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLF 362

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P IVTYS+L++GLCK G++    +++D M+ +G+  +   Y  +I   C  
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKN 422

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRN 400
           G    A    ++M   GI P   T+++       ++ GLCK     D   AFQ  L+   
Sbjct: 423 GHLDRAIALFNKMKDQGIRPCSFTFTI-------LLDGLCKGGRLKDAQEAFQDLLT--- 472

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +   +D   Y+ +I   CK+G + ++  ++ ++  +GC+P+  T+  ++ AL+ + +  +
Sbjct: 473 KGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDK 532

Query: 461 AAELL 465
           A +LL
Sbjct: 533 AEKLL 537



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 188/411 (45%), Gaps = 44/411 (10%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++ +  +  VNKAL   D   A+   G + D  ++  +I+ +      R A  L
Sbjct: 130 ITFTTLIKGLCLKGQVNKALHFHDKLLAQ---GIKFDQVSYGTLINGVCKIGDTRGAIKL 186

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           + +++        +++ +I     +     +A  +F +M   G      +Y T++     
Sbjct: 187 VRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCI 246

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN------------------------ 168
            ++LK A      M    I P V + N+L+ ALCK                         
Sbjct: 247 ASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVIT 306

Query: 169 -SGTMDAAF---------KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
            S  MD  F          +F  M   G TPD ++Y  LING C+   + EA  LFKEM 
Sbjct: 307 YSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMH 366

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            K   P +VTY+SLI+GLC+S  +     L +EMR +G+  NV TY+SL+DGLCK G   
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLD 426

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A+ L   M  +  RP   T++ LL+GLCK G+L++A E    +  +G   D   Y  +I
Sbjct: 427 RAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMI 486

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
           +  C  G  +EA   L +M   G  PN +T+ +       ++  L K D N
Sbjct: 487 NGHCKQGLLEEALTMLSKMEENGCVPNAVTFDI-------IINALFKKDEN 530



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 178/338 (52%), Gaps = 10/338 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---IT 84
           V++A  +F   TA+   G   D  T++ +I     A++ + A  LL+ +  +  +    T
Sbjct: 215 VSEAYGLFSEMTAK---GISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYT 271

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            +I +      G+V    +A  V   M +   +P   +Y T++       +LK A   + 
Sbjct: 272 YNILVDALCKEGKVK---EAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFN 328

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M  +G+ P V S  +LI   CKN   +D A  +F+EM  +   P   TY +LI+GLC+ 
Sbjct: 329 AMSLMGVTPDVHSYTILINGFCKNK-MVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G+I    +L  EM  +     V+TY SLI+GLC++  ++ A+ LF +M+ +G+ P  FT+
Sbjct: 388 GRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTF 447

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + L+DGLCKGG    A E  Q +++K +  ++  Y+ ++NG CK+G L+EA+ +L +M+ 
Sbjct: 448 TILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEE 507

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
            G  P+A  +  II+      +  +A   L +M+  G+
Sbjct: 508 NGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGL 545



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 181/392 (46%), Gaps = 30/392 (7%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F++M      P    +  +L    +      A      +   GIQP + +LN+LI
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C + G +   F +  ++  RG  P + T+ TLI GLC  G++ +A     ++  +  
Sbjct: 102 NCFC-HMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGI 160

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V+Y +LING+C+      A++L  ++  +  +PNV  Y++++D LCK    S+A  
Sbjct: 161 KFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYG 220

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M +K    ++VTY+TL+ G C   KL+EA+ +L+ M L+ + P+   Y  ++   C
Sbjct: 221 LFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALC 280

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSL----------------------------HIR 374
             GK +EA N L  M+   + P+ +T+S                              + 
Sbjct: 281 KEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVH 340

Query: 375 IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            +  ++ G CK    + A  ++  M  +++    +TYSSLI   CK G I     ++DE+
Sbjct: 341 SYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEM 400

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              G   +  T+++++  L     + +A  L 
Sbjct: 401 RDRGIPANVITYNSLIDGLCKNGHLDRAIALF 432



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 143/296 (48%), Gaps = 10/296 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A   F  M     TP    +  +++   ++     A  L   +E K   P ++T   
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C    +     +  ++  +G +P+  T+++L+ GLC  G  ++A+     ++++ 
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 159

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            + + V+Y TL+NG+CK G  + A++++ ++  +  KP+  +Y  II   C      EA 
Sbjct: 160 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAY 219

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTY 410
               EM   GI+ + +T++       T++ G C  +    A  +   M  ++I+ +  TY
Sbjct: 220 GLFSEMTAKGISADVVTYT-------TLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTY 272

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCL-PDEGTWSAVMTALWDRRKMRQAAELL 465
           + L+   CK+G + K A+ V  ++L  C+ PD  T+S +M   +   ++++A  + 
Sbjct: 273 NILVDALCKEGKV-KEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVF 327


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 175/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 152

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   ++ A
Sbjct: 153 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGA 212

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 213 NGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 272

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 273 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 332

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D+ TY+ ++  FCKKG
Sbjct: 333 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPDTGTYTMIVNEFCKKG 382

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG  P   T++ +M  
Sbjct: 383 DVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 158/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 201

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A  +F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++  
Sbjct: 202 GLCKES-KMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 260

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+ FTY++L+DG CK G    A E 
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEH 320

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPD G Y  I++ FC 
Sbjct: 321 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCK 380

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 381 KGDVWKGSKLLKEMQRDGHAPSVVTYNV 408



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 175/345 (50%), Gaps = 17/345 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMRE----IGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           ++   +E   L+ A   YR  RE    +    C   L  L+K            +  + E
Sbjct: 59  LITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKL-----KYFKLVWGFYEE 113

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           +   G     Y +  L++  C+ G I  A+ +F  +      P+VV+Y +L+NG  +   
Sbjct: 114 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 173

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           ++E  RL   M + GV+P+V+TYS L++GLCK      A  L   M+ K   PN VT++T
Sbjct: 174 LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTT 233

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L++G CK G++  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +DEM + G
Sbjct: 234 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 293

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
           + P++ T++       T++ G CK  D + AF+    M   +I +D + Y++LI+  C++
Sbjct: 294 LKPDKFTYT-------TLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQE 346

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G    + +++ E++  G  PD GT++ ++     +  + + ++LL
Sbjct: 347 GRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLL 391



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 146/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 244

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TLI GLC+ G + +A +L  EM  K   P   TYT+L
Sbjct: 245 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 304

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 305 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 364

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 365 KPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMN 411



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 19/305 (6%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E        D Y +  LI      G + +A E ++           
Sbjct: 30  KGKGSASAVFAAVLETXGNQ-RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPF 88

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + K  +     +EE+   G   +++ ++ LM   CK G    A  +   
Sbjct: 89  DTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDA 148

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+Y+TL+NG  + G L E   +   M   G++PD   Y  +I+  C   K
Sbjct: 149 ITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK 208

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
              A    DEM++ G+ PN +T++       T++ G CK    + A ++Y  M ++S+  
Sbjct: 209 MDGANGLFDEMLVKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLLP 261

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM----------TALWDR 455
           D +TY++LI   CKKGD+ ++  ++DE+ + G  PD+ T++ ++          TA   R
Sbjct: 262 DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHR 321

Query: 456 RKMRQ 460
           ++M Q
Sbjct: 322 KRMIQ 326



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 126/271 (46%), Gaps = 36/271 (13%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           F   +A  A+G + D  T+S++I+ L   ++   A  L                      
Sbjct: 178 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGL---------------------- 215

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
                        FD+M   G  P   ++ T++    +  ++ LA   Y+ M    + P 
Sbjct: 216 -------------FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 262

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + + N LI  LCK  G +  A  +  EM  +G  PD +TY TLI+G C+ G +  A E  
Sbjct: 263 LITYNTLIYGLCKK-GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHR 321

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           K M  +      V YT+LI+GLCQ     +A ++  EM S G++P+  TY+ +++  CK 
Sbjct: 322 KRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKK 381

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           G   +  +LL+ M    H P++VTY+ L+NG
Sbjct: 382 GDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 202/417 (48%), Gaps = 33/417 (7%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLD-RVNKEKCDITEDIFLSICRGYGRVHRPL-- 102
           FRH   T+  MI  L +      A+ L+   V+++  D    +F +I    G     +  
Sbjct: 9   FRHTLHTYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYV 68

Query: 103 ---------------DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
                          DA+  F   +E        +   VL  L++    KL + FY+ + 
Sbjct: 69  FSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G    +   N+L+   CK  G +  A  +F  +   G  P   ++ TL+NG  RLG +
Sbjct: 129 ECGYPASLYFFNILMHRFCK-EGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDL 187

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +  +L   M      P V TY+ LINGLC+   + EA  LF EM  KG+ PN  T+++L
Sbjct: 188 DQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTL 247

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG CK G    AME  + M+S+   P+++TY+TL+ GLCK+G L++A ++LD M+++GL
Sbjct: 248 IDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGL 307

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-- 385
           KPD   Y  +I   C  G    A    + MV   I  + + ++        ++ GLC+  
Sbjct: 308 KPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYT-------ALISGLCQEG 360

Query: 386 --TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
             TD  +  +  LS+    +  D+ TY+ +I  FCKK D+  +A+++ E+   G +P
Sbjct: 361 RATDAEKMLREMLSV---GLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVP 414



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 133/276 (48%), Gaps = 8/276 (2%)

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D Y +  LIN     G + +A E F+            T   ++  L + K  +     +
Sbjct: 65  DIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +E+   G   +++ ++ LM   CK G    A  +   +     RP++V+++TL+NG  + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRL 184

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G L +  ++ + M   G++PD   Y  +I+  C   K  EA +  +EM+  G+ PN +T+
Sbjct: 185 GDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTF 244

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +       T++ G CK    + A + Y  M ++    D +TY++LI   CKKGD+ ++  
Sbjct: 245 T-------TLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQD 297

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           ++DE+ + G  PD+ T++ ++        +  A EL
Sbjct: 298 LLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFEL 333



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 129/281 (45%), Gaps = 36/281 (12%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +     +   A+ + D + K     +   F ++  GY R+       ++ + M 
Sbjct: 139 FNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMH 198

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M + G+ P   +   LI   CKN G +
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKN-GKV 257

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D+A + +++M ++   PD  TY TLI GLC+ G + +A++L  EM  K   P  +TYT+L
Sbjct: 258 DSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTL 317

Query: 233 I-----------------------------------NGLCQSKSVEEAMRLFEEMRSKGV 257
           I                                   +GLCQ     +A ++  EM S G+
Sbjct: 318 IDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGL 377

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +P+  TY+ +++  CK      A +LL+ M  + H P +VT
Sbjct: 378 KPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 166 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 286 LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        +  GLC+     D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 346 EVAYT-------ALXSGLCQEGRSVDAEKMLREMLSV---GLKPDARTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+ K ++++ E+  DG +P
Sbjct: 396 DVWKGSKLLKEMQRDGHVP 414



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/265 (38%), Positives = 155/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEH 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L +GLC+EG+  +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 334 RKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G   + +  L EM   G  P+ +T
Sbjct: 394 KGDVWKGSKLLKEMQRDGHVPSVVT 418



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 201/429 (46%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH    +  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 9   FRHTLHXYCTMIHFLCTHQMLSEAKSLIQVVVSRK-------------GKG------SAS 49

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E     T +S J V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 50  AVFAAIXE--TXGTQRSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKV 107

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 108 LEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 162

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 163 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 222

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 223 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D + AF+   
Sbjct: 283 IYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYT-------TLIDGCCKEGDLDSAFEHRK 335

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++L +  C++G    + +++ E++  G  PD  T++ ++     + 
Sbjct: 336 RMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKG 395

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 396 DVWKGSKLL 404


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 205/416 (49%), Gaps = 9/416 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  T++++I  L  +N+      LL  + K      E  + ++  G+    + L
Sbjct: 296 SKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 355

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A ++ ++M  FG  P   ++  ++   + E   K A + +  M   G+ P   S  VL+
Sbjct: 356 IASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLL 415

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN+   D A   +  M   G      TY  +I+GLC+ G + EA  L  EM     
Sbjct: 416 DGLCKNA-EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI 474

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VTY++LING C+    + A  +   +   G+ PN   YS+L+   C+ GC  +A+ 
Sbjct: 475 DPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIR 534

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + MI + H  +  T++ L+  LCK GK+ EA E +  M   G+ P+   +  +I+ + 
Sbjct: 535 IYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYG 594

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNR 401
           + G+  +A +  DEM   G  P   T+        ++++GLCK    R  + +L S+   
Sbjct: 595 NSGEGLKAFSVFDEMTKVGHHPTFFTYG-------SLLKGLCKGGHLREAEKFLKSLHAV 647

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
             +VD++ Y++L+T  CK G++ K+  +  E+V    LPD  T++++++ L  + K
Sbjct: 648 PAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGK 703



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 205/418 (49%), Gaps = 9/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D +TF+++I+ L +   F  +  L+ ++ K     T   + ++   Y +  R   A+ + 
Sbjct: 232 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 291

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D MK  G +    +Y  ++  L   N++   +   R MR+  I P   + N LI     N
Sbjct: 292 DHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGF-SN 350

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A ++  EM + G +P+  T+  LI+G    G   EA ++F  ME K  +P+ V+
Sbjct: 351 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 410

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  L++GLC++   + A   +  M+  GV     TY+ ++DGLCK G   +A+ LL  M 
Sbjct: 411 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 470

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                P+IVTYS L+NG CK G+ + A EI+ R+   GL P+  +Y  +I   C +G  +
Sbjct: 471 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 530

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDS 407
           EA    + M+L G T +  T+       N +V  LCK       + ++  M +  I  ++
Sbjct: 531 EAIRIYEAMILEGHTRDHFTF-------NVLVTSLCKAGKVAEAEEFMRCMTSDGILPNT 583

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++  LI  +   G+  K+  + DE+   G  P   T+ +++  L     +R+A + L
Sbjct: 584 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFL 641



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 182/353 (51%), Gaps = 13/353 (3%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C   P  Y  ++ + + E  ++ +   +R M   G  P V + N ++ ++ K SG   + 
Sbjct: 159 CNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK-SGEDVSV 217

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           +   +EM  R   PD  T+  LIN LC  G   ++  L ++ME    +PT+VTY ++++ 
Sbjct: 218 WSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHW 277

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C+    + A+ L + M+SKGV+ +V TY+ L+  LC+    ++   LL+ M  +   PN
Sbjct: 278 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 337

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
            VTY+TL+NG   EGK+  A ++L+ M   GL P+   +  +I      G ++EA     
Sbjct: 338 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFY 397

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKT---DPNRAFQVYLSMRNRSISVDSLTYSS 412
            M   G+TP+ +++ +       ++ GLCK    D  R F  Y+ M+   + V  +TY+ 
Sbjct: 398 MMEAKGLTPSEVSYGV-------LLDGLCKNAEFDLARGF--YMRMKRNGVCVGRITYTG 448

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I   CK G + ++  +++E+  DG  PD  T+SA++       + + A E++
Sbjct: 449 MIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIV 501



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 179/370 (48%), Gaps = 9/370 (2%)

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           C+    ++  + R Y R     D++ +F  M  +G  P+  +   +L  +V+  +    +
Sbjct: 159 CNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVW 218

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
            F + M +  I P VA+ N+LI  LC   G+ + +  + ++M   G  P   TY T+++ 
Sbjct: 219 SFLKEMLKRKICPDVATFNILINVLCA-EGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHW 277

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C+ G+   A EL   M++K     V TY  LI+ LC+S  + +   L  +MR + + PN
Sbjct: 278 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 337

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY++L++G    G    A +LL  M+S    PN VT++ L++G   EG  +EA+++  
Sbjct: 338 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFY 397

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M+ +GL P    YG ++   C   ++  A  F   M   G+   R+T++        ++
Sbjct: 398 MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT-------GMI 450

Query: 381 QGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GLCK    + A  +   M    I  D +TYS+LI  FCK G    +  IV  +   G  
Sbjct: 451 DGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLS 510

Query: 440 PDEGTWSAVM 449
           P+   +S ++
Sbjct: 511 PNGIIYSTLI 520



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 210/477 (44%), Gaps = 34/477 (7%)

Query: 28   VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
            + +A+ I+++   E   G   D+ TF+++++ L  A +   AE+ +  +  +        
Sbjct: 529  LKEAIRIYEAMILE---GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVS 585

Query: 88   FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
            F  +  GYG     L A  VFD+M + G  PT  +Y ++L  L +   L+ A +F + + 
Sbjct: 586  FDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLH 645

Query: 148  EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             +         N L+ A+CK SG +  A  +F EM  R   PDSYTY +LI+GLCR GK 
Sbjct: 646  AVPAAVDTVMYNTLLTAMCK-SGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKT 704

Query: 208  YEAKELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
              A    KE E +    P  V YT  ++G+ ++   +  +   E+M + G  P++ T ++
Sbjct: 705  VIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNA 764

Query: 267  LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
            ++DG  + G   +  +LL  M ++   PN+ TY+ LL+G  K   +  +  +   + L G
Sbjct: 765  MIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNG 824

Query: 327  LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW----------------- 369
            + PD      ++   C+    +     L   +  G+  +R T+                 
Sbjct: 825  ILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAF 884

Query: 370  -------SLHIRIHNTVVQGLCKT-DPNRAFQ----VYLSMRNRSISVDSLTYSSLITCF 417
                   SL I +       +    + N  FQ    V   M  + IS +S  Y  LI   
Sbjct: 885  DLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGL 944

Query: 418  CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            C+ GDI  +  + +E++     P     SA++ AL    K  +A  LL   L  K V
Sbjct: 945  CRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLV 1001



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 195/426 (45%), Gaps = 13/426 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G      ++ +++  L    +F  A     R+ +    +    +  +  G  +     
Sbjct: 401 AKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLD 460

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ + ++M + G +P   +Y  ++    +  + K A      +  +G+ P     + LI
Sbjct: 461 EAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 520

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+  G +  A +I+  M   G T D +T+  L+  LC+ GK+ EA+E  + M +   
Sbjct: 521 YNCCR-MGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 579

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  V++  LING   S    +A  +F+EM   G  P  FTY SL+ GLCKGG   +A +
Sbjct: 580 LPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEK 639

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L+ + +     + V Y+TLL  +CK G L +AV +   M  + + PD+  Y  +IS  C
Sbjct: 640 FLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLC 699

Query: 343 DIGKYQEAANFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL--SMR 399
             GK   A  F  E    G + PN++ ++         V G+ K    +A  +Y    M 
Sbjct: 700 RKGKTVIAILFAKEAEARGNVLPNKVMYT-------CFVDGMFKAGQWKA-GIYFREQMD 751

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N   + D +T +++I  + + G I K+  ++ E+      P+  T++ ++   + +RK  
Sbjct: 752 NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHG-YSKRKDV 810

Query: 460 QAAELL 465
             + LL
Sbjct: 811 STSFLL 816



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 37/284 (13%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
            G   D  TF+++ISK  +  +   A DL+  +      + +D   ++     R HR  ++
Sbjct: 859  GVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQES 918

Query: 105  MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              V  +M + G  P  + YI                                    LI  
Sbjct: 919  RMVLHEMSKQGISPESRKYIG-----------------------------------LING 943

Query: 165  LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            LC+  G +  AF +  EM      P +     ++  L + GK  EA  L + M      P
Sbjct: 944  LCR-VGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVP 1002

Query: 225  TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            T+ ++T+L++  C++ +V EA+ L   M + G++ ++ +Y+ L+ GLC  G  + A EL 
Sbjct: 1003 TIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELY 1062

Query: 285  QMMISKRHRPNIVTYSTLLNG-LCKEGKLQEAVEILDRMKLQGL 327
            + M       N  TY  L+ G L +E     A  IL  +  +G 
Sbjct: 1063 EEMKGDGFLANATTYKALIRGLLARETAFSGADIILKDLLARGF 1106


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 208/417 (49%), Gaps = 13/417 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFD 109
           T+++MI  L        +  L   V   +  ++ D+  + S+  GYG+V    +   +F+
Sbjct: 291 TYNVMIDYLCKEGDLENSRRLF--VQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFN 348

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +MK+ GC P   +Y  ++    +  ++  AF ++  M+  G++P V + + LI A CK  
Sbjct: 349 EMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK-E 407

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G M  A K+F +M   G  P+ +TY +LI+  C+ G + EA +L  +M        +VTY
Sbjct: 408 GMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTY 467

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           T+L++GLC++  + EA  +F  M   G+ PN   Y++L+ G  K      AM++L+ M  
Sbjct: 468 TALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTE 527

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              +P+++ Y +++ G C + KL+E   IL+ MK +G+  +  +   II  +   GK  +
Sbjct: 528 CNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSD 587

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSL 408
           A NF  EM   G+    +T+ +       ++ GLCK      A   +  M +  +  +  
Sbjct: 588 ALNFFQEMQDVGVEATIVTYCV-------LIDGLCKAGIVELAVDYFCRMLSLGLQPNVA 640

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            Y+SLI   CK   I  + ++ DE+   G  PD   ++A++        +++A  L+
Sbjct: 641 VYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLI 697



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 175/329 (53%), Gaps = 9/329 (2%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           + F+ M   G  P+  +Y  ++  L +E  L+ + R +  MRE+G+ P V + N LI   
Sbjct: 275 KFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGY 334

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            K  G+++    +F EM + GC PD  TY  LIN  C+  K+  A E F EM+     P 
Sbjct: 335 GK-VGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPN 393

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VVTY++LI+  C+   ++ A++LF +MR  G+ PN FTY+SL+D  CK G  ++A +LL 
Sbjct: 394 VVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLN 453

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+    + NIVTY+ LL+GLCK G++ EA E+   M   G+ P+  +Y  ++  +    
Sbjct: 454 DMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAE 513

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSIS 404
           + ++A   L +M    I P+ +       ++ +++ G C        ++ L  M++R IS
Sbjct: 514 RMEDAMKILKQMTECNIKPDLI-------LYGSIIWGHCSQRKLEETKLILEEMKSRGIS 566

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            + +  +++I  + K G    +     E+
Sbjct: 567 ANPVISTTIIDAYFKAGKSSDALNFFQEM 595



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 218/471 (46%), Gaps = 37/471 (7%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W +KI       L+   +D   AL  F  A ++   GFRH   ++ +++  +  A  +  
Sbjct: 131 WVSKI-------LLGLREDPKLALKFFKWAGSQV--GFRHTTESYCIIVHLVFRARMYTD 181

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG--CEPTPKSYITV 126
           A D +  V         D+   +C              +FD +      C      +  +
Sbjct: 182 AHDTVKEVIMNS---RMDMGFPVCN-------------IFDMLWSTRNICVSGSGVFDVL 225

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
            ++ VE   L+ A   +  MR     P   S N L+  L K SG      K F +M   G
Sbjct: 226 FSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSK-SGNGQLVRKFFNDMIGAG 284

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             P  +TY  +I+ LC+ G +  ++ LF +M     SP VVTY SLI+G  +  S+EE  
Sbjct: 285 IAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVA 344

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            LF EM+  G  P++ TY+ L++  CK     +A E    M +   +PN+VTYSTL++  
Sbjct: 345 SLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAF 404

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CKEG +Q A+++   M+  GL P+   Y  +I   C  G   EA   L++M+  G+  N 
Sbjct: 405 CKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNI 464

Query: 367 LTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           +T++        ++ GLCK      A +V+ SM    IS +   Y++L+  + K   +  
Sbjct: 465 VTYT-------ALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMED 517

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476
           + +I+ ++      PD   + +++     +RK+ +  +L+L E+ ++ + A
Sbjct: 518 AMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEE-TKLILEEMKSRGISA 567



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 158/323 (48%), Gaps = 1/323 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T++ +I     A     A  LL+ + +    +    + ++  G  +  R ++A
Sbjct: 424 GLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEA 483

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             VF  M + G  P  + Y  ++   ++  +++ A +  + M E  I+P +     +I  
Sbjct: 484 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 543

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C      +    I  EM +RG + +     T+I+   + GK  +A   F+EM+      
Sbjct: 544 HCSQRKLEETKL-ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEA 602

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T+VTY  LI+GLC++  VE A+  F  M S G++PNV  Y+SL+DGLCK  C   A +L 
Sbjct: 603 TIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLF 662

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  +   P+I  ++ L++G  K G LQEA+ ++ RM    ++ D  +Y  ++S F   
Sbjct: 663 DEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQC 722

Query: 345 GKYQEAANFLDEMVLGGITPNRL 367
           G+  +A  F +EM+  GI P  +
Sbjct: 723 GELHQARKFFNEMIEKGILPEEV 745



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 156/313 (49%), Gaps = 1/313 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ ++  L  A +   AE++   + K+     + ++ ++  GY +  R  DA
Sbjct: 459 GVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDA 518

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M++  +M E   +P    Y +++     + +L+        M+  GI         +I A
Sbjct: 519 MKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDA 578

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K +G    A   F+EM + G      TY  LI+GLC+ G +  A + F  M +    P
Sbjct: 579 YFK-AGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQP 637

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V  YTSLI+GLC++  +E A +LF+EM+ +G+ P++  +++L+DG  K G   +A+ L+
Sbjct: 638 NVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLI 697

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M       ++  Y++L++G  + G+L +A +  + M  +G+ P+  L   ++  +   
Sbjct: 698 SRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKR 757

Query: 345 GKYQEAANFLDEM 357
           G+  EA    +EM
Sbjct: 758 GQLDEAIELKNEM 770


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 199/416 (47%), Gaps = 31/416 (7%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRV--------------------NKEKCDITE 85
           FRH   ++  MI  L +   F  A+ L+  V                      ++ DI  
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAIIETKGNQRSDIY- 67

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +F  +   Y       DA+  +   +E        +   +L  LV+     L + FY  
Sbjct: 68  -VFSGLITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEE 126

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           + E G    +   N+L+   CK  G +  A  +F  +   G  P   +Y TL+NG  RLG
Sbjct: 127 ILECGYPASLYFFNILMHRFCKE-GDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 185

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + E  +L   M      P V TY+ LINGLC+   +++A  LFEEM  KG+ PN  T++
Sbjct: 186 DLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFT 245

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG CK G    AME+ + M+S+   P+++TY+TL+ GLCK+G L +A +++D M ++
Sbjct: 246 TLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMK 305

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GLKPD   Y  +I   C  G    A      M+   I  + + ++        ++ GLC+
Sbjct: 306 GLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYT-------ALISGLCQ 358

Query: 386 TDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
              +  A ++   M +  +  D+ TY+ +I  FCKKGD+ K ++++ E+  DG  P
Sbjct: 359 EGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAP 414



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 155/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   F+    M   G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++  
Sbjct: 215 GLCKES-KMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLL 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+  ++ +A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEH 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A +++  M   GLKPD G Y  II+ FC 
Sbjct: 334 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G   + +  L EM   G  P+ +T
Sbjct: 394 KGDVWKGSKLLKEMQRDGHAPSVVT 418



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 142/305 (46%), Gaps = 19/305 (6%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E        D Y +  LI      G + +A E ++           
Sbjct: 43  KGKGSASAVFAAIIETKGNQ-RSDIYVFSGLITAYLESGFLRDAVECYRLTREHKFWVPF 101

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + K        +EE+   G   +++ ++ LM   CK G    A  +   
Sbjct: 102 DTCKKMLEHLVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDA 161

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+Y+TL+NG  + G L E  ++   M   G++PD   Y  +I+  C   K
Sbjct: 162 ITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESK 221

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    +EM++ G+ PN +T++       T++ G CK    + A +VY  M ++S+  
Sbjct: 222 MDDANELFEEMLVKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEVYKQMLSQSLLP 274

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM----------TALWDR 455
           D +TY++LI   CKKG ++++  ++DE+ + G  PD+ T++ ++          TA   R
Sbjct: 275 DLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHR 334

Query: 456 RKMRQ 460
           ++M Q
Sbjct: 335 KRMIQ 339


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 208/425 (48%), Gaps = 12/425 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  +D  T +L+++    ++Q   A   L ++ K   +     F S+  G+   +R  +A
Sbjct: 101 GVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEA 160

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M + ++M E G +P    Y T++  L +   +  A   +  M   GI+P V     L+  
Sbjct: 161 MSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNG 220

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC NSG    A  + R M  R   PD  T+  LI+   + GK+ +AKEL+ EM   + +P
Sbjct: 221 LC-NSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAP 279

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            + TYTSLINGLC    ++EA ++F  M +KG  P+V  Y+SL++G CK      AM++ 
Sbjct: 280 NIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIF 339

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  K    N +TY+TL+ G    GK   A E+   M  +G+ P+   Y  ++ C C  
Sbjct: 340 YEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYN 399

Query: 345 GKYQEAANFLDEMV---LGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           GK  +A    ++M    + G+ PN       IR +N ++ GLC      +A  V+  M+ 
Sbjct: 400 GKVNKALMIFEDMQKREIDGVPPN-------IRTYNVLLHGLCYNGKLEKALMVFGDMQK 452

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R + +  +TY+ +I   CK G +  +  +   L   G  P+  T++ +++ L+    M +
Sbjct: 453 RDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLE 512

Query: 461 AAELL 465
           A  L 
Sbjct: 513 AHVLF 517



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 190/397 (47%), Gaps = 45/397 (11%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +F  M E    P+   +  +L ++ +  +  +     +H++ +G+   + + N+L+
Sbjct: 54  EALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLM 113

Query: 163 KALCKNS----------------------------------GTMDAAFKIFREMPNRGCT 188
              C++S                                    ++ A  +  +M   G  
Sbjct: 114 NCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIK 173

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD   Y T+I+ LC+ G +  A  LF +ME     P VV YTSL+NGLC S    +A  L
Sbjct: 174 PDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLL 233

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
              M  + ++P+V T+++L+D   K G    A EL   MI     PNI TY++L+NGLC 
Sbjct: 234 LRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCM 293

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EG+L EA ++   M+ +G  PD   Y  +I+ FC   K ++A     EM   G+T N +T
Sbjct: 294 EGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTIT 353

Query: 369 WSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           ++       T++QG      PN A +V+  M +R +  +  TY+ L+ C C  G ++K+ 
Sbjct: 354 YT-------TLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKAL 406

Query: 428 RIVDELV---LDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I +++    +DG  P+  T++ ++  L    K+ +A
Sbjct: 407 MIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKA 443



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 156/332 (46%), Gaps = 9/332 (2%)

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           Q   A   + HM E    P +     L+  + K     D    + + +   G + D YT 
Sbjct: 51  QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMK-KFDVVINLCKHLQIMGVSNDLYTC 109

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
             L+N  C+  +   A     ++      P + T+TSLING C    +EEAM +  +M  
Sbjct: 110 NLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVE 169

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G++P+V  Y++++D LCK G    A+ L   M +   RP++V Y++L+NGLC  G+ ++
Sbjct: 170 MGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRD 229

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A  +L  M  + +KPD   +  +I  F   GK  +A    +EM+   I PN  T++    
Sbjct: 230 ADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYT---- 285

Query: 375 IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              +++ GLC +   + A Q++  M  +    D + Y+SLI  FCK   +  + +I  E+
Sbjct: 286 ---SLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEM 342

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              G   +  T++ ++       K   A E+ 
Sbjct: 343 SQKGLTGNTITYTTLIQGFGLVGKPNVAQEVF 374



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 180/397 (45%), Gaps = 84/397 (21%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN----KEKCDITEDIFLSICRGYGRVHR 100
           GF  D  TF+ +I+     N+   A  +++++     K    I   I  S+C+  G V  
Sbjct: 136 GFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKN-GHVD- 193

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A+ +F++M+ +G  P    Y +++  L    + + A    R M +  I+P V + N 
Sbjct: 194 --NALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNA 251

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI A  K    +DA  +++ EM      P+ +TY +LINGLC  G++ EA+++F  METK
Sbjct: 252 LIDAFVKEGKLLDAK-ELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETK 310

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR--------------------------- 253
            C P VV YTSLING C+ K VE+AM++F EM                            
Sbjct: 311 GCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVA 370

Query: 254 --------SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH----RPNIVTYST 301
                   S+GV PN+ TY+ L+  LC  G  ++A+ + + M  KR      PNI TY+ 
Sbjct: 371 QEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDM-QKREIDGVPPNIRTYNV 429

Query: 302 LLNGLC-----------------------------------KEGKLQEAVEILDRMKLQG 326
           LL+GLC                                   K GK+++A+ +   +  +G
Sbjct: 430 LLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKG 489

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +KP+   Y  +IS     G   EA     +M   G++
Sbjct: 490 VKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 100/202 (49%), Gaps = 9/202 (4%)

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           ++A++L   M+  R  P+I+ ++ LLN + K  K    + +   +++ G+  D      +
Sbjct: 53  NEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLL 112

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           ++CFC   +   A++FL +++  G  P+  T++       +++ G C  +    A  +  
Sbjct: 113 MNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFT-------SLINGFCLGNRIEEAMSMVN 165

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M    I  D + Y+++I   CK G +  +  + +++   G  PD   +++++  L +  
Sbjct: 166 QMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSG 225

Query: 457 KMRQAAELLLLELMNKCVEAEV 478
           + R  A+LLL  +M + ++ +V
Sbjct: 226 RWRD-ADLLLRGMMKRKIKPDV 246



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 58/124 (46%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           VNKAL+IF+       +G   +  T+++++  L    +   A  +   + K   DI    
Sbjct: 402 VNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIIT 461

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  I +G  +  +  DA+ +F  +   G +P   +Y T+++ L  E  +  A   +R M+
Sbjct: 462 YTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMK 521

Query: 148 EIGI 151
           E G+
Sbjct: 522 EDGV 525


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 181/344 (52%), Gaps = 17/344 (4%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E G +P V +   L+  LC   G +  A  +   M   G  P    YGT+INGLC++G
Sbjct: 1   MVETGCRPDVVTFTTLMNGLC-CEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMG 55

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
               A  L  +ME       VV Y ++I+ LC+      A  LF EM  KG+ P+V TYS
Sbjct: 56  DTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYS 115

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            ++D  C+ G  + A +LL+ MI ++  P++VT+S L+N L KEGK+ EA EI   M  +
Sbjct: 116 GMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRR 175

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G+ P    Y  +I  FC   +  +A   LD M     +P+ +T+S       T++ G CK
Sbjct: 176 GIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFS-------TLINGYCK 228

Query: 386 TD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               +   +++  M  R I  +++TY++LI  FC+ GD+  +  +++ ++  G  P+  T
Sbjct: 229 AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYIT 288

Query: 445 WSAVMTALWDRRKMRQAAELL----LLELMNKCVEAEVDIQNQD 484
           + +++ +L  ++++R+A  +L      E+  + V+A+  IQ  D
Sbjct: 289 FQSMLASLCSKKELRKAFAILEDLQKSEVCPRIVQAKFKIQIPD 332



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 157/296 (53%), Gaps = 13/296 (4%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R L A+ + D+M E G +P    Y T++  L +    + A      M E  I+  V   N
Sbjct: 25  RVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYN 80

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I  LCK+   + A   +F EM ++G  PD  TY  +I+  CR G+  +A++L ++M  
Sbjct: 81  AIIDRLCKDGHHIHAQ-NLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIE 139

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +  +P VVT+++LIN L +   V EA  ++ +M  +G+ P   TY+S++DG CK    + 
Sbjct: 140 RQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLND 199

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  +L  M SK   P++VT+STL+NG CK  ++   +EI   M  +G+  +   Y  +I 
Sbjct: 200 AKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIH 259

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQV 394
            FC +G    A + L+ M+  G+ PN +T+        +++  LC K +  +AF +
Sbjct: 260 GFCQVGDLDAAQDLLNVMISSGVAPNYITF-------QSMLASLCSKKELRKAFAI 308



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 166/331 (50%), Gaps = 5/331 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  TF+ +++ L    +   A  L+DR+ +E        + +I  G  ++     A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEG----HQPYGTIINGLCKMGDTESA 60

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  KM+E   +     Y  ++  L ++     A   +  M + GI P V + + +I +
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+ SG    A ++ R+M  R   PD  T+  LIN L + GK+ EA+E++ +M  +   P
Sbjct: 121 FCR-SGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFP 179

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T +TY S+I+G C+   + +A R+ + M SK   P+V T+S+L++G CK       ME+ 
Sbjct: 180 TTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIF 239

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  +    N VTY+TL++G C+ G L  A ++L+ M   G+ P+   +  +++  C  
Sbjct: 240 CEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSK 299

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
            + ++A   L+++    + P  +     I+I
Sbjct: 300 KELRKAFAILEDLQKSEVCPRIVQAKFKIQI 330



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 161/321 (50%), Gaps = 16/321 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +  E  V +AL + D    E        +  +  +I+ L        A +L
Sbjct: 11  VTFTTLMNGLCCEGRVLQALALVDRMVEE-------GHQPYGTIINGLCKMGDTESALNL 63

Query: 73  LDRVN----KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           L ++     K    I   I   +C+    +H    A  +F +M + G  P   +Y  ++ 
Sbjct: 64  LSKMEETHIKAHVVIYNAIIDRLCKDGHHIH----AQNLFTEMHDKGIFPDVITYSGMID 119

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
                 +   A +  R M E  I P V + + LI AL K  G +  A +I+ +M  RG  
Sbjct: 120 SFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVK-EGKVSEAEEIYGDMLRRGIF 178

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P + TY ++I+G C+  ++ +AK +   M +K+CSP VVT+++LING C++K V+  M +
Sbjct: 179 PTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEI 238

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EM  +G+  N  TY++L+ G C+ G    A +LL +MIS    PN +T+ ++L  LC 
Sbjct: 239 FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCS 298

Query: 309 EGKLQEAVEILDRMKLQGLKP 329
           + +L++A  IL+ ++   + P
Sbjct: 299 KKELRKAFAILEDLQKSEVCP 319


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 205/416 (49%), Gaps = 9/416 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  T++++I  L  +N+      LL  + K      E  + ++  G+    + L
Sbjct: 256 SKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A ++ ++M  FG  P   ++  ++   + E   K A + +  M   G+ P   S  VL+
Sbjct: 316 IASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLL 375

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN+   D A   +  M   G      TY  +I+GLC+ G + EA  L  EM     
Sbjct: 376 DGLCKNA-EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI 434

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VTY++LING C+    + A  +   +   G+ PN   YS+L+   C+ GC  +A+ 
Sbjct: 435 DPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIR 494

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + MI + H  +  T++ L+  LCK GK+ EA E +  M   G+ P+   +  +I+ + 
Sbjct: 495 IYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYG 554

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNR 401
           + G+  +A +  DEM   G  P   T+        ++++GLCK    R  + +L S+   
Sbjct: 555 NSGEGLKAFSVFDEMTKVGHHPTFFTYG-------SLLKGLCKGGHLREAEKFLKSLHAV 607

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
             +VD++ Y++L+T  CK G++ K+  +  E+V    LPD  T++++++ L  + K
Sbjct: 608 PAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGK 663



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 205/418 (49%), Gaps = 9/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D +TF+++I+ L +   F  +  L+ ++ K     T   + ++   Y +  R   A+ + 
Sbjct: 192 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 251

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D MK  G +    +Y  ++  L   N++   +   R MR+  I P   + N LI     N
Sbjct: 252 DHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGF-SN 310

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A ++  EM + G +P+  T+  LI+G    G   EA ++F  ME K  +P+ V+
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  L++GLC++   + A   +  M+  GV     TY+ ++DGLCK G   +A+ LL  M 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                P+IVTYS L+NG CK G+ + A EI+ R+   GL P+  +Y  +I   C +G  +
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDS 407
           EA    + M+L G T +  T+       N +V  LCK       + ++  M +  I  ++
Sbjct: 491 EAIRIYEAMILEGHTRDHFTF-------NVLVTSLCKAGKVAEAEEFMRCMTSDGILPNT 543

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++  LI  +   G+  K+  + DE+   G  P   T+ +++  L     +R+A + L
Sbjct: 544 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFL 601



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 182/353 (51%), Gaps = 13/353 (3%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C   P  Y  ++ + + E  ++ +   +R M   G  P V + N ++ ++ K SG   + 
Sbjct: 119 CNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK-SGEDVSV 177

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           +   +EM  R   PD  T+  LIN LC  G   ++  L ++ME    +PT+VTY ++++ 
Sbjct: 178 WSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHW 237

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C+    + A+ L + M+SKGV+ +V TY+ L+  LC+    ++   LL+ M  +   PN
Sbjct: 238 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 297

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
            VTY+TL+NG   EGK+  A ++L+ M   GL P+   +  +I      G ++EA     
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFY 357

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKT---DPNRAFQVYLSMRNRSISVDSLTYSS 412
            M   G+TP+ +++ +       ++ GLCK    D  R F  Y+ M+   + V  +TY+ 
Sbjct: 358 MMEAKGLTPSEVSYGV-------LLDGLCKNAEFDLARGF--YMRMKRNGVCVGRITYTG 408

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I   CK G + ++  +++E+  DG  PD  T+SA++       + + A E++
Sbjct: 409 MIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIV 461



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 179/370 (48%), Gaps = 9/370 (2%)

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           C+    ++  + R Y R     D++ +F  M  +G  P+  +   +L  +V+  +    +
Sbjct: 119 CNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVW 178

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
            F + M +  I P VA+ N+LI  LC   G+ + +  + ++M   G  P   TY T+++ 
Sbjct: 179 SFLKEMLKRKICPDVATFNILINVLCA-EGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHW 237

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C+ G+   A EL   M++K     V TY  LI+ LC+S  + +   L  +MR + + PN
Sbjct: 238 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 297

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY++L++G    G    A +LL  M+S    PN VT++ L++G   EG  +EA+++  
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFY 357

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M+ +GL P    YG ++   C   ++  A  F   M   G+   R+T++        ++
Sbjct: 358 MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT-------GMI 410

Query: 381 QGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GLCK    + A  +   M    I  D +TYS+LI  FCK G    +  IV  +   G  
Sbjct: 411 DGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLS 470

Query: 440 PDEGTWSAVM 449
           P+   +S ++
Sbjct: 471 PNGIIYSTLI 480



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 210/477 (44%), Gaps = 34/477 (7%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           + +A+ I+++   E   G   D+ TF+++++ L  A +   AE+ +  +  +        
Sbjct: 489 LKEAIRIYEAMILE---GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVS 545

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  +  GYG     L A  VFD+M + G  PT  +Y ++L  L +   L+ A +F + + 
Sbjct: 546 FDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLH 605

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +         N L+ A+CK SG +  A  +F EM  R   PDSYTY +LI+GLCR GK 
Sbjct: 606 AVPAAVDTVMYNTLLTAMCK-SGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKT 664

Query: 208 YEAKELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
             A    KE E +    P  V YT  ++G+ ++   +  +   E+M + G  P++ T ++
Sbjct: 665 VIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNA 724

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++DG  + G   +  +LL  M ++   PN+ TY+ LL+G  K   +  +  +   + L G
Sbjct: 725 MIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNG 784

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW----------------- 369
           + PD      ++   C+    +     L   +  G+  +R T+                 
Sbjct: 785 ILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAF 844

Query: 370 -------SLHIRIHNTVVQGLCKT-DPNRAFQ----VYLSMRNRSISVDSLTYSSLITCF 417
                  SL I +       +    + N  FQ    V   M  + IS +S  Y  LI   
Sbjct: 845 DLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGL 904

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           C+ GDI  +  + +E++     P     SA++ AL    K  +A  LL   L  K V
Sbjct: 905 CRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLV 961



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 195/426 (45%), Gaps = 13/426 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G      ++ +++  L    +F  A     R+ +    +    +  +  G  +     
Sbjct: 361 AKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLD 420

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ + ++M + G +P   +Y  ++    +  + K A      +  +G+ P     + LI
Sbjct: 421 EAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+  G +  A +I+  M   G T D +T+  L+  LC+ GK+ EA+E  + M +   
Sbjct: 481 YNCCR-MGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  V++  LING   S    +A  +F+EM   G  P  FTY SL+ GLCKGG   +A +
Sbjct: 540 LPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEK 599

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L+ + +     + V Y+TLL  +CK G L +AV +   M  + + PD+  Y  +IS  C
Sbjct: 600 FLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLC 659

Query: 343 DIGKYQEAANFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL--SMR 399
             GK   A  F  E    G + PN++ ++         V G+ K    +A  +Y    M 
Sbjct: 660 RKGKTVIAILFAKEAEARGNVLPNKVMYT-------CFVDGMFKAGQWKA-GIYFREQMD 711

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N   + D +T +++I  + + G I K+  ++ E+      P+  T++ ++   + +RK  
Sbjct: 712 NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHG-YSKRKDV 770

Query: 460 QAAELL 465
             + LL
Sbjct: 771 STSFLL 776



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 37/284 (13%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
            G   D  TF+++ISK  +  +   A DL+  +      + +D   ++     R HR  ++
Sbjct: 819  GVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQES 878

Query: 105  MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              V  +M + G  P  + YI                                    LI  
Sbjct: 879  RMVLHEMSKQGISPESRKYIG-----------------------------------LING 903

Query: 165  LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            LC+  G +  AF +  EM      P +     ++  L + GK  EA  L + M      P
Sbjct: 904  LCR-VGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVP 962

Query: 225  TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            T+ ++T+L++  C++ +V EA+ L   M + G++ ++ +Y+ L+ GLC  G  + A EL 
Sbjct: 963  TIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELY 1022

Query: 285  QMMISKRHRPNIVTYSTLLNG-LCKEGKLQEAVEILDRMKLQGL 327
            + M       N  TY  L+ G L +E     A  IL  +  +G 
Sbjct: 1023 EEMKGDGFLANATTYKALIRGLLARETAFSGADIILKDLLARGF 1066


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 214/479 (44%), Gaps = 64/479 (13%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F  D    + MIS L+ A+ F  A   L R+    C      + ++  G+ +  +     
Sbjct: 267 FNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCK 326

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+ + M   GC P P  + +++           A++ +  M   G  P   + N+ I ++
Sbjct: 327 RIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSI 386

Query: 166 CKNS----------------------------------------GTMDAAFKIFREMPNR 185
           C                                           G  + AF+I +EM  +
Sbjct: 387 CGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRK 446

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD+ TY  +I  LC+  K+ ++  LF+EM+    +P V TYT LI+  C++  +E+A
Sbjct: 447 GFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQA 506

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
              F+EMRS G  PNV TY++L+    K     QA ++   M+     PN VTYS L++G
Sbjct: 507 RSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDG 566

Query: 306 LCKEGKLQEAVEILDRM-----------KLQG-----LKPDAGLYGKIISCFCDIGKYQE 349
           LCK G++Q+A E+ +++             +G     + P+   YG +I   C   K  +
Sbjct: 567 LCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSD 626

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A   LD M+  G  PN++       +++ ++ G CK    + A +V+L M          
Sbjct: 627 AHELLDAMLAAGCEPNQI-------VYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVH 679

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           TY+SLI    K G +  + +++ E++ D C P+  T++A++  L    ++ +A  LL L
Sbjct: 680 TYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSL 738



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 216/478 (45%), Gaps = 68/478 (14%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  ++S  +   QF   + +++ +  E C+    +F S+  GY        A ++F++M
Sbjct: 308 TYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRM 367

Query: 112 KEFGCEPTPKSYITVLAILVEENQL----------------------------------- 136
              G  P   +Y   +  +  + +L                                   
Sbjct: 368 TTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCL 427

Query: 137 ------KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
                 + AF+  + M   G  P  ++   +I  LC+ +  ++ +F +F+EM   G  PD
Sbjct: 428 CGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQ-AKKVEKSFLLFQEMKRAGVNPD 486

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YTY  LI+  C+ G I +A+  F EM +  CSP VVTYT+L++   +SK + +A  +F 
Sbjct: 487 VYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFH 546

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR----------------P 294
            M      PN  TYS+L+DGLCK G   +A E+ + +I                     P
Sbjct: 547 RMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAP 606

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N+VTY  L++GLCK  K+ +A E+LD M   G +P+  +Y  +I  FC IGK   A    
Sbjct: 607 NVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVF 666

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
             M   G  P+       +  + +++  + K    + A +V   M N S + + +TY+++
Sbjct: 667 LRMTKCGYLPS-------VHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAM 719

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           I    K G+I K+  ++  +   GC P+  T++A++  L   +  +  A L L + MN
Sbjct: 720 IDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGL--GKTGKADASLKLFKQMN 775



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 222/480 (46%), Gaps = 42/480 (8%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNS-----------T 52
           K  F W  +I +  + +       +  +LV       +YA  ++  N             
Sbjct: 319 KKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVA 378

Query: 53  FSLMISKLVSANQFRPAE--DLLDRVNKE----KCDITEDIFLSICRGYGRVHRPLDAMR 106
           +++ I  +    +   AE  DL+++V +E     C + +    +  R    V +   A +
Sbjct: 379 YNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQ 438

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +  +M   G  P   +Y  V+  L +  +++ +F  ++ M+  G+ P V +  +LI + C
Sbjct: 439 ILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFC 498

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +G ++ A   F EM + GC+P+  TY  L++   +  ++ +A ++F  M   AC P  
Sbjct: 499 K-AGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNA 557

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEM--RSKGVE--------------PNVFTYSSLMDG 270
           VTY++LI+GLC++  +++A  ++E++   S  VE              PNV TY +L+DG
Sbjct: 558 VTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDG 617

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LCK    S A ELL  M++    PN + Y  L++G CK GK+  A E+  RM   G  P 
Sbjct: 618 LCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPS 677

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
              Y  +I      G+   A   L EM+     PN +T++        ++ GL K  +  
Sbjct: 678 VHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYT-------AMIDGLSKVGEIE 730

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +A  +   M  +  S + +TY++LI    K G    S ++  ++   GC P+  T+  ++
Sbjct: 731 KALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLI 790



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 198/443 (44%), Gaps = 40/443 (9%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T  +V+  +   K V K+ ++F         G   D  T++++I     A     A    
Sbjct: 454 TYTKVITFLCQAKKVEKSFLLFQEMKRA---GVNPDVYTYTILIDSFCKAGLIEQARSWF 510

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           D +    C      + ++   Y +  + + A  +F +M +  C P   +Y  ++  L + 
Sbjct: 511 DEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKA 570

Query: 134 NQLKLAFRFYRHMREIG------------------IQPCVASLNVLIKALCKNSGTMDAA 175
            +++ A   Y  +  IG                  I P V +   LI  LCK     DA 
Sbjct: 571 GEIQKACEVYEKL--IGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDA- 627

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            ++   M   GC P+   Y  LI+G C++GKI  A+E+F  M      P+V TYTSLI+ 
Sbjct: 628 HELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDR 687

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           + +   ++ AM++  EM +    PNV TY++++DGL K G   +A+ LL +M  K   PN
Sbjct: 688 MFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPN 747

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +VTY+ L++GL K GK   ++++  +M  +G  P+   Y  +I+  C  G   EA   LD
Sbjct: 748 VVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLD 807

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL----TYS 411
           EM           W  H++ ++  VQG  K      F   L +     S +++     Y 
Sbjct: 808 EM-------KHTHWPKHLQGYHCAVQGFSKK-----FIASLGLLEEMESHETVPIAPVYG 855

Query: 412 SLITCFCKKGDIHKSARIVDELV 434
            LI  F K G +  +  +  ELV
Sbjct: 856 MLIDSFSKAGRLETALELHKELV 878



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 201/434 (46%), Gaps = 20/434 (4%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99
           AE   G+ H  + +  +   L   +  R AE LL  + ++  ++   +   + R   R  
Sbjct: 124 AERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLNVLVRRCCRHG 183

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
              +A+    ++K+FG  P+  +Y  ++ +L    Q+++ FR  + M   G     +++ 
Sbjct: 184 LWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIG 243

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
              +ALCK     DA   + +E  N     D+     +I+GL       EA      M  
Sbjct: 244 YFAQALCKVGRWADALNMLEKEDFNL----DTVLCTQMISGLMEASLFNEAMSFLHRMRC 299

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
            +C P VVTY +L++G  + K      R+   M ++G  PN   ++SL+ G C  G  + 
Sbjct: 300 NSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAY 359

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK--LQGLKPDAGLYGKI 337
           A +L   M +    P  V Y+  +  +C + +L  A E+LD ++   + +   + +  K+
Sbjct: 360 AYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNA-ELLDLVEKVYEEMLAASCVLNKV 418

Query: 338 IS-----CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            +     C C +GK+++A   L EM+  G  P+  T++        V+  LC+     ++
Sbjct: 419 NTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYT-------KVITFLCQAKKVEKS 471

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           F ++  M+   ++ D  TY+ LI  FCK G I ++    DE+   GC P+  T++A++ A
Sbjct: 472 FLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHA 531

Query: 452 LWDRRKMRQAAELL 465
               +++ QA ++ 
Sbjct: 532 YLKSKQLIQAHDIF 545



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 163/370 (44%), Gaps = 53/370 (14%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL----------------SICRGY 95
           T+S +I  L  A + + A ++ +++     ++  D +                 ++  G 
Sbjct: 559 TYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGL 618

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
            +  +  DA  + D M   GCEP    Y  ++    +  ++  A   +  M + G  P V
Sbjct: 619 CKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSV 678

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            +   LI  + K+ G +D A K+  EM N  C P+  TY  +I+GL ++G+I +A  L  
Sbjct: 679 HTYTSLIDRMFKD-GRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLS 737

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            ME K CSP VVTYT+LI+GL ++   + +++LF++M SKG  PN  TY  L++  C  G
Sbjct: 738 LMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAG 797

Query: 276 -------------------------CSSQ--------AMELLQMMISKRHRPNIVTYSTL 302
                                    C+ Q        ++ LL+ M S    P    Y  L
Sbjct: 798 LLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGML 857

Query: 303 LNGLCKEGKLQEAVEI---LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           ++   K G+L+ A+E+   L  +         G+Y  +I   C   + +EA     EM  
Sbjct: 858 IDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTR 917

Query: 360 GGITPNRLTW 369
            GI P+ + +
Sbjct: 918 KGIVPDLIVF 927



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 154/335 (45%), Gaps = 37/335 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  +I  L  A +   A +LLD +    C+  + ++ ++  G+ ++ +  +A  VF +M
Sbjct: 610 TYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRM 669

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G  P+  +Y +++  + ++ +L LA +    M      P V +   +I  L K  G 
Sbjct: 670 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSK-VGE 728

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +   M  +GC+P+  TY  LI+GL + GK   + +LFK+M +K C+P  VTY  
Sbjct: 729 IEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRV 788

Query: 232 LINGLCQSKSVEEA---------------------------------MRLFEEMRSKGVE 258
           LIN  C +  ++EA                                 + L EEM S    
Sbjct: 789 LINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETV 848

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT---YSTLLNGLCKEGKLQEA 315
           P    Y  L+D   K G    A+EL + ++      N+ +   Y++L+  LC   +++EA
Sbjct: 849 PIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEA 908

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +   M  +G+ PD  ++  ++    ++ K+ EA
Sbjct: 909 FTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEA 943



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 6/235 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MI  L    +   A +LL  + ++ C      + ++  G G+  +   ++++F +M
Sbjct: 715 TYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQM 774

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P   +Y  ++        L  A      M+       +   +  ++   K    
Sbjct: 775 NSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKK--- 831

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT--- 228
             A+  +  EM +    P +  YG LI+   + G++  A EL KE+   + S  + +   
Sbjct: 832 FIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGM 891

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           Y SLI  LC +  VEEA  L+ EM  KG+ P++  + SL+ GL +     +A++L
Sbjct: 892 YASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 175/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+ G CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M ++GLKPD   Y  +I   C  G    A      M+ G I  +
Sbjct: 292 LCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D  TY+ +I  FCKKG
Sbjct: 352 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPDIGTYTMIINEFCKKG 401

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  +G +P   T++ +M  
Sbjct: 402 DVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 156/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI G C+ G++  A E++K M +++  
Sbjct: 221 GLCKES-KMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLL 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+ FTY++L+DG CK G    A + 
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI    R + V Y+ L++GLC+EG+  +A ++L  M   GLKPD G Y  II+ FC 
Sbjct: 340 RKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGSKLLKEMQRNGHVPSVVTYNV 427



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 201/429 (46%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRK-------------GKG------SAS 55

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 56  AVFATILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKV 113

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 114 LEHLMKLR-----YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL+ G CK G++  A+EI   M  Q L PD   Y  +
Sbjct: 229 DDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTL 288

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A   +DEM + G+ P++ T++       T++ G CK  D + AF+   
Sbjct: 289 IYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYT-------TLIDGCCKEGDLDTAFKHRK 341

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD GT++ ++     + 
Sbjct: 342 RMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKG 401

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 402 DVWKGSKLL 410



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 145/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I++ M ++   PD  TY TLI GLC+ G + +A  L  EM  K   P   TYT+L
Sbjct: 264 DLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A +  + M    +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 324 IDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+I TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 384 KPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMN 430



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 1/203 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M   G  P   ++ T++    +  ++ LA   Y+ M    + P + + N LI
Sbjct: 230 DANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLI 289

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +  A  +  EM  +G  PD +TY TLI+G C+ G +  A +  K M     
Sbjct: 290 YGLCKK-GDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNI 348

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V YT+LI+GLCQ     +A ++  EM S G++P++ TY+ +++  CK G   +  +
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSK 408

Query: 283 LLQMMISKRHRPNIVTYSTLLNG 305
           LL+ M    H P++VTY+ L+NG
Sbjct: 409 LLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 1/236 (0%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           F   +A  A+G + D  T+S++I+ L   ++   A +L D +  +        F ++  G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXG 256

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           + +  R   AM ++  M      P   +Y T++  L ++  LK A      M   G++P 
Sbjct: 257 HCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPD 316

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             +   LI   CK  G +D AFK  + M       D   Y  LI+GLC+ G+  +A+++ 
Sbjct: 317 KFTYTTLIDGCCKE-GDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKML 375

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           +EM +    P + TYT +IN  C+   V +  +L +EM+  G  P+V TY+ LM+G
Sbjct: 376 REMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 229/448 (51%), Gaps = 36/448 (8%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLD--RVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           ++ T++++IS L        A  L+D  R++K+    T +  ++     G V + ++A++
Sbjct: 279 NDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLITALLERGFVQK-VEALQ 337

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +  +M+  G  PT  +Y  ++  L++  Q++ A   +  MR +G+ P + + N ++   C
Sbjct: 338 M--EMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYC 395

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +G +  A  +  ++   G  P   TY TLI+G CRLG + EA+ L +EM  + C P V
Sbjct: 396 K-AGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDV 454

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            TYT L+NG  + +++  A   F+EM SKG++P+ F Y++ +      G + +A +L ++
Sbjct: 455 CTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREV 514

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+ K   P+ VTY+ +++GLCK G L++A ++  +M   GL+PD   Y  +I   C+ G 
Sbjct: 515 MMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGL 574

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNT 378
             EA   L+ MV  G+ P+ +T+++ I                              +N 
Sbjct: 575 LSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNV 634

Query: 379 VVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++  LC+T     A+  +  M  R ++ +  TY+ LI   C++G+   + R+  E+  +G
Sbjct: 635 LIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNG 694

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD  T +A+    +D+  M  A E L
Sbjct: 695 IPPDYCTHNALFKG-FDKGHMYHAIEYL 721



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 193/366 (52%), Gaps = 12/366 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV---ASLN 159
           D   V+ +M +   EPT  +Y T+L   ++E +   A    + M   G   C+    + N
Sbjct: 226 DVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQG-GGCLLNDVTYN 284

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           V+I  L +  G ++ A K+   M        S+TY  LI  L   G + + + L  EME 
Sbjct: 285 VVISFLAR-EGHLENAAKLVDSM-RLSKKASSFTYNPLITALLERGFVQKVEALQMEMEN 342

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +   PT+VTY ++I+GL +S+ VE A   F EMR+ G+ P++ TY+S+++G CK G   +
Sbjct: 343 EGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKE 402

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A+ LL  +      P ++TY+TL++G C+ G L+EA  + + M  QG  PD   Y  +++
Sbjct: 403 ALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMN 462

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMR 399
               +     A  F DEM+  G+ P+   ++ + RI   ++ G    D ++AFQ+   M 
Sbjct: 463 GSHKVRNLPMAREFFDEMLSKGLQPD--CFAYNTRICAELILG----DTHKAFQLREVMM 516

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            + I  D++TY+ +I   CK G++  +  +  ++V DG  PD  T++ ++ A  +R  + 
Sbjct: 517 LKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLS 576

Query: 460 QAAELL 465
           +A +LL
Sbjct: 577 EARKLL 582



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 161/343 (46%), Gaps = 8/343 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   D  T++ M++    A   + A  LL  + +     T   + ++  GY R+    
Sbjct: 377 AMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLE 436

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A R+ ++M E GC P   +Y  ++    +   L +A  F+  M   G+QP   + N  I
Sbjct: 437 EARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRI 496

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A     G    AF++   M  +G  PD+ TY  +I+GLC+ G + +AK+L  +M +   
Sbjct: 497 CAELI-LGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGL 555

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +TYT LI+  C+   + EA +L   M S G++P+V TY+ L+   C+ G    A  
Sbjct: 556 QPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYG 615

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
             + M+     PN +TY+ L++ LC+ G+   A      M  +GL P+   Y  +I   C
Sbjct: 616 WFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNC 675

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
             G + +A     EM   GI P+  T       HN + +G  K
Sbjct: 676 REGNWADAIRLYFEMHQNGIPPDYCT-------HNALFKGFDK 711



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 137/291 (47%), Gaps = 13/291 (4%)

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           FR +   G  PD      ++  L    +  + + +++EM      PT+VTY +L++   +
Sbjct: 196 FRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLK 255

Query: 239 SKSVEEAMRLFEEMRSKG--VEPNVFTYSSLMDGLCKGGCSSQAMELL-QMMISKRHRPN 295
               +EA  L +EM ++G     N  TY+ ++  L + G    A +L+  M +SK+   +
Sbjct: 256 EGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKK--AS 313

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
             TY+ L+  L + G +Q+   +   M+ +G+ P    Y  II       + + A     
Sbjct: 314 SFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFA 373

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414
           EM   G+ P+ +T+       N+++ G CK  +   A  +   +R   ++   LTY++LI
Sbjct: 374 EMRAMGLLPDLITY-------NSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLI 426

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +C+ G + ++ R+ +E+V  GC PD  T++ +M      R +  A E  
Sbjct: 427 DGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFF 477



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 12/211 (5%)

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
           F+  S         CS+  +   +++      P++   + +L  L    +  +   +   
Sbjct: 174 FSAESQARDATPAACSTLCLAAFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYRE 233

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL--GGITPNRLTWSLHIRIHNTV 379
           M    ++P    Y  ++  F   G+  EA+  L EM    GG   N +T+       N V
Sbjct: 234 MLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTY-------NVV 286

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           +  L +      A ++  SMR  S    S TY+ LIT   ++G + K   +  E+  +G 
Sbjct: 287 ISFLAREGHLENAAKLVDSMR-LSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGI 345

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           +P   T++A++  L    ++ +AA+L   E+
Sbjct: 346 MPTLVTYNAIIHGLLKSEQV-EAAQLKFAEM 375


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 205/416 (49%), Gaps = 9/416 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  T++++I  L  +N+      LL  + K      E  + ++  G+    + L
Sbjct: 256 SKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A ++ ++M  FG  P   ++  ++   + E   K A + +  M   G+ P   S  VL+
Sbjct: 316 IASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLL 375

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN+   D A   +  M   G      TY  +I+GLC+ G + EA  L  EM     
Sbjct: 376 DGLCKNA-EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI 434

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VTY++LING C+    + A  +   +   G+ PN   YS+L+   C+ GC  +A+ 
Sbjct: 435 DPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIR 494

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + MI + H  +  T++ L+  LCK GK+ EA E +  M   G+ P+   +  +I+ + 
Sbjct: 495 IYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYG 554

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNR 401
           + G+  +A +  DEM   G  P   T+        ++++GLCK    R  + +L S+   
Sbjct: 555 NSGEGLKAFSVFDEMTKVGHHPTFFTYG-------SLLKGLCKGGHLREAEKFLKSLHAV 607

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
             +VD++ Y++L+T  CK G++ K+  +  E+V    LPD  T++++++ L  + K
Sbjct: 608 PAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGK 663



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 205/418 (49%), Gaps = 9/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D +TF+++I+ L +   F  +  L+ ++ K     T   + ++   Y +  R   A+ + 
Sbjct: 192 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 251

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D MK  G +    +Y  ++  L   N++   +   R MR+  I P   + N LI     N
Sbjct: 252 DHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGF-SN 310

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A ++  EM + G +P+  T+  LI+G    G   EA ++F  ME K  +P+ V+
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  L++GLC++   + A   +  M+  GV     TY+ ++DGLCK G   +A+ LL  M 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                P+IVTYS L+NG CK G+ + A EI+ R+   GL P+  +Y  +I   C +G  +
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDS 407
           EA    + M+L G T +  T+       N +V  LCK       + ++  M +  I  ++
Sbjct: 491 EAIRIYEAMILEGHTRDHFTF-------NVLVTSLCKAGKVAEAEEFMRCMTSDGILPNT 543

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++  LI  +   G+  K+  + DE+   G  P   T+ +++  L     +R+A + L
Sbjct: 544 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFL 601



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 182/353 (51%), Gaps = 13/353 (3%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C   P  Y  ++ + + E  ++ +   +R M   G  P V + N ++ ++ K SG   + 
Sbjct: 119 CNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK-SGEDVSV 177

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           +   +EM  R   PD  T+  LIN LC  G   ++  L ++ME    +PT+VTY ++++ 
Sbjct: 178 WSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHW 237

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C+    + A+ L + M+SKGV+ +V TY+ L+  LC+    ++   LL+ M  +   PN
Sbjct: 238 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 297

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
            VTY+TL+NG   EGK+  A ++L+ M   GL P+   +  +I      G ++EA     
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFY 357

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKT---DPNRAFQVYLSMRNRSISVDSLTYSS 412
            M   G+TP+ +++ +       ++ GLCK    D  R F  Y+ M+   + V  +TY+ 
Sbjct: 358 MMEAKGLTPSEVSYGV-------LLDGLCKNAEFDLARGF--YMRMKRNGVCVGRITYTG 408

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I   CK G + ++  +++E+  DG  PD  T+SA++       + + A E++
Sbjct: 409 MIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIV 461



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 179/370 (48%), Gaps = 9/370 (2%)

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           C+    ++  + R Y R     D++ +F  M  +G  P+  +   +L  +V+  +    +
Sbjct: 119 CNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVW 178

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
            F + M +  I P VA+ N+LI  LC   G+ + +  + ++M   G  P   TY T+++ 
Sbjct: 179 SFLKEMLKRKICPDVATFNILINVLCA-EGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHW 237

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C+ G+   A EL   M++K     V TY  LI+ LC+S  + +   L  +MR + + PN
Sbjct: 238 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 297

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY++L++G    G    A +LL  M+S    PN VT++ L++G   EG  +EA+++  
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFY 357

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M+ +GL P    YG ++   C   ++  A  F   M   G+   R+T++        ++
Sbjct: 358 MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT-------GMI 410

Query: 381 QGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            GLCK    + A  +   M    I  D +TYS+LI  FCK G    +  IV  +   G  
Sbjct: 411 DGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLS 470

Query: 440 PDEGTWSAVM 449
           P+   +S ++
Sbjct: 471 PNGIIYSTLI 480



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 210/477 (44%), Gaps = 34/477 (7%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           + +A+ I+++   E   G   D+ TF+++++ L  A +   AE+ +  +  +        
Sbjct: 489 LKEAIRIYEAMILE---GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVS 545

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  +  GYG     L A  VFD+M + G  PT  +Y ++L  L +   L+ A +F + + 
Sbjct: 546 FDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLH 605

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +         N L+ A+CK SG +  A  +F EM  R   PDSYTY +LI+GLCR GK 
Sbjct: 606 AVPAAVDTVMYNTLLTAMCK-SGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKT 664

Query: 208 YEAKELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
             A    KE E +    P  V YT  ++G+ ++   +  +   E+M + G  P++ T ++
Sbjct: 665 VIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNA 724

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++DG  + G   +  +LL  M ++   PN+ TY+ LL+G  K   +  +  +   + L G
Sbjct: 725 MIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNG 784

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW----------------- 369
           + PD      ++   C+    +     L   +  G+  +R T+                 
Sbjct: 785 ILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAF 844

Query: 370 -------SLHIRIHNTVVQGLCKT-DPNRAFQ----VYLSMRNRSISVDSLTYSSLITCF 417
                  SL I +       +    + N  FQ    V   M  + IS +S  Y  LI   
Sbjct: 845 DLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGL 904

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           C+ GDI  +  + +E++     P     SA++ AL    K  +A  LL   L  K V
Sbjct: 905 CRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLV 961



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 195/426 (45%), Gaps = 13/426 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G      ++ +++  L    +F  A     R+ +    +    +  +  G  +     
Sbjct: 361 AKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLD 420

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ + ++M + G +P   +Y  ++    +  + K A      +  +G+ P     + LI
Sbjct: 421 EAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+  G +  A +I+  M   G T D +T+  L+  LC+ GK+ EA+E  + M +   
Sbjct: 481 YNCCR-MGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  V++  LING   S    +A  +F+EM   G  P  FTY SL+ GLCKGG   +A +
Sbjct: 540 LPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEK 599

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L+ + +     + V Y+TLL  +CK G L +AV +   M  + + PD+  Y  +IS  C
Sbjct: 600 FLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLC 659

Query: 343 DIGKYQEAANFLDEM-VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL--SMR 399
             GK   A  F  E    G + PN++ ++         V G+ K    +A  +Y    M 
Sbjct: 660 RKGKTVIAILFAKEAEARGNVLPNKVMYT-------CFVDGMFKAGQWKA-GIYFREQMD 711

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N   + D +T +++I  + + G I K+  ++ E+      P+  T++ ++   + +RK  
Sbjct: 712 NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHG-YSKRKDV 770

Query: 460 QAAELL 465
             + LL
Sbjct: 771 STSFLL 776



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 37/284 (13%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
            G   D  TF+++ISK  +  +   A DL+  +      + +D   ++     R HR  ++
Sbjct: 819  GVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQES 878

Query: 105  MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              V  +M + G  P  + YI                                    LI  
Sbjct: 879  RMVLHEMSKQGISPESRKYIG-----------------------------------LING 903

Query: 165  LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            LC+  G +  AF +  EM      P +     ++  L + GK  EA  L + M      P
Sbjct: 904  LCR-VGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVP 962

Query: 225  TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            T+ ++T+L++  C++ +V EA+ L   M + G++ ++ +Y+ L+ GLC  G  + A EL 
Sbjct: 963  TIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELY 1022

Query: 285  QMMISKRHRPNIVTYSTLLNG-LCKEGKLQEAVEILDRMKLQGL 327
            + M       N  TY  L+ G L +E     A  IL  +  +G 
Sbjct: 1023 EEMKGDGFLANATTYKALIRGLLARETAFSGADIILKDLLARGF 1066


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 176/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 110 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 168

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 169 GLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDA 228

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 229 NELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYG 288

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 289 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 348

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 349 DVAYA-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPDTGTYTMIINEFCKKG 398

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  +G  P   T++ +M  
Sbjct: 399 DVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 203/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 12  FRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRK-------------GKG------SAS 52

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 53  AVFAAILE--TKGTQRSDIYVFSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKV 110

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 111 LEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 165

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  RL   M + GV P+V+TYS L++GLCK    
Sbjct: 166 TKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKM 225

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  RM  Q L PD   Y  +
Sbjct: 226 DDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTL 285

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P++ T++       T++ G CK  D + AF+   
Sbjct: 286 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYT-------TLIDGCCKEGDLDTAFEHRK 338

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD GT++ ++     + 
Sbjct: 339 RMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKG 398

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 399 DVWKGSKLL 407



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 144/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 142 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAML 201

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G  P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 202 ASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKN-GRV 260

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I++ M ++   PD  TY TLI GLC+ G + +A +L  EM  K   P   TYT+L
Sbjct: 261 DFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 320

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 321 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGL 380

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 381 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMN 427



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 107/203 (52%), Gaps = 1/203 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M   G  P   ++ T++    +  ++  A   Y+ M    + P + + N LI
Sbjct: 227 DANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLI 286

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +  A  +  EM  +G  PD +TY TLI+G C+ G +  A E  K M  +  
Sbjct: 287 YGLCKK-GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 345

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V Y +LI+GLCQ     +A ++  EM S G++P+  TY+ +++  CK G   +  +
Sbjct: 346 RLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 405

Query: 283 LLQMMISKRHRPNIVTYSTLLNG 305
           LL+ M    H P++VTY+ L+NG
Sbjct: 406 LLKEMQRNGHAPSVVTYNVLMNG 428


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/435 (29%), Positives = 211/435 (48%), Gaps = 57/435 (13%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I +  ++Q++ + K  + A  +F+ A  E     R D   FS ++   + +   R A   
Sbjct: 30  IEAKSLIQVVVSRKGKDSASDVFE-AILETKGTQRSDFYVFSGLMIAYLESGFVRDAVQC 88

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE------PTPKSYITV 126
                + K  +  D     CR   +V   L   R F  + +F  E      P    +  +
Sbjct: 89  FRLTKQHKIRVPFDT----CR---KVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNI 141

Query: 127 LAI-LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           L     +E +++LA   +  + + G++P V S N LI    K  G +D  F++   M   
Sbjct: 142 LMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIK-LGDLDEGFRLKSAMHAS 200

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD YTY  LINGLC+ GK+ EA ELF EM      P  VT+T+LI+G C+++ V+ A
Sbjct: 201 GAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLA 260

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           M ++++M S+G+ P++ TY++L+ GLCK G   Q  +L+  MI    +P+ ++Y+TL++G
Sbjct: 261 MEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDG 320

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
            CKEG L+ A+E+ ++M  + ++ D   Y  +ISC C  G+  +A   L EM+  G+ P 
Sbjct: 321 SCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKP- 379

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
                                                   D+ TY+ +I  FCKK D   
Sbjct: 380 ----------------------------------------DNGTYTMIINEFCKKRDSKT 399

Query: 426 SARIVDELVLDGCLP 440
           +++++ E+  DG LP
Sbjct: 400 ASKLLREMQRDGPLP 414



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 163/292 (55%), Gaps = 8/292 (2%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
            +  ++E+   G     Y +  L+   C+ G++  A+ +F  +      P+VV++ +LIN
Sbjct: 120 VWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLIN 179

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G  +   ++E  RL   M + G +P+V+TYS L++GLCK G   +A EL   M+     P
Sbjct: 180 GYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVP 239

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N VT++TL++G CK  K+  A+EI  +M  QGL PD   Y  +I   C  G+ ++  + +
Sbjct: 240 NGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLI 299

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413
           DEM++ G+ P++++++       T++ G CK  D   A ++   M   SI +D + Y++L
Sbjct: 300 DEMIMNGLKPDKISYT-------TLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTAL 352

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I+C C++G    + +++ E++  G  PD GT++ ++     +R  + A++LL
Sbjct: 353 ISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLL 404



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 151/265 (56%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M   G QP V + ++LI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G +D A ++F EM + G  P+  T+ TLI+G C+  K+  A E++K+M ++  S
Sbjct: 215 GLCK-EGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++   L +EM   G++P+  +Y++L+DG CK G    A+EL
Sbjct: 274 PDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALEL 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI +  R + V Y+ L++ LC+EG+  +A ++L  M   GLKPD G Y  II+ FC 
Sbjct: 334 RNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
               + A+  L EM   G  P  +T
Sbjct: 394 KRDSKTASKLLREMQRDGPLPGVVT 418



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 155/325 (47%), Gaps = 16/325 (4%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCT--PDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           LI+ +    G  D+A  +F  +     T   D Y +  L+      G + +A + F+  +
Sbjct: 35  LIQVVVSRKGK-DSASDVFEAILETKGTQRSDFYVFSGLMIAYLESGFVRDAVQCFRLTK 93

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                    T   ++  L + +  +     ++E+   G   +++ ++ LM   CK G   
Sbjct: 94  QHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMR 153

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A  +   +     RP++V+++TL+NG  K G L E   +   M   G +PD   Y  +I
Sbjct: 154 LAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILI 213

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           +  C  GK  EA    +EM+  G+ PN +T++       T++ G CK +  + A ++Y  
Sbjct: 214 NGLCKEGKLDEANELFNEMLDNGLVPNGVTFT-------TLIHGHCKNEKVDLAMEIYKQ 266

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M ++ +S D +TY++LI   CKKG++ +   ++DE++++G  PD+ +++ ++        
Sbjct: 267 MLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGD 326

Query: 458 MRQAAELLLLELMNKCVEAEVDIQN 482
           +  A     LEL NK ++  + + +
Sbjct: 327 LEIA-----LELRNKMIQESIRLDD 346


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 205/418 (49%), Gaps = 39/418 (9%)

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           +T +I ++      R++  L AM     +   G  P   ++ T++  L  E+++  A + 
Sbjct: 127 LTLNILINCLCNVNRINEGLAAMA---GIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKL 183

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR------GCTPDSYTYGT 196
           +  M+++G  P V +   LIK LC   G ++ A K  +EM N        C P+  +Y  
Sbjct: 184 FMRMQKLGCTPNVVTYGTLIKGLCA-LGNINIALKWHQEMLNDTSPYVFNCRPNVISYSI 242

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +I+GLC++G   EA  LF EM  +   P VVT++ LI+ LC+   V +A +L E M   G
Sbjct: 243 IIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIG 302

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           + PN+FTY+SL+ G C  G  + A EL   M SK + P++++Y+ L+NG CK  K++EA+
Sbjct: 303 IVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAM 362

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN-------------------FLDEM 357
           ++ + M   G+ PD    G ++      GK  +A                     FLD +
Sbjct: 363 KLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGL 422

Query: 358 VLGGITPNRL---------TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
              G     +            L I     ++ GLCK      A++++  +    I  D+
Sbjct: 423 CKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDA 482

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + YSS+I  FCKKG + K+  +  ++  +GC PD  T+S +M   ++  K+ +  +LL
Sbjct: 483 MAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLL 540



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 204/428 (47%), Gaps = 15/428 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  TF+ +I  L   ++   A  L  R+ K  C      + ++ +G   +     A
Sbjct: 156 GYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIA 215

Query: 105 MRVFDKMKE------FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           ++   +M        F C P   SY  ++  L +    + A   +  M + G+QP V + 
Sbjct: 216 LKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTF 275

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           +VLI  LCK  G +  A K+   M   G  P+ +TY +LI G C +G +  AKELF  M 
Sbjct: 276 SVLIDMLCK-EGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMP 334

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +K   P V++Y  LING C++  VEEAM+LF EM   G+ P+V T   L+  L   G   
Sbjct: 335 SKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVD 394

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A EL +++       ++      L+GLCK G + EA+++ + ++   +K D   +G +I
Sbjct: 395 DAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLI 454

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
              C  GK + A    +++   GI P+ + +S       +++ G CK    ++A  ++  
Sbjct: 455 DGLCKAGKLETAWELFEKLYEEGIQPDAMAYS-------SMIHGFCKKGQVDKANILFQK 507

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M     S D +TYS L+  F +   + K  +++  ++     PD+G ++ V   +    K
Sbjct: 508 MEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEK 567

Query: 458 MRQAAELL 465
            ++  +LL
Sbjct: 568 YKEWLDLL 575



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 193/409 (47%), Gaps = 36/409 (8%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  +  G  ++        ++ +M   G  P   +   ++  L   N++         + 
Sbjct: 94  FNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIM 153

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G  P V +   LIK LC     ++A  K+F  M   GCTP+  TYGTLI GLC LG I
Sbjct: 154 RRGYIPDVVTFTTLIKGLCVEHRIIEAT-KLFMRMQKLGCTPNVVTYGTLIKGLCALGNI 212

Query: 208 YEAKELFKEMETKA------CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
             A +  +EM          C P V++Y+ +I+GLC+  + EEA+ LF EM  +GV+PNV
Sbjct: 213 NIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNV 272

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            T+S L+D LCK G   +A +LL+MMI     PN+ TY++L+ G C  G L  A E+   
Sbjct: 273 VTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVS 332

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------- 374
           M  +G +PD   Y  +I+ +C   K +EA    +EM+  G+ P+  T  + ++       
Sbjct: 333 MPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGK 392

Query: 375 ---------------------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSS 412
                                I    + GLCK      A +++  + + ++ +D  T+  
Sbjct: 393 VDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGC 452

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           LI   CK G +  +  + ++L  +G  PD   +S+++     + ++ +A
Sbjct: 453 LIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKA 501



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 167/318 (52%), Gaps = 15/318 (4%)

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + S N L+  L K        F ++++M   G  PD  T   LIN LC + +I E     
Sbjct: 91  IFSFNRLLAGLAKIE-HYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAM 149

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
             +  +   P VVT+T+LI GLC    + EA +LF  M+  G  PNV TY +L+ GLC  
Sbjct: 150 AGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCAL 209

Query: 275 GCSSQAMELLQMMISKRH------RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           G  + A++  Q M++         RPN+++YS +++GLCK G  +EA+ + + M  QG++
Sbjct: 210 GNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQ 269

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D 387
           P+   +  +I   C  G+  +A   L+ M+  GI PN  T++       ++++G C   D
Sbjct: 270 PNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYT-------SLIKGFCLVGD 322

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            N A ++++SM ++    D ++Y+ LI  +CK   + ++ ++ +E++  G  PD  T   
Sbjct: 323 LNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGV 382

Query: 448 VMTALWDRRKMRQAAELL 465
           ++ AL+   K+  A EL 
Sbjct: 383 LLKALFLAGKVDDAKELF 400



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 43/333 (12%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +A+ +F+    +   G + +  TFS++I  L    Q   A+ LL+ +   +  I  ++F 
Sbjct: 255 EAICLFNEMVDQ---GVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMM--IQIGIVPNLFT 309

Query: 90  --SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
             S+ +G+  V     A  +F  M   G EP   SY  ++    +  +++ A + +  M 
Sbjct: 310 YTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEML 369

Query: 148 EIGIQPCVASLNVLIKAL-----------------------------------CKNSGTM 172
            +G+ P V +  VL+KAL                                   CKN G +
Sbjct: 370 HVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKN-GYI 428

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
             A K+F E+ +     D  T+G LI+GLC+ GK+  A ELF+++  +   P  + Y+S+
Sbjct: 429 FEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSM 488

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   V++A  LF++M   G  P++ TYS LM G  +     + ++LL  MI K  
Sbjct: 489 IHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDV 548

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            P+   Y+ + + +CK+ K +E +++L R  +Q
Sbjct: 549 WPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQ 581



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 138/268 (51%), Gaps = 9/268 (3%)

Query: 202 CRLGKI--YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           C+ G I   +A + F  M       ++ ++  L+ GL + +   +   L+++M   G+ P
Sbjct: 70  CKTGSISVTQAHQFFDLMMR-----SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWP 124

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           ++ T + L++ LC     ++ +  +  ++ + + P++VT++TL+ GLC E ++ EA ++ 
Sbjct: 125 DLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLF 184

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
            RM+  G  P+   YG +I   C +G    A  +  EM L   +P       ++  ++ +
Sbjct: 185 MRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEM-LNDTSPYVFNCRPNVISYSII 243

Query: 380 VQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           + GLCK  +   A  ++  M ++ +  + +T+S LI   CK+G + K+ ++++ ++  G 
Sbjct: 244 IDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGI 303

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELLL 466
           +P+  T+++++        +  A EL +
Sbjct: 304 VPNLFTYTSLIKGFCLVGDLNSAKELFV 331



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 88/155 (56%), Gaps = 1/155 (0%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A + +  +    ++  + +   LI  LCK +G ++ A+++F ++   G  PD+  Y ++I
Sbjct: 431 AMKLFNELESYNMKLDIETFGCLIDGLCK-AGKLETAWELFEKLYEEGIQPDAMAYSSMI 489

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +G C+ G++ +A  LF++ME   CSP ++TY+ L+ G  +S  +E+ ++L   M  K V 
Sbjct: 490 HGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVW 549

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           P+   Y+ + D +CK     + ++LLQ    ++HR
Sbjct: 550 PDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHR 584


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 183/393 (46%), Gaps = 77/393 (19%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F S+  GY   +R  DA+ +FD++   G +P   +Y T++  L +   L  A   +  M 
Sbjct: 156 FTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMG 215

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR---------------------- 185
             G +P V + N L+  LC+     DAA+ + R+M  R                      
Sbjct: 216 TNGSRPNVVTYNALVTGLCEIGRWGDAAW-LLRDMMKRRIEPNVITFTALIDAFVKVGKL 274

Query: 186 -------------GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
                           PD +TYG+LINGLC  G + EA+++F  ME   C P  V YT+L
Sbjct: 275 MEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTL 334

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+SK VE+ M++F EM  KGV  N  TY+ L+ G C  G    A E+   M S+R 
Sbjct: 335 IHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRA 394

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            P+I TY+ LL+GLC  GK+++A+ I + M+ + +  +   Y  II   C +GK ++A +
Sbjct: 395 PPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFD 454

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSS 412
               +   G+ PN +T                                         Y++
Sbjct: 455 LFCSLFSKGMKPNVIT-----------------------------------------YTT 473

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
           +I+ FC++G IH++  +  ++  DG LP+E  +
Sbjct: 474 MISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 194/380 (51%), Gaps = 14/380 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F +M      P+   +  +L+++ + N+  +    +  M+ +GI P + + N+++
Sbjct: 66  DALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVM 125

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             +C +S    A+     +M   G  PD  T+ +L+NG C   +I +A  LF ++     
Sbjct: 126 HCVCLSSQPCRAS-CFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGF 184

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTYT+LI  LC+++ +  A+ LF +M + G  PNV TY++L+ GLC+ G    A  
Sbjct: 185 KPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAW 244

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+ +R  PN++T++ L++   K GKL EA E+ + M    + PD   YG +I+  C
Sbjct: 245 LLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLC 304

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G   EA      M   G  PN +       I+ T++ G CK+       +++  M  +
Sbjct: 305 MYGLLDEARQMFYLMERNGCYPNEV-------IYTTLIHGFCKSKRVEDGMKIFYEMSQK 357

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  +++TY+ LI  +C  G    +  + +++      PD  T++ ++  L    K+ +A
Sbjct: 358 GVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKA 417

Query: 462 AELLLLELMNKCVEAEVDIQ 481
             L++ E M K    E+DI 
Sbjct: 418 --LMIFEYMRK---REMDIN 432



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 184/367 (50%), Gaps = 9/367 (2%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           +P  A     KM + G EP   ++ ++L      N+++ A   +  +  +G +P V +  
Sbjct: 133 QPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYT 192

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            LI+ LCKN   ++ A ++F +M   G  P+  TY  L+ GLC +G+  +A  L ++M  
Sbjct: 193 TLIRCLCKNR-HLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMK 251

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +   P V+T+T+LI+   +   + EA  L+  M    V P+VFTY SL++GLC  G   +
Sbjct: 252 RRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDE 311

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A ++  +M      PN V Y+TL++G CK  ++++ ++I   M  +G+  +   Y  +I 
Sbjct: 312 ARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQ 371

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSM 398
            +C +G+   A    ++M      P+       IR +N ++ GLC      +A  ++  M
Sbjct: 372 GYCLVGRPDVAQEVFNQMSSRRAPPD-------IRTYNVLLDGLCCNGKVEKALMIFEYM 424

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           R R + ++ +TY+ +I   CK G +  +  +   L   G  P+  T++ +++    R  +
Sbjct: 425 RKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLI 484

Query: 459 RQAAELL 465
            +A  L 
Sbjct: 485 HEADSLF 491



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 4/338 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +  A+ +FD        GF+ +  T++ +I  L        A +L +++           
Sbjct: 169 IEDAIALFDQILGM---GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVT 225

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G   + R  DA  +   M +   EP   ++  ++   V+  +L  A   Y  M 
Sbjct: 226 YNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMI 285

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           ++ + P V +   LI  LC   G +D A ++F  M   GC P+   Y TLI+G C+  ++
Sbjct: 286 QMSVYPDVFTYGSLINGLCM-YGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRV 344

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +  ++F EM  K      +TYT LI G C     + A  +F +M S+   P++ TY+ L
Sbjct: 345 EDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVL 404

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGLC  G   +A+ + + M  +    NIVTY+ ++ G+CK GK+++A ++   +  +G+
Sbjct: 405 LDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGM 464

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           KP+   Y  +IS FC  G   EA +   +M   G  PN
Sbjct: 465 KPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 167/322 (51%), Gaps = 4/322 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +++ +   + +N A+ +F+       NG R +  T++ +++ L    ++  A  L
Sbjct: 189 VTYTTLIRCLCKNRHLNHAVELFNQMGT---NGSRPNVVTYNALVTGLCEIGRWGDAAWL 245

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L  + K + +     F ++   + +V + ++A  +++ M +    P   +Y +++  L  
Sbjct: 246 LRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCM 305

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              L  A + +  M   G  P       LI   CK S  ++   KIF EM  +G   ++ 
Sbjct: 306 YGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCK-SKRVEDGMKIFYEMSQKGVVANTI 364

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY  LI G C +G+   A+E+F +M ++   P + TY  L++GLC +  VE+A+ +FE M
Sbjct: 365 TYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYM 424

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
           R + ++ N+ TY+ ++ G+CK G    A +L   + SK  +PN++TY+T+++G C+ G +
Sbjct: 425 RKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLI 484

Query: 313 QEAVEILDRMKLQGLKPDAGLY 334
            EA  +  +MK  G  P+  +Y
Sbjct: 485 HEADSLFKKMKEDGFLPNESVY 506



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 123/269 (45%), Gaps = 44/269 (16%)

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           L NGL  L +  +A +LF  M      P+++ +T L++ + +    +  + LFE+M+  G
Sbjct: 55  LRNGLHNL-QFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILG 113

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           + P + T + +M  +C    SSQ                           C  GK+    
Sbjct: 114 IPPLLCTCNIVMHCVC---LSSQPCR----------------------ASCFLGKM---- 144

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
                MKL G +PD   +  +++ +C   + ++A    D+++  G  PN +T++      
Sbjct: 145 -----MKL-GFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYT------ 192

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            T+++ LCK    N A +++  M       + +TY++L+T  C+ G    +A ++ +++ 
Sbjct: 193 -TLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMK 251

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
               P+  T++A++ A     K+ +A EL
Sbjct: 252 RRIEPNVITFTALIDAFVKVGKLMEAKEL 280


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 211/429 (49%), Gaps = 27/429 (6%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPA-----EDLLDRVNKEKCDITEDIFLS--IC-RGY 95
           NGF+H   ++ ++   L  A  +  A     E +L +   + CD+ + ++ +  +C  G+
Sbjct: 4   NGFKHTIESYCIVAHILFCARMYYDANRILREMVLSKAELKDCDVFDVLWSTRNVCVPGF 63

Query: 96  GRVHRPL----------DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           G                +A++ F KMK     P  +S   +L       +     RF++ 
Sbjct: 64  GVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKD 123

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   G +P V + N++I  +CK  G ++AA  +F EM  RG  PD+ TY ++I+G  ++G
Sbjct: 124 MIGAGSKPTVFTYNIMIDCMCK-EGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVG 182

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ +    F+EM++ +C P V+TY +LIN  C+   + + +  F EM+  G++PNV +YS
Sbjct: 183 RLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYS 242

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+D  CK     QA++    M      PN  TY++L++  CK G L +A  + D M   
Sbjct: 243 TLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQV 302

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G++ +   Y  +I   CD+ + +EA     +MV  G+ PN  +++        ++ G  K
Sbjct: 303 GVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYT-------ALIHGFVK 355

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             + +RA ++   M+ R I  D L Y + I   C    I  +  +++E+   G   +   
Sbjct: 356 AKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFI 415

Query: 445 WSAVMTALW 453
           ++ +M A +
Sbjct: 416 YTTLMDAYF 424



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 200/450 (44%), Gaps = 71/450 (15%)

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           + R+ +     R F  M   G +PT  +Y  ++  + +E  ++ A   +  M+  G+ P 
Sbjct: 108 FARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPD 167

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             + N +I    K  G +D     F EM +  C PD  TY TLIN  C+ GK+ +  E F
Sbjct: 168 TVTYNSMIDGYGK-VGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFF 226

Query: 215 KEMETKACSPTVV-----------------------------------TYTSLINGLCQS 239
           +EM+     P VV                                   TYTSL++  C+ 
Sbjct: 227 REMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKI 286

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
            ++ +A RL +EM   GVE NV TY++L+DGLC      +A EL   M++    PN+ +Y
Sbjct: 287 GNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASY 346

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + L++G  K   +  A+E+LD MK +G+KPD  LYG  I   C + K + A   ++EM  
Sbjct: 347 TALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQE 406

Query: 360 GGITPNRLTWSL----HIRIHN------------------------TVVQGLCKTD-PNR 390
            GI  N   ++     + +  N                         ++ GLCK    ++
Sbjct: 407 KGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSK 466

Query: 391 AFQVYLSMRNR-SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           A   +  + N   +  ++  Y+++I   CK+  +  +  + +++   G +PD   +++++
Sbjct: 467 AIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLI 526

Query: 450 TALWDRRKMRQAAELLLLELMNKCVEAEVD 479
                  K++Q   +  L L +K  E  V+
Sbjct: 527 DG-----KLKQGNVVQALALRDKMAEIGVE 551



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 155/314 (49%), Gaps = 9/314 (2%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P     + L   L +     + A + F +M      P + +   L++   RLGK    K 
Sbjct: 61  PGFGVFDALFSVLIEED-MFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKR 119

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            FK+M      PTV TY  +I+ +C+   +E A  LFEEM+ +G+ P+  TY+S++DG  
Sbjct: 120 FFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYG 179

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G     +   + M S    P+++TY+TL+N  CK GKL + +E    MK  GLKP+  
Sbjct: 180 KVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVV 239

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRA 391
            Y  ++  FC     Q+A  F  +M   G+ PN  T++       ++V   CK  + + A
Sbjct: 240 SYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYT-------SLVDAYCKIGNLSDA 292

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           F++   M    +  + +TY++LI   C    I ++  +  ++V  G +P+  +++A++  
Sbjct: 293 FRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHG 352

Query: 452 LWDRRKMRQAAELL 465
               + M +A ELL
Sbjct: 353 FVKAKNMDRALELL 366



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 171/389 (43%), Gaps = 70/389 (17%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+++MI  +        A  L + +           + S+  GYG+V R  D +  F++M
Sbjct: 135 TYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEM 194

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS-- 169
           K   CEP   +Y T++    +  +L     F+R M++ G++P V S + L+ A CK    
Sbjct: 195 KSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMM 254

Query: 170 --------------------------------GTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                                           G +  AF++  EM   G   +  TY  L
Sbjct: 255 QQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTAL 314

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+GLC + +I EA+ELF +M T    P + +YT+LI+G  ++K+++ A+ L +EM+ +G+
Sbjct: 315 IDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGI 374

Query: 258 EP-----------------------------------NVFTYSSLMDGLCKGGCSSQAME 282
           +P                                   N F Y++LMD   K    S+ + 
Sbjct: 375 KPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLH 434

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-GLKPDAGLYGKIISCF 341
           LL+ M+        VT+  L++GLCK   + +A++   R+    GL+ +A +Y  +I   
Sbjct: 435 LLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGL 494

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           C   + + A    ++M   G+ P+R  ++
Sbjct: 495 CKEDQVEAATTLFEQMAQKGLVPDRTAYT 523



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 161/356 (45%), Gaps = 26/356 (7%)

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M   G + T +SY  V  IL        A R  R M             VL KA  K+  
Sbjct: 1   MNRNGFKHTIESYCIVAHILFCARMYYDANRILREM-------------VLSKAELKDCD 47

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             D  +          C P    +  L + L       EA + F +M+     P   +  
Sbjct: 48  VFDVLWST-----RNVCVPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCN 102

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            L++   +    +   R F++M   G +P VFTY+ ++D +CK G    A  L + M  +
Sbjct: 103 GLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFR 162

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P+ VTY+++++G  K G+L + V   + MK    +PD   Y  +I+CFC  GK  + 
Sbjct: 163 GLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKG 222

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLT 409
             F  EM   G+ PN +++S       T+V   CK D   +A + Y+ MR   +  +  T
Sbjct: 223 LEFFREMKQSGLKPNVVSYS-------TLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHT 275

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y+SL+  +CK G++  + R+ DE+   G   +  T++A++  L D  ++++A EL 
Sbjct: 276 YTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELF 331



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 129/284 (45%), Gaps = 37/284 (13%)

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
            E  + S+   Y ++    DA R+ D+M + G E    +Y  ++  L +  ++K A   +
Sbjct: 272 NEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELF 331

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M   G+ P +AS   LI    K +  MD A ++  EM  RG  PD   YGT I  LC 
Sbjct: 332 GKMVTAGVIPNLASYTALIHGFVK-AKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCG 390

Query: 204 LGKIYEAKELFKEMETKACSP-----------------------------------TVVT 228
           L KI  AK +  EM+ K                                       T VT
Sbjct: 391 LEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVT 450

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +  LI+GLC++K V +A+  F  + +  G++ N   Y++++DGLCK      A  L + M
Sbjct: 451 FCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQM 510

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
             K   P+   Y++L++G  K+G + +A+ + D+M   G++  A
Sbjct: 511 AQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVESGA 554



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 37/243 (15%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I  L    + + AE+L  ++           + ++  G+ +      A+ + D+M
Sbjct: 310 TYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEM 369

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP------------------ 153
           K  G +P    Y T +  L    +++ A      M+E GI+                   
Sbjct: 370 KGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENP 429

Query: 154 -----------------CVASLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYG 195
                               +  VLI  LCKN   +  A   F  + N  G   ++  Y 
Sbjct: 430 SEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNK-LVSKAIDYFGRISNDFGLQANAAIYT 488

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            +I+GLC+  ++  A  LF++M  K   P    YTSLI+G  +  +V +A+ L ++M   
Sbjct: 489 AMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEI 548

Query: 256 GVE 258
           GVE
Sbjct: 549 GVE 551


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 175/328 (53%), Gaps = 13/328 (3%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M EIG+ P V + N LI  LC     ++AA  +  +M  +G   D  TYGT++NG+C++G
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAA-ALVNKMVGKGLHIDVVTYGTIVNGMCKMG 59

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
               A  L  +ME     P VV Y+++I+ LC+     +A  LF EM  KG+ PNVFTY+
Sbjct: 60  DTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYN 119

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            ++DG C  G  S A  LL+ MI +   P+++T++ L++   KEGKL EA ++ D M  +
Sbjct: 120 CMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHR 179

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
            + PD   Y  +I  FC   ++ +A +  D M     +P+ +T+       NT++   C+
Sbjct: 180 CIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTF-------NTIIDVYCR 228

Query: 386 TD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               +   Q+   +  R +  ++ TY++LI  FC+  +++ +  +  E++  G  PD  T
Sbjct: 229 AKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTIT 288

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNK 472
            + ++    +  K+ +A EL  +  M+K
Sbjct: 289 CNILLYGFCENEKLEEALELFEVIQMSK 316



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 205/422 (48%), Gaps = 13/422 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+  +++ +      + A +LL ++ +        I+ +I     +     DA
Sbjct: 40  GLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDA 99

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F +M E G  P   +Y  ++       +   A R  R M E  I P V + N LI A
Sbjct: 100 QYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISA 159

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G +  A K+  EM +R   PD+ TY ++I G C+  +  +AK +F  M     SP
Sbjct: 160 SVK-EGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASP 214

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVT+ ++I+  C++K V+E M+L  E+  +G+  N  TY++L+ G C+    + A +L 
Sbjct: 215 DVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLF 274

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           Q MIS    P+ +T + LL G C+  KL+EA+E+ + +++  +  D   Y  II   C  
Sbjct: 275 QEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKG 334

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSI 403
            K  EA +    + + G+ P+       ++ +N ++ G C K+  + A  ++  M++   
Sbjct: 335 SKVDEAWDLFCSLPIHGVEPD-------VQTYNVMISGFCGKSAISDANVLFHKMKDNGH 387

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D+ TY++LI    K G+I KS  ++ E+  +G   D  T   V   + D R  +  ++
Sbjct: 388 EPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRLDKSFSD 447

Query: 464 LL 465
           +L
Sbjct: 448 ML 449



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 183/367 (49%), Gaps = 13/367 (3%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R L+A  + +KM   G      +Y T++  + +    K A      M E  I+P V   +
Sbjct: 25  RVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYS 84

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I  LCK+    DA + +F EM  +G  P+ +TY  +I+G C  G+  +A+ L ++M  
Sbjct: 85  AIIDRLCKDGHHSDAQY-LFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE 143

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +  +P V+T+ +LI+   +   + EA +L +EM  + + P+  TY+S++ G CK      
Sbjct: 144 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 203

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  +  +M S    P++VT++T+++  C+  ++ E +++L  +  +GL  +   Y  +I 
Sbjct: 204 AKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 259

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
            FC++     A +   EM+  G+ P+ +T        N ++ G C+ +    A +++  +
Sbjct: 260 GFCEVDNLNAAQDLFQEMISHGVCPDTITC-------NILLYGFCENEKLEEALELFEVI 312

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           +   I +D++ Y+ +I   CK   + ++  +   L + G  PD  T++ +++    +  +
Sbjct: 313 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAI 372

Query: 459 RQAAELL 465
             A  L 
Sbjct: 373 SDANVLF 379



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 1/240 (0%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           FD A   +      D  TF+ +I     A +      LL  +++         + ++  G
Sbjct: 201 FDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHG 260

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
           +  V     A  +F +M   G  P   +   +L    E  +L+ A   +  ++   I   
Sbjct: 261 FCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLD 320

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             + N++I  +CK S  +D A+ +F  +P  G  PD  TY  +I+G C    I +A  LF
Sbjct: 321 TVAYNIIIHGMCKGS-KVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLF 379

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            +M+     P   TY +LI G  ++  +++++ L  EMRS G   + FT   + D +  G
Sbjct: 380 HKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDG 439


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 186/378 (49%), Gaps = 9/378 (2%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-RE 148
           ++C+  G+V    +A+ +F  M      P+ K +  +L ++V       A    +H+   
Sbjct: 47  NLCKS-GKVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAISLVKHIFSS 105

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
           +GI+    +LN++I  LC+    +   F +   M   G  P   T   LINGLC  G + 
Sbjct: 106 LGIEADTITLNIVINCLCRLK-LVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVA 164

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A  L   ME       V TY  LINGLC++     A+    +M  +  +PNV  YS++M
Sbjct: 165 QAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIM 224

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DGLCK G  S+A+ L   M  K  RPN+VTY+ L+ GLC  G+ +E   +LD M   G++
Sbjct: 225 DGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMR 284

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
            D      ++  FC  GK  +A + +  M+L G  P+  T++  I I+        +   
Sbjct: 285 LDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIY------CLQNKM 338

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           N A +V+  M +R    D + ++SLI  +CK  +I+K   +++E+   G +PD  TW+ +
Sbjct: 339 NEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTL 398

Query: 449 MTALWDRRKMRQAAELLL 466
           +       +   A EL L
Sbjct: 399 IGGFCQAGRPLAAKELFL 416



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 195/415 (46%), Gaps = 9/415 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T + +I+ L        A  L+D + K +  +    +  +  G  +    L A+    KM
Sbjct: 149 TLTALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKM 208

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +E   +P    Y T++  L ++  +  A      M   G++P + +   LI+ LC N G 
Sbjct: 209 EERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLC-NFGR 267

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
                 +  EM   G   D  T   L++  C+ GK+ +AK +   M      P V TY S
Sbjct: 268 WKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNS 327

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+  C    + EAMR+F  M S+G  P++  ++SL+ G CK    ++ M LL+ M    
Sbjct: 328 LIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMG 387

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++VT++TL+ G C+ G+   A E+   M   G  P+      I+   C      EA 
Sbjct: 388 FVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAV 447

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           +  + M        +    L+I I++ ++ G+C     N A++++ S+  + + ++  TY
Sbjct: 448 SLAEAM-------EKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTY 500

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +I   CK+G + K+  ++  +  +GCLPD  T++  +  L  ++++ ++ + L
Sbjct: 501 TIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYL 555



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 198/430 (46%), Gaps = 19/430 (4%)

Query: 5   TMFKWSTKITSAQVLQLIRA---EKDVNKALVIFDSATAEYANGFRH--DNSTFSLMISK 59
           TMFK   + T   +  LI     + +V +A+ + D     +    R+  D  T+ ++I+ 
Sbjct: 137 TMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVD-----HMEKMRYPLDVYTYGVLING 191

Query: 60  LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
           L        A + L ++ +        ++ +I  G  +     +A+ +  +M   G  P 
Sbjct: 192 LCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPN 251

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
             +Y  ++  L    + K        M ++G++  + +LN+L+ A CK    M A   + 
Sbjct: 252 LVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAK-SVI 310

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   G  PD +TY +LI+  C   K+ EA  +F  M ++ C P +V +TSLI+G C+ 
Sbjct: 311 GFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKD 370

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
           K++ + M L EEM   G  P+V T+++L+ G C+ G    A EL   M      PN+ T 
Sbjct: 371 KNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTC 430

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +L+GLCK   L EAV + + M+   L  +  +Y  ++   C  GK   A      +  
Sbjct: 431 AVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPG 490

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            G+  N  T+++ I+       GLCK    ++A  + ++M       D+ TY+  +    
Sbjct: 491 KGLQINVYTYTIMIK-------GLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLL 543

Query: 419 KKGDIHKSAR 428
            K +I +S +
Sbjct: 544 TKKEIARSIK 553


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 220/449 (48%), Gaps = 52/449 (11%)

Query: 24  AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF-RPAEDLLDRVNKEKCD 82
           AEK+   AL +F+SA+   +    H    F  ++ +L + ++       ++D V  +KC 
Sbjct: 22  AEKNPLSALSLFESASRNKS----HSAHVFHHILRRLAADSRLVSHVSRIVDIVKAQKCP 77

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILVEENQLKLAFR 141
             ED+ L++ + Y +      A+  F  M++ FGC+P  +SY T+L   VE N+   A  
Sbjct: 78  CKEDVALTVIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAES 137

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
           F R+   + + P + + N+LIK  CK    ++ A  +   M ++   PD ++YGTLING+
Sbjct: 138 FSRYFESMDVSPNLQTYNILIKISCKKQ-QIEKAISLLDWMWSQNLKPDVFSYGTLINGM 196

Query: 202 CRLGKIYEAKELFKEME----------------------------------TKACS--PT 225
            ++G +  A ++F EM                                    K CS  P 
Sbjct: 197 VKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPN 256

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VVTY  +INGLC+    +E++ ++E M     E ++FTYSSL+ GLC+ G    A+ + +
Sbjct: 257 VVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYK 316

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            ++      + VT++ +LNG C+ GK++E+ E+   M  +  +     Y  +I    + G
Sbjct: 317 EIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVS-YNILIKGLFENG 375

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
           K +EA +  + +   G  P   T+ +       ++ GLCK    N+A +++    +    
Sbjct: 376 KVEEAISIWELLCKKGCRPESTTYGV-------LIHGLCKNGRLNKALKIFKEAEDGPGK 428

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           +D+  YSS++   CK+G + ++  IV+++
Sbjct: 429 LDAYAYSSMVDGLCKEGRMDEAISIVNQM 457



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 213/451 (47%), Gaps = 48/451 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLDAMRVFD 109
           T++++I       Q   A  LLD +  +  ++  D+F   ++  G  +V   L A++VFD
Sbjct: 153 TYNILIKISCKKQQIEKAISLLDWMWSQ--NLKPDVFSYGTLINGMVKVGDLLGALKVFD 210

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLIKALCK- 167
           +M   G       Y  ++    +          + R +++  + P V + N++I  LCK 
Sbjct: 211 EMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKC 270

Query: 168 ---------------------------------NSGTMDAAFKIFREMPNRGCTPDSYTY 194
                                             +G +D A ++++E+       D+ T+
Sbjct: 271 GRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTH 330

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
             ++NG CR GKI E+ EL+  M  + C  TVV+Y  LI GL ++  VEEA+ ++E +  
Sbjct: 331 NAMLNGFCRAGKIKESFELWMVMGKENCQ-TVVSYNILIKGLFENGKVEEAISIWELLCK 389

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           KG  P   TY  L+ GLCK G  ++A+++ +       + +   YS++++GLCKEG++ E
Sbjct: 390 KGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDE 449

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+ I+++M  +G K D  +   +I+ F    K ++A NF  EM   G +P  ++      
Sbjct: 450 AISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVS------ 503

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            +NT+++GLCK +  + A+     M  +    D +T S L+   C++  I  +  +  + 
Sbjct: 504 -YNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQA 562

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +  G  PD   ++ +M  L    K+  A +L
Sbjct: 563 LDKGFKPDITMYNILMHGLCSVCKLEDALQL 593



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 159/323 (49%), Gaps = 1/323 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +++++I  L    +   A  + + + K+ C      +  +  G  +  R   A+++F + 
Sbjct: 363 SYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEA 422

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           ++   +    +Y +++  L +E ++  A      M + G +      N LI    + S  
Sbjct: 423 EDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKL 482

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            DA    FREM  +GC+P   +Y TLI GLC+  +  EA    KEM  K   P ++T + 
Sbjct: 483 EDA-INFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSL 541

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++GLCQ K +E A+ L+++   KG +P++  Y+ LM GLC       A++L   M    
Sbjct: 542 LMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRST 601

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN+VT +TL+ GL K    ++A EI D +   GL PD   Y   I   C   +  +A 
Sbjct: 602 CVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAI 661

Query: 352 NFLDEMVLGGITPNRLTWSLHIR 374
            FL++ +  GI P  +TW++ +R
Sbjct: 662 EFLNDALNRGILPTAVTWNILVR 684



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 161/352 (45%), Gaps = 48/352 (13%)

Query: 153 PCVASLNV-LIKALCKNSGTMDAAFKIFREMPN-RGCTPDSYTYGTLINGLCRLGKIYEA 210
           PC   + + +IKA  KN  + + A   F+ M +  GC P   +Y TL+N    L +   A
Sbjct: 77  PCKEDVALTVIKAYAKNKMS-NKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRA 135

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           +   +  E+   SP + TY  LI   C+ + +E+A+ L + M S+ ++P+VF+Y +L++G
Sbjct: 136 ESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLING 195

Query: 271 LCKGGCSSQAMELLQMMISK-----------------RH-------------------RP 294
           + K G    A+++   M  +                 +H                    P
Sbjct: 196 MVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYP 255

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N+VTY+ ++NGLCK G+  E++EI +RM     + D   Y  +I   C+ G    A    
Sbjct: 256 NVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVY 315

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
            E+V   +  + +T       HN ++ G C+      +F++++ M   +     ++Y+ L
Sbjct: 316 KEIVESSLVVDAVT-------HNAMLNGFCRAGKIKESFELWMVMGKENCQT-VVSYNIL 367

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I    + G + ++  I + L   GC P+  T+  ++  L    ++ +A ++ 
Sbjct: 368 IKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIF 419



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 128/262 (48%), Gaps = 10/262 (3%)

Query: 209 EAKELFKEME-TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           +A + F+ M+    C P V +Y +L+N   +    + A        S  V PN+ TY+ L
Sbjct: 98  KALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNIL 157

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +   CK     +A+ LL  M S+  +P++ +Y TL+NG+ K G L  A+++ D M ++G+
Sbjct: 158 IKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGV 217

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG-GITPNRLTWSLHIRIHNTVVQGLCKT 386
             D   Y  +I  F   G Y +     + +V    + PN +T       +N ++ GLCK 
Sbjct: 218 VADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVT-------YNIMINGLCKC 270

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              + + +++  M       D  TYSSLI   C+ G+I  + R+  E+V    + D  T 
Sbjct: 271 GRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTH 330

Query: 446 SAVMTALWDRRKMRQAAELLLL 467
           +A++       K++++ EL ++
Sbjct: 331 NAMLNGFCRAGKIKESFELWMV 352


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 219/465 (47%), Gaps = 30/465 (6%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNK-- 78
           L+R + D   AL  F     +   G +     +  ++  L  + +F+ A   L  + K  
Sbjct: 98  LLRCQSDSISALTFFSWVKNDL--GLQPSIQNYCFLVHILAWSKEFKEAMKFLTELIKLV 155

Query: 79  EKCDITEDIFLSI-----------------CRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121
           + C   ED+F ++                  + Y R     +    F K+ E GC P+  
Sbjct: 156 KDCSFNEDVFQTLLFCCQDCNWDPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVI 215

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           S   +L  L++ N++   ++ Y+ M  +GI P   + N+L    C++ G +D        
Sbjct: 216 SCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQD-GDVDKVNDFLER 274

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M   G  PD  TY TLI+  CR G++ +A  L++ M  +   P +V+YT+L+NGLC+   
Sbjct: 275 MEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGK 334

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V EA +LF  M  +G+ P++ ++++L+ G CK G   ++  LL  MI     P+ VT   
Sbjct: 335 VREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQV 394

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L+ G  KE ++  A+ ++  ++  G+     +Y  ++   C+ G+   A + L  +   G
Sbjct: 395 LIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRG 454

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
             P        + I+N +++ LCK+D    A  V   M +R+I   ++TY +LI C C+ 
Sbjct: 455 YVPG-------VEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRT 507

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
               ++  +++E++  G LPD     A+M      R + +A  LL
Sbjct: 508 SRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLL 552



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 171/362 (47%), Gaps = 11/362 (3%)

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            ++M+E G EP   +Y T+++    + +L  AF  YR M    + P + S   L+  LCK
Sbjct: 272 LERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCK 331

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G +  A ++F  M +RG  PD  ++ TLI G C+ GK+ E++ L  EM      P  V
Sbjct: 332 -EGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKV 390

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T   LI G  +   +  A+ L  E+   GV  +   Y  LM  +C+ G    A  LLQ +
Sbjct: 391 TCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRI 450

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
             + + P +  Y+ L+  LCK   + +A+ +   M  + +KP A  Y  +I C C   + 
Sbjct: 451 SQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRS 510

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD 406
            EA + ++EM+  G+ P+         I   ++   CK  D  +A  +  +        D
Sbjct: 511 MEAESLMEEMLQSGMLPDP-------DICRALMHVYCKERDIGKAETLLQTFAKEFQIFD 563

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           S +Y++L+  +C+  D  +   + D ++  G  P+  T+  ++  LW  + M    + LL
Sbjct: 564 SESYNTLVKTYCEDADATRLMELQDRMLKVGFAPNIQTFRQMIHGLW--KAMAVEKDKLL 621

Query: 467 LE 468
           LE
Sbjct: 622 LE 623


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 211/438 (48%), Gaps = 12/438 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFLSICRGYGRVHRPLD 103
           G+RH    +  MI  L    QF     L++ + +E    ++  +F+ + R +        
Sbjct: 150 GYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKK 209

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V D+M ++GCEP    +  +L  L +   +K A   +  MR I   P +     L+ 
Sbjct: 210 AIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMR-IRFTPTLKHFTSLLY 268

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+    M+A + +  ++   G  PD   Y  L+ G    GK+ +A +L KEM  K C 
Sbjct: 269 GWCREGKLMEAKY-VLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECE 327

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+++T+LI  LC  K +EEAMR+F EM+S G   +  TY++L+ G CK G  S+  EL
Sbjct: 328 PNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYEL 387

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI + H PN +TY  ++    K+ +L+E +E+++ M+  G  PD  +Y  +I   C 
Sbjct: 388 LDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACK 447

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
           +G+ +E     +EM   G++P   T+   I IH  + Q  C  +   A + +  M  R +
Sbjct: 448 LGEIKEGVRVWNEMEATGLSPGLDTFV--IMIHGFLSQR-CLVE---ACEFFKEMVGRGL 501

Query: 404 --SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             +    T   L+    +   +  S  +   ++  GC  +   W+  + AL+    +++A
Sbjct: 502 LSAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEA 561

Query: 462 AELLLLELMNKCVEAEVD 479
                L++M+  V  + D
Sbjct: 562 CS-YCLDMMDAGVMPQPD 578



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 185/390 (47%), Gaps = 23/390 (5%)

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+ G   + + Y  ++ IL +  Q    +     MR    Q     + V++     ++  
Sbjct: 147 KQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARM 206

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A ++  EMP  GC PD + +G L++ LC+ G + EA  LF++M  +  +PT+  +TS
Sbjct: 207 VKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRF-TPTLKHFTS 265

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+ G C+   + EA  +  ++R  G EP++  Y++L+ G    G    A +LL+ M  K 
Sbjct: 266 LLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKE 325

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN+++++TL+  LC + K++EA+ +   M+  G   DA  Y  +IS FC  GK  +  
Sbjct: 326 CEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGY 385

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
             LD M+  G  PN +T+ LHI   +       K +     ++   MR    + D   Y+
Sbjct: 386 ELLDNMIQQGHIPNPMTY-LHIMAAHEK-----KEELEECIELMEEMRKIGCTPDLNIYN 439

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL------ 465
            +I   CK G+I +  R+ +E+   G  P   T+  ++     +R + +A E        
Sbjct: 440 IVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGR 499

Query: 466 ----------LLELMNKCVEAEVDIQNQDV 485
                     L EL+N  + AE    ++DV
Sbjct: 500 GLLSAPQYGTLKELLNSLLRAEKLEMSKDV 529



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 38/316 (12%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D   ++ +++   +A +   A DLL  + +++C+     F ++ +      +  +A
Sbjct: 290 GFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEA 349

Query: 105 MRVFDKMKEFGCE-----------------------------------PTPKSYITVLAI 129
           MRVF +M+  GC                                    P P +Y+ ++A 
Sbjct: 350 MRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAA 409

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
             ++ +L+        MR+IG  P +   N++I+  CK  G +    +++ EM   G +P
Sbjct: 410 HEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACK-LGEIKEGVRVWNEMEATGLSP 468

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEEAMR 247
              T+  +I+G      + EA E FKEM  +    +P   T   L+N L +++ +E +  
Sbjct: 469 GLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKD 528

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           ++  + +KG + NV+ ++  +  L   G   +A      M+     P   T++ L+ GL 
Sbjct: 529 VWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQPDTFAKLMRGLR 588

Query: 308 KEGKLQEAVEILDRMK 323
           K    Q A EI ++++
Sbjct: 589 KLYNRQIAAEITEKVR 604



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 6/258 (2%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++Q + A+K + +A+ +F    +    G   D  T++ +IS      +     +LLD + 
Sbjct: 336 LIQALCAKKKMEEAMRVFFEMQS---CGCPADAVTYTTLISGFCKWGKISKGYELLDNMI 392

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           ++        +L I   + +     + + + ++M++ GC P    Y  V+ +  +  ++K
Sbjct: 393 QQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIK 452

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYG 195
              R +  M   G+ P + +  ++I         ++A  + F+EM  RG    P   T  
Sbjct: 453 EGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEAC-EFFKEMVGRGLLSAPQYGTLK 511

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            L+N L R  K+  +K+++  + TK C   V  +T  I+ L  +  V+EA     +M   
Sbjct: 512 ELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDA 571

Query: 256 GVEPNVFTYSSLMDGLCK 273
           GV P   T++ LM GL K
Sbjct: 572 GVMPQPDTFAKLMRGLRK 589


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 171/321 (53%), Gaps = 13/321 (4%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M E G +P V +   L+  LC   G +  A  +   M   G  P    YGT+INGLC++G
Sbjct: 1   MVETGCRPDVVTFTTLMNGLC-CEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMG 55

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
               A  L  +ME       VV Y ++I+ LC+      A  LF EM  KG+ P+V TYS
Sbjct: 56  DTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYS 115

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            ++D  C+ G  + A +LL+ MI ++  P++VT+S L+N L KEGK+ EA EI   M  +
Sbjct: 116 GMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRR 175

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G+ P    Y  +I  FC   +  +A   LD M     +P+ +T+S       T++ G CK
Sbjct: 176 GIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFS-------TLINGYCK 228

Query: 386 TD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               +   +++  M  R I  +++TY++LI  FC+ GD+  +  +++ ++  G  P+  T
Sbjct: 229 AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYIT 288

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           + +++ +L  ++++R+A  +L
Sbjct: 289 FQSMLASLCSKKELRKAFAIL 309



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 157/296 (53%), Gaps = 13/296 (4%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R L A+ + D+M E G +P    Y T++  L +    + A      M E  I+  V   N
Sbjct: 25  RVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYN 80

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I  LCK+   + A   +F EM ++G  PD  TY  +I+  CR G+  +A++L ++M  
Sbjct: 81  AIIDRLCKDGHHIHAQ-NLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIE 139

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +  +P VVT+++LIN L +   V EA  ++ +M  +G+ P   TY+S++DG CK    + 
Sbjct: 140 RQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLND 199

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  +L  M SK   P++VT+STL+NG CK  ++   +EI   M  +G+  +   Y  +I 
Sbjct: 200 AKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIH 259

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQV 394
            FC +G    A + L+ M+  G+ PN +T+        +++  LC K +  +AF +
Sbjct: 260 GFCQVGDLDAAQDLLNVMISSGVAPNYITF-------QSMLASLCSKKELRKAFAI 308



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 159/315 (50%), Gaps = 16/315 (5%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +  E  V +AL + D    E        +  +  +I+ L        A +L
Sbjct: 11  VTFTTLMNGLCCEGRVLQALALVDRMVEE-------GHQPYGTIINGLCKMGDTESALNL 63

Query: 73  LDRVN----KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           L ++     K    I   I   +C+    +H    A  +F +M + G  P   +Y  ++ 
Sbjct: 64  LSKMEETHIKAHVVIYNAIIDRLCKDGHHIH----AQNLFTEMHDKGIFPDVITYSGMID 119

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
                 +   A +  R M E  I P V + + LI AL K  G +  A +I+ +M  RG  
Sbjct: 120 SFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVK-EGKVSEAEEIYGDMLRRGIF 178

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P + TY ++I+G C+  ++ +AK +   M +K+CSP VVT+++LING C++K V+  M +
Sbjct: 179 PTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEI 238

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EM  +G+  N  TY++L+ G C+ G    A +LL +MIS    PN +T+ ++L  LC 
Sbjct: 239 FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCS 298

Query: 309 EGKLQEAVEILDRMK 323
           + +L++A  IL+ ++
Sbjct: 299 KKELRKAFAILEDLQ 313



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 160/313 (51%), Gaps = 5/313 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R D  TF+ +++ L    +   A  L+DR+ +E        + +I  G  ++     A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEG----HQPYGTIINGLCKMGDTESA 60

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +  KM+E   +     Y  ++  L ++     A   +  M + GI P V + + +I +
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+ SG    A ++ R+M  R   PD  T+  LIN L + GK+ EA+E++ +M  +   P
Sbjct: 121 FCR-SGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFP 179

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T +TY S+I+G C+   + +A R+ + M SK   P+V T+S+L++G CK       ME+ 
Sbjct: 180 TTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIF 239

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  +    N VTY+TL++G C+ G L  A ++L+ M   G+ P+   +  +++  C  
Sbjct: 240 CEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSK 299

Query: 345 GKYQEAANFLDEM 357
            + ++A   L+++
Sbjct: 300 KELRKAFAILEDL 312


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 223/451 (49%), Gaps = 42/451 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHR 100
           A G +    T+++MI  L        A  L  ++  ++   T DI  + S+  G+G++  
Sbjct: 49  AAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQM--KEAGFTPDIVTYNSLIDGHGKLGL 106

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             + + +F++MK+  C+P   +Y  ++    +  ++  AF F   M+  G++P V + + 
Sbjct: 107 LDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYST 166

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
            I A CK  G +  A K F +M     TP+ +TY +LI+  C+ G + EA +L +E+   
Sbjct: 167 FIDAFCK-EGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA 225

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                VVTYT+L++GLC+   ++EA  +F  M + GV PN  TY++L+ G  K      A
Sbjct: 226 GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYA 285

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ++L+ M  K  +P+++ Y T+L GLC E +L+EA  ++  +K  G+  +A +Y  ++  
Sbjct: 286 KDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDA 345

Query: 341 FCDIGKYQEAANFL-----------------------DEMVLGGITPNRLTWSLHIRIHN 377
           +   G+  EA   L                       DEM+  G+ P+++ ++       
Sbjct: 346 YFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYT------- 398

Query: 378 TVVQGLCKTDPNRAFQVYLSMRNRSISV----DSLTYSSLITCFCKKGDIHKSARIVDEL 433
            ++ G  K   +   Q  L++R+R I +    D   Y++LI      G + K+  ++DE+
Sbjct: 399 ALIDGNMK---HGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEM 455

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +  G LPDE  +  ++   +   K+ +A EL
Sbjct: 456 IGKGVLPDEVVYMCLIKKYYALGKVDEALEL 486



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 198/381 (51%), Gaps = 16/381 (4%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A   F KM++F   P P+S   +L  L +  +  L+ +F++ M   GI+  V + N++I
Sbjct: 4   EASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMI 63

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G ++ A  +F +M   G TPD  TY +LI+G  +LG + E   +F++M+   C
Sbjct: 64  DYLCK-EGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADC 122

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V+TY +LIN  C+ + + +A     EM++ G++PNV TYS+ +D  CK G   +A++
Sbjct: 123 DPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIK 182

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
               M      PN  TY++L++  CK G L EA+++++ +   G+K +   Y  ++   C
Sbjct: 183 FFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLC 242

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
           + G+ +EA      M+  G+ PN+ T++        +V G  K  +   A  +   M+ +
Sbjct: 243 EEGRMKEAEEVFRAMLNAGVAPNQETYT-------ALVHGFIKAKEMEYAKDILKEMKEK 295

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I  D L Y +++   C +  + ++  ++ E+   G   +   ++ +M A +   +  +A
Sbjct: 296 CIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEA 355

Query: 462 AELL--LLELM-----NKCVE 475
             LL  +L+L+     N C E
Sbjct: 356 LTLLEEMLDLVDGLCKNNCFE 376



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 24/343 (6%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ANG + +  T+S  I         + A      + +      E  + S+     +     
Sbjct: 154 ANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLA 213

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+++ +++ + G +    +Y  +L  L EE ++K A   +R M   G+ P   +   L+
Sbjct: 214 EALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALV 273

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K +  M+ A  I +EM  +   PD   YGT++ GLC   ++ EAK L  E++    
Sbjct: 274 HGFIK-AKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGI 332

Query: 223 SPTVVTYTSL-----------------------INGLCQSKSVEEAMRLFEEMRSKGVEP 259
           +   V YT+L                       ++GLC++   E A +LF+EM  KG+ P
Sbjct: 333 NTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMP 392

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +   Y++L+DG  K G   +A+ L   MI      ++  Y+ L+ GL   G++Q+A  +L
Sbjct: 393 DKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLL 452

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           D M  +G+ PD  +Y  +I  +  +GK  EA    +EM   G+
Sbjct: 453 DEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 495


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 193/367 (52%), Gaps = 13/367 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPLDAMRVFD 109
           T++ +I+   +  + +   +++ R  +E+  I  D   + ++  G+ +V +  DA +VFD
Sbjct: 149 TYNTVIAGFCARGRVQAGIEIM-REMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFD 207

Query: 110 KM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           +M  E   EP    Y  ++    ++  L++A R+   M + G+   VA+ N+ +  L   
Sbjct: 208 EMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFME 267

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G    A  +  EM  +G  PD++TY  LING C+ GK  +A ++F+ M  K    TVVT
Sbjct: 268 -GRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVT 326

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YTSLI+ L     V+E  RLF +   +G+ P++F Y++L++  C GG   +A E++  M 
Sbjct: 327 YTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEME 386

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            KR  P+ VTY+TL+ GLC  G+L EA  +++ M  +G++PD   Y  +IS +   G  +
Sbjct: 387 KKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIK 446

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDS 407
           +A    DEM+  G  P  LT+       N +++GLC       A  +   M    I+ D 
Sbjct: 447 DAVKVRDEMMGKGFNPTLLTY-------NAMIKGLCLNGQGGDAEDLVKEMVGNGITPDD 499

Query: 408 LTYSSLI 414
            TY SLI
Sbjct: 500 STYISLI 506



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 172/341 (50%), Gaps = 50/341 (14%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEA 210
            P   + N +I   C   G + A  +I REM  RG   PD YTY T+I+G C++GK+ +A
Sbjct: 144 SPNAVTYNTVIAGFCAR-GRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDA 202

Query: 211 KELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMR---------------------- 247
            ++F EM T+    P  V Y +LI G C   ++E A+R                      
Sbjct: 203 TKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVH 262

Query: 248 -------------LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
                        L EEM  KG+ P+ FTY+ L++G CK G   +AM++ ++M+ K  R 
Sbjct: 263 TLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRA 322

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
            +VTY++L++ L  +G +QE   + +    +G++PD  +Y  +I+  C  G    A   +
Sbjct: 323 TVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIM 382

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLC---KTDPNRAFQVYLSMRNRSISVDSLTYS 411
            EM    ITP+ +T+       NT+++GLC   + D  R   +   M  R I  D ++Y+
Sbjct: 383 GEMEKKRITPDDVTY-------NTLMRGLCLLGRLDEARG--LIEEMTKRGIQPDLVSYN 433

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +LI+ +  KGDI  + ++ DE++  G  P   T++A++  L
Sbjct: 434 TLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGL 474



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 196/406 (48%), Gaps = 15/406 (3%)

Query: 50  NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109
            +TF++M+  L +A +   A +LL ++          +    C   GRV   ++ MR   
Sbjct: 116 TTTFNIMLRHLCTAGKPVRALELLRQMPSPNAVTYNTVIAGFC-ARGRVQAGIEIMR--- 171

Query: 110 KMKE-FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIKALCK 167
           +M+E  G  P   +Y TV++   +  +++ A + +  M   G ++P     N LI   C 
Sbjct: 172 EMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYC- 230

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           + G ++ A +   EM +RG +    TY   ++ L   G+  EA  L +EM  K  +P   
Sbjct: 231 DQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAF 290

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY  LING C+    ++AM++FE M  KG+   V TY+SL+  L   G   +   L    
Sbjct: 291 TYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDA 350

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           + +  RP++  Y+ L+N  C  G +  A EI+  M+ + + PD   Y  ++   C +G+ 
Sbjct: 351 VRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRL 410

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVD 406
            EA   ++EM   GI P+ +++       NT++ G   K D   A +V   M  +  +  
Sbjct: 411 DEARGLIEEMTKRGIQPDLVSY-------NTLISGYSMKGDIKDAVKVRDEMMGKGFNPT 463

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            LTY+++I   C  G    +  +V E+V +G  PD+ T+ +++  L
Sbjct: 464 LLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGL 509



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 164/316 (51%), Gaps = 13/316 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           AF  +  +  + +     + N++++ LC  +G    A ++ R+MP    +P++ TY T+I
Sbjct: 100 AFVLFADIFRLRLPLSTTTFNIMLRHLC-TAGKPVRALELLRQMP----SPNAVTYNTVI 154

Query: 199 NGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG- 256
            G C  G++    E+ +EM E    +P   TY ++I+G C+   VE+A ++F+EM ++G 
Sbjct: 155 AGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGK 214

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           VEPN   Y++L+ G C  G    A+     M+ +     + TY+  ++ L  EG+  EA 
Sbjct: 215 VEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAH 274

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            +++ M  +GL PDA  Y  +I+ +C  GK ++A    + MV  GI    +T++    IH
Sbjct: 275 ALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYT--SLIH 332

Query: 377 NTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
              ++G+ + + +R F        R I  D   Y++LI   C  GD+ ++  I+ E+   
Sbjct: 333 ALSMKGMVQ-ETDRLFN---DAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKK 388

Query: 437 GCLPDEGTWSAVMTAL 452
              PD+ T++ +M  L
Sbjct: 389 RITPDDVTYNTLMRGL 404



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 135/259 (52%), Gaps = 1/259 (0%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           +T++L +  L    +   A  L++ + ++        +  +  GY +  +   AM++F+ 
Sbjct: 255 ATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEV 314

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M   G   T  +Y +++  L  +  ++   R +      GI+P +   N LI + C   G
Sbjct: 315 MVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHC-TGG 373

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            MD AF+I  EM  +  TPD  TY TL+ GLC LG++ EA+ L +EM  +   P +V+Y 
Sbjct: 374 DMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYN 433

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LI+G      +++A+++ +EM  KG  P + TY++++ GLC  G    A +L++ M+  
Sbjct: 434 TLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGN 493

Query: 291 RHRPNIVTYSTLLNGLCKE 309
              P+  TY +L+ GL  E
Sbjct: 494 GITPDDSTYISLIEGLTTE 512



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 128/252 (50%), Gaps = 15/252 (5%)

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           T+ ++ L  S     A  LF ++    +  +  T++ ++  LC  G   +A+ELL+ M S
Sbjct: 85  TASLHPLLSSLPPAPAFVLFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMPS 144

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-GLKPDAGLYGKIISCFCDIGKYQ 348
               PN VTY+T++ G C  G++Q  +EI+  M+ + G+ PD   Y  +IS +C +GK +
Sbjct: 145 ----PNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVE 200

Query: 349 EAANFLDEMVL-GGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVD 406
           +A    DEM+  G + PN +       ++N ++ G C + +   A +    M +R +S+ 
Sbjct: 201 DATKVFDEMLTEGKVEPNAV-------MYNALIGGYCDQGNLEVALRYRGEMVDRGVSMT 253

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
             TY+  +     +G   ++  +V+E+   G  PD  T++ ++       K ++A ++  
Sbjct: 254 VATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFE 313

Query: 467 LELMNKCVEAEV 478
           + ++ K + A V
Sbjct: 314 V-MVGKGIRATV 324



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 4/192 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           +T +T   ++  +  +  V +   +F+ A      G R D   ++ +I+   +      A
Sbjct: 322 ATVVTYTSLIHALSMKGMVQETDRLFNDAVRR---GIRPDLFMYNALINSHCTGGDMDRA 378

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
            +++  + K++    +  + ++ RG   + R  +A  + ++M + G +P   SY T+++ 
Sbjct: 379 FEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISG 438

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
              +  +K A +    M   G  P + + N +IK LC N    DA   + +EM   G TP
Sbjct: 439 YSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAE-DLVKEMVGNGITP 497

Query: 190 DSYTYGTLINGL 201
           D  TY +LI GL
Sbjct: 498 DDSTYISLIEGL 509


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 175/330 (53%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           L K+G L++A +++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 292 LXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  D  TY+ +I  FCKKG
Sbjct: 352 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPDDRTYTMIINEFCKKG 401

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG +P   T++ +M  
Sbjct: 402 DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 155/268 (57%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M ++   
Sbjct: 221 GLCKES-KMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLL 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GL +   +++A  L +EM  KG++P+ FTY +L+DG CK G    A E 
Sbjct: 280 PDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKPD   Y  II+ FC 
Sbjct: 340 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 427



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 202/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMLLEAKSLIQVVVSRK-------------GKG------SAS 55

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I VL+ L+    E   L+ A   YR  RE    +    C   
Sbjct: 56  AVFATILE--TKGTQRSDIYVLSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKV 113

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E+   G     Y +  L++  C+ G I  A+ +F  +
Sbjct: 114 LEHLMKL-----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   + E  RL   M + GV+P+V+TYS L++GLCK    
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 229 DDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTL 288

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I      G  ++A + +DEM + G+ P++ T+        T++ G CK  D + AF+   
Sbjct: 289 IYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYX-------TLIDGCCKEGDLDTAFEHRK 341

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD+ T++ ++     + 
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKG 401

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 402 DVWKGSKLL 410



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TLI GL + G + +A +L  EM  K   P   TY +L
Sbjct: 264 DLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 384 KPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 1/203 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M   G  P   ++ T++    +  ++ LA   Y+ M    + P + + N LI
Sbjct: 230 DANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLI 289

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             L K  G +  A  +  EM  +G  PD +TY TLI+G C+ G +  A E  K M  +  
Sbjct: 290 YGLXKK-GDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V YT+LI+GLCQ     +A ++  EM S G++P+  TY+ +++  CK G   +  +
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSK 408

Query: 283 LLQMMISKRHRPNIVTYSTLLNG 305
           LL+ M    H P++VTY+ L+NG
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 219/444 (49%), Gaps = 22/444 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC----DITEDIFLSICRGYGRVH 99
           +G   D   +  +I  LV+      A  LLD +    C    +   D+ L +C G G V 
Sbjct: 209 HGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLC-GLGHVR 267

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
              +A R+ D+M   GC P+  +Y  +L  L    Q   A+     + E+     V  LN
Sbjct: 268 ---EAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVN----VVMLN 320

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            +I+  C   G +  A +++  M ++GC PD +TY  L++GLC+LG+   A  +  EME 
Sbjct: 321 TVIRG-CLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEE 379

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K C+P +VTY++L++  C++   ++A  + ++M +KG   N   Y+ ++  L K G   +
Sbjct: 380 KGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDE 439

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           AM L+Q M S+  +P+I TY+T++  LC   ++ EA  I   +  +G+  +   Y  +I 
Sbjct: 440 AMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIH 499

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSM 398
                G++QE     +EMVL G         L +  +N +++ LCK  + +R+  +   M
Sbjct: 500 ALLHSGRWQEGLRLANEMVLHGC-------PLDVVSYNGLIKALCKEGNVDRSMMLLEEM 552

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             + I  ++ +Y+ LI   CK G +  +  +  E++  G  PD  T++ ++  L  +   
Sbjct: 553 MTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLC-KVGW 611

Query: 459 RQAAELLLLELMNKCVEAEVDIQN 482
             AA  LL +L N+ V  ++   N
Sbjct: 612 THAALNLLEKLPNENVHPDIVTYN 635



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 173/332 (52%), Gaps = 1/332 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  T+++++  L    +   A  +LD + ++ C      + ++   + R     
Sbjct: 344 SKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWD 403

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  + D+M   G     + Y  ++  L ++ +L  A R  + M+  G +P + + N +I
Sbjct: 404 DARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTII 463

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC N   MD A  IF  +   G   +  TY TLI+ L   G+  E   L  EM    C
Sbjct: 464 YHLCNND-QMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGC 522

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              VV+Y  LI  LC+  +V+ +M L EEM +KG++PN F+Y+ L++ LCK G    A+E
Sbjct: 523 PLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALE 582

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M+++   P+IVTY+TL+NGLCK G    A+ +L+++  + + PD   Y  +IS  C
Sbjct: 583 LSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHC 642

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
            +    +A+  LD+ V GGI PN  TW + ++
Sbjct: 643 KVRLLDDASMLLDKAVSGGIVPNERTWGMMVQ 674



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/490 (27%), Positives = 225/490 (45%), Gaps = 53/490 (10%)

Query: 30  KALVIFDSATAEYA--NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +AL + D     +A    FR    +++ ++S L  A+    A  L  R+ +++   T   
Sbjct: 127 RALHLLDQMPRRFAVTPSFR----SYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFT 182

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F    R   R+ R  DA+ +   M   GC P    Y TV+  LV +  +  A      M 
Sbjct: 183 FGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEML 242

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL--- 204
            +G    V + N ++  LC   G +  A ++   M   GCTP   TYG L+ GLCR    
Sbjct: 243 LMGCAADVNTFNDVVLGLC-GLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQA 301

Query: 205 ----------------------------GKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
                                       GK+  A EL++ M +K C P V TY  L++GL
Sbjct: 302 DEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGL 361

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+      A+R+ +EM  KG  PN+ TYS+L+   C+ G    A  +L  M +K    N 
Sbjct: 362 CKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNS 421

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
             Y+ ++  L K+GKL EA+ ++  MK QG KPD   Y  II   C+  +  EA +    
Sbjct: 422 QGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGN 481

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI----SVDSLTYSS 412
           ++  G+  N +T+       NT++  L  +     +Q  L + N  +     +D ++Y+ 
Sbjct: 482 LLEEGVVANGITY-------NTLIHALLHSG---RWQEGLRLANEMVLHGCPLDVVSYNG 531

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           LI   CK+G++ +S  +++E++  G  P+  +++ ++  L    K+R A E L  E++N+
Sbjct: 532 LIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALE-LSKEMLNQ 590

Query: 473 CVEAEVDIQN 482
            +  ++   N
Sbjct: 591 GLTPDIVTYN 600



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 154/290 (53%), Gaps = 1/290 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S ++        +  A  +LD+++ +   +    +  I    G+  +  +AMR+  +M
Sbjct: 388 TYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEM 447

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K  GC+P   +Y T++  L   +Q+  A   + ++ E G+     + N LI AL  +SG 
Sbjct: 448 KSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALL-HSGR 506

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
                ++  EM   GC  D  +Y  LI  LC+ G +  +  L +EM TK   P   +Y  
Sbjct: 507 WQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNM 566

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN LC++  V +A+ L +EM ++G+ P++ TY++L++GLCK G +  A+ LL+ + ++ 
Sbjct: 567 LINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNEN 626

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
             P+IVTY+ L++  CK   L +A  +LD+    G+ P+   +G ++  F
Sbjct: 627 VHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQNF 676


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 180/351 (51%), Gaps = 8/351 (2%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C PT  +Y T++  L +   ++ A      M E G+ P V + N ++  LCK    +DA 
Sbjct: 469 CRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDA- 527

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             +F+    RGC P+  TY TLI+GL ++ K+ EA +L  +M    C    VTY+++++G
Sbjct: 528 HNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDG 587

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           L +   +E+A+ +  +MR  G  P+  TY++L+DG  K     +A+ LL+ M+     P+
Sbjct: 588 LLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPS 647

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +VTY+TL +GLC+ G+  EAVEILD M  +G  P+A  Y  I+   C  G+  EA  + +
Sbjct: 648 VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFE 707

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLI 414
           +M    +       + H+  ++ ++ GLCK    + A++    M       D +T+S LI
Sbjct: 708 KMARDEVV------APHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILI 761

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              C  G I     +   +   GC  D   ++A++ A   + +   A  LL
Sbjct: 762 NGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALL 812



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 132/536 (24%), Positives = 239/536 (44%), Gaps = 85/536 (15%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T + V+  +  + +V+K   + +        G   +  T++ +++ L+   + + A 
Sbjct: 35  TVVTYSTVIDGLCRDNEVDKGCKLLEEMAGR---GCAPNAVTYNTLVNALLGQGRAKEAF 91

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL+R+    C      F  I +G  +      A RV D+M + G  P  + +  +L  L
Sbjct: 92  SLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHAL 151

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK----------------------- 167
            E  ++  A+ F++ +  IG  P   + N ++  L K                       
Sbjct: 152 CELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTV 211

Query: 168 -----------NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
                       +G +  A++ F  MP  G +P++ TY  LI+GLC+ GK+  A  L ++
Sbjct: 212 FTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRD 271

Query: 217 METKA-----------------------------CSPTVVTYTSLINGLCQSKSVEEAMR 247
             ++A                             C P VV + SL+NGLCQ++ V+EA  
Sbjct: 272 KNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFE 331

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM-ISKRHRPNIVTYSTLLNGL 306
           LF+ M+  G   +V TY+ L+ GLCK     +A   +++M  ++   PN+VT+STL+ GL
Sbjct: 332 LFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGL 391

Query: 307 CKEGKLQEAVEILDRM-KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           C  G++ +A E+ +RM  ++G+ P+   Y  ++   C  G  +      ++M L     +
Sbjct: 392 CNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQM-LEREWRS 450

Query: 366 RLTWSLH---------------IRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLT 409
             +W +H               +  +NT+V GL K+   R A  +   M    +S D +T
Sbjct: 451 SSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVIT 510

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++S++   CK+  I  +  +    +  GC P+  T+S ++  L    KM +A +LL
Sbjct: 511 FNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLL 566



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 230/520 (44%), Gaps = 102/520 (19%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRP 101
           GFR    T+S +I  L   N+      LL+ +    C    +T +  ++   G GR    
Sbjct: 31  GFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAK-- 88

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A  + ++M   GC P   ++  ++  L +E +++ AFR    M + G  P V    VL
Sbjct: 89  -EAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVL 147

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           + ALC+  G +D A+  F+++   G TPD+ TY T+++GL + G++  A  + + +    
Sbjct: 148 LHALCE-LGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESF 206

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            SPTV T+T  ++GL ++ ++  A   F+ M   GV PN  TY +L+DGLCK G    A+
Sbjct: 207 SSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIAL 266

Query: 282 ELLQ---------------MMISKRHR--------------PNIVTYSTLLNGLCKEGKL 312
            LL+                 + + HR              PN+V +++L+NGLC+  ++
Sbjct: 267 GLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRV 326

Query: 313 QEAVEILDRMK------------------------------------LQGLKPDAGLYGK 336
            EA E+ D MK                                     +G  P+   +  
Sbjct: 327 DEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFST 386

Query: 337 IISCFCDIGKYQEAANFLDEMV-LGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQV 394
           +I   C+ G+  +A    + MV + GI+PNR T++        +++GLCK  D  R  Q 
Sbjct: 387 LIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAF-------LLEGLCKAGDSRRLEQC 439

Query: 395 YLSMRNR-----------SISVDSL----------TYSSLITCFCKKGDIHKSARIVDEL 433
           +  M  R           S  VD L          TY++L+T   K G +  +  +++ +
Sbjct: 440 FEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFM 499

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           +  G  PD  T+++V+  L   +++  A  +    L   C
Sbjct: 500 IESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGC 539



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 186/395 (47%), Gaps = 25/395 (6%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G  +  R  DA   F K  +FG  PT  +Y TV+  L  +N++    +    M   G  P
Sbjct: 10  GLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAP 69

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
              + N L+ AL    G    AF +   M   GC P+  T+G +I GLC+ G+I  A  +
Sbjct: 70  NAVTYNTLVNALL-GQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRV 128

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
             EM  +   P V  +T L++ LC+   V+EA   F+++   G  P+  TY++++DGL K
Sbjct: 129 VDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYK 188

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G    A  +LQ++      P + T++  ++GL K G L  A E  D M   G+ P+   
Sbjct: 189 AGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVT 248

Query: 334 YGKIISCFCDIGKYQEAANFLDE------------MVLGGITPNRLTWSL---------- 371
           Y  +I   C  GK   A   L +            ++ G    +RL  ++          
Sbjct: 249 YDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVP 308

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
           ++   N+++ GLC+    + AF+++  M+    S D +TY+ L+   CK   I ++ R V
Sbjct: 309 NVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHV 368

Query: 431 DEL-VLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           + +   +GC P+  T+S ++  L +  ++ QA E+
Sbjct: 369 ELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEV 403



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 198/451 (43%), Gaps = 44/451 (9%)

Query: 49   DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
            D  T++ +I       + R A  LL  + +     +   + ++C G  R  R  +A+ + 
Sbjct: 612  DAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEIL 671

Query: 109  DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCK 167
            D M   GC P   +Y +++  L +  ++  A  ++  M R+  + P V + + LI  LCK
Sbjct: 672  DYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCK 731

Query: 168  NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             +G +D A++    M   G  PD  T+  LINGLC  G+I    ELF  M  + C   + 
Sbjct: 732  -AGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIY 790

Query: 228  TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG------------ 275
             Y ++IN  C       A  L EEM++ G+  N  T+  ++  LC               
Sbjct: 791  AYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSI 850

Query: 276  ---C------------------SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
               C                  S QA+ELL+ M++    P+   Y T+++GL K G  + 
Sbjct: 851  PEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEV 910

Query: 315  AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
            A ++L  M+ +G  PD   Y  +IS      +   A ++ +EM+   + P+ + +S    
Sbjct: 911  AAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYS---- 966

Query: 375  IHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
               +++   CK D  +    +  +R+  I      YS+++   CK     K+  ++ E+ 
Sbjct: 967  ---SLIDAFCKAD--KVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMK 1021

Query: 435  LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
               C P    W+++ TA     ++ +A +L+
Sbjct: 1022 SKNCEPGIHIWTSLATAYVAEGRVDEAVKLV 1052



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 136/538 (25%), Positives = 225/538 (41%), Gaps = 85/538 (15%)

Query: 13   ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
            IT   VL  +  E+ +  A  +F  A      G R +  T+S +I  L    +   A  L
Sbjct: 509  ITFNSVLDGLCKEQRILDAHNVFKRA---LERGCRPNVVTYSTLIDGLSKMAKMDEALQL 565

Query: 73   LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
            L ++ +  C      + ++  G  +V R  DA+ V  +M++ GC P   +Y T++    +
Sbjct: 566  LAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFK 625

Query: 133  ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              +L+ A    R M E G  P V +   L   LC+ SG  D A +I   M  RGC P++ 
Sbjct: 626  RQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR-SGRFDEAVEILDYMAARGCAPNAI 684

Query: 193  TYGT------------------------------------LINGLCRLGKIYEAKELFKE 216
            TY +                                    LI+GLC+ G+I EA E  + 
Sbjct: 685  TYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLER 744

Query: 217  METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
            M      P VVT++ LINGLC +  ++  + LF  M  +G + +++ Y+++++  C  G 
Sbjct: 745  MIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGE 804

Query: 277  SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV-------------------- 316
             S A  LL+ M +     N VT+  ++  LC   ++ EAV                    
Sbjct: 805  FSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLI 864

Query: 317  -------------EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
                         E+L  M   G  PDA  Y  ++      G  + AA  L EM   G +
Sbjct: 865  TSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHS 924

Query: 364  PNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
            P+       +R +  ++ GL K      A   +  M  +++  D++ YSSLI  FCK   
Sbjct: 925  PD-------LRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADK 977

Query: 423  IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480
            +  + +++      G  P    +S ++ +L   R   +A E ++ E+ +K  E  + I
Sbjct: 978  VDDAWKLLRS---SGIEPTITMYSTMVDSLCKNRGTDKALE-VIREMKSKNCEPGIHI 1031



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 149/274 (54%), Gaps = 8/274 (2%)

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY  LINGLC+ G++ +A   F++       PTVVTY+++I+GLC+   V++  +L EEM
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G  PN  TY++L++ L   G + +A  LL+ M +    P ++T+  ++ GLCKEG++
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           + A  ++D M  +G  PD  ++  ++   C++G+  EA  F  +++L G TP+ +T+   
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTY--- 179

Query: 373 IRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL-TYSSLITCFCKKGDIHKSARIVD 431
               NT+V GL K     A  + L +   S S  ++ T++  +    K G++  +    D
Sbjct: 180 ----NTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFD 235

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +   G  P+  T+ A++  L    K+  A  LL
Sbjct: 236 SMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLL 269



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 158/341 (46%), Gaps = 38/341 (11%)

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + + NVLI  LCK +G +  AF  FR+    G  P   TY T+I+GLCR  ++ +  +L 
Sbjct: 1   MVTYNVLINGLCK-AGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLL 59

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           +EM  + C+P  VTY +L+N L      +EA  L E M + G  P + T+  ++ GLCK 
Sbjct: 60  EEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKE 119

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G    A  ++  M+ +   P++  ++ LL+ LC+ G++ EA     ++ L G  PDA  Y
Sbjct: 120 GEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTY 179

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393
             ++      G+ + A   L  +     +P   T+++        V GL K  +   A++
Sbjct: 180 NTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTI-------AVDGLSKAGNLTGAYE 232

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDI-----------------------------H 424
            + SM    +S +++TY +LI   CK G +                             H
Sbjct: 233 FFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAH 292

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +    +  L    C+P+   ++++M  L   R++ +A EL 
Sbjct: 293 RLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELF 333



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 153/339 (45%), Gaps = 37/339 (10%)

Query: 52   TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI-CRGYGRVHRPLDAMRVFDK 110
             +S +I  L  A +   A + L+R+ +    I + +  SI   G     R    + +F  
Sbjct: 721  AYSALIDGLCKAGRIDEAYEFLERMIRAG-RIPDVVTFSILINGLCDAGRIDTGLELFCG 779

Query: 111  MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
            M E GC+    +Y  ++     + +   A+     M+  GI     +  ++IKALC N  
Sbjct: 780  MAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDR 839

Query: 171  TMDA--------------------------------AFKIFREMPNRGCTPDSYTYGTLI 198
              +A                                A ++ R M   G +PD+  Y T++
Sbjct: 840  IDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVM 899

Query: 199  NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
            +GL + G    A +L +EM ++  SP + TYT +I+GL ++K +  A   FEEM  K ++
Sbjct: 900  DGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLK 959

Query: 259  PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
            P+   YSSL+D  CK      A +LL+   S    P I  YST+++ LCK     +A+E+
Sbjct: 960  PDAIVYSSLIDAFCKADKVDDAWKLLR---SSGIEPTITMYSTMVDSLCKNRGTDKALEV 1016

Query: 319  LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            +  MK +  +P   ++  + + +   G+  EA   ++++
Sbjct: 1017 IREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDL 1055



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 146/282 (51%), Gaps = 12/282 (4%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE---KCDITEDIFLSICRGYGRVHRP 101
            G + D   ++ MI+      +F  A  LL+ +      K  +T  I +    G  R+   
Sbjct: 784  GCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRID-- 841

Query: 102  LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             +A+  F  + E  C     SY T++  LV   + + A    R M   G  P   +   +
Sbjct: 842  -EAVSYFHSIPE-DCR-DEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTV 898

Query: 162  IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
            +  L K +G+ + A K+ +EM +RG +PD  TY  +I+GL +  ++  A + F+EM  K 
Sbjct: 899  MDGLFK-AGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKN 957

Query: 222  CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
              P  + Y+SLI+  C++  V++A +L   +RS G+EP +  YS+++D LCK   + +A+
Sbjct: 958  LKPDAIVYSSLIDAFCKADKVDDAWKL---LRSSGIEPTITMYSTMVDSLCKNRGTDKAL 1014

Query: 282  ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            E+++ M SK   P I  +++L      EG++ EAV++++ ++
Sbjct: 1015 EVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 376 HNTVVQGLCKT----DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           +N ++ GLCK     D   AF+  +    R   V   TYS++I   C+  ++ K  ++++
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVV---TYSTVIDGLCRDNEVDKGCKLLE 60

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           E+   GC P+  T++ ++ AL  + + ++A  LL     N C
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGC 102


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 192/379 (50%), Gaps = 43/379 (11%)

Query: 118 PTPK--SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           PTP    +  +LA LV+ N    A   +R +   GI+P + +L +L+   C ++G +   
Sbjct: 6   PTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYC-HTGGITFL 64

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA-----------------------KE 212
           F I  ++   G  P+S T+ TLI G+C  G+ YEA                         
Sbjct: 65  FSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNG 124

Query: 213 LFKEMETKAC---------SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
           L K  ET+A          +  VV Y+++I+ LC+ K V +A RL+ EM +KG+ PNV+T
Sbjct: 125 LCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYT 184

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +S L+D LCK     QAM LL MM+ K  +PN+VTY  +++G C   ++ +A+ I + M 
Sbjct: 185 FSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMV 244

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            +G++P+   Y  II+  C   +  EA N   EM    I P+ +T+       N ++ GL
Sbjct: 245 QEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTY-------NILIDGL 297

Query: 384 CKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK    + + ++   MR+   +VD +TY+SL+   CK   + ++  +V E+   G  P+ 
Sbjct: 298 CKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNV 357

Query: 443 GTWSAVMTALWDRRKMRQA 461
            T++ ++  L    ++  A
Sbjct: 358 CTYTTLIDGLCKDGRLEDA 376



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 208/423 (49%), Gaps = 12/423 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG +    T +++++             +L ++ K   +     F ++ +G     +  +
Sbjct: 39  NGIKPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYE 98

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+   D +   G +    SY  ++  L +  + + A +    +R+  +   V   + +I 
Sbjct: 99  ALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQM---LRKTWVNADVVMYSTIID 155

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK     DA ++++ EM  +G  P+ YT+  L++ LC+  K  +A  L   M  K   
Sbjct: 156 SLCKGKFVTDA-YRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVK 214

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY ++++G C    V +A+ +F  M  +GVEPNV+ Y+ +++GLCK     +AM L
Sbjct: 215 PNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNL 274

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M  K+  P++VTY+ L++GLCK GK+  ++E++D M+  G   D   Y  ++   C 
Sbjct: 275 FKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCK 334

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
                +A   + E+   GI PN  T++       T++ GLCK      A+ ++  +    
Sbjct: 335 NHHLDQAITLVKEIKDQGIQPNVCTYT-------TLIDGLCKDGRLEDAYVIFQEILTEG 387

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
             +   TY+ +I   CKKG   ++  ++  +  + C+PD  ++  ++ AL ++ +  +  
Sbjct: 388 YHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTN 447

Query: 463 ELL 465
           +LL
Sbjct: 448 KLL 450



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 188/367 (51%), Gaps = 38/367 (10%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR--VNKEKCDITEDI 87
           +AL+  D   A   +GF+ D  +++++++ L    + R A  +L +  VN +   +   I
Sbjct: 98  EALLFHDHVVA---HGFKLDQVSYAILMNGLCKMGETRAAMQMLRKTWVNADVV-MYSTI 153

Query: 88  FLSICRG-----YGRVHRPLDAMRVFDKMKEF--------------------------GC 116
             S+C+G       R++  + A  +F  +  F                          G 
Sbjct: 154 IDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGV 213

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
           +P   +Y  ++      NQ+  A   +  M + G++P V   N++I  LCK    +D A 
Sbjct: 214 KPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKK-RVDEAM 272

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
            +F+EM  +   PD  TY  LI+GLC+LGKI  + EL  EM +   +  ++TY SL++ L
Sbjct: 273 NLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHAL 332

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C++  +++A+ L +E++ +G++PNV TY++L+DGLCK G    A  + Q ++++ +   +
Sbjct: 333 CKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITV 392

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
            TY+ ++NGLCK+G   EA+ +L RM+     PDA  Y  II    + G+  +    L  
Sbjct: 393 WTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCA 452

Query: 357 MVLGGIT 363
           M++ G++
Sbjct: 453 MIVRGLS 459



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 140/280 (50%), Gaps = 13/280 (4%)

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           TP    +  ++  L ++     A  LF+++E     P++VT T L+N  C +  +     
Sbjct: 7   TPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFS 66

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +  ++   G EPN  T+++L+ G+C  G + +A+     +++   + + V+Y+ L+NGLC
Sbjct: 67  ILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLC 126

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY-QEAANFLDEMVLGGITPNR 366
           K G+ + A+++L +  +     D  +Y  II   C  GK+  +A     EM+  GI PN 
Sbjct: 127 KMGETRAAMQMLRKTWVNA---DVVMYSTIIDSLCK-GKFVTDAYRLYSEMIAKGIFPNV 182

Query: 367 LTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
            T+S+       +V  LCK    + A  +   M  + +  + +TY +++  +C    ++K
Sbjct: 183 YTFSI-------LVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNK 235

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  I + +V +G  P+   ++ ++  L  ++++ +A  L 
Sbjct: 236 ALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLF 275



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 107/220 (48%), Gaps = 10/220 (4%)

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P +  ++ ++  L K      A+ L + +     +P+IVT + L+N  C  G +     I
Sbjct: 8   PPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSI 67

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L ++   G +P++  +  +I   C  G+  EA  F D +V  G   +++++++       
Sbjct: 68  LTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAI------- 120

Query: 379 VVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           ++ GLCK    RA    L  R   ++ D + YS++I   CK   +  + R+  E++  G 
Sbjct: 121 LMNGLCKMGETRAAMQML--RKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGI 178

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            P+  T+S ++ AL   RK +QA  LL + +M K V+  V
Sbjct: 179 FPNVYTFSILVDALCKDRKGKQAMNLLAM-MMKKGVKPNV 217


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 192/357 (53%), Gaps = 10/357 (2%)

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           ++Y T++        +  A +    +   G+ P   +    +   C+ +G +  A ++F 
Sbjct: 73  RTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCR-AGMLTHACRVFV 131

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
            MP RGC   ++TY  L++GL   G + EA  +F  M   +C+P    Y ++++GLC++ 
Sbjct: 132 LMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAG 191

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
             EEA  L EE  S G EPN+  Y++L+DG C  G    A+++ + M   R  PN+ TY+
Sbjct: 192 RTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYT 251

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            L++GLCK GK++ A+ +  RM   GL+P+   Y  +I   C+ G  Q A   L  M   
Sbjct: 252 ELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETN 311

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCK 419
           G+ PN  T+S+       ++  LCK +     Q++L S+  + + V+ + Y+SLI   CK
Sbjct: 312 GLVPNDWTFSV-------LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCK 364

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476
            G I  +  ++ +++ +G +PD  ++S+++  L  ++K+ QA  L+L ++M K ++A
Sbjct: 365 TGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQAT-LMLEDMMEKGIQA 420



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 183/359 (50%), Gaps = 7/359 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM VF  M+   C P    Y T++  L E  + + A          G +P +   N LI
Sbjct: 160 EAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALI 219

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C N+G M+ A K+F  M    C+P+  TY  LI+GLC+ GK+  A  LF  M     
Sbjct: 220 DGYC-NAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGL 278

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTYT+LI G C    ++ A RL   M + G+ PN +T+S L+D LCK     +A  
Sbjct: 279 EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQL 338

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L  ++ K  + N V Y++L++GLCK GK+  A E++ +M  +G  PDA  Y  +I   C
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC 398

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
              K  +A   L++M+  GI  + +T+++   I + +V+ +    P + F     M    
Sbjct: 399 RQKKLSQATLMLEDMMEKGIQASPVTYTI---IIDELVREVGSEGPKKIFD---KMIATG 452

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           I+ D +TY+  +  +C++G +  +  ++ ++V  G  P+  T++ ++    +   + QA
Sbjct: 453 INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQA 511



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 211/431 (48%), Gaps = 16/431 (3%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T  T   +L  +     V +A+ +F       A+    D   ++ M+  L  A +   AE
Sbjct: 141 TAFTYTALLHGLLGAGMVREAMTVF---VGMRADSCAPDTHVYATMVHGLCEAGRTEEAE 197

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL+       +    ++ ++  GY        A++VF+ M    C P  ++Y  ++  L
Sbjct: 198 VLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGL 257

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
            +  +++ A   +  M E G++P V +   LI+  C N G +  AF++   M   G  P+
Sbjct: 258 CKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQC-NEGHLQCAFRLLHLMETNGLVPN 316

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            +T+  LI+ LC+  K+ EA+     +  K      V YTSLI+GLC++  ++ A  L +
Sbjct: 317 DWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQ 376

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M S+G  P+  +YSSL+DGLC+    SQA  +L+ M+ K  + + VTY+ +++ L +E 
Sbjct: 377 KMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREV 436

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
             +   +I D+M   G+ PD   Y   +  +C+ G+ ++A + + +MV  G+ PN +T++
Sbjct: 437 GSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYN 496

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG------DIH 424
             IR +  +  GL     ++AF  +  M  +    +  +Y+ L+    KK       DI 
Sbjct: 497 TLIRGYANL--GLV----SQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIW 550

Query: 425 KSARIVDELVL 435
           K A + D  VL
Sbjct: 551 KIADMKDLQVL 561



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 175/412 (42%), Gaps = 87/412 (21%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVH 99
           +NGF  +   ++ +I    +A +   A  + + ++  +C      +  +  G    G+V 
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R   AM +F +M E G EP   +Y  ++     E  L+ AFR    M   G+ P   + +
Sbjct: 265 R---AMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFS 321

Query: 160 VLIKALCK----------------------------------NSGTMDAAFKIFREMPNR 185
           VLI ALCK                                   +G +DAA ++ ++M + 
Sbjct: 322 VLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISE 381

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEA----------------------------------- 210
           G  PD+++Y +LI+GLCR  K+ +A                                   
Sbjct: 382 GFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGP 441

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           K++F +M     +P +VTYT  +   C+   +E+A  +  +M  +GV PN+ TY++L+ G
Sbjct: 442 KKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRG 501

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL---DRMKLQGL 327
               G  SQA    ++M+ K  +PN  +Y+ LL  + K+     +V+I    D   LQ L
Sbjct: 502 YANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVL 561

Query: 328 KPD---------AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
             D         A +Y   I C C + + +EA +F   M    +TP+   ++
Sbjct: 562 LEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYT 613



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 123/296 (41%), Gaps = 68/296 (22%)

Query: 247 RLFEEMRS---KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           R+F +M S   +    N+ TY++L++  C  G    A + L  ++     P+   Y++ +
Sbjct: 55  RMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFV 114

Query: 304 NGLCKEGKLQEAVEILDRMKLQG-----------------------------------LK 328
            G C+ G L  A  +   M L+G                                     
Sbjct: 115 LGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCA 174

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW------------------- 369
           PD  +Y  ++   C+ G+ +EA   L+E +  G  PN + +                   
Sbjct: 175 PDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234

Query: 370 ---------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
                    S ++R +  ++ GLCK+    RA  ++  M    +  + +TY++LI   C 
Sbjct: 235 FEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN 294

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
           +G +  + R++  +  +G +P++ T+S ++ AL  R K+ + A+L L  L+ K V+
Sbjct: 295 EGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE-AQLFLGSLVKKGVK 349



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 87/239 (36%), Gaps = 48/239 (20%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + GF  D  ++S +I  L    +   A  +L+ + ++    +   +  I     R     
Sbjct: 380 SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSE 439

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
              ++FDKM   G  P   +Y   +    EE +++ A      M + G+ P + + N LI
Sbjct: 440 GPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLI 499

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTP--DSYT--------------------------- 193
           +    N G +  AF  F  M  +G  P  DSYT                           
Sbjct: 500 RGY-ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDL 558

Query: 194 ------------------YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
                             Y   I  LCR+ ++ EAK  F  M+    +P+   YTS+I+
Sbjct: 559 QVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIID 617


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 188/375 (50%), Gaps = 15/375 (4%)

Query: 97  RVHRPLDAM-RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           R  R  DA+  V+ KM      P   S   +    V  +    AF     M + G    V
Sbjct: 53  RKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNV 112

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMP-NRGC-TPDSYTYGTLINGLCRLGKIYEAKEL 213
            +LN+++K  C+ SG  D A  +F +M  N  C  PD  TY TL+NG C+  ++ EA+ L
Sbjct: 113 YNLNLVLKGFCR-SGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVL 171

Query: 214 FKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           F+ M+    C P +VTY+ LI+  C+S  V E + L EEM  +G++ +VF YSSL+   C
Sbjct: 172 FEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFC 231

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
             G      EL   M+ ++  PN+VTYS L+ GL + G+ +EA E+L  M  +G++PD  
Sbjct: 232 GEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVV 291

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            Y  +    C  G+  +A   LD MV  G  P  LT+       N VV GLCK D  + A
Sbjct: 292 AYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTY-------NVVVNGLCKEDRMDDA 344

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD--GCLPDEGTWSAVM 449
           F V   M  +    D++TY++L+   C  G IH++  +   L+ +     PD  T + ++
Sbjct: 345 FGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLI 404

Query: 450 TALWDRRKMRQAAEL 464
             L    ++  AA +
Sbjct: 405 QGLCKEGRVHDAARI 419



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 190/370 (51%), Gaps = 18/370 (4%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMK-EFGCE-PTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
           + +G+ R  +   AM +F +MK  + C  P   +Y T++    +  +L  A   +  M++
Sbjct: 118 VLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKK 177

Query: 149 IG-IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            G  +P + + +VLI   CK SG +     +  EM   G   D + Y +LI+  C  G I
Sbjct: 178 GGDCRPNLVTYSVLIDCYCK-SGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDI 236

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
              +ELF EM  +  SP VVTY+ L+ GL ++    EA  + ++M ++GV P+V  Y+ L
Sbjct: 237 ETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVL 296

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
            DGLCK G +  A+++L +M+ K   P  +TY+ ++NGLCKE ++ +A  +++ M  +G 
Sbjct: 297 ADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGK 356

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH----NTVVQGL 383
           KPDA  Y  ++   C  GK  EA +    +         L+   H++      N ++QGL
Sbjct: 357 KPDAVTYNTLLKGLCGAGKIHEAMDLWKLL---------LSEKFHVKPDVFTCNNLIQGL 407

Query: 384 CKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK    + A +++ SM    +  + +TY+ LI  +     + ++ ++    V  G  P+ 
Sbjct: 408 CKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNS 467

Query: 443 GTWSAVMTAL 452
            T+S ++  L
Sbjct: 468 MTYSVMINGL 477



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 214/474 (45%), Gaps = 70/474 (14%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPL 102
           GF  +    +L++     + Q   A  L  ++ +    +  D   + ++  G+ +  R  
Sbjct: 107 GFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLA 166

Query: 103 DAMRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           +A  +F+ MK+ G C P   +Y  ++    +  ++         M   G++  V   + L
Sbjct: 167 EARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSL 226

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I A C   G ++   ++F EM  R  +P+  TY  L+ GL R G+  EA E+ K+M  + 
Sbjct: 227 ISAFC-GEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARG 285

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VV YT L +GLC++    +A+++ + M  KG EP   TY+ +++GLCK      A 
Sbjct: 286 VRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAF 345

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ--GLKPDAGLYGKIIS 339
            +++MM+ K  +P+ VTY+TLL GLC  GK+ EA+++   +  +   +KPD      +I 
Sbjct: 346 GVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQ 405

Query: 340 CFCDIGKYQEAA------------------NFLDEMVLG-----------------GITP 364
             C  G+  +AA                  NFL E  L                  G +P
Sbjct: 406 GLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSP 465

Query: 365 NRLTWSLHIR----------------------------IHNTVVQGLCKTDP-NRAFQVY 395
           N +T+S+ I                              +N ++  LC+ D   +A  ++
Sbjct: 466 NSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLF 525

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
             MRN + +VD ++++ +I    K GD+  +  ++ E+ +   +PD  T+S ++
Sbjct: 526 QEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILI 579



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 185/398 (46%), Gaps = 9/398 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D   +S +IS            +L D + + K       +  + +G GR  R  +A
Sbjct: 215 GLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREA 274

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +   M   G  P   +Y  +   L +  +   A +    M + G +P   + NV++  
Sbjct: 275 SEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNG 334

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKAC 222
           LCK    MD AF +   M  +G  PD+ TY TL+ GLC  GKI+EA +L+K +  E    
Sbjct: 335 LCKED-RMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHV 393

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V T  +LI GLC+   V +A R+   M   G++ N+ TY+ L++G        +A++
Sbjct: 394 KPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALK 453

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L +  +     PN +TYS ++NGLCK   L  A  +  +MK  G++P    Y  +++  C
Sbjct: 454 LWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLC 513

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
                ++A +   EM    +  N    S +I I  T+  G    D   A ++   M    
Sbjct: 514 REDSLEQARSLFQEM--RNVNHNVDVVSFNIIIDGTLKAG----DVKSAKELLSEMFMMD 567

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           +  D++T+S LI  F K G + ++  + +++V  G +P
Sbjct: 568 LVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVP 605



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 187/405 (46%), Gaps = 46/405 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S ++  L    ++R A ++L  +           +  +  G  +  R  DA++V D M
Sbjct: 257 TYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLM 316

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G EP   +Y  V+  L +E+++  AF     M + G +P   + N L+K LC  +G 
Sbjct: 317 VQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLC-GAGK 375

Query: 172 MDAAFKIFREMPNR--GCTPDSYTYGTLINGLCRLGKIY--------------------- 208
           +  A  +++ + +      PD +T   LI GLC+ G+++                     
Sbjct: 376 IHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTY 435

Query: 209 --------------EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
                         EA +L+K       SP  +TY+ +INGLC+ + +  A  LF +M+ 
Sbjct: 436 NFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKD 495

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G+ P V  Y++LM  LC+     QA  L Q M +  H  ++V+++ +++G  K G ++ 
Sbjct: 496 SGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKS 555

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A E+L  M +  L PDA  +  +I+ F  +G   EA    ++MV  G  P        + 
Sbjct: 556 AKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPG-------VV 608

Query: 375 IHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
           + +++++G   K +  +   +   M ++ + +DS   S+++ C C
Sbjct: 609 VFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLC 653



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 152/316 (48%), Gaps = 11/316 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGYGRV 98
           G + D  T++ ++  L  A +   A DL   +  EK  +  D+F        +C+  GRV
Sbjct: 355 GKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCK-EGRV 413

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H   DA R+   M E G +    +Y  ++   +   +L  A + +++  E G  P   + 
Sbjct: 414 H---DAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTY 470

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           +V+I  LCK    +  A  +F +M + G  P    Y  L+  LCR   + +A+ LF+EM 
Sbjct: 471 SVMINGLCKMQ-MLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMR 529

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
               +  VV++  +I+G  ++  V+ A  L  EM    + P+  T+S L++   K G   
Sbjct: 530 NVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLD 589

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +AM L + M+S  H P +V + +LL G   +G+ ++ + +L +M  + +  D+ L   I+
Sbjct: 590 EAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTIL 649

Query: 339 SCFCDIGKYQEAANFL 354
           +C C + +  +    L
Sbjct: 650 ACLCHMSRNLDVEKIL 665



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 141/332 (42%), Gaps = 53/332 (15%)

Query: 173 DAAFKIFREMPNRGCTPDSYTY-GTLINGLCRLGKIYEAK-ELFKEMETKACSPTVVTYT 230
           DA     R + N   +P S     TLI+ L R  + Y+A   ++ +M +    P   + +
Sbjct: 23  DAVSLFHRTIDNDPTSPPSEPACSTLIDNL-RKARQYDAVVSVYHKMVSALVLPRFTSLS 81

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +L      +     A  +   M  +G   NV+  + ++ G C+ G   +AM L   M  K
Sbjct: 82  ALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQM--K 139

Query: 291 RH----------------------------------------RPNIVTYSTLLNGLCKEG 310
           R+                                        RPN+VTYS L++  CK G
Sbjct: 140 RNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSG 199

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           ++ E + +L+ M+ +GLK D  +Y  +IS FC  G  +      DEM+   ++PN +T+S
Sbjct: 200 EVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYS 259

Query: 371 LHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                   ++QGL +T   R A ++   M  R +  D + Y+ L    CK G    + ++
Sbjct: 260 -------CLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKV 312

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +D +V  G  P   T++ V+  L    +M  A
Sbjct: 313 LDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDA 344


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 192/357 (53%), Gaps = 10/357 (2%)

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           ++Y T++        +  A +    +   G+ P   +    +   C+ +G +  A ++F 
Sbjct: 73  RTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCR-AGMLTHACRVFV 131

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
            MP RGC   ++TY  L++GL   G + EA  +F  M   +C+P    Y ++++GLC++ 
Sbjct: 132 LMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAG 191

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
             EEA  L EE  S G EPN+  Y++L+DG C  G    A+++ + M   R  PN+ TY+
Sbjct: 192 RTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYT 251

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            L++GLCK GK++ A+ +  RM   GL+P+   Y  +I   C+ G  Q A   L  M   
Sbjct: 252 ELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETN 311

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCK 419
           G+ PN  T+S+       ++  LCK +     Q++L S+  + + V+ + Y+SLI   CK
Sbjct: 312 GLVPNDWTFSV-------LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCK 364

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476
            G I  +  ++ +++ +G +PD  ++S+++  L  ++K+ QA  L+L ++M K ++A
Sbjct: 365 TGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQAT-LMLEDMMEKGIQA 420



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 183/359 (50%), Gaps = 7/359 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM VF  M+   C P    Y T++  L E  + + A          G +P +   N LI
Sbjct: 160 EAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALI 219

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C N+G M+ A K+F  M    C+P+  TY  LI+GLC+ GK+  A  LF  M     
Sbjct: 220 DGYC-NAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGL 278

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTYT+LI G C    ++ A RL   M + G+ PN +T+S L+D LCK     +A  
Sbjct: 279 EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQL 338

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L  ++ K  + N V Y++L++GLCK GK+  A E++ +M  +G  PDA  Y  +I   C
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC 398

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
              K  +A   L++M+  GI  + +T+++   I + +V+ +    P + F     M    
Sbjct: 399 RQKKLSQATLMLEDMMEKGIQASPVTYTI---IIDELVREVGSEGPKKIFD---KMIATG 452

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           I+ D +TY+  +  +C++G +  +  ++ ++V  G  P+  T++ ++    +   + QA
Sbjct: 453 INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQA 511



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 229/485 (47%), Gaps = 22/485 (4%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T  T   +L  +     V +A+ +F       A+    D   ++ M+  L  A +   AE
Sbjct: 141 TAFTYTALLHGLLGAGMVREAMAVF---VGMRADSCAPDTHVYATMVHGLCEAGRTEEAE 197

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL+       +    ++ ++  GY        A++VF+ M    C P  ++Y  ++  L
Sbjct: 198 VLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGL 257

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
            +  +++ A   +  M E G++P V +   LI+  C N G +  AF++   M   G  P+
Sbjct: 258 CKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQC-NEGHLQCAFRLLHLMETNGLVPN 316

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            +T+  LI+ LC+  K+ EA+     +  K      V YTSLI+GLC++  ++ A  L +
Sbjct: 317 DWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQ 376

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M S+G  P+  +YSSL+DGLC+    SQA  +L+ M+ K  + + VTY+ +++ L +E 
Sbjct: 377 KMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREV 436

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
             +   +I D+M   G+ PD   Y   +  +C+ G+ ++A + + +MV  G+ PN +T++
Sbjct: 437 GSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYN 496

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA--- 427
             IR +  +  GL     ++AF  +  M  +    +  +Y+ L+    KK     S    
Sbjct: 497 TLIRGYANL--GLV----SQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIW 550

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL---------ELMNKCVEAEV 478
           +I D   L     DE  W  ++  L  +  + + + LL +           +N  +  E+
Sbjct: 551 KIADMKDLQESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMITGEI 610

Query: 479 DIQNQ 483
            + N+
Sbjct: 611 TVTNE 615



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 123/296 (41%), Gaps = 68/296 (22%)

Query: 247 RLFEEMRS---KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           R+F +M S   +    N+ TY++L++  C  G    A + L  ++     P+   Y++ +
Sbjct: 55  RMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFV 114

Query: 304 NGLCKEGKLQEAVEILDRMKLQG-----------------------------------LK 328
            G C+ G L  A  +   M L+G                                     
Sbjct: 115 LGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCA 174

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW------------------- 369
           PD  +Y  ++   C+ G+ +EA   L+E +  G  PN + +                   
Sbjct: 175 PDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234

Query: 370 ---------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
                    S ++R +  ++ GLCK+    RA  ++  M    +  + +TY++LI   C 
Sbjct: 235 FEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN 294

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
           +G +  + R++  +  +G +P++ T+S ++ AL  R K+ + A+L L  L+ K V+
Sbjct: 295 EGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE-AQLFLGSLVKKGVK 349


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 200/372 (53%), Gaps = 13/372 (3%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPLDA 104
           R +  T++ +I+   S  + + A D++ R  +E+  I  +   + ++  G+ +V R  +A
Sbjct: 142 RPNAVTYNTVIAGFCSRGRVQAALDIM-REMRERGGIAPNQYTYGTVISGWCKVGRVDEA 200

Query: 105 MRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           ++VFD+M   G  +P    Y  ++    ++ +L  A  +   M E G+   VA+ N+L+ 
Sbjct: 201 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 260

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL  + G    A+++  EM  +G  PD +TY  LING C+ G + +A E+F+ M  +   
Sbjct: 261 ALFMD-GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR 319

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            TVVTYT+LI  L +   V+E  +LF+E   +G+ P++  Y++L++     G   +A E+
Sbjct: 320 ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEI 379

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M  KR  P+ VTY+TL+ GLC  G++ EA +++D M  +G++PD   Y  +IS +  
Sbjct: 380 MGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSM 439

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G  ++A    +EM+  G  P  LT+       N ++QGLCK    + A  +   M    
Sbjct: 440 KGDVKDALRIRNEMMNKGFNPTLLTY-------NALIQGLCKNGQGDDAENMVKEMVENG 492

Query: 403 ISVDSLTYSSLI 414
           I+ D  TY SLI
Sbjct: 493 ITPDDSTYISLI 504



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 207/422 (49%), Gaps = 19/422 (4%)

Query: 38  ATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           A A +A+ FR       +TF++M+  L SA +   A +LL ++ +        +    C 
Sbjct: 98  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFC- 156

Query: 94  GYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-I 151
             GRV   LD MR   +M+E  G  P   +Y TV++   +  ++  A + +  M   G +
Sbjct: 157 SRGRVQAALDIMR---EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 213

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P     N LI   C + G +D A      M  RG      TY  L++ L   G+  EA 
Sbjct: 214 KPEAVMYNALIGGYC-DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 272

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           EL +EM  K  +P V TY  LING C+  +V++A+ +FE M  +GV   V TY++L+  L
Sbjct: 273 ELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYAL 332

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
            K G   +  +L    + +  RP++V Y+ L+N     G +  A EI+  M+ + + PD 
Sbjct: 333 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 392

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNR 390
             Y  ++   C +G+  EA   +DEM   GI P+ +T+       NT++ G   K D   
Sbjct: 393 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY-------NTLISGYSMKGDVKD 445

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A ++   M N+  +   LTY++LI   CK G    +  +V E+V +G  PD+ T+ +++ 
Sbjct: 446 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 505

Query: 451 AL 452
            L
Sbjct: 506 GL 507



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 175/323 (54%), Gaps = 10/323 (3%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEA 210
           +P   + N +I   C + G + AA  I REM  RG   P+ YTYGT+I+G C++G++ EA
Sbjct: 142 RPNAVTYNTVIAGFC-SRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 200

Query: 211 KELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            ++F EM TK    P  V Y +LI G C    ++ A+   + M  +GV   V TY+ L+ 
Sbjct: 201 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 260

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            L   G  ++A EL++ M  K   P++ TY+ L+NG CKEG +++A+EI + M  +G++ 
Sbjct: 261 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 320

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
               Y  +I      G+ QE     DE V  GI P+ + ++  I  H+T        + +
Sbjct: 321 TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHST------SGNID 374

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           RAF++   M  + I+ D +TY++L+   C  G + ++ +++DE+   G  PD  T++ ++
Sbjct: 375 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 434

Query: 450 TALWDRRKMRQAAELLLLELMNK 472
           +    +  ++ A   +  E+MNK
Sbjct: 435 SGYSMKGDVKDALR-IRNEMMNK 456



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 137/261 (52%), Gaps = 5/261 (1%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVF 108
           +T++L++  L    +   A +L++ +  +   +  D+F    +  G+ +      A+ +F
Sbjct: 253 ATYNLLVHALFMDGRGTEAYELVEEMGGK--GLAPDVFTYNILINGHCKEGNVKKALEIF 310

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M   G   T  +Y  ++  L ++ Q++   + +      GI+P +   N LI +    
Sbjct: 311 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS-HST 369

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG +D AF+I  EM  +   PD  TY TL+ GLC LG++ EA++L  EM  +   P +VT
Sbjct: 370 SGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVT 429

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI+G      V++A+R+  EM +KG  P + TY++L+ GLCK G    A  +++ M+
Sbjct: 430 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMV 489

Query: 289 SKRHRPNIVTYSTLLNGLCKE 309
                P+  TY +L+ GL  E
Sbjct: 490 ENGITPDDSTYISLIEGLTTE 510



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 126/271 (46%), Gaps = 30/271 (11%)

Query: 210 AKELFKEMET--KACSPTVV------TYTSLINGLCQSKSV----EEAMRLFEEMRSKGV 257
           A  LFK + +  KA SP  V        +SL N L  + +       ++RL+  M+S  +
Sbjct: 20  ALALFKSVLSADKALSPLAVLPHLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSL 79

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
             +  +   L+  L     S+ A  L   M   R      T++ +L  LC  GK   A+E
Sbjct: 80  PISTASLHPLLSALP----SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALE 135

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM-VLGGITPNRLTWSLHIRIH 376
           +L +M     +P+A  Y  +I+ FC  G+ Q A + + EM   GGI PN+ T+       
Sbjct: 136 LLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYG------ 185

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            TV+ G CK    + A +V+  M  +  +  +++ Y++LI  +C +G +  +    D +V
Sbjct: 186 -TVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMV 244

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G      T++ ++ AL+   +  +A EL+
Sbjct: 245 ERGVAMTVATYNLLVHALFMDGRGTEAYELV 275



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 4/192 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           +T +T   ++  +  +  V +   +FD A      G R D   ++ +I+   ++     A
Sbjct: 320 ATVVTYTALIYALSKKGQVQETDKLFDEAVRR---GIRPDLVLYNALINSHSTSGNIDRA 376

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
            +++  + K++    +  + ++ RG   + R  +A ++ D+M E G +P   +Y T+++ 
Sbjct: 377 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 436

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
              +  +K A R    M   G  P + + N LI+ LCKN G  D A  + +EM   G TP
Sbjct: 437 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN-GQGDDAENMVKEMVENGITP 495

Query: 190 DSYTYGTLINGL 201
           D  TY +LI GL
Sbjct: 496 DDSTYISLIEGL 507


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 202/401 (50%), Gaps = 45/401 (11%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           IC G+ ++    +A++++ +M   G + +  S   +L  L +  Q+ +AF+ +  M   G
Sbjct: 393 IC-GHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANG 451

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           ++P + + + LI  LCK  G +  A  ++ +M +    P+S  +G ++ GLC  GKI +A
Sbjct: 452 LRPDLITYSTLIHGLCKQ-GEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQA 510

Query: 211 K-----------------------------------ELFKEMETKACSPTVVTYTSLING 235
           +                                   +L+K++  K  SPT+VT+ SL+ G
Sbjct: 511 RMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYG 570

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C ++ + +A RL + ++  G+EPN  TY++LM+  C+ G     +ELL  M +K   P 
Sbjct: 571 FCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPT 630

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
            +TY+ ++ GLCK+ KLQE+ ++L+ M   GL PD   Y  II  FC     ++A    D
Sbjct: 631 HITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYD 690

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
           +M+L  + P  +T+       N ++ G C   D   A  + +S++NR ++++   Y+++I
Sbjct: 691 KMLLHNLEPTSVTY-------NILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTII 743

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
              C KGD+ K+     ++V  G       +SAV+  L  R
Sbjct: 744 KAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKR 784



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 201/376 (53%), Gaps = 9/376 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           +  G  R  R  DA+  F   +    +P+  S+ T+++   +   + +A  F+  M + G
Sbjct: 252 VVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHG 311

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           + P   S N+LI  LC  +G+M  A  +  +M N G  PD  TY  L  G   LG I  A
Sbjct: 312 LLPDAYSYNILIHGLCI-AGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGA 370

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             + ++M  K  +P +VTYT LI G CQ  +VEEA++L++EM S G + ++ + + L+  
Sbjct: 371 WNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGS 430

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           LCK      A +L   M +   RP+++TYSTL++GLCK+G++Q+A+ + ++M    + P+
Sbjct: 431 LCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPN 490

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR 390
           + ++G I+   C+ GK  +A  + D ++   +       SL I ++N ++ G  K    R
Sbjct: 491 SLIHGAILMGLCEKGKISQARMYFDYLITSNL-------SLDIILYNIMIDGYIKRGNTR 543

Query: 391 -AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A ++Y  +  + IS   +T++SL+  FC    + ++ R++D + L G  P+  T++ +M
Sbjct: 544 EAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLM 603

Query: 450 TALWDRRKMRQAAELL 465
               +   M+   ELL
Sbjct: 604 NVYCEEGNMQSLLELL 619



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 216/424 (50%), Gaps = 9/424 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  +++++I  L  A     A DL + +     +     +  + +G+  +     
Sbjct: 310 HGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLING 369

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +  KM   G  P   +Y  ++    +   ++ A + Y+ M   G Q  + S  VL+ 
Sbjct: 370 AWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLG 429

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +LCK S  +D AFK+F EM   G  PD  TY TLI+GLC+ G++ +A  L+++M +    
Sbjct: 430 SLCK-SRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRII 488

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  + + +++ GLC+   + +A   F+ + +  +  ++  Y+ ++DG  K G + +A++L
Sbjct: 489 PNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKL 548

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + +  K   P IVT+++L+ G C   KL +A  +LD +KL GL+P+A  Y  +++ +C+
Sbjct: 549 YKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCE 608

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G  Q     L EM    I P  +T+++       V++GLCK      + Q+   M    
Sbjct: 609 EGNMQSLLELLSEMKAKAIGPTHITYTV-------VIKGLCKQWKLQESCQLLEDMDAVG 661

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           ++ D ++Y+++I  FCK  D+ K+ ++ D+++L    P   T++ ++        ++ A 
Sbjct: 662 LTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDAD 721

Query: 463 ELLL 466
            LL+
Sbjct: 722 NLLV 725



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 183/401 (45%), Gaps = 15/401 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ANG R D  T+S +I  L    + + A  L +++   +      I  +I  G     +  
Sbjct: 449 ANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKIS 508

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A   FD +           Y  ++   ++    + A + Y+ + E GI P + + N L+
Sbjct: 509 QARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLM 568

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C N   +  A ++   +   G  P++ TY TL+N  C  G +    EL  EM+ KA 
Sbjct: 569 YGFCINR-KLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAI 627

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT +TYT +I GLC+   ++E+ +L E+M + G+ P+  +Y++++   CK     +A +
Sbjct: 628 GPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQ 687

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M+     P  VTY+ L+NG C  G L++A  +L  ++ + +  +   Y  II   C
Sbjct: 688 LYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHC 747

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSM 398
             G   +A  +  +MV  G       + + IR ++ V+  LCK    T+    F + LS 
Sbjct: 748 AKGDVDKAVVYFRQMVEKG-------FEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLS- 799

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
               +  D   +  L+  F + G ++    ++ E++  G L
Sbjct: 800 --DGVCPDQDLFEVLLNAFHQCGHLNSEFELLAEMIKSGWL 838


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 192/357 (53%), Gaps = 10/357 (2%)

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           ++Y T++        +  A +    +   G+ P   +    +   C+ +G +  A ++F 
Sbjct: 73  RTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCR-AGMLTHACRVFV 131

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
            MP RGC   ++TY  L++GL   G + EA  +F  M   +C+P    Y ++++GLC++ 
Sbjct: 132 LMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAG 191

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
             EEA  L EE  S G EPN+  Y++L+DG C  G    A+++ + M   R  PN+ TY+
Sbjct: 192 RTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYT 251

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            L++GLCK GK++ A+ +  RM   GL+P+   Y  +I   C+ G  Q A   L  M   
Sbjct: 252 ELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETN 311

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCK 419
           G+ PN  T+S+       ++  LCK +     Q++L S+  + + V+ + Y+SLI   CK
Sbjct: 312 GLVPNDWTFSV-------LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCK 364

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476
            G I  +  ++ +++ +G +PD  ++S+++  L  ++K+ QA  L+L ++M K ++A
Sbjct: 365 TGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQAT-LMLEDMMEKGIQA 420



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 183/359 (50%), Gaps = 7/359 (1%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM VF  M+   C P    Y T++  L E  + + A          G +P +   N LI
Sbjct: 160 EAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALI 219

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C N+G M+ A K+F  M    C+P+  TY  LI+GLC+ GK+  A  LF  M     
Sbjct: 220 DGYC-NAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGL 278

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTYT+LI G C    ++ A RL   M + G+ PN +T+S L+D LCK     +A  
Sbjct: 279 EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQL 338

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            L  ++ K  + N V Y++L++GLCK GK+  A E++ +M  +G  PDA  Y  +I   C
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC 398

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
              K  +A   L++M+  GI  + +T+++   I + +V+ +    P + F     M    
Sbjct: 399 RQKKLSQATLMLEDMMEKGIQASPVTYTI---IIDELVREVGSEGPKKIFD---KMIATG 452

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           I+ D +TY+  +  +C++G +  +  ++ ++V  G  P+  T++ ++    +   + QA
Sbjct: 453 INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQA 511



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 219/467 (46%), Gaps = 48/467 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVH 99
           +NGF  +   ++ +I    +A +   A  + + ++  +C      +  +  G    G+V 
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R   AM +F +M E G EP   +Y  ++     E  L+ AFR    M   G+ P   + +
Sbjct: 265 R---AMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFS 321

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           VLI ALCK     +A       +  +G   +   Y +LI+GLC+ GKI  A EL ++M +
Sbjct: 322 VLIDALCKREKVEEAQL-FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMIS 380

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +   P   +Y+SLI+GLC+ K + +A  + E+M  KG++ +  TY+ ++D L +   S  
Sbjct: 381 EGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEG 440

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
             ++   MI+    P+IVTY+  +   C+EG++++A  ++ +M  +G+ P+   Y  +I 
Sbjct: 441 PKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIR 500

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------------------------- 374
            + ++G   +A +  + MV  G  PN  ++++ +R                         
Sbjct: 501 GYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQV 560

Query: 375 ---------------IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
                          I++  ++ LC+ D    A   ++ M+N +++     Y+S+I C C
Sbjct: 561 LLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCC 620

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +   +  +  ++D +   G LP   ++  ++++L +    R A E+ 
Sbjct: 621 RLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVF 667



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 210/432 (48%), Gaps = 18/432 (4%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T  T   +L  +     V +A+ +F       A+    D   ++ M+  L  A +   AE
Sbjct: 141 TAFTYTALLHGLLGAGMVREAMAVF---VGMRADSCAPDTHVYATMVHGLCEAGRTEEAE 197

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL+       +    ++ ++  GY        A++VF+ M    C P  ++Y  ++  L
Sbjct: 198 VLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGL 257

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
            +  +++ A   +  M E G++P V +   LI+  C N G +  AF++   M   G  P+
Sbjct: 258 CKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQC-NEGHLQCAFRLLHLMETNGLVPN 316

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            +T+  LI+ LC+  K+ EA+     +  K      V YTSLI+GLC++  ++ A  L +
Sbjct: 317 DWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQ 376

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M S+G  P+  +YSSL+DGLC+    SQA  +L+ M+ K  + + VTY+ +++ L +E 
Sbjct: 377 KMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREV 436

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
             +   +I D+M   G+ PD   Y   +  +C+ G+ ++A + + +MV  G+ PN +T+ 
Sbjct: 437 GSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTY- 495

Query: 371 LHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG------DI 423
                 NT+++G       ++AF  +  M  +    +  +Y+ L+    KK       DI
Sbjct: 496 ------NTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDI 549

Query: 424 HKSARIVDELVL 435
            K A + D  VL
Sbjct: 550 WKIADMKDLQVL 561



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 172/419 (41%), Gaps = 55/419 (13%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   ++ TFS++I  L    +   A+  L  + K+   + E ++ S+  G  +  +   
Sbjct: 311 NGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDA 370

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +  KM   G  P   SY +++  L  + +L  A      M E GIQ    +  ++I 
Sbjct: 371 ADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIID 430

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L +  G+ +   KIF +M   G  PD  TY   +   C  G++ +A+ +  +M  +   
Sbjct: 431 ELVREVGS-EGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVF 489

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P +VTY +LI G      V +A   FE M  KG +PN  +Y+ L+  + K   S  ++++
Sbjct: 490 PNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDI 549

Query: 284 --------LQMM---ISKRHRPNIV-TYSTLLNGLCKEGKLQEA---------------- 315
                   LQ++   I++R  P     YS  +  LC+  +L+EA                
Sbjct: 550 WKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSE 609

Query: 316 -------------------VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
                              + +LD M   G  P    Y  IIS  C+ G ++ A     +
Sbjct: 610 DVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGD 669

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
           ++L     + + W +       ++ GL +      F   LS+        S T +++IT
Sbjct: 670 LLLKESNYDEIVWKI-------LIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMIT 721



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 141/356 (39%), Gaps = 48/356 (13%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + GF  D  ++S +I  L    +   A  +L+ + ++    +   +  I     R     
Sbjct: 380 SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSE 439

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
              ++FDKM   G  P   +Y   +    EE +++ A      M + G+ P + + N LI
Sbjct: 440 GPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLI 499

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTP--DSYT--------------------------- 193
           +    N G +  AF  F  M  +G  P  DSYT                           
Sbjct: 500 RGY-ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDL 558

Query: 194 ------------------YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
                             Y   I  LCR+ ++ EAK  F  M+    +P+   YTS+I+ 
Sbjct: 559 QVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDC 618

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C+ K + +A+ L + M   G  P++ +Y  ++  LC+GG    A E+   ++ K    +
Sbjct: 619 CCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYD 678

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            + +  L+ GL ++G + E   +L  MK  G +P   +   I        + QE A
Sbjct: 679 EIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMITGEITVTNEVQEIA 734



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 123/296 (41%), Gaps = 68/296 (22%)

Query: 247 RLFEEMRS---KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
           R+F +M S   +    N+ TY++L++  C  G    A + L  ++     P+   Y++ +
Sbjct: 55  RMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFV 114

Query: 304 NGLCKEGKLQEAVEILDRMKLQG-----------------------------------LK 328
            G C+ G L  A  +   M L+G                                     
Sbjct: 115 LGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCA 174

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW------------------- 369
           PD  +Y  ++   C+ G+ +EA   L+E +  G  PN + +                   
Sbjct: 175 PDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234

Query: 370 ---------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
                    S ++R +  ++ GLCK+    RA  ++  M    +  + +TY++LI   C 
Sbjct: 235 FEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN 294

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
           +G +  + R++  +  +G +P++ T+S ++ AL  R K+ + A+L L  L+ K V+
Sbjct: 295 EGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE-AQLFLGSLVKKGVK 349


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 226/454 (49%), Gaps = 36/454 (7%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLD--RVNKEKCDITEDIFLSICRGYGRVHR 100
             GF  ++ TF+++IS L        A  L+D  R++K+    T +  ++     G V R
Sbjct: 267 GGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKASSFTYNPLITALLERGFV-R 325

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A+++  +M+  G  PT  +Y  ++  L++  Q + A   +  MR +G+ P V + N 
Sbjct: 326 KAEALQM--EMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNS 383

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+   CK +G +  A  +  ++   G  P   TY TLI+G CRLG + EA+ L +EM  +
Sbjct: 384 LLNRYCK-AGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQ 442

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C P V TYT L+NG  + +++  A   F+EM SKG++P+ F Y++ +        +  A
Sbjct: 443 GCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMA 502

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +L ++M+ K   P+ VTY+ +++GLCK G L++A  +  +M   GL+PD   Y  +I  
Sbjct: 503 FQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHA 562

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------------------------- 374
            C+ G  +EA   L+ MV  G+ P+ +T+++ +                           
Sbjct: 563 HCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPN 622

Query: 375 --IHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
              +N ++  LC T     AF+ +  M  R ++ +  TY+ LI   C++G+   + R+  
Sbjct: 623 EITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYF 682

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           E+  +G  PD  T +A+    +D   M  A E +
Sbjct: 683 EMHQNGIPPDYCTHNALFKG-FDEGHMYHAIEYM 715



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 10/365 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV--ASLNV 160
           D   V+ +M +   EPT  +Y T+L   ++E +   A    + M   G    +   + NV
Sbjct: 220 DVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNV 279

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I  L +  G ++ A K+   M        S+TY  LI  L   G + +A+ L  EME +
Sbjct: 280 VISFLAR-EGHLENAVKLVDSM-RLSKKASSFTYNPLITALLERGFVRKAEALQMEMENE 337

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              PTVVTY ++I+GL + +  E A   F EMR+ G+ P+V TY+SL++  CK G   +A
Sbjct: 338 GIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEA 397

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + LL  +      P ++TY+TL++G C+ G L EA  + + M  QG  PD   Y  +++ 
Sbjct: 398 LWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNG 457

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN 400
              +     A  F DEM+  G+ P+   ++  I         L  +    AFQ+   M  
Sbjct: 458 SRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRI------CAELTLSSTPMAFQLREVMML 511

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + I  D++TY+ +I   CK G++  + R+  ++V DG  PD  T++ ++ A  +R  +R+
Sbjct: 512 KGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLRE 571

Query: 461 AAELL 465
           A +LL
Sbjct: 572 ARKLL 576



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 145/319 (45%), Gaps = 47/319 (14%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G+ P V   N +++ L +++   D    ++ EM      P   TY TL++   + G+  E
Sbjct: 197 GVAPDVRDCNRVLRVL-RDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDE 255

Query: 210 AKELFKEMETKACSPTV--VTYTSLINGLCQSKSVEEAMRLFEEMR-SKGVEPNVFTYSS 266
           A  L KEMET+    ++  VT+  +I+ L +   +E A++L + MR SK  + + FTY+ 
Sbjct: 256 ASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSK--KASSFTYNP 313

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+  L + G   +A  L   M ++   P +VTY+ +++GL K  + + A      M+  G
Sbjct: 314 LITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMG 373

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L PD   Y  +++ +C  G  +EA   L ++   G+ P                      
Sbjct: 374 LLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPT--------------------- 412

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
                                LTY++LI  +C+ GD+ ++ R+ +E+V  GC PD  T++
Sbjct: 413 --------------------VLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYT 452

Query: 447 AVMTALWDRRKMRQAAELL 465
            +M      R +  A E  
Sbjct: 453 ILMNGSRKVRNLAMAREFF 471



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 11/182 (6%)

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
             CS+  +   +++      P++   + +L  L    +  +   +   M    ++P    
Sbjct: 180 AACSTLCLAAFRLVTCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVT 239

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVL--GGITPNRLTWSLHIRIHNTVVQGLCKTDP-NR 390
           Y  ++  F   G+  EA+  L EM    GG + N +T+       N V+  L +      
Sbjct: 240 YNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTF-------NVVISFLAREGHLEN 292

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A ++  SMR  S    S TY+ LIT   ++G + K+  +  E+  +G +P   T++A++ 
Sbjct: 293 AVKLVDSMR-LSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIH 351

Query: 451 AL 452
            L
Sbjct: 352 GL 353


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 209/436 (47%), Gaps = 24/436 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  +  T + +I  L    + + A    D+V  +   + +  + ++  G  +       
Sbjct: 128 GYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAV 187

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+  K++    +P    Y T++  L +   L  A   Y  M   GI P V + N L+  
Sbjct: 188 ARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYG 247

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  AF +  EM  +   PD  T+ TLI+ L + GK+  AK +   M      P
Sbjct: 248 FCI-MGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKP 306

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY SLI+G      V+ A  +F  M   GV PNV TY++++DGLCK     +AM L 
Sbjct: 307 DVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLF 366

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P+IVTY++L++GLCK   L+ A+ +  +MK QG++PD   Y  ++   C  
Sbjct: 367 EEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKG 426

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+ + A  F   +++ G       + L+++ +N ++ GLCK D    A  +   M  +  
Sbjct: 427 GRLENAKEFFQRLLVKG-------YHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGC 479

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D++T+ ++I    +K +  K+ +I+ E++  G              L + RK+R    
Sbjct: 480 MPDAITFKTIICALFEKDENDKAEKILREMIARG--------------LQEARKVRLKEA 525

Query: 464 LLLLELMNK-CVEAEV 478
            ++L +M K C++ +V
Sbjct: 526 KIVLAVMTKACIKPDV 541



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/526 (24%), Positives = 233/526 (44%), Gaps = 91/526 (17%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ KAL   D   A+   GF+ +  ++  +I+ L    + +    LL ++          
Sbjct: 148 EIKKALYFHDQVVAQ---GFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVV 204

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ +I     +     DA  ++ +M   G  P   +Y  ++        LK AF     M
Sbjct: 205 MYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEM 264

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAF------------------------------ 176
           +   I P V + N LI AL K  G M AA                               
Sbjct: 265 KLKNINPDVCTFNTLIDALGK-EGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNK 323

Query: 177 -----KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
                 +F  M   G TP+  TY T+I+GLC+   + EA  LF+EM+ K   P +VTYTS
Sbjct: 324 VKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTS 383

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+GLC++  +E A+ L ++M+ +G++P+V++Y+ L+D LCKGG    A E  Q ++ K 
Sbjct: 384 LIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKG 443

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
           +  N+ TY+ ++NGLCK     EA+++  +M+ +G  PDA  +  II    +  +  +A 
Sbjct: 444 YHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAE 503

Query: 352 NFLDEMVLGG-----------------------ITPNRLTW------------------- 369
             L EM+  G                       I P+ +T+                   
Sbjct: 504 KILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYV 563

Query: 370 ---------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
                    + +++ +  ++ GLCK    + A  ++  M+++++  + +TY+SLI   CK
Sbjct: 564 FYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCK 623

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              + ++  ++ E+   G  PD  +++ ++  L    ++  A E+ 
Sbjct: 624 NHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIF 669



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 180/391 (46%), Gaps = 30/391 (7%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+  FD+M      P    +  +L+ LV           ++     G  P + +LN+L+ 
Sbjct: 47  AVASFDRMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMN 106

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C  +  +  AF +   +  RG  P++ T  TLI GLC  G+I +A     ++  +   
Sbjct: 107 CFCHLTH-ITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQ 165

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              V+Y +LINGLC++   +   RL  ++    V+P+V  Y++++  LCK      A +L
Sbjct: 166 LNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDL 225

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI K   PN+VTY+ L+ G C  G L+EA  +L+ MKL+ + PD   +  +I     
Sbjct: 226 YSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGK 285

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTW----------------------------SLHIRI 375
            GK + A   L  M+   I P+ +T+                            + ++R 
Sbjct: 286 EGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRT 345

Query: 376 HNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           + T++ GLCK    + A  ++  M+ +++  D +TY+SLI   CK   + ++  +  ++ 
Sbjct: 346 YTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMK 405

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G  PD  +++ ++ AL    ++  A E  
Sbjct: 406 EQGIQPDVYSYTILLDALCKGGRLENAKEFF 436



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 173/340 (50%), Gaps = 22/340 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  ++++++  L    +   A++   R+  +   +    +  +  G  +     +A
Sbjct: 408 GIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEA 467

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM--------REIGIQPCVA 156
           M +  KM+  GC P   ++ T++  L E+++   A +  R M        R++ ++    
Sbjct: 468 MDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKI 527

Query: 157 SLNVLIKALCK----NSGT-MDAAF---------KIFREMPNRGCTPDSYTYGTLINGLC 202
            L V+ KA  K      GT MD  F          +F  M   G TP+   Y  +I+GLC
Sbjct: 528 VLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLC 587

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           +   + EA  LF+EM+ K   P +VTYTSLI+ LC++  +E A+ L +EM+  G++P+V+
Sbjct: 588 KKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVY 647

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           +Y+ L+DGLCK G    A E+ Q ++ K +  N+  Y+ ++N LCK G   EA+++  +M
Sbjct: 648 SYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKM 707

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           + +G  PDA  +  II    +  +  +A   L EM+  G+
Sbjct: 708 EDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 191/387 (49%), Gaps = 32/387 (8%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +AM +F++MK     P   +Y +++  L + + L+ A    + M+E GIQP V S  +L+
Sbjct: 361 EAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILL 420

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            ALCK  G ++ A + F+ +  +G   +  TY  +INGLC+     EA +L  +ME K C
Sbjct: 421 DALCK-GGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGC 479

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-----------------------VEP 259
            P  +T+ ++I  L +    ++A ++  EM ++G                       ++P
Sbjct: 480 MPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKP 539

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +V TY +LMDG         A  +   M      PN+  Y+ +++GLCK+  + EA+ + 
Sbjct: 540 DVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLF 599

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           + MK + + P+   Y  +I   C     + A   L EM   GI P+  ++++       +
Sbjct: 600 EEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTI-------L 652

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           + GLCK+     A +++  +  +   ++   Y+++I   CK G   ++  +  ++   GC
Sbjct: 653 LDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGC 712

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
           +PD  T+  ++ AL+++ +  +A ++L
Sbjct: 713 MPDAVTFDIIIWALFEKDENDKAEKIL 739


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 185/346 (53%), Gaps = 18/346 (5%)

Query: 99  HRPLDAMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +R  +A+ +   M + G  C P   SY TV+    +E  L         M +  I P V 
Sbjct: 65  NRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLD-------KMLDQRISPNVV 117

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N +I ALCK + T+D A ++   M   G  PD  TY ++++G C  G+  EA    K+
Sbjct: 118 TYNSIIAALCK-AQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKK 176

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M +    P VVTY SL++ LC++    EA ++F+ M  +G++P++ TY +L+ G    G 
Sbjct: 177 MRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGA 236

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +   LL +M+     PN   +S L+    K+ K++EA+ +  +M+ QGL P+A  YG 
Sbjct: 237 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           +I   C  G+ ++A  + ++M+  G+ P+ +       ++N+++  LC  D   +A +++
Sbjct: 297 VIDVLCKSGRVEDAMLYFEQMIDEGLRPDSI-------VYNSLIHSLCIFDKWEKAEELF 349

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           L M +R I + ++ ++S+I   CK+G + +S ++ D +V  G  PD
Sbjct: 350 LEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 174/325 (53%), Gaps = 19/325 (5%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEA 210
           P V S N+L+  LC  + + +A  ++   M + G  C PD  +Y T+ING  + G +   
Sbjct: 49  PDVFSYNILLNGLCDENRSQEA-LELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL--- 104

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
                +M  +  SP VVTY S+I  LC++++V++AM +   M   GV P+  TY+S++ G
Sbjct: 105 ----DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 160

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
            C  G   +A+  L+ M S    P++VTY++L++ LCK G+  EA +I D M  +GLKPD
Sbjct: 161 FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD 220

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              YG ++  +   G   E    LD MV  GI PN   +S+       +V    K +   
Sbjct: 221 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI-------LVCAYAKQEKVE 273

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  V+  MR + ++ +++TY ++I   CK G +  +    ++++ +G  PD   +++++
Sbjct: 274 EAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLI 333

Query: 450 TALWDRRKMRQAAELLLLELMNKCV 474
            +L    K  +A E L LE++++ +
Sbjct: 334 HSLCIFDKWEKAEE-LFLEMLDRGI 357



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 161/347 (46%), Gaps = 28/347 (8%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V   M + G  P   +Y +++       Q K A  F + MR  G++P V + N L+ 
Sbjct: 135 AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 194

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCKN G    A KIF  M  RG  PD  TYGTL+ G    G + E   L   M      
Sbjct: 195 YLCKN-GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    ++ L+    + + VEEAM +F +MR +G+ PN  TY +++D LCK G    AM  
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  RP+ + Y++L++ LC   K ++A E+   M  +G+      +  II   C 
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCK 373

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT-----------------------WSLHIRIHNTVV 380
            G+  E+    D MV  G+ P+ +T                       W+  +   N + 
Sbjct: 374 EGRVIESGKLFDLMVRIGVKPDIITLGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 433

Query: 381 QGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           QGL +       Q++LSM +   +VDS   + ++    ++G+I ++ 
Sbjct: 434 QGLLE----ELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAG 476



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 18/232 (7%)

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR--PNIVTYS 300
           E+A  +F+E+  +G+ P+VF+Y+ L++GLC    S +A+ELL +M        P++V+YS
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           T++NG  KEG L       D+M  Q + P+   Y  II+  C      +A   L  MV  
Sbjct: 93  TVINGFFKEGDL-------DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           G+ P+ +T+       N++V G C +  P  A      MR+  +  D +TY+SL+   CK
Sbjct: 146 GVMPDCMTY-------NSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            G   ++ +I D +   G  PD  T+  ++     +  + +   LL L + N
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRN 250



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 143/314 (45%), Gaps = 15/314 (4%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRGYGRVHR 100
           ++G   D  T++ ++  L    +   A  + D + K   K DIT   + ++ +GY     
Sbjct: 179 SDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT--TYGTLLQGYATKGA 236

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            ++   + D M   G  P    +  ++    ++ +++ A   +  MR+ G+ P   +   
Sbjct: 237 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I  LCK SG ++ A   F +M + G  PDS  Y +LI+ LC   K  +A+ELF EM  +
Sbjct: 297 VIDVLCK-SGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDR 355

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
               + + + S+I+  C+   V E+ +LF+ M   GV+P++ T           G + +A
Sbjct: 356 GICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITL----------GRNDEA 405

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +L     S    PN  TY  +   +  +G L+E  ++   M+  G   D+G+   I+  
Sbjct: 406 KDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRE 465

Query: 341 FCDIGKYQEAANFL 354
               G+   A  +L
Sbjct: 466 LLQRGEITRAGTYL 479



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 145/330 (43%), Gaps = 29/330 (8%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS T     G + D +T+  ++    +         LLD + +        +F  +  
Sbjct: 208 IFDSMTKR---GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVC 264

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +  +AM VF KM++ G  P   +Y TV+ +L +  +++ A  ++  M + G++P
Sbjct: 265 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP 324

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
                N LI +LC      + A ++F EM +RG    +  + ++I+  C+ G++ E+ +L
Sbjct: 325 DSIVYNSLIHSLCIFD-KWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKL 383

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F  M      P ++T              +EA  LF    S G+ PN +TY  + + +  
Sbjct: 384 FDLMVRIGVKPDIITL----------GRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 433

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE----GKLQEAVEILDRMKLQGLKP 329
            G      EL Q+ +S       V  S +LN + +E    G++  A   L  +  +    
Sbjct: 434 QGLLE---ELDQLFLSMEDNGCTVD-SGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSL 489

Query: 330 DAGLYGKIISCFCDI---GKYQEAANFLDE 356
           +A       S F D+   GKYQE   FL E
Sbjct: 490 EA----STASLFIDLLSGGKYQEYHIFLPE 515



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 107/243 (44%), Gaps = 16/243 (6%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V  A++ F+    E   G R D+  ++ +I  L   +++  AE+L
Sbjct: 292 VTYGTVIDVLCKSGRVEDAMLYFEQMIDE---GLRPDSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C ++   F SI   + +  R +++ ++FD M   G +P     I  L    
Sbjct: 349 FLEMLDRGIC-LSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD----IITLGRND 403

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           E   L +AF         G+ P   +  ++ + +    G ++   ++F  M + GCT DS
Sbjct: 404 EAKDLFVAFS------SNGLVPNYWTYRLMAENII-GQGLLEELDQLFLSMEDNGCTVDS 456

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
                ++  L + G+I  A      ++ K  S    T +  I+ L   K  E  + L E+
Sbjct: 457 GMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKYQEYHIFLPEK 516

Query: 252 MRS 254
            +S
Sbjct: 517 YKS 519


>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 457

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 214/417 (51%), Gaps = 18/417 (4%)

Query: 54  SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKM 111
           ++ IS +  +NQ   AE +L  ++  K  +  DI  + ++  GY R      A  + ++M
Sbjct: 11  NITISTMCKSNQIAKAETVL--IDGIKLGLNPDIITYNTLIDGYCRFVGIDAAYNILNRM 68

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           KE G  P   SY ++ +  V +  L+ +   +  M + GI+P V S N+L+    +  G 
Sbjct: 69  KEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFR-LGK 127

Query: 172 MDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            + A  +FR++  RG   P   +Y  +INGLC+ G +  A  LF+ +  +   P V+TY 
Sbjct: 128 PEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYN 187

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           ++INGLC+++ + +A R+  E    G EPN  TY+++M    + G   Q +E+L  M  K
Sbjct: 188 AMINGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRK 247

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
               +   Y T++  L K G+++EA EI ++M   GL PD   Y  +I+ FC  G++ EA
Sbjct: 248 GFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEA 307

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
              +DE+   G+  ++ T       H  ++ GLCK       + +L  M       + + 
Sbjct: 308 LRLVDEIEKQGMKCDQYT-------HTIIIHGLCKDGNFEGAEKHLDYMNTLGFGFNLVA 360

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           ++S++ C  K GDI K+ ++ D +     + D  T+++++  L   +K R A++LL+
Sbjct: 361 FNSILDCLGKAGDIDKAVKVFDSME----VKDSFTYTSLLHNLCRAKKFRIASKLLV 413



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 24/305 (7%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD----- 82
           VN AL++F +       GF  +  T++ MI+ L  A +   A     RV  E CD     
Sbjct: 164 VNNALMLFRNLRRR---GFVPEVLTYNAMINGLCKARRLADAR----RVLNEFCDFGFEP 216

Query: 83  --ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
             IT    +  C   GR+ + L+   +  +M+  G      +Y TV+A LV+  +++ A 
Sbjct: 217 NAITYTTVMKCCFRCGRLEQGLE---ILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEAD 273

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
                M   G+ P +AS N +I   C+  G  D A ++  E+  +G   D YT+  +I+G
Sbjct: 274 EIAEKMMSNGLVPDLASYNTMINLFCR-QGRFDEALRLVDEIEKQGMKCDQYTHTIIIHG 332

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC+ G    A++    M T      +V + S+++ L ++  +++A+++F+ M  K    +
Sbjct: 333 LCKDGNFEGAEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVFDSMEVK----D 388

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
            FTY+SL+  LC+      A +LL   I    +    T   +++GL   G + EA ++  
Sbjct: 389 SFTYTSLLHNLCRAKKFRIASKLLVASIEDGFQILRATQRAVIDGLTTSGLVYEARKV-- 446

Query: 321 RMKLQ 325
           ++K+Q
Sbjct: 447 KLKIQ 451


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 172/321 (53%), Gaps = 9/321 (2%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           MRE G      + NVLI  LC+ SG ++ AF   ++M + G  PD +TYG LINGLC+  
Sbjct: 248 MRERGCGLNTVTYNVLIAGLCR-SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 306

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +  EAK L  EM      P VV Y +LI+G  +  + +EA ++ +EM + GV+PN  TY 
Sbjct: 307 RSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYD 366

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+ GLCK G   +A  LL+ M+   HRP+ +TY+ ++ G  +    ++A  +L  M+  
Sbjct: 367 NLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENA 426

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G+ P+   Y  +I   C  G+ ++A++ L+EM   G+ PN   ++        ++ G C+
Sbjct: 427 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYA-------PLISGYCR 479

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             + + A +++  M   ++  D   Y+SLI    K G + +S +   ++   G LP+E T
Sbjct: 480 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 539

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S ++        +  A +L+
Sbjct: 540 YSGLIHGYLKNGDLESAEQLV 560



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 207/452 (45%), Gaps = 64/452 (14%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           S    Y +V     A +V  +M+E GC     +Y  ++A L     ++ AF F + M + 
Sbjct: 227 SALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDY 286

Query: 150 GIQPCVASLNVLIKALCKN----------------------------------SGTMDAA 175
           G+ P   +   LI  LCK+                                   G  D A
Sbjct: 287 GLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEA 346

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           FK+ +EM   G  P+  TY  L+ GLC++G++  A  L K+M   +  P  +TY  +I G
Sbjct: 347 FKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEG 406

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
             +  S ++A RL  EM + G+ PNV+TYS ++ GLC+ G   +A +LL+ M +K  +PN
Sbjct: 407 HFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPN 466

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
              Y+ L++G C+EG +  A EI D+M    + PD   Y  +I     +G+ +E+  +  
Sbjct: 467 AFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFA 526

Query: 356 EMVLGGITPNRLTWS--LHIRIHN-------TVVQGLCKTD--PNRAFQVYL-------- 396
           +M   G+ PN  T+S  +H  + N        +VQ +  T   PN    + L        
Sbjct: 527 QMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSD 586

Query: 397 ----------SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
                     SM ++ + +D+  Y  LI      G++  + R++  +  +G +PD   +S
Sbjct: 587 DIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYS 646

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           ++++ L  +   R+ A  +L E+  K V+  +
Sbjct: 647 SLISGLC-KTADREKAFGILDEMSKKGVDPNI 677



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 194/425 (45%), Gaps = 45/425 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T+S+MI  L  + +   A DLL+ +  +       ++  +  GY R      A
Sbjct: 427 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 486

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +FDKM +    P    Y +++  L +  +++ + +++  M+E G+ P   + + LI  
Sbjct: 487 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 546

Query: 165 LCKNSGTMDAA--------------------------FK---------IFREMPNRGCTP 189
             KN G +++A                          FK          F+ M ++G   
Sbjct: 547 YLKN-GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVML 605

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+  YG LI+ L   G +  A  +   +E     P V  Y+SLI+GLC++   E+A  + 
Sbjct: 606 DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 665

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM  KGV+PN+  Y++L+DGLCK G  S A  +   +++K   PN VTY++L++G CK 
Sbjct: 666 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 725

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G +  A  + + M   G+ PDA +Y  + +     G  ++A   ++EM L G        
Sbjct: 726 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-------- 777

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
              I   N +V G CK        ++   +  R +  ++LT  ++I+   + G + +   
Sbjct: 778 HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHT 837

Query: 429 IVDEL 433
           I  EL
Sbjct: 838 IFVEL 842



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 141/262 (53%), Gaps = 14/262 (5%)

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           +G+ +   C++ +   AK++  EM  + C    VTY  LI GLC+S +VEEA    ++M 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             G+ P+ FTY +L++GLCK   S++A  LL  M     +PN+V Y+ L++G  +EG   
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL-- 371
           EA +++  M   G++P+   Y  ++   C +G+   A+  L +MV     P+ +T++L  
Sbjct: 345 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 404

Query: 372 --HIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
             H R H+       K D   AF++   M N  IS +  TYS +I   C+ G+  K++ +
Sbjct: 405 EGHFRHHS-------KKD---AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 454

Query: 430 VDELVLDGCLPDEGTWSAVMTA 451
           ++E+   G  P+   ++ +++ 
Sbjct: 455 LEEMTTKGLKPNAFVYAPLISG 476



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 186/447 (41%), Gaps = 62/447 (13%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T+S +I   +       AE L+ R+        + I++ +   Y +       
Sbjct: 532 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 591

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              F  M + G     + Y  ++  L     ++ AFR    + + G  P V   + LI  
Sbjct: 592 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISG 651

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +   + AF I  EM  +G  P+   Y  LI+GLC+ G I  A+ +F  +  K   P
Sbjct: 652 LCK-TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVP 710

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS------------------- 265
             VTYTSLI+G C+   +  A  L+ EM + G+ P+ F YS                   
Sbjct: 711 NCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLI 770

Query: 266 ---------------SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                          +L+DG CK G   + ++LL +++ +   PN +T   +++GL + G
Sbjct: 771 EEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAG 830

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           KL E   I   ++ +  +  A  +  +     + GK     + +D+M             
Sbjct: 831 KLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKI--PLDVVDDM------------- 875

Query: 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
             IR H       CK  + ++A  +   +  +S  +   +Y +++   C+KG + ++  +
Sbjct: 876 --IRDH-------CKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNL 926

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRR 456
           + E+   G L  + T  A++   W RR
Sbjct: 927 LKEMDKRGNL--QPTLVALLGIFWFRR 951



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 376 HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           H + ++  CK  + + A +V + MR R   ++++TY+ LI   C+ G + ++     ++ 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G +PD  T+ A++  L   R+  +A  LL
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALL 315


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 158/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM + G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A+E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY    E G    +   N+L+ +  K  G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE-GEIRLAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  +LG + E   L   M+     P V TY+ LINGLC+   +++A
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM   G+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKG
Sbjct: 346 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG +P
Sbjct: 396 DVWTGSKLLKEMQRDGYVP 414



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 198/427 (46%), Gaps = 38/427 (8%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 9   FRHTLQSYCSMIHFLCTHQMIPEAKTLIQIVVSRK-------------GKG------SAS 49

Query: 106 RVFDKMKEFGCEPTPKSYI--TVLAILVEENQLKLAFRFYR----HMREIGIQPCVASLN 159
            VF ++ E     T   Y+   ++   +E   L+ A   YR    H   +    C   L 
Sbjct: 50  AVFAEILETKGTQTSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLE 109

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            L+K            +  + E    G     Y +  L++   + G+I  A+ +F  +  
Sbjct: 110 HLMKL-----KYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITK 164

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
               P+VV++ +L+NG  +   ++E  RL   M++ GV+P+V+TYS L++GLCK      
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDD 224

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A EL   M+     PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +I 
Sbjct: 225 ANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSM 398
             C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D   A +    M
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYT-------TLIDGSCKEGDLETALEYRKRM 337

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
              +I +D + Y++LI+  C++G    + +++ E++  G  P+ GT++ ++     +  +
Sbjct: 338 IKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397

Query: 459 RQAAELL 465
              ++LL
Sbjct: 398 WTGSKLL 404



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 129/251 (51%), Gaps = 9/251 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L++   +   +  A  +F+ +   G+ P+V ++++LM+G  K G   +   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +   +P++ TYS L+NGLCKE K+ +A E+ D M   GL P+   +  +I   C  G+  
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVV 258

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A     +M+   ++P+ +T+       NT++ GLCK  D  +A  +   M  + +  D 
Sbjct: 259 LAMEIYKQMLSQSLSPDLITY-------NTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TY++LI   CK+GD+  +      ++ +    D+  ++A+++ L    +    AE +L 
Sbjct: 312 ITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGR-SVDAEKMLR 370

Query: 468 ELMNKCVEAEV 478
           E+++  ++ E+
Sbjct: 371 EMLSVGLKPEI 381


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 202/377 (53%), Gaps = 9/377 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G + +  T++ ++    S+ +   A+ +L  + ++K +     + S+  G  +  R  +
Sbjct: 250 SGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++F++M + G  P+   Y T++     +  L +A  +   M + GI P +++ N LI 
Sbjct: 310 ASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIH 369

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL     T D A  + +E+  +G +PD+ TY  LING CR     +A  L  EM      
Sbjct: 370 ALFMEQRT-DEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIK 428

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PT  TYTSL++ L +   ++EA  LF+++ S+GV P+V  +++L+DG C       A EL
Sbjct: 429 PTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFEL 488

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ M   +  P+ VT++T++ G C+EGK++EA E+ D MK +G+KPD   +  +IS +  
Sbjct: 489 LKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSR 548

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G  ++A    +EM+  G  P  LT+       N +VQGLCK  + + A ++   M ++ 
Sbjct: 549 RGDIKDAFRVRNEMLDTGFNPTVLTY-------NALVQGLCKNQEGDLAEELLKEMVSKG 601

Query: 403 ISVDSLTYSSLITCFCK 419
           ++ D  TY +LI    K
Sbjct: 602 MTPDDTTYFTLIEGIAK 618



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 206/422 (48%), Gaps = 13/422 (3%)

Query: 36  DSATAEYANGFR----HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91
           ++A   YA  FR        TF++MI+ L    + + A+D +  +           + +I
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 92  CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151
             GY    R   A  +   MK    EP   +Y ++++ + ++ +L+ A + +  M + G+
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P     N LI   C N G +D A     EM  +G +P   TY +LI+ L    +  EA+
Sbjct: 323 RPSAVIYNTLIDGFC-NKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
            + KE++ K  SP  +TY  LING C+  + ++A  L +EM + G++P   TY+SL+  L
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
            K     +A +L + + S+   P+++ ++ L++G C    ++ A E+L  M    + PD 
Sbjct: 442 SKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE 501

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNR 390
             +  I+   C  GK +EA    DEM   GI P+ +++       NT++ G  +  D   
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISF-------NTLISGYSRRGDIKD 554

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           AF+V   M +   +   LTY++L+   CK  +   +  ++ E+V  G  PD+ T+  ++ 
Sbjct: 555 AFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIE 614

Query: 451 AL 452
            +
Sbjct: 615 GI 616



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 195/393 (49%), Gaps = 30/393 (7%)

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           ++R  +A   F  MKE G  PT ++  ++L++ ++ N+ + A+  Y  M  + I+  V +
Sbjct: 164 MNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYT 223

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N++I  LCK  G +  A      M   G  P+  TY T+++G C  G++  A  +   M
Sbjct: 224 FNIMINVLCK-EGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           + +   P   TY SLI+G+C+   +EEA ++FEEM  KG+ P+   Y++L+DG C  G  
Sbjct: 283 KRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNL 342

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A      M+ K   P + TY++L++ L  E +  EA  ++  ++ +G+ PDA  Y  +
Sbjct: 343 DMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS--LHIR--------------------- 374
           I+ +C     ++A    DEM+  GI P + T++  LH+                      
Sbjct: 403 INGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462

Query: 375 -----IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                + N ++ G C  ++   AF++   M    +  D +T+++++   C++G + ++  
Sbjct: 463 LPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARE 522

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           + DE+   G  PD  +++ +++    R  ++ A
Sbjct: 523 LFDEMKRRGIKPDHISFNTLISGYSRRGDIKDA 555



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 171/333 (51%), Gaps = 9/333 (2%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N+   AF  +  M+E G+ P + + N L+    K + T +AA+ ++ EM         YT
Sbjct: 165 NRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRT-EAAWVLYAEMFRLRIKSSVYT 223

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           +  +IN LC+ GK+ +AK+    MET    P +VTY ++++G C S  VE A  +   M+
Sbjct: 224 FNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMK 283

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            + +EP+ FTY SL+ G+CK G   +A ++ + M+ K  RP+ V Y+TL++G C +G L 
Sbjct: 284 RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD 343

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            A    D M  +G+ P    Y  +I       +  EA   + E+   GI+P+ +T+    
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITY---- 399

Query: 374 RIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              N ++ G C+  +  +AF ++  M    I     TY+SL+    KK  + ++  +  +
Sbjct: 400 ---NILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKK 456

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  +G LPD   ++A++        ++ A ELL
Sbjct: 457 ITSEGVLPDVIMFNALIDGHCSNSNVKGAFELL 489



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 186/353 (52%), Gaps = 14/353 (3%)

Query: 118 PTPKSYITVLAILV---EENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMD 173
           P+PK  + +L   +     N ++  F F    R+ +G +  +   + LIK+ C +    D
Sbjct: 111 PSPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSIV-FDYLIKSCC-DMNRAD 168

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
            AF+ F  M  +G  P   T  +L++   +L +   A  L+ EM       +V T+  +I
Sbjct: 169 EAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMI 228

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           N LC+   +++A      M + GV+PN+ TY++++ G C  G    A  +L  M  ++  
Sbjct: 229 NVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIE 288

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P+  TY +L++G+CK+G+L+EA +I + M  +GL+P A +Y  +I  FC+ G    A+ +
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAY 348

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVDSLTYSS 412
            DEM+  GI+P   T+       N+++  L  +   + A  +   ++ + IS D++TY+ 
Sbjct: 349 KDEMLKKGISPTMSTY-------NSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNI 401

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           LI  +C+  +  K+  + DE++  G  P + T+++++  L  + +M++A +L 
Sbjct: 402 LINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLF 454



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 138/308 (44%), Gaps = 1/308 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R     ++ +I    +      A    D + K+    T   + S+        R  +A
Sbjct: 321 GLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEA 380

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +++E G  P   +Y  ++         K AF  +  M   GI+P   +   L+  
Sbjct: 381 ECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHV 440

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L K +  M  A  +F+++ + G  PD   +  LI+G C    +  A EL K+M+     P
Sbjct: 441 LSKKN-RMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPP 499

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT+ +++ G C+   VEEA  LF+EM+ +G++P+  ++++L+ G  + G    A  + 
Sbjct: 500 DEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVR 559

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+     P ++TY+ L+ GLCK  +   A E+L  M  +G+ PD   Y  +I     +
Sbjct: 560 NEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKV 619

Query: 345 GKYQEAAN 352
               E  N
Sbjct: 620 NIPDENKN 627



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 4/194 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           TK T   +L ++  +  + +A  +F   T+E   G   D   F+ +I    S +  + A 
Sbjct: 430 TKKTYTSLLHVLSKKNRMKEADDLFKKITSE---GVLPDVIMFNALIDGHCSNSNVKGAF 486

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           +LL  +++ K    E  F +I +G+ R  +  +A  +FD+MK  G +P   S+ T+++  
Sbjct: 487 ELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGY 546

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
                +K AFR    M + G  P V + N L++ LCKN    D A ++ +EM ++G TPD
Sbjct: 547 SRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEG-DLAEELLKEMVSKGMTPD 605

Query: 191 SYTYGTLINGLCRL 204
             TY TLI G+ ++
Sbjct: 606 DTTYFTLIEGIAKV 619



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 4/212 (1%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +  KA ++ D      A+G +    T++ ++  L   N+ + A+DL  ++  E       
Sbjct: 411 NAKKAFLLHDEM---LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVI 467

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F ++  G+        A  +   M      P   ++ T++     E +++ A   +  M
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +  GI+P   S N LI    +  G +  AF++  EM + G  P   TY  L+ GLC+  +
Sbjct: 528 KRRGIKPDHISFNTLISGYSRR-GDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQE 586

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
              A+EL KEM +K  +P   TY +LI G+ +
Sbjct: 587 GDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 211/438 (48%), Gaps = 12/438 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFLSICRGYGRVHRPLD 103
           G+RH    +  MI  L    QF     L++ + +E    ++  +F+ + R +        
Sbjct: 117 GYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKK 176

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V D+M ++GCEP    +  +L  L +   +K A   +  MR I   P +     L+ 
Sbjct: 177 AIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMR-IRFTPTLKHFTSLLY 235

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+    M+A + +  ++   G  PD   Y  L+ G    GK+ +A +L KEM  K C 
Sbjct: 236 GWCREGKLMEAKY-VLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECE 294

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+++T+LI  LC  K +EEAMR+F EM+S G   +  TY++L+ G CK G  S+  EL
Sbjct: 295 PNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYEL 354

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI + H PN +TY  ++    K+ +L+E +E+++ M+  G  PD  +Y  +I   C 
Sbjct: 355 LDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACK 414

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
           +G+ +E     +EM   G++P   T+   I IH  + Q  C  +   A + +  M  R +
Sbjct: 415 LGEIKEGVRVWNEMEATGLSPGLDTFV--IMIHGFLSQ-RCLVE---ACEFFKEMVGRGL 468

Query: 404 --SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             +    T   L+    +   +  S  +   ++  GC  +   W+  + AL+    +++A
Sbjct: 469 LSAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEA 528

Query: 462 AELLLLELMNKCVEAEVD 479
                L++M+  V  + D
Sbjct: 529 CS-YCLDMMDAGVMPQPD 545



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 185/390 (47%), Gaps = 23/390 (5%)

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+ G   + + Y  ++ IL +  Q    +     MR    Q     + V++     ++  
Sbjct: 114 KQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARM 173

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A ++  EMP  GC PD + +G L++ LC+ G + EA  LF++M  +  +PT+  +TS
Sbjct: 174 VKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRF-TPTLKHFTS 232

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+ G C+   + EA  +  ++R  G EP++  Y++L+ G    G    A +LL+ M  K 
Sbjct: 233 LLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKE 292

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN+++++TL+  LC + K++EA+ +   M+  G   DA  Y  +IS FC  GK  +  
Sbjct: 293 CEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGY 352

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
             LD M+  G  PN +T+ LHI   +       K +     ++   MR    + D   Y+
Sbjct: 353 ELLDNMIQQGHIPNPMTY-LHIMAAHEK-----KEELEECIELMEEMRKIGCTPDLNIYN 406

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL------ 465
            +I   CK G+I +  R+ +E+   G  P   T+  ++     +R + +A E        
Sbjct: 407 IVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGR 466

Query: 466 ----------LLELMNKCVEAEVDIQNQDV 485
                     L EL+N  + AE    ++DV
Sbjct: 467 GLLSAPQYGTLKELLNSLLRAEKLEMSKDV 496



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 38/316 (12%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D   ++ +++   +A +   A DLL  + +++C+     F ++ +      +  +A
Sbjct: 257 GFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEA 316

Query: 105 MRVFDKMKEFGCE-----------------------------------PTPKSYITVLAI 129
           MRVF +M+  GC                                    P P +Y+ ++A 
Sbjct: 317 MRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAA 376

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
             ++ +L+        MR+IG  P +   N++I+  CK  G +    +++ EM   G +P
Sbjct: 377 HEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACK-LGEIKEGVRVWNEMEATGLSP 435

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEEAMR 247
              T+  +I+G      + EA E FKEM  +    +P   T   L+N L +++ +E +  
Sbjct: 436 GLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKD 495

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           ++  + +KG + NV+ ++  +  L   G   +A      M+     P   T++ L+ GL 
Sbjct: 496 VWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQPDTFAKLMRGLR 555

Query: 308 KEGKLQEAVEILDRMK 323
           K    Q A EI ++++
Sbjct: 556 KLYNRQIAAEITEKVR 571



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 6/258 (2%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++Q + A+K + +A+ +F    +    G   D  T++ +IS      +     +LLD + 
Sbjct: 303 LIQALCAKKKMEEAMRVFFEMQS---CGCPADAVTYTTLISGFCKWGKISKGYELLDNMI 359

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           ++        +L I   + +     + + + ++M++ GC P    Y  V+ +  +  ++K
Sbjct: 360 QQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIK 419

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYG 195
              R +  M   G+ P + +  ++I         ++A  + F+EM  RG    P   T  
Sbjct: 420 EGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEAC-EFFKEMVGRGLLSAPQYGTLK 478

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
            L+N L R  K+  +K+++  + TK C   V  +T  I+ L  +  V+EA     +M   
Sbjct: 479 ELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDA 538

Query: 256 GVEPNVFTYSSLMDGLCK 273
           GV P   T++ LM GL K
Sbjct: 539 GVMPQPDTFAKLMRGLRK 556


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 185/346 (53%), Gaps = 18/346 (5%)

Query: 99  HRPLDAMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +R  +A+ +   M + G  C P   SY TV+    +E  L         M +  I P V 
Sbjct: 65  NRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLD-------KMLDQRISPNVV 117

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N +I ALCK + T+D A ++   M   G  PD  TY ++++G C  G+  EA    K+
Sbjct: 118 TYNSIIAALCK-AQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKK 176

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M +    P VVTY SL++ LC++    EA ++F+ M  +G++P++ TY +L+ G    G 
Sbjct: 177 MRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGA 236

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +   LL +M+     PN   +S L+    K+ K++EA+ +  +M+ QGL P+A  YG 
Sbjct: 237 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           +I   C  G+ ++A  + ++M+  G+ P+ +       ++N+++  LC  D   +A +++
Sbjct: 297 VIDVLCKSGRVEDAMLYFEQMIDEGLRPDSI-------VYNSLIHSLCIFDKWEKAEELF 349

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           L M +R I + ++ ++S+I   CK+G + +S ++ D +V  G  PD
Sbjct: 350 LEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 174/325 (53%), Gaps = 19/325 (5%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEA 210
           P V S N+L+  LC  + + + A ++   M + G  C PD  +Y T+ING  + G +   
Sbjct: 49  PDVFSYNILLNGLCDENRSQE-ALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL--- 104

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
                +M  +  SP VVTY S+I  LC++++V++AM +   M   GV P+  TY+S++ G
Sbjct: 105 ----DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 160

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
            C  G   +A+  L+ M S    P++VTY++L++ LCK G+  EA +I D M  +GLKPD
Sbjct: 161 FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD 220

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              YG ++  +   G   E    LD MV  GI PN   +S+       +V    K +   
Sbjct: 221 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI-------LVCAYAKQEKVE 273

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  V+  MR + ++ +++TY ++I   CK G +  +    ++++ +G  PD   +++++
Sbjct: 274 EAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLI 333

Query: 450 TALWDRRKMRQAAELLLLELMNKCV 474
            +L    K  +A E L LE++++ +
Sbjct: 334 HSLCIFDKWEKAEE-LFLEMLDRGI 357



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 131/265 (49%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V   M + G  P   +Y +++       Q K A  F + MR  G++P V + N L+ 
Sbjct: 135 AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 194

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCKN G    A KIF  M  RG  PD  TYGTL+ G    G + E   L   M      
Sbjct: 195 YLCKN-GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    ++ L+    + + VEEAM +F +MR +G+ PN  TY +++D LCK G    AM  
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  RP+ + Y++L++ LC   K ++A E+   M  +G+      +  II   C 
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCK 373

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G+  E+    D MV  G+ P+ +T
Sbjct: 374 EGRVIESGKLFDLMVRIGVKPDIIT 398



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 135/256 (52%), Gaps = 18/256 (7%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE--PNVFTYSS 266
           +A+ +F E+  +   P V +Y  L+NGLC     +EA+ L   M   G +  P+V +YS+
Sbjct: 35  DARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYST 93

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           +++G  K G        L  M+ +R  PN+VTY++++  LCK   + +A+E+L  M   G
Sbjct: 94  VINGFFKEGD-------LDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSG 146

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           + PD   Y  I+  FC  G+ +EA  FL +M   G+ P+ +T+       N+++  LCK 
Sbjct: 147 VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTY-------NSLMDYLCKN 199

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                A +++ SM  R +  D  TY +L+  +  KG + +   ++D +V +G  P+   +
Sbjct: 200 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259

Query: 446 SAVMTALWDRRKMRQA 461
           S ++ A   + K+ +A
Sbjct: 260 SILVCAYAKQEKVEEA 275



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 184/416 (44%), Gaps = 35/416 (8%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRGYGRVHR 100
           ++G   D  T++ ++  L    +   A  + D + K   K DIT   + ++ +GY     
Sbjct: 179 SDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT--TYGTLLQGYATKGA 236

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            ++   + D M   G  P    +  ++    ++ +++ A   +  MR+ G+ P   +   
Sbjct: 237 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I  LCK SG ++ A   F +M + G  PDS  Y +LI+ LC   K  +A+ELF EM  +
Sbjct: 297 VIDVLCK-SGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDR 355

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
               + + + S+I+  C+   V E+ +LF+ M   GV+P++ T    +    +       
Sbjct: 356 GICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVN 415

Query: 281 MELLQMMISKRHR---------------------PNIVTYSTLLNGLCKEGKLQEAVEIL 319
           +  +   +S                         P + TY+ +L+GLCK     +A+ + 
Sbjct: 416 IYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMF 475

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
             + L  LK +A  +  +I     +G+  EA +        G+ PN   W+  +   N +
Sbjct: 476 QNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNY--WTYRLMAENII 533

Query: 380 VQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA---RIVDE 432
            QGL +       Q++LSM +   +VDS   + ++    ++G+I ++     ++DE
Sbjct: 534 GQGLLE----ELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDE 585



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 18/232 (7%)

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR--PNIVTYS 300
           E+A  +F+E+  +G+ P+VF+Y+ L++GLC    S +A+ELL +M        P++V+YS
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           T++NG  KEG        LD+M  Q + P+   Y  II+  C      +A   L  MV  
Sbjct: 93  TVINGFFKEGD-------LDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           G+ P+ +T+       N++V G C +  P  A      MR+  +  D +TY+SL+   CK
Sbjct: 146 GVMPDCMTY-------NSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            G   ++ +I D +   G  PD  T+  ++     +  + +   LL L + N
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRN 250



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 141/324 (43%), Gaps = 28/324 (8%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+ ++     V  A++ F+    E   G R D+  ++ +I  L   +++  AE+L
Sbjct: 292 VTYGTVIDVLCKSGRVEDAMLYFEQMIDE---GLRPDSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 73  -LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
            L+ +++  C ++   F SI   + +  R +++ ++FD M   G +P   +    L    
Sbjct: 349 FLEMLDRGIC-LSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSAR 407

Query: 132 EENQLKLAFRF-YRHMREIGIQ--------------------PCVASLNVLIKALCKNSG 170
            +  L +   F + +M   G +                    P + + N+++  LCKN  
Sbjct: 408 RDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKL 467

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T D A ++F+ +       ++ T+  +I+ L ++G+  EAK+LF    +    P   TY 
Sbjct: 468 T-DDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR 526

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            +   +     +EE  +LF  M   G   +    + ++  L + G  ++A   L  MI +
Sbjct: 527 LMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS-MIDE 585

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQE 314
           +H     + ++L   L   GK QE
Sbjct: 586 KHFSLEASTASLFIDLLSGGKYQE 609



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 84/173 (48%), Gaps = 19/173 (10%)

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV--LGGITPNRLTWS 370
           ++A  + D +  +G+ PD   Y  +++  CD  + QEA   L  M    G   P+ +++S
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                  TV+ G  K  D ++       M ++ IS + +TY+S+I   CK   + K+  +
Sbjct: 93  -------TVINGFFKEGDLDK-------MLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 138

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +  +V  G +PD  T+++++       + ++A  + L ++ +  VE +V   N
Sbjct: 139 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI-VFLKKMRSDGVEPDVVTYN 190


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 102/265 (38%), Positives = 154/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M   G+QP V + +VLI 
Sbjct: 155 AQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A K+F EM +RG  P+  T+ TLI+G C+ GK+  A E++K+M ++  S
Sbjct: 215 GLCKES-KMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  +TY +LI GLC+   + +A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V+Y+ L++GLCKEG+  +A ++L  M   GLKPD G Y  ++  FC 
Sbjct: 334 RKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G  +  +  L EM   G  P  +T
Sbjct: 394 NGDVKMGSKLLKEMQRDGHVPCVIT 418



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY+ + E      +   N+L+   CK  G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWSFYKEILECRYPASLYFFNILMDRFCKE-GEIRLAQSVFDGITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  +LG + E   L   M      P V TY+ LINGLC+   ++EA
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            +LF+EM  +G+ PN  T+++L+DG CK G    AME+ + M+S+   P+ +TY+TL+ G
Sbjct: 226 HKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L +A ++ D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  +
Sbjct: 286 LCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            ++++        ++ GLCK     D  +  +  LS+    +  D+ TY+ ++  FCK G
Sbjct: 346 DVSYT-------ALISGLCKEGRSVDAEKMLREMLSV---GLKPDTGTYTIVMHEFCKNG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG +P
Sbjct: 396 DVKMGSKLLKEMQRDGHVP 414



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 154/275 (56%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++  C+ G+I  A+ +F  +      P+VV++ +L+NG  +   ++E  RL   
Sbjct: 137 YFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M + GV+P+V+TYS L++GLCK     +A +L   M+ +   PN VT++TL++G CK GK
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGK 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           L  A+EI  +M  QG  PD   Y  +I   C  G   +A +  DEM + G+ P+++T++ 
Sbjct: 257 LDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYT- 315

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK  D   AF+    M   +I +D ++Y++LI+  CK+G    + +++
Sbjct: 316 ------TLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  PD GT++ VM        ++  ++LL
Sbjct: 370 REMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLL 404



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 129/262 (49%), Gaps = 10/262 (3%)

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFK-EMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           D Y +  LI      G + +A E F+   E K   P   T   ++  L + K  +     
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECFRLTRENKYWVP-FDTCRKVLEHLMKLKYFKLVWSF 123

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           ++E+       +++ ++ LMD  CK G    A  +   +     RP++V+++TL+NG  K
Sbjct: 124 YKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIK 183

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G L E   +   M   G++PD   Y  +I+  C   K  EA    DEM+  G+ PN +T
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVT 243

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           ++       T++ G CK    + A ++Y  M ++  S D +TY++LI   CKKGD+ ++ 
Sbjct: 244 FT-------TLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAK 296

Query: 428 RIVDELVLDGCLPDEGTWSAVM 449
            + DE+ + G  PD+ T++ ++
Sbjct: 297 DLXDEMSMKGLKPDKITYTTLI 318


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 179/340 (52%), Gaps = 9/340 (2%)

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           L+ LV   +L+  FRF   M   G  P +     LI+  CK  G    A +I   + + G
Sbjct: 91  LSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCK-IGKTRKATRIMEIIEDSG 149

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             PD  TY  LI+G+C  G+  +A++L  +M  + CSP+VVT+  LIN LC+   +  A+
Sbjct: 150 AVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAI 209

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            + E+M   G  PN  +Y+ L+ G CK     +A+E L  M S+   P+IVTY+TLL  L
Sbjct: 210 DVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTAL 269

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CK+GK+  AVE+L+++  +G  P    Y  +I     +GK  +AA  LDEM   G+ P+ 
Sbjct: 270 CKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDI 329

Query: 367 LTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           +T+S       ++V GL +    + A + +  +    +  +++TY++++   CK     +
Sbjct: 330 ITYS-------SLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDR 382

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +   +  +V  GC P E +++ ++  L      ++A ELL
Sbjct: 383 AIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELL 422



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 164/296 (55%), Gaps = 3/296 (1%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           S+ RG+ ++ +   A R+ + +++ G  P   +Y  +++ +    +   A +    M   
Sbjct: 124 SLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRR 183

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P V + N+LI  LC+  G +  A  +  +MP  GCTP+S +Y  L++G C+  K+  
Sbjct: 184 GCSPSVVTFNILINFLCRK-GLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMER 242

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A E   +M ++ C P +VTY +L+  LC+   V+ A+ L  ++ SKG  P + TY++++D
Sbjct: 243 AIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVID 302

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GL K G + QA +LL  M +K  +P+I+TYS+L+ GL +EGK+ EA++    +++ G+KP
Sbjct: 303 GLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKP 362

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           +A  Y  I+   C   K   A +FL  MV  G  P   +++  I I     +GL K
Sbjct: 363 NAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYT--ILIEGLAYEGLAK 416



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 164/310 (52%), Gaps = 8/310 (2%)

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G ++  F+    M  RG  PD     +LI G C++GK  +A  + + +E     P V+T
Sbjct: 97  NGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVIT 156

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  LI+G+C +    +A +L  +M  +G  P+V T++ L++ LC+ G   +A+++L+ M 
Sbjct: 157 YNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMP 216

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                PN ++Y+ LL+G CKE K++ A+E L +M  +G  PD   Y  +++  C  GK  
Sbjct: 217 KHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVD 276

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A   L+++   G +P  +T+       NTV+ GL K    ++A ++   MR + +  D 
Sbjct: 277 AAVELLNQLSSKGCSPVLITY-------NTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDI 329

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TYSSL+    ++G + ++ +   +L + G  P+  T++A+M  L   RK  +A + L  
Sbjct: 330 ITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAY 389

Query: 468 ELMNKCVEAE 477
            +   C   E
Sbjct: 390 MVQRGCKPTE 399



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 153/293 (52%), Gaps = 4/293 (1%)

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           IT ++ +S   G     R +DA ++   M   GC P+  ++  ++  L  +  L  A   
Sbjct: 155 ITYNVLIS---GMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDV 211

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
              M + G  P   S N L+   CK    M+ A +   +M +RGC PD  TY TL+  LC
Sbjct: 212 LEKMPKHGCTPNSLSYNPLLHGFCKEK-KMERAIEYLGKMTSRGCYPDIVTYNTLLTALC 270

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           + GK+  A EL  ++ +K CSP ++TY ++I+GL +    ++A +L +EMR+KG++P++ 
Sbjct: 271 KDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDII 330

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TYSSL+ GL + G   +A++    +     +PN +TY+ ++ GLCK  K   A++ L  M
Sbjct: 331 TYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYM 390

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
             +G KP    Y  +I      G  +EA   L+E+ L G+        + +R+
Sbjct: 391 VQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKSSAEKVAVRM 443



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 146/276 (52%), Gaps = 36/276 (13%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+++I+ L        A D+L+++ K                                 
Sbjct: 191 TFNILINFLCRKGLLGRAIDVLEKMPKH-------------------------------- 218

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC P   SY  +L    +E +++ A  +   M   G  P + + N L+ ALCK+ G 
Sbjct: 219 ---GCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKD-GK 274

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +DAA ++  ++ ++GC+P   TY T+I+GL ++GK  +A +L  EM  K   P ++TY+S
Sbjct: 275 VDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSS 334

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L+ GL +   V+EA++ F ++   GV+PN  TY+++M GLCK   + +A++ L  M+ + 
Sbjct: 335 LVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRG 394

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
            +P   +Y+ L+ GL  EG  +EA+E+L+ + L+G+
Sbjct: 395 CKPTEASYTILIEGLAYEGLAKEALELLNELCLRGV 430



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 4/193 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           EK + +A+      T+    G   D  T++ +++ L    +   A +LL++++ + C   
Sbjct: 237 EKKMERAIEYLGKMTSR---GCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPV 293

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +V +   A ++ D+M+  G +P   +Y +++  L  E ++  A +F+ 
Sbjct: 294 LITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFH 353

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            +  +G++P   + N ++  LCK   T D A      M  RGC P   +Y  LI GL   
Sbjct: 354 DLEVLGVKPNAITYNAIMLGLCKARKT-DRAIDFLAYMVQRGCKPTEASYTILIEGLAYE 412

Query: 205 GKIYEAKELFKEM 217
           G   EA EL  E+
Sbjct: 413 GLAKEALELLNEL 425


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 204/430 (47%), Gaps = 37/430 (8%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRV--------------------NKEKCDITE 85
           FRH   ++  MI  L +   F  A+ L+  V                      ++ DI  
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASXVFAAILETKGTQRSDIY- 73

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +F  +   Y       DA+  +   +E        +   VL  L++    KL + FY  
Sbjct: 74  -VFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEE 132

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           + E G    +   N+L+   CK+ G +  A  +F  +   G  P   +  TL+NG  RLG
Sbjct: 133 ILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLG 191

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + E   L   M      P V TY+ LINGLC+   +++A   F+EM  KG+ PN  T++
Sbjct: 192 DLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFT 251

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG CK G    A E+ + M+S+   P+++TY+TL+ GLCK+G L++A +++D M ++
Sbjct: 252 TLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMK 311

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GLKPD   Y  +I   C  G    A      M+   I  + +       ++  ++ GLC+
Sbjct: 312 GLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDV-------VYTALISGLCQ 364

Query: 386 ----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
                D  +  +  LS+R   +  D+ TY+ +I  FCKKGD+ K ++++ E+  DG  P 
Sbjct: 365 EGRSVDAEKMLREMLSVR---LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPS 421

Query: 442 EGTWSAVMTA 451
             T++ +M  
Sbjct: 422 VVTYNVLMNG 431


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 171/319 (53%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY+ + E G    +   N+L+   CK  G +  A  +F  +   
Sbjct: 99  VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKE-GEIRVARSVFDAITKW 157

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  RLG + E   L   M      P V TY+ LINGLC+   ++ A
Sbjct: 158 GLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGA 217

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+    +++TY+TL+ G
Sbjct: 218 NELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYG 277

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M+++GLKPD   Y  +I   C  G  + A      M+   I  +
Sbjct: 278 LCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD 337

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            +       ++ T++ GLC+     D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 338 DV-------VYTTLISGLCQEGRSVDAEKMLREMLSV---GLKPDTGTYTMIINEFCKKG 387

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG +P
Sbjct: 388 DVWTGSKLLKEMQRDGHVP 406



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 157/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   +    L   FR    M   G++P V + +VLI 
Sbjct: 147 ARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLIN 206

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  +D A ++F EM ++G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 207 GLCKES-KIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 265

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             ++TY +LI GLC+   +++A  L +EMR KG++P+  TY++L+DG CK G    A E 
Sbjct: 266 ADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEH 325

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+TL++GLC+EG+  +A ++L  M   GLKPD G Y  II+ FC 
Sbjct: 326 RKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 385

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 386 KGDVWTGSKLLKEMQRDGHVPSVVT 410



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 204/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 1   FRHTLYSYCTMIHFLCTHQMLPEAKSLIQVVVSRK-------------GKG------SAS 41

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 42  AVFAAILE--TKGTLRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCKKV 99

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  ++E+   G     Y +  L++  C+ G+I  A+ +F  +
Sbjct: 100 LEHLMKL-----KYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAI 154

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV++ +L+NG  +   ++E  RL   M + GVEP+V+TYS L++GLCK    
Sbjct: 155 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKI 214

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L  D   Y  +
Sbjct: 215 DGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTL 274

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A N +DEM + G+ P+++T++       T++ G CK  D   AF+   
Sbjct: 275 IYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYT-------TLIDGCCKEGDLETAFEHRK 327

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD GT++ ++     + 
Sbjct: 328 RMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKG 387

Query: 457 KMRQAAELL 465
            +   ++LL
Sbjct: 388 DVWTGSKLL 396


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 199/382 (52%), Gaps = 19/382 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G  HD  +F+ +I       +   A   L ++ K   + +   F S+  G+  V+R  +A
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M + D++   G EP    Y T++  L E+ Q+  A    +HM+++GI+P V + N LI  
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITR 228

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L  +SGT   + +I  +M   G +PD  T+  LI+   + G++ EAK+ + EM  ++ +P
Sbjct: 229 LF-HSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNP 287

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VTY SLINGLC    ++EA ++   + SKG  PN  TY++L++G CK       M++L
Sbjct: 288 NIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKIL 347

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +M       +  TY+TL  G C+ GK   A ++L RM   G+ PD   +  ++   CD 
Sbjct: 348 CVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDH 407

Query: 345 GKYQEAANFLDEM-----VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
           GK  +A   L+++     V+G IT            +N +++GLCK D    A+ ++ S+
Sbjct: 408 GKIGKALVRLEDLQKSKTVVGIIT------------YNIIIKGLCKADKVEDAWYLFCSL 455

Query: 399 RNRSISVDSLTYSSLITCFCKK 420
             + +S D +TY +++    +K
Sbjct: 456 ALKGVSPDVITYITMMIGLRRK 477



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 197/415 (47%), Gaps = 13/415 (3%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDK 110
           FS ++  +   N++     L   +  E   I+ D+  F ++   + R  R   A+    K
Sbjct: 82  FSRLLIAIAKLNKYEAVISLFRHL--EMLGISHDLYSFTTLIDCFCRCARLSLALSCLGK 139

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M + G EP+  ++ +++      N+   A      +  +G +P V   N +I +LC+  G
Sbjct: 140 MMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEK-G 198

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++ A  + + M   G  PD  TY +LI  L   G    +  +  +M     SP V+T++
Sbjct: 199 QVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFS 258

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LI+   +   + EA + + EM  + V PN+ TY+SL++GLC  G   +A ++L +++SK
Sbjct: 259 ALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSK 318

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN VTY+TL+NG CK  ++ + ++IL  M   G+  D   Y  +   +C  GK+  A
Sbjct: 319 GFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAA 378

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
              L  MV  G+ P+  T+       N ++ GLC      +A      ++     V  +T
Sbjct: 379 EKVLGRMVSCGVHPDMYTF-------NILLDGLCDHGKIGKALVRLEDLQKSKTVVGIIT 431

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+ +I   CK   +  +  +   L L G  PD  T+  +M  L  +R  R+A EL
Sbjct: 432 YNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHEL 486



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 174/360 (48%), Gaps = 9/360 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F  M E    P+   +  +L  + + N+ +     +RH+  +GI   + S   LI
Sbjct: 62  DALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLI 121

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +  A     +M   G  P   T+G+L+NG C + + YEA  L  ++     
Sbjct: 122 DCFCR-CARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGY 180

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y ++I+ LC+   V  A+ + + M+  G+ P+V TY+SL+  L   G    +  
Sbjct: 181 EPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSAR 240

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +L  M+     P+++T+S L++   KEG+L EA +  + M  + + P+   Y  +I+  C
Sbjct: 241 ILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLC 300

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
             G   EA   L+ +V  G  PN +T+       NT++ G CK    +   ++   M   
Sbjct: 301 IHGLLDEAKKVLNVLVSKGFFPNAVTY-------NTLINGYCKAKRVDDGMKILCVMSRD 353

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D+ TY++L   +C+ G    + +++  +V  G  PD  T++ ++  L D  K+ +A
Sbjct: 354 GVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKA 413



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 154/298 (51%), Gaps = 6/298 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           +S   + A  +F +M      P    +  L+  + +L K      LF+ +E    S  + 
Sbjct: 56  HSIKFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLY 115

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           ++T+LI+  C+   +  A+    +M   G EP++ T+ SL++G C      +AM L+  +
Sbjct: 116 SFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQI 175

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           +   + PN+V Y+T+++ LC++G++  A+++L  MK  G++PD   Y  +I+     G +
Sbjct: 176 VGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTW 235

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDS 407
             +A  L +M+  GI+P+ +T+S  I ++    Q L       A + Y  M  RS++ + 
Sbjct: 236 GVSARILSDMMRMGISPDVITFSALIDVYGKEGQLL------EAKKQYNEMIQRSVNPNI 289

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY+SLI   C  G + ++ ++++ LV  G  P+  T++ ++      +++    ++L
Sbjct: 290 VTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKIL 347



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 6/288 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G R D  T++ +I++L  +  +  +  +L   +  +  I+ D+  F ++   YG+  + L
Sbjct: 214 GIRPDVVTYNSLITRLFHSGTWGVSARILS--DMMRMGISPDVITFSALIDVYGKEGQLL 271

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A + +++M +    P   +Y +++  L     L  A +    +   G  P   + N LI
Sbjct: 272 EAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLI 331

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK +  +D   KI   M   G   D++TY TL  G C+ GK   A+++   M +   
Sbjct: 332 NGYCK-AKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGV 390

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P + T+  L++GLC    + +A+   E+++       + TY+ ++ GLCK      A  
Sbjct: 391 HPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWY 450

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKP 329
           L   +  K   P+++TY T++ GL ++   +EA E+  +M K  GL P
Sbjct: 451 LFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGLMP 498


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 183/373 (49%), Gaps = 10/373 (2%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-IGIQPC 154
           G++    +A+  F  M +    P+   +  +L  +V+      A    + M   +GI+P 
Sbjct: 51  GKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPD 110

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
              LNV+I +LC +   +   F +   M   G  P   T+  LINGLC  G +  A EL 
Sbjct: 111 TFILNVVINSLC-HLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELV 169

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
             +E       V TY  LINGLC+     EA+    +M  +   PNV  YS++MDGLCK 
Sbjct: 170 DHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKD 229

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G  S+A+ L   M  K  +PN+VTY+ L+ GLC  G+ +EA  +LD M   G+ PD    
Sbjct: 230 GLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSL 289

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQ 393
             ++   C  GK  +A + +  M+L G  P+  T+       N+++   C +   + A +
Sbjct: 290 NILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTY-------NSLIDRYCLQNQMDEATR 342

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           V+  M +R    D + Y+SLI  +CK  +I+K+  ++DE++  G  PD  TW+ ++    
Sbjct: 343 VFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFC 402

Query: 454 DRRKMRQAAELLL 466
              +   A EL L
Sbjct: 403 QVGRPLAAKELFL 415



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 198/422 (46%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G      TF+++I+ L        A +L+D V K         +  +  G  ++ +  +A
Sbjct: 141 GLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEA 200

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +    KM+E    P    Y TV+  L ++  +  A      M   GI+P + +   LI+ 
Sbjct: 201 VGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQG 260

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N G    A  +  EM   G  PD  +   L++ LC+ GKI +AK +   M      P
Sbjct: 261 LC-NFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVP 319

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY SLI+  C    ++EA R+FE M S+G  P++  Y+SL+ G CK    ++AM LL
Sbjct: 320 DVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLL 379

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             MI     P++VT++TL+ G C+ G+   A E+   M   G  P+      I+   C  
Sbjct: 380 DEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKS 439

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
               EA +    M        +    L+I I++ ++ G+C     N A +++  +  + +
Sbjct: 440 QLLSEALSLFHAM-------EKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGL 492

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            ++   Y+ +I  F K+G + K+  ++  +  +GC+PD  T++  +  L   R++ ++ +
Sbjct: 493 QINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIK 552

Query: 464 LL 465
            L
Sbjct: 553 YL 554



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 194/422 (45%), Gaps = 39/422 (9%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM--RVFDK 110
           F+L++  +V    +  A  L+  ++     I  D F+         H  L A    V   
Sbjct: 78  FTLLLGFIVKMKHYTTAISLVKEMHSS-LGIKPDTFILNVVINSLCHLKLVAFGFSVLGT 136

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M + G EP+  ++  ++  L  +  +  A     H+ + G +  V +  VLI  LCK  G
Sbjct: 137 MLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCK-MG 195

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
               A    R+M  R   P+   Y T+++GLC+ G + EA  L  EM  K   P +VTYT
Sbjct: 196 KTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYT 255

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LI GLC     +EA  L +EM   GV P++ + + L+D LCK G   QA  ++  MI  
Sbjct: 256 CLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILV 315

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++ TY++L++  C + ++ EA  + + M  +G  PD   Y  +I  +C I    +A
Sbjct: 316 GEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKA 375

Query: 351 ANFLDEMVLGGITPNRLTWS-----------------LHIRIHN-----------TVVQG 382
            + LDEM+  G TP+ +TW+                 L + +H             ++ G
Sbjct: 376 MHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDG 435

Query: 383 LCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LCK+   + A  ++ +M   ++ ++ + YS ++   C  G ++ +      L L  CLP 
Sbjct: 436 LCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTA------LELFSCLPA 489

Query: 442 EG 443
           +G
Sbjct: 490 KG 491



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 189/423 (44%), Gaps = 45/423 (10%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           DV +A+ + D        G+R D  T+ ++I+ L    +   A   L ++ +   +    
Sbjct: 161 DVGRAVELVDHVEK---TGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVV 217

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ ++  G  +     +A+ +  +M   G +P   +Y  ++  L    + K A      M
Sbjct: 218 VYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEM 277

Query: 147 REIGIQPCVASLNVLIKALCKNS----------------------------------GTM 172
            ++G+ P + SLN+L+  LCK                                      M
Sbjct: 278 MKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQM 337

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A ++F  M +RGC PD   Y +LI+G C++  I +A  L  EM     +P VVT+T+L
Sbjct: 338 DEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTL 397

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I G CQ      A  LF  M   G  PN+ T + ++DGLCK    S+A+ L   M     
Sbjct: 398 IGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNL 457

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
             NIV YS +L+G+C  GKL  A+E+   +  +GL+ +   Y  +I+ F   G   +A +
Sbjct: 458 DLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAED 517

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVDSLTYS 411
            L  M   G  P+  T+       N  VQGL  + +  R+ +    MR++  SVD+ T  
Sbjct: 518 LLSNMEENGCMPDSCTY-------NVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTE 570

Query: 412 SLI 414
            +I
Sbjct: 571 MII 573



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 163/337 (48%), Gaps = 43/337 (12%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTL 197
           A  F+  M ++   P V    +L+  + K       A  + +EM +  G  PD++    +
Sbjct: 59  ALNFFHTMAKMNPLPSVIDFTLLLGFIVKMK-HYTTAISLVKEMHSSLGIKPDTFILNVV 117

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           IN LC L  +     +   M      P+VVT+T LINGLC    V  A+ L + +   G 
Sbjct: 118 INSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGY 177

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
             +V TY  L++GLCK G +S+A+  L+ M  +   PN+V YST+++GLCK+G + EA+ 
Sbjct: 178 RSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALG 237

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +   M  +G+KP+   Y  +I   C+ G+++EA + LDEM+  G+ P+            
Sbjct: 238 LCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPD------------ 285

Query: 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
                               +++ +I VD L         CK+G I ++  ++  ++L G
Sbjct: 286 --------------------LQSLNILVDVL---------CKEGKIMQAKSVIGFMILVG 316

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
            +PD  T+++++     + +M +A  +  L +   C+
Sbjct: 317 EVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCL 353



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 139/269 (51%), Gaps = 12/269 (4%)

Query: 202 CRLGK---IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GV 257
           C+ GK   I EA   F  M      P+V+ +T L+  + + K    A+ L +EM S  G+
Sbjct: 48  CKSGKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGI 107

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
           +P+ F  + +++ LC     +    +L  M+     P++VT++ L+NGLC +G +  AVE
Sbjct: 108 KPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVE 167

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           ++D ++  G + D   YG +I+  C +GK  EA  +L +M           W+ ++ +++
Sbjct: 168 LVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKM-------EERNWNPNVVVYS 220

Query: 378 TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           TV+ GLCK    + A  + L M  + I  + +TY+ LI   C  G   ++  ++DE++  
Sbjct: 221 TVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKM 280

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G +PD  + + ++  L    K+ QA  ++
Sbjct: 281 GVMPDLQSLNILVDVLCKEGKIMQAKSVI 309



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMR 106
           D   ++ +I           A  LLD +   K   T D+  + ++  G+ +V RPL A  
Sbjct: 355 DIVAYTSLIHGWCKIKNINKAMHLLDEM--IKVGFTPDVVTWTTLIGGFCQVGRPLAAKE 412

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +F  M ++G  P  ++   +L  L +   L  A   +  M +  +   +   ++++  +C
Sbjct: 413 LFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMC 472

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
            ++G ++ A ++F  +P +G   + Y Y  +ING  + G + +A++L   ME   C P  
Sbjct: 473 -SAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDS 531

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            TY   + GL   + +  +++    MR KG   +  T   +++ L      ++  E L
Sbjct: 532 CTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTEMIINYLSTNQGDNELREFL 589



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 116/271 (42%), Gaps = 1/271 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I +    NQ   A  + + +    C      + S+  G+ ++     AM + 
Sbjct: 320 DVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLL 379

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M + G  P   ++ T++    +  +   A   + +M + G  P + +  +++  LCK 
Sbjct: 380 DEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCK- 438

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           S  +  A  +F  M       +   Y  +++G+C  GK+  A ELF  +  K     V  
Sbjct: 439 SQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYA 498

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT +ING  +   +++A  L   M   G  P+  TY+  + GL      +++++ L MM 
Sbjct: 499 YTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMR 558

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
            K    +  T   ++N L       E  E L
Sbjct: 559 DKGFSVDATTTEMIINYLSTNQGDNELREFL 589


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 206/479 (43%), Gaps = 64/479 (13%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F+ D    + MIS L+ A+ F  A   L R+    C      + ++  G+ +  +     
Sbjct: 38  FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCK 97

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+ + M   GC P P  + +++     E     A++    M   G  P     N+ I ++
Sbjct: 98  RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 157

Query: 166 CKNS----------------------------------------GTMDAAFKIFREMPNR 185
           C                                           G  D AF++ +EM  +
Sbjct: 158 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 217

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD+ TY  +I  LC   K+ +A  LF+EM+    +P V TYT LI+  C++  +E+A
Sbjct: 218 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQA 277

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LFEEMRS G  P V TY++L+    K     QA ++   M+    RPN VTY  L++G
Sbjct: 278 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 337

Query: 306 LCKEGKLQEAVEILDRM----------------KLQGLKPDAGLYGKIISCFCDIGKYQE 349
           LCK G + +A E+  ++                    L P+   YG ++   C   K   
Sbjct: 338 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 397

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A   LD M+  G  PN +       +++ ++ G CK    + A +V+L M          
Sbjct: 398 AHELLDAMLSSGCEPNHI-------VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 450

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           TY+SLI    K G +  + +++ +++ D C P+  T++A++  L    +  +A +LL L
Sbjct: 451 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSL 509



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 228/505 (45%), Gaps = 67/505 (13%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++V+  +     V KA ++F         G   D  T++++I     A     A+ L 
Sbjct: 225 TYSKVITFLCHATKVEKAFLLFQEMKMV---GVTPDVYTYTILIDSFCKAGLIEQAQWLF 281

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           + +    C  T   + ++   Y +  +   A  +F +M + GC P   +Y  ++  L + 
Sbjct: 282 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 341

Query: 134 NQLKLAFRFYRHMREIG------------------IQPCVASLNVLIKALCKNSGTMDAA 175
             +  AF  Y  +  IG                  + P V +   L+  LCK +  +D A
Sbjct: 342 GNISKAFEVYAKL--IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK-AHKVDHA 398

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            ++   M + GC P+   Y  LI+G C+ GKI  A+E+F +M      P+V TYTSLI+ 
Sbjct: 399 HELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDR 458

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           + +   ++ AM++  +M      PNV TY++++DGLC+ G S +A++LL +M  K   PN
Sbjct: 459 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPN 518

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +VTY+ L++GL K GK+  ++++  +M  +G  P+   Y  +I+  C  G   +A   L 
Sbjct: 519 VVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLG 578

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK----------------TDP----------- 388
           EM        +  W  +++ +   +QG  K                T P           
Sbjct: 579 EM-------KQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDC 631

Query: 389 -NRAFQVYLSMR--------NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            ++A ++ ++M           S+  D+  Y+SLI   C    + ++ R+  E+   G +
Sbjct: 632 FSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFV 691

Query: 440 PDEGTWSAVMTALWDRRKMRQAAEL 464
           P+   +  ++  L + +K  +A +L
Sbjct: 692 PELSVFVCLIKGLVEVKKWDEALQL 716



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 143/326 (43%), Gaps = 52/326 (15%)

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M   G   D +T G   + LC+ G+  +A ++ +  + K      V  T +I+GL ++  
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKL---DTVLCTHMISGLMEASY 57

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
            +EAM     MR     PNV TY +L+ G  K         ++ MM+++   PN   +++
Sbjct: 58  FDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNS 117

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPD--------------------------AGLYG 335
           L++  C E     A ++L+RM   G  P                             +YG
Sbjct: 118 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYG 177

Query: 336 KIIS---------------CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           ++++               C C +GK+ +A   + EM+  G  P+  T+S        V+
Sbjct: 178 EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYS-------KVI 230

Query: 381 QGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LC  T   +AF ++  M+   ++ D  TY+ LI  FCK G I ++  + +E+   GC 
Sbjct: 231 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 290

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           P   T++A++ A    +++ QA ++ 
Sbjct: 291 PTVVTYTALIHAYLKAKQVPQANDIF 316



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 38/242 (15%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MI  L    +   A  LL  + ++ C      + ++  G G+  +   ++ +F +M
Sbjct: 486 TYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM 545

Query: 112 KEFGCEPTPKSYITVL-----AILVEENQLKLA----------FRFYR------------ 144
              GC P   +Y  ++     A L+++ +L L            + YR            
Sbjct: 546 SRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIA 605

Query: 145 ------HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM---PNRGCTPDSYTYG 195
                  M   G  P      +LI    K +G ++ A ++ +EM   P+   T D+  Y 
Sbjct: 606 SLGILEEMESYGTVPIAPVYGMLIDCFSK-AGRLEIAMELHKEMMEVPSSVKT-DNDMYA 663

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           +LI  LC   ++ EA  L+ EM  +   P +  +  LI GL + K  +EA++L   +  +
Sbjct: 664 SLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHE 723

Query: 256 GV 257
           GV
Sbjct: 724 GV 725


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/487 (25%), Positives = 236/487 (48%), Gaps = 44/487 (9%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +  +QV  ++R++ D   AL  F  A  ++   +RHD   +  M+  L      + +  +
Sbjct: 172 LKPSQVCAVLRSQDDERVALKFFYWADRQWR--YRHDPMVYYSMLEVLSKTKLCQGSRRV 229

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L  + +     T + F  +   Y R  +  DA++V   M+  G EP      T + + V 
Sbjct: 230 LVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVR 289

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            N+L+ A RF   M+ +GI P V + N +I+  C +   ++ A ++  +M ++GC PD  
Sbjct: 290 ANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYC-DLHRVEEAIELLEDMHSKGCLPDKV 348

Query: 193 TYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           +Y T++  LC+  +I E ++L K+M +     P  VTY +LI+ L +    +EA+   ++
Sbjct: 349 SYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKD 408

Query: 252 MRSKGVE--------------------------------PNVFTYSSLMDGLCKGGCSSQ 279
            + KG                                  P+V TY+++++G C+ G   +
Sbjct: 409 AQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMDCPPDVVTYTAVVNGFCRLGEVDK 468

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A +LLQ+M +  H+PN V+Y+ LLNG+C+ GK  EA E+++  +     P++  Y  I+ 
Sbjct: 469 AKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMH 528

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSM- 398
                GK  EA + + EMVL G  P  +         N ++Q LC+       + ++   
Sbjct: 529 GLRREGKLSEACDVVREMVLKGFFPGPVEI-------NLLLQSLCRDGRTHEARKFMEEC 581

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
            N+  +++ + ++++I  FC+  ++  +  ++D++ L     D  T++ ++  L  + ++
Sbjct: 582 LNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRI 641

Query: 459 RQAAELL 465
            +A EL+
Sbjct: 642 AEATELM 648



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/433 (23%), Positives = 190/433 (43%), Gaps = 46/433 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MI      ++   A +LL+ ++ + C   +  + +I     +  R ++   +  KM
Sbjct: 314 TYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKM 373

Query: 112 -KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS- 169
            KE G  P   +Y T++ +L + +    A  F +  +E G +      + ++ ALCK   
Sbjct: 374 AKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGR 433

Query: 170 ------------------------------GTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
                                         G +D A K+ + M   G  P++ +Y  L+N
Sbjct: 434 MSEAKDLINEMDCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLN 493

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           G+CR GK  EA+E+    E    SP  +TY+ +++GL +   + EA  +  EM  KG  P
Sbjct: 494 GMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFP 553

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
                + L+  LC+ G + +A + ++  ++K    N+V ++T+++G C+  +L  A+ +L
Sbjct: 554 GPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVL 613

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
           D M L     D   Y  ++      G+  EA   + +M+  GI P  +T+        TV
Sbjct: 614 DDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTY-------RTV 666

Query: 380 VQGLC---KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           +   C   K D   A    +  R +  ++    Y+ +I   C  G + ++  ++ +++  
Sbjct: 667 IHRYCQMGKVDDLVAILEKMISRQKCRTI----YNQVIEKLCVLGKLEEADTLLGKVLRT 722

Query: 437 GCLPDEGTWSAVM 449
               D  T  A+M
Sbjct: 723 ASRSDAKTCYALM 735



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 172/427 (40%), Gaps = 80/427 (18%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
           ++T   ++ ++      ++AL     A  +   GFR D   +S ++  L    +   A+D
Sbjct: 383 QVTYNTLIHMLTKHDHADEALWFLKDAQEK---GFRIDKLGYSAIVHALCKEGRMSEAKD 439

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRV-----------------HRP------------- 101
           L   +N+  C      + ++  G+ R+                 H+P             
Sbjct: 440 L---INEMDCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMC 496

Query: 102 -----LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
                L+A  + +  +E    P   +Y  ++  L  E +L  A    R M   G  P   
Sbjct: 497 RTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPV 556

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCT---------------------------- 188
            +N+L+++LC++  T +A  K   E  N+GC                             
Sbjct: 557 EINLLLQSLCRDGRTHEAR-KFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDD 615

Query: 189 -------PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
                   D +TY TL++ L + G+I EA EL K+M  K   PT VTY ++I+  CQ   
Sbjct: 616 MYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGK 675

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V++ + + E+M S+  +     Y+ +++ LC  G   +A  LL  ++    R +  T   
Sbjct: 676 VDDLVAILEKMISR--QKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYA 733

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV-LG 360
           L+ G  K+G    A ++  RM  + L PD  +  K+       GK  EA   +  +V  G
Sbjct: 734 LMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERG 793

Query: 361 GITPNRL 367
            I+P  L
Sbjct: 794 HISPQSL 800


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 171/327 (52%), Gaps = 9/327 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY    E G    +   N+L    CK  G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKE-GDIRVAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E  +L   M      P V TY+ LINGLC+   ++ A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L +A +++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 292 LCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            + ++        ++ GLC+   +  A ++   M +  +  D+ TY+ +I   CKKGD+ 
Sbjct: 352 DVAYT-------ALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVG 404

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTA 451
           K ++++ E+  DG  P   T++ +M  
Sbjct: 405 KGSKLLKEMQXDGHAPSVVTYNVLMNG 431



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 202/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  + +   F  A+ L+  V   K             G G       A 
Sbjct: 15  FRHTLXSYCTMIHFVCTHQMFSEAKSLIQVVVSRK-------------GKG------SAS 55

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVAS 157
            VF  + E   +   +S I V + L+    E   L+ A   YR  RE    +    C   
Sbjct: 56  AVFAAILE--TKGNQRSDIYVFSGLITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKV 113

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E    G     Y +  L +  C+ G I  A+ +F  +
Sbjct: 114 LEHLMKL-----KYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAI 168

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV+Y +L+NG  +   ++E  +L   M + GV P+V+TYS L++GLCK    
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKM 228

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+ K   PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 229 DXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G   +A + +DEM + G+ P+++T++       T++ G CK  D + AF+   
Sbjct: 289 IYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYT-------TLIDGCCKEGDLDTAFEHRK 341

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  PD GT++ ++  +  + 
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKG 401

Query: 457 KMRQAAELL 465
            + + ++LL
Sbjct: 402 DVGKGSKLL 410



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 146/287 (50%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F+++  +       R A+ + D + K     +   + ++  GY R+    +  ++   M 
Sbjct: 145 FNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMH 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G  P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 205 ASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TLI GLC+ G + +A +L  EM  K   P  +TYT+L
Sbjct: 264 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  + +  +   Y++L+ GLC+ G S  A ++++ M+S   
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N +CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 384 KPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMN 430


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 227/470 (48%), Gaps = 22/470 (4%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKAL-VIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           +T+F+ +  +T   +L  + + +  +    V+F+  +     G      T + ++S LV 
Sbjct: 115 ETLFEPAVAVTVVDLLIHVYSTQFKHLGFGVVFELFSLLANKGLFPSLKTCNFLLSSLVK 174

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGYGRVHRPLDAMRVFDKMKEFGC 116
           AN+ + +  + D +    C +T D++L      + C G GRV    DA+ +F KM++ G 
Sbjct: 175 ANEVKMSYQVFDIMCH--CGVTPDVYLFSTMVNAFCTG-GRVD---DAIELFRKMEKVGV 228

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
            P   +Y  ++  L +  +L  AF+F   M +  ++P + +  VLI  L K     D A 
Sbjct: 229 APNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLE-RFDEAN 287

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
            I +EM +RG  P++  Y TLI+G CR+G I  A ++  +M +   SP  VT  SLI G 
Sbjct: 288 CILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGY 347

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+S  +E A  L EEM + G   N  T++S++  LC       A+  +  M+ +  +PN 
Sbjct: 348 CKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPND 407

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
              + L++GLC+ GK  EA+E+  R+  +G   +      +I   C+ G  +EAA  L E
Sbjct: 408 GLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKE 467

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           M+  G+  + +++       NT++   CK       F++   M  R I  D  TY+ L+ 
Sbjct: 468 MLERGLVLDSISY-------NTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLH 520

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             C  G I ++  +  E   +G  PD  T+  ++       ++ +  +L 
Sbjct: 521 GLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLF 570



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 208/436 (47%), Gaps = 12/436 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +++ AL I D   +   NG   ++ T + +I     +NQ   AE LL+ +      I + 
Sbjct: 317 NISTALQIRDDMIS---NGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQG 373

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            F S+        R   A+    +M     +P       +++ L +  +   A   +  +
Sbjct: 374 TFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRL 433

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            E G      + N LI  LC+ +G+ + A K+ +EM  RG   DS +Y TLI   C+ GK
Sbjct: 434 LEKGFAANTVTSNALIHGLCE-AGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGK 492

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + E  +L +EM  +   P + TY  L++GLC    +EEA  L+ E +  G  P+ +TY  
Sbjct: 493 VEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGI 552

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++DG CK     +  +L Q M++ +   N V Y TL+   C+ G ++EA  + D M+ +G
Sbjct: 553 MIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRG 612

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           +   +  Y  +I    +IG    A   LDEM   G++PN + ++        ++ G CK 
Sbjct: 613 IPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYT-------ALIGGYCKL 665

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              ++   +   M   ++  + +TY+ +I   CK G++  +A++++E+   G +PD  T+
Sbjct: 666 GQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTY 725

Query: 446 SAVMTALWDRRKMRQA 461
           +A+        KM +A
Sbjct: 726 NALTNGFCKEGKMEEA 741



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 224/449 (49%), Gaps = 44/449 (9%)

Query: 50  NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109
           NS FS++ +    +++   ++ LL  ++  + D     FL+I  G   V+ P  A   F 
Sbjct: 61  NSVFSILSNPSFDSSK---SKQLLLHLSPHEFD---QCFLAI--GSNNVN-PRTAFNFFH 111

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLK-----LAFRFYRHMREIGIQPCVASLNVLIKA 164
              E   EP     +  L I V   Q K     + F  +  +   G+ P + + N L+ +
Sbjct: 112 FASETLFEPAVAVTVVDLLIHVYSTQFKHLGFGVVFELFSLLANKGLFPSLKTCNFLLSS 171

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L K +  +  ++++F  M + G TPD Y + T++N  C  G++ +A ELF++ME    +P
Sbjct: 172 LVK-ANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAP 230

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY ++I+GLC++  ++EA +  E+M  + V+P++ TY  L++GL K     +A  +L
Sbjct: 231 NVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCIL 290

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  + + PN V Y+TL++G C+ G +  A++I D M   G+ P++     +I  +C  
Sbjct: 291 KEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKS 350

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIR----------------------------IH 376
            + + A + L+EM+ GG   N+ T++  I                             + 
Sbjct: 351 NQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLL 410

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             +V GLC+    + A +++  +  +  + +++T ++LI   C+ G   ++A+++ E++ 
Sbjct: 411 TLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLE 470

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            G + D  +++ ++ A     K+ +  +L
Sbjct: 471 RGLVLDSISYNTLILACCKEGKVEEGFKL 499



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 206/443 (46%), Gaps = 30/443 (6%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+ ++I+ LV   +F  A  +L  ++         ++ ++  GY R+     A+++ D M
Sbjct: 269 TYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDM 328

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P   +  +++    + NQ++ A      M   G      +   +I  LC     
Sbjct: 329 ISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKC-R 387

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D+A     EM  R   P+      L++GLC+ GK  EA EL+  +  K  +   VT  +
Sbjct: 388 FDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNA 447

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+GLC++ S EEA +L +EM  +G+  +  +Y++L+   CK G   +  +L + M+ + 
Sbjct: 448 LIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRG 507

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P++ TY+ LL+GLC  GK++EA  +    K  G  PDA  YG +I  +C   + +E  
Sbjct: 508 IQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGE 567

Query: 352 NFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVVQGL 383
               EMV   I  N + +   IR                             +++++ GL
Sbjct: 568 KLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGL 627

Query: 384 CKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
                 + A Q+   MR   +S + + Y++LI  +CK G +HK   I+ E+ ++   P++
Sbjct: 628 SNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNK 687

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T++ ++        M+ AA+LL
Sbjct: 688 ITYTIMINGHCKLGNMKAAAKLL 710



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 1/264 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+++++  L +  +   A  L     K         +  +  GY + +R  + 
Sbjct: 507 GIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEG 566

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++F +M     E     Y T++    E   ++ AFR    MR  GI    A+ + LI  
Sbjct: 567 EKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHG 626

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L  N G +D+A ++  EM   G +P+   Y  LI G C+LG++++   + +EM      P
Sbjct: 627 L-SNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHP 685

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +TYT +ING C+  +++ A +L  EM  KG+ P+  TY++L +G CK G   +A+++ 
Sbjct: 686 NKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVC 745

Query: 285 QMMISKRHRPNIVTYSTLLNGLCK 308
            +M +     + +TY+TL++G  K
Sbjct: 746 DLMSTGGISLDDITYTTLIDGWHK 769



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 1/230 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T+ +MI     AN+    E L   +   K +    ++ ++ R Y       +
Sbjct: 541 NGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMRE 600

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A R+ D M+  G   T  +Y +++  L     +  A +    MR+ G+ P V     LI 
Sbjct: 601 AFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIG 660

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G M     I +EM      P+  TY  +ING C+LG +  A +L  EM  K   
Sbjct: 661 GYCK-LGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIV 719

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           P  VTY +L NG C+   +EEA+++ + M + G+  +  TY++L+DG  K
Sbjct: 720 PDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGWHK 769


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 189/372 (50%), Gaps = 30/372 (8%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           G  P   ++  ++    +   +  AF     + ++G +P + +LN  IK  C   G +  
Sbjct: 98  GINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCL-KGQIHQ 156

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A     ++   G   D  +YGTLINGLC++G+   A +L + ++ K      V Y ++I+
Sbjct: 157 ALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVID 216

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G+ + K V +A  L+ EM +K + P+V TYS+L+ G    G    A++L   MI +  +P
Sbjct: 217 GMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKP 276

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++ T++ L++G CKEG+L++A  +LD M +Q +KP+   +  ++  FC   K +E     
Sbjct: 277 DVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVF 336

Query: 355 DEMVLGGITPNRLTW----------------------------SLHIRIHNTVVQGLCKT 386
             M+  GI PN +T+                            + ++  +N ++ G CK 
Sbjct: 337 AMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKI 396

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              ++A ++++ M ++ I  D +TY+SLI   CK G I  + ++V+E+   G  P+  T+
Sbjct: 397 KKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITY 456

Query: 446 SAVMTALWDRRK 457
           ++++ AL  + K
Sbjct: 457 NSILNALLTKLK 468



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 174/359 (48%), Gaps = 23/359 (6%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++AL   D   A    GF  D  ++  +I+ L    + R A  LL RV+ +   +   +
Sbjct: 154 IHQALNFHDKLVAL---GFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVM 210

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G  +     DA  ++ +M      P   +Y  ++       +LK A   +  M 
Sbjct: 211 YNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMI 270

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              I+P V + N+L+   CK  G +  A  +   M  +   P+  T+ TL++G C+  K+
Sbjct: 271 LENIKPDVYTFNILVDGFCK-EGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKM 329

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            E K +F  M  +   P VVTY SL++G C  K V +A ++F  M  +GV  NV +Y+ +
Sbjct: 330 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIM 389

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++G CK     +AM+L   M  K   P++VTY++L++GLCK GK+  A ++++ M  +G 
Sbjct: 390 INGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQ 449

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
            P+   Y  I++      K Q            GI PN  T ++       +++GLC++
Sbjct: 450 PPNIITYNSILNALLTKLKDQ------------GIQPNMHTDTI-------LIKGLCQS 489



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 151/279 (54%), Gaps = 15/279 (5%)

Query: 83  ITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           I+ D+  + ++ RG+  V +  DA+ +F+KM     +P   ++  ++    +E +LK A 
Sbjct: 239 ISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAK 298

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
                M    I+P V++ N L+   CK+   M     +F  M  +G  P+  TY +L++G
Sbjct: 299 NVLDMMMIQDIKPNVSTFNTLVDGFCKDR-KMKEGKTVFAMMMKQGIKPNVVTYCSLMDG 357

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C + ++ +AK++F  M  +  +  V +Y  +ING C+ K V++AM+LF EM  K + P+
Sbjct: 358 YCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPD 417

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           V TY+SL+DGLCK G  S A +L+  M  +   PNI+TY+++LN L            L 
Sbjct: 418 VVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNAL------------LT 465

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           ++K QG++P+      +I   C  GK + A    +++++
Sbjct: 466 KLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDLLV 504



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 164/339 (48%), Gaps = 44/339 (12%)

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           ++M   G  P+  T+  LIN  C+LG I  A  +  ++      P ++T  + I G C  
Sbjct: 92  QQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLK 151

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM------------- 286
             + +A+   +++ + G   +  +Y +L++GLCK G +  A++LL+              
Sbjct: 152 GQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMY 211

Query: 287 ----------------------MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
                                 M++KR  P++VTYS L+ G    GKL++A+++ ++M L
Sbjct: 212 NTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMIL 271

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           + +KPD   +  ++  FC  G+ ++A N LD M++  I PN  T+       NT+V G C
Sbjct: 272 ENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTF-------NTLVDGFC 324

Query: 385 KTDPNRAFQ-VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K    +  + V+  M  + I  + +TY SL+  +C    ++K+ +I + +   G   +  
Sbjct: 325 KDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVH 384

Query: 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +++ ++      +K+ +A + L +E+ +K +  +V   N
Sbjct: 385 SYNIMINGFCKIKKVDKAMK-LFIEMHHKHIIPDVVTYN 422



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           V+  +  +K VN A   FD  +   A     D  T+S +I       + + A DL +++ 
Sbjct: 214 VIDGMSKDKHVNDA---FDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMI 270

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
            E        F  +  G+ +  R   A  V D M     +P   ++ T++    ++ ++K
Sbjct: 271 LENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMK 330

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                +  M + GI+P V +   L+   C     ++ A KIF  M  RG T + ++Y  +
Sbjct: 331 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCL-VKQVNKAKKIFNTMSQRGVTANVHSYNIM 389

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ING C++ K+ +A +LF EM  K   P VVTY SLI+GLC+S  +  A +L  EM  +G 
Sbjct: 390 INGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQ 449

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PN+ TY+S+++             LL  +  +  +PN+ T + L+ GLC+ GKL+ A +
Sbjct: 450 PPNIITYNSILNA------------LLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARK 497

Query: 318 ILDRM 322
           + + +
Sbjct: 498 VFEDL 502



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 154/311 (49%), Gaps = 7/311 (2%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           +S  +D A  +F  + ++  T  ++ +  ++  L +    +    L ++ME +  +P  V
Sbjct: 45  HSNDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFV 104

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T+  LIN  CQ   +  A  +  ++   G EP++ T ++ + G C  G   QA+     +
Sbjct: 105 TFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKL 164

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           ++     + V+Y TL+NGLCK G+ + A+++L R+  + ++ +A +Y  +I         
Sbjct: 165 VALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHV 224

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDS 407
            +A +   EMV   I+P+ +T+S  IR     + G  K     A  ++  M   +I  D 
Sbjct: 225 NDAFDLYSEMVAKRISPDVVTYSALIR--GFFIVGKLKD----AIDLFNKMILENIKPDV 278

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            T++ L+  FCK+G + K+  ++D +++    P+  T++ ++      RKM++   +  +
Sbjct: 279 YTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAM 338

Query: 468 ELMNKCVEAEV 478
            +M + ++  V
Sbjct: 339 -MMKQGIKPNV 348



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 122/244 (50%), Gaps = 13/244 (5%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           + D  TF++++       + + A+++LD +  +        F ++  G+ +  +  +   
Sbjct: 275 KPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKT 334

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           VF  M + G +P   +Y +++       Q+  A + +  M + G+   V S N++I   C
Sbjct: 335 VFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFC 394

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K    +D A K+F EM ++   PD  TY +LI+GLC+ GKI  A +L  EM  +   P +
Sbjct: 395 K-IKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNI 453

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           +TY S++N             L  +++ +G++PN+ T + L+ GLC+ G    A ++ + 
Sbjct: 454 ITYNSILNA------------LLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFED 501

Query: 287 MISK 290
           ++ K
Sbjct: 502 LLVK 505



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 121/268 (45%), Gaps = 30/268 (11%)

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           + Y+S I+    S  V+ A+ LF  +  +      F ++ ++  L K       + L Q 
Sbjct: 35  IPYSS-ISTTFHSNDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQ 93

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M  +   PN VT++ L+N  C+ G +  A  +L ++   G +PD       I  FC  G+
Sbjct: 94  MEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQ 153

Query: 347 YQEAANFLDEMVLGGITPNRLTWS----------------------------LHIRIHNT 378
             +A NF D++V  G   +++++                             L+  ++NT
Sbjct: 154 IHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNT 213

Query: 379 VVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           V+ G+ K    N AF +Y  M  + IS D +TYS+LI  F   G +  +  + ++++L+ 
Sbjct: 214 VIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILEN 273

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD  T++ ++       ++++A  +L
Sbjct: 274 IKPDVYTFNILVDGFCKEGRLKKAKNVL 301


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 200/372 (53%), Gaps = 13/372 (3%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPLDA 104
           R +  T++ +I+   S  + + A D++ R  +E+  I  +   + ++  G+ +V R  +A
Sbjct: 516 RPNAVTYNTVIAGFCSRGRVQAALDIM-REMRERGGIAPNQYTYGTVISGWCKVGRVDEA 574

Query: 105 MRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           ++VFD+M   G  +P    Y  ++    ++ +L  A  +   M E G+   VA+ N+L+ 
Sbjct: 575 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 634

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL  + G    A+++  EM  +G  PD +TY  LING C+ G + +A E+F+ M  +   
Sbjct: 635 ALFMD-GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR 693

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            TVVTYT+LI  L +   V+E  +LF+E   +G+ P++  Y++L++     G   +A E+
Sbjct: 694 ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEI 753

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M  KR  P+ VTY+TL+ GLC  G++ EA +++D M  +G++PD   Y  +IS +  
Sbjct: 754 MGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSM 813

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G  ++A    +EM+  G  P  LT+       N ++QGLCK    + A  +   M    
Sbjct: 814 KGDVKDALRIRNEMMNKGFNPTLLTY-------NALIQGLCKNGQGDDAENMVKEMVENG 866

Query: 403 ISVDSLTYSSLI 414
           I+ D  TY SLI
Sbjct: 867 ITPDDSTYISLI 878



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 207/422 (49%), Gaps = 19/422 (4%)

Query: 38  ATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           A A +A+ FR       +TF++M+  L SA +   A +LL ++ +        +    C 
Sbjct: 472 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFC- 530

Query: 94  GYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-I 151
             GRV   LD MR   +M+E  G  P   +Y TV++   +  ++  A + +  M   G +
Sbjct: 531 SRGRVQAALDIMR---EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 587

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P     N LI   C + G +D A      M  RG      TY  L++ L   G+  EA 
Sbjct: 588 KPEAVMYNALIGGYC-DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 646

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           EL +EM  K  +P V TY  LING C+  +V++A+ +FE M  +GV   V TY++L+  L
Sbjct: 647 ELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYAL 706

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
            K G   +  +L    + +  RP++V Y+ L+N     G +  A EI+  M+ + + PD 
Sbjct: 707 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 766

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNR 390
             Y  ++   C +G+  EA   +DEM   GI P+ +T+       NT++ G   K D   
Sbjct: 767 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY-------NTLISGYSMKGDVKD 819

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A ++   M N+  +   LTY++LI   CK G    +  +V E+V +G  PD+ T+ +++ 
Sbjct: 820 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 879

Query: 451 AL 452
            L
Sbjct: 880 GL 881



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 175/323 (54%), Gaps = 10/323 (3%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEA 210
           +P   + N +I   C + G + AA  I REM  RG   P+ YTYGT+I+G C++G++ EA
Sbjct: 516 RPNAVTYNTVIAGFC-SRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 574

Query: 211 KELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            ++F EM TK    P  V Y +LI G C    ++ A+   + M  +GV   V TY+ L+ 
Sbjct: 575 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 634

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            L   G  ++A EL++ M  K   P++ TY+ L+NG CKEG +++A+EI + M  +G++ 
Sbjct: 635 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 694

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
               Y  +I      G+ QE     DE V  GI P+ + ++  I  H+T        + +
Sbjct: 695 TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHST------SGNID 748

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           RAF++   M  + I+ D +TY++L+   C  G + ++ +++DE+   G  PD  T++ ++
Sbjct: 749 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 808

Query: 450 TALWDRRKMRQAAELLLLELMNK 472
           +    +  ++ A   +  E+MNK
Sbjct: 809 SGYSMKGDVKDALR-IRNEMMNK 830



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 137/261 (52%), Gaps = 5/261 (1%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVF 108
           +T++L++  L    +   A +L++ +  +   +  D+F    +  G+ +      A+ +F
Sbjct: 627 ATYNLLVHALFMDGRGTEAYELVEEMGGKG--LAPDVFTYNILINGHCKEGNVKKALEIF 684

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M   G   T  +Y  ++  L ++ Q++   + +      GI+P +   N LI +    
Sbjct: 685 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS-HST 743

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG +D AF+I  EM  +   PD  TY TL+ GLC LG++ EA++L  EM  +   P +VT
Sbjct: 744 SGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVT 803

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI+G      V++A+R+  EM +KG  P + TY++L+ GLCK G    A  +++ M+
Sbjct: 804 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMV 863

Query: 289 SKRHRPNIVTYSTLLNGLCKE 309
                P+  TY +L+ GL  E
Sbjct: 864 ENGITPDDSTYISLIEGLTTE 884



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 126/271 (46%), Gaps = 30/271 (11%)

Query: 210 AKELFKEMET--KACSPTVV------TYTSLINGLCQSKSV----EEAMRLFEEMRSKGV 257
           A  LFK + +  KA SP  V        +SL N L  + +       ++RL+  M+S  +
Sbjct: 394 ALALFKSVLSADKALSPLAVLPHLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSL 453

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
             +  +   L+  L     S+ A  L   M   R      T++ +L  LC  GK   A+E
Sbjct: 454 PISTASLHPLLSALP----SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALE 509

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM-VLGGITPNRLTWSLHIRIH 376
           +L +M     +P+A  Y  +I+ FC  G+ Q A + + EM   GGI PN+ T+       
Sbjct: 510 LLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYG------ 559

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            TV+ G CK    + A +V+  M  +  +  +++ Y++LI  +C +G +  +    D +V
Sbjct: 560 -TVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMV 618

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G      T++ ++ AL+   +  +A EL+
Sbjct: 619 ERGVAMTVATYNLLVHALFMDGRGTEAYELV 649



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 4/192 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           +T +T   ++  +  +  V +   +FD A      G R D   ++ +I+   ++     A
Sbjct: 694 ATVVTYTALIYALSKKGQVQETDKLFDEAVRR---GIRPDLVLYNALINSHSTSGNIDRA 750

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
            +++  + K++    +  + ++ RG   + R  +A ++ D+M E G +P   +Y T+++ 
Sbjct: 751 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 810

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
              +  +K A R    M   G  P + + N LI+ LCKN G  D A  + +EM   G TP
Sbjct: 811 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN-GQGDDAENMVKEMVENGITP 869

Query: 190 DSYTYGTLINGL 201
           D  TY +LI GL
Sbjct: 870 DDSTYISLIEGL 881


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 243/496 (48%), Gaps = 51/496 (10%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL+++R  + +NKA  ++++      +G      TF+ M+     A      + +   + 
Sbjct: 245 VLRVLRDSRMMNKAQEVYETMVM---HGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMK 301

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +   + +E  +  +  G+ +  +  +A R    M+  G   TP S+  ++    ++    
Sbjct: 302 RRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFD 361

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A+     M   GI P  ++ N+ I+ALC+  G +D A    RE+ +    PD  +Y TL
Sbjct: 362 EAWGVTDEMLNAGIYPTTSTYNIYIRALCE-FGRIDDA----RELLSSMAAPDVVSYNTL 416

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++G  ++ K  EA  LF +++    +P++VTY +LI+GLC+S ++E A RL EEM S+ +
Sbjct: 417 MHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLI 476

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK--------------------------- 290
            P+V TY++L+ G  K G  S A E+   M+ K                           
Sbjct: 477 YPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFR 536

Query: 291 ---------RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
                     H P++  Y+  ++GLCK G L++A+E   ++   GL PD   Y  +I  +
Sbjct: 537 LHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGY 596

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
            + G+++ A +  DEM+   ++P+ +T+   + IH     G  +    +AFQ    M+ R
Sbjct: 597 LEKGRFKMARDLYDEMLSKRLSPSVITY--FVLIHGHAKAGRLE----QAFQYSTEMKKR 650

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  + +T+++L+   CK G+I ++ R + ++  +G  P++ +++ +++   D  K  + 
Sbjct: 651 GVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEV 710

Query: 462 AELLLLELMNKCVEAE 477
            + L  E+++K +E +
Sbjct: 711 VK-LYKEMLDKEIEPD 725



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 190/387 (49%), Gaps = 18/387 (4%)

Query: 34  IFDSA---TAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +FD A   T E  N G     ST+++ I  L    +   A +LL  +     D+    + 
Sbjct: 359 LFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSMAAP--DVVS--YN 414

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  GY ++ + ++A  +FD +K     P+  +Y T++  L E   L+ A R    M   
Sbjct: 415 TLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQ 474

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            I P V +   L+K   KN G +  A +I+ EM  +G  PD Y Y T   G  RLG   +
Sbjct: 475 LIYPDVITYTTLLKGFVKN-GNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEK 533

Query: 210 AKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           A  L +EM  +   +P +  Y   I+GLC+  ++E+A+    ++   G+ P+  TY++++
Sbjct: 534 AFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVI 593

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
            G  + G    A +L   M+SKR  P+++TY  L++G  K G+L++A +    MK +G++
Sbjct: 594 RGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVR 653

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           P+   +  ++   C  G   EA  +L +M   GI+PN+ ++++ I  H       C  D 
Sbjct: 654 PNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKH-------CDLDK 706

Query: 389 -NRAFQVYLSMRNRSISVDSLTYSSLI 414
                ++Y  M ++ I  D  T+ +L 
Sbjct: 707 WEEVVKLYKEMLDKEIEPDGYTHRALF 733



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 152/293 (51%), Gaps = 13/293 (4%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G  P V + N++++ L ++S  M+ A +++  M   G  P   T+ T+++   + G +  
Sbjct: 234 GFLPSVRNCNIVLRVL-RDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFKAGDLER 292

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
             +++ EM+ +    + VTY  LING  +S  +EEA R   +M+  G     ++++ L++
Sbjct: 293 VDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIE 352

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G CK G   +A  +   M++    P   TY+  +  LC+ G++ +A E+L  M      P
Sbjct: 353 GYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSMA----AP 408

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388
           D   Y  ++  +  + K+ EA+   D++  G I P+ +T+       NT++ GLC++ + 
Sbjct: 409 DVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTY-------NTLIDGLCESGNL 461

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
             A ++   M ++ I  D +TY++L+  F K G++  +  I DE++  G  PD
Sbjct: 462 EGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPD 514



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 128/294 (43%), Gaps = 37/294 (12%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I  L  +     A+ L + +  +        + ++ +G+ +      A  ++D+M
Sbjct: 447 TYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEM 506

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSG 170
              G +P   +Y T     +     + AFR +  M  E    P +   NV I  LCK  G
Sbjct: 507 LRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCK-VG 565

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY- 229
            ++ A +  R++   G  PD  TY T+I G    G+   A++L+ EM +K  SP+V+TY 
Sbjct: 566 NLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYF 625

Query: 230 ----------------------------------TSLINGLCQSKSVEEAMRLFEEMRSK 255
                                              +L++G+C++ +++EA R   +M  +
Sbjct: 626 VLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEE 685

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           G+ PN ++Y+ L+   C      + ++L + M+ K   P+  T+  L   L K+
Sbjct: 686 GISPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKD 739


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 206/479 (43%), Gaps = 64/479 (13%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F+ D    + MIS L+ A+ F  A   L R+    C      + ++  G+ +  +     
Sbjct: 103 FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCK 162

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+ + M   GC P P  + +++     E     A++    M   G  P     N+ I ++
Sbjct: 163 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 166 CKNS----------------------------------------GTMDAAFKIFREMPNR 185
           C                                           G  D AF++ +EM  +
Sbjct: 223 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 282

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD+ TY  +I  LC   K+ +A  LF+EM+    +P V TYT LI+  C++  +E+A
Sbjct: 283 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQA 342

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LFEEMRS G  P V TY++L+    K     QA ++   M+    RPN VTY  L++G
Sbjct: 343 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 402

Query: 306 LCKEGKLQEAVEILDRM----------------KLQGLKPDAGLYGKIISCFCDIGKYQE 349
           LCK G + +A E+  ++                    L P+   YG ++   C   K   
Sbjct: 403 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 462

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A   LD M+  G  PN +       +++ ++ G CK    + A +V+L M          
Sbjct: 463 AHELLDAMLSSGCEPNHI-------VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 515

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           TY+SLI    K G +  + +++ +++ D C P+  T++A++  L    +  +A +LL L
Sbjct: 516 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSL 574



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 228/505 (45%), Gaps = 67/505 (13%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++V+  +     V KA ++F         G   D  T++++I     A     A+ L 
Sbjct: 290 TYSKVITFLCHATKVEKAFLLFQEMKMV---GVTPDVYTYTILIDSFCKAGLIEQAQWLF 346

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           + +    C  T   + ++   Y +  +   A  +F +M + GC P   +Y  ++  L + 
Sbjct: 347 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 406

Query: 134 NQLKLAFRFYRHMREIG------------------IQPCVASLNVLIKALCKNSGTMDAA 175
             +  AF  Y  +  IG                  + P V +   L+  LCK +  +D A
Sbjct: 407 GNISKAFEVYAKL--IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK-AHKVDHA 463

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            ++   M + GC P+   Y  LI+G C+ GKI  A+E+F +M      P+V TYTSLI+ 
Sbjct: 464 HELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDR 523

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           + +   ++ AM++  +M      PNV TY++++DGLC+ G S +A++LL +M  K   PN
Sbjct: 524 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPN 583

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +VTY+ L++GL K GK+  ++++  +M  +G  P+   Y  +I+  C  G   +A   L 
Sbjct: 584 VVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLG 643

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK----------------TDP----------- 388
           EM        +  W  +++ +   +QG  K                T P           
Sbjct: 644 EM-------KQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDC 696

Query: 389 -NRAFQVYLSMR--------NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            ++A ++ ++M           S+  D+  Y+SLI   C    + ++ R+  E+   G +
Sbjct: 697 FSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFV 756

Query: 440 PDEGTWSAVMTALWDRRKMRQAAEL 464
           P+   +  ++  L + +K  +A +L
Sbjct: 757 PELSVFVCLIKGLVEVKKWDEALQL 781



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 167/364 (45%), Gaps = 18/364 (4%)

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D +K+FG  P+  +Y  ++ +L    Q+ L FR  + M E G      ++     ALCK 
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKE 88

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
               DA   I RE        D+     +I+GL       EA      M   +C P VVT
Sbjct: 89  GRWADALDMIERE----DFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVT 144

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +L++G  + K +    R+   M ++G  PN   ++SL+   C     + A +LL  M 
Sbjct: 145 YRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMT 204

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKL--QEAVEILDRMKLQGLKPDAGL----YGKIISCFC 342
           +    P  V Y+  +  +C + KL   + +++ +++  + L  +  L          C C
Sbjct: 205 TCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLC 264

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNR 401
            +GK+ +A   + EM+  G  P+  T+S        V+  LC  T   +AF ++  M+  
Sbjct: 265 GVGKFDKAFQLIKEMMRKGFVPDTSTYS-------KVITFLCHATKVEKAFLLFQEMKMV 317

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            ++ D  TY+ LI  FCK G I ++  + +E+   GC P   T++A++ A    +++ QA
Sbjct: 318 GVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQA 377

Query: 462 AELL 465
            ++ 
Sbjct: 378 NDIF 381


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 206/479 (43%), Gaps = 64/479 (13%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           F+ D    + MIS L+ A+ F  A   L R+    C      + ++  G+ +  +     
Sbjct: 103 FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCK 162

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+ + M   GC P P  + +++     E     A++    M   G  P     N+ I ++
Sbjct: 163 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 166 CKNS----------------------------------------GTMDAAFKIFREMPNR 185
           C                                           G  D AF++ +EM  +
Sbjct: 223 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 282

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD+ TY  +I  LC   K+ +A  LF+EM+    +P V TYT LI+  C++  +E+A
Sbjct: 283 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQA 342

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LFEEMRS G  P V TY++L+    K     QA ++   M+    RPN VTY  L++G
Sbjct: 343 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 402

Query: 306 LCKEGKLQEAVEILDRM----------------KLQGLKPDAGLYGKIISCFCDIGKYQE 349
           LCK G + +A E+  ++                    L P+   YG ++   C   K   
Sbjct: 403 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 462

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A   LD M+  G  PN +       +++ ++ G CK    + A +V+L M          
Sbjct: 463 AHELLDAMLSSGCEPNHI-------VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 515

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           TY+SLI    K G +  + +++ +++ D C P+  T++A++  L    +  +A +LL L
Sbjct: 516 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSL 574



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 228/505 (45%), Gaps = 67/505 (13%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++V+  +     V KA ++F         G   D  T++++I     A     A+ L 
Sbjct: 290 TYSKVITFLCHATKVEKAFLLFQEMKMV---GVTPDVYTYTILIDSFCKAGLIEQAQWLF 346

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           + +    C  T   + ++   Y +  +   A  +F +M + GC P   +Y  ++  L + 
Sbjct: 347 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 406

Query: 134 NQLKLAFRFYRHMREIG------------------IQPCVASLNVLIKALCKNSGTMDAA 175
             +  AF  Y  +  IG                  + P V +   L+  LCK +  +D A
Sbjct: 407 GNISKAFEVYAKL--IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK-AHKVDHA 463

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            ++   M + GC P+   Y  LI+G C+ GKI  A+E+F +M      P+V TYTSLI+ 
Sbjct: 464 HELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDR 523

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           + +   ++ AM++  +M      PNV TY++++DGLC+ G S +A++LL +M  K   PN
Sbjct: 524 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPN 583

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +VTY+ L++GL K GK+  ++++  +M  +G  P+   Y  +I+  C  G   +A   L 
Sbjct: 584 VVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLG 643

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK----------------TDP----------- 388
           EM        +  W  +++ +   +QG  K                T P           
Sbjct: 644 EM-------KQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDC 696

Query: 389 -NRAFQVYLSMR--------NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            ++A ++ ++M           S+  D+  Y+SLI   C    + ++ R+  E+   G +
Sbjct: 697 FSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFV 756

Query: 440 PDEGTWSAVMTALWDRRKMRQAAEL 464
           P+   +  ++  L + +K  +A +L
Sbjct: 757 PELSVFVCLIKGLVEVKKWDEALQL 781



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 167/364 (45%), Gaps = 18/364 (4%)

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D +K+FG  P+  +Y  ++ +L    Q+ L FR  + M E G      ++     ALCK 
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKE 88

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
               DA   I RE        D+     +I+GL       EA      M   +C P VVT
Sbjct: 89  GRWADALDMIERE----DFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVT 144

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +L++G  + K +    R+   M ++G  PN   ++SL+   C     + A +LL  M 
Sbjct: 145 YRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMT 204

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKL--QEAVEILDRMKLQGLKPDAGL----YGKIISCFC 342
           +    P  V Y+  +  +C + KL   + +++ +++  + L  +  L          C C
Sbjct: 205 TCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLC 264

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNR 401
            +GK+ +A   + EM+  G  P+  T+S        V+  LC  T   +AF ++  M+  
Sbjct: 265 GVGKFDKAFQLIKEMMRKGFVPDTSTYS-------KVITFLCHATKVEKAFLLFQEMKMV 317

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            ++ D  TY+ LI  FCK G I ++  + +E+   GC P   T++A++ A    +++ QA
Sbjct: 318 GVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQA 377

Query: 462 AELL 465
            ++ 
Sbjct: 378 NDIF 381



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 38/242 (15%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ MI  L    +   A  LL  + ++ C      + ++  G G+  +   ++ +F +M
Sbjct: 551 TYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM 610

Query: 112 KEFGCEPTPKSYITVL-----AILVEENQLKLA----------FRFYR------------ 144
              GC P   +Y  ++     A L+++ +L L            + YR            
Sbjct: 611 SRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIA 670

Query: 145 ------HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM---PNRGCTPDSYTYG 195
                  M   G  P      +LI    K +G ++ A ++ +EM   P+   T D+  Y 
Sbjct: 671 SLGILEEMESYGTVPIAPVYGMLIDCFSK-AGRLEIAMELHKEMMEVPSSVKT-DNDMYA 728

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           +LI  LC   ++ EA  L+ EM  +   P +  +  LI GL + K  +EA++L   +  +
Sbjct: 729 SLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHE 788

Query: 256 GV 257
           GV
Sbjct: 789 GV 790


>gi|326527465|dbj|BAK08007.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 363

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 168/327 (51%), Gaps = 4/327 (1%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           +VL++  + +D      +F  A A     ++   + + LMI +L  A +F   E+LL R 
Sbjct: 40  EVLKIFASIRDAALITSVFRKACAR--RDYKPSEALYGLMIDRLAGARRFGDVEELLARA 97

Query: 77  NKEKCDITEDIFLSICRGYGRV-HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
             E+   ++D F  + + YG V + P  AM     M E+GC P+ K++  VL +LV   Q
Sbjct: 98  RAERFRFSDDFFYRLIKMYGNVANHPEKAMETLYAMSEYGCWPSTKTFNYVLHMLVCRRQ 157

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
            ++    Y     +G++      N+LIK LC+  G  + A  +  EMP + C P++ TY 
Sbjct: 158 YEVVHEVYSSAPRLGVELDTCCFNILIKGLCQ-FGRFNEALSLLDEMPKQDCRPNAMTYS 216

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           TL++ LCR  ++ EA ELF+ M  +      V Y  L++GLC+   V  A  LF+ M S+
Sbjct: 217 TLMHFLCRNCRVDEAFELFERMRKEEIDADTVVYNILVSGLCREGRVTSAYDLFKSMSSQ 276

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G  PN  TY  L+DGL       +A +L+ MM ++  RP+  +Y  L++G C    L +A
Sbjct: 277 GCHPNSGTYQVLLDGLVASKNFVEAKDLVGMMSAESLRPSFSSYKLLIDGFCSVNCLDDA 336

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFC 342
             +L +M  QG  P    + K+++  C
Sbjct: 337 HHVLKQMVDQGFVPRMSTWTKLLTSLC 363



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 12/261 (4%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL-CRLGKIYEA-KELFKEME 218
           LIK     +   + A +    M   GC P + T+  +++ L CR  + YE   E++    
Sbjct: 112 LIKMYGNVANHPEKAMETLYAMSEYGCWPSTKTFNYVLHMLVCR--RQYEVVHEVYSSAP 169

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                     +  LI GLCQ     EA+ L +EM  +   PN  TYS+LM  LC+     
Sbjct: 170 RLGVELDTCCFNILIKGLCQFGRFNEALSLLDEMPKQDCRPNAMTYSTLMHFLCRNCRVD 229

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A EL + M  +    + V Y+ L++GLC+EG++  A ++   M  QG  P++G Y  ++
Sbjct: 230 EAFELFERMRKEEIDADTVVYNILVSGLCREGRVTSAYDLFKSMSSQGCHPNSGTYQVLL 289

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
                   + EA + +  M    + P+  ++ L       ++ G C  +  + A  V   
Sbjct: 290 DGLVASKNFVEAKDLVGMMSAESLRPSFSSYKL-------LIDGFCSVNCLDDAHHVLKQ 342

Query: 398 MRNRSISVDSLTYSSLITCFC 418
           M ++       T++ L+T  C
Sbjct: 343 MVDQGFVPRMSTWTKLLTSLC 363



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 8/245 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A E    M    C P+  T+  +++ L   +  E    ++      GVE +   ++ L+
Sbjct: 125 KAMETLYAMSEYGCWPSTKTFNYVLHMLVCRRQYEVVHEVYSSAPRLGVELDTCCFNILI 184

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
            GLC+ G  ++A+ LL  M  +  RPN +TYSTL++ LC+  ++ EA E+ +RM+ + + 
Sbjct: 185 KGLCQFGRFNEALSLLDEMPKQDCRPNAMTYSTLMHFLCRNCRVDEAFELFERMRKEEID 244

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D 387
            D  +Y  ++S  C  G+   A +    M   G  PN  T+ +       ++ GL  + +
Sbjct: 245 ADTVVYNILVSGLCREGRVTSAYDLFKSMSSQGCHPNSGTYQV-------LLDGLVASKN 297

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
              A  +   M   S+     +Y  LI  FC    +  +  ++ ++V  G +P   TW+ 
Sbjct: 298 FVEAKDLVGMMSAESLRPSFSSYKLLIDGFCSVNCLDDAHHVLKQMVDQGFVPRMSTWTK 357

Query: 448 VMTAL 452
           ++T+L
Sbjct: 358 LLTSL 362



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 8/188 (4%)

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +AME L  M      P+  T++ +L+ L    + +   E+       G++ D   +  +I
Sbjct: 125 KAMETLYAMSEYGCWPSTKTFNYVLHMLVCRRQYEVVHEVYSSAPRLGVELDTCCFNILI 184

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
              C  G++ EA + LDEM      PN +T+S       T++  LC+    + AF+++  
Sbjct: 185 KGLCQFGRFNEALSLLDEMPKQDCRPNAMTYS-------TLMHFLCRNCRVDEAFELFER 237

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           MR   I  D++ Y+ L++  C++G +  +  +   +   GC P+ GT+  ++  L   + 
Sbjct: 238 MRKEEIDADTVVYNILVSGLCREGRVTSAYDLFKSMSSQGCHPNSGTYQVLLDGLVASKN 297

Query: 458 MRQAAELL 465
             +A +L+
Sbjct: 298 FVEAKDLV 305



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 9/178 (5%)

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           + ++P+   Y  +++ L    +  +  E+L R + +  +     + ++I  + ++  + E
Sbjct: 65  RDYKPSEALYGLMIDRLAGARRFGDVEELLARARAERFRFSDDFFYRLIKMYGNVANHPE 124

Query: 350 AA-NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVDS 407
            A   L  M   G  P+  T+       N V+  L C+       +VY S     + +D+
Sbjct: 125 KAMETLYAMSEYGCWPSTKTF-------NYVLHMLVCRRQYEVVHEVYSSAPRLGVELDT 177

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             ++ LI   C+ G  +++  ++DE+    C P+  T+S +M  L    ++ +A EL 
Sbjct: 178 CCFNILIKGLCQFGRFNEALSLLDEMPKQDCRPNAMTYSTLMHFLCRNCRVDEAFELF 235


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 204/414 (49%), Gaps = 27/414 (6%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLD-RVNKEKCDITEDIFLSICRGYGR------- 97
           FRH   ++  MI  L +      A++L+   V+++  D    +F +I    G        
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYV 68

Query: 98  ----VHRPLDAMRVFDKMKEFGCEPTPKSYIT------VLAILVEENQLKLAFRFYRHMR 147
               +   L++  + D ++ F      K ++       VL   ++    KL + FY+ + 
Sbjct: 69  FSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKLVWGFYKEIL 128

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G    +   N+L+   CK  G M  A  +F E+   G  P   ++ TL+NG  RLG +
Sbjct: 129 ECGYPASLYFFNILMHRFCKE-GEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDL 187

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            E   L   M      P V TY+ LINGLC+   + +A  LF EM   G+ PN  T+++L
Sbjct: 188 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTL 247

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG CK G    AME  + M+ +   P+++TY+TL+ GLCK+G L++A +++D M ++GL
Sbjct: 248 IDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGL 307

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KPD   Y  +I   C  G  + A  +   M+   I  + + ++        ++ GLC+  
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYT-------ALISGLCREG 360

Query: 388 PN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            +  A ++   M +  +  D+ TY+ +I  FCKKGD+   ++++ E+  DG +P
Sbjct: 361 QSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVP 414



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 157/292 (53%), Gaps = 8/292 (2%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
            +  ++E+   G     Y +  L++  C+ G++  A+ +F E+      P+VV++ +L+N
Sbjct: 120 VWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMN 179

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G  +   ++E  RL   M + GV+P+V+TYS L++GLCK    + A EL   MI     P
Sbjct: 180 GYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVP 239

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N VT++TL++G CK G +  A+E    M  QG  PD   Y  +I   C  G  ++A + +
Sbjct: 240 NGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413
           DEM + G+ P+++T++       T++ G CK  D   A      M   +I +D + Y++L
Sbjct: 300 DEMSMKGLKPDKITYT-------TLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTAL 352

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I+  C++G    + +++ E++  G  PD GT++ ++     +  ++  ++LL
Sbjct: 353 ISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLL 404



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 18/280 (6%)

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D Y +  LI      G +++A E F+            T   ++    + K  +     +
Sbjct: 65  DVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKLVWGFY 124

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +E+   G   +++ ++ LM   CK G    A  +   +     RP++V+++TL+NG  + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRL 184

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G L E   +   M   G++PD   Y  +I+  C   K  +A     EM+  G+ PN +T+
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTF 244

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +       T++ G CKT   + A + Y  M  +  S D +TY++LI   CKKGD+ ++  
Sbjct: 245 T-------TLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQD 297

Query: 429 IVDELVLDGCLPDEGTWSAVM----------TALWDRRKM 458
           ++DE+ + G  PD+ T++ ++          TAL+ R++M
Sbjct: 298 LIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRM 337



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 129/281 (45%), Gaps = 36/281 (12%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +     + R A+ + D + K     +   F ++  GY R+    +  R+   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CK +G++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCK-TGSI 257

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A + ++EM  +G +PD  TY TLI GLC+ G + +A++L  EM  K   P  +TYT+L
Sbjct: 258 DLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317

Query: 233 -----------------------------------INGLCQSKSVEEAMRLFEEMRSKGV 257
                                              I+GLC+     +A ++  EM S G+
Sbjct: 318 IDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGL 377

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +P+  TY+ +++  CK G      +LL+ M    H P +VT
Sbjct: 378 KPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 233/491 (47%), Gaps = 52/491 (10%)

Query: 3   VKTMFKWSTKITSAQVLQLIR---AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISK 59
           ++ M K S  +  A++ +++R     K VN+AL +F           R   ST++ +I  
Sbjct: 141 IQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGRKC---RPTASTYNSIILM 197

Query: 60  LVSANQFRPAEDLLDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEP 118
           L+         +L + +  E  C      + ++   + +++R   A+R+FD+MKE G +P
Sbjct: 198 LMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQP 257

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
           T K Y T++ I  +  +++ A    + MR       V +   LI+ L K SG ++ A+  
Sbjct: 258 TAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGK-SGRVEDAYMT 316

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           ++ M   GC PD      LIN L R   + +A +LF EM+   C+P VVTY ++I  L +
Sbjct: 317 YKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFE 376

Query: 239 SKS-VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +K+ + EA   FE M+  G+ P+ FTYS L+DG CK     +A+ LL+ M  K   P   
Sbjct: 377 AKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPA 436

Query: 298 TYSTLLN--GLCKE---------------------------------GKLQEAVEILDRM 322
            Y +L+N  G+ K                                  G+L EA+ + + M
Sbjct: 437 AYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEM 496

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           K  G  PD   Y  +++      +  EA +    M   G TP+       I  HN ++ G
Sbjct: 497 KKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPD-------INSHNIILNG 549

Query: 383 LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           L +T  P  A +++  M+N +I  D +++++++ C  + G   ++A+++ E+   G   D
Sbjct: 550 LARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYD 609

Query: 442 EGTWSAVMTAL 452
             T+S+++ A+
Sbjct: 610 LITYSSILEAV 620



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/493 (26%), Positives = 227/493 (46%), Gaps = 25/493 (5%)

Query: 6   MFKWST-----------KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW             K+    V ++++ + +V+  +  F  A       F HD++T+ 
Sbjct: 65  IFKWGPDAEKALEVLKLKVDPRLVREILKIDVEVSVKIQFFKWAGKR--RNFEHDSTTYM 122

Query: 55  LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114
            +I  L     F      +  + K  C +       I R  G+      A+ VF ++K  
Sbjct: 123 ALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGR 182

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMD 173
            C PT  +Y +++ +L++E   +     Y  M  E+   P   + + LI A  K +   D
Sbjct: 183 KCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRD-D 241

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
           +A ++F EM   G  P +  Y TL+    ++GK+ EA  L KEM  + C  TV TYT LI
Sbjct: 242 SAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELI 301

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
            GL +S  VE+A   ++ M   G +P+V   ++L++ L +      A++L   M      
Sbjct: 302 RGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCA 361

Query: 294 PNIVTYSTLLNGLCK-EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           PN+VTY+T++  L + +  L EA    +RMK  G+ P +  Y  +I  +C   + ++A  
Sbjct: 362 PNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALL 421

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSS 412
            L+EM   G  P    +   I   NT+  G+ K   + A +++  ++       +  Y+ 
Sbjct: 422 LLEEMDEKGFPPCPAAYCSLI---NTL--GVAKR-YDVANELFQELKENCGCSSARVYAV 475

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           +I  F K G ++++  + +E+   GC PD   ++A+MT +    +M +A  L      N 
Sbjct: 476 MIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENG 535

Query: 473 CVEAEVDIQNQDV 485
           C     DI + ++
Sbjct: 536 CTP---DINSHNI 545


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 192/369 (52%), Gaps = 9/369 (2%)

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           V R   A+ ++ +M+    EP   +   ++       Q+ LAF     + ++G QP   +
Sbjct: 71  VKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTIT 130

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           LN L+K LC   G +  A +   ++  +G      +YG LING+C++G+   A  L + +
Sbjct: 131 LNTLMKGLCL-EGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRI 189

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           E  +  P VV Y+ +I+ LC+   V+EA  L+ EM  KG+ P+V TYS L+ G C  G  
Sbjct: 190 ERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQL 249

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
           ++A++LL  M+ +   P+I TY+ L++ LCKEGK++EA  +L  M    +  D  +Y  +
Sbjct: 250 NRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTL 309

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYL 396
           +  +C + +   A      M   G+TP+   +S+       ++ GLCK    + A  ++ 
Sbjct: 310 MDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSI-------MINGLCKIKRVDEALNLFE 362

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            +  +++  D++TY+SLI C CK G I     + DE++  G  PD  T++ ++ AL    
Sbjct: 363 EIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNG 422

Query: 457 KMRQAAELL 465
            + +A  L 
Sbjct: 423 HLDRAIALF 431



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 203/422 (48%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ +  T + ++  L    + + A    D+V  +   ++   +  +  G  ++     A
Sbjct: 123 GYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAA 182

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+  +++ +   P    Y  ++  L ++  +  A+  Y  M   GI P V + ++L+  
Sbjct: 183 IRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSG 242

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G ++ A  +  EM      PD YTY  L++ LC+ GK+ EA+ +   M     + 
Sbjct: 243 FCI-VGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNL 301

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV Y++L++G C    V  A R+F  M   GV P+V  YS +++GLCK     +A+ L 
Sbjct: 302 DVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLF 361

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + +  K   P+ VTY++L++ LCK G++    ++ D M  +G  PD   Y  +I   C  
Sbjct: 362 EEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKN 421

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G    A    ++M    I PN  T+++       ++ GLCK      A + +  +  +  
Sbjct: 422 GHLDRAIALFNKMKDQAIRPNVYTFTI-------LLDGLCKVGRLKNALEFFQDLLTKGY 474

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            ++  TY+ +I   CK+G + ++  +   +  +GC+ D  T+  ++ A +D+ +  +A +
Sbjct: 475 CLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEK 534

Query: 464 LL 465
           L+
Sbjct: 535 LV 536



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 191/364 (52%), Gaps = 19/364 (5%)

Query: 8   KWSTK---ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN 64
           +WS +   +  + ++  +  +  V++A   +D  T     G   D  T+S+++S      
Sbjct: 191 RWSIRPNVVIYSMIIDRLCKDTLVDEA---YDLYTEMVGKGISPDVVTYSILVSGFCIVG 247

Query: 65  QFRPAEDLLDRVNKEKCDITEDIFL------SICRGYGRVHRPLDAMRVFDKMKEFGCEP 118
           Q   A DLL+ +  E  +I  DI+       ++C+  G+V    +A  V   M +     
Sbjct: 248 QLNRAIDLLNEMVLE--NINPDIYTYTILVDALCKE-GKVK---EAENVLAVMVKACVNL 301

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178
               Y T++      N++  A R +  M ++G+ P V   +++I  LCK    +D A  +
Sbjct: 302 DVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCK-IKRVDEALNL 360

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           F E+  +   PD+ TY +LI+ LC+ G+I    +LF EM  +   P V+TY +LI+ LC+
Sbjct: 361 FEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCK 420

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +  ++ A+ LF +M+ + + PNV+T++ L+DGLCK G    A+E  Q +++K +  N+ T
Sbjct: 421 NGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRT 480

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           Y+ ++NGLCKEG L EA+ +  RM+  G   DA  +  +I  F D  +  +A   + EM+
Sbjct: 481 YTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMI 540

Query: 359 LGGI 362
             G+
Sbjct: 541 ARGL 544



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 142/271 (52%), Gaps = 9/271 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A   F  M     +P    +  ++  L   K    A+ L+++M    VEP+ FT + ++
Sbjct: 41  DAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIII 100

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           +  C  G    A   +  ++   ++PN +T +TL+ GLC EGK++EA+   D++  QG +
Sbjct: 101 NCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFR 160

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TD 387
                YG +I+  C IG+ + A   L  +    I PN + +S+       ++  LCK T 
Sbjct: 161 LSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSM-------IIDRLCKDTL 213

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            + A+ +Y  M  + IS D +TYS L++ FC  G ++++  +++E+VL+   PD  T++ 
Sbjct: 214 VDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTI 273

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           ++ AL    K+++A  +L + ++  CV  +V
Sbjct: 274 LVDALCKEGKVKEAENVLAV-MVKACVNLDV 303



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 133/278 (47%), Gaps = 8/278 (2%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A   F  M +   TP ++ +  ++  L  + +   A  L+K+ME     P   T   +
Sbjct: 40  DDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNII 99

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C    V  A     ++   G +PN  T ++LM GLC  G   +A+     ++++  
Sbjct: 100 INCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGF 159

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           R + ++Y  L+NG+CK G+ + A+ +L R++   ++P+  +Y  II   C      EA +
Sbjct: 160 RLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYD 219

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
              EMV  GI+P+ +T+S+       +V G C     NRA  +   M   +I+ D  TY+
Sbjct: 220 LYTEMVGKGISPDVVTYSI-------LVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYT 272

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            L+   CK+G + ++  ++  +V      D   +S +M
Sbjct: 273 ILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLM 310


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 179/321 (55%), Gaps = 14/321 (4%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGL 201
           R M ++G  P V S N+L+K LC  + + +A  ++ + MP+ G  C PD  +Y T+ING 
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEA-LELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
            + G + +A   + EM  +   P VVTY+S+I  LC+++++++AM +   M   GV PN 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY+S++ G C  G   +A+  L+ M S    P++VTY++L++ LCK G+  EA ++ D 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  +GLKP+   YG ++  +   G   E    LD MV  GI PN   +S+ I  +    Q
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAK--Q 387

Query: 382 GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           G  K D  +A  V+  MR + ++ D++TY ++I   CK G +  + R  ++++ +   P 
Sbjct: 388 G--KVD--QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443

Query: 442 EGTWSAVMTAL-----WDRRK 457
              +++++ +L     WD+ K
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAK 464



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 162/348 (46%), Gaps = 39/348 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDL-LDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           GFR D   F+ ++  L +  +   A D+ L R+ +  C      +  + +G    +R  +
Sbjct: 121 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE 180

Query: 104 AMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           A+ +   M + G  C P   SY TV+    +E  L  A+  Y  M + GI P V + + +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I ALCK +  MD A ++   M   G  P+  TY ++++G C  G+  EA    K+M +  
Sbjct: 241 IAALCK-AQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG----------- 270
             P VVTY SL++ LC++    EA ++F+ M  +G++P + TY +L+ G           
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359

Query: 271 ---------------------LC---KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
                                +C   K G   QAM +   M  +   P+ VTY T++  L
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGIL 419

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           CK G++++A+   ++M  + L P   +Y  +I   C   K+ +A ++ 
Sbjct: 420 CKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYF 467



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 148/324 (45%), Gaps = 16/324 (4%)

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGC---TPDSYTYGTLINGLCRLGKIYEAK 211
           +  LN  +  + ++S    AA   +  M   G    TP+  TYG LI   C  G++    
Sbjct: 54  IYGLNCALADVARHSPA--AAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGF 111

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL-FEEMRSKGVEPNVFTYSSLMDG 270
                +  K      + +T L+ GLC  K   +AM +    M   G  PNVF+Y+ L+ G
Sbjct: 112 AALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 271 LCKGGCSSQAMELLQMMISKRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           LC    S +A+ELLQMM        P++V+Y+T++NG  KEG L +A      M  +G+ 
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D 387
           P+   Y  II+  C      +A   L  MV  G+ PN        R +N++V G C +  
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN-------CRTYNSIVHGYCSSGQ 284

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
           P  A      M +  +  D +TY+SL+   CK G   ++ ++ D +   G  P+  T+  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 448 VMTALWDRRKMRQAAELLLLELMN 471
           ++     +  + +   LL L + N
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRN 368



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 108/261 (41%), Gaps = 44/261 (16%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYS 265
           +A+ +F E+  +    ++      +  + +  S   A+  +  M   G   V PN+ TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYG 95

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDRMKL 324
            L+   C  G        L  +I K  R + + ++ LL GLC + +  +A++I L RM  
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G  P+   Y  ++   CD  + QEA   L  M   G                    G C
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG--------------------GDC 195

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             D                    ++Y+++I  F K+GD+ K+     E++  G LP+  T
Sbjct: 196 PPD-------------------VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVT 236

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S+++ AL   + M +A E+L
Sbjct: 237 YSSIIAALCKAQAMDKAMEVL 257



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 1/173 (0%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           +++G   D  T++ ++  L    +   A  + D + K         + ++ +GY      
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           ++   + D M   G  P    +  ++    ++ ++  A   +  MR+ G+ P   +   +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           I  LCK SG ++ A + F +M +   +P +  Y +LI+ LC   K  +AK+ F
Sbjct: 416 IGILCK-SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYF 467



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           +FDS T     G + + +T+  ++    +         LLD + +        +F  +  
Sbjct: 326 MFDSMTKR---GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +   AM VF KM++ G  P   +Y TV+ IL +  +++ A R++  M +  + P
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 154 CVASLNVLIKALC 166
                N LI +LC
Sbjct: 443 GNIVYNSLIHSLC 455


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 203/414 (49%), Gaps = 27/414 (6%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLD-RVNKEKCDITEDIFLSICRGYGR------- 97
           FRH   ++  MI  L +      A++L+   V+++  D    +F +I    G        
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYV 68

Query: 98  ----VHRPLDAMRVFDKMKEFGCEPTPKSYI------TVLAILVEENQLKLAFRFYRHMR 147
               +   L++  + D ++ F      K ++       VL   ++    K  + FY+ + 
Sbjct: 69  FSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEIL 128

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G    +   N+L+   CK  G M  A  +F E+   G  P   ++ TL+NG  RLG +
Sbjct: 129 ECGYPASLYFFNILMHRFCKE-GEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDL 187

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            E   L   M      P V TY+ LINGLC+   + +A  LF+EM   G+ PN  T+++L
Sbjct: 188 DEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTL 247

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG CK G    AME  + M+ +   P+++TY+TL+ GLCKEG L++A +++D M ++GL
Sbjct: 248 IDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGL 307

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KPD   Y  +I   C  G  + A  +   M+   I  + + ++        ++ GLC+  
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYT-------ALISGLCREG 360

Query: 388 PNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            +   +  L  M +  +  D+ TY+ +I  FCKKGD+   ++++ E+  DG +P
Sbjct: 361 QSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 159/293 (54%), Gaps = 8/293 (2%)

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
           + +  ++E+   G     Y +  L++  C+ G++  A+ +F E+      P+VV++ +L+
Sbjct: 119 SVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLM 178

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           NG  +   ++E  RL   M   G++P+V+TYS L++GLCK    + A EL   MI     
Sbjct: 179 NGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLV 238

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN VT++TL++G CK G +  A+E    M  QG  PD   Y  +I   C  G  ++A + 
Sbjct: 239 PNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDL 298

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSS 412
           +DEM + G+ P+++T++       T++ G CK  D   AF+    M   +I +D + Y++
Sbjct: 299 IDEMSMKGLKPDKITYT-------TLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTA 351

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           LI+  C++G    + +++ E++  G  PD GT++ ++     +  ++  ++LL
Sbjct: 352 LISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLL 404



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 126/261 (48%), Gaps = 8/261 (3%)

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D Y +  LI      G +++A E F+            T   ++    + K  +     +
Sbjct: 65  DVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFY 124

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +E+   G   +++ ++ LM   CK G    A  +   +     RP++V+++TL+NG  + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRL 184

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G L E   +   M   G++PD   Y  +I+  C   K  +A    DEM+  G+ PN +T+
Sbjct: 185 GDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTF 244

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +       T++ G CKT   + A + Y  M  +  S D +TY++LI   CK+GD+ ++  
Sbjct: 245 T-------TLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQD 297

Query: 429 IVDELVLDGCLPDEGTWSAVM 449
           ++DE+ + G  PD+ T++ ++
Sbjct: 298 LIDEMSMKGLKPDKITYTTLI 318



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 36/281 (12%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +     + R A+ + D + K     +   F ++  GY R+    +  R+   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CK +G++
Sbjct: 199 GSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCK-TGSI 257

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A + ++EM  +G +PD  TY TLI GLC+ G + +A++L  EM  K   P  +TYT+L
Sbjct: 258 DLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTL 317

Query: 233 -----------------------------------INGLCQSKSVEEAMRLFEEMRSKGV 257
                                              I+GLC+      A ++  EM S G+
Sbjct: 318 IDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGL 377

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +P+  TY+ +++  CK G      +LL+ M    H P +VT
Sbjct: 378 KPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 217/443 (48%), Gaps = 47/443 (10%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T   V+Q +     V+ AL + ++       G+  D +T S++I++L  A++ + A++ L
Sbjct: 51  TCHSVIQELCKAGRVDSALSLLETMIK---RGYCPDMATHSMLINELCKADKIQEAQEFL 107

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
             +N+         F                                 SY ++L  L + 
Sbjct: 108 QGMNRTISTRASSCF---------------------------------SYNSLLNSLCKA 134

Query: 134 NQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
            ++  AF  +  M  E  + P V S ++LI   CK    +  A K++++M +  C P+  
Sbjct: 135 KKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKID-ELGRAEKLYKQMIDLNCVPNVT 193

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY   +NGL R G+I +A+ +++EM +  CSP V+TY++LI+G   ++  ++A  LFE M
Sbjct: 194 TYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAM 253

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            S+G  PN  TY+ L+ GLCK     +A EL + M+ +   P+ VTY+TLL G C  GK+
Sbjct: 254 ISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKI 313

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           ++AVE+ D M  +G  PD   Y  ++  F   GK  EA      MV     P+ ++    
Sbjct: 314 EQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVS---- 369

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSM-RNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
              HN ++ GL K    + A +V+  M ++   S D +TY+SLI   C +  + ++ ++ 
Sbjct: 370 ---HNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVF 426

Query: 431 DELVLDGCLPDEGTWSAVMTALW 453
            E+      PD   ++ ++ A++
Sbjct: 427 KEIDRLKLSPDPHAFNVLLEAMY 449



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 203/384 (52%), Gaps = 17/384 (4%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +   +C+  GRV     A+ + + M + G  P   ++  ++  L + ++++ A  F + M
Sbjct: 55  VIQELCKA-GRVD---SALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 110

Query: 147 -REIGIQPCVA-SLNVLIKALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCR 203
            R I  +     S N L+ +LCK +  +  AF IF  M   R   PD  +Y  LI+G C+
Sbjct: 111 NRTISTRASSCFSYNSLLNSLCK-AKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCK 169

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
           + ++  A++L+K+M    C P V TY + +NGL +   + +A  ++EEM S G  P+V T
Sbjct: 170 IDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVIT 229

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           YS+L+ G        QA EL + MIS+  RPN VTY+ LL+GLCKE K  EA E+  +M 
Sbjct: 230 YSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMV 289

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            +G  PD   Y  ++  FC++GK ++A    DEMV  G  P+ + +       N +++G 
Sbjct: 290 ERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAY-------NCLLKGF 342

Query: 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD-GCLPD 441
            +   P  A Q++  M +R    D+++++ +I    K   +  +  + + +  D GC PD
Sbjct: 343 FRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPD 402

Query: 442 EGTWSAVMTALWDRRKMRQAAELL 465
             T+++++  L   +++ +A ++ 
Sbjct: 403 LVTYNSLIFGLCGEQRLSEAMKVF 426



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 185/361 (51%), Gaps = 19/361 (5%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCV---ASLNVLIKALCKNSGTMDAAFKI 178
           ++   L  L +  +++ AF   R M+E           + + +I+ LCK +G +D+A  +
Sbjct: 13  AWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCK-AGRVDSALSL 71

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM----ETKACSPTVVTYTSLIN 234
              M  RG  PD  T+  LIN LC+  KI EA+E  + M     T+A S    +Y SL+N
Sbjct: 72  LETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASS--CFSYNSLLN 129

Query: 235 GLCQSKSVEEAMRLFEEMRS-KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
            LC++K V +A  +F  M S + V P+V +YS L+DG CK     +A +L + MI     
Sbjct: 130 SLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCV 189

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN+ TY+  LNGL ++G++ +A  + + M   G  PD   Y  +I  F    K+ +A   
Sbjct: 190 PNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHEL 249

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSS 412
            + M+  G  PN +T+       N ++ GLCK + P+ A +++  M  R    D +TY++
Sbjct: 250 FEAMISRGCRPNAVTY-------NCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTT 302

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           L+  FC  G I ++  + DE+V  G  PD   ++ ++   +   K  +A +L  + +  +
Sbjct: 303 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE 362

Query: 473 C 473
           C
Sbjct: 363 C 363



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 2/232 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+S +I     A +   A +L + +    C      +  +  G  +  +P +A
Sbjct: 222 GCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEA 281

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F KM E GC+P   +Y T+L       +++ A   +  M   G  P V + N L+K 
Sbjct: 282 HELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKG 341

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET-KACS 223
             + +G    A ++F+ M +R C PD+ ++  +I+GL +  ++ +A E+F+ ME    CS
Sbjct: 342 FFR-AGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCS 400

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           P +VTY SLI GLC  + + EAM++F+E+    + P+   ++ L++ +   G
Sbjct: 401 PDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAG 452



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 14/246 (5%)

Query: 227 VTYTSLINGLCQSKSVE---EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           V +T+ + GLC+S  +E   EA R  +E  S    P+  T  S++  LCK G    A+ L
Sbjct: 12  VAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSL 71

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK--LQGLKPDAGLYGKIISCF 341
           L+ MI + + P++ T+S L+N LCK  K+QEA E L  M   +         Y  +++  
Sbjct: 72  LETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSL 131

Query: 342 CDIGKYQEAANFLDEMVLG-GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           C   K  +A      MV    + P+ +++S+       ++ G CK D   RA ++Y  M 
Sbjct: 132 CKAKKVHQAFAIFSTMVSERSVVPDVVSYSI-------LIDGFCKIDELGRAEKLYKQMI 184

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           + +   +  TY++ +    +KG I  +  + +E++  GC PD  T+S ++      RK  
Sbjct: 185 DLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHD 244

Query: 460 QAAELL 465
           QA EL 
Sbjct: 245 QAHELF 250



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 14/186 (7%)

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK---LQGLKPDAGLYGKIISCFC 342
           M +  +   N V ++  L GLCK GK+++A E    M+        P +G    +I   C
Sbjct: 1   MAVESKAPLNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELC 60

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
             G+   A + L+ M+  G  P+  T       H+ ++  LCK D  +  Q +L   NR+
Sbjct: 61  KAGRVDSALSLLETMIKRGYCPDMAT-------HSMLINELCKADKIQEAQEFLQGMNRT 113

Query: 403 ISVDS---LTYSSLITCFCKKGDIHKSARIVDELVLD-GCLPDEGTWSAVMTALWDRRKM 458
           IS  +    +Y+SL+   CK   +H++  I   +V +   +PD  ++S ++       ++
Sbjct: 114 ISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDEL 173

Query: 459 RQAAEL 464
            +A +L
Sbjct: 174 GRAEKL 179


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 158/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A  +F EM ++G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+ FTY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 203/427 (47%), Gaps = 51/427 (11%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++Q++ + K    A  +F +A  E     R D   FS +I+  + +   R A +   R+ 
Sbjct: 35  LIQIVVSRKGKGSASAVF-AAILETKGTLRSDIYVFSGLITAYLESGFLRDAIECY-RLT 92

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           KE                 +   P D  R                   VL  L++    K
Sbjct: 93  KEH----------------KFRVPFDTCR------------------KVLEHLMKLKYFK 118

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           L + FY    E G    +   N+L+ +  K  G +  A  +F  +   G  P   ++ TL
Sbjct: 119 LVWGFYEENLECGYPASLYFFNILMHSFVKE-GEIRLAQSVFDAITKWGLRPSVVSFNTL 177

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           +NG  +LG + E   L   M+     P V TY+ LINGLC+   +++A  LF+EM  KG+
Sbjct: 178 MNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGL 237

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ GLCK+G L++A +
Sbjct: 238 VPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQD 297

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           ++D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  + + ++       
Sbjct: 298 LIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT------- 350

Query: 378 TVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKGD+   ++++ E+
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 434 VLDGCLP 440
             DG  P
Sbjct: 408 QRDGYKP 414



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 152/275 (55%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++   + G+I  A+ +F  +      P+VV++ +L+NG  +   + E  RL   
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A  L   M+ K   PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +DEM++ G+ P++ T++ 
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYT- 315

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK  D   AF+    M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  P+ GT++ ++     +  +   ++LL
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 137/284 (48%), Gaps = 9/284 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E        D Y +  LI      G + +A E ++  +        
Sbjct: 43  KGKGSASAVFAAILETKGT-LRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPF 101

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + K  +     +EE    G   +++ ++ LM    K G    A  +   
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDA 161

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I+  C   K
Sbjct: 162 ITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+S 
Sbjct: 222 MDDANVLFDEMLDKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           D +TY++LI   CKKGD+ ++  ++DE+++ G  PD+ T++ ++
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLI 318


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 185/346 (53%), Gaps = 18/346 (5%)

Query: 99  HRPLDAMRVFDKMKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           +R  +A+ +   M + G  C P   SY TV+    +E  L         M +  I P V 
Sbjct: 65  NRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLD-------KMLDQRISPNVV 117

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N +I ALCK + T+D A ++   M   G  PD  TY ++++G C  G+  EA    K+
Sbjct: 118 TYNSIIAALCK-AQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKK 176

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M +    P VVTY SL++ LC++    EA ++F+ M  +G++P++ TY +L+ G    G 
Sbjct: 177 MRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGA 236

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +   LL +M+     PN   +S L+    K+ K++EA+ +  +M+ QGL P+A  YG 
Sbjct: 237 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           +I   C  G+ ++A  + ++M+  G+ P+ +       ++N+++  LC  D   +A +++
Sbjct: 297 VIDVLCKSGRVEDAMLYFEQMIDEGLRPDSI-------VYNSLIHSLCIFDKWEKAEELF 349

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           L M +R I + ++ ++S+I   CK+G + +S ++ D +V  G  PD
Sbjct: 350 LEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 174/325 (53%), Gaps = 19/325 (5%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEA 210
           P V S N+L+  LC  + + +A  ++   M + G  C PD  +Y T+ING  + G +   
Sbjct: 49  PDVFSYNILLNGLCDENRSQEA-LELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL--- 104

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
                +M  +  SP VVTY S+I  LC++++V++AM +   M   GV P+  TY+S++ G
Sbjct: 105 ----DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 160

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
            C  G   +A+  L+ M S    P++VTY++L++ LCK G+  EA +I D M  +GLKPD
Sbjct: 161 FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD 220

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              YG ++  +   G   E    LD MV  GI PN   +S+       +V    K +   
Sbjct: 221 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI-------LVCAYAKQEKVE 273

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  V+  MR + ++ +++TY ++I   CK G +  +    ++++ +G  PD   +++++
Sbjct: 274 EAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLI 333

Query: 450 TALWDRRKMRQAAELLLLELMNKCV 474
            +L    K  +A E L LE++++ +
Sbjct: 334 HSLCIFDKWEKAEE-LFLEMLDRGI 357



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 131/265 (49%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V   M + G  P   +Y +++       Q K A  F + MR  G++P V + N L+ 
Sbjct: 135 AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 194

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCKN G    A KIF  M  RG  PD  TYGTL+ G    G + E   L   M      
Sbjct: 195 YLCKN-GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P    ++ L+    + + VEEAM +F +MR +G+ PN  TY +++D LCK G    AM  
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  RP+ + Y++L++ LC   K ++A E+   M  +G+      +  II   C 
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCK 373

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G+  E+    D MV  G+ P+ +T
Sbjct: 374 EGRVIESGKLFDLMVRIGVKPDIIT 398



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 18/232 (7%)

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR--PNIVTYS 300
           E+A  +F+E+  +G+ P+VF+Y+ L++GLC    S +A+ELL +M        P++V+YS
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
           T++NG  KEG L       D+M  Q + P+   Y  II+  C      +A   L  MV  
Sbjct: 93  TVINGFFKEGDL-------DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           G+ P+ +T+       N++V G C +  P  A      MR+  +  D +TY+SL+   CK
Sbjct: 146 GVMPDCMTY-------NSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            G   ++ +I D +   G  PD  T+  ++     +  + +   LL L + N
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRN 250



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRGYGRVHR 100
           ++G   D  T++ ++  L    +   A  + D + K   K DIT   + ++ +GY     
Sbjct: 179 SDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT--TYGTLLQGYATKGA 236

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            ++   + D M   G  P    +  ++    ++ +++ A   +  MR+ G+ P   +   
Sbjct: 237 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I  LCK SG ++ A   F +M + G  PDS  Y +LI+ LC   K  +A+ELF EM  +
Sbjct: 297 VIDVLCK-SGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDR 355

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
               + + + S+I+  C+   V E+ +LF+ M   GV+P++ T
Sbjct: 356 GICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIIT 398



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 4/195 (2%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS T     G + D +T+  ++    +         LLD + +        +F  +  
Sbjct: 208 IFDSMTKR---GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVC 264

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +  +  +AM VF KM++ G  P   +Y TV+ +L +  +++ A  ++  M + G++P
Sbjct: 265 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP 324

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
                N LI +LC      + A ++F EM +RG    +  + ++I+  C+ G++ E+ +L
Sbjct: 325 DSIVYNSLIHSLCIFD-KWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKL 383

Query: 214 FKEMETKACSPTVVT 228
           F  M      P ++T
Sbjct: 384 FDLMVRIGVKPDIIT 398


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 209/421 (49%), Gaps = 22/421 (5%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICRGYGRVHRPLDAMRV 107
            ++ ++  L    Q R A  LLD +    C    +T +I L + C+G G  +R   AM +
Sbjct: 154 AYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRG--YR--QAMEL 209

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            D M+  GC PT  +Y  ++  +  E  +  A      +   G  P   + N ++K L +
Sbjct: 210 IDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGL-R 268

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
            +G  +   ++  EM +  C P   T   +I+ LC+ G    A  L ++M    C+  +V
Sbjct: 269 TAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIV 328

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY ++++GLC+   V+ A+ L   M++ G +PN+FTY+ L+ GLC       A +L+  M
Sbjct: 329 TYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKM 388

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                 P+I+T++T++  LC++G   +AVE+  +M  +G  P++  Y  +I      GK 
Sbjct: 389 SQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKM 448

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR---AFQVYLSMRNRSIS 404
           +++   L+EM   G  P        I  H   +   C  + ++   A Q+   +++  IS
Sbjct: 449 EQSLELLNEMGSKGFNP-------EINYH---LLAECLNEEDKLVEAIQMVHKLQDTGIS 498

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             ++ Y++++   C+ G   ++  I+  +V DGC+PDE T+S ++  L     M++A EL
Sbjct: 499 PQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEAREL 558

Query: 465 L 465
           L
Sbjct: 559 L 559



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 174/351 (49%), Gaps = 13/351 (3%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T +T   ++  +  E DV+ A  + +S  +    G   +   ++ ++  L +A ++   E
Sbjct: 221 TNVTYNVIMDGMCREGDVDYARELLNSLPSY---GCTPNTVNYNTVLKGLRTAGRWEDVE 277

Query: 71  DLLDRVNKEKCDITED----IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
           +L+  +  E C  +E     +  S+C+  G   R   A+R+ +KM +  C     +Y  V
Sbjct: 278 ELIAEMFSENCPPSEATLSVVISSLCQ-EGLFQR---AIRLLEKMSKHDCTANIVTYNAV 333

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           ++ L E+  +  A     +M+  G +P + + N+L+K LC N+   + A  +  +M    
Sbjct: 334 VSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLC-NAERWEDAEDLMAKMSQTD 392

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
           C PD  T+ T+I  LC+ G   +A E+FK+M  K C P  VTY+S+I GL ++  +E+++
Sbjct: 393 CLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSL 452

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            L  EM SKG  P +  Y  L + L +     +A++++  +      P  V Y+T+L GL
Sbjct: 453 ELLNEMGSKGFNPEI-NYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGL 511

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           C+ GK  +A++IL  M   G  PD   Y  +I      G  +EA   L  +
Sbjct: 512 CRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTL 562



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 166/406 (40%), Gaps = 80/406 (19%)

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS----------------- 169
           L+ LV   +L  A R           P VA  N L++ LC+                   
Sbjct: 63  LSSLVHRGELDAALRVVESSL---CPPDVALANRLVRDLCRRGRPADAARVVEACGSAAT 119

Query: 170 --------------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
                         G +D A ++   MP     P +Y Y  L++ LC  G++ +A  L  
Sbjct: 120 AVTYSALADGYCRVGRLDEARRVVDGMP---VLPSAYAYNPLMHALCVRGQVRDALVLLD 176

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            M  + C+P VVTY  L+   C+ +   +AM L + MR +G  P   TY+ +MDG+C+ G
Sbjct: 177 NMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREG 236

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNG------------------------------ 305
               A ELL  + S    PN V Y+T+L G                              
Sbjct: 237 DVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLS 296

Query: 306 -----LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
                LC+EG  Q A+ +L++M       +   Y  ++S  C+ G    A   L  M   
Sbjct: 297 VVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTD 356

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
           G  PN  T+       N +V+GLC  +    A  +   M       D LT++++I   C+
Sbjct: 357 GCKPNIFTY-------NILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQ 409

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           KG   ++  +  ++   GC P+  T+S+V+  L    KM Q+ ELL
Sbjct: 410 KGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELL 455



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 139/331 (41%), Gaps = 75/331 (22%)

Query: 203 RLGKIYEAKEL---FKEMETKACSP--------------------------------TVV 227
           RL  +    EL    + +E+  C P                                T V
Sbjct: 62  RLSSLVHRGELDAALRVVESSLCPPDVALANRLVRDLCRRGRPADAARVVEACGSAATAV 121

Query: 228 TYTSLINGLCQSKSVEEAMR--------------------------------LFEEMRSK 255
           TY++L +G C+   ++EA R                                L + M  +
Sbjct: 122 TYSALADGYCRVGRLDEARRVVDGMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYR 181

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G  P+V TY+ L++  CKG    QAMEL+ +M  +   P  VTY+ +++G+C+EG +  A
Sbjct: 182 GCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYA 241

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
            E+L+ +   G  P+   Y  ++      G++++    + EM      P+  T S+    
Sbjct: 242 RELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSV---- 297

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
              V+  LC+     RA ++   M     + + +TY+++++  C++G +  +  ++  + 
Sbjct: 298 ---VISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQ 354

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            DGC P+  T++ ++  L +  +   A +L+
Sbjct: 355 TDGCKPNIFTYNILVKGLCNAERWEDAEDLM 385



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 17/249 (6%)

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           ++ L     ++ A+R+ E   S    P+V   + L+  LC+ G  + A  +++   S   
Sbjct: 63  LSSLVHRGELDAALRVVE---SSLCPPDVALANRLVRDLCRRGRPADAARVVEACGSA-- 117

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
               VTYS L +G C+ G+L EA  ++D M +    P A  Y  ++   C  G+ ++A  
Sbjct: 118 -ATAVTYSALADGYCRVGRLDEARRVVDGMPVL---PSAYAYNPLMHALCVRGQVRDALV 173

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYS 411
            LD M+  G  P+ +T+       N +++  CK    R A ++   MR    +  ++TY+
Sbjct: 174 LLDNMLYRGCAPDVVTY-------NILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYN 226

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            ++   C++GD+  +  +++ L   GC P+   ++ V+  L    +     EL+      
Sbjct: 227 VIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSE 286

Query: 472 KCVEAEVDI 480
            C  +E  +
Sbjct: 287 NCPPSEATL 295


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 175/329 (53%), Gaps = 12/329 (3%)

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M + G QP V +  VL++A+CK+SG    A  +  EM  +GCTP+  TY  +ING+CR G
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSG-FGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREG 236

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ +AKE+   + +    P +V+YT+++ GLC ++  ++   LF EM  K   PN  T+ 
Sbjct: 237 RVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFD 296

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            L+   C+GG   +A+++LQ M      PN    + ++N +CK+G++ +A + L+ M + 
Sbjct: 297 MLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMY 356

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC- 384
           G  PD   Y  ++   C  G+++ A   L EMV     PN +T+       NT +  LC 
Sbjct: 357 GCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTF-------NTFICILCQ 409

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           K    +A ++   M     SV  +TY++L+  FC +G +  +  + + L    C P+  T
Sbjct: 410 KGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTIT 466

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++ ++T L    ++  AAELL   +   C
Sbjct: 467 YTTLLTGLCHAERLDAAAELLAEMIQKDC 495



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 171/330 (51%), Gaps = 4/330 (1%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   + +  +++I+ +    +   A D L+ +    C+     + ++ RG  R  R   
Sbjct: 321 HGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEH 380

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +  +M    C P   ++ T + IL ++  ++ A +    M E G    + + N L+ 
Sbjct: 381 AKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVH 440

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C   G +D+A ++F  +P   C P++ TY TL+ GLC   ++  A EL  EM  K C 
Sbjct: 441 GFCVQ-GRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCP 496

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              VT+  L++  CQ   VEEAM L  +M   G  PN+ T+++L+DG+ K   S +A+EL
Sbjct: 497 LNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALEL 556

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  ++SK    + +TYS++++ L +E + +EA+++L  ++  G++P  G+Y KI+   C 
Sbjct: 557 LHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCK 616

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
             +  +A +F   MV  G  PN  T+ + I
Sbjct: 617 RCETDQAIDFFAYMVSNGCMPNESTYIILI 646



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 208/468 (44%), Gaps = 89/468 (19%)

Query: 83  ITEDIFL-SICR--GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139
           +T  + L ++C+  G+G      +AM V D+M+  GC P   +Y  ++  +  E ++  A
Sbjct: 188 VTYTVLLEAVCKSSGFG------EAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 241

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCK-------------------------------- 167
                 +   G QP + S   ++K LC                                 
Sbjct: 242 KEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRF 301

Query: 168 --NSGTMDAAFKIFREMPNRGCT-----------------------------------PD 190
               G ++ A ++ ++M   GCT                                   PD
Sbjct: 302 FCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPD 361

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           + +Y T++ GLCR G+   AKEL  EM  K C P  VT+ + I  LCQ   +E+A++L E
Sbjct: 362 TISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIE 421

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            M   G    + TY++L+ G C  G    A+EL   +  +   PN +TY+TLL GLC   
Sbjct: 422 LMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAE 478

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +L  A E+L  M  +    +A  +  ++S FC  G  +EA   +++M+  G TPN +T+ 
Sbjct: 479 RLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITF- 537

Query: 371 LHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 NT++ G+ K  +   A ++   + ++ +S+D++TYSS++    ++    ++ ++
Sbjct: 538 ------NTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQM 591

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           +  +   G  P  G ++ ++ AL  R +  QA +     + N C+  E
Sbjct: 592 LHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNE 639



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 225/444 (50%), Gaps = 21/444 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSI-CRGYGRVHR 100
           GF+ D  +++ ++  L +A ++   + L   +  +KC   ++T D+ +   CRG G V R
Sbjct: 252 GFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRG-GMVER 310

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A++V  +M + GC P       V+  + ++ ++  A+ F  +M   G  P   S   
Sbjct: 311 ---AIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTT 367

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +++ LC+ +G  + A ++  EM  + C P+  T+ T I  LC+ G I +A +L + M   
Sbjct: 368 VLRGLCR-AGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEY 426

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            CS  +VTY +L++G C    V+ A+ LF  +     EPN  TY++L+ GLC       A
Sbjct: 427 GCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAA 483

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  MI K    N VT++ L++  C++G ++EA+E++++M   G  P+   +  ++  
Sbjct: 484 AELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDG 543

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMR 399
                  +EA   L  +V  G++ + +T+S       +VV  L + D    A Q+  +++
Sbjct: 544 ITKDCNSEEALELLHGLVSKGVSLDTITYS-------SVVDVLSREDRTEEAIQMLHAVQ 596

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +  +      Y+ ++   CK+ +  ++      +V +GC+P+E T+  ++  L     ++
Sbjct: 597 DMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLK 656

Query: 460 QAAELLLLELMNKCVEAEVDIQNQ 483
           + A  +L EL  K V ++  +++Q
Sbjct: 657 E-ARYVLSELYAKGVLSKSLLEDQ 679



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           M+  G  P+ +T+++       +++ +CK+     A  V   MR +  + + +TY+ +I 
Sbjct: 178 MLQRGCQPSVVTYTV-------LLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIIN 230

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
             C++G +  +  I++ L   G  PD  +++ V+  L   R+      L    +  KCV 
Sbjct: 231 GMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVP 290

Query: 476 AEV 478
            EV
Sbjct: 291 NEV 293


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 194/384 (50%), Gaps = 17/384 (4%)

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           +L+    ++ DI   +F  I   Y       DA+  +   KE        +   VL  L+
Sbjct: 59  ILETKGTQRSDIY--VFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLM 116

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +    KL + FY    E G    +   N+L+ + CK  G +  A  +F  +   G  P  
Sbjct: 117 KLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKE-GEIRLAQSVFDAITKWGLRPSV 175

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            ++ TL+NG  +LG + E   L K M+     P V TY+ LINGLC+   +++   LF+E
Sbjct: 176 VSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDE 235

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M   G+ PN  T+++L+DG CK G    AME+ + M+S+   P++VTY+TL+ GLCK+G 
Sbjct: 236 MLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGD 295

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           L++A +++D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  + + ++ 
Sbjct: 296 LKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYT- 354

Query: 372 HIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                  ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKGD+   +
Sbjct: 355 ------ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKGDVWTGS 405

Query: 428 RIVDELVLDGCLPDEGTWSAVMTA 451
           +++ E+  DG +P   T++ +M  
Sbjct: 406 KLMKEMQRDGYVPSVVTYNVLMNG 429



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 148/287 (51%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++       + R A+ + D + K     +   F ++  GY ++    +  R+   M+
Sbjct: 143 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQ 202

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++      +  M + G+ P   +   LI   CKN G +
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKN-GRV 261

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++  +PD  TY TLI GLC+ G + +A++L  EM  K   P  +TYT+L
Sbjct: 262 DLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 321

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   +E A      M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 322 IDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 381

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P I TY+ ++N  CK+G +    +++  M+  G  P    Y  +++
Sbjct: 382 KPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMN 428



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 137/285 (48%), Gaps = 11/285 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           K  G+  A F    E   +G    D Y +  +I      G + +A E ++  +       
Sbjct: 47  KGKGSASAVFAAILE--TKGTQRSDIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVP 104

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             T   ++  L + K  +     +EE    G   +++ ++ LM   CK G    A  +  
Sbjct: 105 FDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFD 164

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +     RP++V+++TL+NG  K G L E   +   M+  G++PD   Y  +I+  C   
Sbjct: 165 AITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKES 224

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
           K  +     DEM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+S
Sbjct: 225 KMDDXNELFDEMLDXGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLS 277

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++LI   CKKGD+ ++  ++DE+ + G  PD+ T++ ++
Sbjct: 278 PDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 322



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 131/251 (52%), Gaps = 9/251 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L++  C+   +  A  +F+ +   G+ P+V ++++LM+G  K G  ++   L + M 
Sbjct: 143 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQ 202

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +   +P++ TYS L+NGLCKE K+ +  E+ D M   GL P+   +  +I   C  G+  
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVD 262

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A     +M+   ++P+ +T+       NT++ GLCK  D  +A  +   M  + +  D 
Sbjct: 263 LAMEIYKQMLSQSLSPDLVTY-------NTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 315

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TY++LI   CK+GD+  +      ++ +    D+  ++A+++ L    +    AE +L 
Sbjct: 316 ITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGR-SVDAEKMLR 374

Query: 468 ELMNKCVEAEV 478
           E+++  ++ E+
Sbjct: 375 EMLSVGLKPEI 385


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 156/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  PT  S+ T++   +    L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM + G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  + EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY    E G    +   N+L+   CK  G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWGFYEDSLECGYPASLYFFNILMHRFCKE-GEIKLAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P + ++ TL+NG  RLG + E   L   M+     P V TY+ LINGLC+   ++ A
Sbjct: 166 GLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF EM   G+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKG
Sbjct: 346 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG +P
Sbjct: 396 DVWTGSKLMKEMQRDGYVP 414



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 153/275 (55%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++  C+ G+I  A+ +F  +      PT V++ +L+NG  +   ++E  RL   
Sbjct: 137 YFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A EL   M+     PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +DEM + G+ P+++T++ 
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYT- 315

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK  D   AF+    M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  P+ GT++ ++     +  +   ++L+
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLM 404



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 136/285 (47%), Gaps = 11/285 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           K  G+  A F    E   +G    D Y +  LI      G + +A E ++  +       
Sbjct: 43  KGQGSASAVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVP 100

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             T   ++  L + K  +     +E+    G   +++ ++ LM   CK G    A  +  
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYEDSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFD 160

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +     RP  V+++TL+NG  + G L E   + + M+  G++PD   Y  +I+  C   
Sbjct: 161 AITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKES 220

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
           K   A    +EM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+S
Sbjct: 221 KMDYANELFNEMLDNGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++LI   CKKGD+ ++  ++DE+ + G  PD+ T++ ++
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLI 318



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 128/251 (50%), Gaps = 9/251 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L++  C+   ++ A  +F+ +   G+ P   ++++LM+G  + G   +   L   M 
Sbjct: 139 FNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQ 198

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +   +P++ TYS L+NGLCKE K+  A E+ + M   GL P+   +  +I   C  G+  
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A     +M+   ++P+ +T+       NT++ GLCK  D  +A  +   M  + +  D 
Sbjct: 259 LAMEIYKQMLSQSLSPDLITY-------NTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TY++LI   CK+GD+  +      ++ +    D+  ++A+++ L    +    AE +L 
Sbjct: 312 VTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR-SVDAEKMLR 370

Query: 468 ELMNKCVEAEV 478
           E+++  ++ E+
Sbjct: 371 EMLSVGLKPEI 381



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/292 (19%), Positives = 130/292 (44%), Gaps = 26/292 (8%)

Query: 193 TYGTLINGLCRLGKIYEAKELFKE-----------------METKACSPT-VVTYTSLIN 234
           +Y T+I+ LC    + EAK L +                  +ETK    + +  ++ LI 
Sbjct: 15  SYCTMIHFLCTHQMLPEAKTLIQIVVSRKGQGSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
              +S  + +A+  +   +         T   +++ L K           +  +   +  
Sbjct: 75  AYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEDSLECGYPA 134

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++  ++ L++  CKEG+++ A  + D +   GL+P A  +  +++ +  +G   E     
Sbjct: 135 SLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSL 413
           + M   G+ P+  T+S+       ++ GLCK +  + A +++  M +  +  + +T+++L
Sbjct: 195 NAMQASGVQPDVYTYSV-------LINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTL 247

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I   CK G +  +  I  +++     PD  T++ ++  L  +  ++QA +L+
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 158/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A  +F EM ++G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+ FTY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWXGSKLLKEMQRDGYKPSVVT 418



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY    E G    +   N+L+ +  K  G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKE-GEIRLAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  +LG + E   L   M+     P V TY+ LINGLC+   +++A
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  +
Sbjct: 286 LCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKG
Sbjct: 346 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG  P
Sbjct: 396 DVWXGSKLLKEMQRDGYKP 414



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 152/275 (55%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++   + G+I  A+ +F  +      P+VV++ +L+NG  +   + E  RL   
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A  L   M+ K   PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +DEM++ G+ P++ T++ 
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYT- 315

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK  D   AF+    M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  P+ GT++ ++     +  +   ++LL
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLL 404



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 11/285 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           K  G+  A F    E   +G    D Y +  LI      G + +A E ++  +       
Sbjct: 43  KGKGSASAVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVP 100

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             T   ++  L + K  +     +EE    G   +++ ++ LM    K G    A  +  
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFD 160

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I+  C   
Sbjct: 161 AITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKES 220

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
           K  +A    DEM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+S
Sbjct: 221 KMDDANVLFDEMLDKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++LI   CKKGD+ ++  ++DE+++ G  PD+ T++ ++
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLI 318


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 180/327 (55%), Gaps = 9/327 (2%)

Query: 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199
            +    MR+ G  P + + NV++  +C+  G +D A +    +P+ G  P++ +Y  ++ 
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQ-EGRVDDAMEFLENLPSYGGEPNTVSYNIVLK 59

Query: 200 GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
           GL    +  +A++L +EM  K C P VVT+  LI+ LC+   VE AM + E++   G  P
Sbjct: 60  GLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTP 119

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           N  +Y+ L+   CK     +AM  +++M+S+   P+IV+Y+TLL  LC+ G++  A+++L
Sbjct: 120 NSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLL 179

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
            ++K +G  P    Y  +I      GK +EA   LDEM+  G+ P+ +T++       T+
Sbjct: 180 HQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYT-------TI 232

Query: 380 VQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
             GLC+ D    A + +  +++  I    + Y++++   CK+ + H +  +   ++ +GC
Sbjct: 233 ASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGC 292

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
           +P+E T++ ++  L     +++A +LL
Sbjct: 293 MPNESTYTILVEGLAYEGLVKEARDLL 319



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 176/318 (55%), Gaps = 11/318 (3%)

Query: 72  LLDRVNKEKCD---ITEDIFLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
           LLD +  + C    IT ++ L+ IC+  GRV    DAM   + +  +G EP   SY  VL
Sbjct: 3   LLDEMRDKGCAPDIITYNVVLNGICQ-EGRVD---DAMEFLENLPSYGGEPNTVSYNIVL 58

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
             L    + + A +    M   G  P V + N+LI  LC+  G ++ A ++  ++P  GC
Sbjct: 59  KGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRR-GLVEPAMEVLEQIPKYGC 117

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           TP+S +Y  L++  C+  K+ +A    + M ++ C P +V+Y +L+  LC++  V+ A+ 
Sbjct: 118 TPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAID 177

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L  +++ KG  P + +Y++++DGL K G + +A+ELL  MISK  +P+I+TY+T+ +GLC
Sbjct: 178 LLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLC 237

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           +E K++EA+    +++  G++P   LY  I+   C   +   A +    M+  G  PN  
Sbjct: 238 REDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNES 297

Query: 368 TWSLHIRIHNTVVQGLCK 385
           T++  I +     +GL K
Sbjct: 298 TYT--ILVEGLAYEGLVK 313



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 158/319 (49%), Gaps = 1/319 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++++++ +    +   A + L+ +     +     +  + +G     R  DA
Sbjct: 11  GCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDA 70

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++ ++M   GC P   ++  +++ L     ++ A      + + G  P   S N L+ A
Sbjct: 71  EKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHA 130

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK    MD A      M +RGC PD  +Y TL+  LCR G++  A +L  +++ K CSP
Sbjct: 131 FCKQK-KMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSP 189

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +++Y ++I+GL ++   +EA+ L +EM SKG++P++ TY+++  GLC+     +A+   
Sbjct: 190 VLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTF 249

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +     RP +V Y+ +L GLCK  +   A+++   M   G  P+   Y  ++      
Sbjct: 250 CKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYE 309

Query: 345 GKYQEAANFLDEMVLGGIT 363
           G  +EA + L ++   G+ 
Sbjct: 310 GLVKEARDLLGQLCSRGVV 328



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           M+L +EMR KG  P++ TY+ +++G+C+ G    AME L+ + S    PN V+Y+ +L G
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           L    + ++A ++++ M  +G  P+   +  +IS  C  G  + A   L+++   G TPN
Sbjct: 61  LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPN 120

Query: 366 RLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            L++       N ++   CK    ++A      M +R    D ++Y++L+T  C+ G++ 
Sbjct: 121 SLSY-------NPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVD 173

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            +  ++ +L   GC P   +++ V+  L    K ++A E LL E+++K ++ ++
Sbjct: 174 VAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALE-LLDEMISKGLQPDI 226



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 102/203 (50%), Gaps = 8/203 (3%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K ++KA+   +   +    G   D  +++ +++ L    +   A DLL ++  + C   
Sbjct: 134 QKKMDKAMAFVELMVSR---GCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPV 190

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + ++  G  +  +  +A+ + D+M   G +P   +Y T+ + L  E++++ A R + 
Sbjct: 191 LISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFC 250

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            ++++GI+P V   N ++  LCK   T + A  +F  M + GC P+  TY  L+ GL   
Sbjct: 251 KVQDMGIRPTVVLYNAILLGLCKRRETHN-AIDLFSYMISNGCMPNESTYTILVEGLAYE 309

Query: 205 GKIYEAKELFKEMETKACSPTVV 227
           G + EA++L  ++    CS  VV
Sbjct: 310 GLVKEARDLLGQL----CSRGVV 328


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 200/372 (53%), Gaps = 13/372 (3%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPLDA 104
           R +  T++ +I+   S  + + A D++ R  +E+  I  +   + ++  G+ +V R  +A
Sbjct: 511 RPNAVTYNTVIAGFCSRGRVQAALDIM-REMRERGGIAPNQYTYGTVISGWCKVGRVDEA 569

Query: 105 MRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           ++VFD+M   G  +P    Y  ++    ++ +L  A  +   M E G+   VA+ N+L+ 
Sbjct: 570 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 629

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL  + G    A+++  EM  +G  PD +TY  LING C+ G + +A E+F+ M  +   
Sbjct: 630 ALFMD-GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR 688

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            TVVTYT+LI  L +   V+E  +LF+E   +G+ P++  Y++L++     G   +A E+
Sbjct: 689 ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEI 748

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M  KR  P+ VTY+TL+ GLC  G++ EA +++D M  +G++PD   Y  +IS +  
Sbjct: 749 MGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSM 808

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G  ++A    +EM+  G  P  LT+       N ++QGLCK    + A  +   M    
Sbjct: 809 KGDVKDALRIRNEMMNKGFNPTLLTY-------NALIQGLCKNGQGDDAENMVKEMVENG 861

Query: 403 ISVDSLTYSSLI 414
           I+ D  TY SLI
Sbjct: 862 ITPDDSTYISLI 873



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 207/422 (49%), Gaps = 19/422 (4%)

Query: 38  ATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           A A +A+ FR       +TF++M+  L SA +   A +LL ++ +        +    C 
Sbjct: 467 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFC- 525

Query: 94  GYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-I 151
             GRV   LD MR   +M+E  G  P   +Y TV++   +  ++  A + +  M   G +
Sbjct: 526 SRGRVQAALDIMR---EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 582

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P     N LI   C + G +D A      M  RG      TY  L++ L   G+  EA 
Sbjct: 583 KPEAVMYNALIGGYC-DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 641

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           EL +EM  K  +P V TY  LING C+  +V++A+ +FE M  +GV   V TY++L+  L
Sbjct: 642 ELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYAL 701

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
            K G   +  +L    + +  RP++V Y+ L+N     G +  A EI+  M+ + + PD 
Sbjct: 702 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 761

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNR 390
             Y  ++   C +G+  EA   +DEM   GI P+ +T+       NT++ G   K D   
Sbjct: 762 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY-------NTLISGYSMKGDVKD 814

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A ++   M N+  +   LTY++LI   CK G    +  +V E+V +G  PD+ T+ +++ 
Sbjct: 815 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 874

Query: 451 AL 452
            L
Sbjct: 875 GL 876



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 175/323 (54%), Gaps = 10/323 (3%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEA 210
           +P   + N +I   C + G + AA  I REM  RG   P+ YTYGT+I+G C++G++ EA
Sbjct: 511 RPNAVTYNTVIAGFC-SRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 569

Query: 211 KELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            ++F EM TK    P  V Y +LI G C    ++ A+   + M  +GV   V TY+ L+ 
Sbjct: 570 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 629

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            L   G  ++A EL++ M  K   P++ TY+ L+NG CKEG +++A+EI + M  +G++ 
Sbjct: 630 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 689

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
               Y  +I      G+ QE     DE V  GI P+ + ++  I  H+T        + +
Sbjct: 690 TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHST------SGNID 743

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           RAF++   M  + I+ D +TY++L+   C  G + ++ +++DE+   G  PD  T++ ++
Sbjct: 744 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 803

Query: 450 TALWDRRKMRQAAELLLLELMNK 472
           +    +  ++ A   +  E+MNK
Sbjct: 804 SGYSMKGDVKDALR-IRNEMMNK 825



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 137/261 (52%), Gaps = 5/261 (1%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVF 108
           +T++L++  L    +   A +L++ +  +   +  D+F    +  G+ +      A+ +F
Sbjct: 622 ATYNLLVHALFMDGRGTEAYELVEEMGGKG--LAPDVFTYNILINGHCKEGNVKKALEIF 679

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M   G   T  +Y  ++  L ++ Q++   + +      GI+P +   N LI +    
Sbjct: 680 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS-HST 738

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           SG +D AF+I  EM  +   PD  TY TL+ GLC LG++ EA++L  EM  +   P +VT
Sbjct: 739 SGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVT 798

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y +LI+G      V++A+R+  EM +KG  P + TY++L+ GLCK G    A  +++ M+
Sbjct: 799 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMV 858

Query: 289 SKRHRPNIVTYSTLLNGLCKE 309
                P+  TY +L+ GL  E
Sbjct: 859 ENGITPDDSTYISLIEGLTTE 879



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 30/271 (11%)

Query: 210 AKELFKEM--ETKACSPTVV------TYTSLINGLCQSKSV----EEAMRLFEEMRSKGV 257
           A  LFK +    KA SP  V        +SL N L  + +       ++RL+  M+S  +
Sbjct: 389 ALALFKSVLSADKALSPLAVLPHLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSL 448

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
             +  +   L+  L     S+ A  L   M   R      T++ +L  LC  GK   A+E
Sbjct: 449 PISTASLHPLLSALP----SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALE 504

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM-VLGGITPNRLTWSLHIRIH 376
           +L +M     +P+A  Y  +I+ FC  G+ Q A + + EM   GGI PN+ T+       
Sbjct: 505 LLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTY------- 553

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            TV+ G CK    + A +V+  M  +  +  +++ Y++LI  +C +G +  +    D +V
Sbjct: 554 GTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMV 613

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G      T++ ++ AL+   +  +A EL+
Sbjct: 614 ERGVAMTVATYNLLVHALFMDGRGTEAYELV 644



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 4/192 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           +T +T   ++  +  +  V +   +FD A      G R D   ++ +I+   ++     A
Sbjct: 689 ATVVTYTALIYALSKKGQVQETDKLFDEAVRR---GIRPDLVLYNALINSHSTSGNIDRA 745

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
            +++  + K++    +  + ++ RG   + R  +A ++ D+M E G +P   +Y T+++ 
Sbjct: 746 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 805

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
              +  +K A R    M   G  P + + N LI+ LCKN G  D A  + +EM   G TP
Sbjct: 806 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN-GQGDDAENMVKEMVENGITP 864

Query: 190 DSYTYGTLINGL 201
           D  TY +LI GL
Sbjct: 865 DDSTYISLIEGL 876


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 216/426 (50%), Gaps = 15/426 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHRP 101
           G   D  ++++++  L  A     A +  + +     +   +T +I  +  R  G +   
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLIS-- 357

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A +V  +M   G  P   +Y  ++    +   ++ +F+    M   G++  + +  VL
Sbjct: 358 -GAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVL 416

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           + +LCK SG +D A  +  EM   G  PD  TY  LI+GLC+ G + EA EL++EM +K 
Sbjct: 417 LSSLCK-SGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKR 475

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P     +++I+GL +  ++ EA   F+ +    V   +  Y+ ++DG  K G   +A+
Sbjct: 476 IYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAV 535

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
              + +I K   P IVT+++L+ G CK+GKL EAV++LD +K+ GL P +  Y  +++ +
Sbjct: 536 RSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGY 595

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
           C+ G      + L EM    I P ++T+++       VV+GLCK    + + Q+   M  
Sbjct: 596 CEEGDMHSMFDMLHEMEAKAIKPTQITYTV-------VVKGLCKEGRLHESVQLLKYMYA 648

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R +  D +TY+++I  FCK  D+ K+ ++ ++++     P   T++ ++  L     ++ 
Sbjct: 649 RGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKD 708

Query: 461 AAELLL 466
           A  LL+
Sbjct: 709 ADRLLV 714



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 222/468 (47%), Gaps = 44/468 (9%)

Query: 33  VIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92
           +++D      A+G   +  T  ++I  L   ++ + A   L     E+   +   F ++ 
Sbjct: 218 IMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALM 277

Query: 93  RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ 152
            G+ ++     A   F  M ++G  P   SY  +L  L     ++ A  F   M   G++
Sbjct: 278 SGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVE 337

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P + + N+L     +  G +  A+K+ + M   G  PD  TY  LI G C++G I E+ +
Sbjct: 338 PDIVTYNILANGF-RILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFK 396

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           L ++M ++    ++VTYT L++ LC+S  ++EA+ L  EM   G++P++ TYS L+ GLC
Sbjct: 397 LKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLC 456

Query: 273 KGGCSSQAMELLQMMISKRHRPN-----------------------------------IV 297
           K G   +A+EL + M SKR  PN                                   I+
Sbjct: 457 KRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEII 516

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            Y+ +++G  K G + EAV    ++  +G+ P    +  +I  FC  GK  EA   LD +
Sbjct: 517 LYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTI 576

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
            + G+ P  +T++       T++ G C+  D +  F +   M  ++I    +TY+ ++  
Sbjct: 577 KVHGLVPTSVTYT-------TLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKG 629

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            CK+G +H+S +++  +   G  PD+ T++ V+ +      +++A +L
Sbjct: 630 LCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQL 677



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 221/455 (48%), Gaps = 58/455 (12%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ANGFR         I  L+S         LL+ +N +    T    + IC G+ ++    
Sbjct: 347 ANGFR---------ILGLISGAWKVVQRMLLNGLNPDLVTYT----ILIC-GHCQMGNIE 392

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           ++ ++ +KM   G + +  +Y  +L+ L +  ++  A      M  IG++P + + +VLI
Sbjct: 393 ESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLI 452

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYT----------------------------- 193
             LCK  G ++ A +++ EM ++   P+S+                              
Sbjct: 453 HGLCKR-GAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDV 511

Query: 194 ------YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                 Y  +I+G  +LG I EA   +K++  K  SPT+VT+ SLI G C+   + EA++
Sbjct: 512 AEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVK 571

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L + ++  G+ P   TY++LM+G C+ G      ++L  M +K  +P  +TY+ ++ GLC
Sbjct: 572 LLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLC 631

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           KEG+L E+V++L  M  +GL PD   Y  +I  FC     Q+A    ++M+   + P+ +
Sbjct: 632 KEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPV 691

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+       N ++ GLC   +   A ++ ++++++SI +  + Y+++I   C KGD+  +
Sbjct: 692 TY-------NVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNA 744

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
                ++V  G       +SAV+  L  R  +  A
Sbjct: 745 LVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDA 779



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/528 (25%), Positives = 232/528 (43%), Gaps = 83/528 (15%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           Q+L  +R +   + AL +FD    EY  GFRH   ++ ++   +    Q +    +L+++
Sbjct: 85  QILLSLRVDNS-DSALFLFDLLRNEY--GFRHSRVSWFIVSHVVARKGQSKELRRVLNQM 141

Query: 77  NKEK------------------CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEP 118
            +E+                   D+   ++  +   Y R     DA+ V  KMK    + 
Sbjct: 142 VEEEGSGSAPSLCELLCNSFRDWDLNNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQV 201

Query: 119 TPKSYITVL----------------------------AILVE----ENQLKLAFRFYRHM 146
           +  +Y ++L                             IL++    +++L+ A  F R  
Sbjct: 202 SIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRET 261

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
                 P V S N L+   CK  G++D A   F  M   G  PD Y+Y  L++GLC  G 
Sbjct: 262 GGEEFGPSVVSFNALMSGFCK-MGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGS 320

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + EA E   +ME     P +VTY  L NG      +  A ++ + M   G+ P++ TY+ 
Sbjct: 321 MEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTI 380

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+ G C+ G   ++ +L + M+S+  + +IVTY+ LL+ LCK G++ EAV +L  M++ G
Sbjct: 381 LICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIG 440

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL--------------- 371
           LKPD   Y  +I   C  G  +EA    +EM    I PN    S                
Sbjct: 441 LKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQ 500

Query: 372 -------------HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
                         I ++N ++ G  K  +   A + Y  +  + IS   +T++SLI  F
Sbjct: 501 MYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGF 560

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           CKKG + ++ +++D + + G +P   T++ +M    +   M    ++L
Sbjct: 561 CKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDML 608



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 184/400 (46%), Gaps = 15/400 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+S++I  L        A +L + +  ++      +  +I  G        +A
Sbjct: 440 GLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEA 499

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              FD + +         Y  ++    +   +  A R Y+ + E GI P + + N LI  
Sbjct: 500 QMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYG 559

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +  A K+   +   G  P S TY TL+NG C  G ++   ++  EME KA  P
Sbjct: 560 FCKK-GKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKP 618

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T +TYT ++ GLC+   + E+++L + M ++G+ P+  TY++++   CK     +A +L 
Sbjct: 619 TQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLH 678

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+    +P+ VTY+ L+NGLC  G L++A  +L  ++ Q ++     Y  II   C  
Sbjct: 679 NQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAK 738

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRN 400
           G  Q A  F  +MV  G       + + IR ++ V+  LCK    TD    F + L+   
Sbjct: 739 GDVQNALVFFHQMVERG-------FEVSIRDYSAVINRLCKRNLITDAKFFFCMMLT--- 788

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
             I  D      ++  F + GD +    I   ++  G LP
Sbjct: 789 HGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 211/426 (49%), Gaps = 13/426 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAED-LLDRVNKEKC---DITEDIFLSICRGYGRVHR 100
           G+R D+   + +++ L    +   A D LL R+ +  C    ++ +I L       R   
Sbjct: 124 GWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEE 183

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            L+ + +    + + C P   SY TV+     E Q+   +  +  M + GI P V +   
Sbjct: 184 ALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTT 243

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I  LCK +   D A  +F++M + G  P+  TY  LI+G   +GK  E   + +EM   
Sbjct: 244 VIDGLCK-AQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAG 302

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P   TY SL+N LC++    EA   F+ M  KG++P+V TY  ++ G    G  S+ 
Sbjct: 303 GPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEM 362

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +LL +M++    PN   ++   +   K G + +A++I ++M+ QGL PDA  YG +I  
Sbjct: 363 HDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDA 422

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
            C +G+  +A    ++M+  G+TP+ + +S       ++V GLC  D   +  +++  M 
Sbjct: 423 LCKLGRVDDAEVKFNQMINEGVTPDIVVFS-------SLVYGLCTVDKWEKVEELFFEML 475

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N  I  + + +++++   CK+G + +  R+VD +   G  PD  +++ ++        + 
Sbjct: 476 NVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTID 535

Query: 460 QAAELL 465
           +A++LL
Sbjct: 536 EASKLL 541



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 219/441 (49%), Gaps = 21/441 (4%)

Query: 34  IFDSATAEYA----NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN----KEKCDITE 85
           +FD A A +     NG + +  T++ +I   +S  +++    +L+ ++    K  C    
Sbjct: 253 LFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYG 312

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +   +C+  GR     +A   FD M   G +P+  +Y  +L     +  L         
Sbjct: 313 SLLNYLCKN-GRCR---EARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNL 368

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   GI P     N+   A  K  G +D A  IF +M  +G +PD+ +YG LI+ LC+LG
Sbjct: 369 MVANGISPNHHIFNIFFSAYAK-CGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLG 427

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ +A+  F +M  +  +P +V ++SL+ GLC     E+   LF EM + G+ PN+  ++
Sbjct: 428 RVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFN 487

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +++  LCK G   +   L+  +     RP++++Y+TL++G C  G + EA ++L+ M   
Sbjct: 488 TILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSV 547

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GLKPD+  Y  ++  +C  G+   A +   +M+  GITP  +T+       NT++ GL +
Sbjct: 548 GLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTY-------NTILHGLFQ 600

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           T   + A ++YL+M N     D  TY+ ++   CK   + ++ ++   L   G   +  T
Sbjct: 601 TKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIIT 660

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           ++ ++ AL    +   A +L 
Sbjct: 661 FNIMIGALLKGGRKEDAMDLF 681



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 185/395 (46%), Gaps = 37/395 (9%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   +Y  ++        L+  F  +  + + G +     +N L+  LC      +A   
Sbjct: 92  PNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDV 151

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM---ETKACSPTVVTYTSLIN 234
           + + MP  GC PD+ +Y  L+ GLC   +  EA EL   M   +  +C P VV+Y+++IN
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G      V++   LF EM  +G+ P+V TY++++DGLCK     +A  + Q MI    +P
Sbjct: 212 GFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP 271

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           NI TY+ L++G    GK +E V +L+ M   G KP+   YG +++  C  G+ +EA  F 
Sbjct: 272 NIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFF 331

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-------------TDPN------------ 389
           D M+  GI P+  T+   I +H    +G                  PN            
Sbjct: 332 DSMIGKGIKPSVTTYG--IMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYA 389

Query: 390 ------RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
                 +A  ++  MR + +S D+++Y +LI   CK G +  +    ++++ +G  PD  
Sbjct: 390 KCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIV 449

Query: 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
            +S+++  L    K  +  E L  E++N  +   +
Sbjct: 450 VFSSLVYGLCTVDKWEKVEE-LFFEMLNVGIHPNI 483



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 224/469 (47%), Gaps = 42/469 (8%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           ++KA+ IF+    +   G   D  ++  +I  L    +   AE   +++  E   +T DI
Sbjct: 394 IDKAMDIFNKMRQQ---GLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINE--GVTPDI 448

Query: 88  --FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             F S+  G   V +      +F +M   G  P    + T+L  L +E ++    R    
Sbjct: 449 VVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDS 508

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           +  +G++P V S N LI   C  +GT+D A K+   M + G  PDS++Y TL++G C+ G
Sbjct: 509 IECMGVRPDVISYNTLIDGHCL-AGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAG 567

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +I  A   F++M +   +P VVTY ++++GL Q+K   EA  L+  M + G + +++TY+
Sbjct: 568 RIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYN 627

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            +++GLCK  C  +A+++ Q + SK  + NI+T++ ++  L K G+ ++A+++   +   
Sbjct: 628 IILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN 687

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GL  +   Y  ++    + G  +E  +    M   G  PN    +  +R      + L +
Sbjct: 688 GLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVR------RLLHR 741

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH--------------------- 424
            D +RA      +  R+ SV++ T S LI+ F      H                     
Sbjct: 742 GDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALI 801

Query: 425 KSARIVD-------ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
           K AR +D       E+++ G  PD  T++ ++  L+   +  +A EL L
Sbjct: 802 KKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYL 850



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 218/503 (43%), Gaps = 77/503 (15%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V+ A V F+    E   G   D   FS ++  L + +++   E+L   +           
Sbjct: 429 VDDAEVKFNQMINE---GVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVF 485

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F +I     +  R ++  R+ D ++  G  P   SY T++        +  A +    M 
Sbjct: 486 FNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMV 545

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +G++P   S N L+   CK +G +D+A+  FR+M + G TP   TY T+++GL +  + 
Sbjct: 546 SVGLKPDSFSYNTLLHGYCK-AGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRF 604

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EAKEL+  M        + TY  ++NGLC+S  V+EA+++F+ + SKG++ N+ T++ +
Sbjct: 605 SEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIM 664

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTY---------------------------- 299
           +  L KGG    AM+L   + +     N+VTY                            
Sbjct: 665 IGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGT 724

Query: 300 ---STLLNGLCKE----GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ---- 348
              S +LN L +     G +  A   L ++  +    +A     +IS F    +YQ    
Sbjct: 725 APNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSS-DEYQHHAK 783

Query: 349 -------------------------EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
                                    +A +   EM++ G+TP+ +T+       NT++ GL
Sbjct: 784 SLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTY-------NTILHGL 836

Query: 384 CKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
            +T   + A ++YLSM N    ++  TY+ ++   CK   + ++ ++   L   G   + 
Sbjct: 837 FQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNI 896

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T++ ++ AL    +   A +L 
Sbjct: 897 ITFNIMIGALLKGGRKEDAMDLF 919



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 149/319 (46%), Gaps = 16/319 (5%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR---GYGRVH 99
           ANG   +  T+ L++  L+        + L   + K        +  ++ R     G + 
Sbjct: 686 ANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS 745

Query: 100 RPLDAMRVFDKMKEFGCEPTPKS-YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           R    +   D+ + F  E +  S  I++ +    ++  K   + YR + E          
Sbjct: 746 RAGAYLSKLDE-RNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSS------ 798

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
                AL K +  +D A+ +FREM  +G TPD  TY T+++GL + G+  EAKEL+  M 
Sbjct: 799 -----ALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMI 853

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                  + TY  ++NGLC+S  V+EA ++F+ + SKG++ N+ T++ ++  L KGG   
Sbjct: 854 NSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKE 913

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            AM+L   + +    P++VTY  +   L +EG L+E   +   M+  G   D+ L   ++
Sbjct: 914 DAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALV 973

Query: 339 SCFCDIGKYQEAANFLDEM 357
                 G    A  +L ++
Sbjct: 974 RRLLQRGDISRAGAYLSKL 992



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 199/438 (45%), Gaps = 25/438 (5%)

Query: 35   FDSATAEYAN----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
            F  A   Y N    G + D  T++++++ L  +N    A  +   +  +   +    F  
Sbjct: 604  FSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNI 663

Query: 91   ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
            +     +  R  DAM +F  +   G      +Y  V+  L+EE  L+     +  M + G
Sbjct: 664  MIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNG 723

Query: 151  IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
              P    LN L++ L  + G +  A     ++  R  + ++ T   LI+        + A
Sbjct: 724  TAPNSQMLNALVRRLL-HRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHA 782

Query: 211  KELFKEME--TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
            K L K+     +A S  ++          +++ +++A  LF EM  KG+ P+V TY++++
Sbjct: 783  KSLPKKYRILNEANSSALIK---------KARRIDDAYSLFREMLMKGLTPDVVTYNTIL 833

Query: 269  DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
             GL + G  S+A EL   MI+ R + NI TY+ +LNGLCK   + EA ++   +  +GL+
Sbjct: 834  HGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQ 893

Query: 329  PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
             +   +  +I      G+ ++A +    +   G+ P+ +T+ L       V + L +   
Sbjct: 894  LNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRL-------VAENLIEEGS 946

Query: 389  NRAFQ-VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
               F  ++L+M      +DS   ++L+    ++GDI ++   + +L  +     E + ++
Sbjct: 947  LEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLD-EKNFSLEASTTS 1005

Query: 448  VMTALWDRRKMRQAAELL 465
             + +L+ R + +  A+ L
Sbjct: 1006 ELISLFSRGEYQHHAKSL 1023



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 122/272 (44%), Gaps = 22/272 (8%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKS-------VEEAMRLFEEMRSK---GVE 258
           +A +LF E+   A   +VV +  L+  + +S          E  + LF  M       V 
Sbjct: 32  DALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIKVA 91

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PN  TYS L+   C+ G          +++    R + +  + LLNGLC   ++ EA+++
Sbjct: 92  PNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDV 151

Query: 319 -LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV---LGGITPNRLTWSLHIR 374
            L RM   G  PD   Y  ++   C+  + +EA   L  M    +    PN +++S    
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYS---- 207

Query: 375 IHNTVVQG-LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              TV+ G   +   ++ + ++L M +R I  D +TY+++I   CK     ++  +  ++
Sbjct: 208 ---TVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQM 264

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +G  P+  T++ ++       K ++   +L
Sbjct: 265 IDNGVKPNIDTYNCLIHGYLSIGKWKEVVRML 296


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 172/334 (51%), Gaps = 16/334 (4%)

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
           FY  + + G    V   N+L+   CK     DA  K+F E+  R   P   ++ TLING 
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQ-KVFDEITKRSLQPTVVSFNTLINGY 285

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C++G + E   L  +ME     P V TY++LIN LC+   ++ A  LF+EM  +G+ PN 
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPND 345

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             +++L+ G  + G      E  Q M+SK  +P+IV Y+TL+NG CK G L  A  I+D 
Sbjct: 346 VIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDG 405

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  +GL+PD   Y  +I  FC  G  + A     EM   GI  +R+ +S        +V 
Sbjct: 406 MIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFS-------ALVC 458

Query: 382 GLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           G+CK     D  RA +    M    I  D +TY+ ++  FCKKGD     +++ E+  DG
Sbjct: 459 GMCKEGRVIDAERALR---EMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDG 515

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            +P   T++ ++  L    +M+  A++LL  ++N
Sbjct: 516 HVPSVVTYNVLLNGLCKLGQMKN-ADMLLDAMLN 548



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 170/319 (53%), Gaps = 9/319 (2%)

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +E  +  A + +  + +  +QP V S N LI   CK  G +D  F++  +M      PD 
Sbjct: 252 KEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCK-VGNLDEGFRLKHQMEKSRTRPDV 310

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           +TY  LIN LC+  K+  A  LF EM  +   P  V +T+LI+G  ++  ++     +++
Sbjct: 311 FTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQK 370

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M SKG++P++  Y++L++G CK G    A  ++  MI +  RP+ +TY+TL++G C+ G 
Sbjct: 371 MLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGD 430

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           ++ A+EI   M   G++ D   +  ++   C  G+  +A   L EM+  GI P+ +T+++
Sbjct: 431 VETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTM 490

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                  ++   CK  D    F++   M++       +TY+ L+   CK G +  +  ++
Sbjct: 491 -------MMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLL 543

Query: 431 DELVLDGCLPDEGTWSAVM 449
           D ++  G +PD+ T++ ++
Sbjct: 544 DAMLNIGVVPDDITYNTLL 562



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 185/382 (48%), Gaps = 10/382 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +   F+++++K         A+ + D + K     T   F ++  GY +V    + 
Sbjct: 235 GFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEG 294

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+  +M++    P   +Y  ++  L +EN++  A   +  M + G+ P       LI  
Sbjct: 295 FRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHG 354

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             +N G +D   + +++M ++G  PD   Y TL+NG C+ G +  A+ +   M  +   P
Sbjct: 355 HSRN-GEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRP 413

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             +TYT+LI+G C+   VE A+ + +EM   G+E +   +S+L+ G+CK G    A   L
Sbjct: 414 DKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERAL 473

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+    +P+ VTY+ +++  CK+G  Q   ++L  M+  G  P    Y  +++  C +
Sbjct: 474 REMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKL 533

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
           G+ + A   LD M+  G+ P+ +T+       NT+++G  +     + + Y+      I 
Sbjct: 534 GQMKNADMLLDAMLNIGVVPDDITY-------NTLLEGHHRH--ANSSKRYIQKPEIGIV 584

Query: 405 VDSLTYSSLITCFCKKGDIHKS 426
            D  +Y S++    +    H++
Sbjct: 585 ADLASYKSIVNELDRASKDHRN 606



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 104/229 (45%), Gaps = 4/229 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G + D   ++ +++          A +++D + +      +  + ++  G+ R     
Sbjct: 373 SKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVE 432

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+ +  +M + G E     +  ++  + +E ++  A R  R M   GI+P   +  +++
Sbjct: 433 TALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMM 492

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A CK  G     FK+ +EM + G  P   TY  L+NGLC+LG++  A  L   M     
Sbjct: 493 DAFCK-KGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGV 551

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
            P  +TY +L+ G    +    + R  ++    G+  ++ +Y S+++ L
Sbjct: 552 VPDDITYNTLLEG--HHRHANSSKRYIQK-PEIGIVADLASYKSIVNEL 597


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/484 (27%), Positives = 226/484 (46%), Gaps = 71/484 (14%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T +L+I+ L  + +F  A ++ D++  + C   E  F  + RGY R    + A
Sbjct: 146 GVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRA 205

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + + D M  FG +P    Y T+++    E + + A R    MRE G+ P V + N  I A
Sbjct: 206 LELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISA 265

Query: 165 LCKNSGTMDAAFKIFREM---PNRGCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LC ++G +  A +IFR+M      G   P+  T+  ++ G C+ G + EAK L + M+  
Sbjct: 266 LC-SAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRN 324

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                + +Y   + GL ++  + EA    +EM  KG+EPN+++++++MDGLCK G  S A
Sbjct: 325 GNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDA 384

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA--------G 332
             ++ +MIS    P+ VTYSTLL+G C  GK+ +A  IL  M  +G  P+          
Sbjct: 385 RMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHS 444

Query: 333 LY--GKI-------------------------ISCFCDIGKYQEAANFLDEMVLGGIT-- 363
           L+  G+I                         I   C  GK  EA   ++ M + G    
Sbjct: 445 LWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAAL 504

Query: 364 ---------------------PNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
                                P+ +T+S+       ++ GLCK    + A + ++ M  +
Sbjct: 505 GNLGNSFIGLVDSSSNGKKCLPDLITYSI-------IINGLCKAGRLDEARKKFIEMVGK 557

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           S+  DS+ Y + I  FCK G I  + R++ ++   GC     T+++++  L  + ++ + 
Sbjct: 558 SLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEI 617

Query: 462 AELL 465
             LL
Sbjct: 618 YGLL 621



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 181/353 (51%), Gaps = 13/353 (3%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P    Y  VL   + E+++      Y+ M   G+ P   +LN+LI  LC +SG  + A +
Sbjct: 114 PPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLC-DSGRFEDARE 172

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +F +M  +GC P+ +++G L+ G CR G    A EL   M +    P  V Y +LI+  C
Sbjct: 173 VFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFC 232

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ-MMISKR---HR 293
           +    EEA RL E MR  G+ P+V T++S +  LC  G   +A  + + M I +     R
Sbjct: 233 REGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPR 292

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PNI T++ +L G CKEG L+EA  +++ MK  G   +   Y   +      GK  EA   
Sbjct: 293 PNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLA 352

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSS 412
           L EMV  GI PN       I   NTV+ GLCK    + A  +   M +  I  D++TYS+
Sbjct: 353 LKEMVDKGIEPN-------IYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYST 405

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           L+   C  G + K+  I+ E++  GC P+  T + ++ +LW   ++ +A +LL
Sbjct: 406 LLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLL 458



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 211/441 (47%), Gaps = 44/441 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLL------DRVNKEKCDITEDIFLSICRGYGR 97
           +G   D  TF+  IS L SA +   A  +       + +   + +IT   F  +  G+ +
Sbjct: 250 DGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNIT--TFNLMLEGFCK 307

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
                +A  + + MK  G     +SY   L  LV   +L  A    + M + GI+P + S
Sbjct: 308 EGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYS 367

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N ++  LCKN G +  A  I   M + G  PD+ TY TL++G C  GK+ +A  +  EM
Sbjct: 368 FNTVMDGLCKN-GLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEM 426

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
             + CSP   T   L++ L +   + EA +L ++M  +  + +  T + ++DGLCK G  
Sbjct: 427 MRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKL 486

Query: 278 SQAMELLQMMI-----------------------SKRHRPNIVTYSTLLNGLCKEGKLQE 314
            +A+E+++ M                         K+  P+++TYS ++NGLCK G+L E
Sbjct: 487 DEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDE 546

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A +    M  + L PD+ +Y   I  FC  GK   A   L +M   G   +       ++
Sbjct: 547 ARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKS-------LQ 599

Query: 375 IHNTVVQGLCKTDPNRAFQVYL---SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
            +N+++ GL     N+ F++Y     M+ + I+ +  TY+++I+C C+ G I  +  ++D
Sbjct: 600 TYNSLILGL--GSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLD 657

Query: 432 ELVLDGCLPDEGTWSAVMTAL 452
           E++  G  P+  ++  ++ A 
Sbjct: 658 EMLQKGISPNISSFRLLIKAF 678



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 227/496 (45%), Gaps = 70/496 (14%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R +  +F +++     A     A +LLD +        + I+ ++   + R  R  +A
Sbjct: 181 GCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEA 240

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR---EIGI-QPCVASLNV 160
            R+ ++M+E G  P   ++ + ++ L    ++  A R +R M+   E+G+ +P + + N+
Sbjct: 241 ERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNL 300

Query: 161 LIKALCKN----------------------------------SGTMDAAFKIFREMPNRG 186
           +++  CK                                   +G +  A    +EM ++G
Sbjct: 301 MLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKG 360

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             P+ Y++ T+++GLC+ G I +A+ +   M +    P  VTY++L++G C +  V +A 
Sbjct: 361 IEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKAN 420

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            +  EM  +G  PN +T + L+  L K G   +A +LLQ M  + +  + VT + +++GL
Sbjct: 421 NILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGL 480

Query: 307 CKEGKLQEAVEILDRMKLQGLK-----------------------PDAGLYGKIISCFCD 343
           CK GKL EAVEI++ M + G                         PD   Y  II+  C 
Sbjct: 481 CKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCK 540

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
            G+  EA     EMV   + P+ +       I++T +   CK    + AF+V   M  R 
Sbjct: 541 AGRLDEARKKFIEMVGKSLHPDSI-------IYDTFIHSFCKHGKISSAFRVLKDMEKRG 593

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
            +    TY+SLI     K  I +   ++D++   G  P+  T++ +++ L +  +++ A 
Sbjct: 594 CNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDAT 653

Query: 463 ELLLLELMNKCVEAEV 478
             LL E++ K +   +
Sbjct: 654 S-LLDEMLQKGISPNI 668



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/536 (23%), Positives = 227/536 (42%), Gaps = 87/536 (16%)

Query: 15  SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLD 74
           ++++  L  A K +  + +  D    E     R + +TF+LM+           A+ L++
Sbjct: 260 NSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVE 319

Query: 75  RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
            + +    +  + +     G  R  + L+A     +M + G EP   S+ TV+  L +  
Sbjct: 320 SMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNG 379

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
            +  A      M   GI P   + + L+   C ++G +  A  I  EM  RGC+P++YT 
Sbjct: 380 LISDARMIMGLMISSGIGPDTVTYSTLLHGCC-STGKVLKANNILHEMMRRGCSPNTYTC 438

Query: 195 GTL-----------------------------------INGLCRLGKIYEAKELFKEM-- 217
             L                                   I+GLC+ GK+ EA E+ + M  
Sbjct: 439 NILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWI 498

Query: 218 ---------------------ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
                                  K C P ++TY+ +INGLC++  ++EA + F EM  K 
Sbjct: 499 HGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKS 558

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           + P+   Y + +   CK G  S A  +L+ M  +    ++ TY++L+ GL  + ++ E  
Sbjct: 559 LHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIY 618

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI- 375
            +LD MK +G+ P+   Y  +ISC C+ G+ ++A + LDEM+  GI+PN  ++ L I+  
Sbjct: 619 GLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAF 678

Query: 376 ---------------------HNTVVQG------LCKTDPNRAFQVYLSMRNRSISVDSL 408
                                H   +        L   + + A +++ +  +R   + + 
Sbjct: 679 CKASDFGVVKEVFEIALSICGHKEALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGNF 738

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            Y+ LI   CK   +  ++ I+ +++  G   D  ++  V+  L  R K   A EL
Sbjct: 739 QYNDLIEKLCKDEMLENASDILHKMIDKGYRFDPASFMPVIDGLGKRGKKHDADEL 794



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 149/303 (49%), Gaps = 15/303 (4%)

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNR--GCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           SL  LI+ L K SG  D AF  F+   ++     P  Y Y  ++    R  K+     L+
Sbjct: 81  SLIALIRILAK-SGLSDLAFSQFQSFRSQVPANPPPVYLYNMVLESSLREDKVDSFSWLY 139

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           K+M     SP   T   LI GLC S   E+A  +F++M  KG  PN F++  L+ G C+ 
Sbjct: 140 KDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRA 199

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G S +A+ELL  M S   +PN V Y+TL++  C+EG+ +EA  +++RM+  GL PD   +
Sbjct: 200 GLSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTF 259

Query: 335 GKIISCFCDIGKYQEAANFLDEMV----LGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
              IS  C  GK  EA+    +M     LG   PN  T+       N +++G CK     
Sbjct: 260 NSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTF-------NLMLEGFCKEGMLE 312

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A  +  SM+     ++  +Y+  +    + G + ++   + E+V  G  P+  +++ VM
Sbjct: 313 EAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVM 372

Query: 450 TAL 452
             L
Sbjct: 373 DGL 375



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 135/275 (49%), Gaps = 10/275 (3%)

Query: 52  TFSLMISKLVSANQFRPA-EDLLDRVNK--EKCDITEDIFL-SICRGYGRVHRPLDAMRV 107
           T+S++I+ L  A +   A +  ++ V K      I  D F+ S C+ +G++     A RV
Sbjct: 530 TYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCK-HGKIS---SAFRV 585

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
              M++ GC  + ++Y +++  L  +NQ+   +     M+E GI P + + N +I  LC+
Sbjct: 586 LKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCE 645

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G +  A  +  EM  +G +P+  ++  LI   C+       KE+F E+    C     
Sbjct: 646 -GGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVKEVF-EIALSICGHKEA 703

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            Y+ + N L     V EA  LF+    +  +   F Y+ L++ LCK      A ++L  M
Sbjct: 704 LYSLMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDILHKM 763

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           I K +R +  ++  +++GL K GK  +A E+ +RM
Sbjct: 764 IDKGYRFDPASFMPVIDGLGKRGKKHDADELAERM 798



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 6/242 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D+  +   I       +   A  +L  + K  C+ +   + S+  G G  ++  +   + 
Sbjct: 562 DSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLL 621

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D MKE G  P   +Y  +++ L E  ++K A      M + GI P ++S  +LIKA CK 
Sbjct: 622 DDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKA 681

Query: 169 S--GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           S  G +   F+I   +    C      Y  + N L   G++ EAKELF     +      
Sbjct: 682 SDFGVVKEVFEIALSI----CGHKEALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGN 737

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
             Y  LI  LC+ + +E A  +  +M  KG   +  ++  ++DGL K G    A EL + 
Sbjct: 738 FQYNDLIEKLCKDEMLENASDILHKMIDKGYRFDPASFMPVIDGLGKRGKKHDADELAER 797

Query: 287 MI 288
           M+
Sbjct: 798 MM 799



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 99/198 (50%), Gaps = 10/198 (5%)

Query: 271 LCKGGCSSQAMELLQMMISK--RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           L K G S  A    Q   S+   + P +  Y+ +L    +E K+     +   M + G+ 
Sbjct: 89  LAKSGLSDLAFSQFQSFRSQVPANPPPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVS 148

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           P+      +I+  CD G++++A    D+M + G  PN  ++ +       +V+G C+   
Sbjct: 149 PETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGI-------LVRGYCRAGL 201

Query: 389 N-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
           + RA ++   M +  +  + + Y++LI+ FC++G   ++ R+V+ +  DG  PD  T+++
Sbjct: 202 SMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNS 261

Query: 448 VMTALWDRRKMRQAAELL 465
            ++AL    K+ +A+ + 
Sbjct: 262 RISALCSAGKILEASRIF 279


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 184/352 (52%), Gaps = 11/352 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  +M+     P   SY TV+    E  +L+ A      M+  G    + +  +LI 
Sbjct: 161 AVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILID 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A CK +G MD A    +EM   G   D   Y +LI G C  G++   K LF E+  +  S
Sbjct: 221 AFCK-AGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDS 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  +TY +LI G C+   ++EA  +FE M  +GV PNV+TY+ L+DGLC  G + +A++L
Sbjct: 280 PCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQL 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +MI K   PN VTY+ ++N LCK+G + +AVEI++ MK +  +PD   Y  ++   C 
Sbjct: 340 LNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCA 399

Query: 344 IGKYQEAANFLDEMVLGG--ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
            G   EA+  L  M+       P+ +++       N ++ GLCK +  ++A  +Y  +  
Sbjct: 400 KGDLDEASKLLYLMLKDSSYTDPDVISY-------NALIHGLCKENRLHQALDIYDLLVE 452

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +  + D +T + L+    K GD++K+  +  ++     + +  T++A++   
Sbjct: 453 KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 200/378 (52%), Gaps = 9/378 (2%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++ RG+        A+ + ++MK  GC  +  ++  ++    +  ++  A  F + M+ +
Sbjct: 182 TVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFM 241

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G++  +     LI+  C + G +D    +F E+  RG +P + TY TLI G C+LG++ E
Sbjct: 242 GLEADLVVYTSLIRGFC-DCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKE 300

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A E+F+ M  +   P V TYT LI+GLC     +EA++L   M  K  EPN  TY+ +++
Sbjct: 301 ASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIIN 360

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG--L 327
            LCK G  + A+E++++M  +R RP+ +TY+ LL GLC +G L EA ++L  M       
Sbjct: 361 KLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYT 420

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            PD   Y  +I   C   +  +A +  D +V      +R+T   +I +++T+  G    D
Sbjct: 421 DPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVT--TNILLNSTLKAG----D 474

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            N+A +++  + +  I  +S TY+++I  FCK G ++ +  ++ ++ +    P    ++ 
Sbjct: 475 VNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNC 534

Query: 448 VMTALWDRRKMRQAAELL 465
           ++++L     + QA  L 
Sbjct: 535 LLSSLCKEGSLDQAWRLF 552



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 198/426 (46%), Gaps = 11/426 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           N    D  +++ +I       +   A +L + +    C  +   +  +   + +  +  +
Sbjct: 171 NSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDE 230

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM    +MK  G E     Y +++    +  +L      +  + E G  PC  + N LI+
Sbjct: 231 AMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G +  A +IF  M  RG  P+ YTY  LI+GLC +GK  EA +L   M  K   
Sbjct: 291 GFCK-LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEE 349

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY  +IN LC+   V +A+ + E M+ +   P+  TY+ L+ GLC  G   +A +L
Sbjct: 350 PNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKL 409

Query: 284 LQMMI--SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           L +M+  S    P++++Y+ L++GLCKE +L +A++I D +  +    D      +++  
Sbjct: 410 LYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNST 469

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
              G   +A     ++    I  N  T++        ++ G CKT   N A  +   MR 
Sbjct: 470 LKAGDVNKAMELWKQISDSKIVRNSDTYT-------AMIDGFCKTGMLNVAKGLLCKMRV 522

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +      Y+ L++  CK+G + ++ R+ +E+  D   PD  +++ ++        ++ 
Sbjct: 523 SELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKS 582

Query: 461 AAELLL 466
           A  LL+
Sbjct: 583 AESLLV 588



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 170/346 (49%), Gaps = 9/346 (2%)

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
            ++A LV     +LAF FYR M E        SL+ L++   +   T   AF +   M  
Sbjct: 77  NLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKT-GFAFGVLALMLK 135

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           RG   + Y +  L+ GLCR  +  +A  L +EM   +  P V +Y ++I G C+ K +E+
Sbjct: 136 RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A+ L  EM+  G   ++ T+  L+D  CK G   +AM  L+ M       ++V Y++L+ 
Sbjct: 196 ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIR 255

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G C  G+L     + D +  +G  P A  Y  +I  FC +G+ +EA+   + M+  G+ P
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRP 315

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           N  T++        ++ GLC     + A Q+   M  +    +++TY+ +I   CK G +
Sbjct: 316 NVYTYT-------GLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLV 368

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
             +  IV+ +      PD  T++ ++  L  +  + +A++LL L L
Sbjct: 369 ADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLML 414



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 163/327 (49%), Gaps = 11/327 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKCDITEDIFLS-ICRGYGRVHR 100
           G R +  T++ +I  L    + + A  LL+ +   ++E   +T +I ++ +C+  G V  
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKD-GLVA- 369

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF-YRHMREIG-IQPCVASL 158
             DA+ + + MK+    P   +Y  +L  L  +  L  A +  Y  +++     P V S 
Sbjct: 370 --DAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISY 427

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N LI  LCK +  +  A  I+  +  +    D  T   L+N   + G + +A EL+K++ 
Sbjct: 428 NALIHGLCKEN-RLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQIS 486

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                    TYT++I+G C++  +  A  L  +MR   ++P+VF Y+ L+  LCK G   
Sbjct: 487 DSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLD 546

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           QA  L + M    + P++V+++ +++G  K G ++ A  +L  M   GL PD   Y K+I
Sbjct: 547 QAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLI 606

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPN 365
           + F  +G   EA +F D+MV  G  P+
Sbjct: 607 NRFLKLGYLDEAISFFDKMVDSGFEPD 633



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 145/284 (51%), Gaps = 7/284 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRPLDAMRVF 108
           T++++I+KL        A ++++ + K +    +IT +I L      G +      + + 
Sbjct: 354 TYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLM 413

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCK 167
            K   +  +P   SY  ++  L +EN+L  A   Y  + E +G    V + N+L+ +  K
Sbjct: 414 LKDSSY-TDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTT-NILLNSTLK 471

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
            +G ++ A ++++++ +     +S TY  +I+G C+ G +  AK L  +M      P+V 
Sbjct: 472 -AGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVF 530

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            Y  L++ LC+  S+++A RLFEEM+     P+V +++ ++DG  K G    A  LL  M
Sbjct: 531 DYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGM 590

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
                 P++ TYS L+N   K G L EA+   D+M   G +PDA
Sbjct: 591 SRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 179/343 (52%), Gaps = 13/343 (3%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN---RGCTPDSYTYGTLING 200
           R M E+G  P V S N L+K  C +    + A ++   M +   R C P+  +Y T+ING
Sbjct: 155 RRMSELGCTPNVVSYNTLLKGFC-DENRAEEALELLHMMADGQVRSCPPNLVSYNTVING 213

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
               G++ +A  LF +M  +   P VVTYT +I+GLC+++ V+ A  +F++M  KGV PN
Sbjct: 214 FFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPN 273

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           + TY+ L+ G    G   + + +L+ M +    P+  TY  LL+ LCK+GK  EA ++ D
Sbjct: 274 IVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFD 333

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M  +G+KPD  +YG I+  +   G   E  +FLD MV  GI+PN         I N V 
Sbjct: 334 SMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHY-------IFNIVF 386

Query: 381 QGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
               K      A  ++  MR + +S + + Y++LI   CK G +  +    ++++ +G  
Sbjct: 387 CAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVA 446

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           P+   +++++  L    K  +A E L  E++N+ +   V   N
Sbjct: 447 PNIVVFTSLVYGLCTIDKWEKAGE-LFFEMVNQGIHPNVVFFN 488



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 200/398 (50%), Gaps = 12/398 (3%)

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF---GCEPTPKSYITVLA 128
           LL R+++  C      + ++ +G+   +R  +A+ +   M +     C P   SY TV+ 
Sbjct: 153 LLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVIN 212

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
               E Q+  A+  +  M + GI P V +  ++I  LCK +  +D A  +F++M ++G  
Sbjct: 213 GFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCK-AQVVDRAEGVFQQMIDKGVR 271

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  TY  LI+G   +G+  E   + KEM      P   TY  L++ LC+     EA +L
Sbjct: 272 PNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKL 331

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F+ M  KG++P+V  Y  ++ G    G  S+    L +M+     PN   ++ +     K
Sbjct: 332 FDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAK 391

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           +  + EA++I ++M+ QGL P+   Y  +I   C +G+  +A    ++M+  G+ PN   
Sbjct: 392 KAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPN--- 448

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
               I +  ++V GLC  D   +A +++  M N+ I  + + +++++   C +G + K+ 
Sbjct: 449 ----IVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQ 504

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           R++D +   G  PD  +++A++       K  +A++LL
Sbjct: 505 RLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLL 542



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 198/419 (47%), Gaps = 9/419 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G   D  T+ L++  L    +   A  L D + ++       I+  I  GY       
Sbjct: 302 AHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALS 361

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +     D M   G  P    +  V     ++  +  A   +  MR+ G+ P V +   LI
Sbjct: 362 EMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLI 421

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            ALCK     DA  K F +M N G  P+   + +L+ GLC + K  +A ELF EM  +  
Sbjct: 422 DALCKLGRVDDAELK-FNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGI 480

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV + +++  LC    V +A RL + M   G  P++ +Y++L+ G C  G + +A +
Sbjct: 481 HPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASK 540

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL +M+S   +PN  TY+TLL+G C++G++ +A  +   M   G+ P    Y  I+    
Sbjct: 541 LLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLF 600

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
              ++ EA     E+ L  IT  +  WS++   +N ++ GL K +  + A +++ S+ ++
Sbjct: 601 KTRRFSEA----KELYLNMITSGK-QWSIY--TYNIILNGLSKNNCVDEALKMFQSLCSK 653

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
            + VD +T++ +I    K G    +  +   +  +G +PD  T+  +   L +   + +
Sbjct: 654 DLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEE 712



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 196/399 (49%), Gaps = 10/399 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           + +A+ IF+    +   G   +   ++ +I  L    +   AE   +++  E       +
Sbjct: 395 IGEAMDIFNKMRQQ---GLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVV 451

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F S+  G   + +   A  +F +M   G  P    + T++  L  E ++  A R    M 
Sbjct: 452 FTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLME 511

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +G +P + S N LI+  C   G  D A K+   M + G  P+  TY TL++G CR G+I
Sbjct: 512 RVGTRPDIISYNALIRGHCL-VGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRI 570

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  +F+EM +   +P VVTY ++++GL +++   EA  L+  M + G + +++TY+ +
Sbjct: 571 DDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNII 630

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++GL K  C  +A+++ Q + SK  + +I+T++ ++  L K+G+ ++A+ +   +   GL
Sbjct: 631 LNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGL 690

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            PD   Y  I     + G  +E      EM   G  PN L  +  +R      + L + D
Sbjct: 691 VPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVR------RLLLRGD 744

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
            +RA      +  ++ S+++ T S LI+ F ++    KS
Sbjct: 745 ISRAGAYLSKIDEKNFSLEASTTSMLISLFSREEHQAKS 783


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 211/412 (51%), Gaps = 12/412 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI-FLSICRGYGRVHRPLDAMRVFDK 110
            ++ MI    SA +F  A  LL+R  K K  I   I +  I    G+  R  +A+R+F++
Sbjct: 337 AYNTMIMGYGSAGKFDEAYGLLER-QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEE 395

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           MK       P +Y  ++ +L  E +L  A      M   G+ P V ++N++I  LCK + 
Sbjct: 396 MKRDAVPNVP-TYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCK-AQ 453

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++ A  IF  M ++ CTP++ T+ +LI+GL + G++ +A  L+++M      P  + YT
Sbjct: 454 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYT 513

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           SLI    +    E+  ++++EM   G  P++   ++ MD + K G + +   L + + + 
Sbjct: 514 SLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAH 573

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P+  +YS L++GL K G   E  E+   MK QG   D   Y  +I  FC  GK  +A
Sbjct: 574 GFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKA 633

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
              L+EM + G  P  +T+        +V+ GL K D  + A+ ++   ++  I ++ + 
Sbjct: 634 YQLLEEMKVKGHPPTVVTYG-------SVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVV 686

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           YSSLI  F K G I ++  I++EL+  G  P+  TW+ ++ AL    ++ +A
Sbjct: 687 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEA 738



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 218/449 (48%), Gaps = 12/449 (2%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++ ++  E  +N AL I D        G   +  T ++MI +L  A +   A  + + ++
Sbjct: 410 LIDMLCREGKLNAALEIRDDMERA---GLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMD 466

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
            + C      F S+  G G+  R  DA  +++KM + G  P    Y +++    +  + +
Sbjct: 467 DKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKE 526

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
              + Y+ M   G  P +  +N  +  + K +G  +    +FRE+   G  PD+ +Y  L
Sbjct: 527 DGHKIYKEMVHTGCSPDLTLINTYMDCVFK-AGETEKGRALFREINAHGFIPDARSYSIL 585

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+GL + G   E  ELF  M+ + C      Y ++I+G C+S  V +A +L EEM+ KG 
Sbjct: 586 IHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH 645

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P V TY S++DGL K     +A  L +   S   + N+V YS+L++G  K G++ EA  
Sbjct: 646 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYL 705

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           I++ +  +GL P+   +  ++       +  EA      M      PN++T+S+      
Sbjct: 706 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSI------ 759

Query: 378 TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++ GLC+    N+AF  +  M+   +  +++TY+++I+   K G+I +++ +      +
Sbjct: 760 -LINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKAN 818

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           G +PD  +++A++  L    K   A  L 
Sbjct: 819 GGIPDSASYNAMIEGLSSANKAMDAYALF 847



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 189/377 (50%), Gaps = 9/377 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ S+ R + +  R  D  +++ +M   GC P      T +  + +  + +     +R +
Sbjct: 511 VYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREI 570

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G  P   S ++LI  L K +G  +  +++F  M  +GC  D++ Y  +I+G C+ GK
Sbjct: 571 NAHGFIPDARSYSILIHGLVK-AGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 629

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A +L +EM+ K   PTVVTY S+I+GL +   ++EA  LFEE +S G++ NV  YSS
Sbjct: 630 VNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 689

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DG  K G   +A  +++ ++ K   PN+ T++ LL+ L K  ++ EA+     MK   
Sbjct: 690 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 749

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             P+   Y  +I+  C + K+ +A  F  EM   G+ PN +T++       T++ GL K 
Sbjct: 750 CPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYT-------TMISGLAKA 802

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            +   A  ++   +      DS +Y+++I           +  + +E  L GC     T 
Sbjct: 803 GNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTC 862

Query: 446 SAVMTALWDRRKMRQAA 462
             ++ AL     + QAA
Sbjct: 863 VVLLDALHKAECLEQAA 879



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 207/457 (45%), Gaps = 45/457 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG-YGRVHRPLD 103
           G+  +   F+ +I       +   A  LLD +     D  + +  ++C   +G+  +   
Sbjct: 225 GYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLD-ADIVLYNVCIDCFGKAGKVDM 283

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           + + F +MK  G  P   +Y +++ +L + N+L  A   +  + +    PC  + N +I 
Sbjct: 284 SWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIM 343

Query: 164 ALCKNSGTMDAAF-----------------------------------KIFREMPNRGCT 188
               ++G  D A+                                   +IF EM  R   
Sbjct: 344 GY-GSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM-KRDAV 401

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  TY  LI+ LCR GK+  A E+  +ME     P V+T   +I+ LC+++ +EEA  +
Sbjct: 402 PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSI 461

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           FE M  K   PN  T+SSL+DGL K G    A  L + M+   H P  + Y++L+    K
Sbjct: 462 FEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFK 521

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G+ ++  +I   M   G  PD  L    + C    G+ ++      E+   G  P+  +
Sbjct: 522 CGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARS 581

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +S  I IH  V  GL     N  ++++ +M+ +   +D+  Y+++I  FCK G ++K+ +
Sbjct: 582 YS--ILIHGLVKAGLA----NETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQ 635

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++E+ + G  P   T+ +V+  L    ++ +A  L 
Sbjct: 636 LLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLF 672



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 165/348 (47%), Gaps = 10/348 (2%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           R+ ++M   G  P+    I ++A  V+  +L+ AF   + MR+   +P  ++  +LI AL
Sbjct: 146 RILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGAL 205

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            +     D    +F +M   G   + + + TLI    R G++  A  L  EM++ +    
Sbjct: 206 SEVREP-DPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDAD 264

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           +V Y   I+   ++  V+ + + F EM+S G+ P+  TY+S++  LCK     +A+EL +
Sbjct: 265 IVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFE 324

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +   R  P    Y+T++ G    GK  EA  +L+R K +G  P    Y  I++C     
Sbjct: 325 QLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKR 384

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
           + +EA    +EM    + PN  T+       N ++  LC+    N A ++   M    + 
Sbjct: 385 RVEEALRIFEEMKRDAV-PNVPTY-------NILIDMLCREGKLNAALEIRDDMERAGLF 436

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            + LT + +I   CK   + ++  I + +    C P+  T+S+++  L
Sbjct: 437 PNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL 484



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 1/229 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  +I  L   ++   A  L +        +   ++ S+  G+G+V R  +A  + +++
Sbjct: 651 TYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL 710

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G  P   ++  +L  LV+  ++  A   ++ M+++   P   + ++LI  LC+    
Sbjct: 711 MQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVR-K 769

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            + AF  ++EM   G  P++ TY T+I+GL + G I EA  LF   +     P   +Y +
Sbjct: 770 FNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNA 829

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
           +I GL  +    +A  LFEE R KG   +  T   L+D L K  C  QA
Sbjct: 830 MIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 878



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 147/359 (40%), Gaps = 48/359 (13%)

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + +   G +P P+  I VL  L + N     F++     E     C  + N L+  + +N
Sbjct: 81  NSLSALGEKPLPELVIGVLKRLKDANTAVNYFQWAEKQTEK--VHCPEAYNSLLMVMARN 138

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +   D   +I  EM   G  P S     L+    +  K+ EA ++ + M      P    
Sbjct: 139 T-EFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSA 197

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT LI  L + +  +  + LF +M+  G E NV  ++                       
Sbjct: 198 YTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFT----------------------- 234

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                       TL+    +EG++  A+ +LD MK   L  D  LY   I CF   GK  
Sbjct: 235 ------------TLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVD 282

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM-RNRSISVD 406
            +  F  EM   G+ P+ +T++  I +       LCK +  + A +++  + +NR +   
Sbjct: 283 MSWKFFHEMKSHGLMPDDVTYTSMIGV-------LCKANRLDEAVELFEQLEQNRKVPC- 334

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  Y+++I  +   G   ++  +++     G +P    ++ ++T L  +R++ +A  + 
Sbjct: 335 AYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIF 393


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/483 (24%), Positives = 219/483 (45%), Gaps = 77/483 (15%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+++I  L    +   A  L  R+    C      + S+  GYG+     +   +  +M
Sbjct: 201 TFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEM 260

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           ++ GC     +Y  ++    +   ++ A+ ++  M+ +G+   V +L+  + A CK  G 
Sbjct: 261 RKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKE-GL 319

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A K+F +M  RG  P+ +TY +L++G C+ G++ +A  L  EM  +   P VVTYT 
Sbjct: 320 VREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTV 379

Query: 232 LINGLCQ-----------------------------------SKSVEEAMRLFEEMRSKG 256
           +++GLC+                                   +K+ E A+ L  EM++KG
Sbjct: 380 MVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKG 439

Query: 257 VE-----------------------------------PNVFTYSSLMDGLCKGGCSSQAM 281
           +E                                   PN   Y+++MD   K G  S+A+
Sbjct: 440 MELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAV 499

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL  +     +PN+VTY  L++GLCK G + EA+   D+M+  GL P+  +Y  +I  F
Sbjct: 500 ALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGF 559

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
           C IG   +A + ++EMV  G++ +++ ++  I  H  + QG    D   AF +   M   
Sbjct: 560 CKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGH--MKQG----DLQGAFALKAKMIET 613

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            + +D   Y+  I+ FC    + ++  ++ E++  G  PD+  ++ ++        M +A
Sbjct: 614 GLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEA 673

Query: 462 AEL 464
           + L
Sbjct: 674 SSL 676



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 185/380 (48%), Gaps = 14/380 (3%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           D  LS+   +G +    DA+R   ++++    P  ++   +L  L    Q  L  R + H
Sbjct: 137 DTLLSLLADHGLLD---DAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEH 193

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           +      P V + N++I  LCK  G +  A  +F  M   GC+PD  TY +LI+G  + G
Sbjct: 194 LP----APNVFTFNIVIDFLCKQ-GELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCG 248

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++ E + L  EM    C+  VVTY +LIN   +   +E+A   F EM+  GV  NV T S
Sbjct: 249 ELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLS 308

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           + +D  CK G   +AM+L   M  +   PN  TY++L++G CK G+L +A+ +LD M  Q
Sbjct: 309 TFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQ 368

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GL P+   Y  ++   C  GK   A + L  M   G+  N L ++  I  H         
Sbjct: 369 GLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGH------FMN 422

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            +  RA  +   M+N+ + +D   Y +LI   CK   + ++  ++ ++   G  P+   +
Sbjct: 423 KNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIY 482

Query: 446 SAVMTALWDRRKMRQAAELL 465
           + +M A +   K  +A  LL
Sbjct: 483 TTIMDAFFKAGKESEAVALL 502


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 222/469 (47%), Gaps = 49/469 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ +I  +    +   A  L D++  E        + ++  G  +V     A
Sbjct: 126 GHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAA 185

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +R+   M +  C+P   +Y T++  L ++ Q+  AF  +  M   GI P + + N LI A
Sbjct: 186 IRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHA 245

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N         +  EM +    PD  ++ T+++ LC+ GK+ EA ++  +M  +   P
Sbjct: 246 LC-NLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEP 304

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK----------- 273
            VVTYT+L++G C    ++EA+++F+ M  KG  PNV +Y++L++G CK           
Sbjct: 305 NVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYT 364

Query: 274 ----GGCS----SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
                 C      +A+++   M+ K   PN+++Y+TL+NG CK  ++ +A+ +   M  Q
Sbjct: 365 XLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQ 424

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL-------------- 371
            L PD   Y  +I   C + + Q+A     EMV     PN +T+ +              
Sbjct: 425 ELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEA 484

Query: 372 --------------HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
                          I+++N  + G+C+  +   A  ++ ++ ++ +  D  TYS +I  
Sbjct: 485 MALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMING 544

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            C++G + +++++  E+  +GC  +   ++ +        +  +A +LL
Sbjct: 545 LCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLL 593



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 193/417 (46%), Gaps = 63/417 (15%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+  F++M      P+   +  +L  + +             M   GI P + +L++LI 
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILIN 104

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           + C +   +  AF +  ++   G  PD+ T+ TLI G+C  GKI EA  LF +M  +   
Sbjct: 105 SFC-HLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFR 163

Query: 224 PTVVTYTSLING-----------------------------------LCQSKSVEEAMRL 248
           P VVTY +LING                                   LC+ + V EA  L
Sbjct: 164 PDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNL 223

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EM +KG+ P++FTY+SL+  LC          LL  M+  +  P++V+++T+++ LCK
Sbjct: 224 FSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCK 283

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           EGK+ EA +++D+M  +G++P+   Y  ++   C + +  EA    D MV  G  PN ++
Sbjct: 284 EGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVIS 343

Query: 369 WSLHIRIHNTVVQGLCKT--------------------DPNRAFQVYLSMRNRSISVDSL 408
           +       NT++ G CK                     + + A +V+ +M  +    + +
Sbjct: 344 Y-------NTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVI 396

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +Y++LI  +CK   I K+  +  E+     +PD  T+S ++  L    +++ A  L 
Sbjct: 397 SYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALF 453



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 205/437 (46%), Gaps = 39/437 (8%)

Query: 6   MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ 65
           +F ++T I S      +  ++ V +A  +F     +   G   D  T++ +I  L +  +
Sbjct: 201 VFAYNTIIDS------LCKDRQVTEAFNLFSEMVTK---GISPDIFTYNSLIHALCNLCE 251

Query: 66  FRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
           ++    LL+ +   K  I  D+  F ++     +  +  +A  V DKM + G EP   +Y
Sbjct: 252 WKHVATLLNEMVDSK--IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTY 309

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG------------- 170
             ++      +++  A + +  M   G  P V S N LI   CK                
Sbjct: 310 TALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDX 369

Query: 171 -----TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
                 MD A K+F  M  +GC P+  +Y TLING C++ +I +A  LF EM  +   P 
Sbjct: 370 XCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPD 429

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
            VTY++LI+GLC  + +++A+ LF EM +    PN+ TY  L+D LCK    ++AM LL+
Sbjct: 430 TVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLK 489

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +      P+I   +  ++G+C+ G+L+ A ++   +  +GL+PD   Y  +I+  C  G
Sbjct: 490 AIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRG 549

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
              EA+    EM   G T N         I+NT+ +G  + +  +RA Q+   M  R  S
Sbjct: 550 LLDEASKLFREMDENGCTLNGC-------IYNTITRGFLRNNETSRAIQLLQEMVARGFS 602

Query: 405 VDSLTYSSLITCFCKKG 421
            D+ T +  +      G
Sbjct: 603 ADASTMTLFVKMLSDDG 619



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 143/296 (48%), Gaps = 8/296 (2%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T+D A   F  M      P +  +  L+  + ++        L  +M++    P + T  
Sbjct: 41  TIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLH 100

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN  C    V  A  +  ++   G +P+  T+++L+ G+C  G   +A+ L   MI +
Sbjct: 101 ILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGE 160

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             RP++VTY TL+NGLCK G    A+ +L  M  +  +P+   Y  II   C   +  EA
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLT 409
            N   EMV  GI+P+  T+       N+++  LC     +     L+ M +  I  D ++
Sbjct: 221 FNLFSEMVTKGISPDIFTY-------NSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 273

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++++   CK+G + ++  +VD+++  G  P+  T++A+M       +M +A ++ 
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVF 329


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 202/437 (46%), Gaps = 75/437 (17%)

Query: 100 RPLDAMRVF-DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGI-QPCVA 156
           R  DA++V   +M E GC P   SY  VL  L ++N+ + A    R M +E G+  P V 
Sbjct: 58  RTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVV 117

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N +I    K  G +  A  ++ EM  +G  PD  T+ ++IN LC+   +  A+ L ++
Sbjct: 118 TYNTVIHGFFK-EGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQ 176

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M      P  VTYTS+I+G       EEA ++F EM  +G+ P++ +++S MD LCK G 
Sbjct: 177 MVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGR 236

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNG------------------------------- 305
           S +A E+   M +K HRPNIVTY  LL+G                               
Sbjct: 237 SKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTI 296

Query: 306 ----LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
                 K G + EA+ IL  M+ QGL PD   Y  +IS  C +G+  +A +  ++M+  G
Sbjct: 297 LIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTG 356

Query: 362 ITPNRLTW-SL----------------------------HIRIHNTVVQGLCK----TDP 388
           + PN + + SL                            +I   N++V  +CK     D 
Sbjct: 357 VQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDA 416

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           +  F +   +  RS   D + +++LI  +C  G++ K+  ++D ++  G  PD  T++ +
Sbjct: 417 HHIFDLVKDIGERS---DIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTL 473

Query: 449 MTALWDRRKMRQAAELL 465
           +   +   ++     L 
Sbjct: 474 VNGYFKSGRIDDGLNLF 490



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 203/439 (46%), Gaps = 68/439 (15%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           R  + LD +R+  K +E  C P   +Y TV+    +E ++  A   Y  M + G  P V 
Sbjct: 94  RSQQALDLLRMMAK-EEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVV 152

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N +I ALCK +  +D A  + R+M + G  P+  TY ++I+G   LG+  EA ++F+E
Sbjct: 153 THNSIINALCK-ARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFRE 211

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +   P +V++ S ++ LC+    +EA  +F  M +KG  PN+ TY  L+ G    GC
Sbjct: 212 MTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGC 271

Query: 277 SS-----------------------------------QAMELLQMMISKRHRPNIVTYST 301
            +                                   +AM +L  M  +   P++ TYST
Sbjct: 272 FADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYST 331

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           L++ LC+ G+L +AV+  ++M   G++P+  +Y  +I  FC  G   +A   + EM+  G
Sbjct: 332 LISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNG 391

Query: 362 IT-PN---------------RLTWSLHIR-------------IHNTVVQGLCKT-DPNRA 391
           I  PN               R+  + HI              + NT++ G C   +  +A
Sbjct: 392 IPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKA 451

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           F V  +M +  I  D+ TY++L+  + K G I     +  E+      P   T++ ++  
Sbjct: 452 FSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDG 511

Query: 452 LWDRRKMRQAAELLLLELM 470
           L+ R     AA+ +L E++
Sbjct: 512 LF-RAGRTVAAQKMLHEMI 529



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 192/381 (50%), Gaps = 11/381 (2%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR-FYRHMREIGIQPCV 155
           R  RP   +  F ++   G +    +  TVL  L    +   A +   R M E+G  P  
Sbjct: 20  RARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDA 79

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEAKEL 213
            S  +++K LC ++ +  A   + R M      C+PD  TY T+I+G  + GKI +A  L
Sbjct: 80  FSYAIVLKRLCDDNRSQQA-LDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNL 138

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           + EM  +   P VVT+ S+IN LC++++V+ A  L  +M   GV PN  TY+S++ G   
Sbjct: 139 YHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYST 198

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G   +A ++ + M  +   P+IV++++ ++ LCK G+ +EA EI   M  +G +P+   
Sbjct: 199 LGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVT 258

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ 393
           YG ++  +   G + +  +F + M   GI  N L +++ I  +    +G+     + A  
Sbjct: 259 YGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAK--RGMM----DEAML 312

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +   M+ + +S D  TYS+LI+  C+ G +  +    ++++  G  P+   + +++    
Sbjct: 313 ILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFC 372

Query: 454 DRRKMRQAAELLLLELMNKCV 474
               + +A E L+ E+MN  +
Sbjct: 373 THGDLVKAKE-LVYEMMNNGI 392



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 173/348 (49%), Gaps = 8/348 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           PT  +Y  V+       + +L   F+  +   G++    + N ++K LC    T DA   
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKACSPTVVTYTSLING 235
           + R M   GC PD+++Y  ++  LC   +  +A +L + M  E   CSP VVTY ++I+G
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
             +   + +A  L+ EM  +G  P+V T++S+++ LCK      A  LL+ M+     PN
Sbjct: 126 FFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPN 185

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
            VTY+++++G    G+ +EA ++   M  +GL PD   +   +   C  G+ +EAA    
Sbjct: 186 KVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFY 245

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
            M   G  PN +T+   I +H    +G C  D    F    +M+   I  + L ++ LI 
Sbjct: 246 SMAAKGHRPNIVTYG--ILLHGYATEG-CFADMMSFFN---TMKGDGIVANCLVFTILID 299

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            + K+G + ++  I+ E+   G  PD  T+S +++AL    ++  A +
Sbjct: 300 AYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVD 347



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 154/324 (47%), Gaps = 4/324 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             G   D  T+S +IS L    +   A D  +++          ++ S+ +G+   H  L
Sbjct: 319 GQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFC-THGDL 377

Query: 103 DAMR--VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              +  V++ M      P    + +++  + +E ++  A   +  +++IG +  +   N 
Sbjct: 378 VKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNT 437

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   C   G M  AF +   M + G  PD++TY TL+NG  + G+I +   LF+EM  K
Sbjct: 438 LIDGYCL-VGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDK 496

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              PT VTY  +++GL ++     A ++  EM   G   ++ TY+ ++ GLC+  C+ +A
Sbjct: 497 KIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEA 556

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + + Q + +   + NI T +T++N +    + +EA ++   +   GL P+A  YG +I  
Sbjct: 557 IVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRN 616

Query: 341 FCDIGKYQEAANFLDEMVLGGITP 364
               G  +EA N    M   G  P
Sbjct: 617 LLKEGSVEEADNMFSSMEKSGCAP 640



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 190/427 (44%), Gaps = 14/427 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITED--IFLSICRGYGRVH 99
           A G R +  T+ +++    +   F    D++   N  K D I  +  +F  +   Y +  
Sbjct: 249 AKGHRPNIVTYGILLHGYATEGCF---ADMMSFFNTMKGDGIVANCLVFTILIDAYAKRG 305

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
              +AM +  +M+  G  P   +Y T+++ L    +L  A   +  M   G+QP     +
Sbjct: 306 MMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYH 365

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCRLGKIYEAKELFKEME 218
            LI+  C + G +  A ++  EM N G   P+   + ++++ +C+ G++ +A  +F  ++
Sbjct: 366 SLIQGFCTH-GDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVK 424

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                  ++ + +LI+G C    + +A  + + M S G+ P+ FTY++L++G  K G   
Sbjct: 425 DIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRID 484

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
             + L + M  K+ +P  VTY+ +L+GL + G+   A ++L  M   G       Y  I+
Sbjct: 485 DGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIIL 544

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSM 398
              C      EA     ++    +  N  T +  I    TV +         A  ++ ++
Sbjct: 545 KGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQR------REEAKDLFSAI 598

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
            +  +  ++ TY  +I    K+G + ++  +   +   GC P     +  +  L ++ ++
Sbjct: 599 SDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGEI 658

Query: 459 RQAAELL 465
            +A   +
Sbjct: 659 VKAGNYM 665



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 130/268 (48%), Gaps = 9/268 (3%)

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           R   P  +TYG ++NG CR  +       F  +             +++  LC +K  ++
Sbjct: 2   RVAPPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDD 61

Query: 245 AMR-LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH--RPNIVTYST 301
           A++ L   M   G  P+ F+Y+ ++  LC    S QA++LL+MM  +     P++VTY+T
Sbjct: 62  AVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNT 121

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           +++G  KEGK+ +A  +   M  QG  PD   +  II+  C       A   L +MV  G
Sbjct: 122 VIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNG 181

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
           + PN++T++  I  ++T+ +         A +++  M  R +  D ++++S +   CK G
Sbjct: 182 VPPNKVTYTSMIHGYSTLGRW------EEATKMFREMTGRGLIPDIVSWNSFMDSLCKHG 235

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVM 449
              ++A I   +   G  P+  T+  ++
Sbjct: 236 RSKEAAEIFYSMAAKGHRPNIVTYGILL 263



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 126/250 (50%), Gaps = 11/250 (4%)

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +   PT+ TY  ++NG C+++  E  +  F  +   G++ +    ++++  LC    +  
Sbjct: 2   RVAPPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDD 61

Query: 280 AME-LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGL-KPDAGLYGK 336
           A++ LL+ M      P+  +Y+ +L  LC + + Q+A+++L  M K +G+  PD   Y  
Sbjct: 62  AVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNT 121

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL 396
           +I  F   GK  +A N   EM+  G  P+ +T       HN+++  LCK       ++ L
Sbjct: 122 VIHGFFKEGKIGKACNLYHEMMQQGFVPDVVT-------HNSIINALCKARAVDNAELLL 174

Query: 397 -SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M +  +  + +TY+S+I  +   G   ++ ++  E+   G +PD  +W++ M +L   
Sbjct: 175 RQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKH 234

Query: 456 RKMRQAAELL 465
            + ++AAE+ 
Sbjct: 235 GRSKEAAEIF 244



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 16/187 (8%)

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN- 352
           P I TY  ++NG C+  + +  +    R+   GLK D      ++ C C   +  +A   
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS-----ISVDS 407
            L  M   G  P+  ++++       V++ LC  D NR+ Q    +R  +      S D 
Sbjct: 66  LLRRMTELGCVPDAFSYAI-------VLKRLC--DDNRSQQALDLLRMMAKEEGVCSPDV 116

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TY+++I  F K+G I K+  +  E++  G +PD  T ++++ AL   R +   AELLL 
Sbjct: 117 VTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDN-AELLLR 175

Query: 468 ELMNKCV 474
           ++++  V
Sbjct: 176 QMVDNGV 182


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 211/412 (51%), Gaps = 12/412 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI-FLSICRGYGRVHRPLDAMRVFDK 110
            ++ MI    SA +F  A  LL+R  K K  I   I +  I    G+  R  +A+R+F++
Sbjct: 92  AYNTMIMGYGSAGKFDEAYGLLER-QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEE 150

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           MK       P +Y  ++ +L  E +L  A      M   G+ P V ++N++I  LCK + 
Sbjct: 151 MKRDAVPNVP-TYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCK-AQ 208

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            ++ A  IF  M ++ CTP++ T+ +LI+GL + G++ +A  L+++M      P  + YT
Sbjct: 209 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYT 268

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           SLI    +    E+  ++++EM   G  P++   ++ MD + K G + +   L + + + 
Sbjct: 269 SLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAH 328

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P+  +YS L++GL K G   E  E+   MK QG   D   Y  +I  FC  GK  +A
Sbjct: 329 GFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKA 388

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
              L+EM + G  P  +T+        +V+ GL K D  + A+ ++   ++  I ++ + 
Sbjct: 389 YQLLEEMKVKGHPPTVVTYG-------SVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVV 441

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           YSSLI  F K G I ++  I++EL+  G  P+  TW+ ++ AL    ++ +A
Sbjct: 442 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEA 493



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 214/442 (48%), Gaps = 12/442 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  +N AL I D        G   +  T ++MI +L  A +   A  + + ++ + C   
Sbjct: 172 EGKLNAALEIRDDMERA---GLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPN 228

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              F S+  G G+  R  DA  +++KM + G  P    Y +++    +  + +   + Y+
Sbjct: 229 AVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYK 288

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   G  P +  +N  +  + K +G  +    +FRE+   G  PD+ +Y  LI+GL + 
Sbjct: 289 EMVHTGCSPDLTLINTYMDCVFK-AGETEKGRALFREINAHGFIPDARSYSILIHGLVKA 347

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G   E  ELF  M+ + C      Y ++I+G C+S  V +A +L EEM+ KG  P V TY
Sbjct: 348 GLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTY 407

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
            S++DGL K     +A  L +   S   + N+V YS+L++G  K G++ EA  I++ +  
Sbjct: 408 GSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQ 467

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           +GL P+   +  ++       +  EA      M      PN++T+S+       ++ GLC
Sbjct: 468 KGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSI-------LINGLC 520

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           +    N+AF  +  M+   +  +++TY+++I+   K G+I +++ +      +G +PD  
Sbjct: 521 RVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSA 580

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           +++A++  L    K   A  L 
Sbjct: 581 SYNAMIEGLSSANKAMDAYALF 602



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 189/377 (50%), Gaps = 9/377 (2%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ S+ R + +  R  D  +++ +M   GC P      T +  + +  + +     +R +
Sbjct: 266 VYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREI 325

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G  P   S ++LI  L K +G  +  +++F  M  +GC  D++ Y  +I+G C+ GK
Sbjct: 326 NAHGFIPDARSYSILIHGLVK-AGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 384

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A +L +EM+ K   PTVVTY S+I+GL +   ++EA  LFEE +S G++ NV  YSS
Sbjct: 385 VNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 444

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DG  K G   +A  +++ ++ K   PN+ T++ LL+ L K  ++ EA+     MK   
Sbjct: 445 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 504

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             P+   Y  +I+  C + K+ +A  F  EM   G+ PN +T++       T++ GL K 
Sbjct: 505 CPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYT-------TMISGLAKA 557

Query: 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            +   A  ++   +      DS +Y+++I           +  + +E  L GC     T 
Sbjct: 558 GNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTC 617

Query: 446 SAVMTALWDRRKMRQAA 462
             ++ AL     + QAA
Sbjct: 618 VVLLDALHKAECLEQAA 634



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 195/425 (45%), Gaps = 76/425 (17%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK----------A 164
           G  P+    I ++A  V+  +L+ AF   + MR+   +P  ++  +LI            
Sbjct: 5   GFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWV 64

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK +  +D A ++F ++      P +Y Y T+I G    GK  EA  L +  + K   P
Sbjct: 65  LCK-ANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIP 123

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG--------- 275
           +V+ Y  ++  L + + VEEA+R+FEEM+   V PNV TY+ L+D LC+ G         
Sbjct: 124 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIR 182

Query: 276 ----------------------CSSQAME----LLQMMISKRHRPNIVTYSTLLNGLCKE 309
                                 C +Q +E    + + M  K   PN VT+S+L++GL K 
Sbjct: 183 DDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKC 242

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G++ +A  + ++M   G  P A +Y  +I  F   G+ ++      EMV  G +P+    
Sbjct: 243 GRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLI 302

Query: 370 SLHI----------------------------RIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
           + ++                            R ++ ++ GL K    N  ++++ +M+ 
Sbjct: 303 NTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE 362

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +   +D+  Y+++I  FCK G ++K+ ++++E+ + G  P   T+ +V+  L    ++ +
Sbjct: 363 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDE 422

Query: 461 AAELL 465
           A  L 
Sbjct: 423 AYMLF 427



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 1/229 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  +I  L   ++   A  L +        +   ++ S+  G+G+V R  +A  + +++
Sbjct: 406 TYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL 465

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            + G  P   ++  +L  LV+  ++  A   ++ M+++   P   + ++LI  LC+    
Sbjct: 466 MQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVR-K 524

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            + AF  ++EM   G  P++ TY T+I+GL + G I EA  LF   +     P   +Y +
Sbjct: 525 FNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNA 584

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
           +I GL  +    +A  LFEE R KG   +  T   L+D L K  C  QA
Sbjct: 585 MIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 633


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 192/369 (52%), Gaps = 11/369 (2%)

Query: 82  DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
           D+   +   +   YG      +A++VF+ M+  G  P   +   +L  L ++      ++
Sbjct: 133 DVNSHVLSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWK 192

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            Y+ M ++G+   +   NVL+ A CK SG ++ A K+  EM  +   PD +TY TLI+  
Sbjct: 193 IYKKMVKLGVVANIHVYNVLLHACCK-SGDVEKAEKVLSEMELKCVFPDLFTYNTLISLY 251

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+ G  YEA  +   ME    SP + TY SLI G C+   + EA++LF ++  K V PN 
Sbjct: 252 CKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDI--KDVTPNH 309

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY+SL+DG C+     +A+ L ++M  K   P ++TY+++L  LC+ G+L++A  +L+ 
Sbjct: 310 VTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNE 369

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  + ++PD      +I+ +C IG  + A    D+MV  G+  ++ T+         ++ 
Sbjct: 370 MSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTY-------KALIH 422

Query: 382 GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           G CK  + ++A ++   M +   S    TYS L+  +CK+ +     ++ DELV  G   
Sbjct: 423 GFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCV 482

Query: 441 DEGTWSAVM 449
           D   + A++
Sbjct: 483 DVSVYRALI 491



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 196/382 (51%), Gaps = 16/382 (4%)

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ--LKLAFRFYRHMREIGIQPCVASLN 159
           L    V   + +   +P   S++    ++V  N      A + + HMR  G +P + +  
Sbjct: 116 LSTQSVLSSLVKIHDDPDVNSHVLSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACT 175

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           VL+ +L K+  T D  +KI+++M   G   + + Y  L++  C+ G + +A+++  EME 
Sbjct: 176 VLLNSLAKDRLT-DTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMEL 234

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K   P + TY +LI+  C+     EA+ + + M   G+ P++FTY+SL+ G C+ G   +
Sbjct: 235 KCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMRE 294

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A++L + +  K   PN VTY++L++G C+   L EA+ + + M  +GL P    Y  I+ 
Sbjct: 295 AVQLFRDI--KDVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILR 352

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSM 398
             C+ G+ ++A   L+EM    I P+ +T        NT++   CK  D   A +V   M
Sbjct: 353 KLCEGGRLRDANILLNEMSERKIEPDNVTC-------NTLINAYCKIGDMRSALKVKDKM 405

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
               + +D  TY +LI  FCK  +I K+  ++  ++  G  P   T+S ++ + + +++ 
Sbjct: 406 VGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDS-YCKQQN 464

Query: 459 RQAAELLLLELMNK--CVEAEV 478
            +A   L  EL+ +  CV+  V
Sbjct: 465 EEAVIKLPDELVRRGLCVDVSV 486



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 7/311 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPLDAMR 106
           D  T++ +IS          A  + DR+  E   I+ DIF   S+  G+ R  R  +A++
Sbjct: 240 DLFTYNTLISLYCKKGMHYEALSVQDRM--EMAGISPDIFTYNSLIYGFCREGRMREAVQ 297

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           +F  +K+    P   +Y +++      N L  A R    M E G+ P V + N +++ LC
Sbjct: 298 LFRDIKD--VTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLC 355

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           +     DA   +  EM  R   PD+ T  TLIN  C++G +  A ++  +M         
Sbjct: 356 EGGRLRDANI-LLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQ 414

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            TY +LI+G C++K +++A  L   M   G  P+  TYS L+D  CK       ++L   
Sbjct: 415 FTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDE 474

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           ++ +    ++  Y  L+   CK  K+  A  +L  MK +G+  D+ +Y  +   +  +GK
Sbjct: 475 LVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGK 534

Query: 347 YQEAANFLDEM 357
               ++ LDEM
Sbjct: 535 VNVTSDILDEM 545



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 114/284 (40%), Gaps = 42/284 (14%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPL 102
           G   D  T++ +I       + R A  L   +     D+T +   + S+  GY RV+   
Sbjct: 271 GISPDIFTYNSLIYGFCREGRMREAVQLFRDIK----DVTPNHVTYTSLIDGYCRVNDLD 326

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+R+ + M E G  PT  +Y ++L  L E  +L+ A      M E  I+P   + N LI
Sbjct: 327 EALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLI 386

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI------------------------ 198
            A CK  G M +A K+  +M   G   D +TY  LI                        
Sbjct: 387 NAYCK-IGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGF 445

Query: 199 -----------NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                      +  C+        +L  E+  +     V  Y +LI   C+ + ++ A R
Sbjct: 446 SPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQR 505

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +   M+ KG+  +   Y+SL  G  K G  +   ++L  M  KR
Sbjct: 506 VLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKKR 549



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 18/268 (6%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYA-----------------NGFRHDNSTFSLMISK 59
           + +QL R  KDV    V + S    Y                   G      T++ ++ K
Sbjct: 294 EAVQLFRDIKDVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRK 353

Query: 60  LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
           L    + R A  LL+ +++ K +       ++   Y ++     A++V DKM   G +  
Sbjct: 354 LCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLD 413

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
             +Y  ++    +  ++  A      M + G  P   + + L+ + CK     +A  K+ 
Sbjct: 414 QFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNE-EAVIKLP 472

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
            E+  RG   D   Y  LI   C++ KI  A+ +   M+ K      V YTSL  G  + 
Sbjct: 473 DELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKV 532

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             V     + +EM  K +   +  Y S 
Sbjct: 533 GKVNVTSDILDEMYKKRLMITLKIYRSF 560


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 209/458 (45%), Gaps = 45/458 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +++          A  LL R+ K+    T   + ++   Y R+     A
Sbjct: 234 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQA 293

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF---------------------- 142
            +V + M   G EP   +Y  + A L +  ++  AFR                       
Sbjct: 294 TKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLAD 353

Query: 143 --------------YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
                            MRE G++  + + N++IK LCK+ G ++ A     +M + G  
Sbjct: 354 ACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKD-GELEGALGCLNKMADDGLA 412

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD  TY TLI+  C+ G I +A  L  EM  +       T  +++  LC+ K  EEA  L
Sbjct: 413 PDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGL 472

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            +    +G  P+  +Y ++M    K   S  A+ L   MI K+  P+I TY+TL+ GL +
Sbjct: 473 LQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSR 532

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G+L+EA++ L+ +  +GL PD   Y  II  +C  G  + A  F ++MV     P+ +T
Sbjct: 533 MGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVT 592

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                   NT++ GLC     ++A +++ S   +   VD +TY++LI   CK GD+  + 
Sbjct: 593 C-------NTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTAL 645

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
               ++   G  PD  T++ V++AL +  +  +A  +L
Sbjct: 646 HFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNML 683



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 180/375 (48%), Gaps = 15/375 (4%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+     M+ FG  P   +Y T+L     +  L  A      M++ G+ P   + N L+
Sbjct: 222 DALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLV 281

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME-TKA 221
            A  +  G +  A K+   M   G  PD +TY  L  GLC+ GK+ EA  L  EME    
Sbjct: 282 SAYAR-LGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGT 340

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVTY +L +   + +   +A+RL EEMR KGV+  + T++ ++ GLCK G    A+
Sbjct: 341 LLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGAL 400

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
             L  M      P+++TY+TL++  CK G + +A  ++D M  +GLK D      ++   
Sbjct: 401 GCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNL 460

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C   +Y+EA   L      G  P+ +++        TV+    K  +   A +++  M  
Sbjct: 461 CKEKRYEEAQGLLQSPPQRGFMPDEVSY-------GTVMAAYFKEYNSEPALRLWDEMIE 513

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           + ++    TY++LI    + G + ++   ++EL+  G +PD+ T++ ++ A      +  
Sbjct: 514 KKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLEN 573

Query: 461 AAELLLLELMNKCVE 475
           A      +  NK VE
Sbjct: 574 A-----FQFHNKMVE 583



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 176/376 (46%), Gaps = 26/376 (6%)

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL----AFRFYRHMREIGIQPCVA 156
           PLD +R   +        TP +     A L   ++L+L    A   +   R + ++P + 
Sbjct: 113 PLDPLRSLHRHLLGNLPSTPLAD----AALSAYSRLRLPHLAAQLLHSLRRRVRVRPSLQ 168

Query: 157 SLNVLIKALCKNSGTM-DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           + N ++ AL ++  T   A+   FR +      P+ YT+  L++  C  G + +A     
Sbjct: 169 AANAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLS 228

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            M+    SP  VTY +L+N  C+   + EA  L   M+  GV P   TY++L+    + G
Sbjct: 229 TMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLG 288

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLY 334
              QA ++++ M +    P++ TY+ L  GLC+ GK+ EA  + D M +L  L PD   Y
Sbjct: 289 WIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTY 348

Query: 335 GKI----ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
             +      C C      +A   L+EM   G+    +T       HN V++GLCK  +  
Sbjct: 349 NTLADACFKCRCS----SDALRLLEEMREKGVKATLVT-------HNIVIKGLCKDGELE 397

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A      M +  ++ D +TY++LI   CK G+I K+  ++DE+V  G   D  T + V+
Sbjct: 398 GALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVL 457

Query: 450 TALWDRRKMRQAAELL 465
             L   ++  +A  LL
Sbjct: 458 YNLCKEKRYEEAQGLL 473



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 7/354 (1%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  + D+M   G +    +  TVL  L +E + + A    +   + G  P   S   ++ 
Sbjct: 434 AYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMA 493

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A  K   + + A +++ EM  +  TP   TY TLI GL R+G++ EA +   E+  K   
Sbjct: 494 AYFKEYNS-EPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLV 552

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P   TY  +I+  C+   +E A +   +M     +P+V T ++LM+GLC  G   +A++L
Sbjct: 553 PDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKL 612

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            +  + K  + +++TY+TL+  +CK+G +  A+     M+ +GL+PDA  Y  ++S   +
Sbjct: 613 FESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSE 672

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
            G+ +EA N L ++   G      ++S  +   ++V +     D     +   + ++ + 
Sbjct: 673 AGRTEEAQNMLHKLAESGTLSQ--SFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSA- 729

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
              S  Y+ L+   C  G   ++  I+DE++  G   D  T+  +M  L  R+K
Sbjct: 730 ---SEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYITLMEGLVKRQK 780



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 1/290 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D  ++  +++         PA  L D + ++K   +   + ++ +G  R+ R  +A
Sbjct: 480 GFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEA 539

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +   +++ E G  P   +Y  ++    +E  L+ AF+F+  M E   +P V + N L+  
Sbjct: 540 IDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNG 599

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N G +D A K+F     +G   D  TY TLI  +C+ G +  A   F +ME +   P
Sbjct: 600 LCLN-GKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQP 658

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY  +++ L ++   EEA  +  ++   G     F+   L         S +  +  
Sbjct: 659 DAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTE 718

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           +  +          Y+ L+NGLC  G+ +EA  ILD M  +G+  D+  Y
Sbjct: 719 EETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTY 768


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 202/449 (44%), Gaps = 53/449 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T +L+I  L   + F     +L+ +      I    F  +   Y +      A+  F KM
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+FGC+P   +Y ++L ++V++    LA   Y  M ++   P  A+  +L+  LCKN G 
Sbjct: 158 KDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKN-GK 216

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D A K+F EM  +G  P++  Y  +++GLC+  +  +   L   M+   C P  +T  +
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++G C+   ++EA  L +    +G    +  YSSL+DGL +     +  E  + M    
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAG 336

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++V Y+ L+ G C+ G +  A+ +L+ M  +GL PD   Y  +I  FCD+G   +A 
Sbjct: 337 IEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKAR 396

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTY 410
           +   E+      P   T+++       ++ G+C+    + A Q++  M N   S   +T+
Sbjct: 397 SLQLEISKNDCFPTSCTYTI-------LICGMCRNGLLDEARQIFNQMENLGCSPSIMTF 449

Query: 411 SSLITCFCKKGDIHKSA------------------------------------------R 428
           ++LI   CK G++ ++                                           R
Sbjct: 450 NALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFR 509

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           ++D++V +GC P    +  +MT  W  RK
Sbjct: 510 VLDQMVKNGCTPSSAVYKCLMT--WSCRK 536



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 176/411 (42%), Gaps = 85/411 (20%)

Query: 129 ILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
           ++ E+ + +L FRF+    R    +  V   N++I  L K+ G  D  +KI  E+ N   
Sbjct: 70  VMREQRRPELGFRFFIWTTRRRSFRSWVTH-NLVIDMLAKDDG-FDTYWKILEELKNSNI 127

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS---------------- 231
                T+  LI    + G   +A E F +M+   C P V TY S                
Sbjct: 128 QIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALA 187

Query: 232 -------------------LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
                              L+NGLC++   ++A+++F+EM  KG+ PN   Y+ ++ GLC
Sbjct: 188 VYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLC 247

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD------------ 320
           +   +     LL  M      P+ +T + LL+G CK G++ EA  +L             
Sbjct: 248 QAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIK 307

Query: 321 -----------------------RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
                                  +M   G++PD  LY  +I  FC++G    A N L++M
Sbjct: 308 GYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT---DPNRAFQVYLSMRNRSISVDSLTYSSLI 414
              G++P+   +       N +++G C     D  R+ Q+ +S +N      S TY+ LI
Sbjct: 368 TQRGLSPDTYCY-------NALIKGFCDVGLLDKARSLQLEIS-KNDCFPT-SCTYTILI 418

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              C+ G + ++ +I +++   GC P   T++A++  L    ++ +A  L 
Sbjct: 419 CGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLF 469



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 152/371 (40%), Gaps = 55/371 (14%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V+ AL + +  T     G   D   ++ +I           A  L   ++K  C  T   
Sbjct: 357 VDYALNMLNDMTQR---GLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCT 413

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  +  G  R     +A ++F++M+  GC P+  ++  ++  L +  +L+ A   +  M 
Sbjct: 414 YTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM- 472

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAA------------FKIFREMPNRGCTPDSYTYG 195
           EIG  P     ++ ++        MD A            F++  +M   GCTP S  Y 
Sbjct: 473 EIGKNP-----SLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYK 527

Query: 196 TLINGLCRLGKI----------------------------YEAKELFK------EMETKA 221
            L+   CR GK+                            +E  EL K      EM  K 
Sbjct: 528 CLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKL 587

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            +  +  YT  + GLCQ++  EEA+++F  ++   ++ N  +   L++GLCK G    A+
Sbjct: 588 NNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAV 647

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++    + K         + LL  L  + K++ A+++L+RM   G   D  L+ +I S  
Sbjct: 648 DIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRMNSAGYDLDEYLHHRIKSYL 707

Query: 342 CDIGKYQEAAN 352
             + K QE  N
Sbjct: 708 LSVWKAQEMEN 718


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 207/410 (50%), Gaps = 9/410 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G +     +++++  L   N+   A ++ + + +      E  + ++  G+ R     
Sbjct: 223 SKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELE 282

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+ + D M      P+  S   ++  L +   +  AFR   H+ E+G+ P + + N LI
Sbjct: 283 MALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALI 342

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK+    +A  ++FR M NRG  P+  TY  LI+ LC+ G + +A  +F  M  K  
Sbjct: 343 DKLCKDRRFREAE-RLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGI 401

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
             TV  Y SLING CQ  +  +A  L  EM  KG+ P+  +YS L+ GLC+ G  + AME
Sbjct: 402 RVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAME 461

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M       N+ T++TL++G CK+G + EA  + D+M    + P+   +  +I  +C
Sbjct: 462 LHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYC 521

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
            +G  ++A    D+MV  G+TP+  T+        +++  LC T    +A +    + N 
Sbjct: 522 RVGNVRKAFQLYDQMVDRGLTPDNYTY-------RSLISVLCLTLGAMKAKEFVDDLENN 574

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            + ++S + ++L+  FCK+G + ++  I DE+   G   D  +++ ++ A
Sbjct: 575 CVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYA 624



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 206/423 (48%), Gaps = 44/423 (10%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++G      T S ++  L+   QF  A DL D + + K  + E ++ +  R Y  + R L
Sbjct: 153 SSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEI-RNL 211

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           D  R                                       M   G++      NVL+
Sbjct: 212 DGAR----------------------------------GLLTRMESKGVKGSAVPYNVLM 237

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+N+  ++A  ++   M  RG   D  TY TL+ G CR  ++  A E+  +M +   
Sbjct: 238 YGLCRNNRVLEAV-EVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHF 296

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P+V + + +++GL +   +++A RL   +   G+ PN+F  ++L+D LCK     +A  
Sbjct: 297 VPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAER 356

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M ++   PN VTY+ L++ LCK G + +A+ + DRM+ +G++     Y  +I+ +C
Sbjct: 357 LFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYC 416

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
               + +A   L+EMV  G+ P+  ++S        ++ GLC K D   A +++  M   
Sbjct: 417 QHDNFHQARGLLNEMVEKGLAPSAASYS-------PLIAGLCRKGDLASAMELHREMARN 469

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +S +  T+++LI+ FCK G++ ++AR+ D+++    +P+E T++ ++        +R+A
Sbjct: 470 GVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKA 529

Query: 462 AEL 464
            +L
Sbjct: 530 FQL 532



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 199/412 (48%), Gaps = 13/412 (3%)

Query: 56  MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG 115
           +I KL    +FR AE L   +     +  E  +  +     +     DA+ +FD+M+E G
Sbjct: 341 LIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKG 400

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
              T   Y +++    + +    A      M E G+ P  AS + LI  LC+  G + +A
Sbjct: 401 IRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCR-KGDLASA 459

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
            ++ REM   G + + YT+ TLI+G C+ G + EA  LF +M   +  P  VT+  +I G
Sbjct: 460 MELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEG 519

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
            C+  +V +A +L+++M  +G+ P+ +TY SL+  LC    + +A E +  + +     N
Sbjct: 520 YCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLN 579

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
             + +TL+ G CKEG+L E   I D M+ +G+K D   +  I+     +   ++ +    
Sbjct: 580 SFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFR 639

Query: 356 EMVLGGITPNRLTWSLHIRIHN---TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSS 412
           EM   G+ P+ +  +  I +H+    +VQ         A   +  M     S + +TY+ 
Sbjct: 640 EMKEKGVKPDNVFHTCMIDVHSKEENIVQ---------ALNCWDKMIADGCSPNVVTYTV 690

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           LI   CK G +  +  + +E+++   LP+  T++  +  L +  ++ +A  L
Sbjct: 691 LINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVL 742



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 198/459 (43%), Gaps = 62/459 (13%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T++++I  L        A  + DR+ ++   +T   + S+  GY +      A
Sbjct: 365 GLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQA 424

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + ++M E G  P+  SY  ++A L  +  L  A   +R M   G+   V +   LI  
Sbjct: 425 RGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISG 484

Query: 165 LCKNS----------------------------------GTMDAAFKIFREMPNRGCTPD 190
            CK+                                   G +  AF+++ +M +RG TPD
Sbjct: 485 FCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPD 544

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
           +YTY +LI+ LC      +AKE   ++E         + T+L+ G C+   + E   +++
Sbjct: 545 NYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWD 604

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EMR++GV+ ++ +++ ++    K     +   L + M  K  +P+ V ++ +++   KE 
Sbjct: 605 EMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEE 664

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            + +A+   D+M   G  P+   Y  +I+  C  G    A    +EM++G   PN  T++
Sbjct: 665 NIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYN 724

Query: 371 -----------------LHIRI----------HNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
                            LH  I           NT+++G CK      A  +  +     
Sbjct: 725 CFLDFLANEGELEKAKVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESG 784

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
              D ++YS++I   CK GDI+K+ ++ +E++  G  PD
Sbjct: 785 FFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPD 823



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 183/392 (46%), Gaps = 10/392 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   +  TF+ +IS          A  L D++        E  F  +  GY RV     
Sbjct: 469 NGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRK 528

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A +++D+M + G  P   +Y +++++L        A  F   +    +     SL  L+ 
Sbjct: 529 AFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMY 588

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G +   + I+ EM  RG   D  ++  ++    +L    +   LF+EM+ K   
Sbjct: 589 GFCK-EGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVK 647

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  V +T +I+   + +++ +A+  +++M + G  PNV TY+ L++ LCK G  S A  L
Sbjct: 648 PDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQIL 707

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M+  R  PN  TY+  L+ L  EG+L++A ++L    L+G   +   +  +I  FC 
Sbjct: 708 CEEMLVGRFLPNSFTYNCFLDFLANEGELEKA-KVLHATILEGCLANTVTFNTLIKGFCK 766

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G+ Q A + +      G  P+ +++S       T++  LCK  D N+AFQ++  M  + 
Sbjct: 767 AGQIQGAIDLMQNNTESGFFPDCISYS-------TIINELCKVGDINKAFQLWNEMLYKG 819

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +  D + Y+ LI      G+  K   I  ++V
Sbjct: 820 LKPDIVAYNILIRWCNIHGEFDKGLGIYSDMV 851



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 14/216 (6%)

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           S G+    +T S ++  L K    + A +L   M+  +   +   Y+  +   C+   L 
Sbjct: 153 SSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLD 212

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            A  +L RM+ +G+K  A  Y  ++   C   +  EA    + MV  GI  + +T+    
Sbjct: 213 GARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTY---- 268

Query: 374 RIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL----TYSSLITCFCKKGDIHKSARI 429
               T+V G C+T+     ++ L M +  +S+  +    + S ++    K+G I K+ R+
Sbjct: 269 ---RTLVYGFCRTEE---LEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRL 322

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              L   G +P+    +A++  L   R+ R+A  L 
Sbjct: 323 ACHLGELGMVPNLFACNALIDKLCKDRRFREAERLF 358


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 202/385 (52%), Gaps = 15/385 (3%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT + ++     E  + +A+ +FD   A    G++ +  ++S++I  L    +      L
Sbjct: 162 ITFSTLINGFCIEGKIGRAIELFDVMVAR---GYKPNVHSYSIIIKGLCRVGKTTEVIKL 218

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L+ +    C+    I+ +I     +     +A+ +F KMK  G  PT  +Y +++  L  
Sbjct: 219 LEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRN 278

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             + K AF     M+   I P + + +VLI  +CK  G +  A  I + M   G  PD  
Sbjct: 279 LGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCK-EGEVSEARVILKTMTEMGVEPDVA 337

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY TL+NG C   ++ EA+++F+ M +K   P V +++ L+NG C++K ++EA +LF+EM
Sbjct: 338 TYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEM 397

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+ P+  +Y++L+ GLC+     +A EL + M S  + PN+VTYS LL+ L K+G L
Sbjct: 398 THRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYL 457

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            +A+ +   M+  GLKPD   Y  +I   C  GK+++A     E+ + G+ PN   W   
Sbjct: 458 DQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPN--NW--- 512

Query: 373 IRIHNTVVQGLCK----TDPNRAFQ 393
             +    + G+CK     + ++AF+
Sbjct: 513 --VCTPTIDGVCKGGLLDEAHKAFR 535



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 197/400 (49%), Gaps = 13/400 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRP 101
           G  HD  + +++I+             +L ++ K   +     F ++  G+   G++ R 
Sbjct: 121 GISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGR- 179

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A+ +FD M   G +P   SY  ++  L    +     +   HM+ +G +P V   N +
Sbjct: 180 --AIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTI 237

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LCK+   ++ A  IF +M   G  P   TY +LI+GL  LG+  EA  L  EM+   
Sbjct: 238 VDRLCKDR-LVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGN 296

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P +V ++ LI+ +C+   V EA  + + M   GVEP+V TY++LM+G C      +A 
Sbjct: 297 IMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEAR 356

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++ ++MISK   P++ ++S L+NG CK  ++ EA ++ D M  +GL PD   Y  +IS  
Sbjct: 357 KVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGL 416

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
           C   +  EA     +M   G  PN +T+S+ +   +   QG      ++A  ++ +M N 
Sbjct: 417 CQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSK--QGYL----DQAMGLFRAMENS 470

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
            +  D +TY+ +I   CK G    +  +  EL + G  P+
Sbjct: 471 GLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPN 510



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 183/360 (50%), Gaps = 9/360 (2%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           V  K+ + G EP   ++ T++     E ++  A   +  M   G +P V S +++IK LC
Sbjct: 148 VLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLC 207

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           +  G      K+   M   GC PD   Y T+++ LC+   + EA  +F +M+     PTV
Sbjct: 208 R-VGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTV 266

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VTYTSLI+GL      +EA  L  EM+   + P++  +S L+D +CK G  S+A  +L+ 
Sbjct: 267 VTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKT 326

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M      P++ TY+TL+NG C   ++ EA ++ + M  +G  PD   +  +++ +C   +
Sbjct: 327 MTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKR 386

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             EA    DEM   G+ P+ +++       NT++ GLC+   P  A +++  M +     
Sbjct: 387 IDEAKQLFDEMTHRGLIPDTVSY-------NTLISGLCQARRPLEAEELFKDMHSNGYPP 439

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +TYS L+ C  K+G + ++  +   +   G  PD  T++ ++  +    K + A EL 
Sbjct: 440 NLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELF 499



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 180/364 (49%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F+ M      P+   +  + + LV     K      + M   GI   V SL +LI
Sbjct: 74  DALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILI 133

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+    +D  F +  ++   G  P+  T+ TLING C  GKI  A ELF  M  +  
Sbjct: 134 NCFCRLC-HVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGY 192

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V +Y+ +I GLC+     E ++L E M+  G EP+V  Y++++D LCK    ++A+ 
Sbjct: 193 KPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVH 252

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   M      P +VTY++L++GL   G+ +EA  +L+ MK   + PD   +  +I   C
Sbjct: 253 IFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMC 312

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
             G+  EA   L  M   G+ P+  T+       NT++ G C + +   A +V+  M ++
Sbjct: 313 KEGEVSEARVILKTMTEMGVEPDVATY-------NTLMNGYCLRMEVVEARKVFEVMISK 365

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D  ++S L+  +CK   I ++ ++ DE+   G +PD  +++ +++ L   R+  +A
Sbjct: 366 GRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEA 425

Query: 462 AELL 465
            EL 
Sbjct: 426 EELF 429



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 1/230 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +   M E G EP   +Y T++       ++  A + +  M   G  P V S ++L+
Sbjct: 319 EARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILV 378

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK +  +D A ++F EM +RG  PD+ +Y TLI+GLC+  +  EA+ELFK+M +   
Sbjct: 379 NGYCK-AKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGY 437

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VTY+ L++ L +   +++AM LF  M + G++P++ TY+ ++DG+CK G    A E
Sbjct: 438 PPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARE 497

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           L   +  K  +PN    +  ++G+CK G L EA +   +M+     P  G
Sbjct: 498 LFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQG 547



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 132/277 (47%), Gaps = 9/277 (3%)

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           I +A   F  M      P++V +  L + L + K  +  + L ++M   G+  +V + + 
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L++  C+         +L  +I     PN++T+STL+NG C EGK+  A+E+ D M  +G
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
            KP+   Y  II   C +GK  E    L+ M + G  P+       + I+NT+V  LCK 
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPD-------VVIYNTIVDRLCKD 244

Query: 387 D-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              N A  ++  M+   I    +TY+SLI      G   ++  +++E+     +PD   +
Sbjct: 245 RLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAF 304

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           S ++  +    ++ + A ++L  +    VE +V   N
Sbjct: 305 SVLIDIMCKEGEVSE-ARVILKTMTEMGVEPDVATYN 340



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/227 (19%), Positives = 103/227 (45%), Gaps = 8/227 (3%)

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
           +++ +A+  F  M +    P++  +  L   L +       + L + M       ++++ 
Sbjct: 70  RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSL 129

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + L+N  C+   +     +L ++   GL+P+   +  +I+ FC  GK   A    D MV 
Sbjct: 130 TILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVA 189

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            G  PN  ++S+       +++GLC+        ++   M+      D + Y++++   C
Sbjct: 190 RGYKPNVHSYSI-------IIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLC 242

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           K   ++++  I  ++   G LP   T+++++  L +  + ++A  LL
Sbjct: 243 KDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLL 289


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 201/402 (50%), Gaps = 9/402 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF++MI+ L    +++ A+D +  +           + ++  GY    +   A ++F  M
Sbjct: 219 TFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTM 278

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+   +P   +Y + ++ L +E +++ A      + E G+ P   + N LI   C N G 
Sbjct: 279 KDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCC-NKGD 337

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D AF    EM NRG     +TY  LI+ L    +I EA+++ KEM  K   P VVTY  
Sbjct: 338 LDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNI 397

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            ING C+  + ++A+ LF+EM  K + P V TY+SL+D   K    S+A E  +  I + 
Sbjct: 398 QINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEG 457

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+I+ ++ L++G C  G +  A ++L  M    + PD   +  ++  +C   K +EA 
Sbjct: 458 MLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAK 517

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
             LDEM   GI P+ +++       NT++ G  K  D   A +V+  M +       LTY
Sbjct: 518 KLLDEMKERGIKPDHISY-------NTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTY 570

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++LI  + K G+   +  ++ E+   G  PD+ T+  V+ A+
Sbjct: 571 NALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAM 612



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 199/410 (48%), Gaps = 45/410 (10%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  V+++M +   + +  ++  ++ IL  E + K A  F  HM   G++P V + N +I 
Sbjct: 201 AWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVIN 260

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C   G  +AA KIF+ M ++   PD YTY + I+ LC+  +I EA  +  ++      
Sbjct: 261 GYCLR-GKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLV 319

Query: 224 PTVVTYTSLINGLCQ-----------------------------------SKSVEEAMRL 248
           P  VTY +LI+G C                                     K +EEA  +
Sbjct: 320 PNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDM 379

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            +EMR KGVEP+V TY+  ++G C+ G + +A+ L   M+ K  RP + TY++L++   K
Sbjct: 380 IKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGK 439

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
             ++ EA E   +   +G+ PD  ++  +I   C  G    A   L EM    + P+ +T
Sbjct: 440 RNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVT 499

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       NT++QG C+      A ++   M+ R I  D ++Y++LI+ + K+GD+  + 
Sbjct: 500 F-------NTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDAL 552

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
            + DE++  G  P   T++A++   + +      AE LL E+ +K +  +
Sbjct: 553 EVFDEMLSLGFDPTLLTYNALIQG-YSKIGEADHAEELLREMQSKGITPD 601



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 206/408 (50%), Gaps = 30/408 (7%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F  +   Y +  +P +A+   + MKE    P  ++  ++L++L++ N++K+A+  Y  M
Sbjct: 149 VFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEM 208

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            ++ I+  + + N++I  LC+  G    A      M   G  P+  TY T+ING C  GK
Sbjct: 209 VKMNIKSSIVTFNIMINILCR-EGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGK 267

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
              A ++FK M+ K   P   TY S I+ LC+ + +EEA  +  ++   G+ PN  TY++
Sbjct: 268 FEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNA 327

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DG C  G   +A      M+++    ++ TY+ L++ L  E +++EA +++  M+ +G
Sbjct: 328 LIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKG 387

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH---------- 376
           ++PD   Y   I+ +C  G  ++A +  DEMV   I P   T++  I +           
Sbjct: 388 VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAE 447

Query: 377 ------------------NTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
                             N ++ G C   + +RAFQ+   M N  +  D +T+++L+  +
Sbjct: 448 EKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGY 507

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           C++  + ++ +++DE+   G  PD  +++ +++    R  M+ A E+ 
Sbjct: 508 CRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVF 555



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 139/263 (52%), Gaps = 1/263 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++L+I  L    +   AED++  + ++  +     +     GY R      A+ +FD+M
Sbjct: 359 TYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEM 418

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E    PT ++Y +++ +  + N++  A   ++   + G+ P +   N LI   C N G 
Sbjct: 419 VEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVN-GN 477

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D AF++ +EM N    PD  T+ TL+ G CR  K+ EAK+L  EM+ +   P  ++Y +
Sbjct: 478 IDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNT 537

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G  +   +++A+ +F+EM S G +P + TY++L+ G  K G +  A ELL+ M SK 
Sbjct: 538 LISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKG 597

Query: 292 HRPNIVTYSTLLNGLCKEGKLQE 314
             P+  TY  ++  +     L E
Sbjct: 598 ITPDDSTYLYVIEAMKTNDDLVE 620



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 135/273 (49%), Gaps = 11/273 (4%)

Query: 178 IFREMP---NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           IF E+    NR     +  +  L++  C+  K  EA E    M+     P   T  SL++
Sbjct: 131 IFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLS 190

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
            L +   ++ A  ++EEM    ++ ++ T++ +++ LC+ G   +A + +  M     +P
Sbjct: 191 LLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKP 250

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N+VTY+T++NG C  GK + A +I   MK + LKPD   Y   IS  C   + +EA+  L
Sbjct: 251 NVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVL 310

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
            +++  G+ PN +T+       N ++ G C K D ++AF     M NR I     TY+ L
Sbjct: 311 CKLLESGLVPNAVTY-------NALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLL 363

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           I     +  I ++  ++ E+   G  PD  T++
Sbjct: 364 IHALFLEKRIEEAEDMIKEMREKGVEPDVVTYN 396



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 36/153 (23%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  TF+ ++       +   A+ LLD + +         + ++  GY +     DA+ VF
Sbjct: 496 DEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVF 555

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M   G +PT  +Y                                   N LI+   K 
Sbjct: 556 DEMLSLGFDPTLLTY-----------------------------------NALIQGYSK- 579

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            G  D A ++ REM ++G TPD  TY  +I  +
Sbjct: 580 IGEADHAEELLREMQSKGITPDDSTYLYVIEAM 612


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 195/364 (53%), Gaps = 9/364 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A++V+ +M   G +P+ K+Y  ++  L               M  +G++P + +  + I
Sbjct: 210 EALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICI 269

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           + L + +G +D A+ I + M + GC PD  TY  LI+ LC  GK+ +AKEL+ +M   + 
Sbjct: 270 RVLGR-AGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSH 328

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +VTY +L++       +E   R + EM + G  P+V TY+ L++ LCK G   QA +
Sbjct: 329 KPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFD 388

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +L +M  +   PN+ TY+TL++GL    +L EA+E+ + M+  G+ P A  Y   I  + 
Sbjct: 389 MLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYG 448

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNR 401
            +G  ++A +  ++M   GI P+       I   N  +  L +    R A  ++  + N 
Sbjct: 449 KLGDPEKALDTFEKMKKRGIMPS-------IAACNASLYSLAEMGRIREAKDIFNDIHNC 501

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +S DS+TY+ ++ C+ K G I K+ +++ E++ +GC PD    ++++  L+   ++ +A
Sbjct: 502 GLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEA 561

Query: 462 AELL 465
            ++ 
Sbjct: 562 WQMF 565



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 193/366 (52%), Gaps = 14/366 (3%)

Query: 85   EDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
            +++ L + R   +  + LDA ++FDK  K  G  PTP+SY  ++  L+  N  + A + +
Sbjct: 752  DNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLF 811

Query: 144  RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
              M+  G  P + + N+L+ A  K S  +D  F+++ EM  RGC P+  T+  +I+ L +
Sbjct: 812  VEMKNAGCCPNIFTYNLLLDAHGK-SKRIDELFELYNEMLCRGCKPNIITHNIIISALVK 870

Query: 204  LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
               I +A +L+ E+ +   SPT  TY  LI GL ++   EEAM++FEEM     +PN   
Sbjct: 871  SNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAI 930

Query: 264  YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            Y+ L++G  K G  + A +L + MI +  RP++ +Y+ L+  L   G++ +AV   + +K
Sbjct: 931  YNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELK 990

Query: 324  LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS---LHIRIHNTVV 380
            L GL PD   Y  +I+      + +EA +   EM   GI+P   T++   LH      V 
Sbjct: 991  LTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVD 1050

Query: 381  QGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            Q         A +++  ++   +  +  TY++LI    K G+  ++  +  ++++ GC P
Sbjct: 1051 Q---------AGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSP 1101

Query: 441  DEGTWS 446
            + GT++
Sbjct: 1102 NAGTFA 1107



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 142  FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            F +  + +G  P   S N L+  L   + T +AA K+F EM N GC P+ +TY  L++  
Sbjct: 775  FDKFTKSLGTHPTPESYNCLMDGLLGCNIT-EAALKLFVEMKNAGCCPNIFTYNLLLDAH 833

Query: 202  CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
             +  +I E  EL+ EM  + C P ++T+  +I+ L +S S+ +A+ L+ E+ S    P  
Sbjct: 834  GKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTP 893

Query: 262  FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             TY  L+ GL K G S +AM++ + M   + +PN   Y+ L+NG  K G +  A ++  R
Sbjct: 894  CTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKR 953

Query: 322  MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
            M  +G++PD   Y  ++ C    G+  +A ++ +E+ L G+ P+ +++       N ++ 
Sbjct: 954  MIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSY-------NLMIN 1006

Query: 382  GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            GL K+     A  ++  M+NR IS +  TY++LI  F   G + ++ ++ +EL   G  P
Sbjct: 1007 GLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEP 1066

Query: 441  DEGTWSAVM 449
            +  T++A++
Sbjct: 1067 NVFTYNALI 1075



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 200/452 (44%), Gaps = 50/452 (11%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLD--RVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           D  T++++I  L +A +   A++L    R +  K D+    ++++   +G         R
Sbjct: 296 DVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVT--YITLMSKFGNYGDLETVKR 353

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
            + +M+  G  P   +Y  ++  L +  ++  AF     MR  GI P + + N LI  L 
Sbjct: 354 FWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLL 413

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN--------------------------- 199
            N   +D A ++F  M + G  P +Y+Y   I+                           
Sbjct: 414 -NLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSI 472

Query: 200 --------GLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
                    L  +G+I EAK++F ++     SP  VTY  ++    ++  +++A +L  E
Sbjct: 473 AACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTE 532

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M S+G EP++   +SL+D L K G   +A ++   +   +  P +VTY+ L+ GL KEGK
Sbjct: 533 MLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGK 592

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           L +A+++   MK  G  P+   +  ++ C C       A      M +   +P+ LT+  
Sbjct: 593 LLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTY-- 650

Query: 372 HIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                NT++ GL K      AF  Y  M+ + +S D +T  +L+    K G +  + +IV
Sbjct: 651 -----NTIIYGLIKEGRAGYAFWFYHQMK-KFLSPDHVTLYTLLPGVVKDGRVEDAIKIV 704

Query: 431 DELV-LDGCLPDEGTWSAVMTALWDRRKMRQA 461
            E V   G       W  +M  +    ++ +A
Sbjct: 705 MEFVHQSGLQTSNQVWGELMECILIEAEIEEA 736



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 202/424 (47%), Gaps = 9/424 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G+  D  T+++++  L  + +   A D+LD +           + ++  G   + R  
Sbjct: 360 ADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLD 419

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ +F+ M+  G  PT  SY+  +    +    + A   +  M++ GI P +A+ N  +
Sbjct: 420 EALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASL 479

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            +L +  G +  A  IF ++ N G +PDS TY  ++    + G+I +A +L  EM ++ C
Sbjct: 480 YSLAE-MGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGC 538

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P ++   SLI+ L ++  V+EA ++F  ++   + P V TY+ L+ GL K G   +A++
Sbjct: 539 EPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALD 598

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M      PN VT++ LL+ LCK   +  A+++  RM +    PD   Y  II    
Sbjct: 599 LFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLI 658

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
             G+   A  F  +M    ++P+ +T  L+  +   V  G  +     A ++ +   ++S
Sbjct: 659 KEGRAGYAFWFYHQMK-KFLSPDHVT--LYTLLPGVVKDGRVED----AIKIVMEFVHQS 711

Query: 403 -ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +   +  +  L+ C   + +I ++    + LV +    D+     ++  L  ++K   A
Sbjct: 712 GLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDA 771

Query: 462 AELL 465
            +L 
Sbjct: 772 KKLF 775



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 205/469 (43%), Gaps = 48/469 (10%)

Query: 52   TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            T++++I+ L    +   A DL   + +  C      F ++     +      A+++F +M
Sbjct: 579  TYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRM 638

Query: 112  KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
                C P   +Y T++  L++E +   AF FY  M++  + P   +L  L+  + K+ G 
Sbjct: 639  TIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKF-LSPDHVTLYTLLPGVVKD-GR 696

Query: 172  MDAAFKIFREMPNR-GCTPDSYTYG----------------------------------- 195
            ++ A KI  E  ++ G    +  +G                                   
Sbjct: 697  VEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLIL 756

Query: 196  TLINGLCRLGKIYEAKELF-KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
             LI  LC+  K  +AK+LF K  ++    PT  +Y  L++GL      E A++LF EM++
Sbjct: 757  PLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKN 816

Query: 255  KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
             G  PN+FTY+ L+D   K     +  EL   M+ +  +PNI+T++ +++ L K   + +
Sbjct: 817  AGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINK 876

Query: 315  AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
            A+++   +      P    YG +I      G+ +EA    +EM      PN         
Sbjct: 877  ALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPN-------CA 929

Query: 375  IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            I+N ++ G  K  + N A  ++  M    I  D  +Y+ L+ C    G +  +    +EL
Sbjct: 930  IYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEEL 989

Query: 434  VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
             L G  PD  +++ ++  L   R++ +A   L  E+ N+ +  E+   N
Sbjct: 990  KLTGLDPDTVSYNLMINGLGKSRRLEEALS-LFSEMKNRGISPELYTYN 1037



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 135/253 (53%), Gaps = 1/253 (0%)

Query: 52   TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            T +++IS LV +N    A DL   +       T   +  +  G  +  R  +AM++F++M
Sbjct: 860  THNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEM 919

Query: 112  KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
             ++ C+P    Y  ++    +   + +A   ++ M + GI+P + S  +L++ L   +G 
Sbjct: 920  PDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFM-TGR 978

Query: 172  MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            +D A   F E+   G  PD+ +Y  +INGL +  ++ EA  LF EM+ +  SP + TY +
Sbjct: 979  VDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNA 1038

Query: 232  LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            LI     +  V++A ++FEE++  G+EPNVFTY++L+ G  K G   +A  + + M+   
Sbjct: 1039 LILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVG 1098

Query: 292  HRPNIVTYSTLLN 304
              PN  T++ L N
Sbjct: 1099 CSPNAGTFAQLPN 1111



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 197/459 (42%), Gaps = 47/459 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D+ T+++M+     A Q   A  LL  +  E C+    +  S+     +  R  +A
Sbjct: 502 GLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEA 561

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++F ++K+    PT  +Y  ++  L +E +L  A   +  M+E G  P   + N L+  
Sbjct: 562 WQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDC 621

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN   +D A K+F  M    C+PD  TY T+I GL + G+   A   + +M+ K  SP
Sbjct: 622 LCKND-AVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMK-KFLSP 679

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEE-MRSKGVEPNVFTYSSLM--------------- 268
             VT  +L+ G+ +   VE+A+++  E +   G++ +   +  LM               
Sbjct: 680 DHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISF 739

Query: 269 -DGL-CKGGCSSQ--AMELLQMMISKRH-----------------RPNIVTYSTLLNGLC 307
            +GL C   C      + L++++  ++                   P   +Y+ L++GL 
Sbjct: 740 AEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLL 799

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
                + A+++   MK  G  P+   Y  ++       +  E     +EM+  G  PN +
Sbjct: 800 GCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNII 859

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T       HN ++  L K++  N+A  +Y  + +   S    TY  LI    K G   ++
Sbjct: 860 T-------HNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEA 912

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +I +E+    C P+   ++ ++        +  A +L 
Sbjct: 913 MKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLF 951



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 142/291 (48%), Gaps = 10/291 (3%)

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
           FK+  ++PN   TP++  Y  ++  L   G++ +   +F  M+ +  +    TY ++   
Sbjct: 109 FKMVSQLPNIVHTPETCNY--MLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKA 166

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           L     + +A     +MR  G   N ++Y+ L+  L + G   +A+++ + MIS+  +P+
Sbjct: 167 LSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPS 226

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           + TYS L+  L +       +++L+ M+  GL+P+   Y   I      G+  +A   L 
Sbjct: 227 MKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILK 286

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLI 414
            M   G  P+ +T+++       ++  LC     ++A ++Y  MR  S   D +TY +L+
Sbjct: 287 TMEDEGCGPDVVTYTV-------LIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLM 339

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + F   GD+    R   E+  DG  PD  T++ ++ AL    K+ QA ++L
Sbjct: 340 SKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDML 390


>gi|297849070|ref|XP_002892416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338258|gb|EFH68675.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 459

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 176/338 (52%), Gaps = 4/338 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GFRHD  ++S +I KL  +  F   + +L  V        E +F+++ + YG+      A
Sbjct: 76  GFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMALIQHYGKAGWVDKA 135

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + VF K+  F C  T +S  T++ +LV+  +L+ A  F+   +++ ++P   S N+LIK 
Sbjct: 136 VDVFHKLTSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKG 195

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
              +    +AA K+F EM      P   TY +LI  LCR   + +A  L ++M  K   P
Sbjct: 196 FL-DKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDMGKATSLLEDMIKKRIRP 254

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT+  L+ GLC +    EA +L  +M  +G +P +  Y  LM  L K G   +A  LL
Sbjct: 255 NAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVNYGVLMSDLGKRGKIDEAKILL 314

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  +R +P+ V Y+ L+N LC EG++ EA   L  M+++G KP+A  Y  I+  FC I
Sbjct: 315 GEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYRTLTEMQMKGCKPNAATYRMIVDGFCRI 374

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           G +    N L+ M+    +P   T+   +R+ + +++G
Sbjct: 375 GDFDSGLNVLNAMLASRHSPTPATF---VRMVSGLIKG 409



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 177/376 (47%), Gaps = 11/376 (2%)

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           +  P +A+ +F + +E G      SY +++  L +        +  R +R   ++ C  S
Sbjct: 59  IEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVR-CRES 117

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L + +      +G +D A  +F ++ +  C     +  TLIN L   G++ +AK  F   
Sbjct: 118 LFMALIQHYGKAGWVDKAVDVFHKLTSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGA 177

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           +     P  V++  LI G       E A ++F+EM    V+P+V TY+SL+  LC+    
Sbjct: 178 KDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDM 237

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A  LL+ MI KR RPN VT+  L+ GLC  G+  EA +++  M+ +G KP    YG +
Sbjct: 238 GKATSLLEDMIKKRIRPNAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVNYGVL 297

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYL 396
           +S     GK  EA   L EM    I P+ +       I+N +V  LC +     A++   
Sbjct: 298 MSDLGKRGKIDEAKILLGEMKKRRIKPDFV-------IYNILVNHLCTEGRVPEAYRTLT 350

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+ +    ++ TY  ++  FC+ GD      +++ ++     P   T+  +++ L    
Sbjct: 351 EMQMKGCKPNAATYRMIVDGFCRIGDFDSGLNVLNAMLASRHSPTPATFVRMVSGLIKGG 410

Query: 457 KMRQAAELLLLELMNK 472
            +  A    +LE+M K
Sbjct: 411 NLDHAC--FVLEVMGK 424



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 133/275 (48%), Gaps = 9/275 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           EA  LF + +         +Y+SLI  L +S++ +   ++   +R + V      + +L+
Sbjct: 64  EALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMALI 123

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
               K G   +A+++   + S      I + +TL+N L   G+L++A    D  K   L+
Sbjct: 124 QHYGKAGWVDKAVDVFHKLTSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLR 183

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TD 387
           P++  +  +I  F D   ++ A    DEM+   + P+ +T+       N+++  LC+  D
Sbjct: 184 PNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTY-------NSLIGFLCRNND 236

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
             +A  +   M  + I  +++T+  L+   C  G+ +++ +++ ++   GC P    +  
Sbjct: 237 MGKATSLLEDMIKKRIRPNAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVNYGV 296

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +M+ L  R K+ + A++LL E+  + ++ +  I N
Sbjct: 297 LMSDLGKRGKIDE-AKILLGEMKKRRIKPDFVIYN 330



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 145/364 (39%), Gaps = 50/364 (13%)

Query: 117 EPT------PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           EPT      P   +  L  L E    + A   +   +E+G +    S + LI  L K S 
Sbjct: 37  EPTHKFTRKPWEEVPFLTDLKEIEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAK-SR 95

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             DA  +I R +  R        +  LI    + G + +A ++F ++ +  C  T+ +  
Sbjct: 96  NFDAVDQILRLVRYRNVRCRESLFMALIQHYGKAGWVDKAVDVFHKLTSFDCVRTIQSLN 155

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LIN L  +  +E+A   F+                           ++ M L       
Sbjct: 156 TLINVLVDNGELEKAKSFFD--------------------------GAKDMRL------- 182

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             RPN V+++ L+ G   +   + A ++ D M    ++P    Y  +I   C      +A
Sbjct: 183 --RPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDMGKA 240

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLT 409
            + L++M+   I PN +T+ L       +++GLC   + N A ++   M  R      + 
Sbjct: 241 TSLLEDMIKKRIRPNAVTFGL-------LMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVN 293

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           Y  L++   K+G I ++  ++ E+      PD   ++ ++  L    ++ +A   L    
Sbjct: 294 YGVLMSDLGKRGKIDEAKILLGEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYRTLTEMQ 353

Query: 470 MNKC 473
           M  C
Sbjct: 354 MKGC 357


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 217/450 (48%), Gaps = 20/450 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSL--MISKLVSANQFRPAE 70
           I    VL L RA    ++ L  +D+      +  RH  ST S+  +++ LV A +   AE
Sbjct: 121 IADMLVLALARA----SQPLRAYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAE 176

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
                  + +       F ++  G  R+ +   A  V   +K +G  P+  +Y +++   
Sbjct: 177 KAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGY 236

Query: 131 VEENQLKLAFR---FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            ++      +      + M E GI P   +  VLI   CKNS T  AA ++F EM  +G 
Sbjct: 237 CKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTA-AAVRVFEEMKQQGI 295

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                TY +LI+GLC  GK+ E  +L +EME    SP  +T+  ++ G C+   + +A  
Sbjct: 296 AASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADAND 355

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
             + M  + VEP+V  Y+ L+D   + G    AM + + M  K   PN+ TY+ L+ G  
Sbjct: 356 WIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFS 415

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           + G  + A  +LD MK +G++ D   Y  +I   C  G+ ++A   LDEM   G+ PN L
Sbjct: 416 RSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHL 475

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+       NT++QG C K +   A+++   M       + +TY+  I  FC+ G + ++
Sbjct: 476 TY-------NTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEA 528

Query: 427 ARIVDELVLDGCL-PDEGTWSAVMTALWDR 455
             +++E+ LD CL P+  T+  +   + ++
Sbjct: 529 NDLLNEM-LDKCLVPNGITYETIKEGMMEK 557



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 177/352 (50%), Gaps = 47/352 (13%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI---- 207
           +P  +S+N L+  L   +  +D A K FR    R  +PD YT+ T+I+GLCR+G++    
Sbjct: 153 RPSTSSVNALLAGLV-GAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 208 ----------------------------------YEAKELFKEMETKACSPTVVTYTSLI 233
                                             Y    L KEM     SPT VT+  LI
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           NG C++ +   A+R+FEEM+ +G+  +V TY+SL+ GLC  G   + ++L++ M      
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN +T+  +L G CK+G + +A + +D M  + ++PD  +Y  +I  +  +GK ++A   
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAV 391

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSS 412
            + M   GI+PN  T+       N ++ G  ++   R+    L  M+ + I  D +TY+ 
Sbjct: 392 KEAMAKKGISPNVTTY-------NCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           LI   C KG++ K+ +++DE+   G  P+  T++ ++    D+  ++ A E+
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEI 496



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 1/259 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +IS L S  +      L++ +        E  F  + +G+ +     DA    D M
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM 360

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E   EP    Y  ++ +     +++ A      M + GI P V + N LI    + SG 
Sbjct: 361 TERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSR-SGD 419

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
             +A  +  EM  +G   D  TY  LI  LC  G++ +A +L  EM      P  +TY +
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I G C   +++ A  +   M       NV TY+  +   C+ G   +A +LL  M+ K 
Sbjct: 480 IIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKC 539

Query: 292 HRPNIVTYSTLLNGLCKEG 310
             PN +TY T+  G+ ++G
Sbjct: 540 LVPNGITYETIKEGMMEKG 558



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 101/231 (43%), Gaps = 1/231 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  TF  ++           A D +D + +   +    I+  +   Y R+ +  DA
Sbjct: 329 GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDA 388

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M V + M + G  P   +Y  ++         + A      M+E GI+  V + NVLI A
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC   G +  A K+  EM   G  P+  TY T+I G C  G I  A E+   ME      
Sbjct: 449 LC-CKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRA 507

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            VVTY   I   CQ   ++EA  L  EM  K + PN  TY ++ +G+ + G
Sbjct: 508 NVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558


>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 629

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 236/482 (48%), Gaps = 43/482 (8%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
            +  LI  +    KAL  F  A+      F H  ST+  +I KL + ++F     LLD +
Sbjct: 41  HIAHLILDQNSATKALQTFKWASN--LPKFTHSQSTYRALIQKLCAFHRFDTVYQLLDEM 98

Query: 77  -NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
            +       E+IFL++ RG GR       ++V D + +FG  P+ K + ++L +LV+ + 
Sbjct: 99  PHAIGSPPDEEIFLTVIRGLGRARMIPHVIKVLDLISKFGKNPSLKIFNSILDVLVKVD- 157

Query: 136 LKLAFRFYR-HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           + +A  FYR  M   G+Q    +  +L+K LC  +   D  F++ + M +RG  P++  Y
Sbjct: 158 IDVAREFYRKQMMGSGVQGDDYTFAILMKGLCLTNRIGDG-FRLLQVMKSRGVKPNAVVY 216

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            TL++ LC+ GK+  A+ L  E+E     P  VT+  LI   C+ +++ +A+ L E+  S
Sbjct: 217 NTLLHALCKNGKVGRARSLMDEIE----EPNDVTFNVLIAAYCKEENLVQALVLLEKSFS 272

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G  P+V T + +++ LC  G  ++A+E+L+ +  K    ++V Y+TLL G C+ GK++ 
Sbjct: 273 LGFVPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKV 332

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A   L  M+ +G  P+   Y  +IS FCD G +  A +  ++M   GI+ N  T+   I+
Sbjct: 333 AHRFLKEMERKGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIK 392

Query: 375 ------------------------------IHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
                                          +N+V+ GL K +  + A +  + M    +
Sbjct: 393 GLFFGGRIEEGLKILELMEESKGGSGGRISPYNSVLYGLYKKNMWDEALEFLMKM--EKL 450

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
              ++  S  I  FC+KG +  +  + D+++ +G  P+   +  ++        +R+A E
Sbjct: 451 FPRAVDRSLRILGFCEKGAVKNAKMVFDQMINEGGTPNILVYDCLVHGFCQEGNLREAFE 510

Query: 464 LL 465
           L+
Sbjct: 511 LM 512



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 227/497 (45%), Gaps = 58/497 (11%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ---- 65
           S KI ++ +  L++ + DV +             +G + D+ TF++++  L   N+    
Sbjct: 142 SLKIFNSILDVLVKVDIDVAREFY----RKQMMGSGVQGDDYTFAILMKGLCLTNRIGDG 197

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT 125
           FR  + +  R  K    +   +  ++C+  G+V R   A  + D+++E    P   ++  
Sbjct: 198 FRLLQVMKSRGVKPNAVVYNTLLHALCKN-GKVGR---ARSLMDEIEE----PNDVTFNV 249

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           ++A   +E  L  A         +G  P V ++  +++ LC N+G +  A ++   +  +
Sbjct: 250 LIAAYCKEENLVQALVLLEKSFSLGFVPDVVTMTKVVEILC-NAGRVTEAVEMLERVEYK 308

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G   D   Y TL+ G CRLGKI  A    KEME K C P V TY  LI+G C S   + A
Sbjct: 309 GGLVDVVAYNTLLRGFCRLGKIKVAHRFLKEMERKGCLPNVETYNILISGFCDSGMFDMA 368

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN--IVTYSTLL 303
           + +F +M++ G+  N  TY +L+ GL  GG   + +++L++M   +      I  Y+++L
Sbjct: 369 LDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEEGLKILELMEESKGGSGGRISPYNSVL 428

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
            GL K+    EA+E L  MK++ L P A      I  FC+ G  + A    D+M+  G T
Sbjct: 429 YGLYKKNMWDEALEFL--MKMEKLFPRAVDRSLRILGFCEKGAVKNAKMVFDQMINEGGT 486

Query: 364 PNRLTWS----------------------------LHIRIHNTVVQGLCKTDPNR-AFQV 394
           PN L +                             L     N ++ G C    +  A ++
Sbjct: 487 PNILVYDCLVHGFCQEGNLREAFELMNEMVGHGYFLVASGFNALIHGFCGQGKDESALKL 546

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M  R    D  TYS LI   C+KG+  K+  I ++++  G  PD  TW++++     
Sbjct: 547 LDDMVGRGCVPDRGTYSPLIDALCRKGNFQKALSIFNQMIEKGITPDSSTWNSLL----- 601

Query: 455 RRKMRQAAELLLLELMN 471
              +R + E++ LE  N
Sbjct: 602 ---IRLSKEIIWLENKN 615


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 174/327 (53%), Gaps = 9/327 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           +L  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 95  MLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 153

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 154 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDA 213

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 214 NELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYG 273

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK G L++A +++D M ++GLKPD   Y  +I   C  G    A      M+   I  +
Sbjct: 274 LCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLD 333

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            + ++        ++ GLC+   +  A ++   M +  +  D  TY+ +I  FCKKGD+ 
Sbjct: 334 DVAYT-------ALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVW 386

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTA 451
           K ++++ E+  +G  P   T++ +M  
Sbjct: 387 KGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 181/356 (50%), Gaps = 21/356 (5%)

Query: 119 TPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVASLNVLIKALCKNSG 170
           T +S I V + L+    E   L+ A   YR  RE    +    C   L  L+K       
Sbjct: 49  TQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLR----- 103

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
                +  + E+   G     Y +  L++  C+ G I  A+ +F  +      P+VV+Y 
Sbjct: 104 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 163

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK      A EL   M+ K
Sbjct: 164 TLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 223

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN VT++TL++G CK G++  A+EI  RM  Q L PD   Y  +I   C  G  ++A
Sbjct: 224 GLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQA 283

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
            + +DEM + G+ P++ T++       T++ G CK  D + AF+    M   +I +D + 
Sbjct: 284 HDLIDEMSMKGLKPDKFTYT-------TLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVA 336

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y++LI+  C++G    + +++ E++  G  PD GT++ ++     +  + + ++LL
Sbjct: 337 YTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLL 392



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 147/287 (51%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 186

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 187 ANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKN-GRV 245

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I++ M ++   PD  TY TLI GLC+ G + +A +L  EM  K   P   TYT+L
Sbjct: 246 DLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTL 305

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A +  + M  + +  +   Y++L+ GLC+ G S  A ++L+ M+S   
Sbjct: 306 IDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGL 365

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+I TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 366 KPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMN 412



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 111/203 (54%), Gaps = 1/203 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M   G  P   ++ T++    +  ++ LA   Y+ M    + P + + N LI
Sbjct: 212 DANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLI 271

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN G +  A  +  EM  +G  PD +TY TLI+G C+ G +  A +  K M  +  
Sbjct: 272 YGLCKN-GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENI 330

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V YT+LI+GLCQ     +A ++  EM S G++P++ TY+ +++  CK G   +  +
Sbjct: 331 RLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSK 390

Query: 283 LLQMMISKRHRPNIVTYSTLLNG 305
           LL+ M    H P++VTY+ L+NG
Sbjct: 391 LLKEMQRNGHAPSVVTYNVLMNG 413



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 149/333 (44%), Gaps = 71/333 (21%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKE-----------------METKACSPT-VVTYTSLI 233
           ++Y T+I+ LC    + EAK L +                  +ETK    + +  ++ LI
Sbjct: 2   HSYCTMIHFLCTHQMLSEAKSLIQLVVSRKGKGSASVVFATILETKGTQRSDIYVFSGLI 61

Query: 234 NGLCQS--------------------------KSVEEAMRL---------FEEMRSKGVE 258
               +S                          K +E  M+L         +EE+   G  
Sbjct: 62  TAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFYEEILECGYP 121

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
            +++ ++ LM   CK G    A  +   +     RP++V+Y+TL+NG  + G L E   +
Sbjct: 122 ASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRL 181

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              M   G++PD   Y  +I+  C   K  +A    DEM++ G+ PN +T++       T
Sbjct: 182 KSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFT-------T 234

Query: 379 VVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ G CK    + A ++Y  M ++S+  D +TY++LI   CK GD+ ++  ++DE+ + G
Sbjct: 235 LIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKG 294

Query: 438 CLPDEGTWSAVM----------TALWDRRKMRQ 460
             PD+ T++ ++          TA   R++M Q
Sbjct: 295 LKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQ 327


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 231/458 (50%), Gaps = 34/458 (7%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV------------- 76
           +AL +F+S+  +   GF+H + + S ++  L+  ++   A+ L+ ++             
Sbjct: 20  QALSLFNSSIQQ---GFQHTHHSISFLLQHLLDHHKLPHAQSLILQILSNKISSPFFTVP 76

Query: 77  --------NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
                   N+     T  ++ SI   + +      A+  F++M + G    P  + ++L 
Sbjct: 77  SLLHHLTQNQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLG 136

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
            LV  N  + A+ F+  ++E  ++  V S  ++IK  C+N G +D +F++   + + G +
Sbjct: 137 SLVRSNCFEKAWLFFNELKE-RVKFDVYSFGIMIKGCCEN-GNLDKSFQLLGLLQDMGLS 194

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+   Y TLI+G C+ G I  A+  F +M          T+T LINGL +    ++   L
Sbjct: 195 PNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDL 254

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           FE+M+  G+ PN++TY+ LM+  C  G   +A +L   M  +    N+VTY+TL+ G+C+
Sbjct: 255 FEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCR 314

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           E ++ EA +++D+MK   + P+   Y  +I  FCD+G   +A++ LD++   G++P+ +T
Sbjct: 315 EERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVT 374

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       N +++G  K    +    +   M  R IS   +T + LI  + +  ++ K+ 
Sbjct: 375 Y-------NILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAF 427

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I   +   G +PD   +  ++  L  +  M+++++L 
Sbjct: 428 QIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLF 465



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 175/332 (52%), Gaps = 9/332 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A   FDKM E G      ++  ++  L ++   K  F  +  M+  G+ P + + N L+ 
Sbjct: 216 ARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMN 275

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C   G +  AF +F EM  RG   +  TY TLI G+CR  +++EA++L  +M+  A S
Sbjct: 276 EYC-GEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVS 334

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI G C   ++++A  L ++++S G+ P++ TY+ L++G  K G      +L
Sbjct: 335 PNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADL 394

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M  +   P+ VT + L++   +  ++++A +I   M+  GL PD  +YG +I   C 
Sbjct: 395 AREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCM 454

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRS 402
            G  +E++     M    + P+ +       I+NT++ G CK D + RA ++   M  + 
Sbjct: 455 KGNMKESSKLFRSMGEMHVEPSDV-------IYNTMIHGYCKEDNSYRALRLLREMEAKG 507

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +  +  +YSS+I   CK G   ++  ++D+++
Sbjct: 508 LVPNVASYSSIIGVLCKDGKWEEAEVLLDKMI 539



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 173/342 (50%), Gaps = 10/342 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR--VNKEKCDI- 83
           D+ +A + FD        G   +  TF+++I+ L      +   DL ++  +N    ++ 
Sbjct: 212 DIERARLFFDKMGEM---GLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLY 268

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           T +  ++   G G++ R  D   +FD+M+E G E    +Y T++  +  E ++  A +  
Sbjct: 269 TYNCLMNEYCGEGKICRAFD---LFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLV 325

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M++  + P + + N LI   C + G +D A  +  ++ + G +P   TY  LI G  +
Sbjct: 326 DQMKKAAVSPNLITYNTLIGGFC-DVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSK 384

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G      +L +EME +  SP+ VT T LI+   + + +E+A +++  M   G+ P+V+ 
Sbjct: 385 AGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYV 444

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y  L+ GLC  G   ++ +L + M      P+ V Y+T+++G CKE     A+ +L  M+
Sbjct: 445 YGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREME 504

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
            +GL P+   Y  II   C  GK++EA   LD+M+   + P+
Sbjct: 505 AKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPS 546



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 151/303 (49%), Gaps = 1/303 (0%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           FD       NG   +  T++ ++++     +   A DL D + +   +     + ++  G
Sbjct: 252 FDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGG 311

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
             R  R  +A ++ D+MK+    P   +Y T++    +   L  A      ++  G+ P 
Sbjct: 312 MCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPS 371

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + + N+LI+   K +G       + REM  RG +P   T   LI+   RL ++ +A +++
Sbjct: 372 LVTYNILIEGYSK-AGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIY 430

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
             ME     P V  Y  LI+GLC   +++E+ +LF  M    VEP+   Y++++ G CK 
Sbjct: 431 SSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKE 490

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
             S +A+ LL+ M +K   PN+ +YS+++  LCK+GK +EA  +LD+M    LKP A + 
Sbjct: 491 DNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASIL 550

Query: 335 GKI 337
             I
Sbjct: 551 NMI 553



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 169/367 (46%), Gaps = 26/367 (7%)

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
           PL A+ +F+   + G + T  S   +L  L++ ++L  A      +    I     ++  
Sbjct: 18  PLQALSLFNSSIQQGFQHTHHSISFLLQHLLDHHKLPHAQSLILQILSNKISSPFFTVPS 77

Query: 161 LIKALCKNSG-TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           L+  L +N   +M  A                  Y ++IN   +   + +A   F EM  
Sbjct: 78  LLHHLTQNQNPSMTTAL----------------LYESIINAHLKSQLLDKALIFFNEMVD 121

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K        + SL+  L +S   E+A   F E++ + V+ +V+++  ++ G C+ G   +
Sbjct: 122 KGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKER-VKFDVYSFGIMIKGCCENGNLDK 180

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           + +LL ++      PN+V Y+TL++G CK G ++ A    D+M   GL  +   +  +I+
Sbjct: 181 SFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLIN 240

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSM 398
                G  ++  +  ++M + G+ PN  T+       N ++   C      RAF ++  M
Sbjct: 241 GLFKKGLKKDGFDLFEKMKINGLFPNLYTY-------NCLMNEYCGEGKICRAFDLFDEM 293

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           R R +  + +TY++LI   C++  + ++ ++VD++      P+  T++ ++    D   +
Sbjct: 294 RERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNL 353

Query: 459 RQAAELL 465
            +A+ LL
Sbjct: 354 DKASSLL 360



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           +K+T   ++      +++ KA  I+ S       G   D   + ++I  L      + + 
Sbjct: 406 SKVTCTVLIDAYVRLQEMEKAFQIYSSMEKF---GLVPDVYVYGVLIHGLCMKGNMKESS 462

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            L   + +   + ++ I+ ++  GY +      A+R+  +M+  G  P   SY +++ +L
Sbjct: 463 KLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVL 522

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++ + + A      M E+ ++P  + LN++ KA
Sbjct: 523 CKDGKWEEAEVLLDKMIELQLKPSASILNMISKA 556


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 189/376 (50%), Gaps = 36/376 (9%)

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
           Q+ LAF     + + G QP   +L  LIK LC   G +  A     ++  +G   D  +Y
Sbjct: 113 QINLAFSVLSKILKWGYQPDTVTLTTLIKGLCL-KGQVKKALHFHDKLLAQGFRLDQVSY 171

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
           GTLING+C++G+   A +L + ++ +   P VV Y ++I+ LC+ K V EA  LF EM  
Sbjct: 172 GTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSV 231

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           KG+  NV TYS+++ G C  G  ++A+  L  M+ K   P++  Y+TL++ L KEGK++E
Sbjct: 232 KGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKE 291

Query: 315 AVEIL---------------------------DRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           A  +L                           + + L G+ PD   Y  +I+  C I + 
Sbjct: 292 AKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRV 351

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           +EA N   EM    + PN +T+       N+++ GLCK+   + A+ +   M +R    +
Sbjct: 352 EEALNLYKEMHQKNMVPNTVTY-------NSLIDGLCKSGRISYAWDLIDEMHDRGHHAN 404

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
            +TY+SLI   CK G + K+  +++++   G  PD  T + ++  L  + K  + A+ L 
Sbjct: 405 VITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLF 464

Query: 467 LELMNKCVEAEVDIQN 482
            +L++K     V   N
Sbjct: 465 QDLLDKGYHPNVYTYN 480



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 202/424 (47%), Gaps = 37/424 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ D  T + +I  L    Q + A    D++  +   + +  + ++  G  ++     A
Sbjct: 128 GYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAA 187

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  ++     EP    Y T++  L +   +  A   +  M   GI   V + + +I  
Sbjct: 188 IQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHG 247

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  A     EM  +   PD Y Y TL++ L + GK+ EAK +   +      P
Sbjct: 248 FCI-VGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKP 306

Query: 225 TVVTYTSLING---------------------------LCQSKSVEEAMRLFEEMRSKGV 257
            V+TY +LI+G                           LC+ K VEEA+ L++EM  K +
Sbjct: 307 NVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNM 366

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PN  TY+SL+DGLCK G  S A +L+  M  + H  N++TY++L+NGLCK G+L +A+ 
Sbjct: 367 VPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIA 426

Query: 318 ILDRMKLQGLKPDAGLYGKII-SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           ++++MK QG++PD      ++    C   + + A     +++  G  PN  T+       
Sbjct: 427 LINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTY------- 479

Query: 377 NTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N ++ G CK    + A+ +   M +   S +++T+  +I    +KG+  K+ +++ E++ 
Sbjct: 480 NIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIA 539

Query: 436 DGCL 439
            G L
Sbjct: 540 RGLL 543



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 135/279 (48%), Gaps = 11/279 (3%)

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           DA F+  R +  R  TP    +  +++   ++        L + +E KA  P   T   L
Sbjct: 46  DALFQFHRMLCMRH-TPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNIL 104

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           IN  C    +  A  +  ++   G +P+  T ++L+ GLC  G   +A+     ++++  
Sbjct: 105 INCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGF 164

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           R + V+Y TL+NG+CK G+ + A+++L R+  +  +P+  +Y  II C C      EA N
Sbjct: 165 RLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACN 224

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
              EM + GI+ N +T+S        ++ G C       A      M  ++I+ D   Y+
Sbjct: 225 LFSEMSVKGISANVVTYS-------AIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYN 277

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCL-PDEGTWSAVM 449
           +L+    K+G + K A+ V  +++  CL P+  T++ ++
Sbjct: 278 TLVDALHKEGKV-KEAKNVLAVIVKTCLKPNVITYNTLI 315



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 116/244 (47%), Gaps = 9/244 (3%)

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
           ++V++A+  F  M      P +  ++ ++D   K       + L + +  K  +P+  T 
Sbjct: 42  ENVDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTL 101

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + L+N  C  G++  A  +L ++   G +PD      +I   C  G+ ++A +F D+++ 
Sbjct: 102 NILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLA 161

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFC 418
            G   +++++        T++ G+CK    R A Q+   +  R    + + Y+++I C C
Sbjct: 162 QGFRLDQVSYG-------TLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLC 214

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           K+  + ++  +  E+ + G   +  T+SA++       K+ +A    L E++ K +  +V
Sbjct: 215 KRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALG-FLNEMVLKAINPDV 273

Query: 479 DIQN 482
            I N
Sbjct: 274 YIYN 277


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 221/448 (49%), Gaps = 36/448 (8%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLD--RVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           ++ T +++I+ L        A ++++  R++K+    T +  ++     G V +  D   
Sbjct: 273 NDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQL 332

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
              +M+  G  PT  +Y  ++  L++  Q++ A   +  MR +G+QP V + N L+   C
Sbjct: 333 ---EMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYC 389

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K +G++  A  +F ++ + G  P   TY  LI+G CRLG + EA+ L +EM  + C P V
Sbjct: 390 K-AGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDV 448

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            TYT L+ G   + S+  A   F+EM SKG++P+ F Y++ +      G  ++A  L ++
Sbjct: 449 CTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREV 508

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+ +    + VTY+ L++GLCK G L +A ++  +M   GL+PD   Y  +I   C+ G 
Sbjct: 509 MMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGL 568

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNT 378
            +EA  F  +M+  G+ P+ +T+++ I                              +N 
Sbjct: 569 LREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNV 628

Query: 379 VVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++  LC+T   + A++ +  M  R +  +  TY+ LI   CK+G+   + R   E+  +G
Sbjct: 629 LIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNG 688

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD  T  A+    +D   M  A E L
Sbjct: 689 IHPDYLTHKALFKG-FDEGHMNHAIEYL 715



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 188/393 (47%), Gaps = 43/393 (10%)

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +  F +M   G  P  K    VL +L +  +       +  M ++GI+P + + N L+ +
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 165 LCKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEAKELFK------- 215
             K  G  D    + +EM  RG  C P+  T+  +I GL R G + EA E+ +       
Sbjct: 247 FLK-EGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKK 305

Query: 216 ---------------------------EMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
                                      EME +   PTVVTY ++I+GL QS  VE A   
Sbjct: 306 ASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVK 365

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EMR+ G++P+V TY+SL++G CK G   +A+ L   +      P ++TY+ L++G C+
Sbjct: 366 FVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCR 425

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G L+EA  + + M  QG  PD   Y  ++    +      A  F DEM+  G+ P+   
Sbjct: 426 LGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFA 485

Query: 369 WSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           ++  IR   T+          +AF++   M    IS D++TY+ LI   CK G+++ +  
Sbjct: 486 YNTRIRAELTL------GAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKD 539

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +  ++V +G  PD  T++ ++ A  +R  +R+A
Sbjct: 540 LQMKMVHNGLQPDCITYTCLIHAHCERGLLREA 572



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 164/351 (46%), Gaps = 8/351 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + D  T++ +++    A   + A  L   +       T   +  +  GY R+    
Sbjct: 371 AMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLE 430

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A R+ ++M E GC P   +Y  ++        L +A  F+  M   G+QP   + N  I
Sbjct: 431 EARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRI 490

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           +A     G +  AF++   M   G + D+ TY  LI+GLC+ G + +AK+L  +M     
Sbjct: 491 RAEL-TLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGL 549

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +TYT LI+  C+   + EA + F++M S G+ P+  TY+  +   C+ G    A  
Sbjct: 550 QPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYG 609

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
             + M+ +   PN +TY+ L++ LC+ G+ Q A      M  +GL P+   Y  +I   C
Sbjct: 610 WFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNC 669

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ 393
             G +++A  F  EM   GI P+ LT       H  + +G  +   N A +
Sbjct: 670 KEGNWEDAMRFYFEMHQNGIHPDYLT-------HKALFKGFDEGHMNHAIE 713



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 12/210 (5%)

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
           CS+  +     M S    P++   + +L  L    +  +   +   M   G++P    Y 
Sbjct: 182 CSTLCLSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYN 241

Query: 336 KIISCFCDIGKYQEAANFLDEMVL--GGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAF 392
            ++  F   G+  + A  L EM     G  PN +T       HN V+ GL  K D   A 
Sbjct: 242 TLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVT-------HNVVITGLARKGDLEEAA 294

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           ++   MR  S    S TY+ LIT    KG + K+  +  E+  +G +P   T++A++  L
Sbjct: 295 EMVEGMR-LSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGL 353

Query: 453 WDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
               ++ +AA++  +E+    ++ +V   N
Sbjct: 354 LQSGQV-EAAQVKFVEMRAMGLQPDVITYN 382


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 209/422 (49%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  T + +I  L    Q + A    D++  +   + +  + ++  G  ++     A
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGA 183

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  K+     +P  + Y T++  L +   +  A+  +  M   GI   V + + LI  
Sbjct: 184 IKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 243

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  A  +  EM  +   P+ YTY  L++ LC+ GK+ EAK +   M      P
Sbjct: 244 FCI-EGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKP 302

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V+TY++L++G      V++A  +F  M   GV P+V TY+ L++G CK     +A+ L 
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P IVTYS+L++GLCK G++    +++D M+ +G   D   Y  +I   C  
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKN 422

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSI 403
           G    A    ++M    I PN  T+++       ++ GLCK    + A +V+  +  +  
Sbjct: 423 GHLDRAIALFNKMKDQEIRPNIFTFTI-------LLDGLCKGGRLKDAQEVFQDLLTKGY 475

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            ++  TY+ +I   CK+G + ++  ++ ++  +GC+P+  T+  ++ AL+ + +  +A +
Sbjct: 476 HLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEK 535

Query: 464 LL 465
           LL
Sbjct: 536 LL 537



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 183/396 (46%), Gaps = 44/396 (11%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V KAL   D   A+   GF+ +  +++ +I+ +      R A  LL +++        ++
Sbjct: 145 VKKALHFHDKLLAQ---GFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEM 201

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + +I     +     +A  +F +M   G      +Y T++     E +LK A      M 
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMV 261

Query: 148 EIGIQPCVASLNVLIKALCKN-------------------------SGTMDAAF------ 176
              I P V + N+L+ ALCK                          S  MD  F      
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 177 ---KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
               +F  M   G TPD +TY  LING C+   + EA  LFKEM  K   P +VTY+SLI
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +GLC+S  +     L +EMR +G   +V TYSSL+DGLCK G   +A+ L   M  +  R
Sbjct: 382 DGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR 441

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PNI T++ LL+GLCK G+L++A E+   +  +G   +   Y  +I+  C  G  +EA   
Sbjct: 442 PNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTM 501

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
           L +M   G  PN  T+        T++  L K D N
Sbjct: 502 LSKMEDNGCIPNAFTFE-------TIIIALFKKDEN 530



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 197/392 (50%), Gaps = 14/392 (3%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  I   + ++     A+ +  +++  G +P   +   ++       Q+   F     + 
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + G  P   +LN LIK LC   G +  A     ++  +G   +  +Y TLING+C++G  
Sbjct: 122 KRGYPPDTVTLNTLIKGLCL-KGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDT 180

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A +L ++++ +   P V  Y+++I+ LC+ + V EA  LF EM  KG+  +V TYS+L
Sbjct: 181 RGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 240

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G C  G   +A+ LL  M+ K   PN+ TY+ L++ LCKEGK++EA  +L  M    +
Sbjct: 241 IYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACV 300

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KPD   Y  ++  +  + + ++A +  + M L G+TP+  T+++       ++ G CK  
Sbjct: 301 KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTI-------LINGFCKNK 353

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A  ++  M  +++    +TYSSLI   CK G I     ++DE+   G   D  T+S
Sbjct: 354 MVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYS 413

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +++  L     + +A     + L NK  + E+
Sbjct: 414 SLIDGLCKNGHLDRA-----IALFNKMKDQEI 440



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 178/338 (52%), Gaps = 10/338 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---IT 84
           V++A  +F   T +   G   D  T+S +I       + + A  LL+ +  +  +    T
Sbjct: 215 VSEAYGLFSEMTVK---GISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYT 271

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            +I +      G+V    +A  V   M +   +P   +Y T++       ++K A   + 
Sbjct: 272 YNILVDALCKEGKVK---EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFN 328

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M  +G+ P V +  +LI   CKN   +D A  +F+EM  +   P   TY +LI+GLC+ 
Sbjct: 329 AMSLMGVTPDVHTYTILINGFCKNK-MVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKS 387

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G+I    +L  EM  +     V+TY+SLI+GLC++  ++ A+ LF +M+ + + PN+FT+
Sbjct: 388 GRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTF 447

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + L+DGLCKGG    A E+ Q +++K +  N+ TY+ ++NG CK+G L+EA+ +L +M+ 
Sbjct: 448 TILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMED 507

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
            G  P+A  +  II       +  +A   L +M+  G+
Sbjct: 508 NGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 146/271 (53%), Gaps = 9/271 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A   F  M     +P ++ +  +++   + K    A+ L   +  KG++P++ T + L+
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           +  C  G  +    +L  ++ + + P+ VT +TL+ GLC +G++++A+   D++  QG +
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQ 161

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD- 387
            +   Y  +I+  C IG  + A   L ++        RLT   ++ +++T++  LCK   
Sbjct: 162 LNQVSYATLINGVCKIGDTRGAIKLLRKI------DGRLTKP-NVEMYSTIIDALCKYQL 214

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            + A+ ++  M  + IS D +TYS+LI  FC +G + ++  +++E+VL    P+  T++ 
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           ++ AL    K+++A  +L + ++  CV+ +V
Sbjct: 275 LVDALCKEGKVKEAKSVLAV-MLKACVKPDV 304



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 142/296 (47%), Gaps = 10/296 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A   F  M     TP    +  +++   ++     A  L   +E K   P ++T   
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C    +     +  ++  +G  P+  T ++L+ GLC  G   +A+     ++++ 
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            + N V+Y+TL+NG+CK G  + A+++L ++  +  KP+  +Y  II   C      EA 
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAY 219

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTY 410
               EM + GI+ + +T+S       T++ G C +     A  +   M  ++I+ +  TY
Sbjct: 220 GLFSEMTVKGISADVVTYS-------TLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTY 272

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCL-PDEGTWSAVMTALWDRRKMRQAAELL 465
           + L+   CK+G + K A+ V  ++L  C+ PD  T+S +M   +   ++++A  + 
Sbjct: 273 NILVDALCKEGKV-KEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/500 (26%), Positives = 231/500 (46%), Gaps = 94/500 (18%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFD 109
           T+++MI  +        A  L +++  +K  +T DI  + ++  GYG++    +++ +F+
Sbjct: 134 TYNIMIGHVCKEGDMLTARSLFEQM--KKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFE 191

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +MK  GCEP   +Y  ++    +   +  AF F+R M++  ++P V S + LI ALCK  
Sbjct: 192 EMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCK-E 250

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYG---------------------------------- 195
           G M  A K F +M   G  P+ +TY                                   
Sbjct: 251 GMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTY 310

Query: 196 -TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            TL++GLC  G + EA+ELF+ M     +P +  YT+LI+G  + +S+++AM LF EMR 
Sbjct: 311 TTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMRE 370

Query: 255 KGVEPNVF-----------------------------------TYSSLMDGLCKGGCSSQ 279
           K ++P++                                     Y++LMD   K G  ++
Sbjct: 371 KDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTE 430

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A+ LL+ M        +VT+  L++GLCK G +QEA+    RM    L+P+  +Y  +I 
Sbjct: 431 AINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALID 490

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMR 399
             C      +A    DEM    + P+++ ++        ++ G  K   +  FQ  L+MR
Sbjct: 491 GLCKNNCIGDAKKLFDEMQDKNMIPDKIAYT-------AMIDGNLK---HGNFQEALNMR 540

Query: 400 NR----SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           N+     I +D   Y+SL+    + G + ++ + + E++  G +PDE   + ++   ++ 
Sbjct: 541 NKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYEL 600

Query: 456 RKMRQAAELLLLELMNKCVE 475
             + +A     +EL N+ VE
Sbjct: 601 GNIDEA-----IELQNELVE 615



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 206/439 (46%), Gaps = 25/439 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK-----CDITEDIFLS--IC-RGYG 96
           GFRH   ++ +++  L  A  +  A ++L  +          D+ E ++ +  +C  G+G
Sbjct: 4   GFRHTTESYCILVHILFYARMYFHANNILKELVLSSWVLPGSDVFEILWTTRNVCVPGFG 63

Query: 97  RVHRPLDAM----------RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
                   +          + F +M +F   P  +S    L  L +  +  L+  F+R M
Sbjct: 64  VFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDM 123

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              GI P V + N++I  +CK  G M  A  +F +M   G TPD  TY TLI+G  ++G 
Sbjct: 124 VGAGIAPTVFTYNIMIGHVCK-EGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGL 182

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + E+  LF+EM+   C P V+TY +LIN  C+ K +  A   F EM+ K ++PNV +YS+
Sbjct: 183 LDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYST 242

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+D LCK G    A++    M      PN  TYS+L++  CK G L EA  + D M  + 
Sbjct: 243 LIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEH 302

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           +  +   Y  ++   C+ G   EA      M   G+TPN   ++  I  H  V       
Sbjct: 303 VDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKV------R 356

Query: 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             ++A +++  MR + I  D L + +++   C +  + +   I+ E+   G   +   ++
Sbjct: 357 SMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYT 416

Query: 447 AVMTALWDRRKMRQAAELL 465
            +M A +      +A  LL
Sbjct: 417 TLMDAYFKAGNRTEAINLL 435



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 181/355 (50%), Gaps = 9/355 (2%)

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           F  M   G  PT  +Y  ++  + +E  +  A   +  M+++G+ P + + N LI    K
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGK 179

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G +D +  +F EM   GC PD  TY  LIN  C+   +  A E F+EM+ K   P V+
Sbjct: 180 -IGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVI 238

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           +Y++LI+ LC+   ++ A++ F +M   G+ PN FTYSSL+D  CK G   +A  L   M
Sbjct: 239 SYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEM 298

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           + +    NIVTY+TLL+GLC+EG + EA E+   M   G+ P+   Y  +I     +   
Sbjct: 299 LQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSM 358

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVD 406
            +A    +EM    I P+ L W        T+V GLC        ++ ++ M+   I  +
Sbjct: 359 DKAMELFNEMREKDIKPDILLWG-------TIVWGLCSESKLEECKIIMTEMKESGIGAN 411

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            + Y++L+  + K G+  ++  +++E+   G      T+ A++  L  R  +++A
Sbjct: 412 PVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEA 466



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 168/338 (49%), Gaps = 9/338 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  + D+M +   +    +Y T+L  L EE  +  A   +R M + G+ P + +   LI
Sbjct: 290 EAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALI 349

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K   +MD A ++F EM  +   PD   +GT++ GLC   K+ E K +  EM+    
Sbjct: 350 HGHIKVR-SMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGI 408

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V YT+L++   ++ +  EA+ L EEMR  G E  V T+ +L+DGLCK G   +A+ 
Sbjct: 409 GANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIY 468

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
               M     +PN+  Y+ L++GLCK   + +A ++ D M+ + + PD   Y  +I    
Sbjct: 469 YFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNL 528

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNR 401
             G +QEA N  ++M+  GI        L +  + ++V GL +    +  + +L+ M  +
Sbjct: 529 KHGNFQEALNMRNKMMEMGI-------ELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGK 581

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            I  D    + L+    + G+I ++  + +ELV  G +
Sbjct: 582 GIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLI 619


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 201/377 (53%), Gaps = 9/377 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G + +  T++ ++    S+ +   A+ +L  + ++K +     + S+  G  +  R  +
Sbjct: 250 SGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++F++M + G  P+   Y T++     +  L +A  +   M + GI P +++ N LI 
Sbjct: 310 ASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIH 369

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL     T D A  + +E+  +G +PD+ TY  LING CR     +A  L  EM      
Sbjct: 370 ALFMEQRT-DEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIK 428

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PT  TYTSL++ L +   ++EA  LF+++ S+GV P+   +++L+DG C       A EL
Sbjct: 429 PTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFEL 488

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L+ M   +  P+ VT++T++ G C+EGK++EA E+ D MK +G+KPD   +  +IS +  
Sbjct: 489 LKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSR 548

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G  ++A    +EM+  G  P  LT+       N +VQGLCK  + + A ++   M ++ 
Sbjct: 549 RGDIKDAFRVRNEMLDTGFNPTVLTY-------NALVQGLCKNQEGDLAEELLKEMVSKG 601

Query: 403 ISVDSLTYSSLITCFCK 419
           ++ D  TY +LI    K
Sbjct: 602 MTPDDTTYFTLIEGIAK 618



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 205/422 (48%), Gaps = 13/422 (3%)

Query: 36  DSATAEYANGFR----HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91
           ++A   YA  FR        TF++MI+ L    + + A+D +  +           + +I
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 92  CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151
             GY    R   A  +   MK    EP   +Y ++++ + ++ +L+ A + +  M + G+
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P     N LI   C N G +D A     EM  +G +P   TY +LI+ L    +  EA+
Sbjct: 323 RPSAVIYNTLIDGFC-NKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
            + KE++ K  SP  +TY  LING C+  + ++A  L +EM + G++P   TY+SL+  L
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
            K     +A +L + + S+   P+ + ++ L++G C    ++ A E+L  M    + PD 
Sbjct: 442 SKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE 501

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNR 390
             +  I+   C  GK +EA    DEM   GI P+ +++       NT++ G  +  D   
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISF-------NTLISGYSRRGDIKD 554

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           AF+V   M +   +   LTY++L+   CK  +   +  ++ E+V  G  PD+ T+  ++ 
Sbjct: 555 AFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIE 614

Query: 451 AL 452
            +
Sbjct: 615 GI 616



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 195/393 (49%), Gaps = 30/393 (7%)

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           ++R  +A   F  MKE G  PT ++  ++L++ ++ N+ + A+  Y  M  + I+  V +
Sbjct: 164 MNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYT 223

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N++I  LCK  G +  A      M   G  P+  TY T+++G C  G++  A  +   M
Sbjct: 224 FNIMINVLCK-EGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           + +   P   TY SLI+G+C+   +EEA ++FEEM  KG+ P+   Y++L+DG C  G  
Sbjct: 283 KRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNL 342

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A      M+ K   P + TY++L++ L  E +  EA  ++  ++ +G+ PDA  Y  +
Sbjct: 343 DMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS--LHIR--------------------- 374
           I+ +C     ++A    DEM+  GI P + T++  LH+                      
Sbjct: 403 INGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462

Query: 375 -----IHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                + N ++ G C  ++   AF++   M    +  D +T+++++   C++G + ++  
Sbjct: 463 LPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARE 522

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           + DE+   G  PD  +++ +++    R  ++ A
Sbjct: 523 LFDEMKRRGIKPDHISFNTLISGYSRRGDIKDA 555



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 171/333 (51%), Gaps = 9/333 (2%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N+   AF  +  M+E G+ P + + N L+    K + T +AA+ ++ EM         YT
Sbjct: 165 NRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRT-EAAWVLYAEMFRLRIKSSVYT 223

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           +  +IN LC+ GK+ +AK+    MET    P +VTY ++++G C S  VE A  +   M+
Sbjct: 224 FNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMK 283

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            + +EP+ FTY SL+ G+CK G   +A ++ + M+ K  RP+ V Y+TL++G C +G L 
Sbjct: 284 RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD 343

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            A    D M  +G+ P    Y  +I       +  EA   + E+   GI+P+ +T+    
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITY---- 399

Query: 374 RIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              N ++ G C+  +  +AF ++  M    I     TY+SL+    KK  + ++  +  +
Sbjct: 400 ---NILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKK 456

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  +G LPD   ++A++        ++ A ELL
Sbjct: 457 ITSEGVLPDAIMFNALIDGHCSNSNVKGAFELL 489



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 186/353 (52%), Gaps = 14/353 (3%)

Query: 118 PTPKSYITVLAILV---EENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMD 173
           P+PK  + +L   +     N ++  F F    R+ +G +  +   + LIK+ C +    D
Sbjct: 111 PSPKPALHLLRQALGGGTTNSIREIFEFLAASRDRLGFKSSIV-FDYLIKSCC-DMNRAD 168

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
            AF+ F  M  +G  P   T  +L++   +L +   A  L+ EM       +V T+  +I
Sbjct: 169 EAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMI 228

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           N LC+   +++A      M + GV+PN+ TY++++ G C  G    A  +L  M  ++  
Sbjct: 229 NVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIE 288

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P+  TY +L++G+CK+G+L+EA +I + M  +GL+P A +Y  +I  FC+ G    A+ +
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAY 348

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVDSLTYSS 412
            DEM+  GI+P   T+       N+++  L  +   + A  +   ++ + IS D++TY+ 
Sbjct: 349 KDEMLKKGISPTMSTY-------NSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNI 401

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           LI  +C+  +  K+  + DE++  G  P + T+++++  L  + +M++A +L 
Sbjct: 402 LINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLF 454



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 139/308 (45%), Gaps = 1/308 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G R     ++ +I    +      A    D + K+    T   + S+        R  +A
Sbjct: 321 GLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEA 380

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +++E G  P   +Y  ++         K AF  +  M   GI+P   +   L+  
Sbjct: 381 ECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHV 440

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L K +  M  A  +F+++ + G  PD+  +  LI+G C    +  A EL K+M+     P
Sbjct: 441 LSKKN-RMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPP 499

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT+ +++ G C+   VEEA  LF+EM+ +G++P+  ++++L+ G  + G    A  + 
Sbjct: 500 DEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVR 559

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+     P ++TY+ L+ GLCK  +   A E+L  M  +G+ PD   Y  +I     +
Sbjct: 560 NEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKV 619

Query: 345 GKYQEAAN 352
               E  N
Sbjct: 620 NIPDENKN 627



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 4/194 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           TK T   +L ++  +  + +A  +F   T+E   G   D   F+ +I    S +  + A 
Sbjct: 430 TKKTYTSLLHVLSKKNRMKEADDLFKKITSE---GVLPDAIMFNALIDGHCSNSNVKGAF 486

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           +LL  +++ K    E  F +I +G+ R  +  +A  +FD+MK  G +P   S+ T+++  
Sbjct: 487 ELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGY 546

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
                +K AFR    M + G  P V + N L++ LCKN    D A ++ +EM ++G TPD
Sbjct: 547 SRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEG-DLAEELLKEMVSKGMTPD 605

Query: 191 SYTYGTLINGLCRL 204
             TY TLI G+ ++
Sbjct: 606 DTTYFTLIEGIAKV 619



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 4/212 (1%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           +  KA ++ D      A+G +    T++ ++  L   N+ + A+DL  ++  E       
Sbjct: 411 NAKKAFLLHDEM---LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAI 467

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F ++  G+        A  +   M      P   ++ T++     E +++ A   +  M
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +  GI+P   S N LI    +  G +  AF++  EM + G  P   TY  L+ GLC+  +
Sbjct: 528 KRRGIKPDHISFNTLISGYSRR-GDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQE 586

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
              A+EL KEM +K  +P   TY +LI G+ +
Sbjct: 587 GDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 207/421 (49%), Gaps = 28/421 (6%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
            RH     S+    LV A  +  A+ +L  +++     ++ +F ++   Y     PL   
Sbjct: 43  LRHLTHMLSITTHILVRARLYENAKSILKHLSQMGVG-SKSVFGALMNTY-----PL--- 93

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
                     C+  P  +  ++ + + E  +  A   +R M   G  P V + N+L+  L
Sbjct: 94  ----------CKSNPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKL 143

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            K    + A +  F+EM  R   PD  T+  LIN LC  GK+ +A  L K+ME     P+
Sbjct: 144 VKER-KVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPS 202

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VVTY +++N  C+    + A+ L ++M SKG+E +  TY+ L+D LCK   S++   LL+
Sbjct: 203 VVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLK 262

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M  +   PN +TY++++NG  KEGK+  A  I   M +  L P+   Y  +I   C  G
Sbjct: 263 KMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDG 322

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSIS 404
            +++A   L+ M   G  PN +++S        ++ GLC+       +  L  MR   + 
Sbjct: 323 NFEQALTILEMMEATGPKPNEVSYS-------ALLNGLCRHAKFELSKSILERMRMNGMI 375

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           V  + Y+++I   C+ G +++S +++D+++ DG +PD  T+S ++       K++   E+
Sbjct: 376 VGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEI 435

Query: 465 L 465
           +
Sbjct: 436 I 436



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 206/418 (49%), Gaps = 9/418 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D STF+++I+ L    + + A  LL ++ +     +   + ++   Y +  R   A+ + 
Sbjct: 167 DVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELI 226

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M   G E    +Y  ++  L + N+    +   + MR+  I P   + N +I    K 
Sbjct: 227 DQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVK- 285

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G + AA +IF+EM      P+  TY  LI+G C  G   +A  + + ME     P  V+
Sbjct: 286 EGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVS 345

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y++L+NGLC+    E +  + E MR  G+      Y++++DGLC+ G  +++++LL  M+
Sbjct: 346 YSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKML 405

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                P++VT+S L+NG C+ GK++   EI+ +M   GL P++ +Y  +I  +C  G   
Sbjct: 406 KDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVV 465

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISV-DS 407
           EA      M       +R+ +  +  I N +V  LCK       + +    ++  +V +S
Sbjct: 466 EAFKVYVAM-------SRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNS 518

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +T+  +I  +   G+  K+  + DE++  G  P   T+  ++ AL    K ++A  LL
Sbjct: 519 ITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLL 576



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 168/313 (53%), Gaps = 9/313 (2%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P   ++  ++ +L  E +LK A    + M E G  P V + N ++   CK  G   AA +
Sbjct: 166 PDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCK-KGRYKAALE 224

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  +M ++G   D+ TY  L++ LC+  +  +   L K+M  +  SP  +TY S+ING  
Sbjct: 225 LIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFV 284

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +   +  A R+F+EM    + PN  TY++L+DG C  G   QA+ +L+MM +   +PN V
Sbjct: 285 KEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEV 344

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           +YS LLNGLC+  K + +  IL+RM++ G+      Y  +I   C  G   E+   LD+M
Sbjct: 345 SYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKM 404

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITC 416
           +  G+ P+ +T+S+       ++ G C+    +   ++   M    ++ +S+ Y++LI  
Sbjct: 405 LKDGVVPDVVTFSV-------LINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYN 457

Query: 417 FCKKGDIHKSARI 429
           +CK GD+ ++ ++
Sbjct: 458 YCKTGDVVEAFKV 470



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 189/422 (44%), Gaps = 7/422 (1%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G+     T++ +++      +++ A +L+D++  +  +     +  +     + +R   
Sbjct: 197 SGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAK 256

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              +  KM++    P   +Y +++   V+E ++  A R ++ M  + + P   + N LI 
Sbjct: 257 GYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALID 316

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C + G  + A  I   M   G  P+  +Y  L+NGLCR  K   +K + + M      
Sbjct: 317 GHCHD-GNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMI 375

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              + YT++I+GLC++  + E+++L ++M   GV P+V T+S L++G C+ G      E+
Sbjct: 376 VGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEI 435

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M      PN + Y+TL+   CK G + EA ++   M   G   +  +   ++S  C 
Sbjct: 436 ICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCK 495

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
            GK   A  F   M   G  PN +T+   I  +     GL      +AF ++  M     
Sbjct: 496 DGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGL------KAFSMFDEMIKAGH 549

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
                TY  L+   C+ G   ++ R++D+L       D  T++ ++   +    +  A  
Sbjct: 550 HPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVA 609

Query: 464 LL 465
           L 
Sbjct: 610 LF 611



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 164/336 (48%), Gaps = 12/336 (3%)

Query: 135 QLKLAFRFYRHMREIGIQPCV-ASLNVLIKALCKNSGTMDAAFK-IFREMPNRG--CTPD 190
           Q  L  R   HM  I     V A L    K++ K+   M    K +F  + N    C  +
Sbjct: 38  QPGLELRHLTHMLSITTHILVRARLYENAKSILKHLSQMGVGSKSVFGALMNTYPLCKSN 97

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
              +  LI    R G + +A E F+ M  +  +P+V T   L+  L + + V      F+
Sbjct: 98  PSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFK 157

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EM ++ V P+V T++ L++ LC  G   +A  LL+ M    + P++VTY+T+LN  CK+G
Sbjct: 158 EMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKG 217

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           + + A+E++D+M  +G++ DA  Y  ++   C   +  +    L +M    I+PN +T+ 
Sbjct: 218 RYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITY- 276

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N+++ G  K      A +++  M   ++  + +TY++LI   C  G+  ++  I
Sbjct: 277 ------NSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTI 330

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++ +   G  P+E ++SA++  L    K   +  +L
Sbjct: 331 LEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSIL 366



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 175/389 (44%), Gaps = 10/389 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G + +  ++S +++ L    +F  ++ +L+R+      +    + ++  G  R     
Sbjct: 336 ATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLN 395

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +++++ DKM + G  P   ++  ++       ++K        M + G+ P       LI
Sbjct: 396 ESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLI 455

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK +G +  AFK++  M   G   + +    L++ LC+ GK+  A+  F  M     
Sbjct: 456 YNYCK-TGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGN 514

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +T+  +ING   S +  +A  +F+EM   G  P+ FTY  L+  LC+ G   +A  
Sbjct: 515 VPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKR 574

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  +       + VTY+T+L    K G L +AV + D M  + + PD+  Y  I +   
Sbjct: 575 LLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLI 634

Query: 343 DIGKYQEAANFLDEMV-LGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRN 400
             GK   A +F   ++  G ++P ++ ++       T V GL +   ++A   +   M  
Sbjct: 635 RRGKMVAALHFYGNLLGKGAVSPEKVMYT-------TFVDGLFRAGQSKAALYFCEDMEK 687

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARI 429
             +  D +  + ++  + + G + K+  I
Sbjct: 688 NGLCADLIATNVILNGYSRMGKMAKAGDI 716



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 197/438 (44%), Gaps = 14/438 (3%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           KA  +FD        G    + T+  ++  L  A +F+ A+ LLD+++     +    + 
Sbjct: 536 KAFSMFDEMIKA---GHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYN 592

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           +I     +     DA+ +FD+M +    P   +Y  + A L+   ++  A  FY ++   
Sbjct: 593 TILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGK 652

Query: 150 G-IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
           G + P        +  L + +G   AA     +M   G   D      ++NG  R+GK+ 
Sbjct: 653 GAVSPEKVMYTTFVDGLFR-AGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMA 711

Query: 209 EAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           +A ++F  M +    SP++ TY  L++G  + K++ +   L+  M   G+ P+  T  SL
Sbjct: 712 KAGDIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSL 771

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G CK       ++LL+ M+      +  T++ L+   C+  ++ +A ++++ M L  +
Sbjct: 772 ILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDI 831

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            PD   +  IIS    +   QE+   L EM+  G  P+R       R +  +V  +C+  
Sbjct: 832 FPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDR-------RQYIALVNRMCRMG 884

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + AF++   M    IS   +  S+L+    K G + ++  ++D ++    +P   T++
Sbjct: 885 HIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFT 944

Query: 447 AVMTALWDRRKMRQAAEL 464
            +M        + +A +L
Sbjct: 945 TLMHMFCRNESLVEALKL 962



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 1/203 (0%)

Query: 132  EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
            E +++  AF     M    I P + + + +I  L + S T+  +  +  EM  RGC PD 
Sbjct: 812  ETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVS-TVQESHLLLHEMLERGCIPDR 870

Query: 192  YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
              Y  L+N +CR+G I+ A +L  EME    S   V  ++L+ GL +   VEEA  + + 
Sbjct: 871  RQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDF 930

Query: 252  MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
            M  K + P + T+++LM   C+     +A++L   M     + +++ Y+ L++GLC +G 
Sbjct: 931  MLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGD 990

Query: 312  LQEAVEILDRMKLQGLKPDAGLY 334
            +  A+++   +K +GL P+   Y
Sbjct: 991  VASALKLYKEIKQRGLWPNMTTY 1013



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 146/363 (40%), Gaps = 49/363 (13%)

Query: 53   FSLMISKLVSANQFRPA----EDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMR 106
            ++  +  L  A Q + A    ED+      EK  +  D+  +  I  GY R+ +   A  
Sbjct: 662  YTTFVDGLFRAGQSKAALYFCEDM------EKNGLCADLIATNVILNGYSRMGKMAKAGD 715

Query: 107  VFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            +F  M       P+  +Y  +L    ++  L      Y  M   GI P   + + LI   
Sbjct: 716  IFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGF 775

Query: 166  CKNSGTMDA-----------------------------------AFKIFREMPNRGCTPD 190
            CK S  +D                                    AF +   M      PD
Sbjct: 776  CK-SAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPD 834

Query: 191  SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
              T+ ++I+ L R+  + E+  L  EM  + C P    Y +L+N +C+   +  A +L +
Sbjct: 835  MTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKD 894

Query: 251  EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            EM + G+       S+L+ GL K G   +A  +L  M+ K   P I T++TL++  C+  
Sbjct: 895  EMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNE 954

Query: 311  KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
             L EA+++ D M    +K D   Y  +IS  C  G    A     E+   G+ PN  T+ 
Sbjct: 955  SLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYC 1014

Query: 371  LHI 373
            + I
Sbjct: 1015 ILI 1017



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 5/243 (2%)

Query: 44   NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRP 101
            +G   D  TF+++I K    ++   A DL++ +N    DI  D+    SI     RV   
Sbjct: 794  DGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNL--FDIFPDMTTHDSIISVLSRVSTV 851

Query: 102  LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             ++  +  +M E GC P  + YI ++  +     +  AF+    M  +GI     + + L
Sbjct: 852  QESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESAL 911

Query: 162  IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
            ++ L K  G ++ A  +   M  +   P   T+ TL++  CR   + EA +L   M+   
Sbjct: 912  VRGLAK-CGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCD 970

Query: 222  CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
                V+ Y  LI+GLC    V  A++L++E++ +G+ PN+ TY  L+D +     S    
Sbjct: 971  VKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYCILIDAIFTNDISLAKG 1030

Query: 282  ELL 284
            E+L
Sbjct: 1031 EVL 1033


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 217/450 (48%), Gaps = 20/450 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSL--MISKLVSANQFRPAE 70
           I    VL L RA    ++ L  +D+      +  RH  ST S+  +++ LV A +   AE
Sbjct: 121 IADMLVLALARA----SQPLRAYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAE 176

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
                  + +       F ++  G  R+ +   A  V   +K +G  P+  +Y +++   
Sbjct: 177 KAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGY 236

Query: 131 VEENQLKLAFR---FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            ++      +      + M E GI P   +  VLI   CKNS T  AA ++F EM  +G 
Sbjct: 237 CKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTA-AAVRVFEEMKQQGI 295

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                TY +LI+GLC  GK+ E  +L +EME    SP  +T+  ++ G C+   + +A  
Sbjct: 296 AASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADAND 355

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
             + M  + VEP+V  Y+ L+D   + G    AM + + M  K   PN+ TY+ L+ G  
Sbjct: 356 WIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFS 415

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           + G  + A  +LD MK +G++ D   Y  +I   C  G+ ++A   LDEM   G+ PN L
Sbjct: 416 RSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHL 475

Query: 368 TWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+       NT++QG C K +   A+++   M       + +TY+  I  FC+ G + ++
Sbjct: 476 TY-------NTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEA 528

Query: 427 ARIVDELVLDGCL-PDEGTWSAVMTALWDR 455
             +++E+ LD CL P+  T+  +   + ++
Sbjct: 529 NDLLNEM-LDKCLVPNGITYETIKEGMMEK 557



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 177/352 (50%), Gaps = 47/352 (13%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI---- 207
           +P  +S+N L+  L   +  +D A K FR    R  +PD YT+ T+I+GLCR+G++    
Sbjct: 153 RPSTSSVNALLAGLV-GAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAG 211

Query: 208 ----------------------------------YEAKELFKEMETKACSPTVVTYTSLI 233
                                             Y    L KEM     SPT VT+  LI
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           NG C++ +   A+R+FEEM+ +G+  +V TY+SL+ GLC  G   + ++L++ M      
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN +T+  +L G CK+G + +A + +D M  + ++PD  +Y  +I  +  +GK ++A   
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAV 391

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSS 412
            + M   GI+PN  T+       N ++ G  ++   R+    L  M+ + I  D +TY+ 
Sbjct: 392 KEAMAKKGISPNVTTY-------NCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           LI   C KG++ K+ +++DE+   G  P+  T++ ++    D+  ++ A E+
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEI 496



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 1/259 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +IS L S  +      L++ +        E  F  + +G+ +     DA    D M
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM 360

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E   EP    Y  ++ +     +++ A      M + GI P V + N LI    + SG 
Sbjct: 361 TERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSR-SGD 419

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
             +A  +  EM  +G   D  TY  LI  LC  G++ +A +L  EM      P  +TY +
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I G C   +++ A  +   M       NV TY+  +   C+ G   +A +LL  M+ K 
Sbjct: 480 IIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKC 539

Query: 292 HRPNIVTYSTLLNGLCKEG 310
             PN +TY T+  G+ ++G
Sbjct: 540 LVPNGITYETIKEGMMEKG 558



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 101/231 (43%), Gaps = 1/231 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  TF  ++           A D +D + +   +    I+  +   Y R+ +  DA
Sbjct: 329 GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDA 388

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M V + M + G  P   +Y  ++         + A      M+E GI+  V + NVLI A
Sbjct: 389 MAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC   G +  A K+  EM   G  P+  TY T+I G C  G I  A E+   ME      
Sbjct: 449 LC-CKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRA 507

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            VVTY   I   CQ   ++EA  L  EM  K + PN  TY ++ +G+ + G
Sbjct: 508 NVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 195/391 (49%), Gaps = 17/391 (4%)

Query: 86  DIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           D+F   ++  GY R  R LDA R    +      P   +Y  ++  L +  ++  A    
Sbjct: 104 DVFAYNTLVAGYCRYGR-LDAARRL--IASMPVPPDAYTYTPLIRGLCDRGRVGDALSLL 160

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M     QP V +  VL++A+CK+SG    A K+  EM  +GCTP+  TY  +ING+CR
Sbjct: 161 DDMLRRECQPSVVTYTVLLEAVCKSSG-FGQAMKVLDEMRAKGCTPNIVTYNVIINGMCR 219

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
             ++ +A+++   + +    P  V+YT+++ GLC +K  E+   LF EM      PN  T
Sbjct: 220 EDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVT 279

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +  L+   C+GG   +A+E+L  M       N    + ++N +CK+G++ +A E L+ M 
Sbjct: 280 FDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMG 339

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G  PD   Y  ++   C  G++++A   L+EMV     PN +T+       NT +  L
Sbjct: 340 SYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTF-------NTFICIL 392

Query: 384 C-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           C K   ++A  +   M     SV  +TY++L+  FC +G +  +  + + L    C P+ 
Sbjct: 393 CQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL---PCEPNT 449

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            T++ ++T L    ++  AAELL   + N C
Sbjct: 450 ITYTTLLTGLCHAERLDAAAELLAEMMQNDC 480



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 227/444 (51%), Gaps = 21/444 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSI-CRGYGRVHR 100
           GF+ D  +++ ++  L +A ++   E L   + +  C   ++T D+ +   CRG G V R
Sbjct: 237 GFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRG-GMVER 295

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A+ V D+M E GC         V+  + ++ ++  AF F  +M   G  P   S   
Sbjct: 296 ---AIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTT 352

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++K LC+ +G  + A ++  EM  + C P+  T+ T I  LC+ G I +A  L ++M   
Sbjct: 353 VLKGLCR-AGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEY 411

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            CS  +VTY +L+NG C    V+ A+ LF    S   EPN  TY++L+ GLC       A
Sbjct: 412 GCSVGIVTYNALVNGFCVQGRVDSALELFN---SLPCEPNTITYTTLLTGLCHAERLDAA 468

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  M+      N+VT++ L++  C++G ++EA+E++ +M   G  P+   +  ++  
Sbjct: 469 AELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDG 528

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
             +    +EA   L  +V  GI+ + +T+S       ++V  L + D    A Q++ +++
Sbjct: 529 ITEDCNSEEALELLHGLVSKGISLDTITYS-------SIVDVLSREDRIEEAVQMFHAVQ 581

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +  +   ++ Y+ +++  CK+ +  ++      +V + C+P+E T+  ++  L  R  + 
Sbjct: 582 DMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLA-REGLL 640

Query: 460 QAAELLLLELMNKCVEAEVDIQNQ 483
           + A  +L EL ++ V ++  I+++
Sbjct: 641 KEARYVLSELCSRGVLSKSLIEDR 664



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 185/382 (48%), Gaps = 37/382 (9%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P+P S  + L  L+  + L  A R        G  P V     LI+ LC+   T DAA +
Sbjct: 35  PSPAS--SRLRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAA-R 91

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           + R     G   D + Y TL+ G CR G++  A+ L   M      P   TYT LI GLC
Sbjct: 92  VLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMPVP---PDAYTYTPLIRGLC 148

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
               V +A+ L ++M  +  +P+V TY+ L++ +CK     QAM++L  M +K   PNIV
Sbjct: 149 DRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIV 208

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+ ++NG+C+E ++ +A +IL+R+   G +PD   Y  ++   C   ++++      EM
Sbjct: 209 TYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEM 268

Query: 358 VLGGITPNRLTWSLHIRIH----------------------------NTVVQGLCKTD-P 388
           V     PN +T+ + +R                              N V+  +CK    
Sbjct: 269 VENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRV 328

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           + AF+   +M +   S D+++Y++++   C+ G    +  +++E+V   C P+E T++  
Sbjct: 329 DDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTF 388

Query: 449 MTALWDRRKMRQAAELLLLELM 470
           +  L  +  + QA  +LL+E M
Sbjct: 389 ICILCQKGLIDQA--ILLIEQM 408



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 181/358 (50%), Gaps = 9/358 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V +A+ + D  +    +G   + +  +++I+ +    +   A + L+ +    C      
Sbjct: 293 VERAIEVLDRMSE---HGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTIS 349

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++ +G  R  R  DA  + ++M    C P   ++ T + IL ++  +  A      M 
Sbjct: 350 YTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMP 409

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G    + + N L+   C   G +D+A ++F  +P   C P++ TY TL+ GLC   ++
Sbjct: 410 EYGCSVGIVTYNALVNGFCVQ-GRVDSALELFNSLP---CEPNTITYTTLLTGLCHAERL 465

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A EL  EM    C   VVT+  L++  CQ   VEEA+ L ++M   G  PN+ T+++L
Sbjct: 466 DAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTL 525

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG+ +   S +A+ELL  ++SK    + +TYS++++ L +E +++EAV++   ++  G+
Sbjct: 526 LDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGM 585

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           +P A +Y KI+S  C   +   A +F   MV     PN  T+   I I     +GL K
Sbjct: 586 RPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYV--ILIEGLAREGLLK 641



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 128/251 (50%), Gaps = 13/251 (5%)

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           +S +  L     + EA RL E   S+G  P+V+  + L+  LC+ G +S A  +L+    
Sbjct: 39  SSRLRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEG 98

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
                ++  Y+TL+ G C+ G+L  A  ++  M    + PDA  Y  +I   CD G+  +
Sbjct: 99  SGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGD 155

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A + LD+M+     P+ +T+++       +++ +CK+    +A +V   MR +  + + +
Sbjct: 156 ALSLLDDMLRRECQPSVVTYTV-------LLEAVCKSSGFGQAMKVLDEMRAKGCTPNIV 208

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY+ +I   C++  +  + +I++ L   G  PD  +++ V+  L   ++  +  E+L  E
Sbjct: 209 TYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRW-EDVEVLFCE 267

Query: 469 LM-NKCVEAEV 478
           ++ N CV  EV
Sbjct: 268 MVENNCVPNEV 278


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 157/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  M+ A ++F EM N G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 177/342 (51%), Gaps = 15/342 (4%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  +   KE        +   V+  L++    KL + FY    E G    +   N+L+
Sbjct: 84  DAIECYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILM 143

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            +  K  G +  A  +F  +   G  P   ++ TL+NG  +LG + E   L   M+    
Sbjct: 144 HSFVKE-GEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGV 202

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V TY+ LINGLC+   +E+A  LF+EM + G+ PN  T+++L+DG CK G    AME
Sbjct: 203 QPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + + M+S+   P+++TY+TL+ GLCK+G L++A ++ D M ++GLKPD   Y  +I   C
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSC 322

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSM 398
             G  + A  +   M+   I  + + ++        ++ GLC+     D  +  +  LS+
Sbjct: 323 KEGHLETAFEYRKRMIKENIRLDDVAYT-------ALISGLCQEGRSVDAEKMLREMLSV 375

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
               +  +  TY+ +I  FCKKGD+   ++++ E+  DG +P
Sbjct: 376 ---GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 174/341 (51%), Gaps = 9/341 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           ++   +E   L+ A   YR  +E   +    +   +I+ L K        +  + E    
Sbjct: 72  LITAYLESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHLMKLK-YFKLVWGFYEESLEY 130

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G     Y +  L++   + G+I  A+ +F  +      P+VV++ +L+NG  +   ++E 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            RL   M++ GV+P+V+TYS L++GLCK      A EL   M++    PN VT++TL++G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDG 250

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
            CK G++  A+EI  +M  Q L PD   Y  +I   C  G  ++A +  DEM + G+ P+
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310

Query: 366 RLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
           ++T++       T++ G CK      AF+    M   +I +D + Y++LI+  C++G   
Sbjct: 311 KITYT-------TLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSV 363

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + +++ E++  G  P+ GT++ ++     +  +   ++LL
Sbjct: 364 DAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 143/298 (47%), Gaps = 11/298 (3%)

Query: 155 VASLNVLIKALC--KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           +A    LI+ +   K  G+  A F    E      + D Y +  LI      G + +A E
Sbjct: 29  IAEAKTLIQIVVSRKGKGSASAVFAAILETKGTQIS-DIYVFSGLITAYLESGFLRDAIE 87

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            ++  +         T   +I  L + K  +     +EE    G   +++ ++ LM    
Sbjct: 88  CYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFV 147

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G    A  +   +     RP++V+++TL+NG  K G L E   + + M+  G++PD  
Sbjct: 148 KEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVY 207

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRA 391
            Y  +I+  C   K ++A    DEM+  G+ PN +T++       T++ G CK    + A
Sbjct: 208 TYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFT-------TLIDGHCKNGRVDLA 260

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            ++Y  M ++S+S D +TY++LI   CKKGD+ ++  + DE+ + G  PD+ T++ ++
Sbjct: 261 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLI 318



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/291 (19%), Positives = 126/291 (43%), Gaps = 26/291 (8%)

Query: 193 TYGTLINGLCRLGKIYEAKELFKE-----------------METKACSPT-VVTYTSLIN 234
           +Y T+I+ LC    I EAK L +                  +ETK    + +  ++ LI 
Sbjct: 15  SYCTMIHFLCTHQMIAEAKTLIQIVVSRKGKGSASAVFAAILETKGTQISDIYVFSGLIT 74

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
              +S  + +A+  +   +         T   +++ L K           +  +   +  
Sbjct: 75  AYLESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPA 134

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           ++  ++ L++   KEG+++ A  + D +   GL+P    +  +++ +  +G   E     
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSL 413
           + M   G+ P+  T+S+       ++ GLCK +    A +++  M N  +  + +T+++L
Sbjct: 195 NAMQASGVQPDVYTYSV-------LINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTL 247

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           I   CK G +  +  I  +++     PD  T++ ++  L  +  ++QA +L
Sbjct: 248 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 211/421 (50%), Gaps = 13/421 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA-MRVFDK 110
           ++S +I+ L  + + R A  L D++  +   + + +F S   G       LDA + +  K
Sbjct: 113 SYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTK 172

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI-QPCVASLNVLIKALCKNS 169
             +FG    P +Y  +L +L+   + + A   +    + G+  P   S NV+IK +C+  
Sbjct: 173 ASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCR-V 231

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTVVT 228
           G    A ++   M   GC+PD+ T+  L++GLCR  ++    +L + ++    C P VVT
Sbjct: 232 GNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVT 291

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YTS+I+G C++  +E+A+ ++ +M   G  PN  TY+ L++G  K      A+ + + +I
Sbjct: 292 YTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLI 351

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +R  P++VT+S+L++G C+ G+L +A+ I   M    ++P+   +  II   C   +  
Sbjct: 352 LRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSA 411

Query: 349 EAANFLDEMVL-GGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
           EA  FL E+ +   I P          I+N V+  LCK      A  +   M  +    D
Sbjct: 412 EALGFLRELNMRADIAPQTF-------IYNPVIDILCKGGQVEEANLIVTDMEEKGCHPD 464

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
             TY+ LI   C KG I ++  +  ++V  GC PD+ T ++ ++ +       +  +++L
Sbjct: 465 KYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCVLKAGMPNEVDQIML 524

Query: 467 L 467
           +
Sbjct: 525 I 525



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 174/339 (51%), Gaps = 13/339 (3%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
            +L L+ A      A+ +F+S   +    +  D  +F+++I  +     F+ A +L++R+
Sbjct: 187 NLLNLLIARGRAQDAVALFESWIQD--GLYSPDGWSFNVVIKGVCRVGNFQKALELVERM 244

Query: 77  NKEKCD---ITEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFG-CEPTPKSYITVLAILV 131
            +  C    IT +I +  +CR   +V+R  D +R   +++  G C P   +Y +V++   
Sbjct: 245 TEFGCSPDTITHNILVDGLCRA-KQVNRGHDLLR---RLQRDGVCMPNVVTYTSVISGYC 300

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +  +++ A   Y  M E G +P   + NVLI    K +  M++A +++R++  R C PD 
Sbjct: 301 KAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGK-ALDMESAVRMYRQLILRRCPPDV 359

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            T+ +LI+G CR G++ +A  ++KEM      P V T++ +I+ LC+     EA+    E
Sbjct: 360 VTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRE 419

Query: 252 MRSKG-VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +  +  + P  F Y+ ++D LCKGG   +A  ++  M  K   P+  TY+ L+ G C +G
Sbjct: 420 LNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKG 479

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           ++ EA+ +  +M   G +PD       ISC    G   E
Sbjct: 480 RIPEAITLFHKMVETGCRPDKITVNSFISCVLKAGMPNE 518



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 135/277 (48%), Gaps = 3/277 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRPLD 103
           G   D  T ++++  L  A Q     DLL R+ ++  C      + S+  GY +  R  D
Sbjct: 248 GCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMED 307

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V++ M E G  P   +Y  ++    +   ++ A R YR +      P V + + LI 
Sbjct: 308 ALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLID 367

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-C 222
             C+  G +D A +I++EM      P+ YT+  +I+ LC+  +  EA    +E+  +A  
Sbjct: 368 GYCR-CGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADI 426

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P    Y  +I+ LC+   VEEA  +  +M  KG  P+ +TY+ L+ G C  G   +A+ 
Sbjct: 427 APQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAIT 486

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           L   M+    RP+ +T ++ ++ + K G   E  +I+
Sbjct: 487 LFHKMVETGCRPDKITVNSFISCVLKAGMPNEVDQIM 523



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 164/398 (41%), Gaps = 87/398 (21%)

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDS------------ 191
           H   + + P   S + +I  LC++    D A K+F +M ++ G  PD+            
Sbjct: 101 HSPPLSVPPSEQSYSHVITLLCRSGRHRD-ALKLFDQMTDQSGYLPDAVFFSFVAGSCTN 159

Query: 192 -----------------------YTYGTLINGLCRLGKIYEAKELFKE------------ 216
                                  Y Y  L+N L   G+  +A  LF+             
Sbjct: 160 AGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGW 219

Query: 217 ------------------------METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
                                   M    CSP  +T+  L++GLC++K V     L   +
Sbjct: 220 SFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRL 279

Query: 253 RSKGV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           +  GV  PNV TY+S++ G CK G    A+ +   M+    RPN VTY+ L+NG  K   
Sbjct: 280 QRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALD 339

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           ++ AV +  ++ L+   PD   +  +I  +C  G+  +A     EM    I PN  T+S+
Sbjct: 340 MESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSI 399

Query: 372 HIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVD----SLTYSSLITCFCKKGDIHKSA 427
                  ++  LCK   NR+ +    +R  ++  D    +  Y+ +I   CK G + ++ 
Sbjct: 400 -------IIHSLCKQ--NRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEAN 450

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            IV ++   GC PD+ T++ ++     + ++ +A  L 
Sbjct: 451 LIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLF 488



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 161/339 (47%), Gaps = 50/339 (14%)

Query: 174 AAFKIFREM--PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA---------- 221
           +A +IF  +  P     P   +Y  +I  LCR G+  +A +LF +M  ++          
Sbjct: 92  SALRIFSALHSPPLSVPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFS 151

Query: 222 -------------CSPTVVT-------------YTSLINGLCQSKSVEEAMRLFEEMRSK 255
                         + T++T             Y +L+N L      ++A+ LFE     
Sbjct: 152 FVAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQD 211

Query: 256 GV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
           G+  P+ ++++ ++ G+C+ G   +A+EL++ M      P+ +T++ L++GLC+  ++  
Sbjct: 212 GLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNR 271

Query: 315 AVEILDRMKLQGL-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
             ++L R++  G+  P+   Y  +IS +C  G+ ++A +  ++M+  G  PN +T+    
Sbjct: 272 GHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTY---- 327

Query: 374 RIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              N ++ G  K  D   A ++Y  +  R    D +T+SSLI  +C+ G +  + RI  E
Sbjct: 328 ---NVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKE 384

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           +      P+  T+S ++ +L   ++ R A  L  L  +N
Sbjct: 385 MGQHHIQPNVYTFSIIIHSLC--KQNRSAEALGFLRELN 421



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 126/271 (46%), Gaps = 13/271 (4%)

Query: 209 EAKELFKEMETKACS--PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYS 265
            A  +F  + +   S  P+  +Y+ +I  LC+S    +A++LF++M  + G  P+   +S
Sbjct: 92  SALRIFSALHSPPLSVPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFS 151

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            +       G    A+ LL        R     Y+ LLN L   G+ Q+AV + +     
Sbjct: 152 FVAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQD 211

Query: 326 GL-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           GL  PD   +  +I   C +G +Q+A   ++ M   G +P+ +T       HN +V GLC
Sbjct: 212 GLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTIT-------HNILVDGLC 264

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSL-TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           +    NR   +   ++   + + ++ TY+S+I+ +CK G +  +  + ++++  G  P+ 
Sbjct: 265 RAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNT 324

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            T++ ++        M  A  +    ++ +C
Sbjct: 325 VTYNVLINGYGKALDMESAVRMYRQLILRRC 355


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 182/363 (50%), Gaps = 9/363 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  +  GY    +  DA+   +KM EFGC P   SY T+L  L++   L+ A      M+
Sbjct: 216 FNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMK 275

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G+ P   + N+L+   C+  G +  A K+   M      P  +TY  L+NG C  GKI
Sbjct: 276 SKGLSPNKHTYNMLVCGYCR-LGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKI 334

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EA  +  EME     P VVTY +LI+G  Q +   E   L EEM  KGV+ N  TY+ +
Sbjct: 335 DEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNII 394

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +  +CK G  ++A   L  M      P+ VTY+TL+   CK GK+ +A  ++D M  +GL
Sbjct: 395 LKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGL 454

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           K D      I+ C C   K  EA N L      G   + +++ +       ++ G  K +
Sbjct: 455 KIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGI-------LILGYFKDE 507

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             +RA  ++  M+ R I   ++TY+S+I   C+   + ++   ++E++ +G +PDE T++
Sbjct: 508 KGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYN 567

Query: 447 AVM 449
            ++
Sbjct: 568 III 570



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 192/378 (50%), Gaps = 13/378 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A +V     + G  P   S+  ++     E+++K A  +   M E G  P   S N ++ 
Sbjct: 197 ARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILD 256

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL K    +  A  +  +M ++G +P+ +TY  L+ G CRLG + EA ++ + M      
Sbjct: 257 ALLKRR-LLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLL 315

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PTV TY  L+NG C    ++EA R+ +EM    V P+V TY++L+DG  +   SS+   L
Sbjct: 316 PTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSL 375

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           ++ M  K  + N VTY+ +L  +CK+G + EA   LD+M+  GL PD   Y  +I  +C 
Sbjct: 376 IEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCK 435

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRS 402
            GK  +A   +DEM   G+  +  TW+L     NT++  LC +   + A+ +  S   R 
Sbjct: 436 AGKMGKAFRMMDEMTSKGLKID--TWTL-----NTILHCLCVEKKLDEAYNLLCSASKRG 488

Query: 403 ISVDSLTYSSLITCFCK--KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +D ++Y  LI  + K  KGD  ++  + DE+     +P   T+++V+  L   RK+ Q
Sbjct: 489 YILDEVSYGILILGYFKDEKGD--RALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQ 546

Query: 461 AAELLLLELMNKCVEAEV 478
           A + L   L N  V  E 
Sbjct: 547 AIDKLNEMLENGLVPDET 564



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 181/352 (51%), Gaps = 10/352 (2%)

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK--NSGTMDA 174
           EP+ +   T +   V+ +Q  LA + +  M+ +  +P + + N L+ +L +  +S ++  
Sbjct: 137 EPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILL 196

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A ++ ++    G  P++ ++  LI G C   K+ +A +   +M    C P  V+Y ++++
Sbjct: 197 ARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILD 256

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
            L + + ++EA  L  +M+SKG+ PN  TY+ L+ G C+ G   +A +++++M      P
Sbjct: 257 ALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLP 316

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
            + TY+ L+NG C +GK+ EA  I D M+   + PD   Y  +I          E  + +
Sbjct: 317 TVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLI 376

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413
           +EM   G+  N +T+       N +++ +CK  +   A      M    +S D +TY++L
Sbjct: 377 EEMDKKGVKCNAVTY-------NIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTL 429

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I  +CK G + K+ R++DE+   G   D  T + ++  L   +K+ +A  LL
Sbjct: 430 IGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLL 481



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 204/425 (48%), Gaps = 9/425 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   +  T+++++         + A  +++ + +     T   +  +  G+    +  
Sbjct: 276 SKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKID 335

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A R+ D+M++    P   +Y T++    +       +     M + G++    + N+++
Sbjct: 336 EAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIIL 395

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K +CK  G M  A     +M   G +PD  TY TLI   C+ GK+ +A  +  EM +K  
Sbjct: 396 KWMCK-KGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGL 454

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
                T  ++++ LC  K ++EA  L      +G   +  +Y  L+ G  K     +A+ 
Sbjct: 455 KIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALN 514

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M  ++  P+ +TY++++ GLC+  K+ +A++ L+ M   GL PD   Y  II  FC
Sbjct: 515 LWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFC 574

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G  ++A  F +EM+     P+  T        N +++GLC+     +A +++ ++ ++
Sbjct: 575 LEGNVEKAFQFHNEMIENLFKPDVYTC-------NILLRGLCREGMLEKALKLFNTLVSK 627

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              +D +TY+++I+  CK+G    +  ++ E+      PD+ T+  ++ AL D  ++++A
Sbjct: 628 GKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEA 687

Query: 462 AELLL 466
            E  L
Sbjct: 688 EEFTL 692



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 176/395 (44%), Gaps = 54/395 (13%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A    DKM+E G  P   +Y T++    +  ++  AFR    M   G++    +LN ++
Sbjct: 406 EATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTIL 465

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC     +D A+ +      RG   D  +YG LI G  +  K   A  L+ EM+ +  
Sbjct: 466 HCLCVEK-KLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQI 524

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV------------------------- 257
            P+ +TY S+I GLCQS+ V++A+    EM   G+                         
Sbjct: 525 MPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQ 584

Query: 258 ----------EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
                     +P+V+T + L+ GLC+ G   +A++L   ++SK    ++VTY+T+++ LC
Sbjct: 585 FHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLC 644

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           KEGK + A ++L  M+ + L PD   Y  II+   D G+ +EA  F  +MV  GI     
Sbjct: 645 KEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGI----- 699

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                  +H+  ++        +   V  S  +      S+ YS  I   C +     + 
Sbjct: 700 -------VHDQNLK------LGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAM 746

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
            +  E+  +G   ++ T+  +M  L  RRK    A
Sbjct: 747 HLFVEVTKEGVALNKYTYLNLMEGLIKRRKSTSKA 781



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 155/344 (45%), Gaps = 24/344 (6%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           KA  + D  T++   G + D  T + ++  L    +   A +LL   +K    + E  + 
Sbjct: 441 KAFRMMDEMTSK---GLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYG 497

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            +  GY +  +   A+ ++D+MKE    P+  +Y +V+  L +  ++  A      M E 
Sbjct: 498 ILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLEN 557

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G+ P   + N++I   C   G ++ AF+   EM      PD YT   L+ GLCR G + +
Sbjct: 558 GLVPDETTYNIIIHGFCL-EGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEK 616

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +LF  + +K     VVTY ++I+ LC+    E A  L  EM +K + P+ +TY  ++ 
Sbjct: 617 ALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIA 676

Query: 270 GLCKGGCSSQAMELLQMMISKR--HRPNIVTYSTLLNGLCKEGKLQEAV--EILDRMKLQ 325
            L   G   +A E    M+     H  N+           K GK Q  +  E+ +    +
Sbjct: 677 ALTDAGRIKEAEEFTLKMVESGIVHDQNL-----------KLGKGQNVLTSEVSEHFDFK 725

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
            +      Y   I+  C+  KY++A +   E+   G+  N+ T+
Sbjct: 726 SIA-----YSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTY 764


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/503 (25%), Positives = 228/503 (45%), Gaps = 67/503 (13%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           KD NKA  I + A     NG      T+++ I+ L  + +   A ++   + ++      
Sbjct: 239 KDFNKAKEIINQAEG---NGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADL 295

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + ++  G  R+      M + D+M E G  P+  +   ++  L++   ++ AF     
Sbjct: 296 VTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNK 355

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL---- 201
           + ++G+ P +   N +I +LCK +G ++ A  +F  M  RG  P+  TY  LI+G     
Sbjct: 356 VGKLGVVPNLFVYNSMINSLCK-TGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRA 414

Query: 202 -------------------------------CRLGKIYEAKELFKEMETKACSPTVVTYT 230
                                          C+ GK+  A+ LFKEM  K   PTV TYT
Sbjct: 415 KLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYT 474

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           SLI+G C+   V +A +L+ EM  KG+ PN  T+++L+ GLC+    ++A +L   M+  
Sbjct: 475 SLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVEL 534

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
           +  PN VTY+ L+ G C+EG    A E+LD M  +GL PD   Y  +I+  C  G+  EA
Sbjct: 535 KILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEA 594

Query: 351 ANFLDE---------------MVLGGITPNRLTWSLHIR-------------IHNTVVQG 382
             F+++               ++ G     R+  +L  R              +  ++ G
Sbjct: 595 KEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISG 654

Query: 383 LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
               +    F++   M  + +  D++ Y+ LI  F K G++ K+      ++ +G +P+ 
Sbjct: 655 ALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNS 714

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T++A++  L+    + +A  L 
Sbjct: 715 VTYTALVNGLFKAGYVNEAKLLF 737



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 220/477 (46%), Gaps = 67/477 (14%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ MI+ L    +   AE L   + +   +  +  +  +  G+GR  +   A   F+KM
Sbjct: 367 VYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKM 426

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E G   T  SY +++    +  ++K+A   ++ M + G++P VA+   LI   CK+ G 
Sbjct: 427 IECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKD-GL 485

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  AFK++ EM  +G  P++ T+  LI GLC++ K+ EA +LF EM      P  VTY  
Sbjct: 486 VPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNV 545

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI G C+  +   A  L +EM  KG+ P+ +TY  L+ GLC  G  S+A E +  +  K 
Sbjct: 546 LIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKH 605

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAV----------------------------------E 317
            R + + Y+ LL G CKEG+++EA+                                  E
Sbjct: 606 QRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRILFE 665

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR--- 374
           +L  M  +G++PD  +Y  +I  F   G  ++A  F   M+  G  PN +T++  +    
Sbjct: 666 LLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLF 725

Query: 375 --------------------IHNTVVQGLCKTDP-------NRAFQVYLSMRNRSISVDS 407
                               I N +  G C  D          A Q++ +M   S + ++
Sbjct: 726 KAGYVNEAKLLFKRMLVGEAIPNHITYG-CFLDHLTKEGNMENALQLHNAMLQGSFA-NT 783

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +TY+ LI  +C+ G   ++A+++D ++  G +PD  T+S  +     R  +  A ++
Sbjct: 784 VTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDM 840



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 215/464 (46%), Gaps = 30/464 (6%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA----------- 69
           LIR   D   AL  F+         F H  ++F ++I  L+  N F PA           
Sbjct: 76  LIRTLDDSRLALRFFNFLGLH--RNFHHSTASFCILIHSLLQNNLFWPASSLLQTLLLRG 133

Query: 70  -------EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
                  E+  +   K K   +   F  + + Y +  R +D + V + M+++G  P  ++
Sbjct: 134 LNPHQIFENFFESYKKYKFSSSSG-FDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRT 192

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
              +L  L    + +     +  +   G++P      V++K LC+     + A +I  + 
Sbjct: 193 LSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELK-DFNKAKEIINQA 251

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
              GC+    TY   INGLC+  +++EA E+ + +  K     +VTY +L+ GLC+ +  
Sbjct: 252 EGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEF 311

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           E  M + +EM   G  P+    S L++GL K G    A ELL  +      PN+  Y+++
Sbjct: 312 EVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSM 371

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           +N LCK GKL+EA  +   M  +GL P+   Y  +I  F    K   A  + ++M+  GI
Sbjct: 372 INSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGI 431

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
           +    ++       N+++   CK    + A  ++  M ++ +     TY+SLI+ +CK G
Sbjct: 432 SATVYSY-------NSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDG 484

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            + K+ ++  E+   G  P+  T++A++  L    KM +A++L 
Sbjct: 485 LVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLF 528



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 198/435 (45%), Gaps = 44/435 (10%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           +++ MI+      + + AE L   +  +    T   + S+  GY +      A +++ +M
Sbjct: 437 SYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEM 496

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P   ++  ++  L + N++  A + +  M E+ I P   + NVLI+  C+  G 
Sbjct: 497 TGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCR-EGN 555

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              AF++  EM  +G +PD+YTY  LI GLC  G++ EAKE   ++  K      + YT+
Sbjct: 556 TTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTA 615

Query: 232 LINGLCQSKSVEEAM----------------------------------RLFEEMRSKGV 257
           L+ G C+   ++EA+                                   L  EM  KG+
Sbjct: 616 LLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRILFELLREMHGKGM 675

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
           +P+   Y+ L+DG  K G   +A E   +MI + + PN VTY+ L+NGL K G + EA  
Sbjct: 676 QPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKL 735

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +  RM +    P+   YG  +      G  + A    + M+ G    N +T+       N
Sbjct: 736 LFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFA-NTVTY-------N 787

Query: 378 TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            +++G C+      A ++   M    +  D +TYS+ I  +CK+G++  +  + + ++  
Sbjct: 788 ILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQR 847

Query: 437 GCLPDEGTWSAVMTA 451
           G  PD   ++ ++ A
Sbjct: 848 GLKPDRVVFNFLIHA 862



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 176/357 (49%), Gaps = 12/357 (3%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E +  +A  + D    +   G   D  T+  +I+ L S  +   A++ ++ ++ +   + 
Sbjct: 553 EGNTTRAFELLDEMIKK---GLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLD 609

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
           E  + ++ +G+ +  R  +A+    +M   G +    SY  +++  + +N  ++ F   R
Sbjct: 610 ELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQND-RILFELLR 668

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   G+QP      +LI    K SG +  AF+ +  M   G  P+S TY  L+NGL + 
Sbjct: 669 EMHGKGMQPDNVIYTILIDGFIK-SGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKA 727

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G + EAK LFK M      P  +TY   ++ L +  ++E A++L   M  +G   N  TY
Sbjct: 728 GYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAML-QGSFANTVTY 786

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + L+ G C+ G   +A +LL +MI     P+ +TYST +   CK G +  A+++ + M  
Sbjct: 787 NILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQ 846

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           +GLKPD  ++  +I   C  G+   A    ++M+L G+ P + T+      H+ +VQ
Sbjct: 847 RGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTY------HSLMVQ 897


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 223/483 (46%), Gaps = 70/483 (14%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D+ T+S+++  L  A +   A++LL ++ +    +    +  +  G  +  R  DA
Sbjct: 68  GYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDA 127

Query: 105 MRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           + +F  M   G C P   ++ ++L  L    ++  AF  + +M + G +P V S + L+ 
Sbjct: 128 LEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLD 187

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +G +D A +++ EM  + C PD   Y + + GLC+  ++ EA +  ++M TK   
Sbjct: 188 GLCK-AGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSK 246

Query: 224 PTVVTYTS-----------------LINGLCQSKSVEEAMRLFEEMRSK----------- 255
              V +++                 +I  LC+S  ++EA + FEEM S+           
Sbjct: 247 ADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNT 306

Query: 256 -------------GV--------------EPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
                        GV               PN+ TY+ ++D LCK     +A EL+  M 
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA 366

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +    P++VTYS L++GLCK GKL  A ++L+ M  +G+ PD+     I++     GK  
Sbjct: 367 NYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
            A + L+ M   G TP+ +T+       NT++ GLCK    + A      M     + D 
Sbjct: 427 YALSHLETMKARGSTPDLVTY-------NTLLDGLCKAGRIDEAITFLAKMVAAKCTPDV 479

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            +Y+ +IT  C+ G    +  I  E+V  G LPD   + +++  L      R   E L L
Sbjct: 480 FSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGL-----ARNGLEDLAL 534

Query: 468 ELM 470
           EL+
Sbjct: 535 ELL 537



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 198/377 (52%), Gaps = 17/377 (4%)

Query: 105 MRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +R+FD + ++ G + +  +Y   L  L + N  +LA+  ++ M+  G  P   + +++++
Sbjct: 22  VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLR 81

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-C 222
            LCK +G +D A ++  ++   G   +  TY  +I+G C+  ++ +A E+FK M +   C
Sbjct: 82  GLCK-AGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGC 140

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVT+ SL+ GLC  + + EA  LFE M   G EPNV +YS+L+DGLCK G   +A  
Sbjct: 141 VPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACR 200

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M+ K   P++V Y++ + GLCK  ++ EA +   +M  +G K DA  +  +I   C
Sbjct: 201 LWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILC 260

Query: 343 DIGKYQEAAN-FLDEMVLGGI------TPNRLTWSLH---IRIHNTVVQGLCKT----DP 388
             G  +EA N  ++ +   G+      T   +    H     + NT++  +CK+    D 
Sbjct: 261 KKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDG 320

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
              FQ   SM+      +  TY+ ++   CK   + ++  +V+E+   G  PD  T+SA+
Sbjct: 321 VLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSAL 380

Query: 449 MTALWDRRKMRQAAELL 465
           +  L    K+ +A +LL
Sbjct: 381 VDGLCKLGKLDRACDLL 397



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 214/485 (44%), Gaps = 82/485 (16%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V+ AL IF + ++    G   D  TF+ ++  L S  +   A  L + + K  C+     
Sbjct: 124 VDDALEIFKTMSS--GGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVIS 181

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G  +  R  +A R++++M E  C P   +Y + +  L + N++  A    R M 
Sbjct: 182 YSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMV 241

Query: 148 EIGIQPCVASLNVLIKALCKN----------------SGTMDAAFKIFREMPNRG----- 186
             G +    + + +I  LCK                 SG +D A K F EM +R      
Sbjct: 242 TKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSA 301

Query: 187 ---------------------------------CTPDSYTYGTLINGLCRLGKIYEAKEL 213
                                            C P+  TY  +++ LC+  ++ EA+EL
Sbjct: 302 ELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQEL 361

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
             EM     SP VVTY++L++GLC+   ++ A  L EEM  +GV P+ FT +S+++ L K
Sbjct: 362 VNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSK 421

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G    A+  L+ M ++   P++VTY+TLL+GLCK G++ EA+  L +M      PD   
Sbjct: 422 AGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFS 481

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------------------- 374
           Y  II+  C  G+   A     EMV  G+ P+ + +   +                    
Sbjct: 482 YTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSL 541

Query: 375 ------IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                 +H  V+ GLCK      A +V   M +     D+ TY S+++   K G + K+ 
Sbjct: 542 CKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKAR 601

Query: 428 RIVDE 432
           ++VD+
Sbjct: 602 QLVDD 606



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 188/377 (49%), Gaps = 24/377 (6%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A   F +M+  G  P   +Y  VL  L +  +L  A      +RE G++  V + +V+I 
Sbjct: 57  AYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116

Query: 164 ALCKNSGTMDAAFKIFREMPN-RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             CK S  +D A +IF+ M +  GC PD  T+ +L+ GLC   ++ EA  LF+ M    C
Sbjct: 117 GCCKAS-RVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGC 175

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V++Y++L++GLC++  ++EA RL+EEM  K   P++  Y+S + GLCK    ++A +
Sbjct: 176 EPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACD 235

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGK-----------------LQEAVEILDRMKLQ 325
             + M++K  + + V +ST++  LCK+G                  L EA +  + M  +
Sbjct: 236 CCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISR 295

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
              P A L+  +I   C   +  +       M     +        ++  +N +V  LCK
Sbjct: 296 NHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMK----SMKEFYCPPNLETYNIMVDNLCK 351

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               + A ++   M N  +S D +TYS+L+   CK G + ++  +++E+  +G  PD  T
Sbjct: 352 AKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFT 411

Query: 445 WSAVMTALWDRRKMRQA 461
            ++++ AL    K+  A
Sbjct: 412 DASILNALSKAGKVDYA 428



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 212/451 (47%), Gaps = 30/451 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++H   T++  +  L  AN  + A +   ++ +      +  +  + RG  +      A
Sbjct: 33  GYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKA 92

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
             +  +++E G +    +Y  V+    + +++  A   ++ M   G   P V + N L+K
Sbjct: 93  KELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLK 152

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC     M  AF +F  M   GC P+  +Y TL++GLC+ G++ EA  L++EM  K+C 
Sbjct: 153 GLCSGE-RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCV 211

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG-------- 275
           P +V YTS + GLC++  V EA     +M +KG + +   +S+++  LCK G        
Sbjct: 212 PDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQ 271

Query: 276 -----CSS----QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
                C S    +A +  + MIS+ H P+   ++TL++ +CK  +L + V +  RMK   
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 327 ---LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
                P+   Y  ++   C   +  EA   ++EM   G++P+ +T+S        +V GL
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS-------ALVDGL 384

Query: 384 CKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK    +RA  +   M    +  DS T +S++    K G +  +   ++ +   G  PD 
Sbjct: 385 CKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDL 444

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            T++ ++  L    ++ +A   L   +  KC
Sbjct: 445 VTYNTLLDGLCKAGRIDEAITFLAKMVAAKC 475


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 170/330 (51%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRJAQSVFDAITKW 154

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LING C+    ++A
Sbjct: 155 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDA 214

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN   +++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 215 NELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 274

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M  +GLKPD   Y  +I   C  G    A      M+      +
Sbjct: 275 LCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLD 334

Query: 366 RLTWSLHIRIHNTVVQGLC----KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC      D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 335 EVXYT-------ALISGLCXEGRSVDAEKMLREMLSV---GLKPDARTYTMIINEFCKKG 384

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG +P   T++ +M  
Sbjct: 385 DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 155/268 (57%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 203

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK S   D A ++F EM  +G  P+   + TLI+G C+ G++  A E++K+M +++ S
Sbjct: 204 GXCKES-KXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 262

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEH 322

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC EG+  +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 323 XKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 382

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 383 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 410



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 128 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 187

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++    +E++   A   +  M   G+ P       LI   CKN G +
Sbjct: 188 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKN-GRV 246

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++  +PD  TY TLI GLC+ G + +A  L  EM  K   P  +TYT+L
Sbjct: 247 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTL 306

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  +    +   Y++L+ GLC  G S  A ++L+ M+S   
Sbjct: 307 IDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGL 366

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 367 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 413



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 1/203 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M   G  P    + T++    +  ++ LA   Y+ M    + P + + N LI
Sbjct: 213 DANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 272

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +  A  +  EM  +G  PD  TY TLI+G C+ G +  A E  K M  +  
Sbjct: 273 YGLCKK-GDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENX 331

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V YT+LI+GLC      +A ++  EM S G++P+  TY+ +++  CK G   +  +
Sbjct: 332 RLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 391

Query: 283 LLQMMISKRHRPNIVTYSTLLNG 305
           LL+ M    H P++VTY+ L+NG
Sbjct: 392 LLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 11/285 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK-EMETKACSPT 225
           K  G+  A F    E        D Y +  LI      G + +A E ++   E K   P 
Sbjct: 32  KGKGSASAVFAAIXETXGTQ-RSDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVP- 89

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             T   ++  L + K  +     +EE+   G   +++ ++ LM   CK G    A  +  
Sbjct: 90  FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFD 149

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +     RP++V+Y+TL+NG  + G L E   +   M   G++PD   Y  +I+  C   
Sbjct: 150 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKES 209

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
           K  +A    DEM++ G+ PN + ++       T++ G CK    + A ++Y  M ++S+S
Sbjct: 210 KXDDANELFDEMLVKGLVPNXVXFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLS 262

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++LI   CKKGD+ ++  ++DE+   G  PD+ T++ ++
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLI 307



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 123/238 (51%), Gaps = 8/238 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L++  C+   +  A  +F+ +   G+ P+V +Y++LM+G  + G   +   L   M+
Sbjct: 128 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 187

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +   +P++ TYS L+NG CKE K  +A E+ D M ++GL P+   +  +I   C  G+  
Sbjct: 188 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVD 247

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A     +M+   ++P+ +T+       NT++ GLCK  D  +A  +   M  + +  D 
Sbjct: 248 LAMEIYKQMLSQSLSPDLITY-------NTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDK 300

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY++LI   CK+GD+  +      ++ +    DE  ++A+++ L    +   A ++L
Sbjct: 301 ITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKML 358


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/508 (27%), Positives = 237/508 (46%), Gaps = 62/508 (12%)

Query: 9   WSTKITSAQVLQLIR--------------AEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           WS K+  AQ+ QL+R              A  DV +A   F  A  ++   +RH    F 
Sbjct: 75  WSPKL-EAQLRQLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWR--YRHAPEVFD 131

Query: 55  LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114
            M+S L +     PA  ++  + +       + F  +   Y R  +   AMRV   M++ 
Sbjct: 132 EMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKD 191

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           GC P        + +LV   ++  A  F   MR +G++P V + N LIK LC     +DA
Sbjct: 192 GCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDA 251

Query: 175 AFKIFREMPNRGCTPD--SY----------------------------------TYGTLI 198
             ++   M   GC PD  SY                                  TY  LI
Sbjct: 252 -MEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLI 310

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +GL + G   EA E  +E E K      V Y+++++  C +  + EA  +  EM SKG +
Sbjct: 311 HGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQ 370

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P+V TYS+++DG C+ G   QA ++++ M     +PN VT++ LLNGLCK GK  EA E+
Sbjct: 371 PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWEL 430

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L++ + +   P    Y  ++  F   GK +E+ + + +M+  G  P   T  +++ IH  
Sbjct: 431 LNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPT--TVEINLLIH-- 486

Query: 379 VVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
               LCK   P  A       +++  +++ + ++++I  F ++GD+  +  ++D++ L  
Sbjct: 487 ---ALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSN 543

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
             PD  T++ V+ AL  + ++++A  L+
Sbjct: 544 RHPDVVTYTVVVDALGKKGRLKEATGLV 571



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 225/450 (50%), Gaps = 12/450 (2%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           V+ M +   +  + Q  QL+ +     K             +G   D S  ++ ++ LV 
Sbjct: 150 VRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVV 209

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           A +   A +  +R+ +    +  D++   C  +G     R +DAM +   M + GC P  
Sbjct: 210 AGRVDKALEFAERMRR--VGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDK 267

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
            SY TV++ L +E +++      + MR + G+ P   + NVLI  L K+ G  D A +  
Sbjct: 268 ISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKH-GHADEALEFL 326

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           RE   +    D   Y  +++  C  G++ EAKE+  EM +K C P VVTY+++++G C+ 
Sbjct: 327 RESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRI 386

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A ++ + M     +PN  T+++L++GLCK G +S+A ELL     +   P+ +TY
Sbjct: 387 GELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITY 446

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           S +++G  +EGKL+E+ +++ +M  +G  P       +I   C   K  EA +F+++   
Sbjct: 447 SVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQS 506

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G T N + ++    IH    QG  ++  +    +YLS R+  +   ++   +L     K
Sbjct: 507 KGCTINVVNFT--TVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDAL----GK 560

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           KG + ++  +V++++  G LP   T+  V+
Sbjct: 561 KGRLKEATGLVEKMLNRGVLPTPVTYRTVI 590



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 178/387 (45%), Gaps = 12/387 (3%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           G V R  +  R  D+   +     P+ +  +L++L        A R  R M   G++   
Sbjct: 105 GDVRRAFEFFRWADRQWRY--RHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGT 162

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
                L+ +  + +G + +A ++   M   GC PD       +N L   G++ +A E  +
Sbjct: 163 EQFAQLMLSYSR-AGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAE 221

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            M      P V TY  LI GLC ++ V +AM +   M   G  P+  +Y ++M  LCK  
Sbjct: 222 RMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEK 281

Query: 276 CSSQAMELLQMMISKRHR-PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
              +   LLQ M +     P+ VTY+ L++GL K G   EA+E L   + +  + D   Y
Sbjct: 282 RVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGY 341

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393
             I+  FC  G+  EA   + EM+  G  P+ +T+S       TVV G C+  + ++A +
Sbjct: 342 SAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYS-------TVVDGFCRIGELDQARK 394

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +   M       +++T+++L+   CK G   ++  ++++   +   P + T+S VM    
Sbjct: 395 MMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFR 454

Query: 454 DRRKMRQAAELLLLELMNKCVEAEVDI 480
              K++++ ++++  L        V+I
Sbjct: 455 REGKLKESCDVVVQMLQKGFFPTTVEI 481



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 190/416 (45%), Gaps = 16/416 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC----DITEDIFLSICRGYGRVH 99
           NG   D  ++  ++S L    +      LL R+  +       +T ++ +     +G   
Sbjct: 261 NGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHAD 320

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
             L+ +R  +  K F  +     Y  ++       ++  A      M   G QP V + +
Sbjct: 321 EALEFLRESEG-KRFRVDEV--GYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYS 377

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            ++   C+  G +D A K+ + M    C P++ T+  L+NGLC++GK  EA EL  + E 
Sbjct: 378 TVVDGFCR-IGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEE 436

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +  +P+ +TY+ +++G  +   ++E+  +  +M  KG  P     + L+  LCK    ++
Sbjct: 437 EWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAE 496

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A + ++   SK    N+V ++T+++G  ++G L+ A+ ++D M L    PD   Y  ++ 
Sbjct: 497 AKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVD 556

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMR 399
                G+ +EA   +++M+  G+ P  +T+     IH    +G  +   N   ++     
Sbjct: 557 ALGKKGRLKEATGLVEKMLNRGVLPTPVTY--RTVIHRYCEKGNLEDLLNLLEKMLARQE 614

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            +S       Y+ ++   C  G ++++  ++ +++    + D  T   +M +  +R
Sbjct: 615 MKS------AYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCHILMESFLNR 664



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 149/324 (45%), Gaps = 5/324 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G + D  T+S ++       +   A  ++  + K  C        ++  G  +V +  
Sbjct: 366 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 425

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  + +K +E    P+  +Y  V+     E +LK +      M + G  P    +N+LI
Sbjct: 426 EAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLI 485

Query: 163 KALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
            ALCK+    +A  K F E   ++GCT +   + T+I+G  R G +  A  L  +M    
Sbjct: 486 HALCKDRKPAEA--KDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSN 543

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVTYT +++ L +   ++EA  L E+M ++GV P   TY +++   C+ G     +
Sbjct: 544 RHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDLL 603

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ M++++   +   Y+ ++  LC  GKL EA  +L ++       DA     ++  F
Sbjct: 604 NLLEKMLARQEMKS--AYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCHILMESF 661

Query: 342 CDIGKYQEAANFLDEMVLGGITPN 365
            + G   +A N    M    + P+
Sbjct: 662 LNRGLGLQAYNVACRMFRRNLIPD 685


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 157/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM + G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VJ  L++    KL + FY    E G    +   N+L+ +  K  G +  A  +F  +   
Sbjct: 107 VJEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE-GEIRLAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  +LG + E   L   M+     P V TY+ LINGLC+   +++A
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM   G+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A ++ D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  +
Sbjct: 286 LCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKG
Sbjct: 346 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG +P
Sbjct: 396 DVWTGSKLLKEMQRDGYVP 414



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 151/275 (54%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++   + G+I  A+ +F  +      P+VV++ +L+NG  +   ++E  RL   
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNX 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A EL   M+     PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A +  DEM + G+ P+++T++ 
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYT- 315

Query: 372 HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK      AF+    M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  P+ GT++ ++     +  +   ++LL
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E      + D Y +  LI      G + +A E ++  +        
Sbjct: 43  KGKGSASAVFAAJLETKGTQIS-DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPF 101

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   +J  L + K  +     +EE    G   +++ ++ LM    K G    A  +   
Sbjct: 102 DTCRKVJEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDA 161

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I+  C   K
Sbjct: 162 ITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESK 221

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+S 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           D +TY++LI   CKKGD+ ++  + DE+ + G  PD+ T++ ++
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLI 318


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 209/426 (49%), Gaps = 49/426 (11%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI- 149
           +C   GR  R +D   V  +M E GC+P   SY  +L  L ++   + A      M +  
Sbjct: 145 LCTAGGRAMR-MDI--VLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHK 201

Query: 150 GIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
           G  P  V +   +I  L +  G +D A+ +F  M +RG +PD  TY ++I+ L +   + 
Sbjct: 202 GRCPLDVVAYTTVINGLLR-EGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 260

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A ++F  M      P  + YTSL++G C S   +EA+ +F++M   GVEP+V TY++LM
Sbjct: 261 KATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALM 320

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD-------- 320
           D LCK G S++A ++   ++ + H+P+  TY TLL+G   EG L E  ++LD        
Sbjct: 321 DYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQ 380

Query: 321 ---------------------------RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
                                       M+ QGL PD   YG ++   C  G+  +A + 
Sbjct: 381 LGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQ 440

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
            + +   G+ PN       I +  T++ GLC  D  ++  ++   M +R I +D++ +++
Sbjct: 441 FNSLKSEGLAPN-------IVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNA 493

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           ++   CKKG + ++  + D +V  G  P+  T++ ++       KM +A +LL + + N 
Sbjct: 494 IMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNG 553

Query: 473 CVEAEV 478
              ++V
Sbjct: 554 VKPSDV 559



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 191/422 (45%), Gaps = 47/422 (11%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +    V+  +  E  ++KA  +FD   A    G   D  T+S +IS L        A  +
Sbjct: 209 VAYTTVINGLLREGQLDKAYSLFD---AMLDRGPSPDVVTYSSIISALSKTQAMDKATQV 265

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
             R+ K        ++ S+  GY    +P +A+ +F KM   G EP   +Y  ++  L +
Sbjct: 266 FTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCK 325

Query: 133 ENQLKLAFRFYRHMREIGIQPCVAS----------------------------------- 157
             +   A + +  + + G +P   +                                   
Sbjct: 326 NGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHI 385

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N+++ A  K++  +D A  +F  M  +G  PD   YGT+++ LC  G++ +A   F  +
Sbjct: 386 FNMIMGAYAKHN-KVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSL 444

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           +++  +P +V +T+LI+GLC     ++   L  EM  +G+  +   ++++M  LCK G  
Sbjct: 445 KSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRV 504

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A  L  +M+     PN  TY+TL++G C +GK+ EA+++L  M   G+KP    Y  I
Sbjct: 505 IEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTI 564

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYL 396
           I+ +   G+ ++    L EM   G+ P  +T+ +       ++QGL +      A ++YL
Sbjct: 565 INGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEM-------LLQGLFQAGRTVAAKELYL 617

Query: 397 SM 398
            M
Sbjct: 618 RM 619



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 150/315 (47%), Gaps = 1/315 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++ ++  L    +   A  + D + K         + ++  GY      ++
Sbjct: 307 HGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVE 366

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              + D M + G +     +  ++    + N++  A   + +MR+ G+ P + +   ++ 
Sbjct: 367 MHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLD 426

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC  +G +D A   F  + + G  P+   + TLI+GLC   K  + +EL  EM  +   
Sbjct: 427 ILC-TAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGIC 485

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              + + +++  LC+   V EA  LF+ M   G+EPN  TY++L+DG C  G   +AM+L
Sbjct: 486 LDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKL 545

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+    +P+ VTY+T++NG  + G++++ + +L  M  +G+ P    Y  ++     
Sbjct: 546 LGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQ 605

Query: 344 IGKYQEAANFLDEMV 358
            G+   A      M+
Sbjct: 606 AGRTVAAKELYLRMI 620



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 136/300 (45%), Gaps = 18/300 (6%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME---TKACSPTVVTYTS 231
           A ++F  +  RG     +     ++ + R      A  LF  M      + +P + TY  
Sbjct: 46  AHQVFDRLLKRGDRASIFDLNRALSDVARASPAV-AISLFNRMPRAGATSAAPNIATYGI 104

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGV--EPNVFTYSSLMDGLCKGGCSSQAMEL-LQMMI 288
           +I    +   ++ A      + + G+  EPN    SS    LC  G  +  M++ L+ M 
Sbjct: 105 VIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSS-QGPLCTAGGRAMRMDIVLRRMP 163

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKP-DAGLYGKIISCFCDIGK 346
               +P++ +Y+ LL GLC +   Q+A+++L  M   +G  P D   Y  +I+     G+
Sbjct: 164 ELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQ 223

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
             +A +  D M+  G +P+ +T+S       +++  L KT   ++A QV+  M    +  
Sbjct: 224 LDKAYSLFDAMLDRGPSPDVVTYS-------SIISALSKTQAMDKATQVFTRMVKNGVMP 276

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D + Y+SL+  +C  G   ++  I  ++   G  PD  T++A+M  L    K  +A ++ 
Sbjct: 277 DCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIF 336



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 109/264 (41%), Gaps = 49/264 (18%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV---EPNVFTYS 265
           +A ++F  +  +    ++      ++ + ++ S   A+ LF  M   G     PN+ TY 
Sbjct: 45  DAHQVFDRLLKRGDRASIFDLNRALSDVARA-SPAVAISLFNRMPRAGATSAAPNIATYG 103

Query: 266 SLMDGLCKG-GCSSQAMELLQMMISK--RHRPNIVTYSTLLNGLCKEGKLQEAVEI-LDR 321
            ++ G C+  G    A   +  +I+   RH PN +  S+    LC  G     ++I L R
Sbjct: 104 IVI-GCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQ-GPLCTAGGRAMRMDIVLRR 161

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M   G KPD   Y  ++   CD    Q+A + L                 HI   +   +
Sbjct: 162 MPELGCKPDLFSYTILLKGLCDDKTSQQALDLL-----------------HIMADH---K 201

Query: 382 GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           G C                    +D + Y+++I    ++G + K+  + D ++  G  PD
Sbjct: 202 GRC-------------------PLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPD 242

Query: 442 EGTWSAVMTALWDRRKMRQAAELL 465
             T+S++++AL   + M +A ++ 
Sbjct: 243 VVTYSSIISALSKTQAMDKATQVF 266


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 223/483 (46%), Gaps = 70/483 (14%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D+ T+S+++  L  A +   A++LL ++ +    +    +  +  G  +  R  DA
Sbjct: 68  GYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDA 127

Query: 105 MRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           + +F  M   G C P   ++ ++L  L    ++  AF  + +M + G +P V S + L+ 
Sbjct: 128 LEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLD 187

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +G +D A +++ EM  + C PD   Y + + GLC+  ++ EA +  ++M TK   
Sbjct: 188 GLCK-AGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSK 246

Query: 224 PTVVTYTS-----------------LINGLCQSKSVEEAMRLFEEMRSK----------- 255
              V +++                 +I  LC+S  ++EA + FEEM S+           
Sbjct: 247 ADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNT 306

Query: 256 -------------GV--------------EPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
                        GV               PN+ TY+ ++D LCK     +A EL+  M 
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA 366

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +    P++VTYS L++GLCK GKL  A ++L+ M  +G+ PD+     I++     GK  
Sbjct: 367 NYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
            A + L+ M   G TP+ +T+       NT++ GLCK    + A      M     + D 
Sbjct: 427 YALSHLETMKARGSTPDLVTY-------NTLLDGLCKAGRIDEAITFLAKMVAAKCTPDV 479

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            +Y+ +IT  C+ G    +  I  E+V  G LPD   + +++  L      R   E L L
Sbjct: 480 FSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGL-----ARNGLEDLAL 534

Query: 468 ELM 470
           EL+
Sbjct: 535 ELL 537



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 197/377 (52%), Gaps = 17/377 (4%)

Query: 105 MRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           +R+FD + ++ G + +  +Y   L  L + N  +LA+  ++ M+  G  P   + +++++
Sbjct: 22  VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLR 81

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-C 222
            LCK +G +D A ++  ++   G   +  TY  +I+G C+  ++ +A E+FK M     C
Sbjct: 82  GLCK-AGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGC 140

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVT+ SL+ GLC  + + EA  LFE M   G EPNV +YS+L+DGLCK G   +A  
Sbjct: 141 VPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACR 200

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M+ K   P++V Y++ + GLCK  ++ EA +   +M  +G K DA  +  +I   C
Sbjct: 201 LWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILC 260

Query: 343 DIGKYQEAAN-FLDEMVLGGI------TPNRLTWSLH---IRIHNTVVQGLCKT----DP 388
             G  +EA N  ++ +   G+      T   +    H     + NT++  +CK+    D 
Sbjct: 261 KKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDG 320

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
              FQ   SM+      +  TY+ ++   CK   + ++  +V+E+   G  PD  T+SA+
Sbjct: 321 VLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSAL 380

Query: 449 MTALWDRRKMRQAAELL 465
           +  L    K+ +A +LL
Sbjct: 381 VDGLCKLGKLDRACDLL 397



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 213/485 (43%), Gaps = 82/485 (16%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V+ AL IF + +A    G   D  TF+ ++  L S  +   A  L + + K  C+     
Sbjct: 124 VDDALEIFKTMSA--GGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVIS 181

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G  +  R  +A R++++M E  C P   +Y + +  L + N++  A    R M 
Sbjct: 182 YSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMV 241

Query: 148 EIGIQPCVASLNVLIKALCKN----------------SGTMDAAFKIFREMPNRG----- 186
             G +    + + +I  LCK                 SG +D A K F EM +R      
Sbjct: 242 TKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSA 301

Query: 187 ---------------------------------CTPDSYTYGTLINGLCRLGKIYEAKEL 213
                                            C P+  TY  +++ LC+  ++ EA+EL
Sbjct: 302 ELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQEL 361

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
             EM     SP VVTY++L++GLC+   ++ A  L EEM  +GV P+ FT +S+++ L K
Sbjct: 362 VNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSK 421

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G    A+  L+ M ++   P++VTY+TLL+GLCK G++ EA+  L +M      PD   
Sbjct: 422 AGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFS 481

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------------------- 374
           Y  II+  C  G+   A     EMV  G+ P+ + +   +                    
Sbjct: 482 YTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSL 541

Query: 375 ------IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                 +H  VV GLCK      A +V   M +     D+ TY +++    K G + K+ 
Sbjct: 542 CKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKAR 601

Query: 428 RIVDE 432
           ++VD+
Sbjct: 602 QLVDD 606



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 187/377 (49%), Gaps = 24/377 (6%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A   F +M+  G  P   +Y  VL  L +  +L  A      +RE G++  V + +V+I 
Sbjct: 57  AYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116

Query: 164 ALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             CK S  +D A +IF+ M    GC PD  T+ +L+ GLC   ++ EA  LF+ M    C
Sbjct: 117 GCCKAS-RVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGC 175

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V++Y++L++GLC++  ++EA RL+EEM  K   P++  Y+S + GLCK    ++A +
Sbjct: 176 EPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACD 235

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGK-----------------LQEAVEILDRMKLQ 325
             + M++K  + + V +ST++  LCK+G                  L EA +  + M  +
Sbjct: 236 CCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISR 295

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
              P A L+  +I   C   +  +       M     +        ++  +N +V  LCK
Sbjct: 296 NHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMK----SMKEFYCPPNLETYNIMVDNLCK 351

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               + A ++   M N  +S D +TYS+L+   CK G + ++  +++E+  +G  PD  T
Sbjct: 352 AKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFT 411

Query: 445 WSAVMTALWDRRKMRQA 461
            ++++ AL    K+  A
Sbjct: 412 DASILNALSKAGKVDYA 428



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 212/451 (47%), Gaps = 30/451 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++H   T++  +  L  AN  + A +   ++ +      +  +  + RG  +      A
Sbjct: 33  GYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKA 92

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIK 163
             +  +++E G +    +Y  V+    + +++  A   ++ M   G   P V + N L+K
Sbjct: 93  KELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLK 152

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC     M  AF +F  M   GC P+  +Y TL++GLC+ G++ EA  L++EM  K+C 
Sbjct: 153 GLCSGE-RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCV 211

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG-------- 275
           P +V YTS + GLC++  V EA     +M +KG + +   +S+++  LCK G        
Sbjct: 212 PDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQ 271

Query: 276 -----CSS----QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
                C S    +A +  + MIS+ H P+   ++TL++ +CK  +L + V +  RMK   
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 327 ---LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
                P+   Y  ++   C   +  EA   ++EM   G++P+ +T+S        +V GL
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS-------ALVDGL 384

Query: 384 CKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK    +RA  +   M    +  DS T +S++    K G +  +   ++ +   G  PD 
Sbjct: 385 CKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDL 444

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            T++ ++  L    ++ +A   L   +  KC
Sbjct: 445 VTYNTLLDGLCKAGRIDEAITFLAKMVAAKC 475


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 192/373 (51%), Gaps = 16/373 (4%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  +M+  G EP   +   ++       Q+  +F     + ++G QP   +L  L+K
Sbjct: 71  AISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMK 130

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC   G +  +     ++  +G   +  +YGTL+NGLC++G+   A +  + +E  +  
Sbjct: 131 GLCL-KGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTG 189

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VV Y ++I+GLC+ K V EA   + EM ++G+ PNV TY++L+ G C  G  + A  L
Sbjct: 190 LNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSL 249

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI K   PN+ TY+ L++ LCKEGK++EA  +L  M  +G   D   Y  ++  FC 
Sbjct: 250 LNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCK 309

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMR 399
                +A     +M   GI PN+ T++        ++ GLCK     D  + FQ  L   
Sbjct: 310 NQNLDKATALFMKMKEWGIQPNKYTYT-------ALIDGLCKGGRLKDAQKLFQDLLV-- 360

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
            +   +D  TY+ +I   CK+G + ++  I  ++  +GC+P+  T+  ++ +L+ ++   
Sbjct: 361 -KGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLF-KKDEN 418

Query: 460 QAAELLLLELMNK 472
             AE LL E++ K
Sbjct: 419 DKAEKLLHEMIAK 431



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 178/360 (49%), Gaps = 9/360 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+  F+ M      P    +  +L  L +      A    + M   GI+P + +LN+LI
Sbjct: 35  DAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILI 94

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C + G M  +F +  ++   G  P++ T  TL+ GLC  G++ ++     ++  +  
Sbjct: 95  NCFC-HLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGF 153

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V+Y +L+NGLC+      A++    +       NV  Y++++DGLCK    ++A +
Sbjct: 154 QMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYD 213

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
               M ++   PN++TY+TL+ G C  G+L  A  +L+ M L+ + P+   Y  +I   C
Sbjct: 214 FYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALC 273

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
             GK +EA N L EM   G   + +T++       +++ G CK  + ++A  +++ M+  
Sbjct: 274 KEGKVKEAKNLLAEMHYRGQPADVVTYT-------SLLDGFCKNQNLDKATALFMKMKEW 326

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I  +  TY++LI   CK G +  + ++  +L++ GC  D  T++ ++  L     + +A
Sbjct: 327 GIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEA 386



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 167/318 (52%), Gaps = 1/318 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ +  T + ++  L    + + +    D+V  +   + +  + ++  G  ++     A
Sbjct: 117 GYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCA 176

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           ++    +++         Y T++  L ++  +  A+ FY  M   GI P V +   LI  
Sbjct: 177 IKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGG 236

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C  +G +  AF +  EM  +   P+ YTY  LI+ LC+ GK+ EAK L  EM  +    
Sbjct: 237 FCL-AGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPA 295

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYTSL++G C+++++++A  LF +M+  G++PN +TY++L+DGLCKGG    A +L 
Sbjct: 296 DVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLF 355

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           Q ++ K    ++ TY+ ++ GLCKEG L EA+ I  +M+  G  P+   +  II      
Sbjct: 356 QDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKK 415

Query: 345 GKYQEAANFLDEMVLGGI 362
            +  +A   L EM+  G+
Sbjct: 416 DENDKAEKLLHEMIAKGL 433



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 153/315 (48%), Gaps = 4/315 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++ +  + +V K++   D   A+   GF+ +  ++  +++ L    + R A   
Sbjct: 123 ITLTTLMKGLCLKGEVQKSVHFHDKVVAQ---GFQMNQVSYGTLLNGLCKIGETRCAIKF 179

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L  +      +   ++ +I  G  +     +A   + +M   G  P   +Y T++     
Sbjct: 180 LRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCL 239

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             QL  AF     M    I P V +  +LI ALCK  G +  A  +  EM  RG   D  
Sbjct: 240 AGQLTGAFSLLNEMILKNINPNVYTYAILIDALCK-EGKVKEAKNLLAEMHYRGQPADVV 298

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY +L++G C+   + +A  LF +M+     P   TYT+LI+GLC+   +++A +LF+++
Sbjct: 299 TYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDL 358

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             KG   +V TY+ ++ GLCK G   +A+ +   M      PN+VT+  ++  L K+ + 
Sbjct: 359 LVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDEN 418

Query: 313 QEAVEILDRMKLQGL 327
            +A ++L  M  +GL
Sbjct: 419 DKAEKLLHEMIAKGL 433



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 43/339 (12%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +D A   F  M     TP    +G ++  L ++     A  L K+ME K   P +VT  
Sbjct: 32  VVDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLN 91

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            LIN  C    +  +  +  ++   G +PN  T ++LM GLC  G   +++     ++++
Sbjct: 92  ILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQ 151

Query: 291 RHRPNIVTYSTLLNGLCKEGK-----------------------------------LQEA 315
             + N V+Y TLLNGLCK G+                                   + EA
Sbjct: 152 GFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEA 211

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
            +    M  +G+ P+   Y  +I  FC  G+   A + L+EM+L  I PN  T+++    
Sbjct: 212 YDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAI---- 267

Query: 376 HNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
              ++  LCK    +  +  L+ M  R    D +TY+SL+  FCK  ++ K+  +  ++ 
Sbjct: 268 ---LIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMK 324

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             G  P++ T++A++  L    +++ A +L    L+  C
Sbjct: 325 EWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGC 363


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 220/475 (46%), Gaps = 54/475 (11%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICRGYGRV 98
           A G     + F+ ++     ++ F  A  LL ++ K +C    +  +I + SIC G G +
Sbjct: 371 AEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSG-GEL 429

Query: 99  HRPLD---AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
             P+    A + +++M   G      + ++    L    + + A++    M   G  P  
Sbjct: 430 PGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDT 489

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           ++ + +I  LC N+  ++ AF +F+EM   G  PD YTY  LI+   + G I +A     
Sbjct: 490 STYSEVIGFLC-NASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLD 548

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM    C PTVVTYT+LI+   ++K V  A  LFE M +KG  PNV TY++L+DG CK G
Sbjct: 549 EMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSG 608

Query: 276 CSSQAMELLQMMISKR----------------HRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
              +A ++   M                     +PN+VTY  L++GLCK  K+++A ++L
Sbjct: 609 NIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLL 668

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS--------- 370
           + M + G +P+  +Y  +I  FC   K  EA     +MV  G  PN  T+S         
Sbjct: 669 ETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKD 728

Query: 371 -------------------LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
                               +I I+  ++ GL K    + A+++ L M  +    + +TY
Sbjct: 729 KRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTY 788

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I  F K G + K   +  E+   GC P+  T++ ++        + +A  LL
Sbjct: 789 TAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALL 843



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 207/475 (43%), Gaps = 70/475 (14%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDI---TEDIFLSICRGYGRVHRPLDAMRVFD 109
           ++ MIS L  A+ F  A D L+R+    C     T  I L  C    ++ R     R+  
Sbjct: 311 YNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGR---CKRILS 367

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
            M   GC P+   + +++    + +    A++  + M +   +P     N+LI ++C   
Sbjct: 368 MMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGG 427

Query: 170 ----------------------------------------GTMDAAFKIFREMPNRGCTP 189
                                                   G  + A+K+  EM   G  P
Sbjct: 428 ELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVP 487

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+ TY  +I  LC   ++  A  LFKEM+     P V TYT LI+   ++  +++A    
Sbjct: 488 DTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWL 547

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM   G EP V TY++L+    K    S A EL ++MI+K   PN++TY+ L++G CK 
Sbjct: 548 DEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKS 607

Query: 310 GKLQEAVEILDRMKLQGLKPDAGL----------------YGKIISCFCDIGKYQEAANF 353
           G +++A +I  RM+     PD  +                YG ++   C   K ++A + 
Sbjct: 608 GNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDL 667

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
           L+ M + G  PN +       +++ ++ G CK    + A +V+  M     + +  TYSS
Sbjct: 668 LETMFVDGCEPNTI-------VYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSS 720

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           LI    K   +    +++ +++ + C P+   ++ ++  L    K  +A +L+L+
Sbjct: 721 LIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLM 775



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 220/503 (43%), Gaps = 63/503 (12%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++V+  +     V  A  +F         G   D  T++++I     A   + A + L
Sbjct: 491 TYSEVIGFLCNASRVENAFFLFKEMKG---TGVVPDVYTYTILIDCFSKAGIIKQAHNWL 547

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           D + ++ C+ T   + ++   Y +  +   A  +F+ M   GC P   +Y  ++    + 
Sbjct: 548 DEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKS 607

Query: 134 NQLKLAFRFYRHMR----------------EIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
             ++ A + Y  MR                 +  +P V +   L+  LCK     DA   
Sbjct: 608 GNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDAR-D 666

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +   M   GC P++  Y  LI+G C+  K+ EA+E+F +M     +P V TY+SLI+ L 
Sbjct: 667 LLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLF 726

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + K ++  +++  +M      PN+  Y+ ++DGL K   + +A +L+ MM  K  +PN+V
Sbjct: 727 KDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVV 786

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+ +++G  K GK+ + +E+   M  +G  P+   Y  +I+  C  G   EA   L+EM
Sbjct: 787 TYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM 846

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQG-----------LCKTDPNRA--------------- 391
                   +  W  H+  +  V++G           L + + N +               
Sbjct: 847 -------KQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFV 899

Query: 392 ----FQVYLSMRNRSISVD-SLT-----YSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
                +V L +    IS   S+      Y+SLI  F     I  +  +  +++ DG +PD
Sbjct: 900 KAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPD 959

Query: 442 EGTWSAVMTALWDRRKMRQAAEL 464
            GT+  ++  L   R+  +A +L
Sbjct: 960 LGTFVHLLMGLIRVRRWEEALQL 982



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 197/436 (45%), Gaps = 18/436 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+ H  + +  ++      +  R  E+ L  +  +  ++   +   + R   R      A
Sbjct: 166 GYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVA 225

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +    ++K+FG +PT  +Y  ++ + +  ++L  A   +R M E+G+     +L    +A
Sbjct: 226 LEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQA 285

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK     +A   I +E       P++  Y  +I+GLC      EA +    M + +C P
Sbjct: 286 LCKVGKWREALSLIEKE----DFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIP 341

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY  L+ G    K +    R+   M ++G  P+   ++SL+   CK    S A +LL
Sbjct: 342 NVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLL 401

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV--EILDRMKLQGLKPDAGLYG-KIIS-- 339
           + M     +P  V Y+ L+  +C  G+L   V  E+ ++   + L     L    ++S  
Sbjct: 402 KKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFA 461

Query: 340 -CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
            C C  GK+++A   + EM+  G  P+  T+S        V+  LC       AF ++  
Sbjct: 462 RCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYS-------EVIGFLCNASRVENAFFLFKE 514

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M+   +  D  TY+ LI CF K G I ++   +DE+V DGC P   T++ ++ A    +K
Sbjct: 515 MKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKK 574

Query: 458 MRQAAELLLLELMNKC 473
           +  A EL  L +   C
Sbjct: 575 VSVANELFELMIAKGC 590



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 40/343 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  ++  L  A++ + A DLL+ +  + C+    ++ ++  G+ +  +  +A  VF KM
Sbjct: 647 TYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM 706

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E G  P   +Y +++  L ++ +L L  +    M E    P +     +I  L K + T
Sbjct: 707 VEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D A+K+   M  +GC P+  TY  +I+G  + GK+ +  ELF+EM +K C+P  VTYT 
Sbjct: 767 -DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTV 825

Query: 232 LINGLCQSKSVEEAMRLFEEMRS---------------------------------KGVE 258
           LIN  C +  ++EA  L EEM+                                   G  
Sbjct: 826 LINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSA 885

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR----HRPNIVTYSTLLNGLCKEGKLQE 314
           P +  Y  L+D   K G    A+EL + +IS       + N+  Y++L+       K+  
Sbjct: 886 PIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNL--YTSLIYSFSYASKIGH 943

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           A E+   M   G+ PD G +  ++     + +++EA    D +
Sbjct: 944 AFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSL 986


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 196/376 (52%), Gaps = 11/376 (2%)

Query: 91  ICRGY-GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           +C G   R+    +A   + ++ + G  P  + +  ++   V   +L  A + +  MR  
Sbjct: 156 VCSGLMSRLPSTPEAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR- 214

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            +QP V + N LI  +C+ +  +DA   +++EM + G  PD YTYG LI G CR G++  
Sbjct: 215 SVQPTVVTFNTLISGMCR-ARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMEN 273

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A ++F EM     +P  V +T+LI+  C+  +V   M L+++MR +GV P++  Y++L++
Sbjct: 274 AVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVN 333

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC+      A  +++ M +   +P+ VTY+TL++G CK+GKL  A++I  +M  + +  
Sbjct: 334 GLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSL 393

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDP 388
           D   Y  +IS     G+  +A   L EM+   + P+  T+++       V+   C K D 
Sbjct: 394 DEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTM-------VIDAFCRKGDV 446

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
              F++   M+N+      +TY+ ++   CK G +  +  ++  ++  G  PD+ T++ +
Sbjct: 447 KTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNIL 506

Query: 449 MTALWDRRKMRQAAEL 464
           +       K+  + EL
Sbjct: 507 LDGQCKHGKVANSEEL 522



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 178/340 (52%), Gaps = 11/340 (3%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A+ FY  + + G+ P     NVL++   +  G + +A K+F EM  R   P   T+ TLI
Sbjct: 170 AYTFYLQLLDAGMAPETRLFNVLMRDFVR-LGELVSARKVFDEM-RRSVQPTVVTFNTLI 227

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +G+CR   +     L+KEM      P V TY +LI G C++  +E A+++F EMR  GV 
Sbjct: 228 SGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVN 287

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PN   +++L+D  CK G  +  M+L Q M  +   P++V Y+ L+NGLC+   L+ A  I
Sbjct: 288 PNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESI 347

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           ++ MK  GLKPD   Y  +I   C  GK   A +   +M    ++ + +T++        
Sbjct: 348 VEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYT-------A 400

Query: 379 VVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ GL K   P  A +V   M   ++  D+ TY+ +I  FC+KGD+    +++ E+   G
Sbjct: 401 LISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKG 460

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
             P   T++ +M  L    +M+  A++LL  ++N  V  +
Sbjct: 461 KKPGVVTYNVIMNGLCKLGQMKN-ADMLLHAMLNIGVSPD 499



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 4/206 (1%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  + ++MK  G +P   +Y T++    ++ +L +A    + M E  +     +   LI 
Sbjct: 344 AESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALIS 403

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L K    +DA  ++ REM      PD+ TY  +I+  CR G +    +L KEM+ K   
Sbjct: 404 GLSKAGRPVDAE-RVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKK 462

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY  ++NGLC+   ++ A  L   M + GV P+  TY+ L+DG CK G  + + EL
Sbjct: 463 PGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEEL 522

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKE 309
                SK   P+   Y++L++ L K+
Sbjct: 523 ES---SKGMVPDFAVYTSLISELAKK 545



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 4/199 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ +I       +   A D+  ++ +++  + E  + ++  G  +  RP+DA
Sbjct: 355 GLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDA 414

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            RV  +M E   EP   +Y  V+     +  +K  F+  + M+  G +P V + NV++  
Sbjct: 415 ERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNG 474

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK  G M  A  +   M N G +PD  TY  L++G C+ GK+  ++EL     +K   P
Sbjct: 475 LCK-LGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEEL---ESSKGMVP 530

Query: 225 TVVTYTSLINGLCQSKSVE 243
               YTSLI+ L + K  +
Sbjct: 531 DFAVYTSLISELAKKKPAK 549


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 202/433 (46%), Gaps = 66/433 (15%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           KM  FG  P   +   V+      N++  A      + ++G QP  A+   L++ LC   
Sbjct: 81  KMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCV-V 139

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +  A  +F +M   G  P+  TYGTL+NGLC+  ++ EA  LF EM  K  SP + TY
Sbjct: 140 GKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTY 199

Query: 230 TSLI-----------------------------------NGLCQSKSVEEAMRLFEEMRS 254
            SLI                                   + LC+   V EA  + + M  
Sbjct: 200 NSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQ 259

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            GVEP+V TY++LMDG C      +A+++  MM+      N+V+Y+TL+NG CK  ++ +
Sbjct: 260 GGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDK 319

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL--- 371
           A+ + + M  Q L P+   Y  +I   C +G+ Q+A    +EMV  G  PN +T+S+   
Sbjct: 320 AMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLD 379

Query: 372 -------------------------HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV 405
                                     ++++N  + G+C+  D   A  ++ ++  R +  
Sbjct: 380 YLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQP 439

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D  T++ +I   CK+G + +++++  E+  +GCL +  T++ +   L    K  +A + L
Sbjct: 440 DVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQ-L 498

Query: 466 LLELMNKCVEAEV 478
           L E++ +   A+V
Sbjct: 499 LEEMLARGFSADV 511



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 189/412 (45%), Gaps = 42/412 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D +TF+ ++  L    +   A D+ D++  E        + ++  G  +  +  +A
Sbjct: 121 GHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEA 180

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + +F +M   G  P   +Y +++  L    + K        M +  I P V SLN+++ A
Sbjct: 181 LNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDA 240

Query: 165 LCKNS----------------------------------GTMDAAFKIFREMPNRGCTPD 190
           LCK                                      MD A K+F  M   GC  +
Sbjct: 241 LCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCN 300

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
             +Y TLING C++ +I +A  LF+EM  +   P  +TY++LI+GLC    +++A+ LF 
Sbjct: 301 VVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFN 360

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           EM + G  PN+ TYS L+D LCK    ++AM LL+ +      P++  Y+  ++G+C+ G
Sbjct: 361 EMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAG 420

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L+ A ++   +  +GL+PD   +  +I   C  G   EA+    EM   G   N  T+ 
Sbjct: 421 DLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTY- 479

Query: 371 LHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
                 NT+ QGL + +  +RA Q+   M  R  S D  T + L+      G
Sbjct: 480 ------NTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDG 525



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 171/361 (47%), Gaps = 30/361 (8%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N L  A   +  M  +   P +     L+ ++ K          + ++M + G  PD YT
Sbjct: 35  NTLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMK-HYSTVLSLSKKMDSFGIPPDVYT 93

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
              +IN  C L ++  A  +  ++      P   T+T+L+ GLC    + EA+ +F++M 
Sbjct: 94  LTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMV 153

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            +G +PNV TY +LM+GLCK    ++A+ L   MI+K   P+I TY++L++ LC   + +
Sbjct: 154 GEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWK 213

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
               +L+ M    + P+      ++   C  GK  EA + +D M+ GG+ P+ +T++  +
Sbjct: 214 HVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALM 273

Query: 374 RIH----------------------------NTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
             H                            NT++ G CK    ++A  ++  M  + + 
Sbjct: 274 DGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELI 333

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            +++TYS+LI   C  G +  +  + +E+V  G +P+  T+S ++  L    ++ +A  L
Sbjct: 334 PNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMAL 393

Query: 465 L 465
           L
Sbjct: 394 L 394



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 144/304 (47%), Gaps = 41/304 (13%)

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
           T+D A   F  M +    P  + +  L+  + ++        L K+M++    P V T T
Sbjct: 36  TLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLT 95

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            +IN  C    V+ A+ +  ++   G +P+  T+++L+ GLC  G   +A+++   M+ +
Sbjct: 96  IVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGE 155

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN+VTY TL+NGLCK+ +L EA+ +   M  +G+ PD   Y  +I   C++ +++  
Sbjct: 156 GFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHV 215

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTY 410
              L+EMV   I PN ++ +                                I VD+L  
Sbjct: 216 TTLLNEMVKSKIMPNVVSLN--------------------------------IVVDAL-- 241

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
                  CK+G + ++  +VD ++  G  PD  T++A+M     R +M +A ++  + + 
Sbjct: 242 -------CKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVR 294

Query: 471 NKCV 474
           N CV
Sbjct: 295 NGCV 298



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 171/384 (44%), Gaps = 45/384 (11%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++  +  ++ + +AL +F    A+   G   D  T++ +I  L +  +++    L
Sbjct: 162 VTYGTLMNGLCKDRQLTEALNLFSEMIAK---GISPDIFTYNSLIHALCNLCEWKHVTTL 218

Query: 73  LDRVNKEKC---DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
           L+ + K K     ++ +I +      G+V    +A  V D M + G EP   +Y  ++  
Sbjct: 219 LNEMVKSKIMPNVVSLNIVVDALCKEGKV---TEAHDVVDMMIQGGVEPDVVTYAALMDG 275

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
               +++  A + +  M   G    V S N LI   CK    +D A  +F EM  +   P
Sbjct: 276 HCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQ-RIDKAMYLFEEMCRQELIP 334

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL----------------- 232
           ++ TY TLI+GLC +G++ +A  LF EM      P +VTY+ L                 
Sbjct: 335 NTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALL 394

Query: 233 ------------------INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
                             I+G+C++  +E A  LF  +  +G++P+V+T++ ++ GLCK 
Sbjct: 395 KAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKR 454

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G   +A +L + M       N  TY+T+  GL +  K   A+++L+ M  +G   D    
Sbjct: 455 GLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTT 514

Query: 335 GKIISCFCDIGKYQEAANFLDEMV 358
             ++    D G  Q     L E +
Sbjct: 515 ALLVKMLSDDGLDQSVKQILCEFM 538


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 190/373 (50%), Gaps = 10/373 (2%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           GY R+ R  D  R    M E G      +   +++   E+  +  AF +++   ++G+ P
Sbjct: 237 GYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNP 296

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            + + + LI  LCK  G++  AF++  EM  +G  P+ YT+  LI+GLC+ G   +A  L
Sbjct: 297 NLINFSSLINGLCK-IGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRL 355

Query: 214 F-KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           F K + +    P V TYT +ING C+ + +  A  L   M+ +G+ PN  TY+ L+DG C
Sbjct: 356 FLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHC 415

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G   +A EL+ +M  +   PNI TY+ +++GLCK+G+  EA ++L R    GL  D  
Sbjct: 416 KAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKV 475

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            Y  +IS FC     ++A      M   G+ P+  T+       N ++   C+      +
Sbjct: 476 TYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTY-------NVLIATFCRQKKVEES 528

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            +++       +     TY+S+I  +C+ G I  + +   ++   GC PD  T+ A+++ 
Sbjct: 529 EKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISG 588

Query: 452 LWDRRKMRQAAEL 464
           L +  K+ +A +L
Sbjct: 589 LCNESKLDEACQL 601



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 216/433 (49%), Gaps = 26/433 (6%)

Query: 49  DNSTFSLMISKLVSANQF----RPAEDLLDR---VNKEKCDITEDIFLSICRGYGRVHRP 101
           D++++ LM+       +     R  +D+++R   V+   C +     +S     G V+R 
Sbjct: 227 DSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTL----MISTFSEKGFVNR- 281

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A   F K  + G  P   ++ +++  L +   +K AF     M   G +P V +   L
Sbjct: 282 --AFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTAL 339

Query: 162 IKALCKNSGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           I  LCK  G  + AF++F ++  +    P+ YTY  +ING C+  K+  A+ L   M+ +
Sbjct: 340 IDGLCKK-GWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQ 398

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P   TYT LI+G C++ +   A  L + M  +G  PN+FTY++++DGLCK G   +A
Sbjct: 399 GLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEA 458

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            +LL+  +      + VTY+ L++  C++   ++A+ I  RM   GL+PD   Y  +I+ 
Sbjct: 459 YKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIAT 518

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
           FC   K +E+    +E V  G+ P + T++       +++ G C+    + A + +  MR
Sbjct: 519 FCRQKKVEESEKLFEEAVGLGLLPTKETYT-------SMICGYCRDGHISSAIKFFHKMR 571

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +     DS+TY +LI+  C +  + ++ ++ + ++ +G  P E T   V  A    ++  
Sbjct: 572 DYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVT--RVTLAYEYCKQGD 629

Query: 460 QAAELLLLELMNK 472
            A  +++LE + K
Sbjct: 630 SATAMIILERLEK 642



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 157/335 (46%), Gaps = 48/335 (14%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +D A K+F EM +R   PDS +Y  ++ G CR+G+I +     K+M  +  +    T 
Sbjct: 207 GFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATC 266

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           T +I+   +   V  A   F++    G+ PN+  +SSL++GLCK G   QA E+L+ M+ 
Sbjct: 267 TLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVR 326

Query: 290 K------------------------------------RHRPNIVTYSTLLNGLCKEGKLQ 313
           K                                     ++PN+ TY+ ++NG CKE KL 
Sbjct: 327 KGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLN 386

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            A  +L RMK QGL P+   Y  +I   C  G +  A   +D M   G TPN  T+    
Sbjct: 387 RAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTY---- 442

Query: 374 RIHNTVVQGLCKTDPNRAFQVYLSMR---NRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
              N ++ GLCK    R  + Y  +R      +  D +TY+ LI+ FC++ D  ++  I 
Sbjct: 443 ---NAIIDGLCK--KGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIF 497

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +   G  PD  T++ ++     ++K+ ++ +L 
Sbjct: 498 SRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLF 532



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 134/281 (47%), Gaps = 1/281 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ++ ++ +  T++ MI+      +   AE LL R+ ++      + +  +  G+ +     
Sbjct: 362 SDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFG 421

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  + D M + G  P   +Y  ++  L ++ +   A++  R   + G+     +  +LI
Sbjct: 422 RAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILI 481

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+ +     A  IF  M   G  PD +TY  LI   CR  K+ E+++LF+E      
Sbjct: 482 SEFCRQTDN-KQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGL 540

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT  TYTS+I G C+   +  A++ F +MR  G +P+  TY +L+ GLC      +A +
Sbjct: 541 LPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQ 600

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           L + MI     P  VT  TL    CK+G    A+ IL+R++
Sbjct: 601 LYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLE 641



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 137/288 (47%), Gaps = 8/288 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPL 102
           G   + +T++ +I     A  F  A +L+D + KE    T +IF   +I  G  +  R  
Sbjct: 399 GLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKE--GFTPNIFTYNAIIDGLCKKGRFP 456

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A ++  +  + G      +Y  +++    +   K A   +  M ++G+QP + + NVLI
Sbjct: 457 EAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLI 516

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C+     ++  K+F E    G  P   TY ++I G CR G I  A + F +M    C
Sbjct: 517 ATFCRQKKVEESE-KLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGC 575

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  +TY +LI+GLC    ++EA +L+E M   G+ P   T  +L    CK G S+ AM 
Sbjct: 576 KPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMI 635

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           +L+ +  K     I T +TL+  LC E K+  A     ++  + L  D
Sbjct: 636 ILERLEKKLW---IRTVNTLIRKLCSEKKVGVAALFFHKLLDKDLNVD 680


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 196/411 (47%), Gaps = 47/411 (11%)

Query: 90  SICRGYGRVHRPLDAMRV-FDKMKEFGCEPTPKSYITVLAI------------------- 129
           S+ RG     R  +A+ V F +M E GC P   SY TVL                     
Sbjct: 143 SLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVK 202

Query: 130 ------------------LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
                             L +E ++  A   +  M + G+ P V + N +I ALCK +  
Sbjct: 203 QGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCK-ARA 261

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  I R+M   G  PD+ TY TLI+G   LG+  +A  +FKEM ++   P  VT ++
Sbjct: 262 VDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCST 321

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            +  LC+   +EEA   F+ M +KG + N+ +YS+L+ G    GC      L  +M+   
Sbjct: 322 FVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDG 381

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             PN   ++ L+NG  K G ++EA+ I + M+ +GL PD   Y  +I  FC +G   +A 
Sbjct: 382 IVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAM 441

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTY 410
           +  + M+  G+ PN         ++  ++QG C   D  +A ++   +RN+ +    L++
Sbjct: 442 DKFNHMIDKGVEPN-------FAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSF 494

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +SLI   CK+G + ++ RI D ++  G   D   +++++       KM +A
Sbjct: 495 ASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEA 545



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 209/441 (47%), Gaps = 12/441 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +  + V+  +  E  V +A  +F   T +   G   +  T++ +I  L  A     A+ +
Sbjct: 212 VVYSTVVHGLFKEGKVGEACDLFHEMTQQ---GVPPNVVTYNSVIHALCKARAVDKAQGI 268

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++           + ++  GY  + +   A+R+F +M   G  P   +  T +A L +
Sbjct: 269 LRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCK 328

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             +++ A  F+  M   G +  + S + L+         +D +  +F  M   G  P+ +
Sbjct: 329 HGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMS-NLFNLMVRDGIVPNQH 387

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
            +  L+NG  + G + EA  +F++M+ +  +P V+TY ++I+  C+  S+++AM  F  M
Sbjct: 388 VFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHM 447

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             KGVEPN   Y  L+ G C  G   +A EL+  + +K   P I+++++L+N LCKEG++
Sbjct: 448 IDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRV 507

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA  I D +   G K D  ++  +I  +C IGK  EA    D MV  GI P+ +T+   
Sbjct: 508 FEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTY--- 564

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
                T+V G CK    +    ++  + ++ +   + TY  ++      G    +  +  
Sbjct: 565 ----GTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQ 620

Query: 432 ELVLDGCLPDEGTWSAVMTAL 452
           E++  G      T+S ++T L
Sbjct: 621 EMIESGIAVTIPTYSILLTGL 641



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 187/393 (47%), Gaps = 46/393 (11%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           PT  +Y  ++       +L LAF F+  +   G++  V  ++ L++ LC    T +A   
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160

Query: 178 IFREMPNRGCTPD--SYT-----------------------------------YGTLING 200
           +F  MP  GC PD  SY+                                   Y T+++G
Sbjct: 161 LFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHG 220

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           L + GK+ EA +LF EM  +   P VVTY S+I+ LC++++V++A  +  +M   GV+P+
Sbjct: 221 LFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPD 280

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY++L+ G    G   QA+ + + M S+   PN VT ST +  LCK G+++EA E  D
Sbjct: 281 NVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFD 340

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M  +G K +   Y  ++  +   G   + +N  + MV  GI PN+        + N +V
Sbjct: 341 SMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQ-------HVFNILV 393

Query: 381 QGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            G  K    R A  ++  M+ R ++ D LTY ++I  FC+ G +  +    + ++  G  
Sbjct: 394 NGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVE 453

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           P+   +  ++        + +A E L+ E+ NK
Sbjct: 454 PNFAVYQCLIQGFCTHGDLVKAEE-LVYEIRNK 485



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 191/422 (45%), Gaps = 7/422 (1%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   +   F+++++        R A  + + + K   +     +L++   + R+    D
Sbjct: 380 DGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDD 439

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM  F+ M + G EP    Y  ++        L  A      +R  G+ PC+ S   LI 
Sbjct: 440 AMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLIN 499

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK     +A  +IF  +   G   D   + +LI+G C +GK+ EA  +   M +    
Sbjct: 500 HLCKEGRVFEAQ-RIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIE 558

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P +VTY +L+NG C++  +++ + LF E+  KGV+P  FTY  ++DGL   G ++ A E+
Sbjct: 559 PDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEM 618

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            Q MI       I TYS LL GLC+    +EA+ +  ++    +K D  +   +IS    
Sbjct: 619 FQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFK 678

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
             + +EA      +   G+ P   T++  I + N + +G        A  V+  M    +
Sbjct: 679 ARRREEAEGLFASIPDYGLVPTVQTYT--IMMENLIKEG----SVEEAEGVFSVMLKSGL 732

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           S  S   + ++    +KG+I K+   +  +     L +  T S +++    + K R+   
Sbjct: 733 SPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTASMLLSLFSCKGKHREHLN 792

Query: 464 LL 465
           LL
Sbjct: 793 LL 794



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 133/256 (51%), Gaps = 9/256 (3%)

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           R   P  YTY  LI+  CR  ++  A   F  +  +     V+  +SL+ GLC +K  +E
Sbjct: 97  RVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDE 156

Query: 245 AMR-LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR-P-NIVTYST 301
           A+  LF  M   G  P+  +YS+++  +C  G S  A+++L+M + +    P N+V YST
Sbjct: 157 AVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYST 216

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           +++GL KEGK+ EA ++   M  QG+ P+   Y  +I   C      +A   L +MV  G
Sbjct: 217 VVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNG 276

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
           + P+ +T++  I  ++T+ Q        +A +++  M +R +  +++T S+ +   CK G
Sbjct: 277 VQPDNVTYNTLIHGYSTLGQW------KQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHG 330

Query: 422 DIHKSARIVDELVLDG 437
            I ++    D ++  G
Sbjct: 331 RIEEAREFFDSMLAKG 346


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 182/340 (53%), Gaps = 10/340 (2%)

Query: 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174
           G E +   Y  +L  LV  NQ+  A  F+R    +       S N+LI+ LC+  G +D 
Sbjct: 197 GVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCR-IGKVDK 255

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTVVTYTSLI 233
           AF++F EM   GC+PD  TY TLING CR+ ++    +L KE+ +K   SP VVTYTS+I
Sbjct: 256 AFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSII 315

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +G C+   +E+A  LF  M S G++PN FT++ L++G  K G    A  + + M+     
Sbjct: 316 SGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCP 375

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           P+I+T+++L++G C+ GK++ ++++   +  + L P+   +  + +  C   +  EA  F
Sbjct: 376 PDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGF 435

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSS 412
           L ++    I            ++N V+ G CK  + + A  +   M  +    D +TY+ 
Sbjct: 436 LRDLKWRHIVAQPF-------MYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTI 488

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           LI   C KG + ++  I + ++  GC PD  T +++++ L
Sbjct: 489 LIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCL 528



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 179/377 (47%), Gaps = 15/377 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  V+D M   G  P      +VL  LV        F   R   + G++  +   N L+ 
Sbjct: 156 AKAVYDCMNIDGHSPDA----SVLGFLVSSATDAGKFNIARTWVD-GVEFSLVVYNKLLN 210

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L + +  +D A   FRE        DS ++  LI GLCR+GK+ +A ELF EM    CS
Sbjct: 211 QLVRGN-QVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCS 269

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-VEPNVFTYSSLMDGLCKGGCSSQAME 282
           P V+TY +LING C+   V+    L +E+ SK  + P+V TY+S++ G CK G   +A  
Sbjct: 270 PDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASI 329

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   MIS   +PN  T++ L+NG  K G +  A  + + M L G  PD   +  +I   C
Sbjct: 330 LFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHC 389

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNR 401
             GK + +     E+    ++PN  T+++       +   LCK +     + +L  ++ R
Sbjct: 390 RTGKVERSLKLWHELNARNLSPNEYTFAI-------LTNALCKENRLHEARGFLRDLKWR 442

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I      Y+ +I  FCK G++ ++  I+ E+    C PD+ T++ ++     + ++ +A
Sbjct: 443 HIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEA 502

Query: 462 AELLLLELMNKCVEAEV 478
             +    L   C    +
Sbjct: 503 ISIFNRMLGTGCAPDSI 519



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 165/335 (49%), Gaps = 12/335 (3%)

Query: 20  QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE 79
           QL+R  + V++A+  F      +      D+ +F+++I  L    +   A +L + +   
Sbjct: 211 QLVRGNQ-VDEAVCFFREQMGLHG---PFDSCSFNILIRGLCRIGKVDKAFELFNEMRGF 266

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF----GCEPTPKSYITVLAILVEENQ 135
            C      + ++  G+ RV+   +  R  D +KE        P   +Y ++++   +  +
Sbjct: 267 GCSPDVITYNTLINGFCRVN---EVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGK 323

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           ++ A   + +M   GI+P   + N+LI    K  G M +A  ++ EM   GC PD  T+ 
Sbjct: 324 MEKASILFNNMISSGIKPNAFTFNILINGFGK-VGDMVSAENMYEEMLLLGCPPDIITFT 382

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           +LI+G CR GK+  + +L+ E+  +  SP   T+  L N LC+   + EA     +++ +
Sbjct: 383 SLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWR 442

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
            +    F Y+ ++DG CK G   +A  +L  M  KR +P+ +TY+ L+ G C +G+L EA
Sbjct: 443 HIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEA 502

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
           + I +RM   G  PD+     +ISC    G   EA
Sbjct: 503 ISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEA 537



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 163/336 (48%), Gaps = 18/336 (5%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVA--SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           N  +LA +F++ +  + +  C +  + + L+++L +  G  ++A  ++  M   G +PD+
Sbjct: 115 NNPELALKFFQ-LSRVNLNLCHSFRTYSFLLRSLSE-MGFHESAKAVYDCMNIDGHSPDA 172

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
              G L++     GK   A+     +E      ++V Y  L+N L +   V+EA+  F E
Sbjct: 173 SVLGFLVSSATDAGKFNIARTWVDGVEF-----SLVVYNKLLNQLVRGNQVDEAVCFFRE 227

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
                   +  +++ L+ GLC+ G   +A EL   M      P+++TY+TL+NG C+  +
Sbjct: 228 QMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNE 287

Query: 312 LQEAVEIL-DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +    ++L + +    L PD   Y  IIS +C +GK ++A+   + M+  GI PN  T+ 
Sbjct: 288 VDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTF- 346

Query: 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N ++ G  K  D   A  +Y  M       D +T++SLI   C+ G + +S ++
Sbjct: 347 ------NILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKL 400

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             EL      P+E T++ +  AL    ++ +A   L
Sbjct: 401 WHELNARNLSPNEYTFAILTNALCKENRLHEARGFL 436



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 110/243 (45%), Gaps = 1/243 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           N    D  T++ +IS      +   A  L + +           F  +  G+G+V   + 
Sbjct: 302 NDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVS 361

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  ++++M   GC P   ++ +++       +++ + + +  +    + P   +  +L  
Sbjct: 362 AENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTN 421

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           ALCK +  +  A    R++  R      + Y  +I+G C+ G + EA  +  EME K C 
Sbjct: 422 ALCKEN-RLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCK 480

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  +TYT LI G C    + EA+ +F  M   G  P+  T +SL+  L K G  ++A  +
Sbjct: 481 PDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEAYRI 540

Query: 284 LQM 286
           +Q+
Sbjct: 541 MQI 543


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 218/426 (51%), Gaps = 20/426 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSI-CRGYGRVHR 100
           GF+ D  +++ ++  L +A ++   E+L   + ++ C   ++T D+ +   CRG G V R
Sbjct: 276 GFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG-GMVER 334

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A++V ++M   GC         V+  + ++ ++  AF+F  +M   G  P   S   
Sbjct: 335 ---AIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTT 391

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++K LC+     DA  ++ +EM  + C P+  T+ T I  LC+ G I +A  L ++M   
Sbjct: 392 VLKGLCRAERWEDAK-ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEH 450

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C   +VTY +L+NG C    V+ A+ LF  M  K   PN  TY++L+ GLC       A
Sbjct: 451 GCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAA 507

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  M+ K   PN+VT++ L++  C++G + EA+E++++M   G  P+   Y  ++  
Sbjct: 508 AELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDG 567

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMR 399
                  +EA   L  +V  G++P+ +T+S       +++  L + D    A +++  ++
Sbjct: 568 ITKDCNSEEALELLHGLVSNGVSPDIVTYS-------SIIGVLSREDRVEEAIKMFHIVQ 620

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           +  +   ++ Y+ ++   CK+ +   +      +V +GC+P+E T+  ++  L +   ++
Sbjct: 621 DLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLK 680

Query: 460 QAAELL 465
           +  +LL
Sbjct: 681 ETRDLL 686



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 196/398 (49%), Gaps = 17/398 (4%)

Query: 79  EKCDITEDIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           E+     D+F   ++  GY R  + LDA R    +      P   +Y  ++  L +  ++
Sbjct: 136 ERSGTAVDVFAYNTLVAGYCRYGQ-LDAARRL--IASMPVAPDAYTYTPIIRGLCDRGRV 192

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
             A      M   G QP V +  VL++A+CK++G    A ++  EM  +GCTP+  TY  
Sbjct: 193 GEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG-FGQAMEVLDEMRAKGCTPNIVTYNV 251

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +ING+CR G++ +A+E    + +    P  V+YT+++ GLC +K  E+   LF EM  K 
Sbjct: 252 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 311

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
             PN  T+  L+   C+GG   +A+++L+ M       N    + ++N +CK+G++ +A 
Sbjct: 312 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 371

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           + L+ M   G  PD   Y  ++   C   ++++A   L EMV     PN +T+       
Sbjct: 372 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTF------- 424

Query: 377 NTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           NT +  LC K    +A  +   M      V+ +TY++L+  FC +G +  +  +   +  
Sbjct: 425 NTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM-- 482

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             C P+  T++ ++T L +  ++  AAELL   L   C
Sbjct: 483 -PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDC 519



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 185/360 (51%), Gaps = 14/360 (3%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V +A+ + +  +    +G   + +  +++I+ +    +   A   L+ +    C      
Sbjct: 332 VERAIQVLEQMSG---HGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS 388

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++ +G  R  R  DA  +  +M    C P   ++ T + IL ++  ++ A      M 
Sbjct: 389 YTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS 448

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G +  + + N L+   C   G +D+A ++F  MP   C P++ TY TL+ GLC   ++
Sbjct: 449 EHGCEVNIVTYNALVNGFCVQ-GRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERL 504

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A EL  EM  K C+P VVT+  L++  CQ   ++EA+ L E+M   G  PN+ TY++L
Sbjct: 505 DAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTL 564

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG+ K   S +A+ELL  ++S    P+IVTYS+++  L +E +++EA+++   ++  G+
Sbjct: 565 LDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGM 624

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           +P A +Y KI+   C       A +F   MV  G  PN LT+        T+++GL   D
Sbjct: 625 RPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYI-------TLIEGLANED 677



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 167/341 (48%), Gaps = 12/341 (3%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A R        G  P V     LI+ LC+   T DAA ++ R     G   D + Y TL+
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAA-RVLRAAERSGTAVDVFAYNTLV 151

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
            G CR G++  A+ L   M     +P   TYT +I GLC    V EA+ L ++M  +G +
Sbjct: 152 AGYCRYGQLDAARRLIASMPV---APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 208

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           P+V TY+ L++ +CK     QAME+L  M +K   PNIVTY+ ++NG+C+EG++ +A E 
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 268

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           L+R+   G +PD   Y  ++   C   ++++      EM+     PN +T+ + +R    
Sbjct: 269 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRF--- 325

Query: 379 VVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
                C+     RA QV   M     + ++   + +I   CK+G +  + + ++ +   G
Sbjct: 326 ----FCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG 381

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           C PD  +++ V+  L    +   A ELL   +   C   EV
Sbjct: 382 CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEV 422



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 161/340 (47%), Gaps = 10/340 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           G   D  +++ ++  L  A ++  A++LL  + ++ C   ++T + F+ I    G + + 
Sbjct: 381 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQ- 439

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A  + ++M E GCE    +Y  ++     + ++  A   +  M     +P   +   L
Sbjct: 440 --ATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTL 494

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  LC N+  +DAA ++  EM  + C P+  T+  L++  C+ G + EA EL ++M    
Sbjct: 495 LTGLC-NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 553

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C+P ++TY +L++G+ +  + EEA+ L   + S GV P++ TYSS++  L +     +A+
Sbjct: 554 CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 613

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++  ++     RP  V Y+ +L  LCK      A++    M   G  P+   Y  +I   
Sbjct: 614 KMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL 673

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
            +    +E  + L E+   G+    L      +  N  V 
Sbjct: 674 ANEDFLKETRDLLRELCSRGVLNKNLLEEWRPKFSNQTVH 713


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 200/418 (47%), Gaps = 7/418 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFLSICRGYGRVHRPLD 103
           G+RH    +  MI  L    QF     L++ + KE    +T ++F+ + R +  V     
Sbjct: 159 GYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKK 218

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V D+M ++GCEP    +  +L  L +   +K A   +  MR +   P +     L+ 
Sbjct: 219 AVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMR-VRFNPNLRHFTSLLY 277

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+    M+A   +  ++   G  PD   Y  L+ G  + GK+ +A +L  EM+   C 
Sbjct: 278 GWCREGKIMEAK-HVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCG 336

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P   ++T LI   C+++ ++EAMR+F EM+  G E +V TY++L+ G CK G + +A E+
Sbjct: 337 PNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEI 396

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI K H P+ ++Y  ++    K+ +L+E +E+++ M+  G  PD  +Y  +I   C 
Sbjct: 397 LDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCK 456

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
           +G  +EA     EM  GG+ P   T+ L   +H  + QG C  +    F+  +  R    
Sbjct: 457 LGDLKEAVRLWGEMQAGGLNPGLDTYIL--MVHGFLSQG-CLVEACDYFKEMVE-RGLLS 512

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +    T   L     +   +  +  +   +   GC  +   W+  + AL+    +++A
Sbjct: 513 APQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHALFSNGHVKEA 570


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 157/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM + G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYAPSVVT 418



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 168/319 (52%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY    E G    +   N+L+ +  K  G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE-GEIRLAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  +LG + E   L   M+     P V TY+ LINGLC+   +++A
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM   G+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A ++ D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  +
Sbjct: 286 LCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKG
Sbjct: 346 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG  P
Sbjct: 396 DVWTGSKLLKEMQRDGYAP 414



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 152/275 (55%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++   + G+I  A+ +F  +      P+VV++ +L+NG  +  +++E  RL   
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A EL   M+     PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A +  DEM + G+ P+++T++ 
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYT- 315

Query: 372 HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK      AF+    M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  P+ GT++ ++     +  +   ++LL
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E      + D Y +  LI      G + +A E ++  +        
Sbjct: 43  KGKGSASAVFAAILETKGTQIS-DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPF 101

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + K  +     +EE    G   +++ ++ LM    K G    A  +   
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDA 161

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I+  C   K
Sbjct: 162 ITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+S 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           D +TY++LI   CKKGD+ ++  + DE+ + G  PD+ T++ ++
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLI 318


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 170/330 (51%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRJAQSVFDAITKW 171

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  RLG + E   L   M      P V TY+ LING C+    ++A
Sbjct: 172 GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDA 231

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN   +++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 232 NELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 291

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M  +GLKPD   Y  +I   C  G    A      M+      +
Sbjct: 292 LCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLD 351

Query: 366 RLTWSLHIRIHNTVVQGLC----KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC      D  +  +  LS+    +  D+ TY+ +I  FCKKG
Sbjct: 352 XVXYT-------ALISGLCXEGRSVDAEKMLREMLSV---GLKPDARTYTMIINEFCKKG 401

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+ K ++++ E+  DG +P   T++ +M  
Sbjct: 402 DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 155/268 (57%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK S   D A ++F EM  +G  P+   + TLI+G C+ G++  A E++K+M +++ S
Sbjct: 221 GXCKES-KXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEH 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC EG+  +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 340 XKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G   + +  L EM   G  P+ +T+++
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVPSVVTYNV 427



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R+    +  R+   M 
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++    +E++   A   +  M   G+ P       LI   CKN G +
Sbjct: 205 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKN-GRV 263

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++  +PD  TY TLI GLC+ G + +A  L  EM  K   P  +TYT+L
Sbjct: 264 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTL 323

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   ++ A    + M  +    +   Y++L+ GLC  G S  A ++L+ M+S   
Sbjct: 324 IDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGL 383

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK+G + +  ++L  M+  G  P    Y  +++
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 11/285 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK-EMETKACSPT 225
           K  G+  A F    E        D Y +  LI      G + +A E ++   E K   P 
Sbjct: 49  KGKGSASAVFAAIXETXGTQ-RSDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVP- 106

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             T   ++  L + K  +     +EE+   G   +++ ++ LM   CK G    A  +  
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFD 166

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +     RP++V+Y+TL+NG  + G L E   +   M   G++PD   Y  +I+  C   
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKES 226

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
           K  +A    DEM++ G+ PN + ++       T++ G CK    + A ++Y  M ++S+S
Sbjct: 227 KXDDANELFDEMLVKGLVPNXVXFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++LI   CKKGD+ ++  ++DE+   G  PD+ T++ ++
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLI 324



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 1/203 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M   G  P    + T++    +  ++ LA   Y+ M    + P + + N LI
Sbjct: 230 DANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 289

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +  A  +  EM  +G  PD  TY TLI+G C+ G +  A E  K M  +  
Sbjct: 290 YGLCKK-GDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENX 348

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V YT+LI+GLC      +A ++  EM S G++P+  TY+ +++  CK G   +  +
Sbjct: 349 RLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 283 LLQMMISKRHRPNIVTYSTLLNG 305
           LL+ M    H P++VTY+ L+NG
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 122/238 (51%), Gaps = 8/238 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L++  C+   +  A  +F+ +   G+ P+V +Y++LM+G  + G   +   L   M+
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +   +P++ TYS L+NG CKE K  +A E+ D M ++GL P+   +  +I   C  G+  
Sbjct: 205 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVD 264

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A     +M+   ++P+ +T+       NT++ GLCK  D  +A  +   M  + +  D 
Sbjct: 265 LAMEIYKQMLSQSLSPDLITY-------NTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDK 317

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY++LI   CK+GD+  +      ++ +    D   ++A+++ L    +   A ++L
Sbjct: 318 ITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKML 375


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 224/468 (47%), Gaps = 17/468 (3%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRH----DNSTFSLMISKLVSANQ 65
           S   T   +L  + A +D++KA+  F+S T E    F      D+ T++ ++  L  A  
Sbjct: 62  SNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGN 121

Query: 66  FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT 125
           +    +  +++   KC+ T   +  +  G  + H+   A  VF++M   G +P   +Y +
Sbjct: 122 YDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSS 181

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           ++  L +  ++  A +    M   G  P   +   ++  LCK  G +  A K  +EM  R
Sbjct: 182 LIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCK-CGRIQEAVKTIQEMRRR 240

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
              P   TY  ++ G   +GK+ EA  + +EM  + C+P  ++YT  I  L      EEA
Sbjct: 241 RLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEA 300

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
            ++FE M  KG +P++ TY  ++D  CK G  + A  +L++M     +PN   Y+ +++G
Sbjct: 301 EKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDG 360

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG--IT 363
             K  +L+EA+E+  R+   G+ P    Y  +I+  C + K  EA   L EM      + 
Sbjct: 361 FVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELE 420

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
           P+ +T+S+       ++ GL K     RAF +   M +  +  D  TY+SLI      G 
Sbjct: 421 PSIVTYSM-------IIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGK 473

Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           + ++  +++E++  G  PD+ T+  ++  L   R    AA  LL E+M
Sbjct: 474 VSRAMELLEEMLKAGIFPDDHTYGTLVQILC--RSDVDAAWDLLQEMM 519



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 190/385 (49%), Gaps = 37/385 (9%)

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
           EP   S+  +L      +  ++     R M+  GI    A+  V++ ALC     +D A 
Sbjct: 26  EPNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSALCARR-DLDKAV 84

Query: 177 KIFREMPNRGC-------TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             F       C        PDS TY  +++GL + G      E +++M    C PT++TY
Sbjct: 85  SYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTY 144

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           T L++GLC++  VE A  +FEEM  KG +P++  YSSL+DGL K G   +A +L+ +MI+
Sbjct: 145 TVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIA 204

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           +   P  V Y++++ GLCK G++QEAV+ +  M+ + L+P    Y  I++ +  +GK +E
Sbjct: 205 RGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEE 264

Query: 350 AANFLDEMVLGGITPNRLTWSLHI-------------RIHNTVVQGLCKTDPNR------ 390
           A   ++EM      P+ +++++ I             ++  T+V+  CK D +       
Sbjct: 265 AFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIID 324

Query: 391 ----------AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
                     A  V   M   ++  +   Y+ ++  F K   + ++  +   ++ DG LP
Sbjct: 325 NFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILP 384

Query: 441 DEGTWSAVMTALWDRRKMRQAAELL 465
              T++ V+ AL   +KM +A ELL
Sbjct: 385 STVTYNTVINALCKLKKMDEALELL 409



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 182/371 (49%), Gaps = 10/371 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D   +S +I  L  A +   A  L+D +       T   + SI  G  +  R  +A
Sbjct: 171 GHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEA 230

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           ++   +M+     P   +Y  ++   +   +++ AF     M +    P   S  + I+A
Sbjct: 231 VKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEA 290

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L  + G  + A K+F  M  +GC PD +TYG +I+  C+ G +  A  + + M+  A  P
Sbjct: 291 L-YSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKP 349

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
               YT +++G  +S  +EEA+ L++ +   G+ P+  TY+++++ LCK     +A+ELL
Sbjct: 350 NRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELL 409

Query: 285 QMMISKRHR--PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + M  ++    P+IVTYS +++GL K G  + A ++L  M   G+ PD   Y  +I    
Sbjct: 410 REMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLA 469

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
             GK   A   L+EM+  GI P+  T+        T+VQ LC++D + A+ +   M    
Sbjct: 470 GAGKVSRAMELLEEMLKAGIFPDDHTY-------GTLVQILCRSDVDAAWDLLQEMMRNG 522

Query: 403 ISVDSLTYSSL 413
            + +  T+ ++
Sbjct: 523 HTPNEFTFKAV 533



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 139/320 (43%), Gaps = 54/320 (16%)

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           +L+  L R G++ +A   F   ++    P V ++  L+ G       E    L  EM+++
Sbjct: 2   SLLLALVRGGQLSDALGFF---QSSISEPNVSSFNILLRGFAARDDFEVVNALLREMKAR 58

Query: 256 GV------------------------------------------EPNVFTYSSLMDGLCK 273
           G+                                           P+  TY++++DGL K
Sbjct: 59  GITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFK 118

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G     +E  + M++ +  P ++TY+ L++GLCK  K++ A ++ + M  +G KPD   
Sbjct: 119 AGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIA 178

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAF 392
           Y  +I      G+  EA   +D M+  G  P  + ++       ++V GLCK      A 
Sbjct: 179 YSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYT-------SIVAGLCKCGRIQEAV 231

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +    MR R +     TYS ++T +   G + ++  +++E+    C PD  +++  + AL
Sbjct: 232 KTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEAL 291

Query: 453 WDRRKMRQAAELLLLELMNK 472
           +   + R+ AE +   ++ K
Sbjct: 292 YSIGR-REEAEKVFETMVEK 310


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 180/326 (55%), Gaps = 12/326 (3%)

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +  M  +G  P + + N LI  LCK  G + +A ++  EM  +GC P+  TY  LI+  C
Sbjct: 2   HESMLSVGCGPDIFTYNTLILGLCK-KGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           + G++ EA+ +  EM  K  +   V Y  LI+ LC+ + V++A+ +F +M SKG +P++F
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T++SL+ GLCK     +A+ L Q M+ +    N +TY+TL++   + G +QEA+++++ M
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 180

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G   D   Y  +I   C  G  ++     ++M+  G+ PN ++        N ++ G
Sbjct: 181 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISC-------NILING 233

Query: 383 LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LC+T +   A +    M +R ++ D +TY+SLI   CK G   ++  + D+L ++G  PD
Sbjct: 234 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 293

Query: 442 EGTWSAVMTALWD-RRKMRQAAELLL 466
             T++ +++  W  +  M   A LLL
Sbjct: 294 AITYNTLIS--WHCKEGMFDDAHLLL 317



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 179/334 (53%), Gaps = 3/334 (0%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T++ +I  L        A +L++ +  + C+     +  +   + +  R  +A  V 
Sbjct: 13  DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 72

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           D+M   G       Y  +++ L ++ +++ A   +  M   G +P + + N LI  LCK 
Sbjct: 73  DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK- 131

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
               + A  ++++M   G   ++ TY TLI+   R G + EA +L  +M  + C    +T
Sbjct: 132 VNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 191

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  LI  LC++ ++E+ + LFE+M SKG+ PN  + + L++GLC+ G    A+E L+ MI
Sbjct: 192 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMI 251

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   P+IVTY++L+NGLCK G+ QEA+ + D+++++G+ PDA  Y  +IS  C  G + 
Sbjct: 252 HRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFD 311

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           +A   L   V  G  PN +TW  +I + N + +G
Sbjct: 312 DAHLLLSRGVDSGFIPNEVTW--YILVSNFIKEG 343



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 183/343 (53%), Gaps = 9/343 (2%)

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M   GC P   +Y T++  L ++  L  A      M+  G +P V +  +LI   CK 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCK- 61

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G ++ A  +  EM  +G   ++  Y  LI+ LC+  K+ +A  +F +M +K C P + T
Sbjct: 62  EGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFT 121

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           + SLI GLC+    EEA+ L+++M  +GV  N  TY++L+    + G   +A++L+  M+
Sbjct: 122 FNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDML 181

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +    + +TY+ L+  LC+ G +++ + + + M  +GL P+      +I+  C  G  Q
Sbjct: 182 FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQ 241

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDS 407
            A  FL +M+  G+TP+ +T+       N+++ GLCKT     A  ++  ++   I  D+
Sbjct: 242 HALEFLRDMIHRGLTPDIVTY-------NSLINGLCKTGRAQEALNLFDKLQVEGICPDA 294

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           +TY++LI+  CK+G    +  ++   V  G +P+E TW  +++
Sbjct: 295 ITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVS 337



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 8/254 (3%)

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           + + M +  C P + TY +LI GLC+   +  A  L  EM+ KG EPNV TY+ L+D  C
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G   +A  +L  M  K    N V Y+ L++ LCK+ K+Q+A+ +   M  +G KPD  
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            +  +I   C + K++EA     +M+L G+  N +T+       NT++    +      A
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITY-------NTLIHAFLRRGAMQEA 173

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            ++   M  R   +D +TY+ LI   C+ G+I K   + ++++  G  P+  + + ++  
Sbjct: 174 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 233

Query: 452 LWDRRKMRQAAELL 465
           L     ++ A E L
Sbjct: 234 LCRTGNIQHALEFL 247



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 5/213 (2%)

Query: 35  FDSATAEYAN----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           F+ A   Y +    G   +  T++ +I   +     + A  L++ +    C + +  +  
Sbjct: 135 FEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 194

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + +   R       + +F+ M   G  P   S   ++  L     ++ A  F R M   G
Sbjct: 195 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 254

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           + P + + N LI  LCK +G    A  +F ++   G  PD+ TY TLI+  C+ G   +A
Sbjct: 255 LTPDIVTYNSLINGLCK-TGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 313

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
             L          P  VT+  L++   +    E
Sbjct: 314 HLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 173/330 (52%), Gaps = 15/330 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK+ G +  A  +F  +   
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKW 152

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   +Y TL+NG  R G + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 153 GLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDA 212

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 213 NELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 272

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A  ++D M ++GLKPD   Y  +I+  C  G    A      M+   I  +
Sbjct: 273 LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLD 332

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ G C+     D  +  +  LS+    +  D+ TY+ +I  FCK G
Sbjct: 333 EVAYT-------ALISGXCQEGRSVDAEKMLREMLSV---GLKPDARTYTMIINEFCKXG 382

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D+   ++++ E+  DG +P   T++ +M  
Sbjct: 383 DVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 156/268 (58%), Gaps = 1/268 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  SY T++   +    L   F     M   G+QP V + +VLI 
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLIN 201

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 202 GLCKES-KMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 260

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L++G CK G    A E 
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEH 320

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++G C+EG+  +A ++L  M   GLKPDA  Y  II+ FC 
Sbjct: 321 RKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 380

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSL 371
            G     +  L EM   G  P+ +T+++
Sbjct: 381 XGDVWXGSKLLKEMQRDGHVPSVVTYNV 408



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 1/287 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +       R A+ + D + K     +   + ++  GY R     +   +   M 
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXML 185

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M   G+ P   +   LI   CKN G +
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN-GRV 244

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++  +PD  TY TLI GLC+ G + +A  L  EM  K   P  +TYT+L
Sbjct: 245 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 304

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           ING C+   ++ A    + M  + +  +   Y++L+ G C+ G S  A ++L+ M+S   
Sbjct: 305 INGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGL 364

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           +P+  TY+ ++N  CK G +    ++L  M+  G  P    Y  +++
Sbjct: 365 KPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMN 411



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 9/286 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E        D Y +  LI      G + +A E ++           
Sbjct: 30  KGKGSASAVFAAILETKGTQ-RSDIYVFSGLIAAYLESGFLRDAIECYRLTREHKFWVPF 88

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + K  +     +EE+   G   +++ ++ LM   CK G    A  +   
Sbjct: 89  DTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDA 148

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+Y+TL+NG  + G L E   +   M   G++PD   Y  +I+  C   K
Sbjct: 149 ITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESK 208

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM++ G+ PN +T++       T++ G CK    + A ++Y  M ++S+S 
Sbjct: 209 MDDANELFDEMLVKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLSP 261

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           D +TY++LI   CKKGD+ ++  ++DE+ + G  PD+ T++ ++  
Sbjct: 262 DLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLING 307



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 1/203 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD+M   G  P   ++ T++    +  ++ LA   Y+ M    + P + + N LI
Sbjct: 211 DANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 270

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +  A  +  EM  +G  PD  TY TLING C+ G +  A E  K M  +  
Sbjct: 271 YGLCKK-GDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENI 329

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V YT+LI+G CQ     +A ++  EM S G++P+  TY+ +++  CK G      +
Sbjct: 330 RLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSK 389

Query: 283 LLQMMISKRHRPNIVTYSTLLNG 305
           LL+ M    H P++VTY+ L+NG
Sbjct: 390 LLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L++  C+   +  A  +F+ +   G+ P+V +Y++LM+G  + G   +   L   M+
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXML 185

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +   +P++ TYS L+NGLCKE K+ +A E+ D M ++GL P+   +  +I   C  G+  
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A     +M+   ++P+ +T+       NT++ GLCK  D  +A  +   M  + +  D 
Sbjct: 246 LAMEIYKQMLSQSLSPDLITY-------NTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDK 298

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY++LI   CK+GD+  +      ++ +    DE  ++A+++      +   A ++L
Sbjct: 299 ITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKML 356


>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Glycine max]
          Length = 587

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 219/440 (49%), Gaps = 29/440 (6%)

Query: 56  MISKLVSANQFRPAEDLLDRV-----------------NKEKCDITEDIFLSICRGYGRV 98
           MI  L     F+ A+ +L+++                   +  ++   +   +   Y + 
Sbjct: 80  MIHILTEHKHFKTAQHVLEKIAHKDFLSSPSVLSTLVRTHDNQEVNSQVLSWLVIHYAKS 139

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
               DA++VF++M+    +P   +   +L  L+++    + ++ Y+ M ++G+ P +   
Sbjct: 140 KMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNIYIY 199

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N L  A C  SG ++ A ++  EM  +G   D +TY TL++  C+ G  YEA  +   ME
Sbjct: 200 NCLFHA-CSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQNRME 258

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            +  +  +V+Y SLI G C+   + EAMR+F E+  K   PN  TY++L+DG CK     
Sbjct: 259 REGINLDIVSYNSLIYGFCKEGRMREAMRMFSEI--KNATPNHVTYTTLIDGYCKTNELE 316

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A+++ ++M +K   P +VTY+++L  LC++G++++A ++L+ M  + L+ D      +I
Sbjct: 317 EALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNEMSERKLQADNITCNTLI 376

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           + +C IG  + A  F ++M+  G+ P+  T+         ++ G CKT+    A ++  S
Sbjct: 377 NAYCKIGDLKSALKFKNKMLEAGLKPDPFTYK-------ALIHGFCKTNELESAKELMFS 429

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M +   +    TYS ++  + KK ++     + DE +  G   D   + A++ +     +
Sbjct: 430 MLDAGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGICLDVSVYRALIRSSCKVER 489

Query: 458 MRQAAELLLLELMNKCVEAE 477
           + Q AE L   +  K +  E
Sbjct: 490 I-QCAERLFYHMEGKGISGE 508



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 149/313 (47%), Gaps = 3/313 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ ++S          A  + +R+ +E  ++    + S+  G+ +  R  +A
Sbjct: 226 GVLQDIFTYNTLLSLYCKKGMHYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREA 285

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           MR+F ++K     P   +Y T++    + N+L+ A +  + M   G+ P V + N +++ 
Sbjct: 286 MRMFSEIK--NATPNHVTYTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRK 343

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC++    DA  K+  EM  R    D+ T  TLIN  C++G +  A +   +M      P
Sbjct: 344 LCQDGRIRDAN-KLLNEMSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKP 402

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY +LI+G C++  +E A  L   M   G  P+  TYS ++DG  K       + L 
Sbjct: 403 DPFTYKALIHGFCKTNELESAKELMFSMLDAGFTPSYCTYSWIVDGYNKKDNMDAVLALP 462

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
              +S+    ++  Y  L+   CK  ++Q A  +   M+ +G+  ++ +Y  I   + ++
Sbjct: 463 DEFLSRGICLDVSVYRALIRSSCKVERIQCAERLFYHMEGKGISGESVIYTSIAYAYWNV 522

Query: 345 GKYQEAANFLDEM 357
           G    A++ L+EM
Sbjct: 523 GNVSAASSMLEEM 535


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 220/475 (46%), Gaps = 54/475 (11%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFL-SICRGYGRV 98
           A G     + F+ ++     ++ F  A  LL ++ K +C    +  +I + SIC G G +
Sbjct: 371 AEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSG-GEL 429

Query: 99  HRPLD---AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
             P+    A + +++M   G      + ++    L    + + A++    M   G  P  
Sbjct: 430 PGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDT 489

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           ++ + +I  LC N+  ++ AF +F+EM   G  PD YTY  LI+   + G I +A     
Sbjct: 490 STYSEVIGFLC-NASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLD 548

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           EM    C PTVVTYT+LI+   ++K V  A  LFE M +KG  PNV TY++L+DG CK G
Sbjct: 549 EMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSG 608

Query: 276 CSSQAMELLQMMISKR----------------HRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
              +A ++   M                     +PN+VTY  L++GLCK  K+++A ++L
Sbjct: 609 NIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLL 668

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL-------- 371
           + M + G +P+  +Y  +I  FC   K  EA     +MV  G  PN  T+S         
Sbjct: 669 ETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKD 728

Query: 372 --------------------HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
                               +I I+  ++ GL K    + A+++ L M  +    + +TY
Sbjct: 729 KRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTY 788

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +++I  F K G + K   +  E+   GC P+  T++ ++        + +A  LL
Sbjct: 789 TAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALL 843



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/503 (24%), Positives = 222/503 (44%), Gaps = 63/503 (12%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++V+  +     V  A  +F         G   D  T++++I     A   + A + L
Sbjct: 491 TYSEVIGFLCNASRVENAFFLFKEMKG---TGVVPDVYTYTILIDCFSKAGIIKQAHNWL 547

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           D + ++ C+ T   + ++   Y +  +   A  +F+ M   GC P   +Y  ++    + 
Sbjct: 548 DEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKS 607

Query: 134 NQLKLAFRFYRHMR----------------EIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
             ++ A + Y  MR                 +  +P V +   L+  LCK     DA   
Sbjct: 608 GNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDAR-D 666

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +   M   GC P++  Y  LI+G C+  K+ EA+E+F +M  +  +P V TY+SLI+ L 
Sbjct: 667 LLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLF 726

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + K ++  +++  +M      PN+  Y+ ++DGL K   + +A +L+ MM  K  +PN+V
Sbjct: 727 KDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVV 786

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+ +++G  K GK+ + +E+   M  +G  P+   Y  +I+  C  G   EA   L+EM
Sbjct: 787 TYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM 846

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQG-----------LCKTDPNRA--------------- 391
                   +  W  H+  +  V++G           L + + N +               
Sbjct: 847 -------KQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFV 899

Query: 392 ----FQVYLSMRNRSISVD-SLT-----YSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
                +V L +    IS   S+T     Y+SLI  F     I  +  +  +++ DG +PD
Sbjct: 900 KAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPD 959

Query: 442 EGTWSAVMTALWDRRKMRQAAEL 464
            GT+  ++  L   R+  +A +L
Sbjct: 960 LGTFVHLLMGLIRVRRWEEALQL 982



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 208/475 (43%), Gaps = 70/475 (14%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDI---TEDIFLSICRGYGRVHRPLDAMRVFD 109
           ++ MIS L  A+ F  A D L+R+    C     T  I L  C    ++ R     R+  
Sbjct: 311 YNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGR---CKRILS 367

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
            M   GC P+   + +++    + +    A++  + M +   +P     N+LI ++C   
Sbjct: 368 MMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGG 427

Query: 170 ----------------------------------------GTMDAAFKIFREMPNRGCTP 189
                                                   G  + A+K+  EM   G  P
Sbjct: 428 ELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVP 487

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+ TY  +I  LC   ++  A  LFKEM+     P V TYT LI+   ++  +++A    
Sbjct: 488 DTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWL 547

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM   G EP V TY++L+    K    S A EL ++MI+K   PN++TY+ L++G CK 
Sbjct: 548 DEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKS 607

Query: 310 GKLQEAVEILDRMKLQGLKPDAGL----------------YGKIISCFCDIGKYQEAANF 353
           G +++A +I  RM+     PD  +                YG ++   C   K ++A + 
Sbjct: 608 GNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDL 667

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
           L+ M + G  PN +       +++ ++ G CK    + A +V+  M  R  + +  TYSS
Sbjct: 668 LETMFVDGCEPNTI-------VYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSS 720

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           LI    K   +    +++ +++ + C P+   ++ ++  L    K  +A +L+L+
Sbjct: 721 LIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLM 775



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 197/436 (45%), Gaps = 18/436 (4%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+ H  + +  ++      +  R  E+ L  +  +  ++   +   + R   R      A
Sbjct: 166 GYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVA 225

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +    ++K+FG +PT  +Y  ++ + +  ++L  A   +R M E+G+     +L    +A
Sbjct: 226 LEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQA 285

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK     +A   I +E       P++  Y  +I+GLC      EA +    M + +C P
Sbjct: 286 LCKVGKWREALSLIEKE----DFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIP 341

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY  L+ G    K +    R+   M ++G  P+   ++SL+   CK    S A +LL
Sbjct: 342 NVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLL 401

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV--EILDRMKLQGLKPDAGLYG-KIIS-- 339
           + M     +P  V Y+ L+  +C  G+L   V  E+ ++   + L     L    ++S  
Sbjct: 402 KKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFA 461

Query: 340 -CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
            C C  GK+++A   + EM+  G  P+  T+S        V+  LC       AF ++  
Sbjct: 462 RCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYS-------EVIGFLCNASRVENAFFLFKE 514

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M+   +  D  TY+ LI CF K G I ++   +DE+V DGC P   T++ ++ A    +K
Sbjct: 515 MKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKK 574

Query: 458 MRQAAELLLLELMNKC 473
           +  A EL  L +   C
Sbjct: 575 VSVANELFELMIAKGC 590



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 40/343 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  ++  L  A++ + A DLL+ +  + C+    ++ ++  G+ +  +  +A  VF KM
Sbjct: 647 TYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM 706

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
            E G  P   +Y +++  L ++ +L L  +    M E    P +     +I  L K + T
Sbjct: 707 VERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D A+K+   M  +GC P+  TY  +I+G  + GK+ +  ELF+EM +K C+P  VTYT 
Sbjct: 767 -DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTV 825

Query: 232 LINGLCQSKSVEEAMRLFEEMRS---------------------------------KGVE 258
           LIN  C +  ++EA  L EEM+                                   G  
Sbjct: 826 LINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSA 885

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR----HRPNIVTYSTLLNGLCKEGKLQE 314
           P +  Y  L+D   K G    A+EL + +IS       + N+  Y++L+       K+  
Sbjct: 886 PTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNL--YTSLIYSFSYASKIDH 943

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           A E+   M   G+ PD G +  ++     + +++EA    D +
Sbjct: 944 AFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSL 986


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/472 (27%), Positives = 218/472 (46%), Gaps = 45/472 (9%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           YA G   D  T+SL++  L    +   A  +   + ++       I+  +  GY      
Sbjct: 366 YARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAI 425

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            D   + D M   G  P    +  VL    ++  +  A   +  M + G+ P V +  +L
Sbjct: 426 ADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGIL 485

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I ALCK     DA  K F +M N G TP+S  + +L+ GLC + +  +A+ELF EM  + 
Sbjct: 486 IDALCKLGRVDDAVLK-FNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQG 544

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VV + +++  LC    V  A RL + M   GV PNV +Y++L+ G C  G + +A 
Sbjct: 545 VRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAA 604

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +LL +M+S   +P++++Y TLL G CK G++  A  +   M  +G+ P A  Y  I+   
Sbjct: 605 QLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGL 664

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
               ++ EA      M+  G       W ++   +N ++ GLCKT+  + AF+++ S+ +
Sbjct: 665 FHTRRFSEAKELYLNMIKSG-----QQWDIYT--YNIILNGLCKTNCVDEAFKIFQSLCS 717

Query: 401 RSISVDSLTYSSLITCFCKKG------DIHKS-----------------ARIVDELVLD- 436
           + +  + +T++ +I    K G      D+  S                   I+ E +LD 
Sbjct: 718 KDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDE 777

Query: 437 -----------GCLPDEGTWSAVMTALWDRRK-MRQAAELLLLELMNKCVEA 476
                      GC PD    +A++ +L  R + MR  A L  ++ MN  +EA
Sbjct: 778 FDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEA 829



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 177/326 (54%), Gaps = 12/326 (3%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG---CTPDSYTYGTLING 200
           R M E G  P V S N L+K LC N   ++ A ++   M   G   CTP+  TY T+I+G
Sbjct: 150 RRMPEFGCMPNVVSCNTLLKGLC-NEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDG 208

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC+   +  A+ + + M  K     VVTY+++I+GLC++++V+ A  + + M  KGV+P+
Sbjct: 209 LCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPD 268

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           V TY++++DGLCK     +A  +LQ MI K  +P++VTY+T+++GLCK   +  A  +L 
Sbjct: 269 VVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQ 328

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M  + +KPD   Y  +I  +   G+++E    L+EM   G+ P+ +T+SL       ++
Sbjct: 329 HMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSL-------LL 381

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
             LCK      A +++  M  + I  +   Y  L+  +  +G I     ++D +V +G  
Sbjct: 382 DYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGIS 441

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           P+   ++ V+ A   +  + +A  + 
Sbjct: 442 PNNYIFNIVLCAYAKKAMIDEAMHIF 467



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 213/442 (48%), Gaps = 9/442 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           EK V +AL +  +   +       +  T++ +I  L  A     AE +L  +  +   + 
Sbjct: 174 EKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLD 233

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + +I  G  +      A  V   M + G +P   +Y T++  L +   +  A    +
Sbjct: 234 VVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQ 293

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
           HM + G++P V + N +I  LCK +  +D A  + + M ++   PD  TY  LI+G    
Sbjct: 294 HMIDKGVKPDVVTYNTIIDGLCK-AQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLST 352

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G+  E     +EM  +   P VVTY+ L++ LC++    EA ++F  M  KG++PNV  Y
Sbjct: 353 GEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIY 412

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
             L+ G    G  +   +LL +M++    PN   ++ +L    K+  + EA+ I  RM  
Sbjct: 413 GILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQ 472

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            GL PD   YG +I   C +G+  +A    ++M+  G+TPN + +       N++V GLC
Sbjct: 473 HGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVF-------NSLVYGLC 525

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
             D   +A +++  M ++ +  + + +++++   C +G +  + R++D +   G  P+  
Sbjct: 526 TVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVI 585

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           +++ ++       +  +AA+LL
Sbjct: 586 SYNTLIGGHCLAGRTDEAAQLL 607



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 206/458 (44%), Gaps = 46/458 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPL 102
           G + D  T++ +I  L  A     A+ +L  +  +  D+  DI    C   GY       
Sbjct: 299 GVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDK--DVKPDIQTYNCLIHGYLSTGEWK 356

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           + +R  ++M   G +P   +Y  +L  L +  +   A + +  M   GI+P V    +L+
Sbjct: 357 EVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILL 416

Query: 163 KA--------------------------------LCKNS--GTMDAAFKIFREMPNRGCT 188
                                             LC  +    +D A  IF  M   G +
Sbjct: 417 HGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLS 476

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD  TYG LI+ LC+LG++ +A   F +M     +P  V + SL+ GLC     E+A  L
Sbjct: 477 PDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEEL 536

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EM  +GV PNV  ++++M  LC  G    A  L+  M     RPN+++Y+TL+ G C 
Sbjct: 537 FFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCL 596

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G+  EA ++LD M   GLKPD   Y  ++  +C  G+   A     EM+  G+TP  +T
Sbjct: 597 AGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVT 656

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +S       T++QGL  T   + A ++YL+M       D  TY+ ++   CK   + ++ 
Sbjct: 657 YS-------TILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAF 709

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I   L      P+  T++ ++  L+   + + A +L 
Sbjct: 710 KIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLF 747



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 196/408 (48%), Gaps = 22/408 (5%)

Query: 67  RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
           R    LL+ V + +C  T ++ +S+   + R+ R        +K++     P   +Y  +
Sbjct: 50  RAFNHLLNVVARARCSSTSELAVSL---FNRMARACS-----NKVR-----PDLCTYSIL 96

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
                   +++  F  +  + + G +     +N L+  LC      +A   + R MP  G
Sbjct: 97  TGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFG 156

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA---CSPTVVTYTSLINGLCQSKSVE 243
           C P+  +  TL+ GLC   ++ EA EL   M       C+P VVTY ++I+GLC++++V+
Sbjct: 157 CMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVD 216

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
            A  + + M  KGV+ +V TYS+++DGLCK     +A  +LQ MI K  +P++VTY+T++
Sbjct: 217 RAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTII 276

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +GLCK   +  A  +L  M  +G+KPD   Y  II   C       A   L  M+   + 
Sbjct: 277 DGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVK 336

Query: 364 PNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           P+  T+  +  IH  +  G  K    R  ++Y     R +  D +TYS L+   CK G  
Sbjct: 337 PDIQTY--NCLIHGYLSTGEWKEVVRRLEEMY----ARGLDPDVVTYSLLLDYLCKNGKC 390

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            ++ +I   ++  G  P+   +  ++     R  +    +LL L + N
Sbjct: 391 TEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVAN 438



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 195/425 (45%), Gaps = 13/425 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ +I  L  A     AE +L  +  +        + +I  G  +      A
Sbjct: 264 GVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRA 323

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             V   M +   +P  ++Y  ++   +   + K   R    M   G+ P V + ++L+  
Sbjct: 324 DGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDY 383

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN G    A KIF  M  +G  P+   YG L++G    G I +  +L   M     SP
Sbjct: 384 LCKN-GKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISP 442

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
               +  ++    +   ++EAM +F  M   G+ P+V TY  L+D LCK G    A+   
Sbjct: 443 NNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKF 502

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             MI+    PN V +++L+ GLC   + ++A E+   M  QG++P+   +  I+   C+ 
Sbjct: 503 NQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNE 562

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC---KTDPNRAFQVYLSMRNR 401
           G+   A   +D M   G+ PN +++       NT++ G C   +TD   A Q+   M + 
Sbjct: 563 GQVMVAQRLIDSMERVGVRPNVISY-------NTLIGGHCLAGRTD--EAAQLLDVMVSV 613

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  D ++Y +L+  +CK G I  +  +  E++  G  P   T+S ++  L+  R+  +A
Sbjct: 614 GLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEA 673

Query: 462 AELLL 466
            EL L
Sbjct: 674 KELYL 678



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 192/393 (48%), Gaps = 10/393 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++A+ IF   +    +G   D  T+ ++I  L    +   A    +++  +       +
Sbjct: 460 IDEAMHIFSRMSQ---HGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVV 516

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F S+  G   V R   A  +F +M + G  P    + T++  L  E Q+ +A R    M 
Sbjct: 517 FNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSME 576

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +G++P V S N LI   C  +G  D A ++   M + G  PD  +Y TL+ G C+ G+I
Sbjct: 577 RVGVRPNVISYNTLIGGHCL-AGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRI 635

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A  LF+EM  K  +P  VTY++++ GL  ++   EA  L+  M   G + +++TY+ +
Sbjct: 636 DNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNII 695

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           ++GLCK  C  +A ++ Q + SK  RPNI+T++ +++ L K G+ ++A+++   +   GL
Sbjct: 696 LNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGL 755

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            P+   Y  ++      G   E  N    M   G TP+ +  +  IR        L + +
Sbjct: 756 VPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIR------SLLGRGE 809

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
             RA      +   + S+++ T S LI+ F ++
Sbjct: 810 IMRAGAYLSKIDEMNFSLEASTTSLLISLFSRE 842



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 171/377 (45%), Gaps = 54/377 (14%)

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT---- 188
           ++ LKL      H R   ++     LNV+ +A C  S T + A  +F  M  R C+    
Sbjct: 31  DDALKLFDELLPHARPASVRAFNHLLNVVARARC--SSTSELAVSLFNRMA-RACSNKVR 87

Query: 189 PDSYTYGTLINGLCRLGKIY-----------------------------EAKE------- 212
           PD  TY  L    CRLG+I                              +AK        
Sbjct: 88  PDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDI 147

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFTYSSLMD 269
           L + M    C P VV+  +L+ GLC  K VEEA+ L   M   G     PNV TY++++D
Sbjct: 148 LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIID 207

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLCK     +A  +LQ MI K  + ++VTYST+++GLCK   +  A  +L  M  +G+KP
Sbjct: 208 GLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKP 267

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
           D   Y  II   C       A   L  M+  G+ P+ +T+       NT++ GLCK    
Sbjct: 268 DVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTY-------NTIIDGLCKAQAV 320

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           +RA  V   M ++ +  D  TY+ LI  +   G+  +  R ++E+   G  PD  T+S +
Sbjct: 321 DRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLL 380

Query: 449 MTALWDRRKMRQAAELL 465
           +  L    K  +A ++ 
Sbjct: 381 LDYLCKNGKCTEARKIF 397



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 54/290 (18%)

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ---AMELLQMMI---SKRH 292
           S  +++A++LF+E+       +V  ++ L++ + +  CSS    A+ L   M    S + 
Sbjct: 27  SLGIDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKV 86

Query: 293 RPNIVTYST-----------------------------------LLNGLCKEGKLQEAVE 317
           RP++ TYS                                    LLNGLC   ++ EA++
Sbjct: 87  RPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMD 146

Query: 318 I-LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL---GGITPNRLTWSLHI 373
           I L RM   G  P+      ++   C+  + +EA   L  M     G  TPN +T+    
Sbjct: 147 ILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTY---- 202

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              NT++ GLCK    +RA  V   M ++ + +D +TYS++I   CK   + ++  ++  
Sbjct: 203 ---NTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQH 259

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           ++  G  PD  T++ ++  L   + + + AE +L  +++K V+ +V   N
Sbjct: 260 MIDKGVKPDVVTYNTIIDGLCKAQAVDR-AEGVLQHMIDKGVKPDVVTYN 308



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 11/209 (5%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVFD 109
           T+S ++  L    +F  A++L   +N  K     DI+    I  G  + +   +A ++F 
Sbjct: 656 TYSTILQGLFHTRRFSEAKELY--LNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQ 713

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
            +      P   ++  ++ +L +  + K A   +  +   G+ P V +  +++K + +  
Sbjct: 714 SLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQ-E 772

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G +D    +F  M   GCTPDS     +I  L   G+I  A     +++    S    T 
Sbjct: 773 GLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTT 832

Query: 230 TSLINGLC------QSKSVEEAMRLFEEM 252
           + LI+          +KS+ E     EE+
Sbjct: 833 SLLISLFSREEYKNHAKSLPEKYLFLEEV 861


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 174/329 (52%), Gaps = 9/329 (2%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           + F+ M   G  P+  +Y  ++  L +E  L+ + R +  MRE+G+ P V + N LI   
Sbjct: 216 KFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGY 275

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            K  G+++    +F EM + GC PD  TY  LIN  C+  K+  A E F EM+     P 
Sbjct: 276 GK-VGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPN 334

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VVTY++LI+  C+   ++ A++L  +MR  G+ PN FTY+SL+D  CK G  ++A +LL 
Sbjct: 335 VVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLN 394

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+    + NIVTY+ LL+GLCK G++ EA E+   M   G+ P+  +Y  ++  +    
Sbjct: 395 DMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAE 454

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSIS 404
           + ++A   L +M    I P+ +       ++ +++ G C        ++ L  M++R IS
Sbjct: 455 RMEDAMKILKQMTECNIKPDLI-------LYGSIIWGHCSQRKLEETKLILEEMKSRGIS 507

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDEL 433
            + +  +++I  + K G    +     E+
Sbjct: 508 ANPVISTTIIDAYFKAGKSSDALNFFQEM 536



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 206/417 (49%), Gaps = 13/417 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFD 109
           T+++MI  L        +  L   V   +  ++ D+  + S+  GYG+V    +   +F+
Sbjct: 232 TYNVMIDYLCKEGDLENSRRLF--VQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFN 289

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           +MK+ GC P   +Y  ++    +  ++  AF ++  M+  G++P V + + LI A CK  
Sbjct: 290 EMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK-E 348

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
           G M  A K+  +M   G  P+ +TY +LI+  C+ G + EA +L  +M        +VTY
Sbjct: 349 GMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTY 408

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           T+L++GLC++  + EA  +F  M   G+ PN   Y++L+ G  K      AM++L+ M  
Sbjct: 409 TALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTE 468

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
              +P+++ Y +++ G C + KL+E   IL+ MK +G+  +  +   II  +   GK  +
Sbjct: 469 CNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSD 528

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSL 408
           A NF  EM   G+    +T+ +       ++ GLC+      A   +  M +  +  +  
Sbjct: 529 ALNFFQEMQDVGVEATIVTYCV-------LIDGLCEAGIVELAVDYFCRMLSLGLQPNVA 581

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            Y+SLI   C    I  + ++ DE+   G  PD   ++A++        +++A  L+
Sbjct: 582 VYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLI 638



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 219/471 (46%), Gaps = 37/471 (7%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W +KI       L+   +D   AL  F  A ++   GFRH   ++ +++  +  A  +  
Sbjct: 72  WVSKI-------LLGLREDPKLALKFFKWAGSQV--GFRHTTESYCIIVHLVFRARMYTD 122

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG--CEPTPKSYITV 126
           A D +  V         D+   +C              +FD +      C      +  +
Sbjct: 123 AHDTVKEVIMNS---RMDMGFPVCN-------------IFDMLWSTRNICVSGSGVFDVL 166

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
            ++ VE   L+ A   +  MR     P   S N L+  L K SG      K F +M   G
Sbjct: 167 FSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSK-SGNGQLVRKFFNDMIGAG 225

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
             P  +TY  +I+ LC+ G +  ++ LF +M     SP VVTY SLI+G  +  S+EE  
Sbjct: 226 IAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVA 285

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            LF EM+  G  P++ TY+ L++  CK     +A E    M +   +PN+VTYSTL++  
Sbjct: 286 SLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAF 345

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CKEG +Q A+++L  M+  GL P+   Y  +I   C  G   EA   L++M+  G+  N 
Sbjct: 346 CKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNI 405

Query: 367 LTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           +T++        ++ GLCK      A +V+ SM    IS +   Y++L+  + K   +  
Sbjct: 406 VTYT-------ALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMED 458

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476
           + +I+ ++      PD   + +++     +RK+ +  +L+L E+ ++ + A
Sbjct: 459 AMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEE-TKLILEEMKSRGISA 508



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 157/323 (48%), Gaps = 1/323 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T++ +I     A     A  LL+ + +    +    + ++  G  +  R ++A
Sbjct: 365 GLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEA 424

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             VF  M + G  P  + Y  ++   ++  +++ A +  + M E  I+P +     +I  
Sbjct: 425 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 484

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C      +    I  EM +RG + +     T+I+   + GK  +A   F+EM+      
Sbjct: 485 HCSQRKLEETKL-ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEA 543

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T+VTY  LI+GLC++  VE A+  F  M S G++PNV  Y+SL+DGLC   C   A +L 
Sbjct: 544 TIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLF 603

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  +   P+I  ++ L++G  K G LQEA+ ++ RM    ++ D  +Y  ++S F   
Sbjct: 604 DEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQC 663

Query: 345 GKYQEAANFLDEMVLGGITPNRL 367
           G+  +A  F +EM+  GI P  +
Sbjct: 664 GELHQARKFFNEMIEKGILPEEV 686



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 154/313 (49%), Gaps = 1/313 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ ++  L  A +   AE++   + K+     + ++ ++  GY +  R  DA
Sbjct: 400 GVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDA 459

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M++  +M E   +P    Y +++     + +L+        M+  GI         +I A
Sbjct: 460 MKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDA 519

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K +G    A   F+EM + G      TY  LI+GLC  G +  A + F  M +    P
Sbjct: 520 YFK-AGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQP 578

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V  YTSLI+GLC +  +E A +LF+EM+ +G+ P++  +++L+DG  K G   +A+ L+
Sbjct: 579 NVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLI 638

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M       ++  Y++L++G  + G+L +A +  + M  +G+ P+  L   ++  +   
Sbjct: 639 SRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKR 698

Query: 345 GKYQEAANFLDEM 357
           G+  EA    +EM
Sbjct: 699 GQLDEAIELKNEM 711



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 141/282 (50%), Gaps = 5/282 (1%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRP 101
           +G   +   ++ ++   + A +   A  +L ++ +  C+I  D+ L  SI  G+    + 
Sbjct: 434 DGISPNQQVYTALVHGYIKAERMEDAMKILKQMTE--CNIKPDLILYGSIIWGHCSQRKL 491

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +   + ++MK  G    P    T++    +  +   A  F++ M+++G++  + +  VL
Sbjct: 492 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 551

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I  LC+ +G ++ A   F  M + G  P+   Y +LI+GLC    I  AK+LF EM+ + 
Sbjct: 552 IDGLCE-AGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRG 610

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            +P +  +T+LI+G  +  +++EA+ L   M    +E ++  Y+SL+ G  + G   QA 
Sbjct: 611 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 670

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +    MI K   P  V    LL    K G+L EA+E+ + M+
Sbjct: 671 KFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEME 712



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 1/172 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+ ++I  L  A     A D   R+          ++ S+  G    +    A ++FD+M
Sbjct: 547 TYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEM 606

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P   ++  ++   ++   L+ A      M E+ I+  +     L+    +  G 
Sbjct: 607 QCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQ-CGE 665

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +  A K F EM  +G  P+      L+    + G++ EA EL  EME  A S
Sbjct: 666 LHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAYS 717


>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
 gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
          Length = 795

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 204/417 (48%), Gaps = 18/417 (4%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPLDAMRVFDK 110
           F+L+I  L+   Q+  A  L D V         D+F   C      + H+  +A+ ++DK
Sbjct: 367 FNLVIKGLLRNKQWEDAIALFDLVVDTG---VPDVFTYGCLIHWLSKHHKVHEAVNLWDK 423

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           MKE G +P+  +  ++L    E+  +  A + Y  M   G  P   +   L+K   K   
Sbjct: 424 MKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKA 483

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             D A+ +  EM   G +   YTY  LINGLC + ++ E  E+ K   ++   PT +TY 
Sbjct: 484 -FDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYN 542

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           S+ING  ++  +  A+ ++ +M  KG+ PN+ TY+S +DG C+  C   A++LL  M   
Sbjct: 543 SIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCN 602

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P+I  Y+  +N  CK+G +  A+  L  +   GL P+  +Y   ++ + ++    EA
Sbjct: 603 GIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVTVYNSFVTGYKNLKMMAEA 662

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF--QVYLSMRNRSISVDSL 408
           + F   M+   I  +         I+ T++ G  K   N AF  ++Y  M       D  
Sbjct: 663 SKFYYSMIKQRIAAD-------TEIYTTLIDGFSKVG-NVAFALELYSEMLANHNIPDDK 714

Query: 409 TYSSLITCFCKKGDIHKSARIVDELV-LDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           T+++L    C+ GDI  + R++D++  LD C P+  T++ ++ A     K+++A +L
Sbjct: 715 TFTALTHGLCRSGDIDGAKRLLDDMTRLDVC-PNTVTYNMLINAHIRDGKLQEAFQL 770



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 213/440 (48%), Gaps = 13/440 (2%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ KAL +FD A  +   G    N T++++I    +         L  ++ ++    +  
Sbjct: 309 EIGKALDLFDEAVRD---GVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTY 365

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            F  + +G  R  +  DA+ +FD + + G  P   +Y  ++  L + +++  A   +  M
Sbjct: 366 EFNLVIKGLLRNKQWEDAIALFDLVVDTGV-PDVFTYGCLIHWLSKHHKVHEAVNLWDKM 424

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +E G++P + + + L+   C+  G MD A K++ EMP +G  P+  TY TL+ G  +   
Sbjct: 425 KEAGVKPSIVTCHSLLLGYCEK-GCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKA 483

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
             +A  L  EM     S    TY  LINGLC    V E   + +   S+G  P   TY+S
Sbjct: 484 FDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNS 543

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           +++G  K G    A+ + + M  K   PNIVTY++ ++G C+      AV++L  M+  G
Sbjct: 544 IINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNG 603

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           + PD   Y   I+ FC  G    A +FL  ++  G+TPN       + ++N+ V G    
Sbjct: 604 IHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPN-------VTVYNSFVTGYKNL 656

Query: 387 D-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                A + Y SM  + I+ D+  Y++LI  F K G++  +  +  E++ +  +PD+ T+
Sbjct: 657 KMMAEASKFYYSMIKQRIAADTEIYTTLIDGFSKVGNVAFALELYSEMLANHNIPDDKTF 716

Query: 446 SAVMTALWDRRKMRQAAELL 465
           +A+   L     +  A  LL
Sbjct: 717 TALTHGLCRSGDIDGAKRLL 736



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 192/385 (49%), Gaps = 18/385 (4%)

Query: 86  DIFL--SICRGY---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           D+FL  ++ +GY   G + + LD   +FD+    G  PT  +Y  ++     E      +
Sbjct: 293 DVFLATTLMQGYCLHGEIGKALD---LFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETY 349

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           +  R M E G+ P     N++IK L +N    DA   +F  + + G  PD +TYG LI+ 
Sbjct: 350 KLCRQMIEQGLLPSTYEFNLVIKGLLRNKQWEDA-IALFDLVVDTG-VPDVFTYGCLIHW 407

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           L +  K++EA  L+ +M+     P++VT  SL+ G C+   ++EA++L+ EM  KG  PN
Sbjct: 408 LSKHHKVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPN 467

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
             TY++LM G  K     +A  LL  M          TY+ L+NGLC   ++ E  E+L 
Sbjct: 468 EVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLK 527

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           R   +G  P    Y  II+ F   G    A     +M   GITPN +T++       + +
Sbjct: 528 RFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYT-------SFI 580

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            G C+T+  + A ++ + MR   I  D   Y++ I  FCK+G++  +   +  L+ DG  
Sbjct: 581 DGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLT 640

Query: 440 PDEGTWSAVMTALWDRRKMRQAAEL 464
           P+   +++ +T   + + M +A++ 
Sbjct: 641 PNVTVYNSFVTGYKNLKMMAEASKF 665



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 178/378 (47%), Gaps = 14/378 (3%)

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           D+ +  C   GR+H   DA+R+FD+M   G +P  + Y   +  L +      A +    
Sbjct: 192 DVVMRACV-VGRMHG--DAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGK 248

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRL 204
           MRE G++P   + N ++  L K  G MD A ++  +M    G   D +   TL+ G C  
Sbjct: 249 MREAGLKPRDFTYNSVVDVLVK-VGRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCLH 307

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G+I +A +LF E      +PT VTYT LI G       +E  +L  +M  +G+ P+ + +
Sbjct: 308 GEIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEF 367

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + ++ GL +      A+ L  +++     P++ TY  L++ L K  K+ EAV + D+MK 
Sbjct: 368 NLVIKGLLRNKQWEDAIALFDLVVDTG-VPDVFTYGCLIHWLSKHHKVHEAVNLWDKMKE 426

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G+KP       ++  +C+ G   EA     EM   G  PN +T++       T+++G  
Sbjct: 427 AGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYT-------TLMKGYI 479

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           K    ++A+ +   M    +S    TY+ LI   C    + +   ++   V +G +P   
Sbjct: 480 KKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTM 539

Query: 444 TWSAVMTALWDRRKMRQA 461
           T+++++        M  A
Sbjct: 540 TYNSIINGFVKAGMMGSA 557



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 145/327 (44%), Gaps = 1/327 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +  T++ ++   +    F  A  LL+ +++      E  +  +  G   V R  + 
Sbjct: 463 GFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEV 522

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +    G  PT  +Y +++   V+   +  A   YR M E GI P + +    I  
Sbjct: 523 DEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDG 582

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+ +   D A K+   M   G  PD   Y   IN  C+ G +  A      +     +P
Sbjct: 583 YCR-TNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTP 641

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V  Y S + G    K + EA + +  M  + +  +   Y++L+DG  K G  + A+EL 
Sbjct: 642 NVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTTLIDGFSKVGNVAFALELY 701

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M++  + P+  T++ L +GLC+ G +  A  +LD M    + P+   Y  +I+     
Sbjct: 702 SEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLDVCPNTVTYNMLINAHIRD 761

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSL 371
           GK QEA    D+M+  G+ P+  T+++
Sbjct: 762 GKLQEAFQLHDKMLSSGVVPDDTTYNI 788



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 164/403 (40%), Gaps = 41/403 (10%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T+  +I  L   ++   A +L D++ +     +     S+  GY       +A++++
Sbjct: 397 DVFTYGCLIHWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLY 456

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK- 167
            +M   G  P   +Y T++   +++     A+     M + G+     + N+LI  LC  
Sbjct: 457 SEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMV 516

Query: 168 ---------------------------------NSGTMDAAFKIFREMPNRGCTPDSYTY 194
                                             +G M +A  ++R+M  +G TP+  TY
Sbjct: 517 DRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEKGITPNIVTY 576

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            + I+G CR      A +L   M      P +  Y + IN  C+  ++  A+     +  
Sbjct: 577 TSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLK 636

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G+ PNV  Y+S + G       ++A +    MI +R   +   Y+TL++G  K G +  
Sbjct: 637 DGLTPNVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTTLIDGFSKVGNVAF 696

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A+E+   M      PD   +  +    C  G    A   LD+M    + PN +T+++ I 
Sbjct: 697 ALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLDVCPNTVTYNMLIN 756

Query: 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL-ITC 416
            H  +  G  +     AFQ++  M +  +  D  TY+   +TC
Sbjct: 757 AH--IRDGKLQ----EAFQLHDKMLSSGVVPDDTTYNIFPLTC 793



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 143/318 (44%), Gaps = 35/318 (11%)

Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
           +  M  RG  PD+ +   L+    R     +A  LF EM  K        Y  ++     
Sbjct: 141 YSRMVTRGVVPDAKSRTDLLVATARGASAADALTLFDEMRCKGYYADAKMYDVVMRACVV 200

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
            +   +A+RLF+EM   GV+P+   Y+  + GLCK   + +A+++L  M     +P   T
Sbjct: 201 GRMHGDAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAGLKPRDFT 260

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQ-GLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           Y+++++ L K G++ EA+ + D+M L  G K D  L   ++  +C  G+  +A +  DE 
Sbjct: 261 YNSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCLHGEIGKALDLFDEA 320

Query: 358 VLGGITPNRLTWSLHIRI----------------------------HNTVVQGLCKTDPN 389
           V  G+TP  +T+++ I+                              N V++GL +   N
Sbjct: 321 VRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLR---N 377

Query: 390 RAFQVYLSMRNRSISV---DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           + ++  +++ +  +     D  TY  LI    K   +H++  + D++   G  P   T  
Sbjct: 378 KQWEDAIALFDLVVDTGVPDVFTYGCLIHWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCH 437

Query: 447 AVMTALWDRRKMRQAAEL 464
           +++    ++  M +A +L
Sbjct: 438 SLLLGYCEKGCMDEALKL 455



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 82/222 (36%), Gaps = 36/222 (16%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D + ++  I+          A   L  + K+       ++ S   GY        
Sbjct: 602 NGIHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVTVYNSFVTGYKN------ 655

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
                                  L ++ E      A +FY  M +  I         LI 
Sbjct: 656 -----------------------LKMMAE------ASKFYYSMIKQRIAADTEIYTTLID 686

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
              K  G +  A +++ EM      PD  T+  L +GLCR G I  AK L  +M      
Sbjct: 687 GFSK-VGNVAFALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLDVC 745

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           P  VTY  LIN   +   ++EA +L ++M S GV P+  TY+
Sbjct: 746 PNTVTYNMLINAHIRDGKLQEAFQLHDKMLSSGVVPDDTTYN 787


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 200/418 (47%), Gaps = 7/418 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFLSICRGYGRVHRPLD 103
           G+RH    +  MI  L    QF     L++ + KE    +T ++F+ + R +  V     
Sbjct: 136 GYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKK 195

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ V D+M ++GCEP    +  +L  L +   +K A   +  MR +   P +     L+ 
Sbjct: 196 AVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMR-VRFNPNLRHFTSLLY 254

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C+    M+A   +  ++   G  PD   Y  L+ G  + GK+ +A +L  EM+   C 
Sbjct: 255 GWCREGKIMEAK-HVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCG 313

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P   ++T LI   C+++ ++EAMR+F EM+  G E +V TY++L+ G CK G + +A E+
Sbjct: 314 PNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEI 373

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L  MI K H P+ ++Y  ++    K+ +L+E +E+++ M+  G  PD  +Y  +I   C 
Sbjct: 374 LDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCK 433

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
           +G  +EA     EM  GG+ P   T+ L   +H  + QG C  +    F+  +  R    
Sbjct: 434 LGDLKEAVRLWGEMQAGGLNPGLDTYIL--MVHGFLSQG-CLVEACDYFKEMVE-RGLLS 489

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           +    T   L     +   +  +  +   +   GC  +   W+  + AL+    +++A
Sbjct: 490 APQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHALFSNGHVKEA 547


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/408 (28%), Positives = 200/408 (49%), Gaps = 30/408 (7%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           + +DA+ +FDKM   G +     Y  ++  L +  Q + A   +R M          +  
Sbjct: 24  KVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYG 83

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           ++I +LCK+ G      K+FREM N G  P+   Y +LINGLCR+GK+ EA  LF EM +
Sbjct: 84  LVIDSLCKD-GLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVS 142

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +     V+TY SLI+  C+    +EA R F +M  +G+ P+V T+++L+D L K G   +
Sbjct: 143 QGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQE 202

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A ++ ++MI +   PNIVTY++LLNGLC   ++  AV + + M  +G+K D   Y  +I+
Sbjct: 203 AYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLIN 262

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------------------------- 374
            +C  GK +EA     +M    +TP+  T+++ ++                         
Sbjct: 263 GYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSP 322

Query: 375 ---IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
               +  ++ GLCK      A  V+ S+++         YS LI    +      +  I 
Sbjct: 323 SLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIF 382

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           DE+   G +P+  T++ ++  L    K+ +A  L +    + C + E+
Sbjct: 383 DEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEI 430



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 220/442 (49%), Gaps = 12/442 (2%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           E  V  AL +FD  T    +GF+ D   +  +I+ L    Q R A +L  R+  E C   
Sbjct: 22  EGKVMDALELFDKMTR---SGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGN 78

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              +  +     +    +  +++F +M   G  P    Y +++  L    +L+ A   + 
Sbjct: 79  FFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFD 138

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M   GI+  V + N LI A C+  G    A + F +M   G  PD  T+ TLI+ L + 
Sbjct: 139 EMVSQGIKANVITYNSLIHASCR-FGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKK 197

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           GK+ EA ++F+ M  +  +P +VTY SL+NGLC    ++ A+RLFE M  +G++ +V +Y
Sbjct: 198 GKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISY 257

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           ++L++G C  G + +AM L + M  +   P+I TY+ LL  L + G+++ A E+ + M++
Sbjct: 258 NTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQI 317

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G  P    Y  ++   C  G  +EA +    +         + +   IRI++ ++ G+ 
Sbjct: 318 CGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSL-------KSIKYKPSIRIYSILIGGMF 370

Query: 385 KTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           +      A +++  +    +  + +TY+ +I   CK+G + ++ R+  ++   GC  DE 
Sbjct: 371 QARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEI 430

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           +++ ++       ++++A E L
Sbjct: 431 SFNFIIRGFLQENQVQKAMEFL 452



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 168/317 (52%), Gaps = 9/317 (2%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G QP + +++ L+K +C     MDA  ++F +M   G   D   YG LIN L +  +   
Sbjct: 4   GYQPNLVTVSTLVKGMCFEGKVMDA-LELFDKMTRSGFQGDILLYGYLINALRKTRQARR 62

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A EL + M ++ CS    TY  +I+ LC+     + +++F EM + G+ PNV  YSSL++
Sbjct: 63  AVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLIN 122

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           GLC+ G   +A+ L   M+S+  + N++TY++L++  C+ G  +EA     +M  +G+ P
Sbjct: 123 GLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILP 182

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDP 388
           D   +  +I      GK QEA    + M+  G  PN +T+       N+++ GLC     
Sbjct: 183 DVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTY-------NSLLNGLCLHHQM 235

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           + A +++  M  R I +D ++Y++LI  +C  G   ++  +  ++  +   P   T++ +
Sbjct: 236 DHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTIL 295

Query: 449 MTALWDRRKMRQAAELL 465
           + AL+   ++R A EL 
Sbjct: 296 LKALYQNGRIRTAKELF 312



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 164/317 (51%), Gaps = 2/317 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
             G   D  TF+ +I  L    + + A  + + + K+        + S+  G    H+  
Sbjct: 177 GEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMD 236

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+R+F+ M E G +    SY T++       + + A   +R M+   + P + +  +L+
Sbjct: 237 HAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILL 296

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           KAL +N G +  A ++F  M   G +P   TY  L++GLC+ G I EA ++F+ +++   
Sbjct: 297 KALYQN-GRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKY 355

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P++  Y+ LI G+ Q++  E AM +F+E+ + G+ PN+ TY+ +++GLCK G   +A  
Sbjct: 356 KPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAER 415

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF- 341
           L   M       + ++++ ++ G  +E ++Q+A+E L RM+ +   P+  +   +++ + 
Sbjct: 416 LFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYA 475

Query: 342 CDIGKYQEAANFLDEMV 358
            D    +   NFL E+V
Sbjct: 476 ADAQSSELPNNFLHELV 492



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 10/222 (4%)

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G +PN+ T S+L+ G+C  G    A+EL   M     + +I+ Y  L+N L K  + + A
Sbjct: 4   GYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRA 63

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           VE+  RM  +    +   YG +I   C  G   +      EM+  GI PN + +S     
Sbjct: 64  VELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYS----- 118

Query: 376 HNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             +++ GLC+    R A  ++  M ++ I  + +TY+SLI   C+ G   ++ R   ++V
Sbjct: 119 --SLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMV 176

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476
            +G LPD  T++ ++  L  + K+++A +  + ELM K  EA
Sbjct: 177 GEGILPDVVTFTTLIDHLSKKGKVQEAYK--IFELMIKQGEA 216


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 233/494 (47%), Gaps = 49/494 (9%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV-NKEKCDI 83
           E +V+KA  +F     +   GF  +  T++ +I  L  A     AE +L ++ +K + + 
Sbjct: 152 EGEVDKAYTLFHEMLGQ---GFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEE 208

Query: 84  TEDIFLSICRG---------------YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
              +   +  G               Y ++ R  +A  +FD M   G  P   +Y T+L 
Sbjct: 209 AVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLH 268

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
               +  L         M + GI       N+LI+A  KN  T+D A   F EM  +G +
Sbjct: 269 GYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNE-TLDKAMTAFIEMRQKGFS 327

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+  TY T+I+ LC+ G++ +A   F +M ++  SP ++T+TSLI+GLC     ++  +L
Sbjct: 328 PNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKL 387

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             EM ++G+ PN    +++MD LCK G   +A +    +I    +P++V+Y+ L++G C 
Sbjct: 388 SFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCL 447

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           +GK+ E++++L RM   GL+PD   Y  +++ +C  G+  +A     EM    + PN +T
Sbjct: 448 DGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAIT 507

Query: 369 WS----------------------------LHIRIHNTVVQGLCKTD-PNRAFQVYLSMR 399
           ++                            L I  +N V+ GLC+    + A +++  +R
Sbjct: 508 YNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLR 567

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           ++   ++  T++ +I    K G I  +  +   ++  G +PD   +  ++ +  +   + 
Sbjct: 568 SKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLE 627

Query: 460 QAAELLLLELMNKC 473
           ++ EL L    N C
Sbjct: 628 ESDELFLSMEKNGC 641



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 197/429 (45%), Gaps = 45/429 (10%)

Query: 34  IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           IFDS       G   D  T+  ++    +        DLL  + ++   + + +F  + R
Sbjct: 247 IFDSMVRR---GQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIR 303

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
            Y +      AM  F +M++ G  P   +Y TV+ IL +  +++ A   +  M   G+ P
Sbjct: 304 AYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSP 363

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            + +   LI  LC   G      K+  EM NRG  P++    T+++ LC+ G++ EA + 
Sbjct: 364 DIITFTSLIHGLC-TIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDF 422

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F ++      P VV+YT LI+G C    ++E+++L   M S G+ P+  TYS+L++G CK
Sbjct: 423 FDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCK 482

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
            G    A+ L + M SK  +PN +TY+ +L+GL   G++  A E   ++   G++     
Sbjct: 483 NGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINT 542

Query: 334 YGKIISCFCD-----------------------------------IGKYQEAANFLDEMV 358
           Y  ++   C+                                   +G+  +A +    ++
Sbjct: 543 YNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAIL 602

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
             G+ P+ + + L I+ H  + +GL +       +++LSM     + +S T ++++    
Sbjct: 603 PSGLVPDAIIYGLMIQSH--IEEGLLEESD----ELFLSMEKNGCTANSRTLNAIVRKLL 656

Query: 419 KKGDIHKSA 427
           +KGD+ ++ 
Sbjct: 657 EKGDVRRAG 665



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 188/404 (46%), Gaps = 15/404 (3%)

Query: 21  LIRA---EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           LIRA    + ++KA+  F     +   GF  +  T++ +I  L  A +   A     ++ 
Sbjct: 301 LIRAYAKNETLDKAMTAFIEMRQK---GFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMV 357

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
            E        F S+  G   +       ++  +M   G  P      T++  L +E ++ 
Sbjct: 358 SEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVL 417

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A  F+  +  +G++P V S  +LI   C + G MD + K+   M + G  PD+ TY  L
Sbjct: 418 EAHDFFDQIIHVGVKPDVVSYTILIDGYCLD-GKMDESIKLLGRMVSIGLRPDNVTYSAL 476

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           +NG C+ G++ +A  L++EM +K   P  +TY  +++GL  +  V  A   + ++   G+
Sbjct: 477 LNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGI 536

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
           +  + TY+ ++ GLC+     +A+ + Q + SK  +  + T++ ++ GL K G++ +A  
Sbjct: 537 QLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKS 596

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +   +   GL PDA +YG +I    + G  +E+      M   G T N  T        N
Sbjct: 597 LFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTL-------N 649

Query: 378 TVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
            +V+ L  K D  RA      +  +  SV++ T   LI+   ++
Sbjct: 650 AIVRKLLEKGDVRRAGTYLTKIDEKEYSVEASTAVLLISIVSER 693



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 154/331 (46%), Gaps = 38/331 (11%)

Query: 175 AFKIFREMPNRGC---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA---------- 221
           A  +F  M   G      D+ T+G LI   C +G +  A E        A          
Sbjct: 75  AVSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYN 134

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P V++Y  +INGL +   V++A  LF EM  +G  PN+ TY+S++DGLCK     +A 
Sbjct: 135 CPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAE 194

Query: 282 ELLQMMISKRH----------------RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
            +LQ M  K                  +P++VTYS L++  CK G+  EA  I D M  +
Sbjct: 195 AVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRR 254

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G  PDA  Y  ++  +   G   +  + L  M+  GI        L   + N +++   K
Sbjct: 255 GQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGI-------PLEDHVFNILIRAYAK 307

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
            +  ++A   ++ MR +  S + +TY+++I   CK G +  +     ++V +G  PD  T
Sbjct: 308 NETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIIT 367

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
           +++++  L    + ++  E L  E++N+ + 
Sbjct: 368 FTSLIHGLCTIGEWKK-VEKLSFEMINRGIH 397



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 103/266 (38%), Gaps = 44/266 (16%)

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ-------AMELLQMMIS-- 289
           S  +E+A+ LF+E+  +    +V  ++ ++  +  G  SS        A+ L   M    
Sbjct: 27  SLGLEDALNLFDELLPRARSASVHAFNRVLTVVAHGDSSSSQRHGAALAVSLFNTMAQVG 86

Query: 290 -KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR--------MKLQGLK--PDAGLYGKII 338
             +   +  T+  L+   C  G L  A+E   R        M   G    P+   Y  +I
Sbjct: 87  VNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVI 146

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP---------- 388
           +     G+  +A     EM+  G  PN +T+       N+V+ GLCK             
Sbjct: 147 NGLFKEGEVDKAYTLFHEMLGQGFPPNIVTY-------NSVIDGLCKAQAMDKAEAVLQQ 199

Query: 389 -------NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
                    A ++   M    +  D +TYS LI  +CK G   ++  I D +V  G  PD
Sbjct: 200 MFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPD 259

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLL 467
             T+  ++     +  +    +LL L
Sbjct: 260 AYTYRTLLHGYATKGALVDMHDLLAL 285


>gi|224064366|ref|XP_002301440.1| predicted protein [Populus trichocarpa]
 gi|222843166|gb|EEE80713.1| predicted protein [Populus trichocarpa]
          Length = 503

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 243/473 (51%), Gaps = 20/473 (4%)

Query: 7   FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF 66
            +W   +T  Q+ Q++R++K+   AL IF  A  +Y + + H+   ++ MIS L ++++ 
Sbjct: 3   IRWPRLLTPTQLSQILRSQKNPLTALQIFKDAKDKYPS-YHHNGPVYATMISILGNSDRI 61

Query: 67  RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
              ++++D++  + C+  + +F++  + Y    +  +A+ +F  + +F C    +S+ T+
Sbjct: 62  AEMKEVIDQMRDDSCECKDSVFVTAIKTYASAGQISEAVSLFKNIPKFNCVNWTESFNTL 121

Query: 127 LAILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           L ILV+E++L+ A RF+  +     ++  + +LN+L+  LC+ + + D A +IF+EM  +
Sbjct: 122 LQILVKESKLETAHRFFLENSCGWEVKSRIRALNLLLDVLCQRNRS-DLALQIFQEMDYQ 180

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKEL----FKEMETKACSPTVVTYTSLINGLCQSKS 241
           GC P+  +Y  L+ GLC  G++ EA  L    F  +  K     +V Y +L++ LC +  
Sbjct: 181 GCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKGSGEDIVVYRTLLDALCDNGQ 240

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL-QMMISKRHRPNIVTYS 300
           VEEAM +  ++  KG++        L    C      +A +LL    + +   P++ +Y+
Sbjct: 241 VEEAMEILGKILRKGLKAPKRYRHRLDLSQCNNCEDIEATKLLINEALIRGGVPSLASYT 300

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD-EMVL 359
            +   L  EGK  +A ++LD  + +G +P    Y   ++  C  G+  EA N ++ EMV 
Sbjct: 301 AMAVDLYCEGKTGQADKVLDETQERGYRPSLRTYEAKVTALCRQGRSGEAINVIEREMVE 360

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS--VDSLTYSSLITCF 417
               PN       +R++N +++GLC    +     YL    + +    +  TY  L+   
Sbjct: 361 RNSVPN-------VRLYNVLLKGLCDAGNSAIAVSYLKRMAKQVGCVANQETYGILVDGL 413

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           C+ G   +++++++E+++    P   T++ ++  L      RQ   ++ LE M
Sbjct: 414 CRDGRFVEASKVLEEMLIKSYWPPADTYNILIRGL--SSMGRQYEAVIWLEEM 464



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 146/324 (45%), Gaps = 6/324 (1%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRPLDAM-RV 107
             +L++  L   N+   A  +   ++ + C    D +  + RG    GR++     +  +
Sbjct: 153 ALNLLLDVLCQRNRSDLALQIFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSM 212

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           F ++ + G       Y T+L  L +  Q++ A      +   G++      + L  + C 
Sbjct: 213 FWRISQKGSGEDIVVYRTLLDALCDNGQVEEAMEILGKILRKGLKAPKRYRHRLDLSQCN 272

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N   ++A   +  E   RG  P   +Y  +   L   GK  +A ++  E + +   P++ 
Sbjct: 273 NCEDIEATKLLINEALIRGGVPSLASYTAMAVDLYCEGKTGQADKVLDETQERGYRPSLR 332

Query: 228 TYTSLINGLCQSKSVEEAMRLFE-EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           TY + +  LC+     EA+ + E EM  +   PNV  Y+ L+ GLC  G S+ A+  L+ 
Sbjct: 333 TYEAKVTALCRQGRSGEAINVIEREMVERNSVPNVRLYNVLLKGLCDAGNSAIAVSYLKR 392

Query: 287 MISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           M  +     N  TY  L++GLC++G+  EA ++L+ M ++   P A  Y  +I     +G
Sbjct: 393 MAKQVGCVANQETYGILVDGLCRDGRFVEASKVLEEMLIKSYWPPADTYNILIRGLSSMG 452

Query: 346 KYQEAANFLDEMVLGGITPNRLTW 369
           +  EA  +L+EMV     P    W
Sbjct: 453 RQYEAVIWLEEMVSQDKLPELYVW 476



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 169/383 (44%), Gaps = 56/383 (14%)

Query: 101 PLDAMRVFDKMKEF--GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           PL A+++F   K+           Y T+++IL   +++         MR+   + C  S+
Sbjct: 24  PLTALQIFKDAKDKYPSYHHNGPVYATMISILGNSDRIAEMKEVIDQMRDDSCE-CKDSV 82

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
            V       ++G +  A  +F+ +P   C   + ++ TL+  L +  K+  A   F E  
Sbjct: 83  FVTAIKTYASAGQISEAVSLFKNIPKFNCVNWTESFNTLLQILVKESKLETAHRFFLE-- 140

Query: 219 TKACSPTVVTYTS----LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
             +C   V +       L++ LCQ    + A+++F+EM  +G  PN  +Y  LM GLC+ 
Sbjct: 141 -NSCGWEVKSRIRALNLLLDVLCQRNRSDLALQIFQEMDYQGCYPNRDSYRILMRGLCED 199

Query: 275 GCSSQAMELLQMMI----SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           G  ++A  LL  M      K    +IV Y TLL+ LC  G+++EA+EIL ++  +GLK  
Sbjct: 200 GRLNEATHLLYSMFWRISQKGSGEDIVVYRTLLDALCDNGQVEEAMEILGKILRKGLKAP 259

Query: 331 AGLYGKIISCFCDIGKYQEAANFL-DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
                ++    C+  +  EA   L +E ++ G  P+  +++                   
Sbjct: 260 KRYRHRLDLSQCNNCEDIEATKLLINEALIRGGVPSLASYT------------------- 300

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
                       +++VD          +C+ G   ++ +++DE    G  P   T+ A +
Sbjct: 301 ------------AMAVD---------LYCE-GKTGQADKVLDETQERGYRPSLRTYEAKV 338

Query: 450 TALWDRRKMRQAAELLLLELMNK 472
           TAL  + +  +A  ++  E++ +
Sbjct: 339 TALCRQGRSGEAINVIEREMVER 361



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 1/170 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLI 162
           A +V D+ +E G  P+ ++Y   +  L  + +   A     R M E    P V   NVL+
Sbjct: 315 ADKVLDETQERGYRPSLRTYEAKVTALCRQGRSGEAINVIEREMVERNSVPNVRLYNVLL 374

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K LC    +  A   + R     GC  +  TYG L++GLCR G+  EA ++ +EM  K+ 
Sbjct: 375 KGLCDAGNSAIAVSYLKRMAKQVGCVANQETYGILVDGLCRDGRFVEASKVLEEMLIKSY 434

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            P   TY  LI GL       EA+   EEM S+   P ++ + SL+  +C
Sbjct: 435 WPPADTYNILIRGLSSMGRQYEAVIWLEEMVSQDKLPELYVWRSLVTSVC 484



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 5/196 (2%)

Query: 150 GIQPCVASLNVL-IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
           G  P +AS   + +   C+  G    A K+  E   RG  P   TY   +  LCR G+  
Sbjct: 291 GGVPSLASYTAMAVDLYCE--GKTGQADKVLDETQERGYRPSLRTYEAKVTALCRQGRSG 348

Query: 209 EAKELF-KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM-RSKGVEPNVFTYSS 266
           EA  +  +EM  +   P V  Y  L+ GLC + +   A+   + M +  G   N  TY  
Sbjct: 349 EAINVIEREMVERNSVPNVRLYNVLLKGLCDAGNSAIAVSYLKRMAKQVGCVANQETYGI 408

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+DGLC+ G   +A ++L+ M+ K + P   TY+ L+ GL   G+  EAV  L+ M  Q 
Sbjct: 409 LVDGLCRDGRFVEASKVLEEMLIKSYWPPADTYNILIRGLSSMGRQYEAVIWLEEMVSQD 468

Query: 327 LKPDAGLYGKIISCFC 342
             P+  ++  +++  C
Sbjct: 469 KLPELYVWRSLVTSVC 484


>gi|199601721|dbj|BAG70980.1| pentatricopeptide (PPR) repeat-containing protein [Musa balbisiana]
          Length = 788

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 138/514 (26%), Positives = 242/514 (47%), Gaps = 62/514 (12%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE-DLLDRV 76
           VL ++R  +  + AL  F         GFRHD  T+  +I  L  A+    A   LLD +
Sbjct: 148 VLAVLRGARHPDHALHFFRWVEK---TGFRHDPDTYREIILLLARASMLNHARCILLDDM 204

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
                  +ED+F S+  GYG    P +A+++F ++ E G   T +SY  V   ++   ++
Sbjct: 205 PDRLVPPSEDMFASLIEGYGCARIPQEAVKIFRRLPELGVTRTVRSYDAVFKAILRSGRV 264

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
            +A R +  M   G+ P +++ N L+   C  S  M+ A + F +M  RG  PD  TY T
Sbjct: 265 AMARRLFNAMIAEGVLPVLSTYNTLLWGFCL-SIKMETAQRFFADMKERGIAPDLVTYNT 323

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++NG  R  K+ +A+++F EM     +P  ++Y  +I G   S  V++ +R+F EM  KG
Sbjct: 324 ILNGWARAKKMDDAEKVFAEMTAAGFAPNSISYNIMIKGYVCSGRVDDGLRMFSEMGEKG 383

Query: 257 VEPNVFTYSSLMDGLCKG-GCSSQA------MELLQMMISKR------------------ 291
           +  +  T+++LM GLC   G +++A      M  LQ+  S +                  
Sbjct: 384 LRFSEKTFAALMPGLCDDVGRAAEARKALNEMAKLQLTPSDKSIFLRLVTSLCESGDLEG 443

Query: 292 ----HRP---------NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG---------LKP 329
               HR          + + Y  LL  LCK  K + A+ +LD +  +G         L+P
Sbjct: 444 ALEVHRKTSQFNHVVVDPMQYGVLLESLCKGEKHESAIALLDELLEKGTMQSPQYPTLEP 503

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
            A  Y  +I   CD G  ++A  F  +++  G+  +++ ++  IR H    +G+    P 
Sbjct: 504 SA--YNPMIEYLCDHGDTKKAEAFFRQLMKKGVD-DKVAFNSLIRGHAK--EGM----PE 554

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            A ++   M    +  D+ +Y  L+  F KK +   +   +D ++  G LP    + +VM
Sbjct: 555 AASEILTIMTRHGVPTDADSYVLLVESFLKKSEPADARTALDSMMEQGHLPSASLFRSVM 614

Query: 450 TALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQ 483
            AL+D  ++ Q A  ++  ++ K V+  +D+ ++
Sbjct: 615 VALFDDGRV-QTASRVMKSMIEKGVKENMDMVHK 647



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 189/407 (46%), Gaps = 26/407 (6%)

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF-RFY 143
           + + L++ RG      P  A+  F  +++ G    P +Y  ++ +L   + L  A     
Sbjct: 145 QSLVLAVLRG---ARHPDHALHFFRWVEKTGFRHDPDTYREIILLLARASMLNHARCILL 201

Query: 144 RHMREIGIQPCVASLNVLIKAL-CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
             M +  + P       LI+   C        A KIFR +P  G T    +Y  +   + 
Sbjct: 202 DDMPDRLVPPSEDMFASLIEGYGCAR--IPQEAVKIFRRLPELGVTRTVRSYDAVFKAIL 259

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           R G++  A+ LF  M  +   P + TY +L+ G C S  +E A R F +M+ +G+ P++ 
Sbjct: 260 RSGRVAMARRLFNAMIAEGVLPVLSTYNTLLWGFCLSIKMETAQRFFADMKERGIAPDLV 319

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY+++++G  +      A ++   M +    PN ++Y+ ++ G    G++ + + +   M
Sbjct: 320 TYNTILNGWARAKKMDDAEKVFAEMTAAGFAPNSISYNIMIKGYVCSGRVDDGLRMFSEM 379

Query: 323 KLQGLKPDAGLYGKIISCFC-DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
             +GL+     +  ++   C D+G+  EA   L+EM    +TP+    S+ +R+    V 
Sbjct: 380 GEKGLRFSEKTFAALMPGLCDDVGRAAEARKALNEMAKLQLTPS--DKSIFLRL----VT 433

Query: 382 GLCKT-DPNRAFQVYLSMRN-RSISVDSLTYSSLITCFCKKGDIHKSA-RIVDELVLDGC 438
            LC++ D   A +V+        + VD + Y  L+   C KG+ H+SA  ++DEL+  G 
Sbjct: 434 SLCESGDLEGALEVHRKTSQFNHVVVDPMQYGVLLESLC-KGEKHESAIALLDELLEKGT 492

Query: 439 LP-------DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +        +   ++ ++  L D    ++ AE    +LM K V+ +V
Sbjct: 493 MQSPQYPTLEPSAYNPMIEYLCDHGDTKK-AEAFFRQLMKKGVDDKV 538



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 154/352 (43%), Gaps = 19/352 (5%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K ++ A  +F   TA    GF  ++ ++++MI   V + +      +   + ++    +E
Sbjct: 332 KKMDDAEKVFAEMTAA---GFAPNSISYNIMIKGYVCSGRVDDGLRMFSEMGEKGLRFSE 388

Query: 86  DIFLSICRGY-GRVHRPLDAMRVFDKMKEFGCEPTPKS-YITVLAILVEENQLKLAFRFY 143
             F ++  G    V R  +A +  ++M +    P+ KS ++ ++  L E   L+ A   +
Sbjct: 389 KTFAALMPGLCDDVGRAAEARKALNEMAKLQLTPSDKSIFLRLVTSLCESGDLEGALEVH 448

Query: 144 R---HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC-------TPDSYT 193
           R       + + P      VL+++LCK     ++A  +  E+  +G        T +   
Sbjct: 449 RKTSQFNHVVVDPM--QYGVLLESLCKGE-KHESAIALLDELLEKGTMQSPQYPTLEPSA 505

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y  +I  LC  G   +A+  F+++  K     V  + SLI G  +    E A  +   M 
Sbjct: 506 YNPMIEYLCDHGDTKKAEAFFRQLMKKGVDDKVA-FNSLIRGHAKEGMPEAASEILTIMT 564

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             GV  +  +Y  L++   K    + A   L  M+ + H P+   + +++  L  +G++Q
Sbjct: 565 RHGVPTDADSYVLLVESFLKKSEPADARTALDSMMEQGHLPSASLFRSVMVALFDDGRVQ 624

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
            A  ++  M  +G+K +  +  KI+      G  +EA   ++ M++   TP+
Sbjct: 625 TASRVMKSMIEKGVKENMDMVHKILDALFMRGHVEEALGRINLMIMNDCTPD 676


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 217/474 (45%), Gaps = 29/474 (6%)

Query: 13  ITSAQVLQ--------------LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMIS 58
           ITS Q LQ              L+ A   +     +F      +  G   +  T +++I+
Sbjct: 75  ITSTQALQFFDLMMRSIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILIN 134

Query: 59  KLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEP 118
            L + N+ R     +  + +         + S+ +G    HR  +A R+F +M++ GC P
Sbjct: 135 CLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWP 194

Query: 119 TPKSYITVLAILVEENQLKLAFRFYRHM------REIGIQPCVASLNVLIKALCKNSGTM 172
              +Y T++  L     + LA + ++ M        I  +P + S N++I  LCK  G  
Sbjct: 195 NVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCK-IGKW 253

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
             A ++F EM ++G  PD  T+  LI+ LC+ G + EAK+  + M  +   P + T+TSL
Sbjct: 254 KEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSL 313

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I G C    ++ A  LF  M SKG EP+V +Y+ L+ G CK     +AM+L   M+    
Sbjct: 314 IEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGK 373

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            P++ T+  LL GL   GK+ +A ++   +K   +  +  +    +   C  G   EA  
Sbjct: 374 WPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAME 433

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYS 411
             +E+             L I   N ++ GLCK      A++++  +    +  D +TY 
Sbjct: 434 LFNEL-------KSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYC 486

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +I  FCK G +  +  +   +  +GC P+  T+SA++   +   K+ +  +LL
Sbjct: 487 IMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLL 540



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 147/292 (50%), Gaps = 5/292 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHRPL 102
           G R D  TFS +I  L        A+  L+ +      I  D+F   S+  G+  V    
Sbjct: 267 GVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLR--GIVPDLFTFTSLIEGFCLVGDLD 324

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A  +F  M   G EP   SY  ++    +   ++ A + Y  M  +G  P + +  VL+
Sbjct: 325 SAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLL 384

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K L   +G +  A K+F  +       + Y     ++GLC+ G ++EA ELF E+++   
Sbjct: 385 KGLFL-AGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNM 443

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              + ++  LI+GLC+++ +E A  LFE++  +G++P+V TY  +++G CK G    A  
Sbjct: 444 KLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANI 503

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           L QMM      PN++TYS LL+G  K  KL+E V++L +M  + +   A +Y
Sbjct: 504 LFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIY 555



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 127/243 (52%), Gaps = 2/243 (0%)

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           +++++  L+  L + K   +   L+++M   G+ PN FT + L++ LC      + +  +
Sbjct: 90  SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAM 149

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             ++ + + P++VTY++L+ GLC E ++ EA  +  RM+  G  P+   YG +I   C  
Sbjct: 150 AGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRT 209

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G    A     EM L G +P  +    +I  +N ++  LCK      A +++  M ++ +
Sbjct: 210 GNINLALKLHQEM-LNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGV 268

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D +T+S+LI   CK+G + ++ + ++ ++L G +PD  T+++++        +  A E
Sbjct: 269 RPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKE 328

Query: 464 LLL 466
           L L
Sbjct: 329 LFL 331



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 137/281 (48%), Gaps = 1/281 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  TF+ +I           A++L   +  +  +     +  +  GY +     +A
Sbjct: 302 GIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEA 361

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M+++++M   G  P  K++  +L  L    ++  A + +  ++   +   +   +V +  
Sbjct: 362 MKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDG 421

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCKN G +  A ++F E+ +     D  ++  LI+GLC+  K+  A ELF+++  +   P
Sbjct: 422 LCKN-GCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQP 480

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY  +ING C++  V+ A  LF+ M   G  PN+ TYS+L+ G  K     + ++LL
Sbjct: 481 DVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLL 540

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
             MI K        Y+ + + + K+ K +E ++IL R  +Q
Sbjct: 541 HKMIQKDVSLAASIYTIVEDMVSKDEKCREWLDILQRFPVQ 581



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 100/195 (51%), Gaps = 7/195 (3%)

Query: 104 AMRVFDKMKEFGC---EPTPKS-YI--TVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           A +V D  K FG       PK+ YI    L  L +   L  A   +  ++   ++  + S
Sbjct: 390 AGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIES 449

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N LI  LCK +  ++ A+++F ++   G  PD  TY  +ING C+ G++  A  LF+ M
Sbjct: 450 FNCLIDGLCK-ARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMM 508

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           E   C+P ++TY++L++G  ++  +EE ++L  +M  K V      Y+ + D + K    
Sbjct: 509 EENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDEKC 568

Query: 278 SQAMELLQMMISKRH 292
            + +++LQ    ++H
Sbjct: 569 REWLDILQRFPVQKH 583


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 219/468 (46%), Gaps = 43/468 (9%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR-VNKEKCDITEDIF 88
           +AL + D     +  G +    ++++++S L  A+    A  L  R V++++   T   F
Sbjct: 121 RALHLLDQLPRRF--GVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTF 178

Query: 89  LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
               R   R+ R  +A+ +   M   GC P    Y TV+  L ++  +  A      M  
Sbjct: 179 GVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLL 238

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL---- 204
           +G    V + + +++ +C   G +  A ++   M  +GC P   TYG L+ GLCR+    
Sbjct: 239 MGCAADVNTFDDVVRGMC-GLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQAD 297

Query: 205 ---------------------------GKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
                                      GK+ EA EL++ M  K C P   TY+ L++GLC
Sbjct: 298 EARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLC 357

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +   +  A+RL  EM  KG  PNV TY+ ++   CK G       LL+ M +K    N  
Sbjct: 358 KLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQ 417

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
            Y+ ++  LCK+G++ EA+ ++  M+ QG  PD   Y  II   C+  + +EA +  + +
Sbjct: 418 GYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 477

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
           +  G+  N +T+       NT++  L +      A ++   M     S+D ++Y+ LI  
Sbjct: 478 LEEGVVANGITY-------NTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKA 530

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            CK G++ +S  +++E+   G  P+  +++ +++ L   R++R A EL
Sbjct: 531 MCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALEL 578



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 216/440 (49%), Gaps = 14/440 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D   +  +I  L        A  LL+ +    C    + F  + RG   + R  +
Sbjct: 204 HGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVRE 263

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A R+ D+M   GC P   +Y  +L  L    Q   A      + E+     V   N +I 
Sbjct: 264 AARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN----VVLFNTVIG 319

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C   G +  A +++  M  +GC PD++TY  L++GLC+LG+I  A  L +EME K  +
Sbjct: 320 G-CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFA 378

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTYT +++  C++   ++   L EEM +KG+  N   Y+ ++  LCK G   +AM L
Sbjct: 379 PNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGL 438

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +Q M S+   P+I +Y+T++  LC   +++EA  + + +  +G+  +   Y  II     
Sbjct: 439 IQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLR 498

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G++Q+A     EM+L G        SL +  +N +++ +CK  + +R+  +   M  + 
Sbjct: 499 DGRWQDAVRLAKEMILHGC-------SLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKG 551

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I  ++++Y+ LI+  CK+  +  +  +  +++  G  PD  T++ ++  L     M  AA
Sbjct: 552 IKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWM-HAA 610

Query: 463 ELLLLELMNKCVEAEVDIQN 482
             LL +L N+ V  ++   N
Sbjct: 611 LNLLEKLHNENVHPDIITYN 630



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 190/369 (51%), Gaps = 13/369 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  ++  L    Q   A  +L RV  E   +  +  +  C   G++    +A  +++ M
Sbjct: 282 TYGFLLQGLCRVRQADEARAMLGRV-PELNVVLFNTVIGGCLAEGKLA---EATELYETM 337

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC+P   +Y  ++  L +  ++  A R  R M + G  P V +  +++ + CKN G 
Sbjct: 338 GLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKN-GM 396

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D    +  EM  +G T +S  Y  +I  LC+ G++ EA  L +EM ++ C+P + +Y +
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNT 456

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I  LC ++ +EEA  +FE +  +GV  N  TY++++  L + G    A+ L + MI   
Sbjct: 457 IIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG 516

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              ++V+Y+ L+  +CK+G +  ++ +L+ M  +G+KP+   Y  +IS  C   + ++A 
Sbjct: 517 CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL 576

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTY 410
               +M+  G+ P+ +T+       NT++ GLCK    + A  +   + N ++  D +TY
Sbjct: 577 ELSKQMLNQGLAPDIVTY-------NTLINGLCKMGWMHAALNLLEKLHNENVHPDIITY 629

Query: 411 SSLITCFCK 419
           + LI+  CK
Sbjct: 630 NILISWHCK 638



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 163/354 (46%), Gaps = 45/354 (12%)

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLG 205
           R  G+QP   S NV++  L +     DA   ++R M +R    P ++T+G     LCRLG
Sbjct: 131 RRFGVQPSFRSYNVVLSVLARADCHADA-LALYRRMVHRDRVPPTTFTFGVAARALCRLG 189

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +  EA  L + M    C P  V Y ++I+ LC    V EA  L  EM   G   +V T+ 
Sbjct: 190 RANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFD 249

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK----------------- 308
            ++ G+C  G   +A  L+  M++K   P ++TY  LL GLC+                 
Sbjct: 250 DVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL 309

Query: 309 --------------EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
                         EGKL EA E+ + M L+G +PDA  Y  ++   C +G+   A   L
Sbjct: 310 NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLL 369

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT---DPNRAFQVYLSMRNRSISVDSLTYS 411
            EM   G  PN +T+++       V+   CK    D  RA      M  + ++++S  Y+
Sbjct: 370 REMEKKGFAPNVVTYTI-------VLHSFCKNGMWDDTRAL--LEEMSAKGLTLNSQGYN 420

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +I   CK G + ++  ++ E+   GC PD  +++ ++  L +  +M +A  + 
Sbjct: 421 GMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMF 474



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 1/311 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+S+++  L    +   A  LL  + K+        +  +   + +     D 
Sbjct: 341 GCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 400

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + ++M   G     + Y  ++  L ++ ++  A    + MR  G  P + S N +I  
Sbjct: 401 RALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYH 460

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N   M+ A  +F  +   G   +  TY T+I+ L R G+  +A  L KEM    CS 
Sbjct: 461 LCNNE-QMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSL 519

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV+Y  LI  +C+  +V+ ++ L EEM  KG++PN  +Y+ L+  LCK      A+EL 
Sbjct: 520 DVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELS 579

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+++   P+IVTY+TL+NGLCK G +  A+ +L+++  + + PD   Y  +IS  C +
Sbjct: 580 KQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKV 639

Query: 345 GKYQEAANFLD 355
               +AA  L+
Sbjct: 640 RLLDDAAMLLN 650



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 146/277 (52%), Gaps = 1/277 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +  T+++++        +     LL+ ++ +   +    +  +     +  R  +A
Sbjct: 376 GFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEA 435

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M +  +M+  GC P   SY T++  L    Q++ A   + ++ E G+     + N +I A
Sbjct: 436 MGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHA 495

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L ++ G    A ++ +EM   GC+ D  +Y  LI  +C+ G +  +  L +EM  K   P
Sbjct: 496 LLRD-GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKP 554

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             V+Y  LI+ LC+ + V +A+ L ++M ++G+ P++ TY++L++GLCK G    A+ LL
Sbjct: 555 NNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLL 614

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
           + + ++   P+I+TY+ L++  CK   L +A  +L+R
Sbjct: 615 EKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNR 651



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 1/207 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G   D  +++ +I  L +  Q   AE + + + +E        + +I     R  R  
Sbjct: 444 SQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQ 503

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+R+  +M   GC     SY  ++  + ++  +  +      M E GI+P   S N+LI
Sbjct: 504 DAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILI 563

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK     D A ++ ++M N+G  PD  TY TLINGLC++G ++ A  L +++  +  
Sbjct: 564 SELCKERRVRD-ALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 622

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLF 249
            P ++TY  LI+  C+ + +++A  L 
Sbjct: 623 HPDIITYNILISWHCKVRLLDDAAMLL 649



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 315 AVEILDRMKLQ-GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV-LGGITPNRLTWSLH 372
           A+ +LD++  + G++P    Y  ++S       + +A      MV    + P   T+ + 
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA 181

Query: 373 IRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
            R        LC+    N A  +   M       D++ Y ++I   C +G + ++A +++
Sbjct: 182 AR-------ALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLN 234

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           E++L GC  D  T+  V+  +    ++R+AA L+
Sbjct: 235 EMLLMGCAADVNTFDDVVRGMCGLGRVREAARLV 268


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 205/417 (49%), Gaps = 33/417 (7%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLD-RVNKEKCDITEDIFLSICRGYGR------- 97
           FRH   ++  MI  L +      A+ L+   V+++  D    +F +I    G        
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYV 68

Query: 98  ----VHRPLDAMRVFDKMKEFGCEPTPKSYI------TVLAILVEENQLKLAFRFYRHMR 147
               +   L++  + D ++ F      K ++       VL  L++    KL + FY+ + 
Sbjct: 69  FSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G    +   N+L+   CK  G M  A  +F  +   G  P   ++ TL++G  RLG +
Sbjct: 129 ECGYPASLYFFNILMHRFCKE-GEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDL 187

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            E   L   M      P V TY+ LINGLC+   ++EA  LF EM   G+ PN  T+++L
Sbjct: 188 DEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTL 247

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG CK G    AME+ + ++S+   P+++TY+TL+ GLCK+G L++A +++D M ++ L
Sbjct: 248 IDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKEL 307

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-- 385
           KPD   Y  +I   C  G  + A  +   M+   I  + + ++        ++ GLC+  
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYT-------ALISGLCQEG 360

Query: 386 --TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
              D  +  +  LS+    +  D+ TY+ +I  FCKKGD+   ++++ E+  DG +P
Sbjct: 361 RSVDAEKMLRGMLSV---GLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVP 414



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 130/281 (46%), Gaps = 36/281 (12%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +     + R A+ + D + K     +   F ++  GY R+    +  R+   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMH 198

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M + G+ P   +   LI   CKN G +
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKN-GRV 257

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I++++ ++G +PD  TY TLI GLC+ G + +A++L  EM  K   P  +TYT+L
Sbjct: 258 DLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTL 317

Query: 233 I-----------------------------------NGLCQSKSVEEAMRLFEEMRSKGV 257
           I                                   +GLCQ     +A ++   M S G+
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGL 377

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +P+  TY+ +++  CK G      +LL+ M    H P +VT
Sbjct: 378 KPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVPCVVT 418



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCT--PDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           LI+ +    G  D+A  +F  +     T   D Y +  LI      G I +A E F+   
Sbjct: 35  LIQIVVSRKGK-DSASAVFAAILETKGTQRSDIYVFSGLITAYLESGFIRDAIEFFRLTR 93

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                    T   ++  L + K  +     ++E+   G   +++ ++ LM   CK G   
Sbjct: 94  EHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMR 153

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A  +   +     RP++V+++TL++G  + G L E   +   M   G++PD   Y  +I
Sbjct: 154 LAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLI 213

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           +  C   K  EA    +EM+  G+ PN +T++       T++ G CK    + A ++Y  
Sbjct: 214 NGLCKESKMDEANELFNEMLDNGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQ 266

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           + ++  S D +TY++LI   CKKGD+ ++  ++DE+ +    PD+ T++ ++
Sbjct: 267 LLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLI 318


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 206/425 (48%), Gaps = 15/425 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  T + +I  L    Q + A    D++  +   + +  + ++  G  ++     A
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAA 183

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           ++   K+     +P    Y T++  + +   +  A+  +  M   GI   V + N LI  
Sbjct: 184 IKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYG 243

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  A  +  EM  +   P+ YTY  L++ LC+ GK+ EAK +   M      P
Sbjct: 244 FCI-VGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKP 302

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V+TY++L++G      V++A  +F  M   GV P+V TY+ L++G CK     +A+ L 
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P IVTYS+L++GLCK G++    +++D M+ +G   D   Y  +I   C  
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKN 422

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRN 400
           G    A    ++M    I PN  T+++       ++ GLCK     D    FQ  L+   
Sbjct: 423 GHLDRAIALFNKMKDQEIRPNIFTFTI-------LLDGLCKGGRLKDAQEVFQDLLT--- 472

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           +   ++  TY+ +I   CK+G + ++  ++ ++  +GC+P+  T+  ++ AL+ + +  +
Sbjct: 473 KGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDK 532

Query: 461 AAELL 465
           A +LL
Sbjct: 533 AEKLL 537



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 184/360 (51%), Gaps = 9/360 (2%)

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           V  K+ + G  P   +  T++  L  + Q+K A  F+  +   G Q    S   LI  +C
Sbjct: 116 VLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVC 175

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G   AA K  R++  R   PD   Y T+I+ +C+   + EA  LF EM  K  S  V
Sbjct: 176 K-IGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADV 234

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           VTY +LI G C    ++EA+ L  EM  K + PNV+TY+ L+D LCK G   +A  +L +
Sbjct: 235 VTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAV 294

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M+    +P+++TYSTL++G     ++++A  + + M L G+ PD   Y  +I+ FC    
Sbjct: 295 MLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKM 354

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
             EA N   EM    + P  +T+S       +++ GLCK+   +  + +   MR+R    
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYS-------SLIDGLCKSGRISYVWDLIDEMRDRGQPA 407

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D +TYSSLI   CK G + ++  + +++      P+  T++ ++  L    +++ A E+ 
Sbjct: 408 DVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVF 467



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 196/392 (50%), Gaps = 14/392 (3%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  I   + ++     A+ +  +++  G +P   +   ++       Q+   F     + 
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + G  P   +LN LIK LC   G +  A     ++  +G   +  +Y TLING+C++G  
Sbjct: 122 KRGYPPDTVTLNTLIKGLCL-KGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDT 180

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A +  ++++ +   P VV Y ++I+ +C+ + V EA  LF EM  KG+  +V TY++L
Sbjct: 181 RAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTL 240

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G C  G   +A+ LL  M+ K   PN+ TY+ L++ LCKEGK++EA  +L  M    +
Sbjct: 241 IYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACV 300

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KPD   Y  ++  +  + + ++A +  + M L G+TP+  T+++       ++ G CK  
Sbjct: 301 KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTI-------LINGFCKNK 353

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A  ++  M  +++    +TYSSLI   CK G I     ++DE+   G   D  T+S
Sbjct: 354 MVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYS 413

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +++  L     + +A     + L NK  + E+
Sbjct: 414 SLIDGLCKNGHLDRA-----IALFNKMKDQEI 440



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 147/260 (56%), Gaps = 1/260 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  V   M +   +P   +Y T++       ++K A   +  M  +G+ P V +  +LI
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 346

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CKN   +D A  +F+EM  +   P   TY +LI+GLC+ G+I    +L  EM  +  
Sbjct: 347 NGFCKNK-MVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQ 405

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
              V+TY+SLI+GLC++  ++ A+ LF +M+ + + PN+FT++ L+DGLCKGG    A E
Sbjct: 406 PADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQE 465

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           + Q +++K +  N+ TY+ ++NG CK+G L+EA+ +L +M+  G  P+A  +  II    
Sbjct: 466 VFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALF 525

Query: 343 DIGKYQEAANFLDEMVLGGI 362
              +  +A   L +M+  G+
Sbjct: 526 KKDENDKAEKLLRQMIARGL 545



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 155/314 (49%), Gaps = 9/314 (2%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P +   N ++ +  K       A  +   +  +G  PD  T   LIN  C +G+I     
Sbjct: 57  PPIIQFNKILDSFAKMK-HYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFS 115

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +  ++  +   P  VT  +LI GLC    V++A+   +++ ++G + N  +Y++L++G+C
Sbjct: 116 VLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVC 175

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G +  A++ L+ +  +  +P++V Y+T+++ +CK   + EA  +   M ++G+  D  
Sbjct: 176 KIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVV 235

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            Y  +I  FC +GK +EA   L+EMVL  I PN  T+       N +V  LCK      A
Sbjct: 236 TYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTY-------NILVDALCKEGKVKEA 288

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             V   M    +  D +TYS+L+  +    ++ K+  + + + L G  PD  T++ ++  
Sbjct: 289 KSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348

Query: 452 LWDRRKMRQAAELL 465
               + + +A  L 
Sbjct: 349 FCKNKMVDEALNLF 362



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 10/296 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A   F  M     TP    +  +++   ++     A  L   +E K   P ++T   
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C    +     +  ++  +G  P+  T ++L+ GLC  G   +A+     ++++ 
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            + N V+Y+TL+NG+CK G  + A++ L ++  +  KPD  +Y  II   C      EA 
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAY 219

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
               EM + GI+ + +T+       NT++ G C       A  +   M  ++I+ +  TY
Sbjct: 220 GLFSEMAVKGISADVVTY-------NTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTY 272

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCL-PDEGTWSAVMTALWDRRKMRQAAELL 465
           + L+   CK+G + K A+ V  ++L  C+ PD  T+S +M   +   ++++A  + 
Sbjct: 273 NILVDALCKEGKV-KEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 145/271 (53%), Gaps = 9/271 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A   F  M     +P ++ +  +++   + K    A+ L   +  KG++P++ T + L+
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           +  C  G  +    +L  ++ + + P+ VT +TL+ GLC +G++++A+   D++  QG +
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQ 161

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD- 387
            +   Y  +I+  C IG  + A  FL ++        RLT    + ++NT++  +CK   
Sbjct: 162 LNQVSYATLINGVCKIGDTRAAIKFLRKI------DGRLTKP-DVVMYNTIIDAMCKYQL 214

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            + A+ ++  M  + IS D +TY++LI  FC  G + ++  +++E+VL    P+  T++ 
Sbjct: 215 VSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           ++ AL    K+++A  +L + ++  CV+ +V
Sbjct: 275 LVDALCKEGKVKEAKSVLAV-MLKACVKPDV 304


>gi|218195588|gb|EEC78015.1| hypothetical protein OsI_17428 [Oryza sativa Indica Group]
          Length = 363

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 160/298 (53%), Gaps = 2/298 (0%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV-HRPLDA 104
           ++ + + +SLMI +L S  +F   E++L R   E    +++ F  + + YG V + P  A
Sbjct: 67  YKPNEALYSLMIDRLASCRRFSDVEEVLARARAESFRFSDEFFYRLIKMYGNVANHPQKA 126

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +     M  + C P+ K++  VL +LV + Q ++    Y     +G+       N+L+K 
Sbjct: 127 IETLFAMPGYNCWPSTKTFNYVLHMLVCKRQYEVVHEVYLSASRLGVTLDTCCFNILVKG 186

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC+  G  D A  +  EMP +GC P+  TY TL+N LC+ G++ +A EL + M+ +  + 
Sbjct: 187 LCQ-FGKFDDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIAA 245

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             V Y  LI+GLC+ + V EA  LF+ M  KG  PN  TY  L+DGL   G   +A  L+
Sbjct: 246 DAVVYNILISGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLLDGLLSSGKFVEAKGLV 305

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
            MM ++R RP   ++  L++GLC    L +A  +L +M  QG  P  G + K+++  C
Sbjct: 306 SMMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQGFVPRVGTWTKLVTSMC 363



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 41/292 (14%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LIK     +     A +    MP   C P + T+  +++ L    +     E++      
Sbjct: 112 LIKMYGNVANHPQKAIETLFAMPGYNCWPSTKTFNYVLHMLVCKRQYEVVHEVYLSASRL 171

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +     +  L+ GLCQ    ++A+ L  EM  +G  PNV TYS+LM+ LC+ G   +A
Sbjct: 172 GVTLDTCCFNILVKGLCQFGKFDDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKA 231

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            EL + M  +    + V Y+ L++GLC+E ++ EA  +   M  +G  P++G Y  ++  
Sbjct: 232 FELCERMQKEDIAADAVVYNILISGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLLDG 291

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN 400
               GK+ EA   +  M    + P   ++ L       ++ GLC                
Sbjct: 292 LLSSGKFVEAKGLVSMMRAERMRPGFSSFKL-------LIDGLC---------------- 328

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
              SV+ L  + L               ++ ++V  G +P  GTW+ ++T++
Sbjct: 329 ---SVNCLDDAHL---------------VLKQMVEQGFVPRVGTWTKLVTSM 362



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 90/188 (47%), Gaps = 8/188 (4%)

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A+E L  M      P+  T++ +L+ L  + + +   E+       G+  D   +  ++
Sbjct: 125 KAIETLFAMPGYNCWPSTKTFNYVLHMLVCKRQYEVVHEVYLSASRLGVTLDTCCFNILV 184

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
              C  GK+ +A + L EM   G  PN  T+S       T++  LC+    ++AF++   
Sbjct: 185 KGLCQFGKFDDAISLLYEMPKQGCVPNVTTYS-------TLMNFLCQHGQVDKAFELCER 237

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M+   I+ D++ Y+ LI+  C++  + ++  +   +V  GC P+ GT+  ++  L    K
Sbjct: 238 MQKEDIAADAVVYNILISGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLLDGLLSSGK 297

Query: 458 MRQAAELL 465
             +A  L+
Sbjct: 298 FVEAKGLV 305



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY-Q 348
           + ++PN   YS +++ L    +  +  E+L R + +  +     + ++I  + ++  + Q
Sbjct: 65  RDYKPNEALYSLMIDRLASCRRFSDVEEVLARARAESFRFSDEFFYRLIKMYGNVANHPQ 124

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVDS 407
           +A   L  M      P    W    +  N V+  L CK       +VYLS     +++D+
Sbjct: 125 KAIETLFAM------PGYNCWP-STKTFNYVLHMLVCKRQYEVVHEVYLSASRLGVTLDT 177

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             ++ L+   C+ G    +  ++ E+   GC+P+  T+S +M  L    ++ +A EL
Sbjct: 178 CCFNILVKGLCQFGKFDDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKAFEL 234


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/408 (29%), Positives = 201/408 (49%), Gaps = 12/408 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++ +    +V KAL   DS  A+   GF  D  T+  +I+ L      R A +L
Sbjct: 149 ITLTTIMKGLCINGEVRKALEFHDSVVAQ---GFLLDEVTYGTLINGLCKIGLTREAFEL 205

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L ++  +       I+  I  G  +     +A  ++  +   G +P   +Y  ++     
Sbjct: 206 LHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCG 265

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             Q +   R    M +  +   V + N+LI ALCK  G +  A  +   M  RG  PD  
Sbjct: 266 LGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCK-KGMLGKAHDMRNLMIERGQRPDLV 324

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           T+ TL++G C    + EA++LF        +P V +Y  LI G C++  ++EA+ LF +M
Sbjct: 325 TFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKM 384

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             K + PN+ TYSSL+DGLCK G  S A EL   +      PN++TY+ +L+ LCK   +
Sbjct: 385 NYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLV 444

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            +A+E+ + M  +GL P+   Y  +I+ +C   +  EA N  +EM    + P+ +T+   
Sbjct: 445 DKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTY--- 501

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
               N ++ GLCK+   + A++++  M +    VD +TY+ L   F K
Sbjct: 502 ----NCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSK 545



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 189/374 (50%), Gaps = 18/374 (4%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMREIGIQPC 154
           H P  A+ +  +M   G  P+    I  L+IL+        +  AF     + + G Q  
Sbjct: 93  HYP-TAISLSKQMGLRGITPS----IVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLN 147

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
             +L  ++K LC N G +  A +    +  +G   D  TYGTLINGLC++G   EA EL 
Sbjct: 148 AITLTTIMKGLCIN-GEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELL 206

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
            +ME +   P VV Y  +++GLC+   V EA  L+ ++  +G++P+VFTY+ L+ G C  
Sbjct: 207 HKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGL 266

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G   +   LL  M+ +    N+ TY+ L++ LCK+G L +A ++ + M  +G +PD   +
Sbjct: 267 GQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTF 326

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQ 393
             ++S +C      EA    D     GITP+   WS     +N ++ G CK +  + A  
Sbjct: 327 NTLMSGYCLYNDVVEARKLFDTFAECGITPD--VWS-----YNILIIGYCKNNRIDEALS 379

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++  M  + ++ + +TYSSLI   CK G I  +  +   +   G  P+  T++ ++ AL 
Sbjct: 380 LFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALC 439

Query: 454 DRRKMRQAAELLLL 467
             + + +A EL  L
Sbjct: 440 KIQLVDKAIELFNL 453



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 192/409 (46%), Gaps = 9/409 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ +  T + ++  L    + R A +  D V  +   + E  + ++  G  ++    +A
Sbjct: 143 GYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREA 202

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  KM+     P    Y  ++  L ++  +  A   Y  +   GI P V +   LI  
Sbjct: 203 FELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHG 262

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G      ++  +M +R    + YTY  LI+ LC+ G + +A ++   M  +   P
Sbjct: 263 FC-GLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRP 321

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VT+ +L++G C    V EA +LF+     G+ P+V++Y+ L+ G CK     +A+ L 
Sbjct: 322 DLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLF 381

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  K+  PNIVTYS+L++GLCK G++  A E+   +   G  P+   Y  ++   C I
Sbjct: 382 NKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKI 441

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
               +A    + M   G+TPN       +  +N ++ G CK+   + A  ++  M  R++
Sbjct: 442 QLVDKAIELFNLMFERGLTPN-------VSSYNILINGYCKSKRIDEAMNLFEEMHRRNL 494

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             DS+TY+ LI   CK G I  +  + + +   G   D  T++ +  A 
Sbjct: 495 VPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAF 543



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 154/304 (50%), Gaps = 9/304 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAE----DLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           G   D  T++ +I       Q+R       D++DR N      T +I +      G + +
Sbjct: 248 GIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDR-NVNLNVYTYNILIDALCKKGMLGK 306

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             D MR  + M E G  P   ++ T+++     N +  A + +    E GI P V S N+
Sbjct: 307 AHD-MR--NLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNI 363

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   CKN+  +D A  +F +M  +   P+  TY +LI+GLC+ G+I  A ELF  +   
Sbjct: 364 LIIGYCKNN-RIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDG 422

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             SP V+TY  +++ LC+ + V++A+ LF  M  +G+ PNV +Y+ L++G CK     +A
Sbjct: 423 GPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEA 482

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           M L + M  +   P+ VTY+ L++GLCK G++  A E+ + M   G   D   Y  +   
Sbjct: 483 MNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDA 542

Query: 341 FCDI 344
           F  I
Sbjct: 543 FSKI 546



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 157/314 (50%), Gaps = 9/314 (2%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V   N+++ ++ K       A  + ++M  RG TP   T   LIN  C LG +  A  
Sbjct: 76  PSVVEFNMILGSIVKMK-HYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFS 134

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +   +  +      +T T+++ GLC +  V +A+   + + ++G   +  TY +L++GLC
Sbjct: 135 VLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLC 194

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G + +A ELL  M  +  RPN+V Y+ +++GLCK+G + EA ++   +  +G+ PD  
Sbjct: 195 KIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVF 254

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            Y  +I  FC +G+++E    L +MV   +  N  T+       N ++  LCK     +A
Sbjct: 255 TYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTY-------NILIDALCKKGMLGKA 307

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             +   M  R    D +T+++L++ +C   D+ ++ ++ D     G  PD  +++ ++  
Sbjct: 308 HDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIG 367

Query: 452 LWDRRKMRQAAELL 465
                ++ +A  L 
Sbjct: 368 YCKNNRIDEALSLF 381



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 10/288 (3%)

Query: 167 KNSG--TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           K SG   +D A  +F  +      P    +  ++  + ++     A  L K+M  +  +P
Sbjct: 52  KKSGFDAIDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITP 111

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           ++VT + LIN  C    +  A  +   +  +G + N  T +++M GLC  G   +A+E  
Sbjct: 112 SIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFH 171

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             ++++    + VTY TL+NGLCK G  +EA E+L +M+ Q ++P+  +Y  I+   C  
Sbjct: 172 DSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKD 231

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSI 403
           G   EA +   ++V  GI P+  T++        ++ G C     R     L  M +R++
Sbjct: 232 GLVTEARDLYSDVVGRGIDPDVFTYT-------CLIHGFCGLGQWREVTRLLCDMVDRNV 284

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           +++  TY+ LI   CKKG + K+  + + ++  G  PD  T++ +M+ 
Sbjct: 285 NLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSG 332



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 6/218 (2%)

Query: 26  KDVNKALVIFDSATAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
            DV +A  +FD+    +A  G   D  +++++I      N+   A  L +++N +K    
Sbjct: 337 NDVVEARKLFDT----FAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPN 392

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              + S+  G  +  R   A  +F  + + G  P   +Y  +L  L +   +  A   + 
Sbjct: 393 IVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFN 452

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M E G+ P V+S N+LI   CK S  +D A  +F EM  R   PDS TY  LI+GLC+ 
Sbjct: 453 LMFERGLTPNVSSYNILINGYCK-SKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKS 511

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
           G+I  A ELF  M        V+TY  L +   + + V
Sbjct: 512 GRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHV 549


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 214/423 (50%), Gaps = 13/423 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D  T+++MI KL    +   A  LL R+  +     E  + ++ +G+    + + 
Sbjct: 288 NGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKGFFDESKMML 347

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +F++M   G +P+  +Y T++        +  A R    M+  G++P   + + ++ 
Sbjct: 348 AIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAML- 406

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
                +G++  AF ++  M   GC+PD YTY  L+ GLC+ G + +AKE    +     +
Sbjct: 407 -----NGSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSA 461

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
               T  +L+ G+C   S++EA+ L E+M +    P++ TY+ L+ G C+ G    A+ L
Sbjct: 462 IDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVIL 521

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL-QGLKPDAGLYGKIISCFC 342
           LQMM+ K   P+IVTY+ LL GL KEG+++ A  +   +   +G+  D   Y  +++ + 
Sbjct: 522 LQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNGYL 581

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
             GK  +    + +M    + PN  +++  I +H  + +G      +R+  +Y  M  + 
Sbjct: 582 KAGKLHKVEMTIYDMNQNKVYPNPASYN--ILMHGHIKKG----HLSRSIYLYKDMVRKG 635

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           I   ++TY  LI    K G I  + + +D++VL+G  PD  ++  ++ A  ++ +M  A 
Sbjct: 636 IKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDAL 695

Query: 463 ELL 465
           +L 
Sbjct: 696 QLF 698



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 202/412 (49%), Gaps = 28/412 (6%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI-FLSICRGYGRVHRPLDA 104
           F  D +T +++++ +      + A+ ++ ++  + C +   I + +I   Y +  R   A
Sbjct: 221 FPLDVTTCNIVLNSMCIEGNLKGAKHMIHKM--KSCSLPNVITYNTILHWYVKKGRFKAA 278

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M V + M++ G E    +Y  ++  L +  +   A+   + MR   + P   + N LIK 
Sbjct: 279 MCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKG 338

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
               S  M  A  IF EM  +G  P   TY TLI+G CR G I EA  +  EM+     P
Sbjct: 339 FFDESKMM-LAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKP 397

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           + VTY++++NG     SV EA  +++ M   G  P+V+TY +L+ GLCKGG   QA E +
Sbjct: 398 SEVTYSAMLNG-----SVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFM 452

Query: 285 QMMISKRHRPNIV---TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
             ++   H P+ +   T + LL G+C  G L EA+++ ++M      PD   Y  ++S F
Sbjct: 453 SCIV---HIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGF 509

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRA----FQVYLS 397
           C  GK   A   L  M+  G+ P+ +T++        +++GL K    +A    FQ  + 
Sbjct: 510 CRKGKIVPAVILLQMMLEKGLVPDIVTYT-------CLLKGLIKEGQVKAASYLFQEIIC 562

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
                +  D + Y+S++  + K G +HK    + ++  +   P+  +++ +M
Sbjct: 563 --KEGMYADCIAYNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILM 612



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 146/285 (51%), Gaps = 1/285 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G +  N T+ L+I  L        A   LD++  E        F  +   +    R  DA
Sbjct: 635 GIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDA 694

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++F+ MK     P+ K+Y  ++  L+ +N L+ +    R M E G++P       LI A
Sbjct: 695 LQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINA 754

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+  G ++ AF++  EM   G  P      +++ GL + GK+ E   +F  +      P
Sbjct: 755 KCR-FGDINGAFRLKEEMTALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVP 813

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T+ T+T+L++GLC+   + +A+ L   M S G++ +V TY+ L+ GLCK  C S A+EL 
Sbjct: 814 TIATFTTLMHGLCKEAKISDALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELY 873

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           + M SK  RPN+ TY+TL   +   G+  E  ++L+ ++ +GL P
Sbjct: 874 EEMKSKGLRPNVTTYTTLTEAIYGTGRTLEGEKLLNDIEDRGLVP 918



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 164/350 (46%), Gaps = 15/350 (4%)

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           C+  P  +  ++   V+E ++  A      M   G +    + N ++ AL +   +    
Sbjct: 151 CDSNPLVFDLLVNAYVKEKRVVDASMAILFMDNCGFKASAHACNAVLNALVEIGESKHVW 210

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS-PTVVTYTSLIN 234
           F   +E   R    D  T   ++N +C  G +  AK +  +M  K+CS P V+TY ++++
Sbjct: 211 F-FLKEGLVRKFPLDVTTCNIVLNSMCIEGNLKGAKHMIHKM--KSCSLPNVITYNTILH 267

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
              +    + AM + E+M   GVE +V+TY+ ++D LCK   S+ A  LL+ M      P
Sbjct: 268 WYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAP 327

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           +  TY+TL+ G   E K+  A+ I + M  QGLKP    Y  +I  +C  G   EA   L
Sbjct: 328 DECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVL 387

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
            EM + G+ P+ +T+S            +     + AF VY +M     S D  TY +L+
Sbjct: 388 YEMQVAGVKPSEVTYS-----------AMLNGSVHEAFSVYDNMEKYGCSPDVYTYRNLL 436

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
              CK G + ++   +  +V      D+ T +A++  + +   + +A +L
Sbjct: 437 RGLCKGGHLVQAKEFMSCIVHIPSAIDQKTLNALLLGICNHGSLDEALDL 486



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 179/422 (42%), Gaps = 50/422 (11%)

Query: 80  KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE------- 132
           +CD    +F  +   Y +  R +DA      M   G + +  +   VL  LVE       
Sbjct: 150 RCDSNPLVFDLLVNAYVKEKRVVDASMAILFMDNCGFKASAHACNAVLNALVEIGESKHV 209

Query: 133 ----------------------------ENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
                                       E  LK A      M+   + P V + N ++  
Sbjct: 210 WFFLKEGLVRKFPLDVTTCNIVLNSMCIEGNLKGAKHMIHKMKSCSL-PNVITYNTILHW 268

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G   AA  +  +M   G   D YTY  +I+ LC++ +   A  L K M     +P
Sbjct: 269 YVKK-GRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAP 327

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY +LI G      +  A+ +F EM  +G++P++ TY++L+DG C+ G   +A+ +L
Sbjct: 328 DECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVL 387

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M     +P+ VTYS +LN     G + EA  + D M+  G  PD   Y  ++   C  
Sbjct: 388 YEMQVAGVKPSEVTYSAMLN-----GSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKG 442

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G   +A  F+  +V        +  ++  +  N ++ G+C     + A  +   M   + 
Sbjct: 443 GHLVQAKEFMSCIV-------HIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINF 495

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             D  TY+ L++ FC+KG I  +  ++  ++  G +PD  T++ ++  L    +++ A+ 
Sbjct: 496 IPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASY 555

Query: 464 LL 465
           L 
Sbjct: 556 LF 557



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 166/358 (46%), Gaps = 3/358 (0%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +L+ +  E  V  A  +F     +   G   D   ++ M++  + A +    E  
Sbjct: 535 VTYTCLLKGLIKEGQVKAASYLFQEIICK--EGMYADCIAYNSMMNGYLKAGKLHKVEMT 592

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           +  +N+ K       +  +  G+ +      ++ ++  M   G +PT  +Y  ++  L +
Sbjct: 593 IYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSK 652

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
              +++A +F   M   GI P   S +VLI A  + S  M  A ++F  M     +P S 
Sbjct: 653 HGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKS-RMSDALQLFNCMKWLYMSPSSK 711

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY  +INGL R   +  + ++ ++M      P    Y +LIN  C+   +  A RL EEM
Sbjct: 712 TYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEM 771

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
            + G+ P     SS++ GL K G   + + +   +I     P I T++TL++GLCKE K+
Sbjct: 772 TALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKI 831

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            +A+ +   M+  GLK D   Y  +I+  C I    +A    +EM   G+ PN  T++
Sbjct: 832 SDALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYT 889



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 183/413 (44%), Gaps = 36/413 (8%)

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           T  I LS   G+ R  + + A+ +   M E G  P   +Y  +L  L++E Q+K A   +
Sbjct: 501 TYTILLS---GFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLF 557

Query: 144 RHM--REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
           + +  +E     C+A  N ++    K +G +        +M      P+  +Y  L++G 
Sbjct: 558 QEIICKEGMYADCIA-YNSMMNGYLK-AGKLHKVEMTIYDMNQNKVYPNPASYNILMHGH 615

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
            + G +  +  L+K+M  K   PT VTY  LI GL +   +E A++  ++M  +G+ P+ 
Sbjct: 616 IKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDR 675

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            ++  L++   +    S A++L   M      P+  TYS ++NGL ++  LQ + ++L  
Sbjct: 676 LSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRD 735

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------- 374
           M   GL+P    Y  +I+  C  G    A    +EM   GI P  +  S  +R       
Sbjct: 736 MVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALGIVPAEVADSSIVRGLSKCGK 795

Query: 375 ---------------------IHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSS 412
                                   T++ GLCK    + A  +   M +  + +D +TY+ 
Sbjct: 796 VEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDALHLKSLMESCGLKIDVVTYNV 855

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           LIT  CK   +  +  + +E+   G  P+  T++ +  A++   +  +  +LL
Sbjct: 856 LITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEAIYGTGRTLEGEKLL 908



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 131/262 (50%), Gaps = 1/262 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A++  DKM   G  P   S+  ++    E++++  A + +  M+ + + P   + + +I 
Sbjct: 659 AVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAMIN 718

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            L + +  +  +  + R+M   G  P    Y  LIN  CR G I  A  L +EM      
Sbjct: 719 GLIRKNW-LQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALGIV 777

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  V  +S++ GL +   VEE + +F  +   G+ P + T+++LM GLCK    S A+ L
Sbjct: 778 PAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDALHL 837

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             +M S   + ++VTY+ L+ GLCK   + +A+E+ + MK +GL+P+   Y  +      
Sbjct: 838 KSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEAIYG 897

Query: 344 IGKYQEAANFLDEMVLGGITPN 365
            G+  E    L+++   G+ P+
Sbjct: 898 TGRTLEGEKLLNDIEDRGLVPS 919



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 183/402 (45%), Gaps = 19/402 (4%)

Query: 87  IFLSICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
           + L IC      H  LD A+ + +KM      P   +Y  +L+    + ++  A    + 
Sbjct: 470 LLLGICN-----HGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQM 524

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCRL 204
           M E G+ P + +   L+K L K  G + AA  +F+E+    G   D   Y +++NG  + 
Sbjct: 525 MLEKGLVPDIVTYTCLLKGLIK-EGQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLKA 583

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           GK+++ +    +M      P   +Y  L++G  +   +  ++ L+++M  KG++P   TY
Sbjct: 584 GKLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTY 643

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
             L+ GL K G    A++ L  M+ +   P+ +++  L+N   ++ ++ +A+++ + MK 
Sbjct: 644 RLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKW 703

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
             + P +  Y  +I+        Q + + L +MV  G+ P    +         ++   C
Sbjct: 704 LYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYI-------ALINAKC 756

Query: 385 K-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
           +  D N AF++   M    I    +  SS++    K G + +   +   ++  G +P   
Sbjct: 757 RFGDINGAFRLKEEMTALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIA 816

Query: 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQDV 485
           T++ +M  L    K+  A  L L  LM  C   ++D+   +V
Sbjct: 817 TFTTLMHGLCKEAKISDA--LHLKSLMESC-GLKIDVVTYNV 855


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 193/368 (52%), Gaps = 23/368 (6%)

Query: 122 SYITVLAILVEE--NQLKLAFRFYRHM-REI--GIQPCVASLNVLIKALCKNSGTMDAAF 176
           SY TVLA L     + L+ A      M RE     +P   S   +++ LC +  T +A  
Sbjct: 85  SYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEA-V 143

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
            + R M   G   D  TYGTLI GLC   ++  A EL  EM      P VV Y+ L+ G 
Sbjct: 144 ALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGY 203

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+S   ++  ++FE+M  +G++P+V  ++ L+D LCK G + +A ++  MM+ +   PN+
Sbjct: 204 CRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNV 263

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           VTY+ L+N LCKEG ++EA+ +   M  +G+ PD   Y  +I+    + +  EA +FL+E
Sbjct: 264 VTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEE 323

Query: 357 MVLGG--ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
           M+ G   + P+ +T+       N+V+ GLCK     +A +V   M  R    + +TY+ L
Sbjct: 324 MIQGDTVVEPDVVTF-------NSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYL 376

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA---LWDRRKMRQAAELLLLELM 470
           I  F +   +  +  ++DEL + G  PD  T+S ++     +W+  +    AE  L  + 
Sbjct: 377 IGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDR----AEKFLCTMR 432

Query: 471 NKCVEAEV 478
            + ++AE+
Sbjct: 433 QRGIKAEL 440



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 204/410 (49%), Gaps = 12/410 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G R D  T+  +I  L  A++   A +LLD +          ++  + RGY R  R  
Sbjct: 151 ASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQ 210

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           D  +VF+ M   G +P    +  ++  L +E +   A +    M + G++P V + NVLI
Sbjct: 211 DVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLI 270

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETK 220
            +LCK  G++  A  + +EM ++G  PD  TY TLI GL  + ++ EA    +EM     
Sbjct: 271 NSLCKE-GSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDT 329

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P VVT+ S+I+GLC+   + +A+++ E M  +G   N+ TY+ L+ G  +      A
Sbjct: 330 VVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMA 389

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           M L+  +      P+  TYS L+NG  K  ++  A + L  M+ +G+K +   Y  +++ 
Sbjct: 390 MNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAA 449

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
            C  G  + A    +EM             L    ++T++ G CK+ D     Q+   M 
Sbjct: 450 MCQQGMMERAMGLFNEM--------DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDML 501

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           +  ++ D++TYS LI  + K GD+ ++ R++ ++   G +PD   + +++
Sbjct: 502 DEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLI 551



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 194/396 (48%), Gaps = 45/396 (11%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++ RG     R  +A+ +   M+  G      +Y T++  L + ++L  A      M 
Sbjct: 126 YTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMC 185

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
             G+QP V   + L++  C+ SG      K+F +M  RG  PD   +  LI+ LC+ GK 
Sbjct: 186 GSGVQPNVVVYSCLLRGYCR-SGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKT 244

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A ++   M  +   P VVTY  LIN LC+  SV EA+ L +EM  KGV P+V TY++L
Sbjct: 245 GKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTL 304

Query: 268 MDGLCKGGCSSQAMELLQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           + GL       +AM  L+ MI       P++VT++++++GLCK G++ +AV++ + M  +
Sbjct: 305 IAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAER 364

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G   +   Y  +I  F  + K + A N +DE+ + G+ P+  T+S+       ++ G  K
Sbjct: 365 GCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSI-------LINGFSK 417

Query: 386 T-DPNRAFQVYLSMRNRSI----------------------------------SVDSLTY 410
             + +RA +   +MR R I                                   +D++ Y
Sbjct: 418 MWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAY 477

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
           S++I   CK GD+    +++ +++ +G  PD  T+S
Sbjct: 478 STMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYS 513



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 151/283 (53%), Gaps = 15/283 (5%)

Query: 190 DSYTYGTLINGLCRLG--KIYEAKELFKEMETK---ACSPTVVTYTSLINGLCQSKSVEE 244
           D+ +Y T++  LCR G   + +A+ L  +M  +   A  P  V+YT+++ GLC S+   E
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A+ L   M++ GV  +V TY +L+ GLC       A+ELL  M     +PN+V YS LL 
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLR 201

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G C+ G+ Q+  ++ + M  +G+KPD  ++  +I   C  GK  +AA   D MV  G+ P
Sbjct: 202 GYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEP 261

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           N +T+       N ++  LCK    R A  +   M ++ ++ D +TY++LI       ++
Sbjct: 262 NVVTY-------NVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEM 314

Query: 424 HKSARIVDELVLDGCL--PDEGTWSAVMTALWDRRKMRQAAEL 464
            ++   ++E++    +  PD  T+++V+  L    +M QA ++
Sbjct: 315 DEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKV 357



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
           G   D  T++ +I+ L    +   A   L+ + +    +  D+  F S+  G  ++ R  
Sbjct: 293 GVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMT 352

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A++V + M E GC     +Y  ++   +  +++K+A      +   G++P   + ++LI
Sbjct: 353 QAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILI 412

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K    +D A K    M  RG   + + Y  L+  +C+ G +  A  LF EM+ K C
Sbjct: 413 NGFSK-MWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMD-KNC 470

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               + Y+++I+G C+S  ++   +L ++M  +G+ P+  TYS L++   K G   +A  
Sbjct: 471 GLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAER 530

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +L+ M +    P++  + +L+ G   EG+  + ++++  M+ + +  D  +   II
Sbjct: 531 VLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAKNVAFDPKIISTII 586


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/492 (27%), Positives = 234/492 (47%), Gaps = 49/492 (9%)

Query: 13  ITSAQVLQLIRAEK--DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           ++  QV  ++RA+   DV +A   F  A  ++   +RH    F  M+S L +     PA 
Sbjct: 90  LSPPQVRAVLRAQARGDVRRAFEFFRWADRQWR--YRHAPEVFDEMLSLLSNTRLHDPAR 147

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            ++  + +       + F  +   Y R  +   AMRV   M++ GC P        + +L
Sbjct: 148 RVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVL 207

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V   ++  A  F   MR +G++P V + N LIK LC     +DA  ++   M   GC PD
Sbjct: 208 VVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDA-MEMIGVMLQNGCPPD 266

Query: 191 --SY----------------------------------TYGTLINGLCRLGKIYEAKELF 214
             SY                                  TY  LI+GL + G   EA E  
Sbjct: 267 KISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFL 326

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           +E E K      V Y+++++  C +  + EA  +  EM SKG +P+V TYS+++DG C+ 
Sbjct: 327 RESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRI 386

Query: 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           G   QA ++++ M     +PN VT++ LLNGLCK GK  EA E+L++ + +   P    Y
Sbjct: 387 GELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITY 446

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQ 393
             ++  F   GK +E+ + + +M+  G  P   T  +++ IH      LCK   P  A  
Sbjct: 447 SVVMHGFRREGKLKESCDVVVQMLQKGFFPT--TVEINLLIH-----ALCKDRKPAEAKD 499

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
                +++  +++ + ++++I  F ++GD+  +  ++D++ L    PD  T++ V+ AL 
Sbjct: 500 FMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALG 559

Query: 454 DRRKMRQAAELL 465
            + ++++A  L+
Sbjct: 560 KKGRLKEATGLV 571



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 225/450 (50%), Gaps = 12/450 (2%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS 62
           V+ M +   +  + Q  QL+ +     K             +G   D S  ++ ++ LV 
Sbjct: 150 VRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVV 209

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           A +   A +  +R+ +    +  D++   C  +G     R +DAM +   M + GC P  
Sbjct: 210 AGRVDKALEFAERMRR--VGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDK 267

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMR-EIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
            SY TV++ L +E +++      + MR + G+ P   + NVLI  L K+ G  D A +  
Sbjct: 268 ISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKH-GHADEALEFL 326

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           RE   +    D   Y  +++  C  G++ EAKE+  EM +K C P VVTY+++++G C+ 
Sbjct: 327 RESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRI 386

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
             +++A ++ + M     +PN  T+++L++GLCK G +S+A ELL     +   P+ +TY
Sbjct: 387 GELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITY 446

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           S +++G  +EGKL+E+ +++ +M  +G  P       +I   C   K  EA +F+++   
Sbjct: 447 SVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQS 506

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
            G T N + ++    IH    QG  ++  +    +YLS R+  +   ++   +L     K
Sbjct: 507 KGCTINVVNFT--TVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDAL----GK 560

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           KG + ++  +V++++  G LP   T+  V+
Sbjct: 561 KGRLKEATGLVEKMLNRGVLPTPVTYRTVI 590



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 178/387 (45%), Gaps = 12/387 (3%)

Query: 96  GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           G V R  +  R  D+   +     P+ +  +L++L        A R  R M   G++   
Sbjct: 105 GDVRRAFEFFRWADRQWRY--RHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGT 162

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
                L+ +  + +G + +A ++   M   GC PD       +N L   G++ +A E  +
Sbjct: 163 EQFAQLMLSYSR-AGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAE 221

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
            M      P V TY  LI GLC ++ V +AM +   M   G  P+  +Y ++M  LCK  
Sbjct: 222 RMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEK 281

Query: 276 CSSQAMELLQMMISKRHR-PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
              +   LLQ M +     P+ VTY+ L++GL K G   EA+E L   + +  + D   Y
Sbjct: 282 RVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGY 341

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393
             I+  FC  G+  EA   + EM+  G  P+ +T+S       TVV G C+  + ++A +
Sbjct: 342 SAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYS-------TVVDGFCRIGELDQARK 394

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           +   M       +++T+++L+   CK G   ++  ++++   +   P + T+S VM    
Sbjct: 395 MMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFR 454

Query: 454 DRRKMRQAAELLLLELMNKCVEAEVDI 480
              K++++ ++++  L        V+I
Sbjct: 455 REGKLKESCDVVVQMLQKGFFPTTVEI 481



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 190/416 (45%), Gaps = 16/416 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC----DITEDIFLSICRGYGRVH 99
           NG   D  ++  ++S L    +      LL R+  +       +T ++ +     +G   
Sbjct: 261 NGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHAD 320

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
             L+ +R  +  K F  +     Y  ++       ++  A      M   G QP V + +
Sbjct: 321 EALEFLRESEG-KRFRVDEV--GYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYS 377

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
            ++   C+  G +D A K+ + M    C P++ T+  L+NGLC++GK  EA EL  + E 
Sbjct: 378 TVVDGFCR-IGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEE 436

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +  +P+ +TY+ +++G  +   ++E+  +  +M  KG  P     + L+  LCK    ++
Sbjct: 437 EWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAE 496

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A + ++   SK    N+V ++T+++G  ++G L+ A+ ++D M L    PD   Y  ++ 
Sbjct: 497 AKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVD 556

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMR 399
                G+ +EA   +++M+  G+ P  +T+     IH    +G  +   N   ++     
Sbjct: 557 ALGKKGRLKEATGLVEKMLNRGVLPTPVTY--RTVIHRYCEKGNLEDLLNLLEKMLARQE 614

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            +S       Y+ ++   C  G ++++  ++ +++    + D  T   +M +  +R
Sbjct: 615 MKS------AYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCHILMESFLNR 664



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 149/324 (45%), Gaps = 5/324 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G + D  T+S ++       +   A  ++  + K  C        ++  G  +V +  
Sbjct: 366 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 425

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  + +K +E    P+  +Y  V+     E +LK +      M + G  P    +N+LI
Sbjct: 426 EAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLI 485

Query: 163 KALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
            ALCK+    +A  K F E   ++GCT +   + T+I+G  R G +  A  L  +M    
Sbjct: 486 HALCKDRKPAEA--KDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSN 543

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P VVTYT +++ L +   ++EA  L E+M ++GV P   TY +++   C+ G     +
Sbjct: 544 RHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDLL 603

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ M++++   +   Y+ ++  LC  GKL EA  +L ++       DA     ++  F
Sbjct: 604 NLLEKMLARQEMKS--AYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCHILMESF 661

Query: 342 CDIGKYQEAANFLDEMVLGGITPN 365
            + G   +A N    M    + P+
Sbjct: 662 LNRGLGLQAYNVACRMFRRNLIPD 685


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 205/417 (49%), Gaps = 9/417 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D +T++ +IS      +   AE+LL+   K      +  +  +   Y +  + L 
Sbjct: 339 NGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLR 398

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F  M E G      +Y  ++  LV   ++ +A      M E G+ P     NVL+ 
Sbjct: 399 AFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMN 458

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G + AA  +  EM ++  + D++   TL++G  R GK+ EAK+LF+    K   
Sbjct: 459 GLCK-KGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMD 517

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VV Y ++I G C+   + +A+   + M+     P+ FTYS+++DG  K      A++L
Sbjct: 518 PGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKL 577

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M+ ++ +PN+VTY++L+NG C+ G    A +  + M+  GLKP+   Y  +I CFC 
Sbjct: 578 FGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCK 637

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN--- 400
            GK  +A +F + M+L    PN +T++  I      +        N + ++  S+     
Sbjct: 638 EGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANESLEIKASLMMDFF 697

Query: 401 RSISVDSL-----TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           R++  D        Y+S++ C C    ++ + ++ D++   G  PD  +++A++  L
Sbjct: 698 RTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYGL 754



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 206/459 (44%), Gaps = 30/459 (6%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           DN +  +M+  L    +      L++    + C      + ++  GY +      A  +F
Sbjct: 204 DNYSVCIMVRGLCKERKVEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLF 263

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            ++K  G  PT ++Y  ++  L ++   K        M+E G+   V   N ++ A  K+
Sbjct: 264 KELKMKGFLPTTETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKH 323

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
              ++   K  R +   GC PD  TY TLI+G CR GK++EA+EL +    +  SP  ++
Sbjct: 324 GCKIEVG-KTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLS 382

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT LI+  C+      A  LF  M  KG   ++  Y +L+ GL   G    A+ +   M+
Sbjct: 383 YTPLIHVYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMV 442

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   P+   Y+ L+NGLCK+G+L  A  +L  M  Q L  DA +   ++  F   GK  
Sbjct: 443 ERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLD 502

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVV 380
           EA    +  +  G+ P  + ++  I+                             ++T++
Sbjct: 503 EAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTII 562

Query: 381 QGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            G  K  D + A +++  M  +    + +TY+SLI  FC+ GD  ++ +  +E+   G  
Sbjct: 563 DGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLK 622

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           P+  T++ ++       K+ +A     L L+N+C+  +V
Sbjct: 623 PNVVTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDV 661



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 209/450 (46%), Gaps = 48/450 (10%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +D    L +F+ A+         D  + S ++  L     F   E+LL+ +  +    T 
Sbjct: 75  RDPGLGLKLFEWASKRSDFNDLLDGFSCSSLLKLLARCRVFVEVENLLETMKCKDLAPTR 134

Query: 86  DIFLSICRGY---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           +    +   Y   G V+R L+   +   +  +   P   +   +L  L+++ ++++A + 
Sbjct: 135 EALSFVVGAYVDSGLVNRALELYHIAYDIHNY--LPDVIACNALLNALIQQKKVEIARKV 192

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           Y  M +        S+ ++++ LCK    ++   K+  +   +GC P+   Y TL++G  
Sbjct: 193 YEEMVKRDGCWDNYSVCIMVRGLCKER-KVEEGRKLINDRWGKGCIPNIVFYNTLVDGYW 251

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           + G +  A  LFKE++ K   PT  TY  +INGLC+  + +    L  EM+ +GV+ NV 
Sbjct: 252 KRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQ 311

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
            Y+S++D   K GC  +  + L+ +      P+I TY+TL++G C++GK+ EA E+L+  
Sbjct: 312 VYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHA 371

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +GL P+   Y  +I  +C                                      QG
Sbjct: 372 IKRGLSPNKLSYTPLIHVYCK-------------------------------------QG 394

Query: 383 LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
            C     RAF +++ M  +   +D + Y +L+      G++  +  + D++V  G LPD 
Sbjct: 395 KCL----RAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDA 450

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNK 472
             ++ +M  L  + ++  AA+LLL+E++++
Sbjct: 451 NVYNVLMNGLCKKGRL-SAAKLLLVEMLHQ 479



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 157/372 (42%), Gaps = 50/372 (13%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           K L  FD        G   D   +  ++  LV+A +   A  + D++ +       +++ 
Sbjct: 395 KCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYN 454

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            +  G  +  R   A  +  +M             T++   +   +L  A + +      
Sbjct: 455 VLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAK 514

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G+ P V   N +IK  CK  G M+ A    + M +   +PD +TY T+I+G  +   ++ 
Sbjct: 515 GMDPGVVGYNAMIKGYCK-FGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHN 573

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +LF +M  + C P VVTYTSLING C++     A + FEEMRS G++PNV TY+ L+ 
Sbjct: 574 ALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIG 633

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL----------------------- 306
             CK G  S+A    ++M+  R  PN VT++ L+NGL                       
Sbjct: 634 CFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANESLEIKASLM 693

Query: 307 --------------------------CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
                                     C    +  A+++ D+M  +G+ PD   +  ++  
Sbjct: 694 MDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYG 753

Query: 341 FCDIGKYQEAAN 352
            C  G+ +E  N
Sbjct: 754 LCLEGRSKEWKN 765



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 120/288 (41%), Gaps = 51/288 (17%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++ +GY +     DA+    +MK+    P   +Y T++   V++N L  A + +  M + 
Sbjct: 525 AMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQ 584

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
             +P V +   LI   C+ +G    A K F EM + G  P+  TY  LI   C+ GKI +
Sbjct: 585 KCKPNVVTYTSLINGFCR-TGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGKISK 643

Query: 210 AKELFKEMETKACSPTVVTYTSLINGL--------------------------------- 236
           A   F+ M    C P  VT+  LINGL                                 
Sbjct: 644 ACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANESLEIKASLMMDFFRTMISD 703

Query: 237 ----------------CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                           C  K V  A++L ++M  KG+ P+  ++++L+ GLC  G S + 
Sbjct: 704 GWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYGLCLEGRSKEW 763

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
              +   +++      V YS  LN    +G   EA ++   + L+G+K
Sbjct: 764 KNTISCKLNEWELQIAVKYSQKLNPFLPKGLTSEASKVFHTL-LEGVK 810


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 185/348 (53%), Gaps = 13/348 (3%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPLDA 104
           R +  T++ +I+   +  + + A +++ R  +E+  I  D   + ++  G+ ++ R  DA
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVM-REMRERGGIAPDKYTYATLISGWCKIGRMEDA 202

Query: 105 MRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            +VFD+M   G   P+   Y  ++    +  +L +A ++   M + G+   VA+ N+L+ 
Sbjct: 203 AKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVH 262

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL  +    DA + +  EM   G +PD +TY  LING C+ G   +A E+F+EM  K   
Sbjct: 263 ALFMDGRASDA-YAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVR 321

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            T VTYTSLI    +   V+E  RLF+    KG+ P+V  Y++L++  C GG   +A E+
Sbjct: 322 ATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEI 381

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M  KR  P+ VTY+TL+ G C  G+L EA  ++D M  +G++PD GL        C 
Sbjct: 382 MAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLGL--------CK 433

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRA 391
            G+  +A N + EMV  GITP+  T+   I    TV + +   D  +A
Sbjct: 434 NGQGDDAENLMKEMVGKGITPDDSTYISLIEGLTTVDEQMSAADAAKA 481



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 158/295 (53%), Gaps = 11/295 (3%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEA 210
           +P   + N +I   C   G + AA ++ REM  RG   PD YTY TLI+G C++G++ +A
Sbjct: 144 RPNAVTYNTVIAGFCAR-GRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDA 202

Query: 211 KELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            ++F EM T+   +P+ V Y +LI G C    ++ A++  E+M  +GV   V TY+ L+ 
Sbjct: 203 AKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVH 262

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            L   G +S A  +L+ M      P++ TY+ L+NG CKEG  ++A+E+ + M  +G++ 
Sbjct: 263 ALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRA 322

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDP 388
            A  Y  +I  F   G+ QE        V  GI P+       + ++N ++   C   D 
Sbjct: 323 TAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPD-------VVMYNALINSHCAGGDM 375

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
            RAF++   M  + I  D +TY++LI  FC  G + ++  ++DE+   G  PD G
Sbjct: 376 ERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLG 430



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 194/418 (46%), Gaps = 31/418 (7%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           ++   ++S L SA  F    D+  R+    C  T +I L      G+  R L+ +R   +
Sbjct: 86  ASLHPLLSSLPSAPAFALFADIY-RLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR 144

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-GIQPCVASLNVLIKALCKNS 169
                  P   +Y TV+A      +++ A    R MRE  GI P   +   LI   CK  
Sbjct: 145 -------PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCK-I 196

Query: 170 GTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           G M+ A K+F EM  +G   P +  Y  LI G C  GK+  A +  ++M  +  + TV T
Sbjct: 197 GRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVAT 256

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y  L++ L       +A  + EEM+  G+ P+VFTY+ L++G CK G   +A+E+ + M 
Sbjct: 257 YNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMS 316

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K  R   VTY++L+    ++G++QE   +      +G++PD  +Y  +I+  C  G  +
Sbjct: 317 RKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDME 376

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC---KTDPNRAFQVYLSMRNRSISV 405
            A   + EM    I P+ +T+       NT+++G C   + D  R   +   M  R I  
Sbjct: 377 RAFEIMAEMEKKRIPPDDVTY-------NTLIRGFCLLGRLDEARG--LIDEMTKRGIQP 427

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           D           CK G    +  ++ E+V  G  PD+ T+ +++  L    +   AA+
Sbjct: 428 D--------LGLCKNGQGDDAENLMKEMVGKGITPDDSTYISLIEGLTTVDEQMSAAD 477



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 164/330 (49%), Gaps = 19/330 (5%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           + RFY  ++ + +   VASL+ L+ +L         AF +F ++        + T+  ++
Sbjct: 69  SLRFYAQLKSLSVPIPVASLHPLLSSLPSAP-----AFALFADIYRLRLPLCTTTFNIML 123

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG-V 257
             LC  GK   A EL ++M      P  VTY ++I G C    V+ A+ +  EMR +G +
Sbjct: 124 RHLCATGKPVRALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGI 179

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAV 316
            P+ +TY++L+ G CK G    A ++   M+++    P+ V Y+ L+ G C  GKL  A+
Sbjct: 180 APDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVAL 239

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           +  + M  +G+      Y  ++      G+  +A   L+EM   G++P+  T+       
Sbjct: 240 QYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTY------- 292

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           N ++ G CK  +  +A +V+  M  + +   ++TY+SLI  F +KG + ++ R+    V 
Sbjct: 293 NILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVK 352

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            G  PD   ++A++ +      M +A E++
Sbjct: 353 KGIRPDVVMYNALINSHCAGGDMERAFEIM 382


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 222/475 (46%), Gaps = 49/475 (10%)

Query: 16  AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR 75
           + V++++   K V +A+ IF                 ++ MI  L+   Q+     L + 
Sbjct: 130 SDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQ---AYNSMIIMLMHEGQYEKVHQLYNE 186

Query: 76  VNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           ++ E  C      + ++   + ++ R   A+++ ++MKE G +PT K Y  ++A+  + N
Sbjct: 187 MSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFN 246

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
               A   +  MR    +P V +   LI+ L K +G +D A+  F EM   GC PD+   
Sbjct: 247 DAHGALSLFEEMRHQYCRPDVFTYTELIRGLGK-AGRIDEAYHFFCEMQREGCRPDTVFM 305

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRLFEEMR 253
             +IN L + G++ +A +LF+EMET  C P+VVTY ++I  L +SKS   E    FE M+
Sbjct: 306 NNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMK 365

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG-------- 305
             G+ P+ FTYS L+DG CK     +AM LL+ M  K   P    Y +L++         
Sbjct: 366 ESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 425

Query: 306 ---------------------------LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
                                      L K G+L +A+ + D M   G  PD   Y  ++
Sbjct: 426 LACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALM 485

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
           S     G   EA + +  M   G  P+       I  +N ++ GL KT  P+RA ++  +
Sbjct: 486 SGLARTGMLDEALSTMRRMQEHGCIPD-------INSYNIILNGLAKTGGPHRAMEMLSN 538

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           M+  ++  D ++Y++++      G   ++++++ E+   G   D  T+S+++ A+
Sbjct: 539 MKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAI 593



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 168/378 (44%), Gaps = 42/378 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G +     ++++I+     N    A  L + +  + C      +  + RG G+  R  +A
Sbjct: 227 GMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEA 286

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
              F +M+  GC P       ++  L +  +L  A + ++ M  +   P V + N +IKA
Sbjct: 287 YHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKA 346

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L ++          F  M   G +P S+TY  LI+G C+  ++ +A  L +EM+ K   P
Sbjct: 347 LFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 406

Query: 225 TVVTYTSLINGLCQSK-----------------------------------SVEEAMRLF 249
               Y SLI+ L ++K                                    +++A+ +F
Sbjct: 407 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMF 466

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +EM   G  P+V+ Y++LM GL + G   +A+  ++ M      P+I +Y+ +LNGL K 
Sbjct: 467 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 526

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G    A+E+L  MK   ++PD   Y  ++      G ++EA+  + EM   G   + +T+
Sbjct: 527 GGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITY 586

Query: 370 SLHIRIHNTVVQGLCKTD 387
           S       ++++ + K D
Sbjct: 587 S-------SILEAIGKVD 597



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 205/497 (41%), Gaps = 95/497 (19%)

Query: 6   MFKWST-----------KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW             ++    V ++++ +  VN  +  F  A       + HD ST+ 
Sbjct: 37  IFKWGPDAEKALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKR--RNYEHDTSTYM 94

Query: 55  LMISKLVSANQFRPAEDLL-DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
            +I  L    Q+     ++ + V    C +T      + R  G       A+ +F ++K 
Sbjct: 95  ALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKT 154

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
             C+P  ++Y +++ +L+ E Q                                     +
Sbjct: 155 RKCQPIAQAYNSMIIMLMHEGQY------------------------------------E 178

Query: 174 AAFKIFREMPNRG-CTPDSYTYGTLINGLCRLG---------------------KIYE-- 209
              +++ EM   G C PD+ TY  LI+  C+LG                     KIY   
Sbjct: 179 KVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTML 238

Query: 210 ------------AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
                       A  LF+EM  + C P V TYT LI GL ++  ++EA   F EM+ +G 
Sbjct: 239 IALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGC 298

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK-EGKLQEAV 316
            P+    +++++ L K G    AM+L Q M + R  P++VTY+T++  L + + +  E  
Sbjct: 299 RPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVP 358

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
              +RMK  G+ P +  Y  +I  FC   + ++A   L+EM   G  P    +       
Sbjct: 359 SWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYC------ 412

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            +++  L K    + A +++  ++    S  +  Y+ +I    K G +  +  + DE+  
Sbjct: 413 -SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNK 471

Query: 436 DGCLPDEGTWSAVMTAL 452
            GC PD   ++A+M+ L
Sbjct: 472 LGCAPDVYAYNALMSGL 488



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 1/157 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            +++MI  L  A +   A ++ D +NK  C      + ++  G  R     +A+    +M
Sbjct: 445 VYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRM 504

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +E GC P   SY  +L  L +      A     +M++  ++P V S N ++ AL  ++G 
Sbjct: 505 QEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGAL-SHAGM 563

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            + A K+ +EM   G   D  TY +++  + ++   Y
Sbjct: 564 FEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDHEY 600



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI---TPNRLTWSLHIRIHNTV 379
           K +  + D   Y  +I C   + +Y E    + EMV   I   TP  L+  + +  +  +
Sbjct: 82  KRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKM 141

Query: 380 VQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-C 438
           V+        +A  ++  ++ R     +  Y+S+I     +G   K  ++ +E+  +G C
Sbjct: 142 VR--------QAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHC 193

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
            PD  T+SA+++A     +   A +LL
Sbjct: 194 FPDTVTYSALISAFCKLGRRDSAIQLL 220


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 193/428 (45%), Gaps = 66/428 (15%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+  F++M      P+   +  +L  + +             M   GI P + +L++LI 
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILIN 104

Query: 164 ALCK-NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           + C  N G +  A  +F +M   G  PD  TYGTLINGLC++G    A  L   M  K C
Sbjct: 105 SFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNC 164

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P V  Y ++I+ LC+ + V EA  LF EM +KG+ P++FTY+SL+  LC          
Sbjct: 165 QPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVAT 224

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG---------------- 326
           LL  M+  +  P++V+++T+++ LCKEGK+ EA +++D+M  +G                
Sbjct: 225 LLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGY 284

Query: 327 --------------------LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
                               L PD   Y  +I   C + + Q+A     EMV     PN 
Sbjct: 285 CKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNL 344

Query: 367 LTWSL----------------------------HIRIHNTVVQGLCKT-DPNRAFQVYLS 397
           +T+ +                             I+++N  + G+C+  +   A  ++ +
Sbjct: 345 VTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSN 404

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           + ++ +  D  TYS +I   C++G + +++++  E+  +GC  +   ++ +        +
Sbjct: 405 LSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNE 464

Query: 458 MRQAAELL 465
             +A +LL
Sbjct: 465 TSRAIQLL 472



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 206/430 (47%), Gaps = 30/430 (6%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           + +AL +FD    E   GFR D  T+  +I+ L        A  LL  + ++ C      
Sbjct: 114 IGEALHLFDKMIGE---GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFA 170

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + +I     +  +  +A  +F +M   G  P   +Y +++  L    + K        M 
Sbjct: 171 YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMV 230

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGK 206
           +  I P V S N ++ ALCK  G +  A  +  +M  RG C P+  +Y TLING C++ +
Sbjct: 231 DSKIMPDVVSFNTVVDALCK-EGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQR 289

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           I +A  LF EM  +   P  VTY++LI+GLC  + +++A+ LF EM +    PN+ TY  
Sbjct: 290 IDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRI 349

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+D LCK    ++AM LL+ +      P+I   +  ++G+C+ G+L+ A ++   +  +G
Sbjct: 350 LLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKG 409

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L+PD   Y  +I+  C  G   EA+    EM   G T N         I+NT+ +G  + 
Sbjct: 410 LQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGC-------IYNTITRGFLRN 462

Query: 387 D-PNRAFQVYLSMRNRSISVDSLTYSSLITC----------------FCK-KGDIHKSAR 428
           +  +RA Q+   M  R  S D+ T +  +                  FCK K  I+++  
Sbjct: 463 NETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILRDFCKQKSWIYENVM 522

Query: 429 IVDELVLDGC 438
           ++ E++L  C
Sbjct: 523 VLQEIILVNC 532



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 166/336 (49%), Gaps = 12/336 (3%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N +  A   +  M  +   P     N L+ ++ K          +  +M + G  P+ YT
Sbjct: 40  NTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHH-STLLSLSHQMDSFGIPPNIYT 98

Query: 194 YGTLINGLCRL--GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
              LIN  C L  GKI EA  LF +M  +   P VVTY +LINGLC+  +   A+RL   
Sbjct: 99  LHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGS 158

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M  K  +PNVF Y++++D LCK    ++A  L   M++K   P+I TY++L++ LC   +
Sbjct: 159 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCE 218

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL-GGITPNRLTWS 370
            +    +L+ M    + PD   +  ++   C  GK  EA + +D+M+  GG  PN +++ 
Sbjct: 219 WKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISY- 277

Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 NT++ G CK    ++A  ++  M  + +  D++TYS+LI   C    +  +  +
Sbjct: 278 ------NTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIAL 331

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             E+V    +P+  T+  ++  L   R + +A  LL
Sbjct: 332 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALL 367


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 202/418 (48%), Gaps = 20/418 (4%)

Query: 47  RHDNSTFSL--MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           RH  S FS+  ++S LV+A +   AE       + +       F  +  G  +  +   A
Sbjct: 145 RHRPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKA 204

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY------RHMREIGIQPCVASL 158
             V   ++ +G  P+  +Y T++    +  +   A R Y      + M E GI P   + 
Sbjct: 205 GDVAKDIRAWGLAPSVVTYNTIIDGYCKRGR---AGRMYHVDALLKEMVEAGISPNEVTF 261

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           NVL+   CK+S T  AA ++F EM  +G      TY  L+ GLC  GK+ E  +L  EM+
Sbjct: 262 NVLVNGYCKDSNTA-AAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMK 320

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                P + T  S++NG C+   + +A    + M  K V+PNV TY+ L+DG  +     
Sbjct: 321 DLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMK 380

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A+ + + M  K  RPN   Y+ L+ G  + G  +    +LD M+++G++ D   Y  +I
Sbjct: 381 DALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLI 440

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLS 397
              C  G+ ++A   LDEM++ G+ P  LT+       NT++ G C K +   A+++   
Sbjct: 441 GALCVKGEVRKAVKLLDEMLMVGLEPVHLTY-------NTIINGYCEKGNIKSAYEIRTR 493

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
           M       + +TY+  I C C+ G + ++  +++E++  G +P+  T+  +   + ++
Sbjct: 494 MEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGMMEK 551



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 173/380 (45%), Gaps = 68/380 (17%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
            P +A L VL  A          AF +  +   R   P +++   L++ L    ++  A+
Sbjct: 112 SPLIADLLVLALASASQPLASYEAFLLAGDAHPRH-RPSAFSVNRLLSALVAAERVDLAE 170

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
             FK    +  SP + T+  +I+GLC++  + +A  + +++R+ G+ P+V TY++++DG 
Sbjct: 171 RAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGY 230

Query: 272 CKGGCSSQAME---LLQMMISKRHRPN--------------------------------- 295
           CK G + +      LL+ M+     PN                                 
Sbjct: 231 CKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIA 290

Query: 296 --IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
             +VTYS L+ GLC EGK++E V+++D MK  GL P+      +++ FC  G   +A  +
Sbjct: 291 ASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGW 350

Query: 354 LDEMVLGGITPNRLTWSLHI----------------------------RIHNTVVQGLCK 385
           +D M    + PN +T+++ +                            RI+N ++ G  +
Sbjct: 351 IDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTR 410

Query: 386 TDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
               R+    L  MR + +  D +TY+ LI   C KG++ K+ +++DE+++ G  P   T
Sbjct: 411 NGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLT 470

Query: 445 WSAVMTALWDRRKMRQAAEL 464
           ++ ++    ++  ++ A E+
Sbjct: 471 YNTIINGYCEKGNIKSAYEI 490



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 140/325 (43%), Gaps = 34/325 (10%)

Query: 63  ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122
           A +    + LL  + +      E  F  +  GY +      A+RVF++MK+ G   +  +
Sbjct: 236 AGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVT 295

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA-------- 174
           Y  ++  L  E +++   +    M+++G+ P +A+LN ++   CK     DA        
Sbjct: 296 YSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSME 355

Query: 175 --------------------------AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
                                     A  +   M  +G  P++  Y  LI G  R G   
Sbjct: 356 QKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWR 415

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
               L  EM  K     +VTY  LI  LC    V +A++L +EM   G+EP   TY++++
Sbjct: 416 SVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTII 475

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           +G C+ G    A E+   M   + R N+VTY+  +  LC+ GK++E  E+L+ M  +GL 
Sbjct: 476 NGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLV 535

Query: 329 PDAGLYGKIISCFCDIGKYQEAANF 353
           P+   Y  I     + G   +   F
Sbjct: 536 PNGVTYDTIKEGMMEKGYTPDVRGF 560



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 1/259 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S ++  L S  +      L+D +             S+  G+ +     DA    D M
Sbjct: 295 TYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSM 354

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           ++   +P   +Y  ++      +++K A      M   G++P     N LI    +N G 
Sbjct: 355 EQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRN-GD 413

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
             +   +  EM  +G   D  TY  LI  LC  G++ +A +L  EM      P  +TY +
Sbjct: 414 WRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNT 473

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +ING C+  +++ A  +   M       NV TY+  +  LC+ G   +  ELL  M+ K 
Sbjct: 474 IINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKG 533

Query: 292 HRPNIVTYSTLLNGLCKEG 310
             PN VTY T+  G+ ++G
Sbjct: 534 LVPNGVTYDTIKEGMMEKG 552


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 209/413 (50%), Gaps = 12/413 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           VN+AL+  D   A    GF  ++ T+ ++I+ L    Q R A  +L ++  +  +    +
Sbjct: 139 VNEALLFHDHVLAL---GFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVM 195

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + +I  G  +     DA  ++ +M      PT  ++ +++       + K AFR +  M 
Sbjct: 196 YSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMV 255

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              I P   + N+L+ ALCK  G +  A  +   M   G  P   TY TL++G C + ++
Sbjct: 256 MKNINPDAYTFNILVDALCK-EGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEV 314

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +AK +   +     +P   +Y  +ING C+ K V+EA+ LF EM  +G+ P+  TY+SL
Sbjct: 315 GKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSL 374

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGLCK G    A EL+  M +     +IVTY++L++  CK   + +A+ ++ ++K  G+
Sbjct: 375 IDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGI 434

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           +P+   Y  +I   C  G+ + A +   ++++ G   N  T+       N ++ GLCK  
Sbjct: 435 QPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTY-------NIMINGLCKEG 487

Query: 388 PNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
                +V LS M +  I  D++TY ++I     K +  K+ +++ E+V+ G +
Sbjct: 488 LFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVV 540



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 177/331 (53%), Gaps = 15/331 (4%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A  F+ H+  +G      +  +LI  LCK  G   AA ++ R++  +    +   Y T+I
Sbjct: 142 ALLFHDHVLALGFHLNHVTYGILINGLCK-MGQTRAALQVLRQIEGKLVNTNVVMYSTII 200

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +GLC+   + +A  L+ EM  K   PTVVT++SLI G C     ++A RLF EM  K + 
Sbjct: 201 DGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNIN 260

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC---KEGKLQEA 315
           P+ +T++ L+D LCK G   +A  ++ +M+ +   P +VTY+TL++G C   + GK +  
Sbjct: 261 PDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHV 320

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           + I+ RM++    P++  Y  +I+ FC I    EA     EM   GI P+++T+      
Sbjct: 321 LSIISRMRVA---PNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTY------ 371

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            N+++ GLCK      A+++   M N  I  D +TY+SLI  FCK   + K+  +V ++ 
Sbjct: 372 -NSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIK 430

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G  P+  T++ ++  L    +++ A ++ 
Sbjct: 431 EHGIQPNMCTYNILIDGLCKGGQLKNAQDVF 461



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 182/396 (45%), Gaps = 46/396 (11%)

Query: 118 PTPKSYITVLAILVEENQLKL--AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175
           P P S   +  +L   N   +  A   +  MR+I   P +   N ++  L K        
Sbjct: 27  PMPSSAEPLKTVLSIPNGFVVDNAVLSFNRMRQIRQTPSIVEFNKILTYLIKTKNHYPTV 86

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             +  +M ++G  PD +T   LIN  C LG++  A  +F ++              L  G
Sbjct: 87  LSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKI--------------LKMG 132

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           LC +  V EA+   + + + G   N  TY  L++GLCK G +  A+++L+ +  K    N
Sbjct: 133 LCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTN 192

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           +V YST+++GLCK+  + +A  +   M ++ + P    +  +I  FC +GK+++A    +
Sbjct: 193 VVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFN 252

Query: 356 EMVLGGITPNRLTWSL----------------------------HIRIHNTVVQGLCKTD 387
           EMV+  I P+  T+++                             +  +NT++ G C  +
Sbjct: 253 EMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVN 312

Query: 388 PNRAFQVYLSMRNR-SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
                +  LS+ +R  ++ +S +Y+ +I  FCK   + ++  +  E+   G  P + T++
Sbjct: 313 EVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYN 372

Query: 447 AVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +++  L    ++  A E L+ E+ N C+ A++   N
Sbjct: 373 SLIDGLCKAGRIPYAWE-LVDEMHNNCIPADIVTYN 407


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 225/475 (47%), Gaps = 51/475 (10%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           DV  A  +  +A A      R D  T++  +   V A     A  +L R+  +       
Sbjct: 135 DVRGAFELLVAARA------RPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNA 188

Query: 87  I-FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             +  +  G  +     DA+++FD+M E    P   +Y T++   +++  L+  FR +  
Sbjct: 189 FSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQ 248

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY----------- 194
           M   G++P V + NVL+  LC+ +G M     +  EM +R   PD +TY           
Sbjct: 249 MLRHGLKPNVITYNVLLSGLCR-AGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTG 307

Query: 195 ------------------------GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
                                     L+NGLC+ GKI +A+E+ + +       T V Y 
Sbjct: 308 DSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYN 367

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LING CQ   +E A  +F++M+S+ + P+  TY++L++GL K    ++A +L+  M   
Sbjct: 368 TLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKN 427

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++ T++TL++   + G+L++   IL  M+ +GLKP+   YG I++ FC  GK  EA
Sbjct: 428 GVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEA 487

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLT 409
              LD+M +  + P         +++N ++    +    ++AF +   M++  +    +T
Sbjct: 488 VAILDDMFIKDVLPG-------AQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVT 540

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           Y+ LI   CK+  I ++  ++D L   G  PD  +++ +++A   R    +A EL
Sbjct: 541 YNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALEL 595



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 202/393 (51%), Gaps = 13/393 (3%)

Query: 83  ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
           IT ++ LS   G  R  R  +   V D+M      P   +Y  +          +     
Sbjct: 259 ITYNVLLS---GLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSL 315

Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
           +    + G++    + ++L+  LCK+ G +  A ++ + + N G    +  Y TLING C
Sbjct: 316 FEESVKKGVKIGAYTCSILLNGLCKD-GKISKAEEVLQTLVNSGLLQTTVIYNTLINGYC 374

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           ++G +  A  +F++M+++   P  +TY +LINGL + + + EA  L  EM   GV P+V 
Sbjct: 375 QIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVE 434

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T+++L+D   + G   +   +L  M  K  +PN+V+Y +++N  CK GK+ EAV ILD M
Sbjct: 435 TFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDM 494

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
            ++ + P A +Y  II  + + G   +A    ++M   G+ P+ +T+       N +++G
Sbjct: 495 FIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTY-------NLLIKG 547

Query: 383 LCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LCK +  + A ++  S+RN  ++ D ++Y++LI+  C + +  ++  +  E+   G  P 
Sbjct: 548 LCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPS 607

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             T+  + ++L    ++ +  E L  ++++K V
Sbjct: 608 PRTYRMLFSSLGGAGRVHE-MENLYQQMLDKDV 639



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 159/314 (50%), Gaps = 9/314 (2%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P   S NV+I  L K +GT   A K+F EMP +   P+  TY T+I+G  + G +     
Sbjct: 186 PNAFSYNVVIAGLWK-AGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFR 244

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           L+ +M      P V+TY  L++GLC++  + E   + +EM S+ + P+ FTYS L DG  
Sbjct: 245 LWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHS 304

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           + G S   + L +  + K  +    T S LLNGLCK+GK+ +A E+L  +   GL     
Sbjct: 305 RTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTV 364

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
           +Y  +I+ +C IG  + A +   +M    I P+ +T+       N ++ GL K +    A
Sbjct: 365 IYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITY-------NALINGLGKVERITEA 417

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             + + M    ++    T+++LI  + + G + K   I+ ++   G  P+  ++ +++ A
Sbjct: 418 HDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNA 477

Query: 452 LWDRRKMRQAAELL 465
                K+ +A  +L
Sbjct: 478 FCKNGKILEAVAIL 491



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 176/373 (47%), Gaps = 11/373 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G +    T S++++ L    +   AE++L  +       T  I+ ++  GY ++     A
Sbjct: 323 GVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGA 382

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F +MK     P   +Y  ++  L +  ++  A      M + G+ P V + N LI A
Sbjct: 383 FSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDA 442

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             + +G ++  F I  +M  +G  P+  +YG+++N  C+ GKI EA  +  +M  K   P
Sbjct: 443 YGR-AGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLP 501

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
               Y ++I+   +  S ++A  L E+M+S GV P++ TY+ L+ GLCK    S+A ELL
Sbjct: 502 GAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELL 561

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             + +    P++++Y+TL++  C       A+E+   M   G+KP    Y  + S     
Sbjct: 562 DSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGA 621

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSI 403
           G+  E  N   +M+   + P          I+N +V    K  + ++   +   M ++ I
Sbjct: 622 GRVHEMENLYQQMLDKDVVPCS-------GIYNIMVDAYAKCGEESKVEALRKEMSDKGI 674

Query: 404 SVDSLTYSSLITC 416
           +V    Y+S+  C
Sbjct: 675 AVGD--YTSMTNC 685



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 147/296 (49%), Gaps = 10/296 (3%)

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEME-TKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           PD++T+   +      G + EA  + + M    A +P   +Y  +I GL ++ +  +A++
Sbjct: 150 PDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVK 209

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           LF+EM  K V PN  TY++++DG  K G       L   M+    +PN++TY+ LL+GLC
Sbjct: 210 LFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLC 269

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           + G++ E   +LD M  + + PD   Y  +       G  Q   +  +E V  G+     
Sbjct: 270 RAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAY 329

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T S+       ++ GLCK    ++A +V  ++ N  +   ++ Y++LI  +C+ GD+  +
Sbjct: 330 TCSI-------LLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGA 382

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
             I  ++      PD  T++A++  L    ++ +A + L++E+    V   V+  N
Sbjct: 383 FSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHD-LVIEMEKNGVNPSVETFN 437



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 121/299 (40%), Gaps = 39/299 (13%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+  A  IF    +      R D+ T++ +I+ L    +   A DL+  + K   + + +
Sbjct: 378 DLEGAFSIFQQMKSRL---IRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVE 434

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL-------------AIL--- 130
            F ++   YGR  +      +   M+E G +P   SY +++             AIL   
Sbjct: 435 TFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDM 494

Query: 131 -------------------VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
                              +E      AF     M+  G+ P + + N+LIK LCK S  
Sbjct: 495 FIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQS-Q 553

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A ++   + N G  PD  +Y TLI+  C       A EL KEM      P+  TY  
Sbjct: 554 ISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRM 613

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           L + L  +  V E   L+++M  K V P    Y+ ++D   K G  S+   L + M  K
Sbjct: 614 LFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDK 672


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 208/450 (46%), Gaps = 30/450 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+  ++       QF     L++ + +     TE     +  G  +      A
Sbjct: 283 GLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSA 342

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  K+  FG  P    Y  ++  L +   L  A   Y++M  + +     + ++LI +
Sbjct: 343 YDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDS 402

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G +D A   F  M   G     Y Y +LING C+ G +  A+ L+ +M  +   P
Sbjct: 403 FCKR-GMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEP 461

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T  T+T+LI+G C+   VE+A +L+ EM  K + P+V+T+++L+ GLC     ++A +L 
Sbjct: 462 TATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLF 521

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+ ++ +P  VTY+ ++ G CK   + +A E+L+ M   GL PD   Y  +IS  C  
Sbjct: 522 DEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCST 581

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWS--LH--------------------------IRIH 376
           G+   A +F+D++    +  N + +S  LH                          +  H
Sbjct: 582 GRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCH 641

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             ++ G  K  D  R F +   M ++ +  DS+ Y+S+I  + K+G   KS   +D +V 
Sbjct: 642 AVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVT 701

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + C P+  T++A M  L    ++ +A  L 
Sbjct: 702 EKCFPNVVTYTAFMNGLCKVGEIDRAGHLF 731



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 213/457 (46%), Gaps = 45/457 (9%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G R     ++ +I+          AE L  ++  E  + T   F ++  GY +  +   
Sbjct: 422 DGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEK 481

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A +++ +M E    P+  ++  ++  L   N++  A + +  M E  I+P   + NV+I+
Sbjct: 482 AFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIE 541

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK +  MD AF++  +M + G  PD+YTY  LI+GLC  G++  AK+   ++  K   
Sbjct: 542 GYCK-AHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLK 600

Query: 224 PTVVTYTSLINGLCQSKSVEEAM--------------------------------RLF-- 249
              + Y++L++G C    + EA+                                RLF  
Sbjct: 601 LNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGL 660

Query: 250 -EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            ++M  +G+ P+   Y+S++D   K G   ++ E L +M++++  PN+VTY+  +NGLCK
Sbjct: 661 LKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCK 720

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G++  A  + ++M    + P++  YG  +      G  +EA +   EM L G+  N  T
Sbjct: 721 VGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEM-LKGLLANTAT 779

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           +       N +++G CK      A +V   M    I  D +TYS++I   C+ GD+  + 
Sbjct: 780 Y-------NILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAV 832

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            + D ++  G  PD   ++ ++        + +A EL
Sbjct: 833 ELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFEL 869



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 210/439 (47%), Gaps = 17/439 (3%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---IT 84
           + K +++++        G + D  T S +I  L     F  A++ +  +   + D   +T
Sbjct: 196 IRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVT 255

Query: 85  EDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
            ++ +  +C+G G     L+A+ V   ++E G +    +Y T++       Q        
Sbjct: 256 YNVLIHGLCKGGG----VLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLM 311

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M E+G  P  A+++ L+  L +  G +D+A+ +  ++   G  P+ + Y  LIN LC+
Sbjct: 312 NEMVELGFVPTEAAVSGLVDGL-RKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCK 370

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
              + +A+ L+K M +       VTY+ LI+  C+   ++ A   F  M   G+   ++ 
Sbjct: 371 GEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYP 430

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y+SL++G CK G  S A  L   MI++   P   T++TL++G CK+ ++++A ++   M 
Sbjct: 431 YNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMN 490

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            + + P    +  +I   C   +  EA+   DEMV   I P  +T+       N +++G 
Sbjct: 491 EKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTY-------NVMIEGY 543

Query: 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK  + ++AF++   M +  +  D+ TY  LI+  C  G +  +   +D+L       +E
Sbjct: 544 CKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNE 603

Query: 443 GTWSAVMTALWDRRKMRQA 461
             +SA++     + ++ +A
Sbjct: 604 MCYSALLHGYCGQGRLTEA 622



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 174/377 (46%), Gaps = 9/377 (2%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           +I  G  R+ + +    VFD+    G +P P +   V+  L E      A      M   
Sbjct: 188 AILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESN 247

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
                + + NVLI  LCK  G ++ A ++ + +  +G   D  TY TL+ G CR+ +  +
Sbjct: 248 RFDLSIVTYNVLIHGLCKGGGVLE-ALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDD 306

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
              L  EM      PT    + L++GL +  +++ A  L  ++   G  PN+F Y++L++
Sbjct: 307 GICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALIN 366

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            LCKG    +A  L + M S     N VTYS L++  CK G L  A     RM   G++ 
Sbjct: 367 ALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRE 426

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388
               Y  +I+  C  G    A     +M+  G+ P   T++       T++ G CK    
Sbjct: 427 TIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFT-------TLISGYCKDLQV 479

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
            +AF++Y  M  + I+    T+++LI   C   ++ +++++ DE+V     P E T++ +
Sbjct: 480 EKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVM 539

Query: 449 MTALWDRRKMRQAAELL 465
           +        M +A ELL
Sbjct: 540 IEGYCKAHNMDKAFELL 556



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 165/387 (42%), Gaps = 43/387 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I  L S N+   A  L D + + K   TE  +  +  GY + H    A  + + M
Sbjct: 500 TFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDM 559

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P   +Y  +++ L    ++  A  F   + +  ++      + L+   C     
Sbjct: 560 LHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRL 619

Query: 172 MDAA----------------------------------FKIFREMPNRGCTPDSYTYGTL 197
            +A                                   F + ++M ++G  PDS  Y ++
Sbjct: 620 TEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSM 679

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+   + G   ++ E    M T+ C P VVTYT+ +NGLC+   ++ A  LFE+M +  +
Sbjct: 680 IDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANI 739

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PN  TY   +D L K G   +A +L   M+ K    N  TY+ L+ G CK G+L EA +
Sbjct: 740 SPNSVTYGCFLDSLTKEGNMKEATDLHHEML-KGLLANTATYNILIRGFCKLGRLIEATK 798

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +L  M   G+ PD   Y  II   C  G    A    D M+  G+ P+ + +       N
Sbjct: 799 VLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAF-------N 851

Query: 378 TVVQGLCKTDP-NRAFQVYLSMRNRSI 403
            ++ G C     ++AF++   M +R +
Sbjct: 852 LLIYGCCVNGALDKAFELRNDMLSRGL 878



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 190/470 (40%), Gaps = 94/470 (20%)

Query: 48  HDNSTFSLMISKLVSANQFRPAEDLLDRV----------------NKEKCDITEDIFLSI 91
           H  ++F++++  LV    F PA  LL  +                + ++C  +  +    
Sbjct: 94  HTTTSFAILVHALVQNKLFWPANSLLHTLLLRGSDPKFVFEKFLESHKQCKFSSTLGFDF 153

Query: 92  CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151
                 VH  L   RVFD              + VL +++    L               
Sbjct: 154 L-----VHSYLQNTRVFDA-------------VVVLRLMLGNTLL--------------- 180

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
            P V +L+ ++  L +    +   +++F E  N G  PD YT   +I  LC L     AK
Sbjct: 181 -PEVRTLSAILNGLLRIRKFI-LVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAK 238

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY------- 264
           E    ME+     ++VTY  LI+GLC+   V EA+ + + +R KG++ +V TY       
Sbjct: 239 EKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGF 298

Query: 265 ----------------------------SSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
                                       S L+DGL K G    A +L+  +      PN+
Sbjct: 299 CRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNL 358

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
             Y+ L+N LCK   L +A  +   M    L  +   Y  +I  FC  G    A ++   
Sbjct: 359 FVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGR 418

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
           M+  GI          I  +N+++ G CK  D + A  +Y  M N  +   + T+++LI+
Sbjct: 419 MIEDGIRET-------IYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLIS 471

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +CK   + K+ ++  E+      P   T++A++  L    +M +A++L 
Sbjct: 472 GYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLF 521



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 140/321 (43%), Gaps = 37/321 (11%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHR 100
           NG   D  T+  +IS L S  +   A+D +D ++K+   + E  + ++  GY   GR+  
Sbjct: 562 NGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTE 621

Query: 101 PL-----------------------------DAMRVF---DKMKEFGCEPTPKSYITVLA 128
            L                             D  R+F    KM + G  P    Y +++ 
Sbjct: 622 ALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMID 681

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
              +E   K +      M      P V +    +  LCK  G +D A  +F +M     +
Sbjct: 682 AYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCK-VGEIDRAGHLFEKMLTANIS 740

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           P+S TYG  ++ L + G + EA +L  EM  K       TY  LI G C+   + EA ++
Sbjct: 741 PNSVTYGCFLDSLTKEGNMKEATDLHHEM-LKGLLANTATYNILIRGFCKLGRLIEATKV 799

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
             EM   G+ P+  TYS+++   C+ G    A+EL   M+ K   P+ V ++ L+ G C 
Sbjct: 800 LSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCV 859

Query: 309 EGKLQEAVEILDRMKLQGLKP 329
            G L +A E+ + M  +GLKP
Sbjct: 860 NGALDKAFELRNDMLSRGLKP 880



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 116/258 (44%), Gaps = 11/258 (4%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101
           Y  G R D+  ++ MI        F+ + + LD +  EKC      + +   G  +V   
Sbjct: 665 YDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEI 724

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A  +F+KM      P   +Y   L  L +E  +K A   +  M + G+    A+ N+L
Sbjct: 725 DRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTATYNIL 783

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I+  CK  G +  A K+  EM   G  PD  TY T+I   CR G +  A EL+  M  K 
Sbjct: 784 IRGFCK-LGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKG 842

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP---------NVFTYSSLMDGLC 272
             P  V +  LI G C + ++++A  L  +M S+G++P         ++   + LM G C
Sbjct: 843 VEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGC 902

Query: 273 KGGCSSQAMELLQMMISK 290
             G    A+ L   M+++
Sbjct: 903 VTGEVDTALRLYHSMLTR 920



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 27/266 (10%)

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS- 278
           K  + T  ++  L++ L Q+K    A  L   +  +G +P  F +   ++   +   SS 
Sbjct: 90  KNMNHTTTSFAILVHALVQNKLFWPANSLLHTLLLRGSDPK-FVFEKFLESHKQCKFSST 148

Query: 279 -----------------QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
                             A+ +L++M+     P + T S +LNGL +  K     E+ D 
Sbjct: 149 LGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDE 208

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
               G+KPD      +I   C++  +  A     E +L  +  NR  + L I  +N ++ 
Sbjct: 209 SVNAGVKPDPYTCSAVIRSLCELKDFCRAK----EKILW-MESNR--FDLSIVTYNVLIH 261

Query: 382 GLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           GLCK      A +V  S+R + +  D +TY +L+  FC+         +++E+V  G +P
Sbjct: 262 GLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVP 321

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLL 466
            E   S ++  L  +  +  A +L++
Sbjct: 322 TEAAVSGLVDGLRKKGNIDSAYDLVV 347


>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Vitis vinifera]
          Length = 464

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 222/469 (47%), Gaps = 53/469 (11%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+  ++  L+R + D   AL +F +   +    FR+ + ++ L+I+KL  +  F   E +
Sbjct: 7   ISPFRLSSLLRLQNDPKLALQLFQNPNPD-PKPFRYTHLSYDLIITKLGRSRMFHEMEQI 65

Query: 73  LDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           L ++ +E +    E IF ++   YGR   P  A++ F+ + EF C+ T KS  ++L  L+
Sbjct: 66  LSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQRTVKSLNSLLNALL 125

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
           +                                 CK     D          ++  TPD 
Sbjct: 126 K---------------------------------CKEFEKFDGILSGI----DKFATPDV 148

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  LIN  C  G + +A  +F EM  K   P VVT+ +LI+GLC    ++EA RL E+
Sbjct: 149 CTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFRLKED 208

Query: 252 M-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           M +   V+PN F Y+SLM GLC+    S A EL + M++ + R +   YSTL+  L K G
Sbjct: 209 MVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVG 268

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +  E   +L+ M+  G KPD   Y  +IS FC+   ++ A   L+EMV  G  P+ +++ 
Sbjct: 269 RKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISY- 327

Query: 371 LHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N ++ GLCK    R A  ++  M  R  + D  +Y  L    C+    +++A I
Sbjct: 328 ------NVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFI 381

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           +DE+V  G  P   + +  + AL     +      LL +++N  V+  V
Sbjct: 382 LDEMVFKGYAPKSASKTKFVEALCQEGNLE-----LLCKVLNSLVKGNV 425



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 8/240 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ ++  L   N+   A +L   +   K  +   I+ ++     +V R  +   V ++M
Sbjct: 221 VYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEM 280

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +E GC+P   +Y  +++    E   + A+     M   G +P V S NV+I  LCK  G 
Sbjct: 281 RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCK-EGK 339

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A  +F +MP RGCTPD  +Y  L +GLC   +  EA  +  EM  K  +P   + T 
Sbjct: 340 WREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASKTK 399

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVF---TYSSLMDGLCKGGCSSQAMELLQMMI 288
            +  LCQ  ++E   ++   +    V+ NV     +S  +  +CK    S   EL+ + +
Sbjct: 400 FVEALCQEGNLELLCKVLNSL----VKGNVIDGDAWSLAVSKVCKKEKLSNGSELVDIFL 455



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 75/204 (36%), Gaps = 36/204 (17%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           K M     ++ S     LI A   V +   +F        NG + D  T++ MIS   + 
Sbjct: 243 KEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNE 302

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
             F  A                         YG          V ++M   GC+P   SY
Sbjct: 303 KDFEAA-------------------------YG----------VLEEMVAKGCKPDVISY 327

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             +++ L +E + + A   +  M   G  P V S  +L   LC+     +AAF I  EM 
Sbjct: 328 NVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAF-ILDEMV 386

Query: 184 NRGCTPDSYTYGTLINGLCRLGKI 207
            +G  P S +    +  LC+ G +
Sbjct: 387 FKGYAPKSASKTKFVEALCQEGNL 410


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 157/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A  +F EM ++G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 206/430 (47%), Gaps = 57/430 (13%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++Q++ + K    A  +F +A  E     R D   FS +I+  + +   R A +      
Sbjct: 35  LIQIVVSRKGKGSASAVF-AAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTK 93

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE------PTPKSYITVLA-IL 130
           + K  +  D     CR   +V   L  ++ F  +  F  E      P    +  +L    
Sbjct: 94  EHKFRVPFDT----CR---KVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSF 146

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V+E +++LA   +  + + G++P V S N L+    K  G ++  F++   M   G  PD
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIK-LGDLNEGFRLKNAMQASGVQPD 205

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YTY  LINGLC+  K+ +A  LF EM  K   P  VT+T+LI+G C++  V+ AM +++
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M S+ + P++ TY++L+ GLCK G   QA +L+  MI K  +P+ +TY+TL++G CKEG
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEG 325

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L+ A E   RM  + ++ D   Y  +IS  C  G+  +A   L EM+  G+ P      
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------ 379

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                                              +  TY+ +I  FCKKGD+   ++++
Sbjct: 380 -----------------------------------EIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 431 DELVLDGCLP 440
            E+  DG +P
Sbjct: 405 KEMQRDGYMP 414



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 153/275 (55%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++   + G+I  A+ +F  +      P+VV++ +L+NG  +   + E  RL   
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A  L   M+ K   PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +DEM++ G+ P+++T++ 
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYT- 315

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK  D   AF+    M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  P+ GT++ ++     +  +   ++LL
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 11/285 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           K  G+  A F    E   +G    D Y +  LI      G + +A E ++  +       
Sbjct: 43  KGKGSASAVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVP 100

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             T   ++  L + K  +     +EE    G   +++ ++ LM    K G    A  +  
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFD 160

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I+  C   
Sbjct: 161 AITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKES 220

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
           K  +A    DEM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+S
Sbjct: 221 KMDDANVLFDEMLDKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++LI   CKKGD+ ++  ++DE+++ G  PD+ T++ ++
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLI 318


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 192/363 (52%), Gaps = 9/363 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A   + ++ + G  P  K +  ++  ++   +L  A   +  M   G+ P V + N L+
Sbjct: 227 EAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLM 286

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             +CK S  +++A  +   M   G  PD YTYG  + GLC+ G+I +A E+F+EM  +  
Sbjct: 287 SGMCKAS-DLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGV 345

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P  V +T+LI+  C+  +V   + L  EM ++G++ ++  Y++L +GLC+      A +
Sbjct: 346 NPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAAND 405

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +++ M +   +P+ VTY+TL++G CKEG+L  A+E+   M  +G+  D   Y  +IS   
Sbjct: 406 IVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLS 465

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNR 401
             G+  ++   L EM+  G+ P+  T+++       V+   CK +D    F++   M+N+
Sbjct: 466 KSGRSVDSERILCEMMEAGLEPDNTTYTM-------VIDAFCKNSDVKTGFKLLKEMQNK 518

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
                 +TY+ ++  FC  G +  +  +++ ++  G  PD+ T++ ++       K+R A
Sbjct: 519 GRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDA 578

Query: 462 AEL 464
            EL
Sbjct: 579 EEL 581



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 178/334 (53%), Gaps = 10/334 (2%)

Query: 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI 198
           A+ FY  + + G+ P     N+L++ + + SG + +A  +F EM  RG  P   T+ TL+
Sbjct: 228 AYAFYLQLLDAGVPPEAKQFNMLMRDMIR-SGKLASARNMFDEMLRRGVPPTVVTFNTLM 286

Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
           +G+C+   +  A  L   M     +P V TY + + GLC++  +++A+ +FEEMR +GV 
Sbjct: 287 SGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVN 346

Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
           PN   +++L+D  CK G  +  +EL + M ++  + ++V Y+ L NGLC+   L+ A +I
Sbjct: 347 PNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDI 406

Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
           ++ M+  GLKPD   Y  +I  FC  G+   A     EM   G+  + +T++       T
Sbjct: 407 VEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYT-------T 459

Query: 379 VVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           ++ GL K+  +  + ++   M    +  D+ TY+ +I  FCK  D+    +++ E+   G
Sbjct: 460 LISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKG 519

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
             P   T++ VM       +M+  A++LL  ++N
Sbjct: 520 RKPGVVTYNVVMNGFCILGQMKN-ADMLLNAMLN 552



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 179/376 (47%), Gaps = 10/376 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +   F++++  ++ + +   A ++ D + +     T   F ++  G  +      A
Sbjct: 239 GVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSA 298

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +   M + G  P   +Y   +  L +  +++ A   +  MRE G+ P       LI A
Sbjct: 299 NALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDA 358

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            CK  G + A  ++ REM  RG   D   Y  L NGLCR+  +  A ++ +EM      P
Sbjct: 359 HCK-EGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKP 417

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTYT+LI+G C+   ++ AM + +EM  +GV  +  TY++L+ GL K G S  +  +L
Sbjct: 418 DKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERIL 477

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+     P+  TY+ +++  CK   ++   ++L  M+ +G KP    Y  +++ FC +
Sbjct: 478 CEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCIL 537

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
           G+ + A   L+ M+  G+ P+ +T+       N ++ G CK    R  +   S   + + 
Sbjct: 538 GQMKNADMLLNAMLNIGVCPDDITY-------NILLDGHCKHGKVRDAEELKSA--KGMV 588

Query: 405 VDSLTYSSLITCFCKK 420
            D   Y+SLI  F KK
Sbjct: 589 SDFGLYTSLINEFVKK 604



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 136/276 (49%), Gaps = 9/276 (3%)

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           RL  + EA   + ++      P    +  L+  + +S  +  A  +F+EM  +GV P V 
Sbjct: 221 RLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVV 280

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T+++LM G+CK    + A  L  +M      P++ TY   + GLCK G++Q+AVE+ + M
Sbjct: 281 TFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEM 340

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           + +G+ P+  ++  +I   C  G          EM   GI  + + +       N +  G
Sbjct: 341 RERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAY-------NALANG 393

Query: 383 LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
           LC+  D   A  +   MRN  +  D +TY++LI  FCK+G++  +  +  E+  +G   D
Sbjct: 394 LCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALD 453

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
           E T++ +++ L  +      +E +L E+M   +E +
Sbjct: 454 EVTYTTLISGL-SKSGRSVDSERILCEMMEAGLEPD 488


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 185/379 (48%), Gaps = 9/379 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T +L+I  L   + F     +L+ +      I    F  +   Y +      A+  F KM
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+FGC+P   +Y ++L ++V++    LA   Y  M ++   P  A+  +L+  LCKN G 
Sbjct: 158 KDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKN-GK 216

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D A K+F EM  +G  P++  Y  +++GLC+  +  +   L   M+   C P  +T  +
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++G C+   ++EA  L +    +G    +  YSSL+DGL +     +  E  + M    
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAG 336

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P++V Y+ L+ G C+ G +  A+ +L+ M  +GL PD   Y  +I  FCD+G   +A 
Sbjct: 337 IEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKAR 396

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTY 410
           +   E+      P   T+++       ++ G+C+    + A Q++  M N   S   +T+
Sbjct: 397 SLQLEISKNDCFPTSCTYTI-------LICGMCRNGLLDEARQIFNQMENLGCSPSIMTF 449

Query: 411 SSLITCFCKKGDIHKSARI 429
           ++LI   CK G++ ++  +
Sbjct: 450 NALIDGLCKAGELEEARHL 468



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 176/411 (42%), Gaps = 85/411 (20%)

Query: 129 ILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
           ++ E+ + +L FRF+    R    +  V   N++I  L K+ G  D  +KI  E+ N   
Sbjct: 70  VMREQRRPELGFRFFIWTTRRRSFRSWVTH-NLVIDMLAKDDG-FDTYWKILEELKNSNI 127

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS---------------- 231
                T+  LI    + G   +A E F +M+   C P V TY S                
Sbjct: 128 QIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALA 187

Query: 232 -------------------LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
                              L+NGLC++   ++A+++F+EM  KG+ PN   Y+ ++ GLC
Sbjct: 188 VYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLC 247

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD------------ 320
           +   +     LL  M      P+ +T + LL+G CK G++ EA  +L             
Sbjct: 248 QAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIK 307

Query: 321 -----------------------RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
                                  +M   G++PD  LY  +I  FC++G    A N L++M
Sbjct: 308 GYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT---DPNRAFQVYLSMRNRSISVDSLTYSSLI 414
              G++P+   +       N +++G C     D  R+ Q+ +S +N      S TY+ LI
Sbjct: 368 TQRGLSPDTYCY-------NALIKGFCDVGLLDKARSLQLEIS-KNDCFPT-SCTYTILI 418

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              C+ G + ++ +I +++   GC P   T++A++  L    ++ +A  L 
Sbjct: 419 CGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLF 469



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/462 (22%), Positives = 194/462 (41%), Gaps = 58/462 (12%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           +S +I  L  A ++   ++   ++ K   +    ++  + RG+  V     A+ + + M 
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMT 368

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           + G  P    Y  ++    +   L  A      + +    P   +  +LI  +C+N G +
Sbjct: 369 QRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRN-GLL 427

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET------------- 219
           D A +IF +M N GC+P   T+  LI+GLC+ G++ EA+ LF +ME              
Sbjct: 428 DEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQG 487

Query: 220 ---------------KACS--------------------PTVVTYTSLINGLCQSKSVEE 244
                          + C                     P ++TY  LING C++K++  
Sbjct: 488 ADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNING 547

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A +LF E++ KG  P+  TY +L+DG  +      A  +L  M+     P+   Y  L+ 
Sbjct: 548 AFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMT 607

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
             C++GKL  A  +  +  L+ L        K+     + G+ ++A   L EM       
Sbjct: 608 WSCRKGKLSVAFSLWLKY-LRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEM------- 659

Query: 365 NRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           N    +  I  +   + GLC+      A +++L ++   + V+  +   LI   CK G++
Sbjct: 660 NFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNL 719

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +  I    +  G +      + ++ +L  + KM+ A +LL
Sbjct: 720 EMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLL 761



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 130/310 (41%), Gaps = 39/310 (12%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D  T++++I+    A     A  L   +  +        + ++  G+ RV R  D
Sbjct: 523 SGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREED 582

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLI 162
           A RV D+M + GC P+   Y  ++     + +L +AF  + +++R +  Q          
Sbjct: 583 AFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQE--------- 633

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
                     D   K+  E   +                   G++ +A     EM  K  
Sbjct: 634 ----------DETLKLAEEHFEK-------------------GELEKAVRCLLEMNFKLN 664

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +  +  YT  + GLCQ++  EEA+++F  ++   ++ N  +   L++GLCK G    A++
Sbjct: 665 NFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVD 724

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +    + K         + LL  L  + K++ A+++L+RM   G   D  L+ +I S   
Sbjct: 725 IFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRMNSAGYDLDEYLHHRIKSYLL 784

Query: 343 DIGKYQEAAN 352
            + K QE  N
Sbjct: 785 SVWKAQEMEN 794


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 202/391 (51%), Gaps = 18/391 (4%)

Query: 88  FLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           FLS +C+  G++ +  +A R    M+E      P  Y  ++ +L+E  ++  A      +
Sbjct: 311 FLSGLCKS-GKIEQAFEACRT---MQESLSSSQP-VYDMLIRLLIESGRIDKAEEACLEI 365

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
               IQP   + + +I+ LCK +G +D+A  +   M  RG  PD  T+  LIN LC+  K
Sbjct: 366 AGRNIQPSSGTCHSVIQELCK-AGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADK 424

Query: 207 IYEAKELFKEMETK--ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS-KGVEPNVFT 263
           I EA+E  + M+ K  + S +  +Y SL+N LC++K V +A  +F  M S +   P+V +
Sbjct: 425 IQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVS 484

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           YS L+DG CK     +A +L + MI     PN+ TY+  LNGL ++G++ +A  + + M 
Sbjct: 485 YSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMV 544

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G  PD   Y  +I  F    K+ +A    + M+  G  PN +T+       N ++ GL
Sbjct: 545 AAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTY-------NCLLHGL 597

Query: 384 CK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           CK + P+ A +++  M  R    D +TY++L+  FC  G I ++  + DE+V  G  PD 
Sbjct: 598 CKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDV 657

Query: 443 GTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             ++ ++   +   K  +A +L  + +  +C
Sbjct: 658 VAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC 688



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 214/419 (51%), Gaps = 13/419 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            + ++I  L+ + +   AE+    +       +     S+ +   +  R   A+ + + M
Sbjct: 341 VYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETM 400

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVAS-LNVLIKALCKNS 169
            + G  P   ++  ++  L + ++++ A  F + M R+I  +       N L+ +LCK +
Sbjct: 401 IKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCK-A 459

Query: 170 GTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
             +  AF IF  M   R   PD  +Y  LI+G C++ ++  A++L+K+M    C P V T
Sbjct: 460 KKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTT 519

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y + +NGL +   + +A  ++EEM + G  P+V TYS+L+ G        QA EL + MI
Sbjct: 520 YNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMI 579

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           S+  RPN VTY+ LL+GLCKE K  EA E+  +M  +G  PD   Y  ++  FC++GK +
Sbjct: 580 SRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIE 639

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
           +A    DEMV  G  P+ + +       N +++G  +   P  A Q++  M +R    D+
Sbjct: 640 QAVEVFDEMVSKGHDPDVVAY-------NCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDT 692

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLD-GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++++ +I    K   +  +  + + +  D GC PD  T+++++  L   +++ +A ++ 
Sbjct: 693 VSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVF 751



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 177/333 (53%), Gaps = 11/333 (3%)

Query: 123 YITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           Y ++L  L +  ++  AF  +  M  E    P V S ++LI   CK    +  A K++++
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKID-ELGRAEKLYKQ 507

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M +  C P+  TY   +NGL R G+I +A+ +++EM    CSP V+TY++LI+G   ++ 
Sbjct: 508 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARK 567

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
            ++A  LFE M S+G  PN  TY+ L+ GLCK     +A EL + M+ +   P+ VTY+T
Sbjct: 568 HDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTT 627

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           LL G C  GK+++AVE+ D M  +G  PD   Y  ++  F   GK  EA      MV   
Sbjct: 628 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQ 687

Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM-RNRSISVDSLTYSSLITCFCK 419
             P+ ++       HN ++ GL K    + A +V+  M ++   S D +TY+SLI   C 
Sbjct: 688 CKPDTVS-------HNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCG 740

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +  + ++ ++  E+      PD   ++ ++ A+
Sbjct: 741 EQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 174/357 (48%), Gaps = 13/357 (3%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           K V++A  IF +  +E +  F  D  ++S++I      ++   AE L  ++    C    
Sbjct: 460 KKVHQAFAIFSTMVSERS--FVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNV 517

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + +   G  R  R  DA  V+++M   GC P   +Y T++       +   A   +  
Sbjct: 518 TTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFET 577

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M   G +P   + N L+  LCK S   D A ++FR+M  RGC PD  TY TL+ G C +G
Sbjct: 578 MISRGCRPNAVTYNCLLHGLCKESKP-DEAHELFRKMVERGCDPDRVTYTTLLYGFCNVG 636

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           KI +A E+F EM +K   P VV Y  L+ G  ++    EA +LF+ M S+  +P+  +++
Sbjct: 637 KIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHN 696

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRH--RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            ++DGL K      A+E+ + M  + H   P++VTY++L+ GLC E +L EA+++   + 
Sbjct: 697 IMIDGLSKAKRLDDAVEVFERM-EQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEID 755

Query: 324 LQGLKPDAGLYGKIISCF-CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
              L PD   +  ++    C I  YQ    F D         N L  ++H   H  V
Sbjct: 756 RLKLSPDPHAFNVLLEAIKCGI-VYQFEIRFKDPPAF-----NVLMEAMHAAGHKPV 806



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 221/501 (44%), Gaps = 57/501 (11%)

Query: 8   KWSTKITSAQVL-QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF 66
           KW  K +  + +  +I+  +D  +AL  F    A     F+HD  T++ ++ KL+     
Sbjct: 89  KWDGKSSCRETVGAVIKHLRDGGEALTFFRWLQA---RNFKHDVFTYNCLLDKLIRHRDL 145

Query: 67  RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
           + A  + +++  +        +  + +         +A+R F +M + G +P+   Y  V
Sbjct: 146 KQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKV 205

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF---KIFREMP 183
              L    +     R +       ++  VA   +L KAL  N    D A    K+FR M 
Sbjct: 206 TECLKATGKEGEFSRVFGR----DLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMV 261

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP-TVVTYTSLINGLCQSKSV 242
             GC PD+  Y  ++   C+L  + EA +LF EM  ++ +P   V +T+ ++GLC+S  +
Sbjct: 262 KSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKI 321

Query: 243 EEAMR----------------------LFE------------EMRSKGVEPNVFTYSSLM 268
           E+A                        L E            E+  + ++P+  T  S++
Sbjct: 322 EQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVI 381

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM--KLQG 326
             LCK G    A+ LL+ MI + + P++ T+S L+N LCK  K+QEA E L  M  K+  
Sbjct: 382 QELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISS 441

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG-GITPNRLTWSLHIRIHNTVVQGLCK 385
                  Y  +++  C   K  +A      MV      P+ +++S+       ++ G CK
Sbjct: 442 RSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSI-------LIDGFCK 494

Query: 386 TDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
            D   RA ++Y  M + +   +  TY++ +    +KG I  +  + +E+V  GC PD  T
Sbjct: 495 IDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVIT 554

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S ++      RK  QA EL 
Sbjct: 555 YSTLIHGFSLARKHDQAHELF 575



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 140/325 (43%), Gaps = 16/325 (4%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G   C  ++  +IK L ++ G    A   FR +  R    D +TY  L++ L R   + +
Sbjct: 92  GKSSCRETVGAVIKHL-RDGGE---ALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQ 147

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A ++F++M  +   P   TY  L+   C  ++ +EA+R F EM  KG +P+   Y  + +
Sbjct: 148 AGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTE 207

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            L   G   +   +    + KR    ++    LL     + K  EA ++   M   G KP
Sbjct: 208 CLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKP 267

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP-NRLTWSLHIRIHNTVVQGLCKTDP 388
           DA +Y  ++   C +    EA     EM +    P N + W+         + GLCK+  
Sbjct: 268 DATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWT-------AFLSGLCKSGK 320

Query: 389 -NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
             +AF+   +M+  S+S     Y  LI    + G I K+     E+      P  GT  +
Sbjct: 321 IEQAFEACRTMQE-SLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHS 379

Query: 448 VMTALWDRRKMRQAAELLLLELMNK 472
           V+  L    ++  A  L LLE M K
Sbjct: 380 VIQELCKAGRVDSA--LSLLETMIK 402


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 202/420 (48%), Gaps = 14/420 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDL-LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           TFS ++  L    +   A D+ L R+    C      +  + +G    +R   A+ +   
Sbjct: 133 TFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHT 192

Query: 111 M----KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           M       GC P   SY TV+  L+ E QL  A+  +  M + G+ P   + N L+   C
Sbjct: 193 MMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYC 252

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
            +SG    A  IFR+M   G  PD  TY TL+  LC+ G+  EA+++F  M  K   P  
Sbjct: 253 -SSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDS 311

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
             Y +L++G      + +  +L + M   G +P+ + ++ L+    K G   +AM     
Sbjct: 312 SIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSK 371

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M  +   PNIVTY T+++ LC+ GK+ +A+   DR+  +GL P+  ++  +I   C   K
Sbjct: 372 MRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDK 431

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
           + +A     EM+  GI PN + +       NT++  LCK     RA  ++  M    +  
Sbjct: 432 WDKAEELAVEMIGRGICPNTIFF-------NTLLNHLCKEGMVTRAKNIFDLMVRVDVQC 484

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D +TY++LI  +C  G + ++ ++++ +VLDG  P+E T++ ++       ++  A  L 
Sbjct: 485 DVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLF 544



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 227/454 (50%), Gaps = 12/454 (2%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           ++   V+  +  E  ++KA  +FD    +   G   +  T++ ++    S+ + + A  +
Sbjct: 207 VSYTTVINGLLREGQLDKAYCLFDEMLDQ---GMSPNCITYNCLLHGYCSSGKPKEAIGI 263

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
             ++ ++  +     + ++     +  R ++A +VFD M + G +P    Y T+L     
Sbjct: 264 FRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYAT 323

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           E  L    +    M   G QP     N+LI A  K+ G +D A   F +M  +G  P+  
Sbjct: 324 EGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKH-GMVDEAMLAFSKMRQQGLHPNIV 382

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TYGT+++ LCR+GK+ +A   F  + ++  +P  V + +LI+GLC     ++A  L  EM
Sbjct: 383 TYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEM 442

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             +G+ PN   +++L++ LCK G  ++A  +  +M+    + +++TY+TL++G C +GK+
Sbjct: 443 IGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKV 502

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
            EA ++L+ M L G+KP+   Y  II+ +C  G+ ++A +   +M   G+ P        
Sbjct: 503 DEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPG------- 555

Query: 373 IRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           I I++T++ GL +T     A ++YL M    I +   TY+ ++   C+      + R+  
Sbjct: 556 IVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFH 615

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            L L        T++ ++ AL    +  +A +L 
Sbjct: 616 NLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLF 649



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 190/387 (49%), Gaps = 33/387 (8%)

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYRHMREIGIQPCVA 156
           P  A+ +F++M        P++ +   +I++        L LAF     +   G      
Sbjct: 81  PAVALSLFNRM--------PRADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAI 132

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + + L+K LC +  T DA     R MP  GCTP++++Y  L+ GLC   +  +A  L   
Sbjct: 133 TFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHT 192

Query: 217 M---ETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           M   +T+  C P VV+YT++INGL +   +++A  LF+EM  +G+ PN  TY+ L+ G C
Sbjct: 193 MMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYC 252

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
             G   +A+ + + M      P++VTY+TL+  LCK G+  EA ++ D M  +G KPD+ 
Sbjct: 253 SSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSS 312

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF 392
           +YG ++  +   G   +    LD MV  G  P+   +  +I I      G+     + A 
Sbjct: 313 IYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDH--YIFNILIGAYAKHGMV----DEAM 366

Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             +  MR + +  + +TY +++   C+ G +  +    D L+ +G  P+   +  ++  L
Sbjct: 367 LAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGL 426

Query: 453 -----WDRRKMRQAAELLLLELMNKCV 474
                WD+      AE L +E++ + +
Sbjct: 427 CACDKWDK------AEELAVEMIGRGI 447



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 167/350 (47%), Gaps = 14/350 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   V+  +     V+ A+  FD   +E   G   +   F  +I  L + +++  AE+L
Sbjct: 382 VTYGTVMDALCRVGKVDDAMSQFDRLISE---GLTPNGVVFRTLIHGLCACDKWDKAEEL 438

Query: 73  -LDRVNKEKCDITEDIFLSICRGY----GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
            ++ + +  C  T  IF +    +    G V R   A  +FD M     +    +Y T++
Sbjct: 439 AVEMIGRGICPNT--IFFNTLLNHLCKEGMVTR---AKNIFDLMVRVDVQCDVITYTTLI 493

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
                + ++  A +    M   G++P   + N +I   CKN G ++ A  +FR+M ++G 
Sbjct: 494 DGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKN-GRIEDACSLFRQMASKGV 552

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            P    Y T+++GL +  +I  AKEL+  M        + TY  ++ GLCQ+   ++A+R
Sbjct: 553 NPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALR 612

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +F  +          T++ ++D L KGG   +A +L   ++++   PN+VTY  ++  L 
Sbjct: 613 MFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLI 672

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           ++G L+E  ++   ++  G   D+ +   ++      G+ ++A  +L ++
Sbjct: 673 EQGLLEELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSKI 722


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 191/360 (53%), Gaps = 15/360 (4%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           P+  S   +LA LV  +++ LA R +R      + P   + N++I  LCK +G +  A  
Sbjct: 151 PSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCK-TGQLRKAGD 209

Query: 178 IFREMPNRGCTPDSYTYGTLINGL---CRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           + ++M   G  P   TY TLI+G     R GK+Y    L KEM     SP VVT+  LIN
Sbjct: 210 VAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLIN 269

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G C+  ++  A+++FEEMR  G+  N+ TY+SL+ GLC+ G    +M+L++ M  +    
Sbjct: 270 GYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEM-EELGLA 328

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
            + T +++LNG CK+G + EA   +D M  +G+KP+   Y  +I  +  +GK +EA    
Sbjct: 329 TLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAK 388

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSL 413
             M   GI+P+       ++ +N ++ G   +   R+    L  M+   +  D +TY+ L
Sbjct: 389 GAMAGKGISPD-------VKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVL 441

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           I   C KG++ K+ +++DE+V  G  P   T++A++    ++   + A ++ +   M KC
Sbjct: 442 IGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRI--RMEKC 499



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 180/376 (47%), Gaps = 46/376 (12%)

Query: 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK--NSGTMDAA 175
           P   ++  V++ L +  QL+ A    + MR  G+ P V + N LI    K   +G M   
Sbjct: 186 PDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHV 245

Query: 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
             + +EM   G +P+  T+  LING C+   I  A ++F+EM        +VTYTSL++G
Sbjct: 246 DMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSG 305

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295
           LC+   VE++M+L EEM   G+   + T +S+++G CK G   +A   +  M  K  +PN
Sbjct: 306 LCREGKVEDSMKLVEEMEELGLA-TLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPN 364

Query: 296 IVTYSTLLNGLCKEGKLQEAVE-----------------------------------ILD 320
           +VTY+TL++G  + GK++EA                                     +LD
Sbjct: 365 VVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLD 424

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            MK  G+K D   Y  +I   C  G+ ++A   LDEMV  G+ P         R +N ++
Sbjct: 425 EMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKH-------RTYNAII 477

Query: 381 QGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            G C K D   A  + + M       + +T +  +  FCK G + ++  +++E++  G +
Sbjct: 478 NGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLV 537

Query: 440 PDEGTWSAVMTALWDR 455
           P+  T+  + + + ++
Sbjct: 538 PNRITYEIINSGMIEK 553



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 154/306 (50%), Gaps = 14/306 (4%)

Query: 72  LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           LL  +N+         F  +  GY +      A++VF++M++ G      +Y ++++ L 
Sbjct: 248 LLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLC 307

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
            E +++ + +    M E+G+   + +LN ++   CK  G M  A      M  +G  P+ 
Sbjct: 308 REGKVEDSMKLVEEMEELGLA-TLPTLNSVLNGFCKK-GMMVEAEGWVDGMAQKGMKPNV 365

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY TLI+G  RLGK+ EA      M  K  SP V TY  LI G   S        L +E
Sbjct: 366 VTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDE 425

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M+  GV+ ++ TY+ L+  LC  G   +A++LL  M+     P   TY+ ++NG C++G 
Sbjct: 426 MKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGD 485

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISC------FCDIGKYQEAANFLDEMVLGGITPN 365
            + A +I  R++++  K  A     +++C      FC +GK  EA   L+EM+  G+ PN
Sbjct: 486 AKGAHDI--RIRMEKCKKRA----NVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPN 539

Query: 366 RLTWSL 371
           R+T+ +
Sbjct: 540 RITYEI 545



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 77/175 (44%), Gaps = 32/175 (18%)

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
           R+RP+  + + LL  L +  ++  A         + + PD   +  +IS  C  G+ ++A
Sbjct: 148 RYRPSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKA 207

Query: 351 ANFLDEMVLGGITPNRLTW-------------------------------SLHIRIHNTV 379
            +   +M   G+ P+ +T+                               S ++   N +
Sbjct: 208 GDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVL 267

Query: 380 VQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           + G CK ++   A +V+  MR   I  + +TY+SL++  C++G +  S ++V+E+
Sbjct: 268 INGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEM 322



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 36/211 (17%)

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
           AE  +D + ++        + ++  GY R+ +  +A      M   G  P  K+Y  ++ 
Sbjct: 349 AEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLIT 408

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
                   +        M+E G++  + + NVLI ALC   G +  A K+  EM   G  
Sbjct: 409 GFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALC-CKGEVRKAVKLLDEMVEVGLE 467

Query: 189 PDSYTYGTLINGLC-----------------------------------RLGKIYEAKEL 213
           P   TY  +ING C                                   ++GK+ EA  +
Sbjct: 468 PKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVV 527

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
             EM  K   P  +TY  + +G+ +   V +
Sbjct: 528 LNEMLEKGLVPNRITYEIINSGMIEKGYVPD 558


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 211/458 (46%), Gaps = 100/458 (21%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ V+ +M   G +P+ K+Y  ++  L ++   ++     + M ++G++P V +  + I
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICI 269

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF-------- 214
           + L + +G +D A++IFR M + GC PD  TY  LI+ LC  G++  AKELF        
Sbjct: 270 RVLGR-AGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGH 328

Query: 215 ---------------------------KEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                                       +ME     P VVT+T L++ LC+++  +EA  
Sbjct: 329 KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFA 388

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
            F+ MR +G+ PN+ TY++L+ GL + G    A++LL  M S   +P   TY T ++   
Sbjct: 389 TFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFG 448

Query: 308 KEGKLQEAVEILDRMKLQ-----------------------------------GLKPDAG 332
           K G+  +AVE  ++MK +                                   GL PD+ 
Sbjct: 449 KSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSV 508

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT-----------------WSLHIRI 375
            Y  ++ C+  +G+  EA N L EM+  G  P+ +                  W +  R+
Sbjct: 509 TYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRM 568

Query: 376 -----------HNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                      +NT++ GL K     +A +++ SM  +  S +++++++L+ CFCK  ++
Sbjct: 569 KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEV 628

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             + ++  ++ +  C PD  T++ V+  L    K+  A
Sbjct: 629 ELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHA 666



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 142  FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            F +  +++GI P +AS N LI  L +   T + A+ +F++M N GC PD++T+  L+   
Sbjct: 775  FDKFTKKLGISPTLASYNCLIGELLEVHYT-EKAWDLFKDMKNVGCAPDAFTFNMLLAVH 833

Query: 202  CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
             + GKI E  EL+KEM ++ C P  +TY  +I+ L +S ++++A+  F ++ S    P  
Sbjct: 834  GKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTP 893

Query: 262  FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             TY  L+DGL K G   +AM L + M     +PN   ++ L+NG  K G  + A ++  R
Sbjct: 894  RTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKR 953

Query: 322  MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
            M  +G++PD   Y  ++ C C  G+  EA  + +E+   G+ P+ + +       N ++ 
Sbjct: 954  MVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAY-------NRIIN 1006

Query: 382  GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            GL K+     A  +Y  MRNR I  D  TY+SL+      G + ++ R+ +EL L G  P
Sbjct: 1007 GLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEP 1066

Query: 441  DEGTWSAVM 449
            D  T++A++
Sbjct: 1067 DVFTYNALI 1075



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 201/367 (54%), Gaps = 11/367 (2%)

Query: 85   EDIFL-SICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            ED FL  + R   +  R L A ++FDK  K+ G  PT  SY  ++  L+E +  + A+  
Sbjct: 751  EDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDL 810

Query: 143  YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
            ++ M+ +G  P   + N+L+ A+   SG +   F++++EM +R C PD+ TY  +I+ L 
Sbjct: 811  FKDMKNVGCAPDAFTFNMLL-AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLA 869

Query: 203  RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
            +   + +A + F ++ +    PT  TY  LI+GL +   +EEAMRLFEEM   G +PN  
Sbjct: 870  KSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCA 929

Query: 263  TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
             ++ L++G  K G +  A +L + M+++  RP++ +Y+ L++ LC  G++ EA+   + +
Sbjct: 930  IFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNEL 989

Query: 323  KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW-SLHIRIHNTVVQ 381
            K  GL PD   Y +II+      + +EA    +EM   GI P+  T+ SL +   N  + 
Sbjct: 990  KSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLML---NLGLA 1046

Query: 382  GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
            G+ +    +A ++Y  ++   +  D  TY++LI  +    +   +  +   +++DGC P+
Sbjct: 1047 GMVE----QAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102

Query: 442  EGTWSAV 448
             GT++ +
Sbjct: 1103 IGTYAQL 1109



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 219/475 (46%), Gaps = 10/475 (2%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           K   +++  +VL ++++  D  +AL  F S  +E+     H   T + M+  L   ++  
Sbjct: 82  KTEIRVSEDEVLGVLKSMTDPIRALSYFYS-ISEFPTVL-HTTETCNFMLEFLRVHDKVE 139

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
               + + + K+      D +L+I +             V +KM++ G      SY  ++
Sbjct: 140 DMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLI 199

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            +L++      A   YR M   G++P + + + L+ AL K   + +    + +EM + G 
Sbjct: 200 HLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS-EMVMVLLKEMEDLGL 258

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            P+ YT+   I  L R GKI EA E+F+ M+ + C P +VTYT LI+ LC +  +E A  
Sbjct: 259 RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKE 318

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           LF +M++ G +P+   Y +L+D     G      E    M +  + P++VT++ L++ LC
Sbjct: 319 LFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLC 378

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K     EA    D M+ QG+ P+   Y  +I      G+ ++A   LD M   G+ P   
Sbjct: 379 KARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAY 438

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           T+   I             +  +A + +  M+ + I  + +  ++ +    + G + ++ 
Sbjct: 439 TYITFIDYFGK------SGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            + + L  +G  PD  T++ +M       ++ +A  LL   + N C E +V + N
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGC-EPDVIVVN 546



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 163/333 (48%), Gaps = 10/333 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A   FD M++ G  P   +Y T++  L+   +++ A +    M  +G+QP   +    I
Sbjct: 385 EAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFI 444

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K SG    A + F +M  +G  P+       +  L  +G++ EAK +F  +     
Sbjct: 445 DYFGK-SGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGL 503

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P  VTY  ++    +   V+EA+ L  EM   G EP+V   +SL+D L K G   +A +
Sbjct: 504 APDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQ 563

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   M   +  P +VTY+TLL+GL KEG++Q+A+E+ + M  +   P+   +  ++ CFC
Sbjct: 564 MFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFC 623

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
              + + A     +M +    P+ LT+       NTV+ GL K +  N AF  +  ++ +
Sbjct: 624 KNDEVELALKMFSKMTVMDCKPDVLTY-------NTVIYGLIKENKVNHAFWFFHQLK-K 675

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           S+  D +T  +L+    K G I  +  I  + +
Sbjct: 676 SMHPDHVTICTLLPGLVKCGQIGDAISIARDFM 708



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 133/258 (51%), Gaps = 1/258 (0%)

Query: 47   RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
            + D  T++++IS L  +N    A D    +       T   +  +  G  +V R  +AMR
Sbjct: 855  KPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMR 914

Query: 107  VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
            +F++M ++GC+P    +  ++    +    + A + ++ M   GI+P + S  +L+  LC
Sbjct: 915  LFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLC 974

Query: 167  KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
              +G +D A   F E+ + G  PD   Y  +INGL +  ++ EA  L+ EM  +   P +
Sbjct: 975  L-AGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDL 1033

Query: 227  VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
             TY SL+  L  +  VE+A R++EE++  G+EP+VFTY++L+ G         A  + + 
Sbjct: 1034 YTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKN 1093

Query: 287  MISKRHRPNIVTYSTLLN 304
            M+     PNI TY+ L N
Sbjct: 1094 MMVDGCNPNIGTYAQLPN 1111



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 185/424 (43%), Gaps = 10/424 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D+ T+++M+       Q   A +LL  + +  C+    +  S+     +  R  +
Sbjct: 501 NGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDE 560

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++FD+MK+    PT  +Y T+L+ L +E +++ A   +  M      P   S N L+ 
Sbjct: 561 AWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLD 620

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CKN   ++ A K+F +M    C PD  TY T+I GL +  K+  A   F +++ K+  
Sbjct: 621 CFCKND-EVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMH 678

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEE-MRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           P  VT  +L+ GL +   + +A+ +  + M       N   +  LM G        +A+ 
Sbjct: 679 PDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAII 738

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLYGKIISCF 341
             + ++             L+  LCK  +   A +I D+  K  G+ P    Y  +I   
Sbjct: 739 FAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGEL 798

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
            ++   ++A +   +M   G  P+  T+++ + +H               F++Y  M +R
Sbjct: 799 LEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGK------SGKITELFELYKEMISR 852

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D++TY+ +I+   K  ++ K+     +LV     P   T+  ++  L    ++ +A
Sbjct: 853 RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEA 912

Query: 462 AELL 465
             L 
Sbjct: 913 MRLF 916



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 186/438 (42%), Gaps = 80/438 (18%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ ++S L    + + A +L + +  +KC      F ++   + +      A+++F KM
Sbjct: 579 TYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---- 167
               C+P   +Y TV+  L++EN++  AF F+  +++  + P   ++  L+  L K    
Sbjct: 639 TVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK-SMHPDHVTICTLLPGLVKCGQI 697

Query: 168 --------------------------NSGT-----MDAAFKIFREMPNRG-CTPDSYTYG 195
                                       GT     MD A     E+   G C  DS+   
Sbjct: 698 GDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLI- 756

Query: 196 TLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            L+  LC+  +   A ++F +   K   SPT+ +Y  LI  L +    E+A  LF++M++
Sbjct: 757 PLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKN 816

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G  P+ FT++ L+    K G  ++  EL + MIS+R +P+ +TY+ +++ L K   L +
Sbjct: 817 VGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDK 876

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A++    +     +P    YG +I     +G+ +EA    +EM   G             
Sbjct: 877 ALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYG------------- 923

Query: 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
                    CK  PN A                  ++ LI  + K GD   + ++   +V
Sbjct: 924 ---------CK--PNCAI-----------------FNILINGYGKIGDTETACQLFKRMV 955

Query: 435 LDGCLPDEGTWSAVMTAL 452
            +G  PD  +++ ++  L
Sbjct: 956 NEGIRPDLKSYTILVDCL 973


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 177/354 (50%), Gaps = 11/354 (3%)

Query: 111 MKEFG--CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           M E G  C P   +Y TV+    +E  +  A   ++ M + GI P + + + ++ ALCK 
Sbjct: 212 MAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCK- 270

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +  M  A    R+M N+G  PD++TY  LI G    G+  EA  +FKEM   +  P VVT
Sbjct: 271 ARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVT 330

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
              L+  LC+   ++EA  +F+ M  KG  P+VF+Y  +++G    GC     +L  +M+
Sbjct: 331 LNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLML 390

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
                P+I T+S L+      G L +A+ I + M+  G+KPD   Y  +I+  C IGK  
Sbjct: 391 GDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMD 450

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           +A    ++M+  G+ P++  +       + ++QG C      +A ++ L + N  + +D 
Sbjct: 451 DAMEKFNQMIDQGVAPDKYAY-------HCLIQGFCTHGSLLKAKELILEIMNNGMRLDI 503

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           + +SS+I   CK G I  +  I D  V  G  PD   +S +M       KM +A
Sbjct: 504 VFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKA 557



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 210/432 (48%), Gaps = 29/432 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFL------SICRGYG 96
           G   DN T++ +I    S  Q++ A     RV KE  +  I  D+        S+C+ YG
Sbjct: 288 GVLPDNWTYNNLIYGYSSTGQWKEAV----RVFKEMRRHSILPDVVTLNMLMGSLCK-YG 342

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           ++    D   VFD M   G  P   SY  +L     +  L      +  M   GI P + 
Sbjct: 343 KIKEARD---VFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIY 399

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + +VLIKA   N G +D A  IF EM + G  PD  TY T+I  LCR+GK+ +A E F +
Sbjct: 400 TFSVLIKAYA-NCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQ 458

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +  +P    Y  LI G C   S+ +A  L  E+ + G+  ++  +SS+++ LCK G 
Sbjct: 459 MIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGR 518

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
              A  +  + ++    P+ V YS L++G C  GK+++A+ + D M   G++P+  +YG 
Sbjct: 519 IMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGT 578

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL---CKTDPNRAFQ 393
           +++ +C IG+  E  +   EM+  GI P+ +       ++N ++ GL    +T P +   
Sbjct: 579 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTI-------LYNIIIDGLFVAGRTVPAKV-- 629

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
            +  M    I+++  TY+ ++  F K     ++  +  EL       D  T + ++  ++
Sbjct: 630 KFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMF 689

Query: 454 DRRKMRQAAELL 465
             R++ +A +L 
Sbjct: 690 QTRRVEEAKDLF 701



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 169/349 (48%), Gaps = 8/349 (2%)

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
            PT  +Y  ++      ++ +LA  F+  +   G++  +   N L+K  C+   T +A  
Sbjct: 112 SPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALD 171

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA--CSPTVVTYTSLIN 234
            +    P  GC PD ++Y  L+  LC  GK  +A +L + M      CSP VV YT++I+
Sbjct: 172 ILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVID 231

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
              +   V +A  LF+EM  +G+ P++ TYSS++  LCK     +A   L+ M++K   P
Sbjct: 232 CFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLP 291

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           +  TY+ L+ G    G+ +EAV +   M+   + PD      ++   C  GK +EA +  
Sbjct: 292 DNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVF 351

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
           D M + G  P+   +S  I ++    +G C  D    F +   M    I+ D  T+S LI
Sbjct: 352 DTMAMKGQNPD--VFSYKIMLNGYATKG-CLVDMTDLFDL---MLGDGIAPDIYTFSVLI 405

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +   G + K+  I +E+   G  PD  T++ V+ AL    KM  A E
Sbjct: 406 KAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAME 454



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 11/276 (3%)

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
           R    R  +P S+TY  L++   R  +   A   F ++        ++    L+ G C++
Sbjct: 104 RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEA 163

Query: 240 KSVEEAMR-LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH--RPNI 296
           K  +EA+  L       G  P+VF+YS L+  LC  G S QA +LL+MM        P++
Sbjct: 164 KRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDV 223

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           V Y+T+++   KEG + +A ++   M  +G+ PD   Y  ++   C      +A  FL +
Sbjct: 224 VAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQ 283

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           MV  G+ P+  T+       N ++ G   T     A +V+  MR  SI  D +T + L+ 
Sbjct: 284 MVNKGVLPDNWTY-------NNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMG 336

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             CK G I ++  + D + + G  PD  ++  ++  
Sbjct: 337 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNG 372



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 138/322 (42%), Gaps = 1/322 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
            +G   D  TFS++I    +      A  + + +           + ++     R+ +  
Sbjct: 391 GDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMD 450

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DAM  F++M + G  P   +Y  ++        L  A      +   G++  +   + +I
Sbjct: 451 DAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSII 510

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK    MDA   IF    N G  PD+  Y  L++G C +GK+ +A  +F  M +   
Sbjct: 511 NNLCKLGRIMDAQ-NIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 569

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VV Y +L+NG C+   ++E + LF EM  KG++P+   Y+ ++DGL   G +  A  
Sbjct: 570 EPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKV 629

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
               M       N  TY+ +L G  K     EA+ +   ++   +K D      +I+   
Sbjct: 630 KFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMF 689

Query: 343 DIGKYQEAANFLDEMVLGGITP 364
              + +EA +    +   G+ P
Sbjct: 690 QTRRVEEAKDLFASISRSGLVP 711



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 128/271 (47%), Gaps = 28/271 (10%)

Query: 210 AKELFKEMETKA-----CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           A  LF    ++A      SPT  TY  L++   ++   E A+  F ++   G+  ++   
Sbjct: 94  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIA 153

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHR-------PNIVTYSTLLNGLCKEGKLQEAVE 317
           + L+ G C+   + +A+++L       HR       P++ +YS LL  LC +GK  +A +
Sbjct: 154 NHLLKGFCEAKRTDEALDILL------HRTPELGCVPDVFSYSILLKSLCDQGKSGQADD 207

Query: 318 ILDRMKLQGL--KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           +L  M   G    PD   Y  +I CF   G   +A +   EMV  GI P+ +T+S     
Sbjct: 208 LLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYS----- 262

Query: 376 HNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
             +VV  LCK       + +L  M N+ +  D+ TY++LI  +   G   ++ R+  E+ 
Sbjct: 263 --SVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR 320

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
               LPD  T + +M +L    K+++A ++ 
Sbjct: 321 RHSILPDVVTLNMLMGSLCKYGKIKEARDVF 351



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 5/256 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRV--NKEKCDITEDIFLSICRGYGRVHRPL 102
           G   D   +  +I    +      A++L+  +  N  + DI    F SI     ++ R +
Sbjct: 463 GVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIV--FFSSIINNLCKLGRIM 520

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  +FD     G  P    Y  ++       +++ A R +  M   GI+P V     L+
Sbjct: 521 DAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLV 580

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G +D    +FREM  +G  P +  Y  +I+GL   G+   AK  F EM     
Sbjct: 581 NGYCK-IGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGI 639

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +    TY  ++ G  +++  +EA+ LF+E+R+  V+ ++ T ++++ G+ +     +A +
Sbjct: 640 AINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKD 699

Query: 283 LLQMMISKRHRPNIVT 298
           L   +      P +VT
Sbjct: 700 LFASISRSGLVPCVVT 715



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 46/236 (19%)

Query: 245 AMRLFEEMRSKGVEPNVF-----TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
           A+ LF    S+   P V      TY+ LMD   +      A+     ++    R +I+  
Sbjct: 94  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIA 153

Query: 300 STLLNGLCKEGKLQEAVEIL-DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
           + LL G C+  +  EA++IL  R    G  PD   Y  ++   CD GK  +A + L  M 
Sbjct: 154 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 213

Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            GG                     +C                   S D + Y+++I CF 
Sbjct: 214 EGG--------------------AVC-------------------SPDVVAYTTVIDCFF 234

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           K+GD++K+  +  E+V  G  PD  T+S+V+ AL   R M + AE  L +++NK V
Sbjct: 235 KEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGK-AEAFLRQMVNKGV 289


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 156/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM + G  P+  T+ TLI+G C+ G++  A E++ +M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 168/319 (52%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           V+  L++    KL + FY    E G    +   N+L+ +  K  G +  A  +F  +   
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE-GEIRLAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  +LG + E   L   M+     P V TY+ LINGLC+   +++A
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM   G+ PN  T+++L+DG CK G    AME+   M+S+   P+++TY+TL+ G
Sbjct: 226 NELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A ++ D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  +
Sbjct: 286 LCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKG
Sbjct: 346 XVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG +P
Sbjct: 396 DVWTGSKLLKEMQRDGYVP 414



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 152/275 (55%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++   + G+I  A+ +F  +      P+VV++ +L+NG  +   ++E  RL   
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A EL   M+     PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A +  DEM + G+ P+++T++ 
Sbjct: 257 VDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYT- 315

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK  D   AF+    M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  P+ GT++ ++     +  +   ++LL
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E      + D Y +  LI      G + +A E ++  +        
Sbjct: 43  KGKGSASAVFAAJLETKGTQIS-DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPF 101

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   +I  L + K  +     +EE    G   +++ ++ LM    K G    A  +   
Sbjct: 102 DTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDA 161

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I+  C   K
Sbjct: 162 ITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+S 
Sbjct: 222 MDDANELFDEMLDNGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYXQMLSQSLSP 274

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           D +TY++LI   CKKGD+ ++  + DE+ + G  PD+ T++ ++
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLI 318


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 199/372 (53%), Gaps = 13/372 (3%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED--IFLSICRGYGRVHRPLDA 104
           R +  T++ +I+   S  + + A D++ R  +E+  I  +   + ++  G+ +V R  +A
Sbjct: 182 RPNAVTYNTVIAGFCSRGRVQAALDIM-REMRERGGIAPNQYTYGTVISGWCKVGRVDEA 240

Query: 105 MRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           ++VFD+M   G  +P    Y  ++    ++ +L  A  +   M E G+   VA+ N+L+ 
Sbjct: 241 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 300

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL  + G    A+++  EM  +G   D +TY  LING C+ G + +A E+F+ M  +   
Sbjct: 301 ALFMD-GRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR 359

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            TVVTYTSLI  L +   V+E  +LF+E   +G+ P++  Y++L++     G   +A E+
Sbjct: 360 ATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEI 419

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M  KR  P+ VTY+TL+ GLC  G++ EA +++D M  +G++PD   Y  +IS +  
Sbjct: 420 MGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSM 479

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402
            G  ++A    +EM+  G  P  LT+       N ++QGLCK    + A  +   M    
Sbjct: 480 KGDVKDALRIRNEMMNKGFNPTLLTY-------NALIQGLCKNGQGDDAENMVKEMVENG 532

Query: 403 ISVDSLTYSSLI 414
           I+ D  TY SLI
Sbjct: 533 ITPDDSTYISLI 544



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 206/422 (48%), Gaps = 19/422 (4%)

Query: 38  ATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93
           A A +A+ FR       +TF++M+  L SA +   A +LL ++ +        +    C 
Sbjct: 138 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFC- 196

Query: 94  GYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-I 151
             GRV   LD MR   +M+E  G  P   +Y TV++   +  ++  A + +  M   G +
Sbjct: 197 SRGRVQAALDIMR---EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 253

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
           +P     N LI   C + G +D A      M  RG      TY  L++ L   G+  EA 
Sbjct: 254 KPEAVMYNALIGGYC-DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 312

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
           EL +EM  K  +  V TY  LING C+  +V++A+ +FE M  +GV   V TY+SL+  L
Sbjct: 313 ELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYAL 372

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
            K G   +  +L    + +  RP++V Y+ L+N     G +  A EI+  M+ + + PD 
Sbjct: 373 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 432

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNR 390
             Y  ++   C +G+  EA   +DEM   GI P+ +T+       NT++ G   K D   
Sbjct: 433 VTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTY-------NTLISGYSMKGDVKD 485

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           A ++   M N+  +   LTY++LI   CK G    +  +V E+V +G  PD+ T+ +++ 
Sbjct: 486 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 545

Query: 451 AL 452
            L
Sbjct: 546 GL 547



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 174/323 (53%), Gaps = 10/323 (3%)

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEA 210
           +P   + N +I   C + G + AA  I REM  RG   P+ YTYGT+I+G C++G++ EA
Sbjct: 182 RPNAVTYNTVIAGFC-SRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 240

Query: 211 KELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            ++F EM TK    P  V Y +LI G C    ++ A+   + M  +GV   V TY+ L+ 
Sbjct: 241 VKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 300

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            L   G  ++A EL++ M  K    ++ TY+ L+NG CKEG +++A+EI + M  +G++ 
Sbjct: 301 ALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 360

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
               Y  +I      G+ QE     DE V  GI P+ + ++  I  H+T        + +
Sbjct: 361 TVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHST------SGNID 414

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           RAF++   M  + I+ D +TY++L+   C  G + ++ +++DE+   G  PD  T++ ++
Sbjct: 415 RAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLI 474

Query: 450 TALWDRRKMRQAAELLLLELMNK 472
           +    +  ++ A   +  E+MNK
Sbjct: 475 SGYSMKGDVKDALR-IRNEMMNK 496



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 136/259 (52%), Gaps = 1/259 (0%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           +T++L++  L    +   A +L++ +  +   +    +  +  G+ +      A+ +F+ 
Sbjct: 293 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFEN 352

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M   G   T  +Y +++  L ++ Q++   + +      GI+P +   N LI +    SG
Sbjct: 353 MSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS-HSTSG 411

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +D AF+I  EM  +   PD  TY TL+ GLC LG++ EA++L  EM  +   P +VTY 
Sbjct: 412 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYN 471

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LI+G      V++A+R+  EM +KG  P + TY++L+ GLCK G    A  +++ M+  
Sbjct: 472 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 531

Query: 291 RHRPNIVTYSTLLNGLCKE 309
              P+  TY +L+ GL  E
Sbjct: 532 GITPDDSTYISLIEGLTTE 550



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 30/271 (11%)

Query: 210 AKELFKEMET--KACSPTVV------TYTSLINGLCQSKSV----EEAMRLFEEMRSKGV 257
           A  LFK   +  KA SP  V        +SL N L  + +       ++RL+  M+S  +
Sbjct: 60  ALALFKSALSADKALSPLAVLPHLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSL 119

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
             +  +   L+  L     S+ A  L   M   R      T++ +L  LC  GK   A+E
Sbjct: 120 PISTASLHPLLSALP----SAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALE 175

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM-VLGGITPNRLTWSLHIRIH 376
           +L +M     +P+A  Y  +I+ FC  G+ Q A + + EM   GGI PN+ T+       
Sbjct: 176 LLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYG------ 225

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            TV+ G CK    + A +V+  M  +  +  +++ Y++LI  +C +G +  +    D +V
Sbjct: 226 -TVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMV 284

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G      T++ ++ AL+   +  +A EL+
Sbjct: 285 ERGVAMTVATYNLLVHALFMDGRGTEAYELV 315



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 4/192 (2%)

Query: 10  STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA 69
           +T +T   ++  +  +  V +   +FD A      G R D   ++ +I+   ++     A
Sbjct: 360 ATVVTYTSLIYALSKKGQVQETDKLFDEAVRR---GIRPDLVLYNALINSHSTSGNIDRA 416

Query: 70  EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
            +++  + K++    +  + ++ RG   + R  +A ++ D+M + G +P   +Y T+++ 
Sbjct: 417 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISG 476

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
              +  +K A R    M   G  P + + N LI+ LCKN G  D A  + +EM   G TP
Sbjct: 477 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN-GQGDDAENMVKEMVENGITP 535

Query: 190 DSYTYGTLINGL 201
           D  TY +LI GL
Sbjct: 536 DDSTYISLIEGL 547


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 157/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A  +F EM ++G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 205/430 (47%), Gaps = 57/430 (13%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++Q++ + K    A  +F +A  E     R D   FS +I+  + +   R A +      
Sbjct: 35  LIQIVVSRKGKGSASAVF-AAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTK 93

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE------PTPKSYITVLAI-L 130
           + K  +  D     CR   +V   L  ++ F  +  F  E      P    +  +L    
Sbjct: 94  EHKFRVPFDT----CR---KVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGF 146

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V+E +++LA   +  + + G++P V S N L+    K  G ++  F++   M   G  PD
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIK-LGDLNEGFRLKNAMQASGVQPD 205

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YTY  LINGLC+  K+ +A  LF EM  K   P  VT+T+LI+G C++  V+ AM +++
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M S+ + P++ TY++L+ GLCK G   QA +L+  MI K  +P+ +TY+TL++G CKEG
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEG 325

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L+ A E   RM  + ++ D   Y  +IS  C  G+  +A   L EM+  G+ P      
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------ 379

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                                              +  TY+ +I  FCKKGD+   ++++
Sbjct: 380 -----------------------------------EIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 431 DELVLDGCLP 440
            E+  DG  P
Sbjct: 405 KEMQRDGYKP 414



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 154/275 (56%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++G  + G+I  A+ +F  +      P+VV++ +L+NG  +   + E  RL   
Sbjct: 137 YFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A  L   M+ K   PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +DEM++ G+ P+++T++ 
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYT- 315

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK  D   AF+    M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  P+ GT++ ++     +  +   ++LL
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 140/285 (49%), Gaps = 11/285 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           K  G+  A F    E   +G    D Y +  LI      G + +A E ++  +       
Sbjct: 43  KGKGSASAVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVP 100

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             T   ++  L + K  +     +EE    G   +++ ++ LM G  K G    A  +  
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFD 160

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I+  C   
Sbjct: 161 AITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKES 220

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
           K  +A    DEM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+S
Sbjct: 221 KMDDANVLFDEMLDKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++LI   CKKGD+ ++  ++DE+++ G  PD+ T++ ++
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLI 318


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 215/422 (50%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   + +TF++++         + A ++++ +++         +  +  G+ +  R  +A
Sbjct: 262 GLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEA 321

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           MR+ ++M+     P   +Y T++    E    +  F+    M   G++P   + NV++K 
Sbjct: 322 MRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKW 381

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K  G MD   K  R+M   GC PD  TY TLI+  C++GK+ EA  L  EM  K    
Sbjct: 382 FVK-KGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKM 440

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT  +++  LC+ + ++EA  L    R +G   +  +Y +L+ G  K   +SQA+ L 
Sbjct: 441 DDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLW 500

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  K   P+I+TY++++ GLC+ GK  +A++ LD +   GL PD   Y  II  +C  
Sbjct: 501 DEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQE 560

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSI 403
           G+ ++A  F ++MV     P+ +T        NT++ GLCK     +A +++ +  ++  
Sbjct: 561 GQVEKAFQFHNKMVEKNFKPDVVTC-------NTLLCGLCKEGMLEKALKLFNTWISKGK 613

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            VD+++Y+++I   CK+    ++  +++E+      PD  T++A++  L D  +M+ A E
Sbjct: 614 DVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEE 673

Query: 464 LL 465
            +
Sbjct: 674 FI 675



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 201/398 (50%), Gaps = 33/398 (8%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILV---EENQLKLAFRFYRHMREIGIQPCVA 156
           RP  A ++F++MK  G +PT  +  T+L  LV     + ++L+   +    +IG++    
Sbjct: 139 RPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTN 198

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           S N+LI   C  +     A ++  +M + GC PD+ TY T+++GLC+ G++ EA++L  +
Sbjct: 199 SFNILIHGSCMEN-RFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLD 257

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M+ K   P   T+  L+ G C+   ++EA  + E M    V P+ +TY+ ++ G CK G 
Sbjct: 258 MKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGR 317

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
            ++AM L + M + +  P++VTY+TL+NG  + G  +E  ++++ M+ +G+KP++  Y  
Sbjct: 318 IAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNV 377

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH-------------------- 376
           ++  F   GK  E    + +M   G  P+ +T++  I  H                    
Sbjct: 378 MVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKG 437

Query: 377 --------NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                   NT+++ LC+    + A  +  S R R   VD ++Y +LI  + K     ++ 
Sbjct: 438 LKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQAL 497

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           R+ DE+     +P   T+++++  L    K  QA + L
Sbjct: 498 RLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKL 535



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 11/300 (3%)

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE---AKELFKEMETKACSPTV 226
           G    A +IF  M   G  P   T  TL+N L R    +    +K +F +          
Sbjct: 138 GRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINT 197

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            ++  LI+G C      EA+R+  +MR  G  P+  TY++++DGLCK G  ++A +LL  
Sbjct: 198 NSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLD 257

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M +K   PN  T++ L+ G C+ G L+EA  +++ M    + PDA  Y  +IS FC  G+
Sbjct: 258 MKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGR 317

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISV 405
             EA    +EM    ++P+ +T+       NT++ G  +   +   F++   M  R +  
Sbjct: 318 IAEAMRLREEMENLKLSPDVVTY-------NTLINGCFEHGSSEEGFKLIEEMEGRGMKP 370

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +S+TY+ ++  F KKG + +  + V ++   GCLPD  T++ +++      KM +A  L+
Sbjct: 371 NSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLM 430



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 145/292 (49%), Gaps = 34/292 (11%)

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK-- 167
           KM+E GC P   +Y T+++   +  ++  AFR    M   G++    +LN +++ALC+  
Sbjct: 397 KMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRER 456

Query: 168 ----------------------NSGTM----------DAAFKIFREMPNRGCTPDSYTYG 195
                                 + GT+            A +++ EM  +   P   TY 
Sbjct: 457 KLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYN 516

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           ++I GLC++GK  +A +   E+      P  +TY ++I+G CQ   VE+A +   +M  K
Sbjct: 517 SMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEK 576

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
             +P+V T ++L+ GLCK G   +A++L    ISK    + V+Y+T++  LCKE +  EA
Sbjct: 577 NFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEA 636

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
            ++L+ M+ + L PD   Y  I+    D G+ ++A  F+ ++   G + N+ 
Sbjct: 637 FDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSENQF 688



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 48/305 (15%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D+ T + M+  L    +   A DLL    +    + E  + ++  GY +  +   A
Sbjct: 437 GLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQA 496

Query: 105 MRVFDKMKE-----------------------------------FGCEPTPKSYITVLAI 129
           +R++D+MKE                                    G  P   +Y T++  
Sbjct: 497 LRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHG 556

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
             +E Q++ AF+F+  M E   +P V + N L+  LCK  G ++ A K+F    ++G   
Sbjct: 557 YCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCK-EGMLEKALKLFNTWISKGKDV 615

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D+ +Y T+I  LC+  +  EA +L +EME K   P   TY +++ GL  +  +++A    
Sbjct: 616 DAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFI 675

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
            ++  KG   N F    L  G  +   +S+        I +   PN + YS  +N LC +
Sbjct: 676 SKIAEKGKSENQF----LELGKRQDARTSE--------IPQEPHPNAIAYSNKINELCSQ 723

Query: 310 GKLQE 314
           G+ ++
Sbjct: 724 GRYKD 728



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISC---FCDIGKYQEAANFLDEMVLGGITPNR 366
           G+  +A +I +RMK  G++P       +++    F      + +     + +  G+  N 
Sbjct: 138 GRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKIN- 196

Query: 367 LTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
            T S +I IH + ++         A +V   MR+     D++TY++++   CKKG ++++
Sbjct: 197 -TNSFNILIHGSCMENRF----GEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEA 251

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             ++ ++   G  P+  T++ ++        +++AA ++ L   N  V
Sbjct: 252 RDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVV 299


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 203/411 (49%), Gaps = 12/411 (2%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T  T   +L  +     V +A+ +F       A+G   D   ++ M+  L  A + R AE
Sbjct: 141 TAFTYTALLHGLCGAGMVREAMSVF---AGMQADGCAPDPHVYATMVHGLCGAGRTREAE 197

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            LL     E  +    ++ ++  GY  V     A+ VF++M   GC P  ++Y  +++  
Sbjct: 198 TLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGF 257

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
            +  +L  A   +  M + G+ P V +   LI+  C + G +D A+++ + M N G  P+
Sbjct: 258 CKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSD-GQLDCAYRLLQSMENSGLVPN 316

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            +T   LI+ LC+  ++ EA+ L   +  K      + YTSLI+GLC++     A RL +
Sbjct: 317 EWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQ 376

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
            + S+G  P+  TYSSL+DGLC+    S+AM +L  M+ K  +P+ VTY+ +++ L +E 
Sbjct: 377 TLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREV 436

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
               + +ILD+M   G+KPD   Y   +  +C  G+ ++A + +  MV  G+ PN +T+ 
Sbjct: 437 GADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTY- 495

Query: 371 LHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
                 N ++ G       ++AF  +  M       +  +Y+ L+    KK
Sbjct: 496 ------NALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKK 540



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 197/429 (45%), Gaps = 7/429 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  D+  ++  +     A     A  L   +    C  T   + ++  G        +A
Sbjct: 102 GFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREA 161

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M VF  M+  GC P P  Y T++  L    + + A          G +P V   N LI  
Sbjct: 162 MSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDG 221

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C N G ++ A  +F  M   GC+P+  TY  LI+G C+  K+  A  LF  M      P
Sbjct: 222 YC-NVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVP 280

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTYT+LI G C    ++ A RL + M + G+ PN +T S L+D LCK     +A  LL
Sbjct: 281 NVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLL 340

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             +I K  + N + Y++L++GLCK G+   A  ++  +  QG  PDA  Y  +I   C  
Sbjct: 341 GSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQ 400

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
            +  EA   LD+M+  G+ P+ +T+++   I + +V+   +   + + ++   M    I 
Sbjct: 401 KELSEAMLVLDDMMEKGVQPSPVTYTI---IIDELVR---EVGADGSKKILDKMIAAGIK 454

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D  TY+  +  +C +G +  +  ++  +V  G  P+  T++A++    +     QA   
Sbjct: 455 PDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFST 514

Query: 465 LLLELMNKC 473
               + N C
Sbjct: 515 FKHMVANGC 523



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 179/356 (50%), Gaps = 10/356 (2%)

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
           ++Y T++        L  + R    +   G  P   +    +   C+ +G +  A ++F 
Sbjct: 73  RTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCR-AGLLAHACRLFV 131

Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
            MP RGC   ++TY  L++GLC  G + EA  +F  M+   C+P    Y ++++GLC + 
Sbjct: 132 LMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAG 191

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
              EA  L  +  ++G EPNV  Y++L+DG C  G    A+++ + M      PN+ TY+
Sbjct: 192 RTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYT 251

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            L++G CK  KL  A+ +  RM   GL P+   Y  +I   C  G+   A   L  M   
Sbjct: 252 ELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENS 311

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL-SMRNRSISVDSLTYSSLITCFCK 419
           G+ PN  T S+       ++  LCK +     Q+ L S+  + I V+ + Y+SLI   CK
Sbjct: 312 GLVPNEWTCSV-------LIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCK 364

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
            G    + R++  LV  G +PD  T+S+++  L  ++++ +A  L+L ++M K V+
Sbjct: 365 AGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAM-LVLDDMMEKGVQ 419



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 159/319 (49%), Gaps = 14/319 (4%)

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           LN  + AL ++    D      R MP R    +  TY TLIN  C  G +  +K     +
Sbjct: 44  LNAFLMALARHRMLADMESFASR-MPAR----NLRTYTTLINAYCLAGDLPASKRHLSSL 98

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                +P    YTS + G C++  +  A RLF  M  +G     FTY++L+ GLC  G  
Sbjct: 99  LRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMV 158

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +AM +   M +    P+   Y+T+++GLC  G+ +EA  +L     +G +P+  +Y  +
Sbjct: 159 REAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNAL 218

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I  +C++G  + A +  + M + G +PN       +R +  ++ G CK+   +RA  ++ 
Sbjct: 219 IDGYCNVGDLELAVDVFERMDVNGCSPN-------VRTYTELISGFCKSRKLDRAMMLFS 271

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M +  +  + +TY++LI   C  G +  + R++  +   G +P+E T S ++ AL    
Sbjct: 272 RMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHE 331

Query: 457 KMRQAAELLLLELMNKCVE 475
           ++ + A+LLL  L+ K ++
Sbjct: 332 RVGE-AQLLLGSLIQKGIK 349



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/541 (20%), Positives = 206/541 (38%), Gaps = 128/541 (23%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A GF  +   ++ +I    +      A D+ +R++   C      +  +  G+ +  +  
Sbjct: 205 AEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLD 264

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            AM +F +M + G  P   +Y  ++     + QL  A+R  + M   G+ P   + +VLI
Sbjct: 265 RAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLI 324

Query: 163 KALCKN----------------------------------SGTMDAAFKIFREMPNRGCT 188
            ALCK+                                  +G   AA ++ + + ++G  
Sbjct: 325 DALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFV 384

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL------------ 236
           PD++TY +LI+GLCR  ++ EA  +  +M  K   P+ VTYT +I+ L            
Sbjct: 385 PDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKI 444

Query: 237 -----------------------CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
                                  C    +E+A  +   M   GV PN+ TY++L+ G   
Sbjct: 445 LDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYAN 504

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLL------------------------------ 303
            G +SQA    + M++   +PN  +Y+ LL                              
Sbjct: 505 LGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHG 564

Query: 304 ---------------------NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
                                  LC+  +L EA  +L  M+   L P   +Y  II+C C
Sbjct: 565 LLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCC 624

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
            +    EA  F+D MV  G  P        +  +  ++  LC+      A QV+  M ++
Sbjct: 625 RLKMLTEALTFVDSMVKSGYIP-------QLESYRHIISSLCEEGSIQTAKQVFGDMLSK 677

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             + + + +  LI    +KG + + + ++  +      P +  ++ +   + D   +++ 
Sbjct: 678 EYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYARLTGKITDANDIQEI 737

Query: 462 A 462
           A
Sbjct: 738 A 738


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 215/451 (47%), Gaps = 51/451 (11%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHR 100
           A+G R +   ++ +I   +  ++F  A  +L  + ++   I  DIF   S+  G  +  R
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ--GIAPDIFCYNSLIIGLSKAKR 502

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A     +M E G +P   +Y   ++  +E ++   A ++ + MRE G+ P       
Sbjct: 503 MDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTG 562

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   CK    ++A    +R M ++G   D+ TY  L+NGL +  K+ +A+E+F+EM  K
Sbjct: 563 LINEYCKKGKVIEAC-SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +P V +Y  LING  +  ++++A  +F+EM  +G+ PNV  Y+ L+ G C+ G   +A
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  M  K   PN VTY T+++G CK G L EA  + D MKL+GL PD+ +Y  ++  
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 341 FCDI----------------------------------GKYQEAANFLDEMVLGGI---- 362
            C +                                  GK +     L+ ++ G      
Sbjct: 742 CCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            PN +T+       N ++  LCK  +   A +++  M+N ++    +TY+SL+  + K G
Sbjct: 802 KPNDVTY-------NIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMG 854

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
              +   + DE +  G  PD   +S ++ A 
Sbjct: 855 RRAEMFPVFDEAIAAGIEPDHIMYSVIINAF 885



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 127/486 (26%), Positives = 215/486 (44%), Gaps = 54/486 (11%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           ++  E  + KA  +FD   A   +G       ++ +I         R   +LL  + K  
Sbjct: 356 VMSKEGVMEKAKALFDGMIA---SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRN 412

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
             I+   + ++ +G         A  +  +M   GC P    Y T++   ++ ++   A 
Sbjct: 413 IVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAM 472

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT---- 196
           R  + M+E GI P +   N LI  L K +  MD A     EM   G  P+++TYG     
Sbjct: 473 RVLKEMKEQGIAPDIFCYNSLIIGLSK-AKRMDEARSFLVEMVENGLKPNAFTYGAFISG 531

Query: 197 -------------------------------LINGLCRLGKIYEAKELFKEMETKACSPT 225
                                          LIN  C+ GK+ EA   ++ M  +     
Sbjct: 532 YIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGD 591

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             TYT L+NGL ++  V++A  +F EMR KG+ P+VF+Y  L++G  K G   +A  +  
Sbjct: 592 AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+ +   PN++ Y+ LL G C+ G++++A E+LD M ++GL P+A  Y  II  +C  G
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSIS 404
              EA    DEM L G+ P+         ++ T+V G C+  D  RA  ++     +  +
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSF-------VYTTLVDGCCRLNDVERAITIF-GTNKKGCA 763

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL-----PDEGTWSAVMTALWDRRKMR 459
             +  +++LI    K G       +++ L +DG       P++ T++ ++  L     + 
Sbjct: 764 SSTAPFNALINWVFKFGKTELKTEVLNRL-MDGSFDRFGKPNDVTYNIMIDYLCKEGNLE 822

Query: 460 QAAELL 465
            A EL 
Sbjct: 823 AAKELF 828



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 204/446 (45%), Gaps = 54/446 (12%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG----YGRVH 99
           NG + +  T+   IS  + A++F  A+  +  +   +C +  +  L  C G    Y +  
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEM--RECGVLPNKVL--CTGLINEYCKKG 571

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           + ++A   +  M + G     K+Y  ++  L + +++  A   +R MR  GI P V S  
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYG 631

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           VLI    K  G M  A  IF EM   G TP+   Y  L+ G CR G+I +AKEL  EM  
Sbjct: 632 VLINGFSK-LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC------- 272
           K   P  VTY ++I+G C+S  + EA RLF+EM+ KG+ P+ F Y++L+DG C       
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750

Query: 273 --------KGGCSSQAM-----------------------ELLQMMISKRHRPNIVTYST 301
                   K GC+S                           L+     +  +PN VTY+ 
Sbjct: 751 AITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           +++ LCKEG L+ A E+  +M+   L P    Y  +++ +  +G+  E     DE +  G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 362 ITPNRLTWSLHIRI---HNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
           I P+ + +S+ I          + L   D   A          SIS    T  +L++ F 
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSIS----TCRALLSGFA 926

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGT 444
           K G++  + ++++ +V    +PD  T
Sbjct: 927 KVGEMEVAEKVMENMVRLQYIPDSAT 952



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 207/450 (46%), Gaps = 13/450 (2%)

Query: 21  LIRAEKDVNKALVIFDSA----TAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           L + EK+   A +  D A     +    G      T+ ++I  L    +   A+ LL  +
Sbjct: 244 LFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEM 303

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           +     +    +  +  G  +      A  +  +M   G    P  Y   + ++ +E  +
Sbjct: 304 DSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVM 363

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           + A   +  M   G+ P   +   LI+  C+    +   +++  EM  R      YTYGT
Sbjct: 364 EKAKALFDGMIASGLIPQAQAYASLIEGYCREK-NVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++ G+C  G +  A  + KEM    C P VV YT+LI    Q+    +AMR+ +EM+ +G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           + P++F Y+SL+ GL K     +A   L  M+    +PN  TY   ++G  +  +   A 
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           + +  M+  G+ P+  L   +I+ +C  GK  EA +    MV  GI  +  T+++     
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV----- 597

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             ++ GL K D  + A +++  MR + I+ D  +Y  LI  F K G++ K++ I DE+V 
Sbjct: 598 --LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE 655

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +G  P+   ++ ++       ++ +A ELL
Sbjct: 656 EGLTPNVIIYNMLLGGFCRSGEIEKAKELL 685



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 156/331 (47%), Gaps = 26/331 (7%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ KA  IFD    E   G   +   +++++     + +   A++LLD ++ +       
Sbjct: 642 NMQKASSIFDEMVEE---GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAV 698

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + +I  GY +     +A R+FD+MK  G  P    Y T++      N ++ A   +   
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758

Query: 147 REIGIQPCVASLNVLIKALCKNSGT----------MDAAFKIFREMPNRGCTPDSYTYGT 196
           ++ G     A  N LI  + K   T          MD +F       +R   P+  TY  
Sbjct: 759 KK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSF-------DRFGKPNDVTYNI 810

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +I+ LC+ G +  AKELF +M+     PTV+TYTSL+NG  +     E   +F+E  + G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-----RPNIVTYSTLLNGLCKEGK 311
           +EP+   YS +++   K G +++A+ L+  M +K       + +I T   LL+G  K G+
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGE 930

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           ++ A ++++ M      PD+    ++I+  C
Sbjct: 931 MEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 130/337 (38%), Gaps = 64/337 (18%)

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAK---------------------------------- 211
           G + D   +G L +G    G I EA                                   
Sbjct: 146 GKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLF 205

Query: 212 -ELFKEMETKACSPTVVTYTSLINGLCQSKSVE---------------------EAMRLF 249
            +++K M  +     V TY  LI   C++ +V+                      A++L 
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           E M  KG+ P  +TY  L+DGLCK      A  LL  M S     +  TYS L++GL K 
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
                A  ++  M   G+     +Y   I      G  ++A    D M+  G+ P    +
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 370 SLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +       ++++G C+    R  +++ + M+ R+I +   TY +++   C  GD+  +  
Sbjct: 386 A-------SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYN 438

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           IV E++  GC P+   ++ ++       +   A  +L
Sbjct: 439 IVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 109/262 (41%), Gaps = 29/262 (11%)

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           V +  L +G      +EEA+ +F       + P +     L+D L +        ++ + 
Sbjct: 152 VLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKG 211

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL---------------------DRMKLQ 325
           M+ +    ++ TY  L+   C+ G +Q   ++L                     + M  +
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICK 271

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GL P    Y  +I   C I + ++A + L EM   G++ +  T+SL       ++ GL K
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL-------LIDGLLK 324

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             + + A  +   M +  I++    Y   I    K+G + K+  + D ++  G +P    
Sbjct: 325 GRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA 384

Query: 445 WSAVMTALWDRRKMRQAAELLL 466
           +++++      + +RQ  ELL+
Sbjct: 385 YASLIEGYCREKNVRQGYELLV 406


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/405 (29%), Positives = 201/405 (49%), Gaps = 11/405 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDK 110
           ++  +IS L  +++   A  L D++  +        FLS   G       LDA   +  K
Sbjct: 123 SYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAALLSK 182

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI-QPCVASLNVLIKALCKNS 169
             +FGC     +Y  ++   +   +++ A   +    + G   P V S NV IK +C+  
Sbjct: 183 APQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQ-V 241

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTVVT 228
           G +  A ++   M   GC+PD+ T   L+ GLCR+ ++   +E+ + ++    C P VVT
Sbjct: 242 GDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVT 301

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YTS+I+G C+S  +E+AM ++ +M   G  PN  TY+ L++G  K G    A+ + Q MI
Sbjct: 302 YTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMI 361

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +R  P++VT+STL++G C+ G+L +A+     M    ++P+A  +  II  FC   +  
Sbjct: 362 LRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSA 421

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           EA  FL E+ +      R   +    I N V+  LCK    + A  + + M  +    D 
Sbjct: 422 EALRFLKELNM------RTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDK 475

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            TY+ LI   C KG I ++    +++V  GC PD  T ++ +  L
Sbjct: 476 YTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCL 520



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 153/327 (46%), Gaps = 11/327 (3%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---IT 84
           V  A+ +F+         +  D  +F++ I  +      + A +L++R+ +  C    +T
Sbjct: 208 VQDAVALFEGWIQ--GGAYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVT 265

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFG-CEPTPKSYITVLAILVEENQLKLAFRFY 143
            +I +    G  RV        V  +++  G C P   +Y +V++   +  +++ A   Y
Sbjct: 266 NNILVG---GLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVY 322

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
             M   G  P   + NVLI    K +G M +A  ++++M  R C PD  T+ TLI+G CR
Sbjct: 323 NDMIGCGTTPNAVTYNVLINGYGK-AGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCR 381

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVF 262
            G++ +A   + EM      P   T++ +I   C+     EA+R  +E+  +  + P  F
Sbjct: 382 CGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAF 441

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
             + ++D LCKGG   +A  +L  M  K  RP+  TY+ L+ G C +G++ EA+   ++M
Sbjct: 442 ICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKM 501

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQE 349
              G  PD+      I C    G   E
Sbjct: 502 VDTGCSPDSITVNSFIGCLLKAGMPSE 528



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 157/331 (47%), Gaps = 14/331 (4%)

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCR 203
           H  ++ I P   S   +I  LC++S   DA  K+F +M ++ G  P++     L      
Sbjct: 111 HSSQLAIPPSAHSYRYVISMLCQSSRHTDA-LKLFDQMTDQSGHFPNARFLSFLAGSCAN 169

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV-EPNVF 262
            G +  A  L  +     C      Y  L+N       V++A+ LFE     G   P+V+
Sbjct: 170 AGFLDAAAALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVW 229

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           +++  + G+C+ G   +A+EL++ M      P+ VT + L+ GLC+  ++    E+L R+
Sbjct: 230 SFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRL 289

Query: 323 KLQGL-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           +  G+  P+   Y  +IS +C  G+ ++A    ++M+  G TPN +T+       N ++ 
Sbjct: 290 QRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTY-------NVLIN 342

Query: 382 GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           G  K  +   A  VY  M  R    D +T+S+LI  +C+ G +  + R   E+      P
Sbjct: 343 GYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQP 402

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           +  T+S ++ +    ++ R A  L  L+ +N
Sbjct: 403 NAHTFSIIILSFC--KQNRSAEALRFLKELN 431



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 139/313 (44%), Gaps = 10/313 (3%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           WS  +    V Q+     DV KAL + +   AE+  G   D  T ++++  L    +   
Sbjct: 229 WSFNVAIKGVCQV----GDVQKALELVER-MAEF--GCSPDTVTNNILVGGLCRVKEVSR 281

Query: 69  AEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
             ++L R+ ++  C      + S+  GY +  R  DAM V++ M   G  P   +Y  ++
Sbjct: 282 GREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLI 341

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
               +   +  A   Y+ M      P V + + LI   C+  G +D A + + EM     
Sbjct: 342 NGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCR-CGQLDDAMRTWTEMSQYQI 400

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAM 246
            P+++T+  +I   C+  +  EA    KE+  +   +P       +I+ LC+   V+EA 
Sbjct: 401 QPNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEAN 460

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            +  EM  KG  P+ +TY+ L+ G C  G  S+A+     M+     P+ +T ++ +  L
Sbjct: 461 LILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCL 520

Query: 307 CKEGKLQEAVEIL 319
            K G   E   I+
Sbjct: 521 LKAGMPSEVDRIM 533



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 124/269 (46%), Gaps = 15/269 (5%)

Query: 212 ELFKEMETK--ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLM 268
           +LF  + +   A  P+  +Y  +I+ LCQS    +A++LF++M  + G  PN    S L 
Sbjct: 105 QLFSALHSSQLAIPPSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLA 164

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG-- 326
                 G    A  LL              Y+ L+N     G++Q+AV + +   +QG  
Sbjct: 165 GSCANAGFLDAAAALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGW-IQGGA 223

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             PD   +   I   C +G  Q+A   ++ M   G +P+ +T       +N +V GLC+ 
Sbjct: 224 YSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVT-------NNILVGGLCRV 276

Query: 387 -DPNRAFQVYLSMRNRSISVDSL-TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
            + +R  +V   ++   + + ++ TY+S+I+ +CK G +  +  + ++++  G  P+  T
Sbjct: 277 KEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVT 336

Query: 445 WSAVMTALWDRRKMRQAAELLLLELMNKC 473
           ++ ++        M  A  +    ++ +C
Sbjct: 337 YNVLINGYGKAGNMGSAVAVYQQMILRRC 365


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 153/261 (58%), Gaps = 1/261 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    MR  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A  +F EM + G  P+  T+ TLI+G C+ G++  A +++++M  +  S
Sbjct: 215 GLCKES-RMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A EL
Sbjct: 274 PDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFEL 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L+ GLC+EG+  +A ++L  M   GLKPD   Y  I++ FC 
Sbjct: 334 RERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITP 364
            G  ++A+  L EM   G  P
Sbjct: 394 KGDVKKASELLREMQRNGRVP 414



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 196/415 (47%), Gaps = 31/415 (7%)

Query: 47  RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC-DITEDIFLSICRGYGRVHRPL--- 102
           RH   ++  MI  L +   F  A+ L+  V   K  D    +F +I    G     +   
Sbjct: 10  RHTLQSYCTMIHFLCTHQMFLEAKSLIQTVVSRKGKDSASAVFAAILETKGTQRSDIYVF 69

Query: 103 --------------DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
                         DA+  F   K+        +   VL  L++    KL + FY+ + E
Sbjct: 70  SGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILE 129

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G    +   N+L+   CK  G M  A  +F  +   G  P   ++ TL+NG  +LG + 
Sbjct: 130 CGYPASLYFFNILMHRFCK-EGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           E   L   M      P V TY+ LINGLC+   ++EA  LF EM   G+ PN  T+++L+
Sbjct: 189 EGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLI 248

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DG CK G    AM++ + M+++   P++VTY+TL+ GLCK+G L++A  +LD M  +GLK
Sbjct: 249 DGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLK 308

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           PD   Y  +I   C  G  + A    + M+   I  + +       ++  ++ GLC+   
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDV-------VYTALIFGLCQ--E 359

Query: 389 NRAFQVYLSMRNR---SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            RA      +R      +  D  TY+ ++  FCKKGD+ K++ ++ E+  +G +P
Sbjct: 360 GRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 160/289 (55%), Gaps = 8/289 (2%)

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
            ++E+   G     Y +  L++  C+ G++  A+ +F  +      P+VV++ +L+NG  
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           +   ++E  RL   MR+ GV+P+V+TYS L++GLCK     +A  L   M+     PN V
Sbjct: 183 KLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGV 242

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           T++TL++G CK G+L  A++I  +M  QG  PD   Y  +I   C  G  ++A   LDEM
Sbjct: 243 TFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEM 302

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITC 416
              G+ P+++T++       T++ G CK  D   AF++   M   SI +D + Y++LI  
Sbjct: 303 SRKGLKPDKITYT-------TLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFG 355

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            C++G    + +++ E++  G  PD+ T++ +M     +  +++A+ELL
Sbjct: 356 LCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELL 404



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 145/307 (47%), Gaps = 11/307 (3%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCT--PDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           LI+ +    G  D+A  +F  +     T   D Y +  LI      G I +A E F+  +
Sbjct: 35  LIQTVVSRKGK-DSASAVFAAILETKGTQRSDIYVFSGLITAYLESGFIRDAIECFRLTK 93

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
             +      T  +++  L + K  +     ++E+   G   +++ ++ LM   CK G   
Sbjct: 94  KHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMR 153

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A  +   +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I
Sbjct: 154 LAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLI 213

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           +  C   +  EA     EM+  G+ PN +T++       T++ G CK    + A  +Y  
Sbjct: 214 NGLCKESRMDEANGLFGEMLDNGLVPNGVTFT-------TLIDGHCKNGRLDLAMDIYRQ 266

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M N+  S D +TY++LI   CKKGD+ ++  ++DE+   G  PD+ T++ ++        
Sbjct: 267 MLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGD 326

Query: 458 MRQAAEL 464
           +  A EL
Sbjct: 327 LETAFEL 333



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 130/281 (46%), Gaps = 36/281 (12%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +     + R A+ + D + K     +   F ++  GY ++    +  R+ + M+
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMR 198

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M + G+ P   +   LI   CKN G +
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKN-GRL 257

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A  I+R+M N+G +PD  TY TLI GLC+ G + +A+ L  EM  K   P  +TYT+L
Sbjct: 258 DLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTL 317

Query: 233 I-----------------------------------NGLCQSKSVEEAMRLFEEMRSKGV 257
           I                                    GLCQ     +A ++  EM   G+
Sbjct: 318 IDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGL 377

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +P+  TY+ +M+  CK G   +A ELL+ M      P +VT
Sbjct: 378 KPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVPCVVT 418


>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 554

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 222/447 (49%), Gaps = 21/447 (4%)

Query: 35  FDSATAEYAN----GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DITE-DI 87
           FD A   Y+     GF   + T+S  I+ L     F   ++LL  +    C  DI   +I
Sbjct: 60  FDLANHYYSQMGTRGFSLSSFTYSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNI 119

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +L +    GR+     A+ VF+K+ + G +P   +Y  ++  + +  +   A +F+R M 
Sbjct: 120 YLHLLFVEGRIDL---ALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMI 176

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGK 206
             G  P   +   ++  LC +   +D A+++  ++   G     +  Y  LI+G CR G+
Sbjct: 177 HKGFSPDNKACGAIVVGLC-DGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGR 235

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           I +A+ +   M    C P +VTY   +N  C    +++A +L + M   G+EP+V++Y+ 
Sbjct: 236 IDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQ 295

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+ G+CKG C  +A  L+   +  +   ++V+Y+T++   CK G    A ++ + M  +G
Sbjct: 296 LLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKG 355

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           + PD   +   I  F   G +  A   LD+M   G++P+ + ++       T++  LCK+
Sbjct: 356 IPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYT-------TIIDHLCKS 408

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
                A  ++  M  + IS D +++++LI  FCK   + ++  + +E+   G  PDE T+
Sbjct: 409 GKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTY 468

Query: 446 SAVMTALWDRRKMRQAAELLLLELMNK 472
             ++  L + +K+  A  ++  ++M+K
Sbjct: 469 KLIIGGLIEEKKISIAC-MVWGQMMDK 494



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 189/386 (48%), Gaps = 20/386 (5%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I+ S   GY +      A++VFD+M +  C      Y   + +L+  ++  LA  +Y  M
Sbjct: 11  IYRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQM 70

Query: 147 REIGIQPCVASLNVLIKALC--KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
              G      + +  I  LC  KN   +D   ++  +M    C PD + +   ++ L   
Sbjct: 71  GTRGFSLSSFTYSRFITGLCKVKNFTFID---ELLHDMETLNCLPDIWAFNIYLHLLFVE 127

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G+I  A E+F+++      P VVTYT +I+G+C+ K  + A++ + +M  KG  P+    
Sbjct: 128 GRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKAC 187

Query: 265 SSLMDGLCKGGCSSQAMEL-LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
            +++ GLC G     A EL + +M S R + + + Y+ L++G C+ G++ +A  I   M+
Sbjct: 188 GAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMR 247

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
             G +PD   Y   ++ FCD     +A   L  M   GI P+  ++       N +++G+
Sbjct: 248 RNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSY-------NQLLKGI 300

Query: 384 CKTD-PNRAFQVYLSMRNRSIS---VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
           CK + P++A   YL M N+       D ++Y+++I  FCK GD   + ++ +E+   G  
Sbjct: 301 CKGNCPDKA---YLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIP 357

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           PD  T++  + A   +     A +LL
Sbjct: 358 PDVVTFTIFIKAFLGKGSFNIAKKLL 383



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 207/439 (47%), Gaps = 13/439 (2%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           ++KA+ +FD  +      F  D + F   I  L++ ++F  A     ++      ++   
Sbjct: 25  IDKAVQVFDEMSQSNCRVFSIDYNRF---IGVLINHSRFDLANHYYSQMGTRGFSLSSFT 81

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +     G  +V        +   M+   C P   ++   L +L  E ++ LA   +  + 
Sbjct: 82  YSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIV 141

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + G +P V +  ++I  +CK     D A + +R+M ++G +PD+   G ++ GLC   K+
Sbjct: 142 KNGRKPDVVTYTIIIHGVCKIK-KFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKV 200

Query: 208 YEAKELFKE-METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
             A EL  + M++     + + Y +LI+G C++  +++A  +   MR  G EP++ TY+ 
Sbjct: 201 DLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNV 260

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL-DRMKLQ 325
            ++  C       A +LL++M      P++ +Y+ LL G+CK     +A  ++ ++M  +
Sbjct: 261 FLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPK 320

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GL  D   Y  II  FC IG    A    +EM   GI P+ +T+++ I+        L K
Sbjct: 321 GL-CDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAF------LGK 373

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
              N A ++   M    +S D + Y+++I   CK G +  +  I  ++V  G  PD  ++
Sbjct: 374 GSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISF 433

Query: 446 SAVMTALWDRRKMRQAAEL 464
           +A++       ++ +A  L
Sbjct: 434 NALINGFCKCSRVSEAMHL 452



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 161/345 (46%), Gaps = 6/345 (1%)

Query: 35  FDSATAEYAN----GFRHDNSTFSLMISKLVSANQFRPAEDLL-DRVNKEKCDITEDIFL 89
           FD+A   + +    GF  DN     ++  L    +   A +L+ D +   +  ++  ++ 
Sbjct: 165 FDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYN 224

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  G+ R  R   A  +   M+  GCEP   +Y   L    +E  L  A +  + M   
Sbjct: 225 ALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERS 284

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           GI+P V S N L+K +CK +    A   +  +M  +G   D  +Y T+I   C++G    
Sbjct: 285 GIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLC-DVVSYNTIIKAFCKIGDTTS 343

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A +LF+EM  K   P VVT+T  I       S   A +L ++M   G+ P+   Y++++D
Sbjct: 344 AYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIID 403

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            LCK G    A  +   M+ +   P++++++ L+NG CK  ++ EA+ + + M+ +G  P
Sbjct: 404 HLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYP 463

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           D   Y  II    +  K   A     +M+  G T +R      IR
Sbjct: 464 DEVTYKLIIGGLIEEKKISIACMVWGQMMDKGFTLDRAIAQTLIR 508



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 141/293 (48%), Gaps = 12/293 (4%)

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y + I G  + G I +A ++F EM    C    + Y   I  L      + A   + +M 
Sbjct: 12  YRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQMG 71

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           ++G   + FTYS  + GLCK    +   ELL  M +    P+I  ++  L+ L  EG++ 
Sbjct: 72  TRGFSLSSFTYSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEGRID 131

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            A+E+ +++   G KPD   Y  II   C I K+  A  F  +M+  G +P+        
Sbjct: 132 LALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDN------- 184

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
           +    +V GLC     + A+++ +  M++  + + +L Y++LI+ FC+ G I K+  I  
Sbjct: 185 KACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKS 244

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC-VEAEVDIQNQ 483
            +  +GC PD  T++  +    D   +  A +  LL+LM +  +E +V   NQ
Sbjct: 245 FMRRNGCEPDLVTYNVFLNYFCDELMLDDAKK--LLKLMERSGIEPDVYSYNQ 295



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 1/184 (0%)

Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181
           SY T++    +      A++ +  M + GI P V +  + IKA     G+ + A K+  +
Sbjct: 327 SYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFL-GKGSFNIAKKLLDQ 385

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           M   G +PD   Y T+I+ LC+ GK+  A  +F +M  +  SP V+++ +LING C+   
Sbjct: 386 MTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSR 445

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           V EAM L+EEM+++G  P+  TY  ++ GL +    S A  +   M+ K    +     T
Sbjct: 446 VSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMMDKGFTLDRAIAQT 505

Query: 302 LLNG 305
           L+ G
Sbjct: 506 LIRG 509


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 158/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  +D A ++F EM + G  P+S ++ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC++  +++A  L  EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  + EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY    E G    +   N+L+ + CK  G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKE-GEIRLAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  +LG + E   L   M+     P V TY+ LINGLC+   +++A
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM   G+ PN  ++++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK G L++A ++++ M ++GLKPD   Y  +I   C  G  + A  +   M+   I  +
Sbjct: 286 LCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKG
Sbjct: 346 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG +P
Sbjct: 396 DVWTGSKLMKEMQRDGYVP 414



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 202/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRK-------------GKG------SAS 49

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYR----HMREIGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR    H   +    C   
Sbjct: 50  AVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKV 107

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E    G     Y +  L++  C+ G+I  A+ +F  +
Sbjct: 108 LEHLMKL-----KYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAI 162

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                 P+VV++ +L+NG  +   + E  RL   M++ GV+P+V+TYS L++GLCK    
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKL 222

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+     PN V+++TL++G CK+G++  A+EI  +M  Q L PD   Y  +
Sbjct: 223 DDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + ++EM + G+ P+++T++       T++ G CK  D   AF+   
Sbjct: 283 IYGLCKNGDLKQAQDLINEMSMKGLKPDKITYT-------TLIDGSCKEGDLETAFEYRK 335

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  P+ GT++ ++     + 
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395

Query: 457 KMRQAAELL 465
            +   ++L+
Sbjct: 396 DVWTGSKLM 404



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 132/251 (52%), Gaps = 9/251 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L++  C+   +  A  +F+ +   G+ P+V ++++LM+G  K G  ++   L   M 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +   +P++ TYS L+NGLCKE KL +A E+ D M   GL P++  +  +I   C  G+  
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVD 258

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A     +M+   ++P+ +T+       NT++ GLCK  D  +A  +   M  + +  D 
Sbjct: 259 LAMEIYKQMLSQSLSPDLITY-------NTLIYGLCKNGDLKQAQDLINEMSMKGLKPDK 311

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TY++LI   CK+GD+  +      ++ +    D+  ++A+++ L    +    AE +L 
Sbjct: 312 ITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGR-SVDAEKMLR 370

Query: 468 ELMNKCVEAEV 478
           E+++  ++ E+
Sbjct: 371 EMLSVGLKPEI 381


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 205/441 (46%), Gaps = 80/441 (18%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
           R  R    +  F  M + G  P   +Y T++    +   L  A      MRE G+ P   
Sbjct: 67  RAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTF 126

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           + N L+  LC+ +G + AA  +F +MP R G   D Y+Y  LI GLC  G+I +A  +F 
Sbjct: 127 TYNCLMLGLCR-AGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFA 185

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           +M    C P V TYT L++GLC+ + V EA  L  EM +KGV PNV TY++L+ GLC+ G
Sbjct: 186 KMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEG 245

Query: 276 CSSQAMELLQMMISKRHRPN-----------------------------------IVTYS 300
                 +LL+ M  +RH P+                                   ++TY+
Sbjct: 246 RFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYN 305

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            L+NG CK G ++ A+++L  MK   + P    + ++I  FC  GK  +A  FL +M   
Sbjct: 306 ALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGA 365

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTD------------------PNR------------ 390
           G++PN +T+       N+++ G C                     P+R            
Sbjct: 366 GLSPNTVTF-------NSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCD 418

Query: 391 ------AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
                 A  ++  +  + I   ++ Y+SL+  +C+ GDI  +  +++++  + C+PD  T
Sbjct: 419 EGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHT 478

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           ++ ++  L   +++ +A +LL
Sbjct: 479 YNTLIDGLCKVKRLDRAIDLL 499



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 184/371 (49%), Gaps = 10/371 (2%)

Query: 93  RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ 152
           +G     R  DA RVF KM    C P   +Y  +L  L +  ++  A      M   G+ 
Sbjct: 169 KGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVV 228

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P V + N LI  LC+  G  D   K+  +M  +  +PD +TY  +++GLC+ GK+    +
Sbjct: 229 PNVVTYNALIGGLCQ-EGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAK 287

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +  E   K  +  V+TY +LING C+   ++ A+ + + M+   V P V T++ ++ G C
Sbjct: 288 VLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFC 347

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
            GG   +AM  L  M      PN VT+++L++G C  G+ + A+ +LD M+  G+ PD  
Sbjct: 348 CGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQ 407

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRA 391
            Y   I   CD G+ +EA +    + + GI         H  I+ ++V G C+  D + A
Sbjct: 408 TYAIFIDALCDEGQLEEAHSLFSCLPMKGIKA-------HNVIYTSLVHGYCQVGDIDSA 460

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           F +   M + +   D  TY++LI   CK   + ++  ++D++   G  P   T++ ++  
Sbjct: 461 FGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQ 520

Query: 452 -LWDRRKMRQA 461
            LWD++    A
Sbjct: 521 MLWDKKHADAA 531



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 211/480 (43%), Gaps = 55/480 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEK----CDITEDIFLSICRGYGRVHRPLDAMRV 107
           T++ +I  L    +F     LL+++  ++    C     +   +C+ +G+V       +V
Sbjct: 233 TYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCK-HGKVGH---GAKV 288

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
             +    G      +Y  ++    +   +K A    + M+   + P V + N +I   C 
Sbjct: 289 LHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFC- 347

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
             G +  A     +M   G +P++ T+ +LI+G C +G+   A  L   ME     P   
Sbjct: 348 CGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQ 407

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY   I+ LC    +EEA  LF  +  KG++ +   Y+SL+ G C+ G    A  L++ M
Sbjct: 408 TYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKM 467

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
            S+   P++ TY+TL++GLCK  +L  A+++LD+MK QG++P    +  +I       K+
Sbjct: 468 ASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKH 527

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHI------------------------------RIHN 377
            +AA   ++M+  G  P++ T++L I                                +N
Sbjct: 528 ADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVFPDVETYN 587

Query: 378 TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI-----HKSARIVD 431
            +++         +AF  ++ M +  I  D  TYS L+   C K D       K  ++VD
Sbjct: 588 AIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVD 647

Query: 432 -----ELVLDGC----LPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
                EL    C     P   T+ A++  L ++ ++ +  E LLL++    +  + D+ +
Sbjct: 648 VRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEE-VEWLLLKMQGNSILLDEDMSD 706



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 174/422 (41%), Gaps = 25/422 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T+++ I  L    Q   A  L   +  +       I+ S+  GY +V     A
Sbjct: 401 GVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSA 460

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + +KM    C P   +Y T++  L +  +L  A      M++ GI+P   + N+LIK 
Sbjct: 461 FGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQ 520

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK--ELFKEMETKAC 222
           +  +    DAA K++ +M + GC PD  TY   I+     G   E        EM     
Sbjct: 521 MLWDKKHADAA-KMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGV 579

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS---- 278
            P V TY ++I     +   E+A     +M S  ++P+  TYS L++ +C    S     
Sbjct: 580 FPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDN 639

Query: 279 ----------QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
                        EL + M      P I TY  LL GLC + +L+E   +L +M+   + 
Sbjct: 640 EKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQGNSIL 699

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D 387
            D  +   ++ C+C++  Y+EA      M      P   +  L       ++ GLC + D
Sbjct: 700 LDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCL-------LLSGLCDSGD 752

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
              A  ++  M     + D + +  LI C  +KG       ++  +    C+    T+++
Sbjct: 753 HGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMDAKKCVASTRTYAS 812

Query: 448 VM 449
           ++
Sbjct: 813 LV 814



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 120/261 (45%), Gaps = 9/261 (3%)

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
           F  M      P   TY +LIN  C+   + +A      MR  G+ P+ FTY+ LM GLC+
Sbjct: 78  FGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCR 137

Query: 274 GGCSSQAMELLQMMISKRHR-PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
            G  + A  L   M  +     +  +Y+ L+ GLC  G++ +A  +  +M     +P   
Sbjct: 138 AGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVH 197

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
            Y  ++   C + +  EA   L EMV  G+ PN +T+       N ++ GLC+    +  
Sbjct: 198 TYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTY-------NALIGGLCQEGRFDDV 250

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            ++   M  +  S D  TY+ ++   CK G +   A+++ E +  G   +  T++A++  
Sbjct: 251 TKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALING 310

Query: 452 LWDRRKMRQAAELLLLELMNK 472
                 M+ A ++L L   N+
Sbjct: 311 YCKGGDMKAALDVLQLMKRNR 331


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 180/364 (49%), Gaps = 10/364 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+  F KM      P  K +  +  I+V+           +H+  +GI+P V +L ++I 
Sbjct: 55  ALSFFHKMVVMNPLPREKDFTKLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTLTIIIN 114

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC  + T+   F +   M   G  P   T+ TLINGLC  G +  A      +E     
Sbjct: 115 CLCHLNHTV-FGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGHQ 173

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN-VFTYSSLMDGLCKGGCSSQAME 282
               TY ++INGLC++     A+   E+++ +  + + V  YS++MD LCK G   +A+ 
Sbjct: 174 SNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALN 233

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M SK  +P++V Y++L++GLC  G+ +EA  +L  M  +G+ P+   +  ++  FC
Sbjct: 234 LFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFC 293

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNR 401
             G    A   +  MV  G+ P+ +T+       N+V+ G C  +    A +V+  M ++
Sbjct: 294 KDGMISRAKTIMGFMVHVGVEPDVVTY-------NSVISGHCLLSQMGDAVKVFELMIHK 346

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               + +TYSSLI  +CK  +I+K+  ++ E+V  G  PD  TWS ++       K   A
Sbjct: 347 GFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAA 406

Query: 462 AELL 465
            EL 
Sbjct: 407 KELF 410



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 202/418 (48%), Gaps = 10/418 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +I+ L +      A    D +           + +I  G  +      A+   +K+
Sbjct: 143 TFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKI 202

Query: 112 KEFGCE-PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           K   C+     +Y T++  L ++  +  A   +  M   GIQP + + N LI  LC N G
Sbjct: 203 KGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLC-NFG 261

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
               A  +   M  +G  P+  T+  L++  C+ G I  AK +   M      P VVTY 
Sbjct: 262 RWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYN 321

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           S+I+G C    + +A+++FE M  KG  PN+ TYSSL+ G CK    ++A+ LL  M++ 
Sbjct: 322 SVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNS 381

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              P++VT+STL+ G CK GK + A E+   M      P+      I+        + EA
Sbjct: 382 GLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEA 441

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
            +   EM        ++   L++ I+N V+ G+C     N A +++  + ++ I +D + 
Sbjct: 442 ISLFREM-------EKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVA 494

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           Y+++I   CK+G +  +  ++ ++  +GCLP+E T++  +  L  R  + ++ + LLL
Sbjct: 495 YTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLL 552



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 189/411 (45%), Gaps = 45/411 (10%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              V   M + G +PT  ++ T++  L  E  +  A RF   + ++G Q    +   +I 
Sbjct: 125 GFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIIN 184

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSY-TYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            LCK +G    A     ++  R C  D    Y T+++ LC+ G + EA  LF  M +K  
Sbjct: 185 GLCK-AGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGI 243

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P +V Y SLI+GLC     +EA  L   M  KG+ PNV T++ L+D  CK G  S+A  
Sbjct: 244 QPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKT 303

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           ++  M+     P++VTY+++++G C   ++ +AV++ + M  +G  P+   Y  +I  +C
Sbjct: 304 IMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWC 363

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
                 +A   L EMV  G+ P+ +TWS       T++ G CK   P  A +++ +M   
Sbjct: 364 KTKNINKALFLLGEMVNSGLNPDVVTWS-------TLIGGFCKAGKPEAAKELFCTMHEH 416

Query: 402 ---------SISVDSL----TYSSLITCFCKKGDIHKSARIV-DELVLDG---------- 437
                    +I +D L     +S  I+ F +   ++    +V   +VLDG          
Sbjct: 417 DQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDA 476

Query: 438 -----CLPDEG------TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
                CLP +G       ++ ++  L     +  A  LL+    N C+  E
Sbjct: 477 QELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNE 527



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 203/456 (44%), Gaps = 57/456 (12%)

Query: 5   TMFKWS---TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV 61
            MFK     T +T A ++  + AE +V +A    DS       G + ++ T+  +I+ L 
Sbjct: 131 VMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDM---GHQSNSYTYGAIINGLC 187

Query: 62  SANQFRPAEDLLDRVNKEKCDIT-----EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116
            A     A   L+++    CD+        I  S+C+  G V    +A+ +F  M   G 
Sbjct: 188 KAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKD-GMV---CEALNLFSGMTSKGI 243

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS------- 169
           +P   +Y +++  L    + K A     +M   GI P V + NVL+   CK+        
Sbjct: 244 QPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKT 303

Query: 170 ---------------------------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
                                        M  A K+F  M ++G  P+  TY +LI+G C
Sbjct: 304 IMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWC 363

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           +   I +A  L  EM     +P VVT+++LI G C++   E A  LF  M      PN+ 
Sbjct: 364 KTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQ 423

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T + ++DGL K    S+A+ L + M       N+V Y+ +L+G+C  GKL +A E+   +
Sbjct: 424 TCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCL 483

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
             +G+K D   Y  +I   C  G   +A N L +M   G  PN  T+       N  V+G
Sbjct: 484 PSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTY-------NVFVRG 536

Query: 383 LC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
           L  + D +R+ +  L M+ + +S D+ T   LI+ F
Sbjct: 537 LLQRYDISRSTKYLLLMKGKGLSADATTTELLISYF 572



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 9/228 (3%)

Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
           KS E A+  F +M      P    ++ L   + K    +  + L++ + S   +P++ T 
Sbjct: 50  KSEEAALSFFHKMVVMNPLPREKDFTKLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTL 109

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + ++N LC          +L  M   G+ P    +  +I+  C  G    AA F D +  
Sbjct: 110 TIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLED 169

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVD-SLTYSSLITCF 417
            G   N  T+         ++ GLCK        +YL  ++ R+  +D  + YS+++   
Sbjct: 170 MGHQSNSYTYG-------AIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSL 222

Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           CK G + ++  +   +   G  PD   +++++  L +  + ++A  LL
Sbjct: 223 CKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLL 270



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 21/232 (9%)

Query: 26  KDVNKALVIFDSATAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLL-------DRVN 77
           K++NKAL +      E  N G   D  T+S +I     A +   A++L           N
Sbjct: 366 KNINKALFLL----GEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPN 421

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
            + C I  D       G  +     +A+ +F +M++   E     Y  VL  +    +L 
Sbjct: 422 LQTCAIILD-------GLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLN 474

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A   +  +   GI+  V +   +IK LCK  G +D A  +  +M   GC P+ +TY   
Sbjct: 475 DAQELFSCLPSKGIKIDVVAYTTMIKGLCK-EGLLDDAENLLMKMEENGCLPNEFTYNVF 533

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           + GL +   I  + +    M+ K  S    T   LI+    +K    A+ +F
Sbjct: 534 VRGLLQRYDISRSTKYLLLMKGKGLSADATTTELLISYFSANKE-NSALHVF 584


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 172/319 (53%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY    E G    +   N+L+ + CK  G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKE-GEIRLAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  +LG + E   L   M+     P V TY+ LINGLC+   +++A
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM   G+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    + ++  TY+ +I  FCKKG
Sbjct: 346 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKLEIGTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG +P
Sbjct: 396 DVWTGSKLMKEMQRDGYVP 414



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 157/265 (59%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM + G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            ++MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLK + G Y  II+ FC 
Sbjct: 334 RKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  + EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 152/275 (55%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++  C+ G+I  A+ +F  +      P+VV++ +L+NG  +   + E  RL   
Sbjct: 137 YFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A EL   M+     PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +DEM + G+ P+++T++ 
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT- 315

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK  D   AF+    M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G   + GT++ ++     +  +   ++L+
Sbjct: 370 REMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLM 404



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 11/292 (3%)

Query: 161 LIKALCKNSGTMDAAFKIFRE-MPNRGCT-PDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           LI+ +    G  D+A  +F   +  RG    D Y +  LI      G + +A E  +  +
Sbjct: 35  LIQIVVSRKGK-DSASAVFAAILETRGTQRSDIYVFSGLITAYLESGFLRDAIECXRLTK 93

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                    T   ++  L + K  +     +EE    G   +++ ++ LM   CK G   
Sbjct: 94  EHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIR 153

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A  +   +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I
Sbjct: 154 LAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
           +  C   K  +A    DEM+  G+ PN +T++       T++ G CK    + A ++Y  
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQ 266

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           M ++S+S D +TY++LI   CKKGD+ ++  ++DE+ + G  PD+ T++ ++
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 131/251 (52%), Gaps = 9/251 (3%)

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  L++  C+   +  A  +F+ +   G+ P+V ++++LM+G  K G  ++   L   M 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
           +   +P++ TYS L+NGLCKE K+ +A E+ D M   GL P+   +  +I   C  G+  
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
            A     +M+   ++P+ +T+       NT++ GLCK  D  +A  +   M  + +  D 
Sbjct: 259 LAMEIYKQMLSQSLSPDLITY-------NTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
           +TY++LI   CK+GD+  +      ++ +    D+  ++A+++ L    +    AE +L 
Sbjct: 312 ITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGR-SVDAEKMLR 370

Query: 468 ELMNKCVEAEV 478
           E+++  ++ E+
Sbjct: 371 EMLSVGLKLEI 381



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 122/272 (44%), Gaps = 39/272 (14%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           D+N+    F    A  A+G + D  T+S++I+ L   ++                     
Sbjct: 186 DLNEG---FRLKNAMQASGVQPDVYTYSVLINGLCKESKMD------------------- 223

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
                           DA  +FD+M + G  P   ++ T++    +  ++ LA   Y+ M
Sbjct: 224 ----------------DANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
               + P + + N LI  LCK  G +  A  +  EM  +G  PD  TY TLI+G C+ G 
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKK-GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGD 326

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A E  K M  +      V YT+LI+GLCQ     +A ++  EM S G++  + TY+ 
Sbjct: 327 LETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTM 386

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +++  CK G      +L++ M    + P++VT
Sbjct: 387 IINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 25/242 (10%)

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T+ +Y ++I+ LC  + + EA  L + + S+                 KG  S+ A+   
Sbjct: 12  TLQSYCTMIHFLCTHQMLPEAKTLIQIVVSR-----------------KGKDSASAVFAA 54

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
            +      R +I  +S L+    + G L++A+E     K    +       K++     +
Sbjct: 55  ILETRGTQRSDIYVFSGLITAYLESGFLRDAIECXRLTKEHKFRVPFDTCRKVLEHLMKL 114

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ-VYLSMRNRSI 403
             ++    F +E +  G       +   +   N ++   CK    R  Q V+ ++    +
Sbjct: 115 KYFKLVWGFYEESLECG-------YPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGL 167

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
               +++++L+  + K GD+++  R+ + +   G  PD  T+S ++  L    KM  A E
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANE 227

Query: 464 LL 465
           L 
Sbjct: 228 LF 229


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 220/460 (47%), Gaps = 49/460 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +++          A  LL R+ ++    T+  + ++   + R+     A
Sbjct: 238 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQA 297

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ-PCVASLNVLIK 163
            +V + M  +G EP  ++Y  +   L +  ++  AFR    M  +G   P V + N L+ 
Sbjct: 298 TKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVD 357

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A  K   + DA  ++  EM ++G  P   T+  ++  LC+ GK+ EA    +++  +  +
Sbjct: 358 ACFKWRCSSDA-LRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLA 416

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+TY +LI+  C++ +V +A  L +EM  KG++ + FT ++++  LCK      A EL
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEEL 476

Query: 284 LQ-----------------------------------MMISKRHRPNIVTYSTLLNGLCK 308
           L                                     MI ++  P+I TY+TL+ GLC+
Sbjct: 477 LHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCR 536

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
             +L+EA++ L+    +GL PD   Y  II  +C  G  + A  F ++MV     P+ +T
Sbjct: 537 MERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVT 596

Query: 369 WSLHIRIHNTVVQGLC---KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
                   NT++ GLC   K D  +A +++ S   +   VD +TY++LI   CK GD+  
Sbjct: 597 C-------NTLMNGLCLHGKLD--KALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDT 647

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +    D++ + G  PD  T++ V++AL +  +  +A  +L
Sbjct: 648 ALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNML 687



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 176/351 (50%), Gaps = 10/351 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+     M+ FG  P   +Y T+L     +  L  A      M+  GI P   + N L+
Sbjct: 226 DALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLV 285

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  +  G +  A K+   M   G  PD  TY  L  GLC+ GK+ EA  L  EME    
Sbjct: 286 SAFAR-LGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGT 344

Query: 223 S-PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           + P VVTY +L++   + +   +A+RL EEMR KGV+P + T++ ++  LCK G   +A+
Sbjct: 345 ALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEAL 404

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
             L+ +  +   P+++TY+TL++  CK G + +A  ++D M  +GLK D      ++   
Sbjct: 405 GKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNL 464

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C + +Y++A   L      G  P+ +++        TV+    K  +P  A +++  M  
Sbjct: 465 CKMKRYEDAEELLHSPPQRGFVPDEVSY-------GTVMAAYFKEYNPEPALRLWDQMIE 517

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           R +     TY++LI   C+   + ++   ++E V  G +PDE T++ ++ A
Sbjct: 518 RKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHA 568



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 161/326 (49%), Gaps = 18/326 (5%)

Query: 147 REIGIQPCVASLNVLIKALCKNSGTM-DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           R  G++P + + N ++ AL ++  T+  A+  +FR +      P+ YT+  L++  C  G
Sbjct: 163 RRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKG 222

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + +A      M+    SP  VTY +L+N  C+   + EA  L   M+  G+ P   TY+
Sbjct: 223 TLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYN 282

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+    + G   QA ++++ M +    P++ TY+ L  GLC+ GK+ EA  + D M+  
Sbjct: 283 TLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERL 342

Query: 326 GLK-PDAGLYGKII-SCF---CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           G   PD   Y  ++ +CF   C      +A   L+EM   G+ P  +T       HN VV
Sbjct: 343 GTALPDVVTYNTLVDACFKWRCS----SDALRLLEEMRDKGVKPTLVT-------HNIVV 391

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
           + LCK      A      +    ++ D +TY++LI  +CK G++ K+  ++DE+V  G  
Sbjct: 392 KSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLK 451

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
            D  T + V+  L   ++   A ELL
Sbjct: 452 MDTFTLNTVLYNLCKMKRYEDAEELL 477



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/518 (24%), Positives = 220/518 (42%), Gaps = 104/518 (20%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA---EDLLDRVNKEKCDI- 83
           + +A  + +S TA    GF  D  T++++   L  A +   A   +D ++R+     D+ 
Sbjct: 294 IKQATKVVESMTA---YGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVV 350

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           T +  +  C  + R     DA+R+ ++M++ G +PT  ++  V+  L +E +L+ A    
Sbjct: 351 TYNTLVDACFKW-RCSS--DALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKL 407

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM--------------------- 182
             + E G+ P V + N LI A CK +G +  AF +  EM                     
Sbjct: 408 EKIAEEGLAPDVITYNTLIDAYCK-AGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCK 466

Query: 183 --------------PNRGCTPDSYTYGT-------------------------------- 196
                         P RG  PD  +YGT                                
Sbjct: 467 MKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSIST 526

Query: 197 ---LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
              LI GLCR+ ++ EA +   E   K   P   TY  +I+  C+   +E A R   +M 
Sbjct: 527 YNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMV 586

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
               +P+V T ++LM+GLC  G   +A++L +  + K  + +++TY+TL+  +CK G + 
Sbjct: 587 ENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVD 646

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            A+   D M+++GL+PDA  Y  ++S   + G+ +EA N L ++   G            
Sbjct: 647 TALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG------------ 694

Query: 374 RIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL---------TYSSLITCFCKKGDIH 424
           ++  +    L K  P+ A +  +         +S          TY   +   C  G + 
Sbjct: 695 KLSQSFACPLLK--PSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLK 752

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           ++  ++DE++  G   D  T+  +M  L  R+K +  A
Sbjct: 753 EAKAVLDEMMQKGMPVDCSTYITLMEGLIKRQKRQTHA 790


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 183/352 (51%), Gaps = 11/352 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  +M+     P   SY TV+    E  +L+ A      M+  G    + +  +LI 
Sbjct: 161 AVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILID 220

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A CK +G MD A    +EM   G   D   Y +LI G C  G++   K LF E+  +  S
Sbjct: 221 AFCK-AGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDS 279

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  +TY +LI G C+   ++EA  +FE M  +GV PNV+TY+ L+DGLC  G + +A++ 
Sbjct: 280 PCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQP 339

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +MI K   PN VTY+ ++N LCK+G + +AVEI++ MK +  +PD   Y  ++   C 
Sbjct: 340 LNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCA 399

Query: 344 IGKYQEAANFLDEMVLGG--ITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
            G   EA+  L  M+       P+ +++       N ++ GLCK +  ++A  +Y  +  
Sbjct: 400 KGDLDEASKLLYLMLKDSSYTDPDVISY-------NALIHGLCKENRLHQALDIYDLLVE 452

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +  + D +T + L+    K GD++K+  +  ++     + +  T++A++   
Sbjct: 453 KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 199/378 (52%), Gaps = 9/378 (2%)

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++ RG+        A+ + ++MK  GC  +  ++  ++    +  ++  A  F + M+ +
Sbjct: 182 TVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFM 241

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G++  +     LI+  C + G +D    +F E+  RG +P + TY TLI G C+LG++ E
Sbjct: 242 GLEADLVVYTSLIRGFC-DCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKE 300

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A E+F+ M  +   P V TYT LI+GLC     +EA++    M  K  EPN  TY+ +++
Sbjct: 301 ASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIIN 360

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG--L 327
            LCK G  + A+E++++M  +R RP+ +TY+ LL GLC +G L EA ++L  M       
Sbjct: 361 KLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYT 420

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
            PD   Y  +I   C   +  +A +  D +V      +R+T   +I +++T+  G    D
Sbjct: 421 DPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVT--TNILLNSTLKAG----D 474

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            N+A +++  + +  I  +S TY+++I  FCK G ++ +  ++ ++ +    P    ++ 
Sbjct: 475 VNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNC 534

Query: 448 VMTALWDRRKMRQAAELL 465
           ++++L     + QA  L 
Sbjct: 535 LLSSLCKEGSLDQAWRLF 552



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 197/426 (46%), Gaps = 11/426 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           N    D  +++ +I       +   A +L + +    C  +   +  +   + +  +  +
Sbjct: 171 NSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDE 230

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM    +MK  G E     Y +++    +  +L      +  + E G  PC  + N LI+
Sbjct: 231 AMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR 290

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G +  A +IF  M  RG  P+ YTY  LI+GLC +GK  EA +    M  K   
Sbjct: 291 GFCK-LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEE 349

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P  VTY  +IN LC+   V +A+ + E M+ +   P+  TY+ L+ GLC  G   +A +L
Sbjct: 350 PNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKL 409

Query: 284 LQMMI--SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           L +M+  S    P++++Y+ L++GLCKE +L +A++I D +  +    D      +++  
Sbjct: 410 LYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNST 469

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
              G   +A     ++    I  N  T++        ++ G CKT   N A  +   MR 
Sbjct: 470 LKAGDVNKAMELWKQISDSKIVRNSDTYT-------AMIDGFCKTGMLNVAKGLLCKMRV 522

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
             +      Y+ L++  CK+G + ++ R+ +E+  D   PD  +++ ++        ++ 
Sbjct: 523 SELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKS 582

Query: 461 AAELLL 466
           A  LL+
Sbjct: 583 AESLLV 588



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 169/346 (48%), Gaps = 9/346 (2%)

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
            ++A LV     +LAF FYR M E        SL+ L++   +   T   AF +   M  
Sbjct: 77  NLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKT-GFAFGVLALMLK 135

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           RG   + Y +  L+ GLCR  +  +A  L +EM   +  P V +Y ++I G C+ K +E+
Sbjct: 136 RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A+ L  EM+  G   ++ T+  L+D  CK G   +AM  L+ M       ++V Y++L+ 
Sbjct: 196 ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIR 255

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           G C  G+L     + D +  +G  P A  Y  +I  FC +G+ +EA+   + M+  G+ P
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRP 315

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           N  T++        ++ GLC     + A Q    M  +    +++TY+ +I   CK G +
Sbjct: 316 NVYTYT-------GLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLV 368

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
             +  IV+ +      PD  T++ ++  L  +  + +A++LL L L
Sbjct: 369 ADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLML 414



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 165/396 (41%), Gaps = 79/396 (19%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRV---NKEKCDITEDIFLSICRGYGRVHRP 101
           G   D   ++ +I       +    + L D V       C IT   + ++ RG+ ++ + 
Sbjct: 242 GLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAIT---YNTLIRGFCKLGQL 298

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A  +F+ M E G  P   +Y  ++  L    + K A +    M E   +P   + N++
Sbjct: 299 KEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNII 358

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ET 219
           I  LCK+ G +  A +I   M  R   PD+ TY  L+ GLC  G + EA +L   M  ++
Sbjct: 359 INKLCKD-GLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDS 417

Query: 220 KACSPTVVTYTSLINGLCQ-----------------------------------SKSVEE 244
               P V++Y +LI+GLC+                                   +  V +
Sbjct: 418 SYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNK 477

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           AM L++++    +  N  TY++++DG CK G  + A  LL  M     +P++  Y+ LL+
Sbjct: 478 AMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLS 537

Query: 305 GLCKEGKLQEAVEILDRMKLQ-----------------------------------GLKP 329
            LCKEG L +A  + + M+                                     GL P
Sbjct: 538 SLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSP 597

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           D   Y K+I+ F  +G   EA +F D+MV  G  P+
Sbjct: 598 DLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 145/284 (51%), Gaps = 7/284 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRPLDAMRVF 108
           T++++I+KL        A ++++ + K +    +IT +I L      G +      + + 
Sbjct: 354 TYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLM 413

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCK 167
            K   +  +P   SY  ++  L +EN+L  A   Y  + E +G    V + N+L+ +  K
Sbjct: 414 LKDSSY-TDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTT-NILLNSTLK 471

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
            +G ++ A ++++++ +     +S TY  +I+G C+ G +  AK L  +M      P+V 
Sbjct: 472 -AGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVF 530

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
            Y  L++ LC+  S+++A RLFEEM+     P+V +++ ++DG  K G    A  LL  M
Sbjct: 531 DYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGM 590

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
                 P++ TYS L+N   K G L EA+   D+M   G +PDA
Sbjct: 591 SRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 112/237 (47%), Gaps = 8/237 (3%)

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           ++L+  L +S++ E A   + +M       N  + S L++   +   +  A  +L +M+ 
Sbjct: 76  SNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLK 135

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           +    N+  ++ LL GLC+  +  +AV +L  M+   L PD   Y  +I  FC+  + ++
Sbjct: 136 RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL 408
           A    +EM   G + + +TW +       ++   CK    + A      M+   +  D +
Sbjct: 196 ALELANEMKGSGCSWSLVTWGI-------LIDAFCKAGKMDEAMGFLKEMKFMGLEADLV 248

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            Y+SLI  FC  G++ +   + DE++  G  P   T++ ++       ++++A+E+ 
Sbjct: 249 VYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIF 305


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 215/451 (47%), Gaps = 51/451 (11%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHR 100
           A+G R +   ++ +I   +  ++F  A  +L  + ++   I  DIF   S+  G  +  R
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ--GIAPDIFCYNSLIIGLSKAKR 502

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A     +M E G +P   +Y   ++  +E ++   A ++ + MRE G+ P       
Sbjct: 503 MDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTG 562

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   CK    ++A    +R M ++G   D+ TY  L+NGL +  K+ +A+E+F+EM  K
Sbjct: 563 LINEYCKKGKVIEAC-SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +P V +Y  LING  +  ++++A  +F+EM  +G+ PNV  Y+ L+ G C+ G   +A
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  M  K   PN VTY T+++G CK G L EA  + D MKL+GL PD+ +Y  ++  
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 341 FCDI----------------------------------GKYQEAANFLDEMVLGGI---- 362
            C +                                  GK +     L+ ++ G      
Sbjct: 742 CCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            PN +T+       N ++  LCK  +   A +++  M+N ++    +TY+SL+  + K G
Sbjct: 802 KPNDVTY-------NIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMG 854

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
              +   + DE +  G  PD   +S ++ A 
Sbjct: 855 RRAEMFPVFDEAIAAGIEPDHIMYSVIINAF 885



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 127/486 (26%), Positives = 215/486 (44%), Gaps = 54/486 (11%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           ++  E  + KA  +FD   A   +G       ++ +I         R   +LL  + K  
Sbjct: 356 VMSKEGVMEKAKALFDGMIA---SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRN 412

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
             I+   + ++ +G         A  +  +M   GC P    Y T++   ++ ++   A 
Sbjct: 413 IVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAM 472

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT---- 196
           R  + M+E GI P +   N LI  L K +  MD A     EM   G  P+++TYG     
Sbjct: 473 RVLKEMKEQGIAPDIFCYNSLIIGLSK-AKRMDEARSFLVEMVENGLKPNAFTYGAFISG 531

Query: 197 -------------------------------LINGLCRLGKIYEAKELFKEMETKACSPT 225
                                          LIN  C+ GK+ EA   ++ M  +     
Sbjct: 532 YIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGD 591

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             TYT L+NGL ++  V++A  +F EMR KG+ P+VF+Y  L++G  K G   +A  +  
Sbjct: 592 AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+ +   PN++ Y+ LL G C+ G++++A E+LD M ++GL P+A  Y  II  +C  G
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSIS 404
              EA    DEM L G+ P+         ++ T+V G C+  D  RA  ++     +  +
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSF-------VYTTLVDGCCRLNDVERAITIF-GTNKKGCA 763

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL-----PDEGTWSAVMTALWDRRKMR 459
             +  +++LI    K G       +++ L +DG       P++ T++ ++  L     + 
Sbjct: 764 SSTAPFNALINWVFKFGKTELKTEVLNRL-MDGSFDRFGKPNDVTYNIMIDYLCKEGNLE 822

Query: 460 QAAELL 465
            A EL 
Sbjct: 823 AAKELF 828



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 204/446 (45%), Gaps = 54/446 (12%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG----YGRVH 99
           NG + +  T+   IS  + A++F  A+  +  +   +C +  +  L  C G    Y +  
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEM--RECGVLPNKVL--CTGLINEYCKKG 571

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           + ++A   +  M + G     K+Y  ++  L + +++  A   +R MR  GI P V S  
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYG 631

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           VLI    K  G M  A  IF EM   G TP+   Y  L+ G CR G+I +AKEL  EM  
Sbjct: 632 VLINGFSK-LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC------- 272
           K   P  VTY ++I+G C+S  + EA RLF+EM+ KG+ P+ F Y++L+DG C       
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750

Query: 273 --------KGGCSSQAM-----------------------ELLQMMISKRHRPNIVTYST 301
                   K GC+S                           L+     +  +PN VTY+ 
Sbjct: 751 AITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           +++ LCKEG L+ A E+  +M+   L P    Y  +++ +  +G+  E     DE +  G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 362 ITPNRLTWSLHIRI---HNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
           I P+ + +S+ I          + L   D   A          SIS    T  +L++ F 
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSIS----TCRALLSGFA 926

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGT 444
           K G++  + ++++ +V    +PD  T
Sbjct: 927 KVGEMEVAEKVMENMVRLQYIPDSAT 952



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 207/450 (46%), Gaps = 13/450 (2%)

Query: 21  LIRAEKDVNKALVIFDSA----TAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           L + EK+   A +  D A     +    G      T+ ++I  L    +   A+ LL  +
Sbjct: 244 LFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEM 303

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           +     +    +  +  G  +      A  +  +M   G    P  Y   + ++ +E  +
Sbjct: 304 DSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVM 363

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           + A   +  M   G+ P   +   LI+  C+    +   +++  EM  R      YTYGT
Sbjct: 364 EKAKALFDGMIASGLIPQAQAYASLIEGYCREK-NVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++ G+C  G +  A  + KEM    C P VV YT+LI    Q+    +AMR+ +EM+ +G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           + P++F Y+SL+ GL K     +A   L  M+    +PN  TY   ++G  +  +   A 
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           + +  M+  G+ P+  L   +I+ +C  GK  EA +    MV  GI  +  T+++     
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV----- 597

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             ++ GL K D  + A +++  MR + I+ D  +Y  LI  F K G++ K++ I DE+V 
Sbjct: 598 --LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE 655

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +G  P+   ++ ++       ++ +A ELL
Sbjct: 656 EGLTPNVIIYNMLLGGFCRSGEIEKAKELL 685



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 156/331 (47%), Gaps = 26/331 (7%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ KA  IFD    E   G   +   +++++     + +   A++LLD ++ +       
Sbjct: 642 NMQKASSIFDEMVEE---GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAV 698

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + +I  GY +     +A R+FD+MK  G  P    Y T++      N ++ A   +   
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758

Query: 147 REIGIQPCVASLNVLIKALCKNSGT----------MDAAFKIFREMPNRGCTPDSYTYGT 196
           ++ G     A  N LI  + K   T          MD +F       +R   P+  TY  
Sbjct: 759 KK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSF-------DRFGKPNDVTYNI 810

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +I+ LC+ G +  AKELF +M+     PTV+TYTSL+NG  +     E   +F+E  + G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-----RPNIVTYSTLLNGLCKEGK 311
           +EP+   YS +++   K G +++A+ L+  M +K       + +I T   LL+G  K G+
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGE 930

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           ++ A ++++ M      PD+    ++I+  C
Sbjct: 931 MEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 130/337 (38%), Gaps = 64/337 (18%)

Query: 186 GCTPDSYTYGTLING-----------------------------------LCRLGKIYEA 210
           G + D   +G L +G                                   L R  ++   
Sbjct: 146 GKSDDGVLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLF 205

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVE---------------------EAMRLF 249
            +++K M  +     V TY  LI   C++ +V+                      A++L 
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           E M  KG+ P  +TY  L+DGLCK      A  LL  M S     +  TYS L++GL K 
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
                A  ++  M   G+     +Y   I      G  ++A    D M+  G+ P    +
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 370 SLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +       ++++G C+    R  +++ + M+ R+I +   TY +++   C  GD+  +  
Sbjct: 386 A-------SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYN 438

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           IV E++  GC P+   ++ ++       +   A  +L
Sbjct: 439 IVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 110/262 (41%), Gaps = 29/262 (11%)

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           V +  L +G    + +EEA+ +F       + P +     L+D L +        ++ + 
Sbjct: 152 VLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKG 211

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL---------------------DRMKLQ 325
           M+ +    ++ TY  L+   C+ G +Q   ++L                     + M  +
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICK 271

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GL P    Y  +I   C I + ++A + L EM   G++ +  T+SL       ++ GL K
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL-------LIDGLLK 324

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             + + A  +   M +  I++    Y   I    K+G + K+  + D ++  G +P    
Sbjct: 325 GRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA 384

Query: 445 WSAVMTALWDRRKMRQAAELLL 466
           +++++      + +RQ  ELL+
Sbjct: 385 YASLIEGYCREKNVRQGYELLV 406


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 164/302 (54%), Gaps = 9/302 (2%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++ ALC+  G +D A ++FR M +R C  D YTY TL++GLC  G+I EA  L  EM+ +
Sbjct: 6   IVLALCR-VGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVE 64

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  V +  LI+ LC+   +  A +L + M  KG  PN  TY+SL+ GLC  G   +A
Sbjct: 65  GTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKA 124

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           M LL  M++ +  PN +T+ TL++G  K G+  + V +L  ++ +G + +   Y  +IS 
Sbjct: 125 MSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISG 184

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399
               GK +       EMV  G  PN + +S        ++ GLC+   P+ A +  + M+
Sbjct: 185 LFKEGKGEHGMQLWKEMVEKGCKPNTIVYS-------ALIDGLCREGKPDEAKEYLIEMK 237

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           N+  + +S TYSSL+  + + GDIHK+  +  E+  + C   E  +S ++  L    K++
Sbjct: 238 NKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLK 297

Query: 460 QA 461
           +A
Sbjct: 298 EA 299



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 191/382 (50%), Gaps = 15/382 (3%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           I L++CR  G V +   A+ VF  M +  C     +Y T++  L  E ++  A      M
Sbjct: 6   IVLALCR-VGNVDQ---AVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEM 61

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           +  G  P   + NVLI ALCK  G +  A K+   M  +GC P+  TY +L++GLC  GK
Sbjct: 62  QVEGTFPNPVAFNVLISALCK-KGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGK 120

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           + +A  L   M    C P  +T+ +L++G  +     + +R+   +  KG   N F+YSS
Sbjct: 121 LDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSS 180

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           L+ GL K G     M+L + M+ K  +PN + YS L++GLC+EGK  EA E L  MK +G
Sbjct: 181 LISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKG 240

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
             P++  Y  ++  + + G   +A     EM       + + +S+       ++ GLCK 
Sbjct: 241 HTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSI-------LINGLCKN 293

Query: 387 DP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG--CLPDEG 443
                A  V+  M +R I +D + YSS+I  FC    + +  ++ ++++       PD  
Sbjct: 294 GKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVV 353

Query: 444 TWSAVMTALWDRRKMRQAAELL 465
           T++ ++ A   +  + +A ++L
Sbjct: 354 TYNILLNAFCTKNSVSRAIDIL 375



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 126/295 (42%), Gaps = 24/295 (8%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+R +  ++S +IS L    +      L   + ++ C     ++ ++  G  R  +P +A
Sbjct: 170 GYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEA 229

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
                +MK  G  P   +Y +++    E   +  A   ++ M +          ++LI  
Sbjct: 230 KEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILING 289

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM--ETKAC 222
           LCKN G +  A  ++++M +RG   D   Y ++I+G C    + +  +LF +M       
Sbjct: 290 LCKN-GKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKL 348

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM-----------DG- 270
            P VVTY  L+N  C   SV  A+ +   M  +G +P+  T    +           DG 
Sbjct: 349 QPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGR 408

Query: 271 ---------LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
                    L K   +  A  ++++M+ K   P   T++  +  LCK  K+++ +
Sbjct: 409 EFLDELVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTWALAVQQLCKPMKVRKTI 463


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 212/430 (49%), Gaps = 14/430 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY-GRVHRPLDAMRVFDK 110
           T++L+   L    +   AE +L+ +      I   +F S+  G   R  R    +R+  +
Sbjct: 373 TYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISE 432

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M + G +P           L +  + + A   +  M E G+   +A+ N LI  LC+   
Sbjct: 433 MVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGK- 491

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            M  A ++ R M N+G   D+ TY  +I G C+  KI EA +L  +M  K   P    + 
Sbjct: 492 NMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFN 551

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           S+I+  C    +EEA+ L  +M+ +GV+P+V +Y +++DG CK     +A E L  +++ 
Sbjct: 552 SIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMAC 611

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +PN V Y+ L+ G  + G +  A+ +LD M+  G++P    Y  ++   C  G   EA
Sbjct: 612 GLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEA 671

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
               ++     I    + +++       ++QGLCK    + A   +  MR+RSI  + +T
Sbjct: 672 KTMFEQSRKNSIEVGVVGYTI-------MIQGLCKIGKMDEAMNYFEEMRSRSIPPNKIT 724

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD----RRKMRQAAELL 465
           Y++L+  +CK G+  +++++ DE+V  G +PD  +++ ++T         + + +AAE+ 
Sbjct: 725 YTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKAIEKAAEIS 784

Query: 466 LLELMNKCVE 475
            +   N C++
Sbjct: 785 SIMTQNDCLD 794



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 196/418 (46%), Gaps = 40/418 (9%)

Query: 84  TEDIFLSIC---RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
           + D+ ++ C      G +   +DA  V    +     P+ K+   +L  L     L    
Sbjct: 157 SSDLLINTCVTSSARGSLRLAVDAFHVLSSRR---ASPSVKTCNALLEALARTGNLGATC 213

Query: 141 RFYRHMREI-GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC--TPDSYTYGTL 197
           + +  MR+   + P   S   +IKALCK  G +D  FKI  ++ + G   +  +  Y  L
Sbjct: 214 KVFDEMRDCKTVTPNGYSYTSMIKALCK-VGKVDDGFKILSDLIHAGLQQSAGAVPYNLL 272

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++ LC+ G++ EA  L   ME    +P++VT+  LINGL +S    E   L  EM   G+
Sbjct: 273 MDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGI 332

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PN    + L+D  C+ G  ++A+ L   M+SK  +   VTY+ +   LCKEG+++ A  
Sbjct: 333 TPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAER 392

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCD-IGKYQEAANFLDEMVLGGITPNRLTWS------ 370
           IL+ M   G+   +GL+  +++      G+ +     + EMV  G+ PN    +      
Sbjct: 393 ILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQL 452

Query: 371 ----------------------LHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDS 407
                                 ++I   N ++ GLC+    + A +V  +M N+ + +D+
Sbjct: 453 CQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDN 512

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +TY+ +I   CK   I ++ ++ D+++  G  PD   +++++ A  D  KM +A  LL
Sbjct: 513 ITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLL 570



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 191/382 (50%), Gaps = 8/382 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF ++I+ L  +++F     LL  +        E I   +   + R     +A+R+FD+M
Sbjct: 303 TFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEM 362

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
                + T  +Y  +   L +E +++ A R    M   G+       N ++  L + +G 
Sbjct: 363 VSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGR 422

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +++  ++  EM  RG  P+          LC+  +  EA  ++ +M  K     + T  +
Sbjct: 423 LESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNA 482

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+GLC+ K+++ A  +   M +KG+E +  TY+ ++ G CK     +A++L   MI K 
Sbjct: 483 LIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKG 542

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+   ++++++  C  GK++EA+ +L +MK++G++PD   YG II  +C     Q+A 
Sbjct: 543 FKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKAN 602

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY 410
            +L+E++  G+ PN +       I+N ++ G  +  + + A  V  +M +  I   ++TY
Sbjct: 603 EYLNELMACGLKPNAV-------IYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTY 655

Query: 411 SSLITCFCKKGDIHKSARIVDE 432
            SL+   C  G + ++  + ++
Sbjct: 656 CSLMHWMCHAGLVDEAKTMFEQ 677



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 7/303 (2%)

Query: 51  STFSLMISKLVSANQFRPAEDLL-DRVNK--EKCDITEDIFLSICRGYGRVHRPLDAMRV 107
           +T + +I  L      + A ++L   VNK  E  +IT +I +  C    ++    +A+++
Sbjct: 478 ATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIE---EALKL 534

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
            D M   G +P    + +++    +  +++ A      M+  G+QP V S   +I   CK
Sbjct: 535 RDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCK 594

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
            +  +  A +   E+   G  P++  Y  LI G  R G I  A  +   ME+    PT V
Sbjct: 595 -AKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNV 653

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY SL++ +C +  V+EA  +FE+ R   +E  V  Y+ ++ GLCK G   +AM   + M
Sbjct: 654 TYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEM 713

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
            S+   PN +TY+TL+   CK G  +EA ++ D M   G+ PD   Y  +++ F  +   
Sbjct: 714 RSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSL 773

Query: 348 QEA 350
            +A
Sbjct: 774 DKA 776



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 139/272 (51%), Gaps = 11/272 (4%)

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS-KGVEPNVFT 263
           G +  A + F  + ++  SP+V T  +L+  L ++ ++    ++F+EMR  K V PN ++
Sbjct: 172 GSLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYS 231

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISK--RHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
           Y+S++  LCK G      ++L  +I    +     V Y+ L++ LCK G++ EA+ +  R
Sbjct: 232 YTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGR 291

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M+   + P    +G +I+      ++ E    L EM   GITPN +       I N ++ 
Sbjct: 292 MEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEV-------ICNELID 344

Query: 382 GLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
             C K     A +++  M ++ +   ++TY+ +    CK+G++ ++ RI++E++  G   
Sbjct: 345 WHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTI 404

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
             G +++V+  L  R    ++   L+ E++ +
Sbjct: 405 HSGLFNSVVAGLLQRTGRLESVVRLISEMVKR 436



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 1/238 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF+ D   F+ +I       +   A  LL ++  E        + +I  GY +      A
Sbjct: 542 GFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKA 601

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
               +++   G +P    Y  ++        +  A      M  IGIQP   +   L+  
Sbjct: 602 NEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHW 661

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           +C ++G +D A  +F +            Y  +I GLC++GK+ EA   F+EM +++  P
Sbjct: 662 MC-HAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPP 720

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
             +TYT+L+   C+S + EEA +LF+EM S G+ P+  +Y++L+ G  +     +A+E
Sbjct: 721 NKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKAIE 778


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 213/458 (46%), Gaps = 45/458 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ ++           A  LL R+ KE    T   + ++   Y R+     A
Sbjct: 240 GLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQA 299

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI-QPCVASLNVLIK 163
             V + M  FG EP   +Y  + A L +  ++  AF+    M  + I  P V + N L+ 
Sbjct: 300 TNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVD 359

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A  K   + DA   +  EM ++G      T+  ++ GLCR G++ EA    K M  +  +
Sbjct: 360 ACFKYQRSSDA-LNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLA 418

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+TY +LI+  C++++V +A  L +EM   G++ + FT ++L+  LCK     +A EL
Sbjct: 419 PDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEEL 478

Query: 284 LQM-----------------------------------MISKRHRPNIVTYSTLLNGLCK 308
           L+                                    M  ++  P+I TY+TL+ GLC 
Sbjct: 479 LRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCT 538

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            GKL EA++ L+ +  +GL PD   Y  II  +C  G  ++A  F ++M+     P+ +T
Sbjct: 539 IGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVT 598

Query: 369 WSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                   NT++ GLC      +A +++ S   +   VD +TY++LI   CK GD+  + 
Sbjct: 599 C-------NTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTAL 651

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
               ++   G  PD  T++ V++AL +  +  +A  +L
Sbjct: 652 HFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNML 689



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 187/375 (49%), Gaps = 15/375 (4%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+     M+ FG  P   +Y T+L     +  L  A      M++ GI P  A+ N L+
Sbjct: 228 DALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLV 287

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA- 221
            A  +  G +  A  +   M   G  PD +TY  L  GLC+ GK+ EA +L  EME  + 
Sbjct: 288 SAYAR-LGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSI 346

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            SP VVTY +L++   + +   +A+ L EEMR KGV+ ++ T++ ++ GLC+ G   +A+
Sbjct: 347 VSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEAL 406

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
             L+MM  +   P+++TY+TL++  CK   + +A  ++D M   GLK D      ++   
Sbjct: 407 GRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNL 466

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
           C   +Y+EA   L      G  P+ +++        TV+    K + P  A  ++  M  
Sbjct: 467 CKEKRYEEAEELLRSPPQRGFVPDEVSY-------GTVMAAYFKENKPEPALYLWDEMSK 519

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
           R ++    TY++LI   C  G + ++   ++EL+  G +PD+ T++ ++ A      + +
Sbjct: 520 RKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEK 579

Query: 461 AAELLLLELMNKCVE 475
           A      +  NK +E
Sbjct: 580 A-----FQFHNKMLE 589



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 128/531 (24%), Positives = 231/531 (43%), Gaps = 90/531 (16%)

Query: 5   TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN 64
           T   ++T +++   L  I+   +V +A+  F         GF  D  T++++ + L  A 
Sbjct: 279 TRATYNTLVSAYARLGWIKQATNVVEAMTAF---------GFEPDLWTYNVLAAGLCQAG 329

Query: 65  QFRPA---EDLLDRVNKEKCDI-TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
           +   A   +D ++ ++    D+ T +  +  C  Y    R  DA+ + ++M++ G + + 
Sbjct: 330 KVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKY---QRSSDALNLLEEMRDKGVKSSL 386

Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQP------------CVA------------ 156
            ++  V+  L  E QL+ A    + M E G+ P            C A            
Sbjct: 387 VTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDE 446

Query: 157 -----------SLNVLIKALCKNS------------------------GTMDAAF----- 176
                      +LN L+  LCK                          GT+ AA+     
Sbjct: 447 MVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENK 506

Query: 177 -----KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
                 ++ EM  R  TP  YTY TLI GLC +GK+ EA +   E+  K   P   TY  
Sbjct: 507 PEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNI 566

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I+  C+   +E+A +   +M     +P+V T ++LM+GLC  G   +A++L +    K 
Sbjct: 567 IIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKG 626

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            + +++TY+TL+  LCK+G +  A+     M+ +GL+PDA  Y  ++S   + G+ +EA 
Sbjct: 627 KKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQ 686

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
           N L ++   G    R ++ L   I ++  +     DP    +        +   D  +Y+
Sbjct: 687 NMLHKLDESGKLSERFSYPL---IKSSAEEVKTGKDPE--VKSDCESGGNAKGGDQESYN 741

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
             +   C  G + ++  ++DE++  G   D  T+  +M  L  R+K +  A
Sbjct: 742 KSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQKRQTHA 792



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 170/338 (50%), Gaps = 23/338 (6%)

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM-DAAFKIFREMPNRGCTPDSYT 193
           QL  +FR   H+R     P + + N ++ AL ++  T   A+  +FR +      P+ YT
Sbjct: 158 QLLHSFRRRGHVR-----PSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYT 212

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           +  L++  C  G + +A      M+    SP VVTY +L+   C+   + EA  L   M+
Sbjct: 213 FNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMK 272

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
            +G+ P   TY++L+    + G   QA  +++ M +    P++ TY+ L  GLC+ GK+ 
Sbjct: 273 KEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVD 332

Query: 314 EAVEILDRMK-LQGLKPDAGLYGKII-SCFCDIGKYQ---EAANFLDEMVLGGITPNRLT 368
           EA ++ D M+ L  + PD   Y  ++ +CF    KYQ   +A N L+EM   G+  + +T
Sbjct: 333 EAFKLKDEMEHLSIVSPDVVTYNTLVDACF----KYQRSSDALNLLEEMRDKGVKSSLVT 388

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                  HN VV+GLC+      A      M    ++ D +TY++LI  +CK  ++ K+ 
Sbjct: 389 -------HNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAF 441

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++DE+V  G   D  T + ++  L   ++  +A ELL
Sbjct: 442 VLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELL 479


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 215/451 (47%), Gaps = 51/451 (11%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHR 100
           A+G R +   ++ +I   +  ++F  A  +L  + ++   I  DIF   S+  G  +  R
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ--GIAPDIFCYNSLIIGLSKAKR 502

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A     +M E G +P   +Y   ++  +E ++   A ++ + MRE G+ P       
Sbjct: 503 MDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTG 562

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   CK    ++A    +R M ++G   D+ TY  L+NGL +  K+ +A+E+F+EM  K
Sbjct: 563 LINEYCKKEKVIEAC-SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +P V +Y  LING  +  ++++A  +F+EM  +G+ PNV  Y+ L+ G C+ G   +A
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  M  K   PN VTY T+++G CK G L EA  + D MKL+GL PD+ +Y  ++  
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 341 FCDI----------------------------------GKYQEAANFLDEMVLGGI---- 362
            C +                                  GK +     L+ ++ G      
Sbjct: 742 CCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            PN +T+       N ++  LCK  +   A +++  M+N ++    +TY+SL+  + K G
Sbjct: 802 KPNDVTY-------NIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMG 854

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
              +   + DE +  G  PD   +S ++ A 
Sbjct: 855 RRAEMFPVFDEAIAAGIEPDHIMYSVIINAF 885



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 204/446 (45%), Gaps = 54/446 (12%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG----YGRVH 99
           NG + +  T+   IS  + A++F  A+  +  +   +C +  +  L  C G    Y +  
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEM--RECGVLPNKVL--CTGLINEYCKKE 571

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           + ++A   +  M + G     K+Y  ++  L + +++  A   +R MR  GI P V S  
Sbjct: 572 KVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYG 631

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           VLI    K  G M  A  IF EM   G TP+   Y  L+ G CR G+I +AKEL  EM  
Sbjct: 632 VLINGFSK-LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC------- 272
           K   P  VTY ++I+G C+S  + EA RLF+EM+ KG+ P+ F Y++L+DG C       
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750

Query: 273 --------KGGCSSQAM-----------------------ELLQMMISKRHRPNIVTYST 301
                   K GC+S                           L+     +  +PN VTY+ 
Sbjct: 751 AITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
           +++ LCKEG L+ A E+  +M+   L P    Y  +++ +  +G+  E     DE +  G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 362 ITPNRLTWSLHIRI---HNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
           I P+ + +S+ I          + L   D   A          SIS    T  +L++ F 
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSIS----TCRALLSGFA 926

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGT 444
           K G++  + ++++ +V    +PD  T
Sbjct: 927 KVGEMEVAEKVMENMVRLQYIPDSAT 952



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 126/486 (25%), Positives = 214/486 (44%), Gaps = 54/486 (11%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           ++  E  + KA  +FD   A   +G       ++ +I         R   +LL  + K  
Sbjct: 356 VMSKEGVMEKAKALFDGMIA---SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRN 412

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
             I+   + ++ +G         A  +  +M   GC P    Y T++   ++ ++   A 
Sbjct: 413 IVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAM 472

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT---- 196
           R  + M+E GI P +   N LI  L K +  MD A     EM   G  P+++TYG     
Sbjct: 473 RVLKEMKEQGIAPDIFCYNSLIIGLSK-AKRMDEARSFLVEMVENGLKPNAFTYGAFISG 531

Query: 197 -------------------------------LINGLCRLGKIYEAKELFKEMETKACSPT 225
                                          LIN  C+  K+ EA   ++ M  +     
Sbjct: 532 YIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGD 591

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             TYT L+NGL ++  V++A  +F EMR KG+ P+VF+Y  L++G  K G   +A  +  
Sbjct: 592 AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+ +   PN++ Y+ LL G C+ G++++A E+LD M ++GL P+A  Y  II  +C  G
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSIS 404
              EA    DEM L G+ P+         ++ T+V G C+  D  RA  ++     +  +
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSF-------VYTTLVDGCCRLNDVERAITIF-GTNKKGCA 763

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL-----PDEGTWSAVMTALWDRRKMR 459
             +  +++LI    K G       +++ L +DG       P++ T++ ++  L     + 
Sbjct: 764 SSTAPFNALINWVFKFGKTELKTEVLNRL-MDGSFDRFGKPNDVTYNIMIDYLCKEGNLE 822

Query: 460 QAAELL 465
            A EL 
Sbjct: 823 AAKELF 828



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 206/450 (45%), Gaps = 13/450 (2%)

Query: 21  LIRAEKDVNKALVIFDSA----TAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           L + EK+   A +  D A     +    G      T+ ++I  L    +   A+ LL  +
Sbjct: 244 LFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEM 303

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
           +     +    +  +  G  +      A  +  +M   G    P  Y   + ++ +E  +
Sbjct: 304 DSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVM 363

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           + A   +  M   G+ P   +   LI+  C+    +   +++  EM  R      YTYGT
Sbjct: 364 EKAKALFDGMIASGLIPQAQAYASLIEGYCREK-NVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           ++ G+C  G +  A  + KEM    C P VV YT+LI    Q+    +AMR+ +EM+ +G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           + P++F Y+SL+ GL K     +A   L  M+    +PN  TY   ++G  +  +   A 
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           + +  M+  G+ P+  L   +I+ +C   K  EA +    MV  GI  +  T+++     
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTV----- 597

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
             ++ GL K D  + A +++  MR + I+ D  +Y  LI  F K G++ K++ I DE+V 
Sbjct: 598 --LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE 655

Query: 436 DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +G  P+   ++ ++       ++ +A ELL
Sbjct: 656 EGLTPNVIIYNMLLGGFCRSGEIEKAKELL 685



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 156/331 (47%), Gaps = 26/331 (7%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ KA  IFD    E   G   +   +++++     + +   A++LLD ++ +       
Sbjct: 642 NMQKASSIFDEMVEE---GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAV 698

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + +I  GY +     +A R+FD+MK  G  P    Y T++      N ++ A   +   
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758

Query: 147 REIGIQPCVASLNVLIKALCKNSGT----------MDAAFKIFREMPNRGCTPDSYTYGT 196
           ++ G     A  N LI  + K   T          MD +F       +R   P+  TY  
Sbjct: 759 KK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSF-------DRFGKPNDVTYNI 810

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +I+ LC+ G +  AKELF +M+     PTV+TYTSL+NG  +     E   +F+E  + G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-----RPNIVTYSTLLNGLCKEGK 311
           +EP+   YS +++   K G +++A+ L+  M +K       + +I T   LL+G  K G+
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGE 930

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           ++ A ++++ M      PD+    ++I+  C
Sbjct: 931 MEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 130/337 (38%), Gaps = 64/337 (18%)

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAK---------------------------------- 211
           G + D   +G L +G    G I EA                                   
Sbjct: 146 GKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLF 205

Query: 212 -ELFKEMETKACSPTVVTYTSLINGLCQSKSVE---------------------EAMRLF 249
            +++K M  +     V TY  LI   C++ +V+                      A++L 
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           E M  KG+ P  +TY  L+DGLCK      A  LL  M S     +  TYS L++GL K 
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
                A  ++  M   G+     +Y   I      G  ++A    D M+  G+ P    +
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 370 SLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +       ++++G C+    R  +++ + M+ R+I +   TY +++   C  GD+  +  
Sbjct: 386 A-------SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYN 438

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           IV E++  GC P+   ++ ++       +   A  +L
Sbjct: 439 IVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVL 475



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 109/262 (41%), Gaps = 29/262 (11%)

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           V +  L +G      +EEA+ +F       + P +     L+D L +        ++ + 
Sbjct: 152 VLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKG 211

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL---------------------DRMKLQ 325
           M+ +    ++ TY  L+   C+ G +Q   ++L                     + M  +
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICK 271

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GL P    Y  +I   C I + ++A + L EM   G++ +  T+SL       ++ GL K
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL-------LIDGLLK 324

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             + + A  +   M +  I++    Y   I    K+G + K+  + D ++  G +P    
Sbjct: 325 GRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA 384

Query: 445 WSAVMTALWDRRKMRQAAELLL 466
           +++++      + +RQ  ELL+
Sbjct: 385 YASLIEGYCREKNVRQGYELLV 406


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/395 (30%), Positives = 189/395 (47%), Gaps = 50/395 (12%)

Query: 80  KCDITEDIFL--SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +C+   D+F   S+  GY R      A  VF  M          SY  ++  L E  +L 
Sbjct: 217 RCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPR----RNAVSYTNLIHGLCEAGKLH 272

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A  F+  MRE G  P V +  VL+ ALC+ SG    A  +F EM  RGC P+ YTY  L
Sbjct: 273 EALEFWARMREDGCFPTVRTYTVLVCALCE-SGRELEALSLFGEMRERGCEPNVYTYTVL 331

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+ LC+ G++ EA ++  EM  K  +P+VV + +LI   C+   +E+A+ +   M SK V
Sbjct: 332 IDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKV 391

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PNV TY+ L+ G C+G    +AM LL  M+  +  P++VTY+TL++GLC+ G +  A  
Sbjct: 392 CPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASR 451

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +   M   G  PD   +   + C C +G+  EA   L+                      
Sbjct: 452 LFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILE---------------------- 489

Query: 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
                              S++ + +  +   Y++LI  +CK G I  +A +   ++ + 
Sbjct: 490 -------------------SLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEE 530

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           CLP+  T++ ++  L    K++ A  +LL+E M K
Sbjct: 531 CLPNSITFNVMIDGLRKEGKVQDA--MLLVEDMAK 563



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 207/444 (46%), Gaps = 37/444 (8%)

Query: 24  AEKDVNKALVIFDSATAEYAN-GFRHDN-STFSLMISKLVSANQFRPAEDLLDRVNKEKC 81
            EK V  ++V F++    Y   G   D      LM SK V  N                 
Sbjct: 352 VEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPN----------------V 395

Query: 82  DITEDIFLSICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
               ++    CRG     + +D AM + +KM E    P   +Y T++  L E   +  A 
Sbjct: 396 RTYNELICGFCRG-----KSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSAS 450

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           R +R M   G  P   + N  +  LC+  G +  A +I   +  +    + + Y  LI+G
Sbjct: 451 RLFRLMIRDGFSPDQWTFNAFMVCLCR-MGRVGEAHQILESLKEKHVKANEHAYTALIDG 509

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C+ GKI  A  LFK M  + C P  +T+  +I+GL +   V++AM L E+M    V+P 
Sbjct: 510 YCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPT 569

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           + TY+ L++ + K     +A E+L  +IS  ++PN+VTY+  +   C +G+L+EA E++ 
Sbjct: 570 LHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVI 629

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           ++K +G+  D+ +Y  +I+ +  +G    A   L  M   G  P+ LT+S  I + + V+
Sbjct: 630 KIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYS--ILMKHLVI 687

Query: 381 QGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
           +   K   N    V L +   +ISVD+       T    K D   +  + +++   GC+P
Sbjct: 688 EKHKKEGSN---PVGLDVSLTNISVDN-------TDIWSKIDFGITTVLFEKMAECGCVP 737

Query: 441 DEGTWSAVMTALWDRRKMRQAAEL 464
           +  T+S ++  L    ++  A  L
Sbjct: 738 NLNTYSKLINGLCKVGRLNVAFSL 761



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 43/356 (12%)

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM---PNRGCTPDSYTYGTLINGL 201
           H  ++  +  + S N L+  L + S  +D    +++EM         P+  T  T++N  
Sbjct: 141 HQHQLAFKLSLTSYNRLLMCLSRFS-MVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSY 199

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLI---------------------------- 233
           C+LG +  A+  F  +      P + TYTSL+                            
Sbjct: 200 CKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYT 259

Query: 234 ---NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
              +GLC++  + EA+  +  MR  G  P V TY+ L+  LC+ G   +A+ L   M  +
Sbjct: 260 NLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRER 319

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN+ TY+ L++ LCKEG++ EA+++L+ M  +G+ P    +  +I  +C  G  ++A
Sbjct: 320 GCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDA 379

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
              L  M    + PN       +R +N ++ G C+    +RA  +   M    +S D +T
Sbjct: 380 VGVLGLMESKKVCPN-------VRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVT 432

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y++LI   C+ G +  ++R+   ++ DG  PD+ T++A M  L    ++ +A ++L
Sbjct: 433 YNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQIL 488



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 101/453 (22%), Positives = 193/453 (42%), Gaps = 42/453 (9%)

Query: 34  IFDSATAEYA----NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           + DSA+  +     +GF  D  TF+  +  L    +   A  +L+ + ++     E  + 
Sbjct: 445 VVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYT 504

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  GY +  +   A  +F +M    C P   ++  ++  L +E +++ A      M + 
Sbjct: 505 ALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKF 564

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            ++P + + N+L++ + K     D A +I   + + G  P+  TY   I   C  G++ E
Sbjct: 565 DVKPTLHTYNILVEEVLKEYD-FDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEE 623

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A+E+  +++ +        Y  LIN       ++ A  +   M   G EP+  TYS LM 
Sbjct: 624 AEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMK 683

Query: 270 GLC-----KGGCSSQAME------------------------LLQMMISKRHRPNIVTYS 300
            L      K G +   ++                        L + M      PN+ TYS
Sbjct: 684 HLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYS 743

Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
            L+NGLCK G+L  A  +   M+  G+ P   ++  ++S  C +G + EA   LD M+  
Sbjct: 744 KLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMM-- 801

Query: 361 GITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
                  +   H+  +  ++ GL  + +  +A  V+ S+     + D + +  LI    K
Sbjct: 802 -----ECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAK 856

Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            G + + + +++ +  +GC     T+S +M  L
Sbjct: 857 TGYVDQCSELLNLMEKNGCRLHPETYSMLMQEL 889



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 157/410 (38%), Gaps = 72/410 (17%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DIT 84
           V +A  I +S   ++     H    ++ +I     A +   A  L  R+  E+C    IT
Sbjct: 481 VGEAHQILESLKEKHVKANEH---AYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSIT 537

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
            ++ +   R  G+V    DAM + + M +F  +PT  +Y  ++  +++E     A     
Sbjct: 538 FNVMIDGLRKEGKVQ---DAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILN 594

Query: 145 HMREIGIQPCVASLNVLIKALC---------------KNSGTM----------------- 172
            +   G QP V +    IKA C               KN G +                 
Sbjct: 595 RLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMG 654

Query: 173 --DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE------------------ 212
             D+AF + R M   GC P   TY  L+  L       E                     
Sbjct: 655 LLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDI 714

Query: 213 -----------LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
                      LF++M    C P + TY+ LINGLC+   +  A  L+  MR  G+ P+ 
Sbjct: 715 WSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSE 774

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             ++SL+   CK G   +A+ LL  M+   H  ++ +Y  L+ GL ++   ++A  +   
Sbjct: 775 IIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCS 834

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +   G   D   +  +I      G   + +  L+ M   G   +  T+S+
Sbjct: 835 LLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSM 884


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 225/475 (47%), Gaps = 49/475 (10%)

Query: 16  AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR 75
           ++V++++   K V+KA+ IF           +     ++ MI  L+   Q+    +L + 
Sbjct: 163 SEVVRMLGNAKMVSKAIAIFYQIKTRKC---QPTAQAYNSMIIMLMHEGQYGKVHELYNE 219

Query: 76  VNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134
           ++ E  C      + ++   + ++ R   A ++ ++MKE G +PT K Y  ++ +  + +
Sbjct: 220 MSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLD 279

Query: 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194
            +  A   +  MR    +P V +   LI+ L K +G +D A+  F EM   GC PD+   
Sbjct: 280 DVHGALSLFEEMRHQYCRPDVFTYTELIRGLGK-AGRIDEAYHFFYEMQREGCRPDTVVM 338

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS-VEEAMRLFEEMR 253
             +IN L + G++ +A +LF+EM T  C P+VVTY ++I  L +SKS   E    FE M+
Sbjct: 339 NNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMK 398

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG-------- 305
             G+ P+ FTYS L+DG CK     +AM LL+ M  K   P    Y +L++         
Sbjct: 399 ESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 458

Query: 306 ---------------------------LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
                                      L K G+L +A+ + D M   G  PD   Y  ++
Sbjct: 459 LACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALM 518

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397
           S     G   EA + +  M   G  P+       I  +N ++ GL KT  P+RA ++  +
Sbjct: 519 SGLARTGMLDEALSTMRRMQEHGCIPD-------INSYNIILNGLAKTGGPHRAMEMLSN 571

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           M+  ++  D ++Y++++      G   ++A++++E+   G   D  T+S+++ A+
Sbjct: 572 MKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAI 626



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 170/379 (44%), Gaps = 42/379 (11%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG +     ++++I+     +    A  L + +  + C      +  + RG G+  R  +
Sbjct: 259 NGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDE 318

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A   F +M+  GC P       ++  L +  +L  A + ++ M  +   P V + N +IK
Sbjct: 319 AYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIK 378

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           AL ++          F  M   G +P S+TY  LI+G C+  ++ +A  L +EM+ K   
Sbjct: 379 ALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFP 438

Query: 224 PTVVTYTSLINGLCQSK-----------------------------------SVEEAMRL 248
           P    Y SLI+ L ++K                                    +++A+ +
Sbjct: 439 PCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINM 498

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F+EM   G  P+V+ Y++LM GL + G   +A+  ++ M      P+I +Y+ +LNGL K
Sbjct: 499 FDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAK 558

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G    A+E+L  MK   ++PD   Y  ++      G ++EAA  ++EM   G   + +T
Sbjct: 559 TGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLIT 618

Query: 369 WSLHIRIHNTVVQGLCKTD 387
           +S       ++++ + K D
Sbjct: 619 YS-------SILEAIGKVD 630



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 207/497 (41%), Gaps = 95/497 (19%)

Query: 6   MFKWST-----------KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFS 54
           +FKW             ++    V ++++ +  VN  +  F  A       + HD ST+ 
Sbjct: 70  IFKWGPDAEKALEVLMLRVDHWLVREVMKTDIGVNVKMQFFRWAAKR--RNYEHDTSTYM 127

Query: 55  LMISKLVSANQFRPAEDLL-DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
            +I  L    Q+     ++ + V    C +T      + R  G       A+ +F ++K 
Sbjct: 128 ALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKT 187

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
             C+PT ++Y +++ +L+ E Q       Y  + E+                        
Sbjct: 188 RKCQPTAQAYNSMIIMLMHEGQ-------YGKVHEL------------------------ 216

Query: 174 AAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGK-------------------------- 206
                + EM   G C PD+ TY  LI+  C+LG+                          
Sbjct: 217 -----YNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTML 271

Query: 207 ---------IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
                    ++ A  LF+EM  + C P V TYT LI GL ++  ++EA   F EM+ +G 
Sbjct: 272 ITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGC 331

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK-EGKLQEAV 316
            P+    +++++ L K G    AM+L Q M + R  P++VTY+T++  L + + +  E  
Sbjct: 332 RPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVP 391

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
              +RMK  G+ P +  Y  +I  FC   + ++A   L+EM   G  P    +       
Sbjct: 392 SWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYC------ 445

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
            +++  L K    + A +++  ++    S  +  Y+ +I    K G +  +  + DE+  
Sbjct: 446 -SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNK 504

Query: 436 DGCLPDEGTWSAVMTAL 452
            GC PD   ++A+M+ L
Sbjct: 505 LGCAPDVYAYNALMSGL 521



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 151/310 (48%), Gaps = 13/310 (4%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPTV 226
           N+  +  A  IF ++  R C P +  Y ++I  L   G+  +  EL+ EM T+  C P  
Sbjct: 171 NAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDT 230

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           +TY++LI+  C+    + A +L  EM+  G++P    Y+ L+    K      A+ L + 
Sbjct: 231 MTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEE 290

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           M  +  RP++ TY+ L+ GL K G++ EA      M+ +G +PD  +   +I+     G+
Sbjct: 291 MRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGR 350

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV---YLSMRNRSI 403
             +A     EM      P+ +T+       NT+++ L ++  +RA +V   +  M+   I
Sbjct: 351 LDDAMKLFQEMGTLRCIPSVVTY-------NTIIKALFESK-SRASEVPSWFERMKESGI 402

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
           S  S TYS LI  FCK   + K+  +++E+   G  P    + +++ AL   ++   A E
Sbjct: 403 SPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACE 462

Query: 464 LLLLELMNKC 473
            L  EL   C
Sbjct: 463 -LFQELKENC 471



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI---TPNRLTWSLHIRIHNTV 379
           K +  + D   Y  +I C   + +Y E    + EMV   I   TP  L+  + +  +  +
Sbjct: 115 KRRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKM 174

Query: 380 VQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-C 438
           V        ++A  ++  ++ R     +  Y+S+I     +G   K   + +E+  +G C
Sbjct: 175 V--------SKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHC 226

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELL 465
            PD  T+SA+++A     +   A +LL
Sbjct: 227 FPDTMTYSALISAFCKLGRRDSATQLL 253


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 189/394 (47%), Gaps = 29/394 (7%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R  DA+ V D M   GC P   +Y  +L    +    + A      MR  G +P   + N
Sbjct: 178 RVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYN 237

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           V+I A+C+  G +D A ++   +P+RGC P++  Y T++ G C + +  +A E+  EM  
Sbjct: 238 VIIDAMCR-EGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVR 296

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           + C P   T   +IN LC+   +++     E+M   G   NV TY++++ G+C+ G    
Sbjct: 297 ENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDS 356

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A+ELL  M S   +P+IVTY+T+L GLC   + ++A E++ +M      PD   +  IIS
Sbjct: 357 ALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIIS 416

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI-------------------------- 373
            +C  G   +A     +M   G  PN  T+S  I                          
Sbjct: 417 FWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNT 476

Query: 374 -RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431
            +++  + + L K D      QV   +++  IS  ++ Y++++   C+ G    +  ++ 
Sbjct: 477 DKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLA 536

Query: 432 ELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           ++V  GC+PDE T+  ++  L+     ++A ELL
Sbjct: 537 DMVSCGCMPDESTYIILIEGLFYEGYSKEARELL 570



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 176/358 (49%), Gaps = 31/358 (8%)

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           R +   G +   A+   L+   C+ +G ++ A ++   MP       +Y +  LI+ LC 
Sbjct: 117 RVVEACGPEATAATYGALVDGYCR-AGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCE 175

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G++ +A  +   M  + C+P VVTY  L+   C+ +   +A+ L + MR++G EPN  T
Sbjct: 176 RGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVT 235

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y+ ++D +C+ G   QA ELL  + S+  +PN V Y+T+L G C   +  +A EILD M 
Sbjct: 236 YNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMV 295

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL------------ 371
            +   P+      II+  C  G  Q+   +L++M   G T N +T++             
Sbjct: 296 RENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVD 355

Query: 372 ----------------HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLI 414
                            I  +NTV++GLC  D    A ++ + M       D+ T++++I
Sbjct: 356 SALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTII 415

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
           + +C+KG I ++  +  ++   GC P+  T+S ++  L    KM QA E LL E+ NK
Sbjct: 416 SFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALE-LLNEMANK 472



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 170/343 (49%), Gaps = 19/343 (5%)

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
           L+ L+    L  A R           P V   N L++ LC+     DAA  +        
Sbjct: 71  LSALIHRGDLDAALRLVGSSPR---PPDVPLANRLVRDLCRRGRPADAARVV------EA 121

Query: 187 CTPDS--YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
           C P++   TYG L++G CR G + +A+ +   M     + +   +  LI+ LC+   V +
Sbjct: 122 CGPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVAD 181

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A+ + + M  +G  P+V TY+ L+   CKG    QA+EL+  M ++   PN VTY+ +++
Sbjct: 182 ALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIID 241

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
            +C+EG + +A E+L+ +  +G KP+   Y  ++  FC I ++ +A   LDEMV     P
Sbjct: 242 AMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPP 301

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDI 423
           N  T        N ++  LC+    +   +YL  M     + + +TY+++I+  C++G++
Sbjct: 302 NEATL-------NVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNV 354

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466
             +  ++  +   GC PD  T++ V+  L    +   A EL++
Sbjct: 355 DSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMI 397



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 176/361 (48%), Gaps = 5/361 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   +LQ     +   +AL + D   AE   G   +N T++++I  +        A +L
Sbjct: 199 VTYNILLQAACKGRGYRQALELIDFMRAE---GCEPNNVTYNVIIDAMCREGDVDQAREL 255

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L+ +    C      + ++ +G+  + R +DA  + D+M    C P   +   ++  L  
Sbjct: 256 LNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCR 315

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           +  L+    +   M + G    V + N +I  +C+  G +D+A ++   M + GC PD  
Sbjct: 316 KGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCE-QGNVDSALELLSNMQSFGCKPDIV 374

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY T++ GLC   +  +A+EL  +M      P   T+ ++I+  CQ   + +A  +F++M
Sbjct: 375 TYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQM 434

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             KG  PN  TYS+++ GL K G   QA+ELL  M +K    + + Y  L   L KE K+
Sbjct: 435 PEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKM-YRVLTESLNKEDKI 493

Query: 313 QEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH 372
           +E V+++ +++  G+ P   LY  ++   C  GK   A + L +MV  G  P+  T+ + 
Sbjct: 494 EEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIIL 553

Query: 373 I 373
           I
Sbjct: 554 I 554



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 158/346 (45%), Gaps = 38/346 (10%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
             +T   ++  +  E DV++A  + +S  +    G + +   ++ ++    S  ++  A+
Sbjct: 232 NNVTYNVIIDAMCREGDVDQARELLNSLPSR---GCKPNTVNYNTVLKGFCSIERWVDAD 288

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           ++LD + +E C   E     I     R           +KM + GC     +Y  V++ +
Sbjct: 289 EILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGM 348

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA---------------- 174
            E+  +  A     +M+  G +P + + N ++K LC      DA                
Sbjct: 349 CEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDN 408

Query: 175 ------------------AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
                             AF++F++MP +GC P+S TY T+I GL + GK+ +A EL  E
Sbjct: 409 STFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNE 468

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  K  + T   Y  L   L +   +EE +++  +++  G+ P    Y++++ GLC+ G 
Sbjct: 469 MANKGFN-TDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGK 527

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           +  A+++L  M+S    P+  TY  L+ GL  EG  +EA E+L R+
Sbjct: 528 TDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSRL 573



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 2/216 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ ++  L SA+++  AE+L+ ++++         F +I   + +    L A
Sbjct: 368 GCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQA 427

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             VF +M E GC P   +Y T++  L +  +++ A      M   G         VL ++
Sbjct: 428 FEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFN-TDKMYRVLTES 486

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L K    ++   ++  ++ + G +P +  Y T++ GLCR GK   A ++  +M +  C P
Sbjct: 487 LNKED-KIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMP 545

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
              TY  LI GL      +EA  L   + S+ V  N
Sbjct: 546 DESTYIILIEGLFYEGYSKEARELLSRLCSRDVLSN 581


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 186/348 (53%), Gaps = 9/348 (2%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           + F  M   G + +  +Y  ++  L +E  L++A   +  M+E G  P + + N LI   
Sbjct: 241 KFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 300

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            K  G +D    IF +M +  C PD  TY  LIN  C+  ++ +A E   EM+     P 
Sbjct: 301 GK-LGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPN 359

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VVTY++ I+  C+   ++EA++ F +MR   + PN FTY+SL+D  CK G  ++A++L++
Sbjct: 360 VVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVE 419

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            ++    + N+VTY+ LL+GLC+EG+++EA E+   M   G+ P+   Y  ++  F    
Sbjct: 420 EILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAK 479

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSIS 404
           + + A + L EM    I P+ L       ++ T++ GLC        ++ +  ++   I+
Sbjct: 480 EMEYAKDILKEMKEKCIKPDLL-------LYGTILWGLCNESRLEEAKLLIGEIKESGIN 532

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            +++ Y++L+  + K G   ++  +++E++  G +  E T+ A++  L
Sbjct: 533 TNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGL 580



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 186/366 (50%), Gaps = 15/366 (4%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A++ F  M+     P   +Y +++    +   L  A +    + + GI+  V +   L+
Sbjct: 378 EAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 437

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LC+  G M  A ++FR M N G  P+  TY  L++G  +  ++  AK++ KEM+ K  
Sbjct: 438 DGLCE-EGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI 496

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P ++ Y +++ GLC    +EEA  L  E++  G+  N   Y++LMD   K G +++A+ 
Sbjct: 497 KPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALT 556

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL+ M+        VTY  L++GLCK G +QEA+    RM   GL+P+  +Y  ++   C
Sbjct: 557 LLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLC 616

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
               ++ A    DEM+  G+ P+++ ++        ++ G  K   +   Q  L++R+R 
Sbjct: 617 KNNCFEVAKKLFDEMLDKGMMPDKIAYT-------ALIDGNMK---HGNLQEALNLRDRM 666

Query: 403 ISV----DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           I +    D   Y++LI      G + K+  ++DE++  G LPDE  +  ++   +   K+
Sbjct: 667 IEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKV 726

Query: 459 RQAAEL 464
            +A EL
Sbjct: 727 DEALEL 732



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 221/460 (48%), Gaps = 39/460 (8%)

Query: 9   WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
           W++++       L+   +D   AL  F+ A      GF+H +  + +++  L  A  +  
Sbjct: 100 WASRV-------LVELCQDARLALRFFEWAKGRI--GFQHTSEAYCILVHILFCARFYSD 150

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM--KEFGCEPTPKSYITV 126
           A  +L  +              IC     + R L +  VFD +      C P    +  +
Sbjct: 151 ANAVLKEL--------------IC-----LRRVLPSWDVFDLLWATRNVCVPGFGVFDAL 191

Query: 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
            + L+E   L+ A   +  MR+  + P   S N L+  L K  G  D + K F++M   G
Sbjct: 192 FSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSK-VGRGDLSRKFFKDMGAAG 250

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
                +TY  +I+ LC+ G +  A+ LF +M+    +P +VTY SLI+G  +   ++E +
Sbjct: 251 IKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECI 310

Query: 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            +FE+M+    +P+V TY++L++  CK     +A E L  M +   +PN+VTYST ++  
Sbjct: 311 CIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAF 370

Query: 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
           CKEG LQEA++    M+   L P+   Y  +I   C  G   EA   ++E++  GI  N 
Sbjct: 371 CKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNV 430

Query: 367 LTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
           +T++        ++ GLC+    + A +V+ +M N  ++ +  TY++L+  F K  ++  
Sbjct: 431 VTYT-------ALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEY 483

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  I+ E+      PD   +  ++  L +  ++ +A  L+
Sbjct: 484 AKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLI 523



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 159/318 (50%), Gaps = 1/318 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ +I     A     A  L++ + +    +    + ++  G     R  +A  VF  M
Sbjct: 397 TYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAM 456

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P  ++Y  ++   ++  +++ A    + M+E  I+P +     ++  LC N   
Sbjct: 457 LNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLC-NESR 515

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++ A  +  E+   G   ++  Y TL++   + G+  EA  L +EM       T VTY +
Sbjct: 516 LEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCA 575

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+GLC+S  V+EAM  F  M   G++PNV  Y++L+DGLCK  C   A +L   M+ K 
Sbjct: 576 LIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKG 635

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
             P+ + Y+ L++G  K G LQEA+ + DRM   G++ D   Y  +I      G+ Q+A 
Sbjct: 636 MMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKAR 695

Query: 352 NFLDEMVLGGITPNRLTW 369
           N LDEM+  G+ P+ + +
Sbjct: 696 NLLDEMIGKGVLPDEVVY 713



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 166/327 (50%), Gaps = 10/327 (3%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P     + L  AL +  G ++ A + F +M      P   +   L++ L ++G+   +++
Sbjct: 183 PGFGVFDALFSALIE-LGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRK 241

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            FK+M       +V TY  +I+ LC+   +E A  LF +M+  G  P++ TY+SL+DG  
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHG 301

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G   + + + + M      P+++TY+ L+N  CK  ++ +A E L  MK  GLKP+  
Sbjct: 302 KLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVV 361

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRA 391
            Y   I  FC  G  QEA  F  +M    +TPN  T++       +++   CK  +   A
Sbjct: 362 TYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYT-------SLIDANCKAGNLAEA 414

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            ++   +    I ++ +TY++L+   C++G + ++  +   ++  G  P++ T++A++  
Sbjct: 415 LKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHG 474

Query: 452 LWDRRKMRQAAELLLLELMNKCVEAEV 478
               ++M  A + +L E+  KC++ ++
Sbjct: 475 FIKAKEMEYAKD-ILKEMKEKCIKPDL 500



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 154/318 (48%), Gaps = 1/318 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T++ ++  L    + + AE++   +        ++ + ++  G+ +      A
Sbjct: 425 GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYA 484

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +  +MKE   +P    Y T+L  L  E++L+ A      ++E GI         L+ A
Sbjct: 485 KDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDA 544

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             K SG    A  +  EM + G      TY  LI+GLC+ G + EA   F  M      P
Sbjct: 545 YFK-SGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQP 603

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V  YT+L++GLC++   E A +LF+EM  KG+ P+   Y++L+DG  K G   +A+ L 
Sbjct: 604 NVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLR 663

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             MI      ++  Y+ L+ GL   G++Q+A  +LD M  +G+ PD  +Y  +I  +  +
Sbjct: 664 DRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYAL 723

Query: 345 GKYQEAANFLDEMVLGGI 362
           GK  EA    +EM   G+
Sbjct: 724 GKVDEALELQNEMAKRGM 741



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 1/214 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   +   ++ ++     + Q   A  LL+ +       TE  + ++  G  +     +
Sbjct: 529 SGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQE 588

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM  F +M E G +P    Y  ++  L + N  ++A + +  M + G+ P   +   LI 
Sbjct: 589 AMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALID 648

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
              K+ G +  A  +   M   G   D + Y  LI GL   G++ +A+ L  EM  K   
Sbjct: 649 GNMKH-GNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVL 707

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           P  V Y  LI        V+EA+ L  EM  +G+
Sbjct: 708 PDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 201/441 (45%), Gaps = 79/441 (17%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           GY R      A  +F  M   GC+    SY  ++  L +   ++ A   +  M+  G  P
Sbjct: 112 GYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSP 171

Query: 154 CVASLNVLIKALCKNS----------------------------------GTMDAAFKIF 179
            V +   LI  LCK+                                   G M+ A KI 
Sbjct: 172 NVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIK 231

Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
             M   GC PD +TY TLI GLC   K  EA+EL      +  +PTVVT+T+LING C +
Sbjct: 232 ELMEKNGCHPDDWTYNTLIYGLCD-QKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMA 290

Query: 240 KSVEEAMR-----------------------------------LFEEMRSKGVEPNVFTY 264
           +  ++A+R                                   L  E+ + G+ PNV TY
Sbjct: 291 EKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITY 350

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           +S++DG CK G    A+E+L+MM     +PN  TY++L+ GL K+ KL +A+ +L +M+ 
Sbjct: 351 TSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQK 410

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384
            G+ P+   Y  ++   CD   +  A    + M   G+ P+   +++       +   LC
Sbjct: 411 DGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAV-------LTDALC 463

Query: 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
           K    RA + Y  +  + +++  + Y++LI  F K G+   +A +++ ++ +GC PD  T
Sbjct: 464 KA--GRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT 521

Query: 445 WSAVMTALWDRRKMRQAAELL 465
           +S ++ AL  ++++ +A  +L
Sbjct: 522 YSVLLHALCKQKRLNEALPIL 542



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 217/467 (46%), Gaps = 45/467 (9%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D   F  +I+ L+  ++ + A++LL+ ++          + SI  GY +  +   A+ V 
Sbjct: 311 DLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVL 370

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
             M+  GC+P   +Y +++  LV++ +L  A      M++ GI P V +   L++  C +
Sbjct: 371 KMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQC-D 429

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA------------------ 210
               D AF++F  M   G  PD + Y  L + LC+ G+  EA                  
Sbjct: 430 EHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTT 489

Query: 211 --------------KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
                           L + M  + C+P   TY+ L++ LC+ K + EA+ + ++M  +G
Sbjct: 490 LIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRG 549

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
           ++  +F Y+ L+D + + G    A  +   M S  H+P+  TY+  +N  CKEG+L++A 
Sbjct: 550 IKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAE 609

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-- 374
           +++ +M+ +G+ PD   Y  +I     +G    A + L  MV     PN  T+ L ++  
Sbjct: 610 DLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHL 669

Query: 375 -------IHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
                  + +    G+    + +  +Q+   M    ++    TYSSLI  FCK G + ++
Sbjct: 670 LKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEA 729

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             ++D +   G  P+E  ++ ++    D +   +A  L  + +M++C
Sbjct: 730 CLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKA--LSFVSIMSEC 774



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 189/361 (52%), Gaps = 10/361 (2%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           RV+ ++ + G  P   +Y T++    +E  L  A R++R + E G++P   + N L+   
Sbjct: 54  RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGY 113

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C+ +G +  A  +F  MP  GC  + Y+Y  LI GLC    + +A  LF  M+   CSP 
Sbjct: 114 CR-TGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPN 172

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           V  +T LI+GLC+S  V +A  LF+ M   GV P+V TY++++ G  K G  + A+++ +
Sbjct: 173 VRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKE 232

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
           +M      P+  TY+TL+ GLC + K +EA E+L+    +G  P    +  +I+ +C   
Sbjct: 233 LMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAE 291

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
           K+ +A    ++M+            L +++   ++  L K D    A ++   +    + 
Sbjct: 292 KFDDALRMKNKMMSSKC-------KLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLV 344

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            + +TY+S+I  +CK G +  +  ++  +  DGC P+  T++++M  L   +K+ +A  L
Sbjct: 345 PNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMAL 404

Query: 465 L 465
           L
Sbjct: 405 L 405



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 184/388 (47%), Gaps = 30/388 (7%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +LQ    E D + A  +F+       NG + D   ++++   L  A +   AE+ 
Sbjct: 418 ITYTTLLQGQCDEHDFDNAFRLFEMMEQ---NGLKPDEHAYAVLTDALCKAGR---AEEA 471

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
              + ++   +T+  + ++  G+ +      A  + ++M + GC P   +Y  +L  L +
Sbjct: 472 YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCK 531

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
           + +L  A      M   GI+  + +  +LI  + +  G  D A +++ EM + G  P + 
Sbjct: 532 QKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLR-EGKHDHAKRMYNEMTSSGHKPSAT 590

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY   IN  C+ G++ +A++L  +ME +  +P VVTY  LI+G      ++ A    + M
Sbjct: 591 TYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRM 650

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCS------SQAM----------ELLQMMISKRHRPNI 296
                EPN +TY  L+  L KG  +      +  M          +LL+ M+     P +
Sbjct: 651 VGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTV 710

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
            TYS+L+ G CK G+L+EA  +LD M  +GL P+  +Y  +I C CD   +++A +F+  
Sbjct: 711 TTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSI 770

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLC 384
           M   G  P   ++ L       +V GLC
Sbjct: 771 MSECGFQPQLESYRL-------LVVGLC 791



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 121/284 (42%), Gaps = 26/284 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVH 99
           ++G +   +T+++ I+      +   AEDL+ ++ +E      +T +I +  C   G + 
Sbjct: 582 SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYID 641

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R    ++   +M    CEP   +Y  +L  L++ N       + R +   G+        
Sbjct: 642 RAFSTLK---RMVGASCEPNYWTYCLLLKHLLKGN-----LAYVRSVDTSGMW------- 686

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
                   N   +D  +++   M   G  P   TY +LI G C+ G++ EA  L   M  
Sbjct: 687 --------NLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCG 738

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K  SP    YT LI   C +K  E+A+     M   G +P + +Y  L+ GLC  G   +
Sbjct: 739 KGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEK 798

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
              L   ++   +  + V +  L +GL K G +    ++L  M+
Sbjct: 799 VKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIME 842



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 31/225 (13%)

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
           S+ A++ ++   S R   +   Y+  L  L +    +    +  ++   GL PD   Y  
Sbjct: 14  SADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNT 73

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLT------------------WSLHI----- 373
           +I  +C  G    A  +   ++ GG+ P   T                  W   +     
Sbjct: 74  MIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMG 133

Query: 374 -----RIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
                  +  ++QGLC     R A  ++L M+    S +   ++ LI+  CK G +  + 
Sbjct: 134 CQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 193

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
            + D +  +G +P   T++A++       +M  A  L + ELM K
Sbjct: 194 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDA--LKIKELMEK 236



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 14/122 (11%)

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYS 411
           ++V  G+ P+ +T+       NT+++  CK    T  +R F++ L      +  ++ T +
Sbjct: 58  QLVQDGLLPDTVTY-------NTMIKSYCKEGDLTTAHRYFRLLLE---GGLEPETFTCN 107

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
           +L+  +C+ G++ K+  +   + L GC  +E +++ ++  L D + +R+A  L L+   +
Sbjct: 108 ALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRD 167

Query: 472 KC 473
            C
Sbjct: 168 GC 169



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 370 SLHIRIHNTVVQGLCKTDPNRAF-QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +L  + +N  ++ L + D      +VY  +    +  D++TY+++I  +CK+GD+  + R
Sbjct: 30  ALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHR 89

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
               L+  G  P+  T +A++       ++R+A  L L+  +  C   E
Sbjct: 90  YFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNE 138


>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
          Length = 642

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 192/371 (51%), Gaps = 27/371 (7%)

Query: 104 AMRVFDKMKEFGCEPTPKS--YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           A+  F  ++     P P +  Y  ++   + E++L L    Y+ +   G QP V + N+L
Sbjct: 92  AIPAFRSLRALASAPPPPTPVYNRLILTALRESRLDLVEALYKDLLLAGAQPDVFTRNLL 151

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           ++ALC ++G M+ A ++F  MP R    + +++G L  G CR G+  +A ++   M    
Sbjct: 152 LRALC-DAGRMELAQRVFEAMPVR----NEFSFGILARGYCRAGRSVDALKVLDGMP--- 203

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            S  +V   +++ G C+   VEEA RL E MR +G+ PNV T++S +  LCK G    A 
Sbjct: 204 -SMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAY 262

Query: 282 ELLQ-MMISKRH---RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            + + M    +H   RP+ VT+  +L+G C  G + EA  ++D M+  G       Y + 
Sbjct: 263 RIFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRW 322

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF---QV 394
           +S     G+  EA   L EM    I PN  T+       N +V GLCK    +AF   +V
Sbjct: 323 LSGLVRNGRVGEAHELLREMAHERIHPNSYTY-------NIIVSGLCKE--GKAFDARRV 373

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              +R+  +S D +TY+SL+  +C KG+I  + RI+DE+   GC P+  T++ ++ +LW 
Sbjct: 374 ENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWR 433

Query: 455 RRKMRQAAELL 465
             +  +A  LL
Sbjct: 434 AGRTTEAERLL 444



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 196/428 (45%), Gaps = 50/428 (11%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T +L++  L  A +     +L  RV +      E  F  + RGY R  R +DA
Sbjct: 140 GAQPDVFTRNLLLRALCDAGRM----ELAQRVFEAMPVRNEFSFGILARGYCRAGRSVDA 195

Query: 105 MRVFDKMKEFG---CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
           ++V D M       C        TV+A   +E  ++ A R    MR  G+ P V + N  
Sbjct: 196 LKVLDGMPSMNLVVCN-------TVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSR 248

Query: 162 IKALCKNSGTMDAAFKIFREMP---NRGCT-PDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           I ALCK    +D A++IF++M      G   PD  T+  +++G C  G + EA+ L   M
Sbjct: 249 ISALCKAGRVLD-AYRIFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIM 307

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                   V +Y   ++GL ++  V EA  L  EM  + + PN +TY+ ++ GLCK G +
Sbjct: 308 RCGGFLRRVESYNRWLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKA 367

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A  +   + S    P++VTY++LL+  C +G +  A  ILD M  +G  P++  Y  +
Sbjct: 368 FDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVL 427

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK------------ 385
           +      G+  EA   L+ M   G       +SL     N ++ GLC+            
Sbjct: 428 LQSLWRAGRTTEAERLLERMSEKG-------YSLDTAGCNIIIDGLCRNSKLDVAMGIVD 480

Query: 386 -------TDPNRAFQVYLS-MRNRSIS----VDSLTYSSLITCFCKKGDIHKSARIVDEL 433
                  T   R    +LS + + SIS     D +TYS LI+  CK+G   ++ + + E+
Sbjct: 481 GMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEM 540

Query: 434 VLDGCLPD 441
           ++    PD
Sbjct: 541 IVKDISPD 548



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 195/412 (47%), Gaps = 36/412 (8%)

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK----SYI 124
           AE L++R+  +        F S      +  R LDA R+F  M+E      P+    ++ 
Sbjct: 226 AERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFD 285

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
            +L+   +   +  A      MR  G    V S N  +  L +N G +  A ++ REM +
Sbjct: 286 VMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRN-GRVGEAHELLREMAH 344

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
               P+SYTY  +++GLC+ GK ++A+ +   + +   SP VVTYTSL++  C   ++  
Sbjct: 345 ERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAA 404

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A R+ +EM  KG  PN FTY+ L+  L + G +++A  LL+ M  K +  +    + +++
Sbjct: 405 ANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGYSLDTAGCNIIID 464

Query: 305 GLCKEGKLQEAVEILDRMKLQGLK-----------------------PDAGLYGKIISCF 341
           GLC+  KL  A+ I+D M  +G                         PD   Y  +IS  
Sbjct: 465 GLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILISAL 524

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRN 400
           C  G++ EA   L EM++  I+P+ +       I++T + G CK      A +V   M  
Sbjct: 525 CKEGRFDEAKKKLLEMIVKDISPDSV-------IYDTFIHGYCKHGKTSLAIKVLRDMEK 577

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           +  +  + TY+ LI  F +K    +  +++ E+   G  P+  T+++++ + 
Sbjct: 578 KGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIKSF 629



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 168/382 (43%), Gaps = 32/382 (8%)

Query: 28  VNKALVIFDSATAEYANGF-RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           V  A  IF     ++ +G  R D  TF +M+S    A     A  L+D +         +
Sbjct: 258 VLDAYRIFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVE 317

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            +     G  R  R  +A  +  +M      P   +Y  +++ L +E +   A R    +
Sbjct: 318 SYNRWLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFI 377

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
           R   + P V +   L+ A C + G + AA +I  EM  +GC P+S+TY  L+  L R G+
Sbjct: 378 RSGVMSPDVVTYTSLLHAYC-SKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGR 436

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE-------- 258
             EA+ L + M  K  S        +I+GLC++  ++ AM + + M  +G          
Sbjct: 437 TTEAERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTALGRLGNS 496

Query: 259 ---------------PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
                          P+  TYS L+  LCK G   +A + L  MI K   P+ V Y T +
Sbjct: 497 FLSVVSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFI 556

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +G CK GK   A+++L  M+ +G  P    Y  +I  F +  K  E    + EM   G++
Sbjct: 557 HGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVS 616

Query: 364 PNRLTWSLHIRIHNTVVQGLCK 385
           PN LT+       N++++  C+
Sbjct: 617 PNVLTY-------NSLIKSFCQ 631



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 130/296 (43%), Gaps = 25/296 (8%)

Query: 41  EYANGFRHDNS-TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99
           E A+   H NS T+++++S L    +   A  + + +           + S+   Y    
Sbjct: 341 EMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKG 400

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
               A R+ D+M + GC P   +Y  +L  L    +   A R    M E G     A  N
Sbjct: 401 NIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGYSLDTAGCN 460

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRG-----------------------CTPDSYTYGT 196
           ++I  LC+NS  +D A  I   M   G                       C PD  TY  
Sbjct: 461 IIIDGLCRNS-KLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSI 519

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           LI+ LC+ G+  EAK+   EM  K  SP  V Y + I+G C+      A+++  +M  KG
Sbjct: 520 LISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKG 579

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             P+  TY+ L+ G  +   S + M+L+  M  K   PN++TY++L+   C++G L
Sbjct: 580 CNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIKSFCQQGML 635


>gi|297843350|ref|XP_002889556.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335398|gb|EFH65815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 503

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 246/477 (51%), Gaps = 24/477 (5%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           +W   +T + + Q+++ +K+   AL +F+ A   + + + H+ + ++ MI  L ++N+  
Sbjct: 4   RWPRVLTPSLLSQILKKQKNPVTALKLFEEAKVRFPS-YGHNGTVYATMIDILGNSNRVL 62

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
             + +++R+  + C+  + +F S  R + R  R  DA+ +F  + EF C     S+ T+L
Sbjct: 63  EMKYVIERMKGDSCECKDSVFASAIRTFSRAGRLDDAISLFKSLHEFNCVNWTLSFDTLL 122

Query: 128 AILVEENQLKLA---FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
             +V+E++L+ A   FR Y +  E+  +  + +LN+L+K LC+ + + D A ++F+EM  
Sbjct: 123 QEMVKESELEAACHIFRKYCYGWEVNSR--ITALNLLMKVLCQVNRS-DLASQVFQEMNY 179

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKEL----FKEMETKACSPTVVTYTSLINGLCQSK 240
           +GC PD  ++  L+ G C  GK+ EA  L    F  +  K     +V Y  L++ LC + 
Sbjct: 180 QGCYPDRDSFRILMKGFCLEGKLDEATHLLYSMFWRISQKGSGEDIVVYKILLDALCDAG 239

Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS--QAMELLQMMISKRHRPNIVT 298
            V++A+ +  ++  KG++     Y  +  G  +       +   LL   + +   P++ +
Sbjct: 240 EVDQAIEILGKILRKGLKAPKRCYHQIEAGHWESNSEGIKRVKRLLTETLIRGAIPSLDS 299

Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD-EM 357
           YS +   L +EGKL E  E+L  M+ +G +P   +YG  +   C  GK +EA + ++ EM
Sbjct: 300 YSAMATDLFEEGKLVEGEEVLLAMRRKGFEPTPFIYGAKVKALCKAGKLEEAVSVINKEM 359

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS--VDSLTYSSLIT 415
           + G   P        + ++N +++GLC    +     YL   ++ +S   +  TY +L+ 
Sbjct: 360 MEGHCLPT-------VGVYNVLIKGLCDEGKSMEAVGYLKKMSKQVSCVANEETYQTLMD 412

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
             C+     +++++++E+++    P   T+  ++  L D  + R  A + L E++++
Sbjct: 413 GLCRDSQFLEASQVMEEMLIKSHFPGVETYHVMIKGLCDMDR-RYEAVMWLEEMVSQ 468



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 137/317 (43%), Gaps = 46/317 (14%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL----KLAFRFYRHMREIGIQ 152
           +V+R   A +VF +M   GC P   S+  ++     E +L     L +  +  + + G  
Sbjct: 163 QVNRSDLASQVFQEMNYQGCYPDRDSFRILMKGFCLEGKLDEATHLLYSMFWRISQKGSG 222

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIF--------------------------------- 179
             +    +L+ ALC ++G +D A +I                                  
Sbjct: 223 EDIVVYKILLDALC-DAGEVDQAIEILGKILRKGLKAPKRCYHQIEAGHWESNSEGIKRV 281

Query: 180 ----REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235
                E   RG  P   +Y  +   L   GK+ E +E+   M  K   PT   Y + +  
Sbjct: 282 KRLLTETLIRGAIPSLDSYSAMATDLFEEGKLVEGEEVLLAMRRKGFEPTPFIYGAKVKA 341

Query: 236 LCQSKSVEEAMRLF-EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR- 293
           LC++  +EEA+ +  +EM      P V  Y+ L+ GLC  G S +A+  L+ M SK+   
Sbjct: 342 LCKAGKLEEAVSVINKEMMEGHCLPTVGVYNVLIKGLCDEGKSMEAVGYLKKM-SKQVSC 400

Query: 294 -PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
             N  TY TL++GLC++ +  EA ++++ M ++   P    Y  +I   CD+ +  EA  
Sbjct: 401 VANEETYQTLMDGLCRDSQFLEASQVMEEMLIKSHFPGVETYHVMIKGLCDMDRRYEAVM 460

Query: 353 FLDEMVLGGITPNRLTW 369
           +L+EMV   + P    W
Sbjct: 461 WLEEMVSQDMVPESSVW 477



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 11/249 (4%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ +  K+   G +   + Y  + A   E N   +  R  R + E  I+  + SL+    
Sbjct: 244 AIEILGKILRKGLKAPKRCYHQIEAGHWESNSEGIK-RVKRLLTETLIRGAIPSLDSY-S 301

Query: 164 ALCKN---SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF-KEMET 219
           A+  +    G +    ++   M  +G  P  + YG  +  LC+ GK+ EA  +  KEM  
Sbjct: 302 AMATDLFEEGKLVEGEEVLLAMRRKGFEPTPFIYGAKVKALCKAGKLEEAVSVINKEMME 361

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE--PNVFTYSSLMDGLCKGGCS 277
             C PTV  Y  LI GLC      EA+   ++M SK V    N  TY +LMDGLC+    
Sbjct: 362 GHCLPTVGVYNVLIKGLCDEGKSMEAVGYLKKM-SKQVSCVANEETYQTLMDGLCRDSQF 420

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A ++++ M+ K H P + TY  ++ GLC   +  EAV  L+ M  Q + P++ ++  +
Sbjct: 421 LEASQVMEEMLIKSHFPGVETYHVMIKGLCDMDRRYEAVMWLEEMVSQDMVPESSVWKAL 480

Query: 338 IS--CFCDI 344
               CFC I
Sbjct: 481 AESVCFCAI 489



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 114/248 (45%), Gaps = 15/248 (6%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G    NS     + +L++    R A   LD  +    D+ E+         G++   ++ 
Sbjct: 269 GHWESNSEGIKRVKRLLTETLIRGAIPSLDSYSAMATDLFEE---------GKL---VEG 316

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLIK 163
             V   M+  G EPTP  Y   +  L +  +L+ A     + M E    P V   NVLIK
Sbjct: 317 EEVLLAMRRKGFEPTPFIYGAKVKALCKAGKLEEAVSVINKEMMEGHCLPTVGVYNVLIK 376

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LC    +M+A   + +      C  +  TY TL++GLCR  +  EA ++ +EM  K+  
Sbjct: 377 GLCDEGKSMEAVGYLKKMSKQVSCVANEETYQTLMDGLCRDSQFLEASQVMEEMLIKSHF 436

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V TY  +I GLC      EA+   EEM S+ + P    + +L + +C   C+   +E+
Sbjct: 437 PGVETYHVMIKGLCDMDRRYEAVMWLEEMVSQDMVPESSVWKALAESVC--FCAIDVVEI 494

Query: 284 LQMMISKR 291
           L+ +IS +
Sbjct: 495 LEHLISSK 502


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 224/458 (48%), Gaps = 33/458 (7%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC-------- 81
           KAL +F S+  +   GF+H + + S ++  L+S+N F  ++ LL ++   +         
Sbjct: 21  KALSLFTSSALQ---GFQHTHQSISFILHLLISSNLFSHSQSLLLKLISGQISSSSFTPS 77

Query: 82  ----DITED----------IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
               ++T+           I  +I   + R   P  A+  F++M   G  P   ++  +L
Sbjct: 78  SLFHELTQPHLDSFPTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLL 137

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            +L++ N  + A+R +   +   ++  V S  ++IK  C+  G +D  F++  +M   G 
Sbjct: 138 ILLIKSNFFEKAWRVFNETKG-NVKLDVYSFGIMIKGCCE-VGYLDKGFEVLGQMEEMGL 195

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           +P+   Y TLI+G C+ G I   K+LF +M          TYT LING  +    ++ + 
Sbjct: 196 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 255

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L+E+M+  G+ PNV+TY+S++   C  G  + A EL   M  +    N+VTY+TL+ GLC
Sbjct: 256 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 315

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           +E ++ EA  ++ RMK  GL P+   Y  +I  +C IG   +A++  ++M   G +P+  
Sbjct: 316 QERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLA 375

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           T+++ I   +        TD  R       M  R +S   +TY+ L+    +  +I K+ 
Sbjct: 376 TYNILIAGFSEAKNSAGVTDMVR------EMEARGLSPSKVTYTILMDALVRSDNIEKAF 429

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +I   +   G + D   +  ++  L     M++A++L 
Sbjct: 430 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLF 467



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 179/353 (50%), Gaps = 15/353 (4%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           ++F KM E        +Y  ++    +    K     Y  M+  GI P V + N +I   
Sbjct: 220 QLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMI-CR 278

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C N G ++ AF++F EM  RG   +  TY TLI GLC+  ++ EA+ L   M+    SP 
Sbjct: 279 CCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPN 338

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           +++Y +LI+G C   ++++A  LF +M+S G  P++ TY+ L+ G  +   S+   ++++
Sbjct: 339 LISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVR 398

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M ++   P+ VTY+ L++ L +   +++A +I   M+  GL  D  +YG +I   C +G
Sbjct: 399 EMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVG 458

Query: 346 KYQEAANF---LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
             +EA+     LDEM L    PN +       I+NT++ G CK   + RA ++   M   
Sbjct: 459 DMKEASKLFKSLDEMHL---KPNDV-------IYNTMIYGYCKEGSSYRALRLLKEMGEN 508

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
            +  +  +Y+S I   CK     ++  ++ +++  G  P    W+ +  A +D
Sbjct: 509 GMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISKARFD 561



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           +K+T   ++  +    ++ KA  I+ S       G   D   + ++I  L      + A 
Sbjct: 408 SKVTYTILMDALVRSDNIEKAFQIYSSMEKA---GLVADIYIYGVLIHGLCVVGDMKEAS 464

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
            L   +++      + I+ ++  GY +      A+R+  +M E G  P   SY + + IL
Sbjct: 465 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQIL 524

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            ++ +   A    + M E+G++P ++  N++ KA   N
Sbjct: 525 CKDEKWTEAEVLLKDMIELGLKPSISIWNMISKARFDN 562



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS--ICRGYGRVHR 100
           A G      T+++++  LV ++    A  +   +  EK  +  DI++   +  G   V  
Sbjct: 402 ARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM--EKAGLVADIYIYGVLIHGLCVVGD 459

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A ++F  + E   +P    Y T++    +E     A R  + M E G+ P VAS N 
Sbjct: 460 MKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNS 519

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTP 189
            I+ LCK+    +A   + ++M   G  P
Sbjct: 520 TIQILCKDEKWTEAEV-LLKDMIELGLKP 547


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 208/441 (47%), Gaps = 12/441 (2%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           A+ +F+      A     D +TF ++IS    A         L ++ K         F  
Sbjct: 125 AVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTP 184

Query: 91  ICRGYGRVHRPLDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           + R      R  DAM  V  +M E GC P   SY T+L  L  E + + A      M E 
Sbjct: 185 LLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAED 244

Query: 150 G--IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           G    P V S   +I    K  G +  A+ +F +M + G  P+  T  ++I+GLC++  +
Sbjct: 245 GDNCPPNVVSYTTVIHGFFK-EGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAM 303

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A+ + ++M  +   P   TY SLI+G   S    EA+R+ +EM   G  PNV TYS L
Sbjct: 304 DKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSML 363

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +D LCK G  ++A E+   MI    +PN  TY +LL+G   EG L +   + D M   G+
Sbjct: 364 IDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGM 423

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           +P   ++   I  +C  G+  EA+   ++M   G  P+       I  + TV+ GLCK  
Sbjct: 424 RPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPD-------IVAYTTVIDGLCKIG 476

Query: 388 P-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A   +  M +  +S D +T+++LI  F   G   K+  +  E++  G  P+  T++
Sbjct: 477 RLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFN 536

Query: 447 AVMTALWDRRKMRQAAELLLL 467
           +++  L+   K+ +A +L  L
Sbjct: 537 SMIDKLFKEGKVTEARKLFDL 557



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 175/345 (50%), Gaps = 24/345 (6%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNK--EKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           +T++ +I   +S+ Q+  A  +L  +++  ++ ++     L  C     +H   +A  +F
Sbjct: 323 TTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHA--EAREIF 380

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M + G +P   +Y ++L     E  L         M + G++P     N+ I A CK 
Sbjct: 381 NSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCK- 439

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +D A   F +M  +G  PD   Y T+I+GLC++G++ +A   F +M     SP ++T
Sbjct: 440 CGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIIT 499

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           + +LI+G       E+A  LF EM  +G+ PNV T++S++D L K G  ++A +L  +M 
Sbjct: 500 FNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMP 559

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA-------------GLYG 335
               +PN+V+Y+T+++G    G++ E +++LD M L GLKP A             GL  
Sbjct: 560 RAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKP 619

Query: 336 KIISC------FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
            +++C       C+ G+ ++      EM+      + +T ++ +R
Sbjct: 620 DVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENIKLR 664



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 56/272 (20%)

Query: 243 EEAMRLFEEM---------------------------------------------RSKGV 257
           E+A+ LF+E+                                              +K V
Sbjct: 81  EDALDLFDELLQRARPGSIYALNQLLTTVARAPVSSSVRDGPALAVSMFNRMARAGAKKV 140

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P++ T+  L+   C  GC +     L  +I    R   VT++ LL  LC E +  +A+ 
Sbjct: 141 APDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMN 200

Query: 318 I-LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG--ITPNRLTWSLHIR 374
           I L RM   G  PD   Y  ++   C   K +EAA  +  M   G    PN ++++    
Sbjct: 201 IVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYT---- 256

Query: 375 IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
              TV+ G  K  D  +A+ ++  M +  I  + +T +S+I   CK   + K+  ++ ++
Sbjct: 257 ---TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQM 313

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           + +  +P+  T+++++       +  +A  +L
Sbjct: 314 IDEHIMPNCTTYNSLIHGYLSSGQWTEAVRIL 345


>gi|225435096|ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Vitis vinifera]
          Length = 501

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 179/344 (52%), Gaps = 6/344 (1%)

Query: 22  IRAEKDVNKALVIFDSATAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           +++ +D + AL +F+    +Y   GF+HD  ++S ++ KL  +  F   E LLD +    
Sbjct: 97  LKSVQDPDDALSLFN----QYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNIN 152

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
               E +F+++ + YG+   P  A+ +F +M  F C  T  S+ T+L +LVE ++   A 
Sbjct: 153 IRCRETLFIALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAI 212

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
             +    ++G +    S N++IK      G  D A+++F EM ++   P   T+ +LI  
Sbjct: 213 GIFDRSTKMGFRRNSISFNIIIKGWL-GKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGF 271

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC  G +  A  L ++M  K   P  VTY  L+ GLC     +EA ++  +M  +G +P 
Sbjct: 272 LCGKGDLDGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPR 331

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           +  +  LM  L + G    +  LL  M  +R +P++VTY+ L+N LCKEG+  EA ++L 
Sbjct: 332 LLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLV 391

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
            M++ G +P+A  Y  ++  FC +  ++     L  M++ G  P
Sbjct: 392 EMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCP 435



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 178/376 (47%), Gaps = 11/376 (2%)

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           V  P DA+ +F++ ++ G +    SY  ++  L      +       +++ I I+ C  +
Sbjct: 100 VQDPDDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIR-CRET 158

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L + +      S   + A ++F+ MP+  C     ++ TL+N L    +  +A  +F   
Sbjct: 159 LFIALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRS 218

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                    +++  +I G       ++A ++FEEM  K V+P V T++SL+  LC  G  
Sbjct: 219 TKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDL 278

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             AM LL+ MI KRHRPN VTY+ L+ GLC  GK +EA +++  M  QG KP    +G +
Sbjct: 279 DGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVL 338

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYL 396
           +S     G+  ++   L EM      P+ +T+       N ++  LCK      A++V +
Sbjct: 339 MSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTY-------NILINHLCKEGRALEAYKVLV 391

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+      ++ TY  ++  FC+  D     +++  +++ G  P   ++  ++  L    
Sbjct: 392 EMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNG 451

Query: 457 KMRQAAELLLLELMNK 472
           K+  A    +LE M K
Sbjct: 452 KIDGAC--FVLEEMEK 465


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 170/334 (50%), Gaps = 16/334 (4%)

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
           FY  + + G    V   N+L+   CK     DA  K+F E+  R   P   ++ TLING 
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQ-KVFDEITKRSLRPTVVSFNTLINGY 285

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C++G +     L   ME     P V TY++LIN LC+   ++ A RLF EM  +G+ PN 
Sbjct: 286 CKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPND 345

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             +++L+ G  + G      E  Q M+SK  +P+IV Y+TL+NG CK G L  A  I+D 
Sbjct: 346 VIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDG 405

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M  +GL+PD   Y  +I  FC  G    A     EM   GI  +R+ +S        ++ 
Sbjct: 406 MIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFS-------ALIC 458

Query: 382 GLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           G+CK     D  RA +    M    +  D +TY+ ++  FCKKGD     +++ E+  DG
Sbjct: 459 GMCKEGRVIDAERALR---EMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDG 515

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
            +P+  T++ ++  L    +M+  A++LL  ++N
Sbjct: 516 HIPNVVTYNVLLNGLCKLGQMKN-ADMLLDAMLN 548



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 161/300 (53%), Gaps = 9/300 (3%)

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210
           ++P V S N LI   CK  G +D  F++   M      PD +TY  LIN LC+  K+  A
Sbjct: 271 LRPTVVSFNTLINGYCK-VGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGA 329

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
             LF EM  +   P  V +T+LI+G  ++  ++     +++M SKG++P++  Y++L++G
Sbjct: 330 HRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNG 389

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
            CK G    A  ++  MI +  RP+ VTY+TL++G C+ G +  A+EI   M   G++ D
Sbjct: 390 FCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELD 449

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389
              +  +I   C  G+  +A   L EM+  G+ P+ +T+++       ++   CK  D  
Sbjct: 450 RVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTM-------MMDAFCKKGDAQ 502

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
             F++   M++     + +TY+ L+   CK G +  +  ++D ++  G +PD+ T++ ++
Sbjct: 503 TGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLL 562



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 184/382 (48%), Gaps = 10/382 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +   F+++++K         A+ + D + K     T   F ++  GY +V      
Sbjct: 235 GFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVG 294

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+   M++    P   +Y  ++  L +EN++  A R +  M E G+ P       LI  
Sbjct: 295 FRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHG 354

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             +N G +D   + +++M ++G  PD   Y TL+NG C+ G +  A+ +   M  +   P
Sbjct: 355 HSRN-GQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRP 413

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTYT+LI+G C+   V+ A+ + +EM   G+E +   +S+L+ G+CK G    A   L
Sbjct: 414 DKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERAL 473

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+    +P+ VTY+ +++  CK+G  Q   ++L  M+  G  P+   Y  +++  C +
Sbjct: 474 REMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKL 533

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404
           G+ + A   LD M+  G+ P+ +T+       NT+++G  +     A + Y       I 
Sbjct: 534 GQMKNADMLLDAMLNVGVVPDDITY-------NTLLEGHHRH--ANASKHYKQKPEIGIV 584

Query: 405 VDSLTYSSLITCFCKKGDIHKS 426
            D  +Y SL+    +    H++
Sbjct: 585 ADLASYKSLVNELYRASKDHRN 606



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 146/320 (45%), Gaps = 50/320 (15%)

Query: 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241
           +P RGC       G L++ + +L         + E+        V  +  L+N  C+  +
Sbjct: 203 VPIRGC-------GNLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGN 255

Query: 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           + +A ++F+E+  + + P V ++++L++G CK G       L   M   R RP++ TYS 
Sbjct: 256 ICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSA 315

Query: 302 LLNGLCKEGKLQEAVEIL-----------------------------------DRMKLQG 326
           L+N LCKE K+  A  +                                     +M  +G
Sbjct: 316 LINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKG 375

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK- 385
           L+PD  LY  +++ FC  G    A N +D M+  G+ P+++T++       T++ G C+ 
Sbjct: 376 LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYT-------TLIDGFCRG 428

Query: 386 TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
            D + A ++   M    I +D + +S+LI   CK+G +  + R + E++  G  PD+ T+
Sbjct: 429 GDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTY 488

Query: 446 SAVMTALWDRRKMRQAAELL 465
           + +M A   +   +   +LL
Sbjct: 489 TMMMDAFCKKGDAQTGFKLL 508


>gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera]
          Length = 1093

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 179/344 (52%), Gaps = 6/344 (1%)

Query: 22  IRAEKDVNKALVIFDSATAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           +++ +D + AL +F+    +Y   GF+HD  ++S ++ KL  +  F   E LLD +    
Sbjct: 459 LKSVQDPDDALSLFN----QYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNIN 514

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
               E +F+++ + YG+   P  A+ +F +M  F C  T  S+ T+L +LVE ++   A 
Sbjct: 515 IRCRETLFIALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAI 574

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
             +    ++G +    S N++IK      G  D A+++F EM ++   P   T+ +LI  
Sbjct: 575 GIFDRSTKMGFRRNSISFNIIIKGWL-GKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGF 633

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC  G +  A  L ++M  K   P  VTY  L+ GLC     +EA ++  +M  +G +P 
Sbjct: 634 LCGKGDLDGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPR 693

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           +  +  LM  L + G    +  LL  M  +R +P++VTY+ L+N LCKEG+  EA ++L 
Sbjct: 694 LLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLV 753

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
            M++ G +P+A  Y  ++  FC +  ++     L  M++ G  P
Sbjct: 754 EMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCP 797



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 178/376 (47%), Gaps = 11/376 (2%)

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           V  P DA+ +F++ ++ G +    SY  ++  L      +       +++ I I+ C  +
Sbjct: 462 VQDPDDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIR-CRET 520

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L + +      S   + A ++F+ MP+  C     ++ TL+N L    +  +A  +F   
Sbjct: 521 LFIALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRS 580

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                    +++  +I G       ++A ++FEEM  K V+P V T++SL+  LC  G  
Sbjct: 581 TKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDL 640

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             AM LL+ MI KRHRPN VTY+ L+ GLC  GK +EA +++  M  QG KP    +G +
Sbjct: 641 DGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVL 700

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYL 396
           +S     G+  ++   L EM      P+ +T+       N ++  LCK      A++V +
Sbjct: 701 MSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTY-------NILINHLCKEGRALEAYKVLV 753

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+      ++ TY  ++  FC+  D     +++  +++ G  P   ++  ++  L    
Sbjct: 754 EMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNG 813

Query: 457 KMRQAAELLLLELMNK 472
           K+  A    +LE M K
Sbjct: 814 KIDGAC--FVLEEMEK 827


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 219/455 (48%), Gaps = 45/455 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           ANG   D+ T++ M+  L  AN+   A ++ +++ + +       + ++  GYG   +  
Sbjct: 159 ANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFD 218

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  + ++ +  GC P+  +Y  +L  L ++ +   A R +  M+   + P + + N++I
Sbjct: 219 EAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIII 277

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK +G ++AAFK+   M   G  P+  T   +I+ LC+  K+ EA  +F+ M+ K C
Sbjct: 278 GMLCK-AGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVC 336

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL--------------- 267
           SP   T+ SLI+GL +   V++A R++E M      PNV  Y+SL               
Sbjct: 337 SPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHK 396

Query: 268 --------------------MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
                               MD + K G + +   L + + ++   P+  +YS L++ L 
Sbjct: 397 MYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLV 456

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K G  +E  E+   MK QG   D   Y  +I  FC  GK  +A   L+EM   G  P  +
Sbjct: 457 KAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVV 516

Query: 368 TWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           T+        +VV GL K D  + A+ ++   ++  I ++ + YSSLI  F K G + ++
Sbjct: 517 TYG-------SVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEA 569

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             +++E++  G  P+  TW+ ++  L    ++ +A
Sbjct: 570 YLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEA 604



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 224/485 (46%), Gaps = 80/485 (16%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ MI    SA +F  A  LL+R   + C  +   +  I    G+  +   A+R+F++M
Sbjct: 203 AYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEM 262

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K     P   +Y  ++ +L +   ++ AF+    M+E G+ P V ++N++I  LCK +  
Sbjct: 263 KR-DAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCK-AQK 320

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  IF  M  + C+PD  T+ +LI+GL + G++ +A  +++ M      P VV YTS
Sbjct: 321 LDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTS 380

Query: 232 LINGLCQ-------SKSVEEAMR----------------------------LFEEMRSKG 256
           LI    +        K  +E MR                            LFEE++++G
Sbjct: 381 LIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARG 440

Query: 257 VEPNVFTYS-----------------------------------SLMDGLCKGGCSSQAM 281
             P+  +YS                                   +++DG CK G  ++A 
Sbjct: 441 FLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAY 500

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           +LL+ M +  H P +VTY ++++GL K  +L EA  + +  K  G++ +  +Y  +I  F
Sbjct: 501 QLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGF 560

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRN 400
             +G+  EA   ++EM+  G+TPN  TW       N ++ GL K +  N A   + SM++
Sbjct: 561 GKVGRVDEAYLVMEEMMQKGLTPNVYTW-------NCLLDGLVKAEEINEALVCFQSMKD 613

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
              + + +TY  LI   CK    +K+     E+   G  P+  T++A+++ L     + Q
Sbjct: 614 LKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQ 673

Query: 461 AAELL 465
           A+ L 
Sbjct: 674 ASSLF 678



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 206/415 (49%), Gaps = 9/415 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D +TF  +I  L    +   A  + +R+          ++ S+ R + +  R  D  +++
Sbjct: 339 DGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMY 398

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            +M   GC P      T +  + +  + +     +  ++  G  P   S ++LI +L K 
Sbjct: 399 KEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVK- 457

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G     ++++  M ++GC  D+  Y T+I+G C+ GK+ +A +L +EM+T    PTVVT
Sbjct: 458 AGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVT 517

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y S+++GL +   ++EA  LFEE +S G+E N   YSSL+DG  K G   +A  +++ M+
Sbjct: 518 YGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMM 577

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            K   PN+ T++ LL+GL K  ++ EA+     MK     P+   Y  +I+  C + K+ 
Sbjct: 578 QKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFN 637

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407
           +A  F  EM   G+ PN +T++        ++ GL K+ +  +A  ++   R      DS
Sbjct: 638 KAFVFWQEMQKQGLKPNTITYT-------AMISGLAKSGNVAQASSLFERFRASGGIPDS 690

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
            +Y+++I           + ++ +E  L GC     T  A++ AL     + QAA
Sbjct: 691 ASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQAA 745



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 209/455 (45%), Gaps = 41/455 (9%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG-YGRVHRPLD 103
           G+  +    + +I       +   A  LLD +     D  + +  ++C   +G+V +   
Sbjct: 91  GYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFD-ADIVLYNVCIDCFGKVGKVDM 149

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A + F +MK  G  P   +Y +++ +L + N+L  A   +  M +    PC  + N +I 
Sbjct: 150 AWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIM 209

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
               ++G  D A+ +      +GC P    Y  ++  L + GK  +A  +F+EM+  A  
Sbjct: 210 GY-GSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDA-M 267

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P + TY  +I  LC++ +VE A ++ + M+  G+ PNV T + ++D LCK     +A  +
Sbjct: 268 PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSI 327

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + M  K   P+  T+ +L++GL K+G++ +A  I +RM      P+  +Y  +I  F  
Sbjct: 328 FEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFK 387

Query: 344 IGKYQEAANFLDEMVLGGITPNRL---------------------------------TWS 370
             + ++      EM+  G +P+ +                                 T S
Sbjct: 388 CDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRS 447

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
             I IH+ V  G  +      +++Y +M+++   +D+  Y+++I  FCK G ++K+ +++
Sbjct: 448 YSILIHSLVKAGFAR----ETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLL 503

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +E+   G  P   T+ +V+  L    ++ +A  L 
Sbjct: 504 EEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLF 538



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 191/420 (45%), Gaps = 10/420 (2%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FR   S ++ +I  L    +      L +++ +   ++   +  ++ R + R  R   A+
Sbjct: 57  FRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAAL 116

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            + D+MK    +     Y   +    +  ++ +A++F+  M+  G+ P   +   ++  L
Sbjct: 117 SLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVL 176

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           CK +  +D A +IF +M      P +Y Y T+I G    GK  EA  L +    K C P+
Sbjct: 177 CK-ANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPS 235

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           VV Y  ++  L +    ++A+R+FEEM+   + PN+ TY+ ++  LCK G    A ++  
Sbjct: 236 VVAYNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRD 294

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M      PN+ T + +++ LCK  KL EA  I + M  +   PD   +  +I      G
Sbjct: 295 AMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQG 354

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSIS 404
           +  +A    + M+     PN       + ++ ++++   K D      ++Y  M     S
Sbjct: 355 RVDDAYRIYERMLDADQIPN-------VVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCS 407

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            D +  ++ + C  K G+  K   + +E+   G LPD  ++S ++ +L      R+  EL
Sbjct: 408 PDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYEL 467



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 165/357 (46%), Gaps = 10/357 (2%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
           ++  +M   G  PT  + + ++A  V+  +L  AF   + MR    +P  ++   LI AL
Sbjct: 12  QILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGAL 71

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
            +  G  D    +F +M   G   + +   TLI    R G++  A  L  EM++      
Sbjct: 72  SE-VGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDAD 130

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           +V Y   I+   +   V+ A + F EM++ G+ P+  TY+S+M  LCK     +A+E+ +
Sbjct: 131 IVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFE 190

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M   R  P    Y+T++ G    GK  EA  +L+R + +G  P    Y  I++C    G
Sbjct: 191 QMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKG 250

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404
           K  +A    +EM    + PN  T+       N ++  LCK  +   AF+V  +M+   + 
Sbjct: 251 KTDKALRIFEEMKRDAM-PNLPTY-------NIIIGMLCKAGNVEAAFKVRDAMKEAGLF 302

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  T + +I   CK   + ++  I + +    C PD  T+ +++  L  + ++  A
Sbjct: 303 PNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDA 359



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 118/257 (45%), Gaps = 10/257 (3%)

Query: 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
           +++  EM      PT  T   L+    +S+ + EA  L + MR     P    Y++L+  
Sbjct: 11  EQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGA 70

Query: 271 LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330
           L + G S + + L   M    +  N+   +TL+    +EG++  A+ +LD MK      D
Sbjct: 71  LSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDAD 130

Query: 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-N 389
             LY   I CF  +GK   A  F  EM   G+ P+ +T++  + +       LCK +  +
Sbjct: 131 IVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGV-------LCKANRLD 183

Query: 390 RAFQVYLSM-RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
            A +++  M +NR +   +  Y+++I  +   G   ++  +++     GC+P    ++ +
Sbjct: 184 EAVEIFEQMEQNRQVPC-AYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCI 242

Query: 449 MTALWDRRKMRQAAELL 465
           +T L  + K  +A  + 
Sbjct: 243 LTCLGKKGKTDKALRIF 259


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 211/458 (46%), Gaps = 100/458 (21%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+ V+ +M   G +P+ K+Y  ++  L ++   ++     + M ++G++P V +  + I
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICI 269

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF-------- 214
           + L + +G +D A++IFR M + GC PD  TY  LI+ LC  G++  AKELF        
Sbjct: 270 RVLGR-AGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGH 328

Query: 215 ---------------------------KEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                                       +ME     P VVT+T L++ LC+++  +EA  
Sbjct: 329 KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFA 388

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
            F+ MR +G+ PN+ TY++L+ GL + G    A++LL  M S   +P   TY+  ++   
Sbjct: 389 TFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFG 448

Query: 308 KEGKLQEAVEILDRMKLQ-----------------------------------GLKPDAG 332
           K G+  +AVE  ++MK +                                   GL PD+ 
Sbjct: 449 KSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSV 508

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT-----------------WSLHIRI 375
            Y  ++ C+  +G+  EA N L EM+  G  P+ +                  W +  R+
Sbjct: 509 TYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRM 568

Query: 376 -----------HNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                      +NT++ GL K     +A +++ SM  +  S +++++++L+ CFCK  ++
Sbjct: 569 KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEV 628

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
             + ++  ++ +  C PD  T++ V+  L    K+  A
Sbjct: 629 ELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHA 666



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 142  FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
            F +  +++GI P +AS N LI  L +   T + A+ +F++M N GC PD++T+  L+   
Sbjct: 775  FDKFTKKLGISPTLASYNCLIGELLEVHYT-EKAWDLFKDMKNVGCAPDAFTFNMLLAVH 833

Query: 202  CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
             + GKI E  EL+KEM ++ C P  +TY  +I+ L +S ++++A+  F ++ S    P  
Sbjct: 834  GKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTP 893

Query: 262  FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
             TY  L+DGL K G   +AM L + M     +PN   ++ L+NG  K G  + A ++  R
Sbjct: 894  RTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKR 953

Query: 322  MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
            M  +G++PD   Y  ++ C C  G+  EA  + +E+   G+ P+ + +       N ++ 
Sbjct: 954  MVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAY-------NRIIN 1006

Query: 382  GLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
            GL K+     A  +Y  MRNR I  D  TY+SL+      G + ++ R+ +EL L G  P
Sbjct: 1007 GLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEP 1066

Query: 441  DEGTWSAVM 449
            D  T++A++
Sbjct: 1067 DVFTYNALI 1075



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 201/367 (54%), Gaps = 11/367 (2%)

Query: 85   EDIFL-SICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
            ED FL  + R   +  R L A ++FDK  K+ G  PT  SY  ++  L+E +  + A+  
Sbjct: 751  EDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDL 810

Query: 143  YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
            ++ M+ +G  P   + N+L+ A+   SG +   F++++EM +R C PD+ TY  +I+ L 
Sbjct: 811  FKDMKNVGCAPDAFTFNMLL-AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLA 869

Query: 203  RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
            +   + +A + F ++ +    PT  TY  LI+GL +   +EEAMRLFEEM   G +PN  
Sbjct: 870  KSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCA 929

Query: 263  TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
             ++ L++G  K G +  A +L + M+++  RP++ +Y+ L++ LC  G++ EA+   + +
Sbjct: 930  IFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNEL 989

Query: 323  KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW-SLHIRIHNTVVQ 381
            K  GL PD   Y +II+      + +EA    +EM   GI P+  T+ SL +   N  + 
Sbjct: 990  KSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLML---NLGLA 1046

Query: 382  GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
            G+ +    +A ++Y  ++   +  D  TY++LI  +    +   +  +   +++DGC P+
Sbjct: 1047 GMVE----QAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102

Query: 442  EGTWSAV 448
             GT++ +
Sbjct: 1103 IGTYAQL 1109



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 220/475 (46%), Gaps = 10/475 (2%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           K   +++  +VL ++++  D  +AL  F S  +E+     H   T + M+  L   ++  
Sbjct: 82  KTEIRVSEDEVLGVLKSMTDPIRALSYFYS-ISEFPTVL-HTTETCNFMLEFLRVHDKVE 139

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
               + + + K+      D +L+I +             V +KM++ G      SY  ++
Sbjct: 140 DMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLI 199

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            +L++      A   YR M   G++P + + + L+ AL K   + +    + +EM + G 
Sbjct: 200 HLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS-EMVMVLLKEMEDLGL 258

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            P+ YT+   I  L R GKI EA E+F+ M+ + C P +VTYT LI+ LC +  +E A  
Sbjct: 259 RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKE 318

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           LF +M++ G +P+   Y +L+D     G      E    M +  + P++VT++ L++ LC
Sbjct: 319 LFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLC 378

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           K     EA    D M+ QG+ P+   Y  +I      G+ ++A   L  M   G+ P   
Sbjct: 379 KARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAY 438

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           T+++ I             +  +A + +  M+ + I  + +  ++ +    + G + ++ 
Sbjct: 439 TYNIFIDYFGK------SGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            + + L  +G  PD  T++ +M       ++ +A  LL   + N C E +V + N
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGC-EPDVIVVN 546



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 165/333 (49%), Gaps = 10/333 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A   FD M++ G  P   +Y T++  L+   +++ A +    M  +G+QP   + N+ I
Sbjct: 385 EAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFI 444

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
               K SG    A + F +M  +G  P+       +  L  +G++ EAK +F  +     
Sbjct: 445 DYFGK-SGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGL 503

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P  VTY  ++    +   V+EA+ L  EM   G EP+V   +SL+D L K G   +A +
Sbjct: 504 APDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQ 563

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +   M   +  P +VTY+TLL+GL KEG++Q+A+E+ + M  +   P+   +  ++ CFC
Sbjct: 564 MFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFC 623

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
              + + A     +M +    P+ LT+       NTV+ GL K +  N AF  +  ++ +
Sbjct: 624 KNDEVELALKMFSKMTVMDCKPDVLTY-------NTVIYGLIKENKVNHAFWFFHQLK-K 675

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           S+  D +T  +L+    K G I  +  I  + +
Sbjct: 676 SMHPDHVTICTLLPGLVKCGQIGDAISIARDFM 708



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 133/258 (51%), Gaps = 1/258 (0%)

Query: 47   RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
            + D  T++++IS L  +N    A D    +       T   +  +  G  +V R  +AMR
Sbjct: 855  KPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMR 914

Query: 107  VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
            +F++M ++GC+P    +  ++    +    + A + ++ M   GI+P + S  +L+  LC
Sbjct: 915  LFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLC 974

Query: 167  KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
              +G +D A   F E+ + G  PD   Y  +INGL +  ++ EA  L+ EM  +   P +
Sbjct: 975  L-AGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDL 1033

Query: 227  VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
             TY SL+  L  +  VE+A R++EE++  G+EP+VFTY++L+ G         A  + + 
Sbjct: 1034 YTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKN 1093

Query: 287  MISKRHRPNIVTYSTLLN 304
            M+     PNI TY+ L N
Sbjct: 1094 MMVDGCNPNIGTYAQLPN 1111



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 186/424 (43%), Gaps = 10/424 (2%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG   D+ T+++M+       Q   A +LL  + +  C+    +  S+     +  R  +
Sbjct: 501 NGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDE 560

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A ++FD+MK+    PT  +Y T+L+ L +E +++ A   +  M E    P   S N L+ 
Sbjct: 561 AWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLD 620

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CKN   ++ A K+F +M    C PD  TY T+I GL +  K+  A   F +++ K+  
Sbjct: 621 CFCKND-EVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMH 678

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEE-MRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           P  VT  +L+ GL +   + +A+ +  + M       N   +  LM G        +A+ 
Sbjct: 679 PDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAII 738

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLYGKIISCF 341
             + ++             L+  LCK  +   A +I D+  K  G+ P    Y  +I   
Sbjct: 739 FAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGEL 798

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
            ++   ++A +   +M   G  P+  T+++ + +H               F++Y  M +R
Sbjct: 799 LEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGK------SGKITELFELYKEMISR 852

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
               D++TY+ +I+   K  ++ K+     +LV     P   T+  ++  L    ++ +A
Sbjct: 853 RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEA 912

Query: 462 AELL 465
             L 
Sbjct: 913 MRLF 916



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 187/438 (42%), Gaps = 80/438 (18%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++ ++S L    + + A +L + + ++KC      F ++   + +      A+++F KM
Sbjct: 579 TYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---- 167
               C+P   +Y TV+  L++EN++  AF F+  +++  + P   ++  L+  L K    
Sbjct: 639 TVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK-SMHPDHVTICTLLPGLVKCGQI 697

Query: 168 --------------------------NSGT-----MDAAFKIFREMPNRG-CTPDSYTYG 195
                                       GT     MD A     E+   G C  DS+   
Sbjct: 698 GDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLI- 756

Query: 196 TLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            L+  LC+  +   A ++F +   K   SPT+ +Y  LI  L +    E+A  LF++M++
Sbjct: 757 PLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKN 816

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G  P+ FT++ L+    K G  ++  EL + MIS+R +P+ +TY+ +++ L K   L +
Sbjct: 817 VGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDK 876

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           A++    +     +P    YG +I     +G+ +EA    +EM   G             
Sbjct: 877 ALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYG------------- 923

Query: 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
                    CK  PN A                  ++ LI  + K GD   + ++   +V
Sbjct: 924 ---------CK--PNCAI-----------------FNILINGYGKIGDTETACQLFKRMV 955

Query: 435 LDGCLPDEGTWSAVMTAL 452
            +G  PD  +++ ++  L
Sbjct: 956 NEGIRPDLKSYTILVDCL 973


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 203/417 (48%), Gaps = 33/417 (7%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDR-VNKEKCDITEDIFLSICRGYGRVHRPL-- 102
           FRH   ++  MI  L +      A+ L+   V+++  D    +F +I    G     +  
Sbjct: 9   FRHTLHSYCTMIHFLCTHQMLPEAKSLIQVIVSRKGKDSASAVFAAILETKGTQRSDIYV 68

Query: 103 ---------------DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
                          DA+  F   +E        +   VL  L++    KL + FY+ + 
Sbjct: 69  FSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEIL 128

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G    +   N+L+   CK  G +  A  +F  +   G  P   ++ TL+NG  ++G +
Sbjct: 129 ECGYPASLYFFNILMHRFCKE-GEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGIL 187

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            E   L   M      P V TY+ LINGLC+   ++EA  LF+EM  KG+ PN  T+++L
Sbjct: 188 DEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTL 247

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG CK G    AME+ + ++S+   P+++TY+TL+ G CK+G L++  +++D M ++GL
Sbjct: 248 IDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGL 307

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-- 385
           KPD   Y  +I   C  G  + A  +  +M+   I  + +       ++  ++ GLCK  
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDV-------VYTALISGLCKEG 360

Query: 386 --TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
              D  +  +  LS+    +  DS TY+ ++  FCK GD++  ++++ E+  DG +P
Sbjct: 361 RSVDAEKMLREMLSV---GLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVP 414



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 154/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G +P+  S+ T++   ++   L   FR    M   G QP V + +VLI 
Sbjct: 155 AQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM  +G  P+  T+ TLI+G C+ GK+  A E++K++ ++  S
Sbjct: 215 GLCKES-KMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI G C+   +++   L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLCKEG+  +A ++L  M   GLKPD+G Y  +++ FC 
Sbjct: 334 RKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 NGDVNTGSKLLKEMQRDGHVPSVVT 418



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 151/312 (48%), Gaps = 23/312 (7%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCT--PDSYTYGTLINGLCRLGKIYEAKELFK-EM 217
           LI+ +    G  D+A  +F  +     T   D Y +  LI      G + +A E F+   
Sbjct: 35  LIQVIVSRKGK-DSASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDALECFRLSR 93

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           E K   P   T   +++ L + K  +     ++E+   G   +++ ++ LM   CK G  
Sbjct: 94  EHKFWVP-FDTCRKVLDHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEI 152

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A  +   +     +P++V+++TL+NG  K G L E   + + M   G +PD   Y  +
Sbjct: 153 RLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVL 212

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYL 396
           I+  C   K  EA    DEM+  G+ PN +T++       T++ G CK    + A ++Y 
Sbjct: 213 INGLCKESKMDEAHELFDEMLEKGLVPNGVTFT-------TLIDGHCKNGKLDLAMEIYK 265

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM------- 449
            + ++ +S D +TY++LI  FCKKGD+ ++  ++DE+ + G  PD+ T++ ++       
Sbjct: 266 QILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEG 325

Query: 450 ---TALWDRRKM 458
              TA   R+KM
Sbjct: 326 DLETAFEYRKKM 337


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 207/402 (51%), Gaps = 31/402 (7%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116
            +K++ +  FRP++ LL  +    C + +D             + L+A  ++ ++ E G 
Sbjct: 417 FTKMMLSRNFRPSDLLLTML---VCGLCKD------------GKHLEATELWFRLLEKG- 460

Query: 117 EPTPKSYITVLAI---LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
             +P S +T  A+   L    +L  A R  + M E G+     + N LI   C N G ++
Sbjct: 461 --SPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFC-NEGKVE 517

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
             F++  EM  RG  PD YTY  L+ GLC +GK+ +A +L+ E +       + TY  ++
Sbjct: 518 GCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMM 577

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
            G C++  +E+   LF E+ SK +E N   Y+ ++   C+ G  + A++LL+ M SK   
Sbjct: 578 EGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGIL 637

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN  TYS+L++G+C  G +++A  ++D M+ +G  P+   Y  +I  +C +G+   A + 
Sbjct: 638 PNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAEST 697

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSS 412
             EM+   I PN+ T+++       ++ G CK  +  +A  + + M+   I  D +TY+ 
Sbjct: 698 WLEMISFNIHPNKFTYTV-------MIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNV 750

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           L   FCK  D+  + ++ D++  +G   DE T++ ++   W+
Sbjct: 751 LTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG-WN 791



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 192/412 (46%), Gaps = 10/412 (2%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           + +SLM      ++Q   AE+ L+ +      I  D   S+     +  R   A R    
Sbjct: 362 TLYSLM-QGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKM 420

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M      P+      ++  L ++ +   A   +  + E G      + N LI  LC  +G
Sbjct: 421 MLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLC-GAG 479

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +  A +I +EM  RG   D  TY  LI G C  GK+     L +EM  +   P + TY 
Sbjct: 480 KLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYN 539

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            L+ GLC    +++A++L++E ++ G+  N+ TY  +M+G CK         L   ++SK
Sbjct: 540 FLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSK 599

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
           +   N + Y+ ++   C+ G +  A+++L+ MK +G+ P+   Y  +I   C+IG  ++A
Sbjct: 600 KMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDA 659

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
            + +DEM   G  PN + ++        ++ G CK    + A   +L M + +I  +  T
Sbjct: 660 KHLIDEMRKEGFVPNVVCYT-------ALIGGYCKLGQMDTAESTWLEMISFNIHPNKFT 712

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           Y+ +I  +CK G++ K+  ++ ++   G +PD  T++ +         M  A
Sbjct: 713 YTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNA 764



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 187/413 (45%), Gaps = 46/413 (11%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            VF  M E  C P   S+  V+  L +  +++ A   +  M ++GI P V + N +I  L
Sbjct: 207 EVFRVMSEGAC-PDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGL 265

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C+N G +D AF++  +M  +G  P+  TYG LINGL +L    +   +  EM     +P 
Sbjct: 266 CQN-GRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPN 324

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG----------- 274
           VV + +LI+G C+  ++E A+++ + M SK + P   T  SLM G CK            
Sbjct: 325 VVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALE 384

Query: 275 ------------GCSS------------QAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                        C S             A    +MM+S+  RP+ +  + L+ GLCK+G
Sbjct: 385 EILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDG 444

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           K  EA E+  R+  +G          +I   C  GK  EA+  + EM+  G+  +R+T+ 
Sbjct: 445 KHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITY- 503

Query: 371 LHIRIHNTVVQGLCKTDPNRA-FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N ++ G C        F++   M  R I  D  TY+ L+   C  G +  + ++
Sbjct: 504 ------NALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKL 557

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            DE    G + +  T+  +M       ++ +  E L  EL++K +E    + N
Sbjct: 558 WDEFKASGLISNIHTYGIMMEGYCKANRI-EDVENLFNELLSKKMELNSIVYN 609



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 207/428 (48%), Gaps = 10/428 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T+  +I+ L+  N F     +LD +     +    +F ++  GY ++     A
Sbjct: 285 GVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGA 344

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++ D M      PT  +  +++    + +Q++ A      +   G+     +   ++  
Sbjct: 345 LKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHW 404

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK      +AF+  + M +R   P       L+ GLC+ GK  EA EL+  +  K    
Sbjct: 405 LCKKF-RYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPA 463

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           + VT  +LI+GLC +  + EA R+ +EM  +G+  +  TY++L+ G C  G       L 
Sbjct: 464 SKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLR 523

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +  +P+I TY+ LL GLC  GKL +A+++ D  K  GL  +   YG ++  +C  
Sbjct: 524 EEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKA 583

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
            + ++  N  +E++   +  N + +++ I+ H       C+  +   A Q+  +M+++ I
Sbjct: 584 NRIEDVENLFNELLSKKMELNSIVYNIIIKAH-------CQNGNVAAALQLLENMKSKGI 636

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TYSSLI   C  G +  +  ++DE+  +G +P+   ++A++       +M   AE
Sbjct: 637 LPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQM-DTAE 695

Query: 464 LLLLELMN 471
              LE+++
Sbjct: 696 STWLEMIS 703



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 173/347 (49%), Gaps = 32/347 (9%)

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
           FY   R+ G  P + + N  + +L K +   +   ++FR M    C PD +++  +IN L
Sbjct: 174 FYLLARK-GTFPSLKTCNFXLSSLVK-ANEFEKCCEVFRVMSEGAC-PDVFSFTNVINAL 230

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+ GK+  A ELF +ME    SP VVTY  +INGLCQ+  ++ A  L E+M  KGV+PN+
Sbjct: 231 CKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNL 290

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY +L++GL K     +   +L  MI     PN+V ++ L++G CK G ++ A++I D 
Sbjct: 291 KTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDV 350

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG--ITPNRLTWSLH-----IR 374
           M  + + P +     ++  FC   + + A N L+E++  G  I P+     +H      R
Sbjct: 351 MISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFR 410

Query: 375 IHNT---------------------VVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSS 412
            H+                      +V GLCK   +  A +++  +  +      +T ++
Sbjct: 411 YHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNA 470

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           LI   C  G + +++RIV E++  G   D  T++A++    +  K+ 
Sbjct: 471 LIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVE 517



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/451 (24%), Positives = 200/451 (44%), Gaps = 40/451 (8%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPLDAMR 106
           D  +F+ +I+ L    +   A +L  ++  EK  I+ ++    C   G  +  R  +A  
Sbjct: 219 DVFSFTNVINALCKGGKMENAIELFMKM--EKLGISPNVVTYNCIINGLCQNGRLDNAFE 276

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           + +KM   G +P  K+Y  ++  L++ N           M   G  P V   N LI   C
Sbjct: 277 LKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYC 336

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G ++ A KI   M ++  TP S T  +L+ G C+  +I  A+   +E+ +   S   
Sbjct: 337 K-MGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHP 395

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
               S+++ LC+      A R  + M S+   P+    + L+ GLCK G   +A EL   
Sbjct: 396 DNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFR 455

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           ++ K    + VT + L++GLC  GKL EA  I+  M  +GL  D   Y  +I  FC+ GK
Sbjct: 456 LLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 515

Query: 347 YQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRIHNT 378
            +      +EM   GI P+  T++                             +I  +  
Sbjct: 516 VEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGI 575

Query: 379 VVQGLCKT----DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +++G CK     D    F   LS   + + ++S+ Y+ +I   C+ G++  + ++++ + 
Sbjct: 576 MMEGYCKANRIEDVENLFNELLS---KKMELNSIVYNIIIKAHCQNGNVAAALQLLENMK 632

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G LP+  T+S+++  + +   +  A  L+
Sbjct: 633 SKGILPNCATYSSLIHGVCNIGLVEDAKHLI 663



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 138/291 (47%), Gaps = 9/291 (3%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A  +F  +  +G  P   T    ++ L +  +  +  E+F+ M   AC P V ++T++IN
Sbjct: 170 AVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVIN 228

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
            LC+   +E A+ LF +M   G+ PNV TY+ +++GLC+ G    A EL + M  K  +P
Sbjct: 229 ALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQP 288

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N+ TY  L+NGL K     +   ILD M   G  P+  ++  +I  +C +G  + A    
Sbjct: 289 NLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIK 348

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
           D M+   ITP  +T         +++QG CK+D    A      + +  +S+      S+
Sbjct: 349 DVMISKNITPTSVTLY-------SLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSV 401

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +   CKK   H + R    ++     P +   + ++  L    K  +A EL
Sbjct: 402 VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATEL 452



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 1/261 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ ++  L +  +   A  L D             +  +  GY + +R  D 
Sbjct: 530 GIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDV 589

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F+++     E     Y  ++    +   +  A +   +M+  GI P  A+ + LI  
Sbjct: 590 ENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHG 649

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           +C N G ++ A  +  EM   G  P+   Y  LI G C+LG++  A+  + EM +    P
Sbjct: 650 VC-NIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHP 708

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TYT +I+G C+  ++E+A  L  +M+  G+ P+V TY+ L +G CK      A ++ 
Sbjct: 709 NKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVC 768

Query: 285 QMMISKRHRPNIVTYSTLLNG 305
             M ++    + +TY+TL++G
Sbjct: 769 DQMATEGLPVDEITYTTLVHG 789



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 114/228 (50%), Gaps = 1/228 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G   +  T+ +M+     AN+    E+L + +  +K ++   ++  I + + +     
Sbjct: 563 ASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVA 622

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+++ + MK  G  P   +Y +++  +     ++ A      MR+ G  P V     LI
Sbjct: 623 AALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALI 682

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G MD A   + EM +    P+ +TY  +I+G C+LG + +A  L  +M+    
Sbjct: 683 GGYCK-LGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGI 741

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            P VVTY  L NG C++  ++ A ++ ++M ++G+  +  TY++L+ G
Sbjct: 742 VPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 789


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 208/416 (50%), Gaps = 16/416 (3%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV-HRPL-DAMRVFDK 110
           F+L+I  L+   +++ A  LL+ V         D+F   C  +    H+ L +A+ ++DK
Sbjct: 364 FNLVIKGLLRDKRWKDAIGLLELVVDTG---VPDVFTYGCLIHWLCKHQKLHEAVNLWDK 420

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           MKE G +P+  +Y ++L    E+ ++  A + Y  M + G  P   +   L+K   K   
Sbjct: 421 MKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKA 480

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             D A+ +  EM   G +   YTY  LINGL  + ++ E  E+ K   ++   PT +TY 
Sbjct: 481 -FDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYN 539

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           S+ING  ++  +  A  ++ +MR KG+ PN+ TY+S +DG C+  C   A++LL  +   
Sbjct: 540 SIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRD 599

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
             +P+I  Y+  ++  CK+G +  A+  L  +   GL PD  +Y   ++ + ++    EA
Sbjct: 600 GIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEA 659

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF--QVYLSMRNRSISVDSL 408
           + F   M+   +  +         I+ T++ G  K   N AF  ++Y  M    +  D  
Sbjct: 660 SKFYYSMIKQRVVAD-------TEIYTTLIDGFSKVG-NVAFALELYSEMMANHVIPDDK 711

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           T+++L    C+ GDI  + R++D++      P+  T++ ++ A     K+++A +L
Sbjct: 712 TFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQL 767



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/492 (25%), Positives = 213/492 (43%), Gaps = 50/492 (10%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           AL +FD    +   G   D   + ++I   V       A  L D +        E ++  
Sbjct: 169 ALTLFDEMRGK---GCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAI 225

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---- 146
              G  ++     A++V  KM+E G EP   +Y +V+ +LV+  ++  A R    M    
Sbjct: 226 TISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVGRMDEALRLKDQMLLAT 285

Query: 147 -----------------------------REI---GIQPCVASLNVLIKALCKNSGTMDA 174
                                         E+   G+ P   +  VLIK  C   G  D 
Sbjct: 286 GKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKG-CDAEGMSDE 344

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
            +K+ R+M  +G    +Y +  +I GL R  +  +A  L  E+      P V TY  LI+
Sbjct: 345 TYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLL-ELVVDTGVPDVFTYGCLIH 403

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
            LC+ + + EA+ L+++M+  GV+P++ TY SL+ G C+ G   +A++L   M  K   P
Sbjct: 404 WLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPP 463

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N VTY+TL+ G  K+     A  +L+ M+  G+      Y  +I+    + +  E    L
Sbjct: 464 NEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEML 523

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
              +  G  P  +T+       N+++ G  K      AF +Y  MR + I+ + +TY+S 
Sbjct: 524 KRFLSEGFVPTTMTY-------NSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSF 576

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           I  +C+      + +++  +  DG  PD   ++A +     +  M +A   L+L L+   
Sbjct: 577 IDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVL-LLKDG 635

Query: 474 VEAEVDIQNQDV 485
           +  +V + N  V
Sbjct: 636 LTPDVTVYNSFV 647



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 154/337 (45%), Gaps = 7/337 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLD--RVNKEKC-DITEDIFLSICRGYGRVHRP 101
           GF  +  T++ ++   +    F  A  LL+  R N   C D T +I ++   G   V+R 
Sbjct: 460 GFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILIN---GLYMVNRV 516

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +   +  +    G  PT  +Y +++   V+   +  AF  YR MR+ GI P + +    
Sbjct: 517 CEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSF 576

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   C+ +   D A K+   +   G  PD   Y   I+  C+ G +  A      +    
Sbjct: 577 IDGYCR-TNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDG 635

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            +P V  Y S + G    K + EA + +  M  + V  +   Y++L+DG  K G  + A+
Sbjct: 636 LTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFAL 695

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           EL   M++    P+  T++ L +GLC+ G +  A  +LD M+   + P+   Y  +I+  
Sbjct: 696 ELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINAC 755

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              GK QEA    DEM+  G+ P+  T+ +  R +N+
Sbjct: 756 VRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRTNNS 792



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 138/291 (47%), Gaps = 1/291 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG    + T++++I+ L   N+    +++L R   E    T   + SI  G+ +      
Sbjct: 494 NGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGS 553

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  ++ +M++ G  P   +Y + +      N   LA +   ++R  GIQP +A+ N  I 
Sbjct: 554 AFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFID 613

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G M  A      +   G TPD   Y + + G   L  + EA + +  M  +   
Sbjct: 614 TFCKQ-GNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVV 672

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
                YT+LI+G  +  +V  A+ L+ EM +  V P+  T+++L  GLC+ G    A  L
Sbjct: 673 ADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRL 732

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           L  M      PNIVTY+ L+N   ++GKLQEA ++ D M   G+ PD   Y
Sbjct: 733 LDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTY 783



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 154/346 (44%), Gaps = 29/346 (8%)

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + G    V  L+ ++  L + +    AA   +  M  RG  PD+ +   L+    R    
Sbjct: 107 DAGSPAAVTLLSHVLTCLSRAASDCAAAAAAYSRMVTRGVVPDAKSRTDLLVTTARGASA 166

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            +A  LF EM  K C      Y  +I    +     +A+RLF+EM   GV+P+   Y+  
Sbjct: 167 ADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAIT 226

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-G 326
           + GLCK   + +A+++L  M      P  +TYS++++ L K G++ EA+ + D+M L  G
Sbjct: 227 ISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVGRMDEALRLKDQMLLATG 286

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI----------- 375
            K D  L   ++  +C  G+  +A +  DE+V  G+TP  +T+ + I+            
Sbjct: 287 KKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETY 346

Query: 376 -----------------HNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
                             N V++GL +    +     L +   +   D  TY  LI   C
Sbjct: 347 KLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWLC 406

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           K   +H++  + D++   G  P   T+ +++    ++ +M +A +L
Sbjct: 407 KHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKL 452



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 123/262 (46%), Gaps = 5/262 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHR 100
           + GF     T++ +I+  V A     A  +  ++ K+   IT +I  + S   GY R + 
Sbjct: 528 SEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKG--ITPNIVTYTSFIDGYCRTNC 585

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A+++   ++  G +P   +Y   +    ++  +  A  F   + + G+ P V   N 
Sbjct: 586 CDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNS 645

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
            +    KN   M  A K +  M  +    D+  Y TLI+G  ++G +  A EL+ EM   
Sbjct: 646 FVTGY-KNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMAN 704

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P   T+T+L +GLC+S  ++ A RL ++MR   V PN+ TY+ L++   + G   +A
Sbjct: 705 HVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEA 764

Query: 281 MELLQMMISKRHRPNIVTYSTL 302
            +L   M+S    P+  TY  L
Sbjct: 765 FQLHDEMLSSGVVPDDTTYDIL 786


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 202/412 (49%), Gaps = 9/412 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  T + +I  L    Q + A    D++  +   + +  + ++  G  ++     A
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAA 183

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  K+     +P    Y T++  L +   +  A+  +  M   GI   V + + LI  
Sbjct: 184 IKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 243

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  A  +  EM  +   P+ YTY  L++ LC+ GK+ EAK +   M      P
Sbjct: 244 FCI-EGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKP 302

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V+TY++L++G      V++A  +F  M   GV P+V TY+ L++G CK     +A+ L 
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P IVTYS+L++GLCK G++    +++D M  +G   +   Y  +I   C  
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKN 422

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSI 403
           G    A    ++M   GI PN  T+++       ++ GLCK    + A +V+  +  +  
Sbjct: 423 GHLDRAIALFNKMKDQGIRPNTFTFTI-------LLDGLCKGGRLKDAQEVFQDLLTKGY 475

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            ++  TY+ +I   CK+G + ++  ++ ++  +GC+PD  T+  ++ AL+ +
Sbjct: 476 HLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKK 527



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 185/363 (50%), Gaps = 9/363 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              V  K+ + G  P   +  T++  L  + Q+K A  F+  +   G Q    S   LI 
Sbjct: 113 GFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLIN 172

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +CK  G   AA K+ +++  R   P+   Y T+I+ LC+   + EA  LF EM  K  S
Sbjct: 173 GVCK-IGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGIS 231

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VVTY++LI G C    ++EA+ L  EM  K + PNV+TY+ L+D LCK G   +A  +
Sbjct: 232 ADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSV 291

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+    +P+++TYSTL++G     ++++A  + + M L G+ PD   Y  +I+ FC 
Sbjct: 292 LAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCK 351

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
                EA N   EM    + P  +T+S       +++ GLCK+      + +   M +R 
Sbjct: 352 NKMVDEALNLFKEMHQKNMVPGIVTYS-------SLIDGLCKSGRIPYVWDLIDEMHDRG 404

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              + +TYSSLI   CK G + ++  + +++   G  P+  T++ ++  L    +++ A 
Sbjct: 405 QPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQ 464

Query: 463 ELL 465
           E+ 
Sbjct: 465 EVF 467



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 193/379 (50%), Gaps = 9/379 (2%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F  I   + ++     A+ +  +++  G +P   +   ++       Q+   F     + 
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           + G  P   +LN LIK LC   G +  A     ++  +G   +  +YGTLING+C++G  
Sbjct: 122 KRGYPPDTVTLNTLIKGLCL-KGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDT 180

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             A +L ++++ +   P VV Y+++I+ LC+ + V EA  LF EM  KG+  +V TYS+L
Sbjct: 181 RAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 240

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           + G C  G   +A+ LL  M+ K   PN+ TY+ L++ LCKEGK++EA  +L  M    +
Sbjct: 241 IYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACV 300

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KPD   Y  ++  +  + + ++A +  + M L G+TP+  T+++       ++ G CK  
Sbjct: 301 KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTI-------LINGFCKNK 353

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446
             + A  ++  M  +++    +TYSSLI   CK G I     ++DE+   G   +  T+S
Sbjct: 354 MVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYS 413

Query: 447 AVMTALWDRRKMRQAAELL 465
           +++  L     + +A  L 
Sbjct: 414 SLIDGLCKNGHLDRAIALF 432



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 179/396 (45%), Gaps = 44/396 (11%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V KAL   D   A+   GF+ +  ++  +I+ +      R A  LL +++         +
Sbjct: 145 VKKALHFHDKLLAQ---GFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVM 201

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + +I     +     +A  +F +M   G      +Y T++     E +LK A      M 
Sbjct: 202 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMV 261

Query: 148 EIGIQPCVASLNVLIKALCKN-------------------------SGTMDAAF------ 176
              I P V + N+L+ ALCK                          S  MD  F      
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 177 ---KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
               +F  M   G TPD +TY  LING C+   + EA  LFKEM  K   P +VTY+SLI
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +GLC+S  +     L +EM  +G   NV TYSSL+DGLCK G   +A+ L   M  +  R
Sbjct: 382 DGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIR 441

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN  T++ LL+GLCK G+L++A E+   +  +G   +   Y  +I   C  G  +EA   
Sbjct: 442 PNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTM 501

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
           L +M   G  P+ +T+ +       ++  L K D N
Sbjct: 502 LSKMEDNGCIPDAVTFEI-------IIIALFKKDEN 530



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 140/258 (54%), Gaps = 10/258 (3%)

Query: 185  RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
            +G  PD +T   LIN  C +G+I     +  ++  +   P  +T+T+LINGLC    V +
Sbjct: 955  KGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNK 1014

Query: 245  AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
            A+   +++ ++G + N  +Y +L++G+CK G +  A++LL+ +  +  +P++V Y+T+++
Sbjct: 1015 ALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIID 1074

Query: 305  GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
             LCK   + +A  +   M ++G+  D   Y  +I  FC +GK +EA   L++MVL  I P
Sbjct: 1075 ALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINP 1134

Query: 365  NRLTWSLHIRIHNTVVQGLCKTDP---NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            N       +R +N +V  LCK      + +  +   M +     +++T+  +I+   +K 
Sbjct: 1135 N-------VRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKD 1187

Query: 422  DIHKSARIVDELVLDGCL 439
            +  K  +++ E++  G L
Sbjct: 1188 ENDKVEKLLHEMIARGLL 1205



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 3/226 (1%)

Query: 150  GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            GIQP + +LN+LI   C + G +   F I  ++  RG  PD+ T+ TLINGLC  G++ +
Sbjct: 956  GIQPDLFTLNILINCFC-HMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNK 1014

Query: 210  AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            A     ++  +      V+Y +LING+C+      A++L  ++  +  +P+V  Y++++D
Sbjct: 1015 ALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIID 1074

Query: 270  GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
             LCK    S+A  L   M  K    ++VTY+TL+ G C  GKL+EA+ +L++M L+ + P
Sbjct: 1075 ALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINP 1134

Query: 330  DAGLYGKIISCFCDIGK--YQEAANFLDEMVLGGITPNRLTWSLHI 373
            +   Y  ++   C  GK    E+ + L +M   G   N +T+ + I
Sbjct: 1135 NVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIII 1180



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 144/271 (53%), Gaps = 9/271 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A   F  M     +P ++ +  +++   + K    A+ L   +  KG++P++ T + L+
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           +  C  G  +    +L  ++ + + P+ VT +TL+ GLC +G++++A+   D++  QG +
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQ 161

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD- 387
            +   YG +I+  C IG  + A   L ++      PN + +S       T++  LCK   
Sbjct: 162 LNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYS-------TIIDALCKYQL 214

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
            + A+ ++  M  + IS D +TYS+LI  FC +G + ++  +++E+VL    P+  T++ 
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           ++ AL    K+++A  +L + ++  CV+ +V
Sbjct: 275 LVDALCKEGKVKEAKSVLAV-MLKACVKPDV 304



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 141/296 (47%), Gaps = 10/296 (3%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A   F  M     TP    +  +++   ++     A  L   +E K   P ++T   
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LIN  C    +     +  ++  +G  P+  T ++L+ GLC  G   +A+     ++++ 
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            + N V+Y TL+NG+CK G  + A+++L ++  +  KP+  +Y  II   C      EA 
Sbjct: 160 FQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAY 219

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTY 410
               EM + GI+ + +T+S       T++ G C +     A  +   M  ++I+ +  TY
Sbjct: 220 GLFSEMTVKGISADVVTYS-------TLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTY 272

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCL-PDEGTWSAVMTALWDRRKMRQAAELL 465
           + L+   CK+G + K A+ V  ++L  C+ PD  T+S +M   +   ++++A  + 
Sbjct: 273 NILVDALCKEGKV-KEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 3/223 (1%)

Query: 107  VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
            +  K+ + G  P   ++ T++  L  + Q+  A  F+  +   G Q    S   LI  +C
Sbjct: 983  ILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVC 1042

Query: 167  KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
            K  G   AA K+ R++  R   PD   Y T+I+ LC+   + +A  LF EM  K  S  V
Sbjct: 1043 K-IGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADV 1101

Query: 227  VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS--SQAMELL 284
            VTY +LI G C    ++EA+ L  +M  K + PNV TY+ L+D LCK G     +++ +L
Sbjct: 1102 VTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSML 1161

Query: 285  QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
              M     + N VT+  +++ L ++ +  +  ++L  M  +GL
Sbjct: 1162 SKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 120/214 (56%), Gaps = 8/214 (3%)

Query: 240  KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
            K    A+ L   +  KG++P++FT + L++  C  G  +    +L  ++ + + P+ +T+
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 300  STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
            +TL+NGLC +G++ +A+   D++  QG + +   YG +I+  C IG  + A   L ++  
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKI-- 1057

Query: 360  GGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
                  RLT    + ++NT++  LCK    ++A+ ++  M  + IS D +TY++LI  FC
Sbjct: 1058 ----DGRLTKP-DVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFC 1112

Query: 419  KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
              G + ++  +++++VL    P+  T++ ++ AL
Sbjct: 1113 IVGKLKEAIGLLNKMVLKTINPNVRTYNILVDAL 1146



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 14/196 (7%)

Query: 28   VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL----DRVNKEKCDI 83
            VNKAL   D   A+   GF+ +  ++  +I+ +      R A  LL     R+ K    +
Sbjct: 1012 VNKALHFHDKLLAQ---GFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVM 1068

Query: 84   TEDIFLSICRGYGRVHRPLD-AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
               I  ++C+     H+ +  A  +F +M   G      +Y T++       +LK A   
Sbjct: 1069 YNTIIDALCK-----HQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGL 1123

Query: 143  YRHMREIGIQPCVASLNVLIKALCKNS-GTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
               M    I P V + N+L+ ALCK     +D +  +  +M + GC  ++ T+  +I+ L
Sbjct: 1124 LNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISAL 1183

Query: 202  CRLGKIYEAKELFKEM 217
                +  + ++L  EM
Sbjct: 1184 FEKDENDKVEKLLHEM 1199


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 194/388 (50%), Gaps = 11/388 (2%)

Query: 42  YANGFRHDNSTFS--LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99
           +A+ FR   S  S  ++I  L+  N F     +L  + +    I+ D F  + + Y ++ 
Sbjct: 81  WASKFRRLRSWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMD 140

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
               A+  F+ MK+F C+P   +Y TVL ++V +  + LA   Y  M ++   P +A+ +
Sbjct: 141 MIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFS 200

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           +LI  +CK SG    A ++F EM  R   P+  TY  +I+GLC+  K   A  LF  M+ 
Sbjct: 201 ILIDGMCK-SGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKD 259

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
             C P  VTY +L++G C+   V+EA+ L +         +   YS L+DGL +      
Sbjct: 260 HGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFED 319

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A    + M     +P+++ Y+ ++ GL K GK ++A+ +L+ M  +GL PD   Y  +I 
Sbjct: 320 AQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIK 379

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSM 398
            +CD+G   EA +   E+       +  T+++       ++ G+C++     A Q++  M
Sbjct: 380 GYCDLGLLDEAKSLHLEISKNDCFSSACTYTI-------LICGMCRSGLVGDAQQIFNEM 432

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKS 426
                    +T+++LI  FCK G+I K+
Sbjct: 433 EKHGCYPSVVTFNALIDGFCKAGNIEKA 460



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 177/397 (44%), Gaps = 64/397 (16%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           AL +FD  T         +  T++++IS L  A +   A  L   +    C      + +
Sbjct: 215 ALQMFDEMTQR---RILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNA 271

Query: 91  ICRGY---GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  G+   GRV   L  ++ F+K +        + Y  ++  L    + + A  +YR M 
Sbjct: 272 LLHGFCKLGRVDEALGLLKYFEKDRYV---LDKQGYSCLIDGLFRARRFEDAQVWYRKMT 328

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E  I+P V    +++K L K +G    A ++  EM  RG  PD++ Y  LI G C LG +
Sbjct: 329 EHNIKPDVILYTIMMKGLSK-AGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLL 387

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            EAK L  E+    C  +  TYT LI G+C+S  V +A ++F EM   G  P+V T+++L
Sbjct: 388 DEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNAL 447

Query: 268 MDGLCKGG--------------------------------------------CSS----Q 279
           +DG CK G                                            C S    +
Sbjct: 448 IDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILK 507

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  +L  +      PNI+TY+ L++G CK G +  A ++   ++L+GL PD+  YG +I+
Sbjct: 508 AYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLIN 567

Query: 340 CFCDIGKYQEAANFLDEMVLGGITP------NRLTWS 370
                 + ++A   LD+++  G TP      + +TWS
Sbjct: 568 GLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWS 604



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 162/340 (47%), Gaps = 9/340 (2%)

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
           L FRF+    +        S N++I  L K++G  +  +++ +E+   G +  +  +  L
Sbjct: 74  LGFRFFIWASKFRRLRSWVSHNMIIDMLIKDNG-FELYWQVLKEIKRCGFSISADAFTVL 132

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I    ++  I +A E F+ M+   C P V TY ++++ + + + V  A+ ++  M     
Sbjct: 133 IQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNC 192

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            PN+ T+S L+DG+CK G +  A+++   M  +R  PN +TY+ +++GLC+  K   A  
Sbjct: 193 LPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYR 252

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           +   MK  G  PD+  Y  ++  FC +G+  EA   L           +  + L  + ++
Sbjct: 253 LFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYF-------EKDRYVLDKQGYS 305

Query: 378 TVVQGLCKTDPNRAFQV-YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
            ++ GL +       QV Y  M   +I  D + Y+ ++    K G    + R+++E+   
Sbjct: 306 CLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTER 365

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476
           G +PD   ++A++    D   + +A  L L    N C  +
Sbjct: 366 GLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSS 405



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/442 (21%), Positives = 177/442 (40%), Gaps = 82/442 (18%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D   +S +I  L  A +F  A+    ++ +        ++  + +G  +  +  DA+R+ 
Sbjct: 300 DKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLL 359

Query: 109 DKMKEFGCEPTPKSYITV------LAILVEENQLKLAFRFYRHMREIGIQPCVAS---LN 159
           ++M E G  P    Y  +      L +L E   L L         EI    C +S     
Sbjct: 360 NEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHL---------EISKNDCFSSACTYT 410

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           +LI  +C+ SG +  A +IF EM   GC P   T+  LI+G C+ G I +A+ LF +ME 
Sbjct: 411 ILICGMCR-SGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEI 469

Query: 220 ------------------------------------------------KACSPTVVTYTS 231
                                                              +P ++TY  
Sbjct: 470 GRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNI 529

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI+G C++ ++  A +LF+E++ KG+ P+  TY +L++GL        A  +L  ++   
Sbjct: 530 LIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNG 589

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF---CDIGKYQ 348
             P    Y + +   C+  K+  A  +     L+ L+   G   +++       + G+ +
Sbjct: 590 CTPITEVYKSFMTWSCRRNKITLAFSLW----LKYLRSIPGRDSEVLKSVEENFEKGEVE 645

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
           EA   L EM        +L     +  +   + GLC+      A +++ ++   ++ V  
Sbjct: 646 EAVRGLLEMDF------KLN-DFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVTP 698

Query: 408 LTYSSLITCFCKKGDIHKSARI 429
            +   LI    K G++  +A I
Sbjct: 699 PSCVKLIYRLLKVGNLDLAAEI 720



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 135/367 (36%), Gaps = 86/367 (23%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++++I  +  +     A+ + + + K  C  +   F ++  G+ +      A  +F KM
Sbjct: 408 TYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM 467

Query: 112 KEFGCEPT--------------PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
            E G  P+                S  T++  L +   +  A+     + + G  P + +
Sbjct: 468 -EIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIIT 526

Query: 158 LNVLIKALCKNSGTMDAAFKIFREM---------------------PNR----------- 185
            N+LI   CK +G ++ AFK+F+E+                      NR           
Sbjct: 527 YNILIHGFCK-AGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQI 585

Query: 186 ---GCTPDSYTYGTLINGLCRLGKIYEAKELFK--------------------------- 215
              GCTP +  Y + +   CR  KI  A  L+                            
Sbjct: 586 LKNGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENFEKGEVE 645

Query: 216 -------EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
                  EM+ K     +  YT  + GLCQ+  +EEA+++F  +    V     +   L+
Sbjct: 646 EAVRGLLEMDFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLI 705

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK-EGKLQEAVEILDRMKLQGL 327
             L K G    A E+    I K +       + LL  L + E K   A ++L RMK  G 
Sbjct: 706 YRLLKVGNLDLAAEIFLYTIDKGYMLMPRICNRLLKSLLRSEDKRNRAFDLLSRMKSLGY 765

Query: 328 KPDAGLY 334
             D+ L+
Sbjct: 766 DLDSHLH 772



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 82/188 (43%), Gaps = 18/188 (9%)

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
           V+++ +++ L K+   +   ++L  +K  G    A  +  +I  +  +   ++A    + 
Sbjct: 92  VSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEM 151

Query: 357 MVLGGITPNRLTWS--LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL----TY 410
           M      P+  T++  LH+ +   VV             + L + NR + ++ L    T+
Sbjct: 152 MKDFDCKPDVFTYNTVLHVMVRKEVVL------------LALGIYNRMLKLNCLPNIATF 199

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           S LI   CK G    + ++ DE+     LP++ T++ +++ L   +K   A  L +    
Sbjct: 200 SILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKD 259

Query: 471 NKCVEAEV 478
           + C+   V
Sbjct: 260 HGCIPDSV 267


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 210/435 (48%), Gaps = 57/435 (13%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I +  ++Q++ + K  + A  +F+ A  E       D   FS ++   + +   R A   
Sbjct: 30  IEAKSLIQVVVSRKGKDSASDVFE-AILETKGTQISDFYVFSGLMIAYLESGFVRDAVQC 88

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE------PTPKSYITV 126
                + K  +  D     CR   +V   L   R F  + +F  E      P    +  +
Sbjct: 89  FRLTKQHKIRVPFDT----CR---KVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNI 141

Query: 127 LAI-LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           L     +E +++LA   +  + + G++P V S N LI    K  G +D  F++   M   
Sbjct: 142 LMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIK-LGDLDEGFRLKSAMHAS 200

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  PD YTY  LINGLC+ GK+ EA ELF EM      P  VT+T+LI+G C+++ V+ A
Sbjct: 201 GAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLA 260

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
           M ++++M S+G+ P++ TY++L+ GLCK G   Q  +L+  MI    +P+ ++Y+TL++G
Sbjct: 261 MEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDG 320

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
            CKEG L+ A+E+ ++M  + ++ D   Y  +ISC C  G+  +A   L EM+  G+ P 
Sbjct: 321 SCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKP- 379

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
                                                   D+ TY+ +I  FCKK D   
Sbjct: 380 ----------------------------------------DNGTYTMIINEFCKKRDSKT 399

Query: 426 SARIVDELVLDGCLP 440
           +++++ E+  DG +P
Sbjct: 400 ASKLLREMQRDGPVP 414



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 163/292 (55%), Gaps = 8/292 (2%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
            +  ++E+   G     Y +  L+   C+ G++  A+ +F  +      P+VV++ +LIN
Sbjct: 120 VWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLIN 179

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G  +   ++E  RL   M + G +P+V+TYS L++GLCK G   +A EL   M+     P
Sbjct: 180 GYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVP 239

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N VT++TL++G CK  K+  A+EI  +M  QGL PD   Y  +I   C  G+ ++  + +
Sbjct: 240 NGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLI 299

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413
           DEM++ G+ P++++++       T++ G CK  D   A ++   M   SI +D + Y++L
Sbjct: 300 DEMIMNGLKPDKISYT-------TLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTAL 352

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I+C C++G    + +++ E++  G  PD GT++ ++     +R  + A++LL
Sbjct: 353 ISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLL 404



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 151/265 (56%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M   G QP V + ++LI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G +D A ++F EM + G  P+  T+ TLI+G C+  K+  A E++K+M ++  S
Sbjct: 215 GLCKE-GKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++   L +EM   G++P+  +Y++L+DG CK G    A+EL
Sbjct: 274 PDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALEL 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              MI +  R + V Y+ L++ LC+EG+  +A ++L  M   GLKPD G Y  II+ FC 
Sbjct: 334 RNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
               + A+  L EM   G  P  +T
Sbjct: 394 KRDSKTASKLLREMQRDGPVPGVVT 418



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 155/325 (47%), Gaps = 16/325 (4%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCT--PDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           LI+ +    G  D+A  +F  +     T   D Y +  L+      G + +A + F+  +
Sbjct: 35  LIQVVVSRKGK-DSASDVFEAILETKGTQISDFYVFSGLMIAYLESGFVRDAVQCFRLTK 93

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
                    T   ++  L + +  +     ++E+   G   +++ ++ LM   CK G   
Sbjct: 94  QHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMR 153

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A  +   +     RP++V+++TL+NG  K G L E   +   M   G +PD   Y  +I
Sbjct: 154 LAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILI 213

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           +  C  GK  EA    +EM+  G+ PN +T++       T++ G CK +  + A ++Y  
Sbjct: 214 NGLCKEGKLDEANELFNEMLDNGLVPNGVTFT-------TLIHGHCKNEKVDLAMEIYKQ 266

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M ++ +S D +TY++LI   CKKG++ +   ++DE++++G  PD+ +++ ++        
Sbjct: 267 MLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGD 326

Query: 458 MRQAAELLLLELMNKCVEAEVDIQN 482
           +  A     LEL NK ++  + + +
Sbjct: 327 LEIA-----LELRNKMIQESIRLDD 346



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 36/291 (12%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           KW  + +      LI     +      F   +A +A+G + D  T+S++I+ L    +  
Sbjct: 164 KWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLD 223

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
            A +L                                   F++M + G  P   ++ T++
Sbjct: 224 EANEL-----------------------------------FNEMLDNGLVPNGVTFTTLI 248

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
               +  ++ LA   Y+ M   G+ P + + N LI  LCK  G +     +  EM   G 
Sbjct: 249 HGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKK-GELKQVHDLIDEMIMNGL 307

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
            PD  +Y TLI+G C+ G +  A EL  +M  ++     V YT+LI+ LC+     +A +
Sbjct: 308 KPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEK 367

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           +  EM S G++P+  TY+ +++  CK   S  A +LL+ M      P +VT
Sbjct: 368 MLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418


>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 610

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 219/448 (48%), Gaps = 26/448 (5%)

Query: 12  KITSAQVLQLIRAEKDVNKALVIFDSATAE-YANGFRHDNSTFSLMISKLVSANQFRPAE 70
           +I+S ++  L+R ++D   AL +F    +      FR+    + LMI+KL  A  F   E
Sbjct: 8   RISSFRLASLLRLQEDPKLALHLFQHPNSNPNPKPFRYSLLCYDLMITKLGRAKMFHEME 67

Query: 71  DLLDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129
            +L +   + +    E +F +I   YGR   P +A+++FD+M  + C+ T KSY T+L +
Sbjct: 68  QILLQFKTQTRLVAKEPLFCNIITFYGRAGLPQNALKMFDEMPLYRCQRTIKSYNTLLNV 127

Query: 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
           L+   +  +    + +++   ++P   + N++I+ LC + G +D A K+  EM NR   P
Sbjct: 128 LMICKEFDVMREHFVNIKR-HVKPDGCTFNIMIRGLCSD-GRVDDALKVLDEMKNRDLVP 185

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           +  T+GTLI GLC   K+ EA +L   M       P    Y +LI GLC    +  A+RL
Sbjct: 186 NQVTFGTLIYGLCLNLKLKEAFKLKDYMVNVHGLCPNEYVYATLIKGLCAVGELSFALRL 245

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            EEM   GV+ +   YS+L+ GL K G   +   +L  M  K  + + VTY+ ++NG CK
Sbjct: 246 KEEMERDGVKVDSAIYSTLISGLFKVGRKDEVFGVLMEMELKGCKADTVTYNVMINGFCK 305

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           +   + A +ILD M     KPD   Y  I+   C  GK+ EA++  ++M   G  P+ ++
Sbjct: 306 DKDFETAYKILDEMMENRCKPDVISYNVILGELCKDGKWSEASDLFEDMPRRGCAPDVVS 365

Query: 369 WSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           + +       V  GL    +   A  +   M  +  +  S +    I   C+ GD     
Sbjct: 366 YRI-------VFDGLSDAMEFKDAAFILDEMVFKGFAPRSSSICKFINRLCQNGD----- 413

Query: 428 RIVDELVLD--GCLPDEGTWSAVMTALW 453
              ++LV     CL   G  +A+ T LW
Sbjct: 414 ---EDLVWSVLNCL---GKINAIDTELW 435



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 149/299 (49%), Gaps = 10/299 (3%)

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           +G    A K+F EMP   C     +Y TL+N L    +    +E F  ++ +   P   T
Sbjct: 96  AGLPQNALKMFDEMPLYRCQRTIKSYNTLLNVLMICKEFDVMREHFVNIK-RHVKPDGCT 154

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           +  +I GLC    V++A+++ +EM+++ + PN  T+ +L+ GLC      +A +L   M+
Sbjct: 155 FNIMIRGLCSDGRVDDALKVLDEMKNRDLVPNQVTFGTLIYGLCLNLKLKEAFKLKDYMV 214

Query: 289 SKRHR-PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           +     PN   Y+TL+ GLC  G+L  A+ + + M+  G+K D+ +Y  +IS    +G+ 
Sbjct: 215 NVHGLCPNEYVYATLIKGLCAVGELSFALRLKEEMERDGVKVDSAIYSTLISGLFKVGRK 274

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVD 406
            E    L EM L G   + +T+       N ++ G CK  D   A+++   M       D
Sbjct: 275 DEVFGVLMEMELKGCKADTVTY-------NVMINGFCKDKDFETAYKILDEMMENRCKPD 327

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            ++Y+ ++   CK G   +++ + +++   GC PD  ++  V   L D  + + AA +L
Sbjct: 328 VISYNVILGELCKDGKWSEASDLFEDMPRRGCAPDVVSYRIVFDGLSDAMEFKDAAFIL 386



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 150/312 (48%), Gaps = 27/312 (8%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTL-----INGLCRLGKIYEAKELFKEMETK----ACSPT 225
           A  +F+  PN    P  + Y  L     I  L R    +E +++  + +T+    A  P 
Sbjct: 27  ALHLFQH-PNSNPNPKPFRYSLLCYDLMITKLGRAKMFHEMEQILLQFKTQTRLVAKEPL 85

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL--CKGGCSSQAMEL 283
              + ++I    ++   + A+++F+EM     +  + +Y++L++ L  CK       M  
Sbjct: 86  ---FCNIITFYGRAGLPQNALKMFDEMPLYRCQRTIKSYNTLLNVLMICK---EFDVMRE 139

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             + I +  +P+  T++ ++ GLC +G++ +A+++LD MK + L P+   +G +I   C 
Sbjct: 140 HFVNIKRHVKPDGCTFNIMIRGLCSDGRVDDALKVLDEMKNRDLVPNQVTFGTLIYGLCL 199

Query: 344 IGKYQEAANFLDEMV-LGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR 401
             K +EA    D MV + G+ PN   ++       T+++GLC   + + A ++   M   
Sbjct: 200 NLKLKEAFKLKDYMVNVHGLCPNEYVYA-------TLIKGLCAVGELSFALRLKEEMERD 252

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            + VDS  YS+LI+   K G   +   ++ E+ L GC  D  T++ ++      +    A
Sbjct: 253 GVKVDSAIYSTLISGLFKVGRKDEVFGVLMEMELKGCKADTVTYNVMINGFCKDKDFETA 312

Query: 462 AELLLLELMNKC 473
            ++L   + N+C
Sbjct: 313 YKILDEMMENRC 324


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 156/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++   P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM + G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY    E G    +   N+L+ +  K  G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE-GEIRLAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
              P   ++ TL+NG  +LG + E   L   M+     P V TY+ LINGLC+   +++A
Sbjct: 166 SLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LF+EM   G+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G  + A  +  +M+   I  +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKG
Sbjct: 346 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG +P
Sbjct: 396 DVWTGSKLLKEMQRDGYMP 414



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 203/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH+  ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 9   FRHNLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRK-------------GKG------SAS 49

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYR----HMREIGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR    H   +    C   
Sbjct: 50  AVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKV 107

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E    G     Y +  L++   + G+I  A+ +F  +
Sbjct: 108 LEHLMKL-----KYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAI 162

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
              +  P+VV++ +L+NG  +   ++E  RL   M++ GV+P+V+TYS L++GLCK    
Sbjct: 163 TKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKM 222

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+     PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 223 DDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D   AF+   
Sbjct: 283 IYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT-------TLIDGNCKEGDLETAFEYRK 335

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  P+ GT++ ++     + 
Sbjct: 336 KMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395

Query: 457 KMRQAAELL 465
            +   ++LL
Sbjct: 396 DVWTGSKLL 404


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 207/402 (51%), Gaps = 31/402 (7%)

Query: 57  ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116
            +K++ +  FRP++ LL  +    C + +D             + L+A  ++ ++ E G 
Sbjct: 440 FTKMMLSRNFRPSDLLLTML---VCGLCKD------------GKHLEATELWFRLLEKG- 483

Query: 117 EPTPKSYITVLAI---LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
             +P S +T  A+   L    +L  A R  + M E G+     + N LI   C N G ++
Sbjct: 484 --SPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFC-NEGKVE 540

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
             F++  EM  RG  PD YTY  L+ GLC +GK+ +A +L+ E +       + TY  ++
Sbjct: 541 GCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMM 600

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
            G C++  +E+   LF E+ SK +E N   Y+ ++   C+ G  + A++LL+ M SK   
Sbjct: 601 EGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGIL 660

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
           PN  TYS+L++G+C  G +++A  ++D M+ +G  P+   Y  +I  +C +G+   A + 
Sbjct: 661 PNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAEST 720

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSS 412
             EM+   I PN+ T+++       ++ G CK  +  +A  + + M+   I  D +TY+ 
Sbjct: 721 WLEMISFNIHPNKFTYTV-------MIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNV 773

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           L   FCK  D+  + ++ D++  +G   DE T++ ++   W+
Sbjct: 774 LTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG-WN 814



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 192/412 (46%), Gaps = 10/412 (2%)

Query: 51  STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDK 110
           + +SLM      ++Q   AE+ L+ +      I  D   S+     +  R   A R    
Sbjct: 385 TLYSLM-QGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKM 443

Query: 111 MKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           M      P+      ++  L ++ +   A   +  + E G      + N LI  LC  +G
Sbjct: 444 MLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLC-GAG 502

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            +  A +I +EM  RG   D  TY  LI G C  GK+     L +EM  +   P + TY 
Sbjct: 503 KLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYN 562

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            L+ GLC    +++A++L++E ++ G+  N+ TY  +M+G CK         L   ++SK
Sbjct: 563 FLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSK 622

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
           +   N + Y+ ++   C+ G +  A+++L+ MK +G+ P+   Y  +I   C+IG  ++A
Sbjct: 623 KMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDA 682

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLT 409
            + +DEM   G  PN + ++        ++ G CK    + A   +L M + +I  +  T
Sbjct: 683 KHLIDEMRKEGFVPNVVCYT-------ALIGGYCKLGQMDTAESTWLEMISFNIHPNKFT 735

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
           Y+ +I  +CK G++ K+  ++ ++   G +PD  T++ +         M  A
Sbjct: 736 YTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNA 787



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 187/413 (45%), Gaps = 46/413 (11%)

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
            VF  M E  C P   S+  V+  L +  +++ A   +  M ++GI P V + N +I  L
Sbjct: 230 EVFRVMSEGAC-PDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGL 288

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C+N G +D AF++  +M  +G  P+  TYG LINGL +L    +   +  EM     +P 
Sbjct: 289 CQN-GRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPN 347

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG----------- 274
           VV + +LI+G C+  ++E A+++ + M SK + P   T  SLM G CK            
Sbjct: 348 VVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALE 407

Query: 275 ------------GCSS------------QAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
                        C S             A    +MM+S+  RP+ +  + L+ GLCK+G
Sbjct: 408 EILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDG 467

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           K  EA E+  R+  +G          +I   C  GK  EA+  + EM+  G+  +R+T+ 
Sbjct: 468 KHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITY- 526

Query: 371 LHIRIHNTVVQGLCKTDPNRA-FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N ++ G C        F++   M  R I  D  TY+ L+   C  G +  + ++
Sbjct: 527 ------NALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKL 580

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            DE    G + +  T+  +M       ++ +  E L  EL++K +E    + N
Sbjct: 581 WDEFKASGLISNIHTYGIMMEGYCKANRI-EDVENLFNELLSKKMELNSIVYN 632



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 174/347 (50%), Gaps = 32/347 (9%)

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
           FY   R+ G  P + + N L+ +L K +   +   ++FR M    C PD +++  +IN L
Sbjct: 197 FYLLARK-GTFPSLKTCNFLLSSLVK-ANEFEKCCEVFRVMSEGAC-PDVFSFTNVINAL 253

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+ GK+  A ELF +ME    SP VVTY  +INGLCQ+  ++ A  L E+M  KGV+PN+
Sbjct: 254 CKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNL 313

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            TY +L++GL K     +   +L  MI     PN+V ++ L++G CK G ++ A++I D 
Sbjct: 314 KTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDV 373

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG--ITPNRLTWSLH-----IR 374
           M  + + P +     ++  FC   + + A N L+E++  G  I P+     +H      R
Sbjct: 374 MISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFR 433

Query: 375 IHNT---------------------VVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSS 412
            H+                      +V GLCK   +  A +++  +  +      +T ++
Sbjct: 434 YHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNA 493

Query: 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
           LI   C  G + +++RIV E++  G   D  T++A++    +  K+ 
Sbjct: 494 LIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVE 540



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 207/428 (48%), Gaps = 10/428 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + +  T+  +I+ L+  N F     +LD +     +    +F ++  GY ++     A
Sbjct: 308 GVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGA 367

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++ D M      PT  +  +++    + +Q++ A      +   G+     +   ++  
Sbjct: 368 LKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHW 427

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK      +AF+  + M +R   P       L+ GLC+ GK  EA EL+  +  K    
Sbjct: 428 LCKKF-RYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPA 486

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           + VT  +LI+GLC +  + EA R+ +EM  +G+  +  TY++L+ G C  G       L 
Sbjct: 487 SKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLR 546

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  +  +P+I TY+ LL GLC  GKL +A+++ D  K  GL  +   YG ++  +C  
Sbjct: 547 EEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKA 606

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
            + ++  N  +E++   +  N + +++ I+ H       C+  +   A Q+  +M+++ I
Sbjct: 607 NRIEDVENLFNELLSKKMELNSIVYNIIIKAH-------CQNGNVAAALQLLENMKSKGI 659

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             +  TYSSLI   C  G +  +  ++DE+  +G +P+   ++A++       +M   AE
Sbjct: 660 LPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQM-DTAE 718

Query: 464 LLLLELMN 471
              LE+++
Sbjct: 719 STWLEMIS 726



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/451 (24%), Positives = 200/451 (44%), Gaps = 40/451 (8%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC--RGYGRVHRPLDAMR 106
           D  +F+ +I+ L    +   A +L  ++  EK  I+ ++    C   G  +  R  +A  
Sbjct: 242 DVFSFTNVINALCKGGKMENAIELFMKM--EKLGISPNVVTYNCIINGLCQNGRLDNAFE 299

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           + +KM   G +P  K+Y  ++  L++ N           M   G  P V   N LI   C
Sbjct: 300 LKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYC 359

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G ++ A KI   M ++  TP S T  +L+ G C+  +I  A+   +E+ +   S   
Sbjct: 360 K-MGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHP 418

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
               S+++ LC+      A R  + M S+   P+    + L+ GLCK G   +A EL   
Sbjct: 419 DNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFR 478

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           ++ K    + VT + L++GLC  GKL EA  I+  M  +GL  D   Y  +I  FC+ GK
Sbjct: 479 LLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 538

Query: 347 YQEAANFLDEMVLGGITPNRLTWSL----------------------------HIRIHNT 378
            +      +EM   GI P+  T++                             +I  +  
Sbjct: 539 VEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGI 598

Query: 379 VVQGLCKT----DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
           +++G CK     D    F   LS   + + ++S+ Y+ +I   C+ G++  + ++++ + 
Sbjct: 599 MMEGYCKANRIEDVENLFNELLS---KKMELNSIVYNIIIKAHCQNGNVAAALQLLENMK 655

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G LP+  T+S+++  + +   +  A  L+
Sbjct: 656 SKGILPNCATYSSLIHGVCNIGLVEDAKHLI 686



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 9/291 (3%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A  +F  +  +G  P   T   L++ L +  +  +  E+F+ M   AC P V ++T++IN
Sbjct: 193 AVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVIN 251

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
            LC+   +E A+ LF +M   G+ PNV TY+ +++GLC+ G    A EL + M  K  +P
Sbjct: 252 ALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQP 311

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N+ TY  L+NGL K     +   +LD M   G  P+  ++  +I  +C +G  + A    
Sbjct: 312 NLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIK 371

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
           D M+   ITP  +T         +++QG CK+D    A      + +  +S+      S+
Sbjct: 372 DVMISKNITPTSVTLY-------SLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSV 424

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           +   CKK   H + R    ++     P +   + ++  L    K  +A EL
Sbjct: 425 VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATEL 475



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 1/261 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ ++  L +  +   A  L D             +  +  GY + +R  D 
Sbjct: 553 GIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDV 612

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             +F+++     E     Y  ++    +   +  A +   +M+  GI P  A+ + LI  
Sbjct: 613 ENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHG 672

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           +C N G ++ A  +  EM   G  P+   Y  LI G C+LG++  A+  + EM +    P
Sbjct: 673 VC-NIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHP 731

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TYT +I+G C+  ++E+A  L  +M+  G+ P+V TY+ L +G CK      A ++ 
Sbjct: 732 NKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVC 791

Query: 285 QMMISKRHRPNIVTYSTLLNG 305
             M ++    + +TY+TL++G
Sbjct: 792 DQMATEGLPVDEITYTTLVHG 812



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 114/228 (50%), Gaps = 1/228 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G   +  T+ +M+     AN+    E+L + +  +K ++   ++  I + + +     
Sbjct: 586 ASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVA 645

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A+++ + MK  G  P   +Y +++  +     ++ A      MR+ G  P V     LI
Sbjct: 646 AALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALI 705

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G MD A   + EM +    P+ +TY  +I+G C+LG + +A  L  +M+    
Sbjct: 706 GGYCK-LGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGI 764

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270
            P VVTY  L NG C++  ++ A ++ ++M ++G+  +  TY++L+ G
Sbjct: 765 VPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 156/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++   P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM + G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 204/430 (47%), Gaps = 57/430 (13%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++Q++ + K    A  +F +A  E     R D   FS +I+  + +   R A +      
Sbjct: 35  LIQIVVSRKGKGSASAVF-AAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTK 93

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE------PTPKSYITVLA-IL 130
           + K  +  D     CR   +V   L  ++ F  +  F  E      P    +  +L    
Sbjct: 94  EHKFRVPFDT----CR---KVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSF 146

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V+E +++LA   +  + +  ++P V S N L+    K  G +D  F++   M   G  PD
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIK-LGDLDEGFRLKNAMQASGVQPD 205

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YTY  LINGLC+  K+ +A ELF EM      P  VT+T+LI+G C++  V+ AM +++
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M S+ + P++ TY++L+ GLCK G   QA +L+  M  K  +P+ +TY+TL++G CKEG
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEG 325

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L+ A E   RM  + ++ D   Y  +IS  C  G+  +A   L EM+  G+ P      
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------ 379

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                                              +  TY+ +I  FCKKGD+   ++++
Sbjct: 380 -----------------------------------EIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 431 DELVLDGCLP 440
            E+  DG +P
Sbjct: 405 KEMQRDGYMP 414



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 205/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L + +Q RP    L ++   +            +G G       A 
Sbjct: 9   FRHTLQSYCTMIHFLCT-HQMRPEAKTLIQIVVSR------------KGKG------SAS 49

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYR----HMREIGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR    H   +    C   
Sbjct: 50  AVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKV 107

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E    G     Y +  L++   + G+I  A+ +F  +
Sbjct: 108 LEHLMKL-----KYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAI 162

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
              +  P+VV++ +L+NG  +   ++E  RL   M++ GV+P+V+TYS L++GLCK    
Sbjct: 163 TKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKM 222

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   MI     PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 223 DDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D   AF+   
Sbjct: 283 IYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT-------TLIDGNCKEGDLETAFEYRK 335

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  P+ GT++ ++     + 
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395

Query: 457 KMRQAAELL 465
            +   ++LL
Sbjct: 396 DVWTGSKLL 404


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 203/409 (49%), Gaps = 9/409 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G++ +N T + ++  L    + + A D  D V  +   + E  + ++  G  ++ R +DA
Sbjct: 149 GYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDA 208

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++  +M+    +P    Y  ++    ++     A   Y  + ++GI P + +   LI+ 
Sbjct: 209 FQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRG 268

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C+ +G      ++  EM N+   P+ YT+  LI+  CR GK+ EA+ +F  M  +   P
Sbjct: 269 FCR-TGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQP 327

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +VT+ +LI+G C   +V EA +LF+ +  +G+ P+V++Y+ L+ G CK     +A+ L 
Sbjct: 328 DIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLF 387

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  K    +IV YS+L++GLCK G++  A E+   +   G  P+   Y  +I  FC I
Sbjct: 388 NEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKI 447

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS-MRNRSI 403
                       M   G+TP  LT+       N ++ G CK+   R     LS M+++++
Sbjct: 448 QDIDMGIELFKLMCGKGLTPTVLTY-------NILINGYCKSKRIREAMNLLSVMQSKNL 500

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
           + DS+TY+SL    CK G I  +  +   + + G   D  T++ ++ A 
Sbjct: 501 APDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAF 549



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 202/416 (48%), Gaps = 20/416 (4%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV----SANQFRP 68
           IT   V++ +    +V KA+   D+  A+   G   D   +  +I+ L     S + F+ 
Sbjct: 155 ITLTTVMKGLCINGEVQKAMDFHDNVAAQ---GMLLDEVCYGTLINGLCKIGRSIDAFQL 211

Query: 69  AEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
            +++  +V K    I   I  S C+          A  ++ K+ + G +P   +Y +++ 
Sbjct: 212 LQEMEGQVVKPNIVIYNMIIDSFCKD----ELTCKARDLYLKIVDMGIDPDILTYTSLIR 267

Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
                 Q     +    M    I P V + NVLI A C+  G M  A  +F  M  RG  
Sbjct: 268 GFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCR-KGKMIEAQGMFNLMVKRGQQ 326

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD  T+ TLI+G C  G + EA++LF  +  +   P V +YT LI G C+ K ++EA+ L
Sbjct: 327 PDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSL 386

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
           F EMR K +  ++  YSSL+DGLCK G  S A EL   + +    PN++TY+ L++  CK
Sbjct: 387 FNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCK 446

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
              +   +E+   M  +GL P    Y  +I+ +C   + +EA N L  M    + P+ +T
Sbjct: 447 IQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSIT 506

Query: 369 WSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           +       N++  GLCK+   + A++++  M      VD  TY+ L+  FCK  D+
Sbjct: 507 Y-------NSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 185/370 (50%), Gaps = 10/370 (2%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H P+ A+ +  +M   G  P+  +    +       ++  AF     + + G QP   +L
Sbjct: 99  HCPV-AISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITL 157

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
             ++K LC N G +  A      +  +G   D   YGTLINGLC++G+  +A +L +EME
Sbjct: 158 TTVMKGLCIN-GEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEME 216

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
            +   P +V Y  +I+  C+ +   +A  L+ ++   G++P++ TY+SL+ G C+ G   
Sbjct: 217 GQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWG 276

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +  +L+  M++K   PN+ T++ L++  C++GK+ EA  + + M  +G +PD   +  +I
Sbjct: 277 EVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLI 336

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLS 397
           S  C  G   EA    D +   GI P+   WS     +  ++ G CK    + A  ++  
Sbjct: 337 SGHCLHGNVLEARKLFDTVFERGILPD--VWS-----YTILIIGYCKCKRIDEAVSLFNE 389

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           MR +++ +D + YSSLI   CK G I  +  +   +  DG  P+  T++ ++ A    + 
Sbjct: 390 MRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQD 449

Query: 458 MRQAAELLLL 467
           +    EL  L
Sbjct: 450 IDMGIELFKL 459



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 143/281 (50%), Gaps = 8/281 (2%)

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A  +F  + N    P    + T+I  + ++     A  L K+M  K  +P++ T + 
Sbjct: 65  IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
            IN  C    +  A  +   +  +G +PN  T +++M GLC  G   +AM+    + ++ 
Sbjct: 125 WINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQG 184

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              + V Y TL+NGLCK G+  +A ++L  M+ Q +KP+  +Y  II  FC      +A 
Sbjct: 185 MLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKAR 244

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
           +   ++V  GI P+ LT++       ++++G C+T       Q+   M N++I+ +  T+
Sbjct: 245 DLYLKIVDMGIDPDILTYT-------SLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTF 297

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           + LI  FC+KG + ++  + + +V  G  PD  T++ +++ 
Sbjct: 298 NVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISG 338



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 43/268 (16%)

Query: 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK----- 290
           L     +++A+ LF  + +    P+V  +++++  + K      A+ LL+ M+ K     
Sbjct: 59  LSSFNGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPS 118

Query: 291 ------------------------------RHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
                                          ++PN +T +T++ GLC  G++Q+A++  D
Sbjct: 119 IFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHD 178

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            +  QG+  D   YG +I+  C IG+  +A   L EM    + PN       I I+N ++
Sbjct: 179 NVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPN-------IVIYNMII 231

Query: 381 QGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
              CK +   +A  +YL + +  I  D LTY+SLI  FC+ G   +  +++ E+V     
Sbjct: 232 DSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNIN 291

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLL 467
           P+  T++ ++ A   + KM +A  +  L
Sbjct: 292 PNVYTFNVLIDAFCRKGKMIEAQGMFNL 319


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 156/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++   P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM + G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 204/430 (47%), Gaps = 57/430 (13%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++Q++ + K    A  +F +A  E     R D   FS +I+  + +   R A +      
Sbjct: 35  LIQIVVSRKGKGSASAVF-AAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTK 93

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE------PTPKSYITVLA-IL 130
           + K  +  D     CR   +V   L  ++ F  +  F  E      P    +  +L    
Sbjct: 94  EHKFRVPFDT----CR---KVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSF 146

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V+E +++LA   +  + +  ++P V S N L+    K  G +D  F++   M   G  PD
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIK-LGDLDEGFRLKNAMQASGVQPD 205

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YTY  LINGLC+  K+ +A ELF EM      P  VT+T+LI+G C++  V+ AM +++
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M S+ + P++ TY++L+ GLCK G   QA +L+  M  K  +P+ +TY+TL++G CKEG
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEG 325

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L+ A E   RM  + ++ D   Y  +IS  C  G+  +A   L EM+  G+ P      
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------ 379

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                                              +  TY+ +I  FCKKGD+   ++++
Sbjct: 380 -----------------------------------EIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 431 DELVLDGCLP 440
            E+  DG +P
Sbjct: 405 KEMQRDGYMP 414



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 154/275 (56%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++   + G+I  A+ +F  +   +  P+VV++ +L+NG  +   ++E  RL   
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A EL   M+     PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +DEM + G+ P+++T++ 
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT- 315

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK  D   AF+    M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  P+ GT++ ++     +  +   ++LL
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 138/285 (48%), Gaps = 11/285 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           K  G+  A F    E   +G    D Y +  LI      G + +A E ++  +       
Sbjct: 43  KGKGSASAVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVP 100

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             T   ++  L + K  +     +EE    G   +++ ++ LM    K G    A  +  
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFD 160

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I+  C   
Sbjct: 161 AITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKES 220

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSIS 404
           K  +A    DEM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+S
Sbjct: 221 KMDDANELFDEMLDNGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
            D +TY++LI   CKKGD+ ++  ++DE+ + G  PD+ T++ ++
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 219/475 (46%), Gaps = 44/475 (9%)

Query: 17  QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE-DLLDR 75
           ++L+LI++E D   AL   +   +            F L+     S+    P   +LL R
Sbjct: 15  RLLELIKSEPDATAALAHLELLVSTRPAFPPPQPLLFHLLRRLATSSPSHLPCLLNLLPR 74

Query: 76  VNKEKCDITEDIFLSICRGYGRVHRP---LDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           + + +   +E   L +   + R   P   LDA R    +   GC P  +S+  +L   V 
Sbjct: 75  L-RHRPRFSESAALVVLSAFSRAIMPDAALDAFRALPSI--LGCNPGIRSHNALLDAFVR 131

Query: 133 ENQLKLAFRFYRHMREIG----IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
             +   A  F+  +        I P + + N+++++LC   G +D A  +F  +  R   
Sbjct: 132 ARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCAR-GDLDRAVTLFDSLRRRQVA 190

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD  TY TL+ GL +  ++  A +L  EM      P VV Y +L+ G  ++   E+ MR+
Sbjct: 191 PDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRV 250

Query: 249 FEEM-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           ++++ +  G  PN+ TY+ ++DGLCK G   +  E+ + M++   +P+++TY  L++GLC
Sbjct: 251 WDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLC 310

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           + G +  A  +   +   GL  DA +Y  ++  FC  G+ QEA  F D     G+  N  
Sbjct: 311 RSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLR 369

Query: 368 TWSLHIR-----------------------------IHNTVVQGLCKTD-PNRAFQVYLS 397
           T+++ I+                                T++ GLC+    N+AF ++  
Sbjct: 370 TYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE 429

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
            R     +D  +YSS+I   C  G +  + ++ +++  DGC P+   ++A+++  
Sbjct: 430 ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGF 484



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 206/412 (50%), Gaps = 10/412 (2%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           AN  + D  T+ ++I  L  +     A  +   + K    I   ++ S+ +G+ +  R  
Sbjct: 292 ANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQ 351

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVL 161
           +A + +D     G     ++Y  ++  L +   +  A   +  + +++   P   +   L
Sbjct: 352 EAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTL 410

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I  LC+N G  + AF IF E    G   D ++Y ++INGLC +G++ +A +++++M+   
Sbjct: 411 IHGLCQN-GFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG 469

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           C P    Y +LI+G CQ     +A+R++ +M   G  P V TY++L+DGLCK     +A 
Sbjct: 470 CKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEAS 529

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            + + M+     P+I TY +L+ GL  + K+ +A+ I  ++  +GLK D  ++  +I   
Sbjct: 530 SVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGL 589

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRN 400
           C  GK  EA +   +M      P  L        +NT++ GL +T   ++A  ++ S+  
Sbjct: 590 CSAGKVDEALHVFSDMKEKKNCPPNLV------TYNTLMDGLYETGYIDKAATLWTSITE 643

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             +  D ++Y++ I   C    IH+  +++DE++  G +P   TW+ ++ A+
Sbjct: 644 DGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAV 695



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 137/517 (26%), Positives = 231/517 (44%), Gaps = 76/517 (14%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL+ + A  D+++A+ +FDS           D  T+S ++  L   ++   A DLLD + 
Sbjct: 164 VLRSLCARGDLDRAVTLFDSLRRRQV---APDCITYSTLMCGLAKQDRLDHALDLLDEMP 220

Query: 78  KEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEE 133
           +       +  +  L  C   G   +    MRV+DK+ K+ G  P   +Y  +L  L + 
Sbjct: 221 RSGVQPDVVCYNALLGGCFKAGEFEK---VMRVWDKLVKDPGARPNLATYNVMLDGLCKF 277

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
            + K     +  M    +QP V +  +LI  LC+ SG +D A +++ E+   G   D+  
Sbjct: 278 GRFKEVGEVWERMVANNLQPDVITYGILIHGLCR-SGDVDGAARVYSEIIKTGLVIDAAM 336

Query: 194 YGTLINGLCRLGKIYEAK----------------------------------ELFKEMET 219
           Y +L+ G C+ G++ EA                                   EL+  +E 
Sbjct: 337 YNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEK 396

Query: 220 K-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
             AC P  VT+ +LI+GLCQ+    +A  +FEE R  G + +VF+YSS+++GLC  G   
Sbjct: 397 DVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLV 456

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
            A+++ + M     +PN   Y+ L++G C+  +  +AV I  +M   G  P    Y  +I
Sbjct: 457 DAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLI 516

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------------------------ 374
              C   KYQEA++   EMV  G TP+  T+   IR                        
Sbjct: 517 DGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLK 576

Query: 375 ----IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSL-TYSSLITCFCKKGDIHKSAR 428
               +HN ++ GLC     + A  V+  M+ +     +L TY++L+    + G I K+A 
Sbjct: 577 VDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAAT 636

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +   +  DG  PD  +++  +  L    ++ +  +LL
Sbjct: 637 LWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLL 673



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 210/434 (48%), Gaps = 13/434 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+++++  L +      A  L D + + +       + ++  G  +  R   A+ + D+M
Sbjct: 160 TYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEM 219

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFY-RHMREIGIQPCVASLNVLIKALCKNSG 170
              G +P    Y  +L    +  + +   R + + +++ G +P +A+ NV++  LCK  G
Sbjct: 220 PRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCK-FG 278

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
                 +++  M      PD  TYG LI+GLCR G +  A  ++ E+           Y 
Sbjct: 279 RFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYN 338

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           SL+ G CQ+  V+EA + ++     G+  N+ TY+ ++ GL   G   +A+EL  ++   
Sbjct: 339 SLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKD 397

Query: 291 RH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
               P+ VT+ TL++GLC+ G   +A  I +  ++ G + D   Y  +I+  C++G+  +
Sbjct: 398 VACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVD 457

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSL 408
           A    ++M   G  PN         I+N ++ G C+    + A ++Y  M +   S   +
Sbjct: 458 AVKVYEKMDKDGCKPNS-------HIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVI 510

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468
           TY++LI   CK     +++ +  E+V +G  PD  T+ +++  L+  +K+  A   +  +
Sbjct: 511 TYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALS-IWKQ 569

Query: 469 LMNKCVEAEVDIQN 482
           ++ K ++ +V + N
Sbjct: 570 ILYKGLKVDVMMHN 583



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 160/286 (55%), Gaps = 5/286 (1%)

Query: 29  NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88
           NKA  IF+ A     +G + D  ++S MI+ L +  +   A  + ++++K+ C     I+
Sbjct: 421 NKAFTIFEEARV---SGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIY 477

Query: 89  LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
            ++  G+ +V+R  DA+R++ KM + GC PT  +Y T++  L +  + + A    R M E
Sbjct: 478 NALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVE 537

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            G  P + +   LI+ L  +   +D A  I++++  +G   D   +  LI+GLC  GK+ 
Sbjct: 538 NGFTPDITTYGSLIRGLFSDK-KIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVD 596

Query: 209 EAKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
           EA  +F +M E K C P +VTY +L++GL ++  +++A  L+  +   G+EP++ +Y++ 
Sbjct: 597 EALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTR 656

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           + GLC      + ++LL  ++S+   P ++T++ L+  + K G +Q
Sbjct: 657 IKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 156/303 (51%), Gaps = 6/303 (1%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLD--RVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106
           D  TF  +I  L        A  + +  RV+ ++ D+    + S+  G   V R +DA++
Sbjct: 403 DTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFS--YSSMINGLCNVGRLVDAVK 460

Query: 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166
           V++KM + GC+P    Y  +++   +  +   A R Y  M + G  P V + N LI  LC
Sbjct: 461 VYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLC 520

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K     +A+  + REM   G TPD  TYG+LI GL    KI +A  ++K++  K     V
Sbjct: 521 KAEKYQEAS-SVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDV 579

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
           + +  LI+GLC +  V+EA+ +F +M+ K    PN+ TY++LMDGL + G   +A  L  
Sbjct: 580 MMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWT 639

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            +      P+I++Y+T + GLC   ++ E +++LD +  +G+ P    +  ++      G
Sbjct: 640 SITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYG 699

Query: 346 KYQ 348
             Q
Sbjct: 700 PIQ 702


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 197/399 (49%), Gaps = 44/399 (11%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F++M      P    +  +L+ LV+  +   A    +H+   GI   + +LN+LI
Sbjct: 52  DAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILI 111

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYT----------------------------- 193
              C + G +  +F +   +  RG  PD  T                             
Sbjct: 112 NCFC-HLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEF 170

Query: 194 ------YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
                 YGTLINGLC++G+   A +L + +E ++  P VV Y  +I+ LC++K V EA  
Sbjct: 171 QLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACN 230

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L+ EM +K + PNV TY++L+ G C  GC  +A+ LL  M  K   P++ T+S L++ L 
Sbjct: 231 LYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALG 290

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           KEGK++ A  +L  M    +KPD   Y  ++  +  + + + A    + M   G+TP   
Sbjct: 291 KEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQ 350

Query: 368 TWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426
           ++++       ++ GLCKT   + A  ++  M+++++  +++T++SLI   CK G I   
Sbjct: 351 SYTI-------MIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYV 403

Query: 427 ARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             +VD++     L D  T+S+++ AL     + QA  L 
Sbjct: 404 WDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALF 442



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 201/422 (47%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+  D  T + +I  L    + + A    D V   +  +    + ++  G  ++     A
Sbjct: 134 GYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAA 193

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++   ++E   +P    Y  ++  L +   +  A   Y  M    I P V +   LI  
Sbjct: 194 IQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYG 253

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  A  +  EM  +   PD YT+  LI+ L + GK+  AK +   M      P
Sbjct: 254 FCI-MGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKP 312

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VVTY SL++G      V+ A  +F  M   GV P V +Y+ ++DGLCK     +A+ L 
Sbjct: 313 DVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLF 372

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   PN +T+++L++GLCK G++    +++D+M+ +    D   Y  +I   C  
Sbjct: 373 EEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKN 432

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSI 403
               +A     +M+   I P+  T+++       ++ GLCK    + A +V+  +  +  
Sbjct: 433 CHLDQAIALFKKMITQEIQPDMYTYTI-------LIDGLCKGGRLKIAQEVFQHLLIKGY 485

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            +D  TY+ +I+ FCK G   ++  ++ ++  +GC+P+  T+  ++ AL+++ +  +A +
Sbjct: 486 HLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEK 545

Query: 464 LL 465
           LL
Sbjct: 546 LL 547



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 139/229 (60%), Gaps = 1/229 (0%)

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
           N++K A   +  M + G+ P V S  ++I  LCK +  +D A  +F EM ++   P++ T
Sbjct: 328 NEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCK-TKMVDEAISLFEEMKHKNVIPNTIT 386

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           + +LI+GLC+ G+I    +L  +M  ++    V+TY+SLI+ LC++  +++A+ LF++M 
Sbjct: 387 FNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMI 446

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
           ++ ++P+++TY+ L+DGLCKGG    A E+ Q ++ K +  +I TY+ +++G CK G   
Sbjct: 447 TQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFD 506

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           EA+ +L +M+  G  P+A  +  II    +  +  +A   L EM+  G+
Sbjct: 507 EALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARGL 555



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 147/296 (49%), Gaps = 10/296 (3%)

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
           N    + A  +F  M      P ++ +  +++ L ++ +   A  L K ++ K  +  +V
Sbjct: 46  NHNDHNDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLV 105

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           T   LIN  C    +  +  +   +  +G  P+V T ++L+ GLC  G   +A++    +
Sbjct: 106 TLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDV 165

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
           ++   + + ++Y TL+NGLCK G+ + A++++  ++ + +KPD  +Y  II   C     
Sbjct: 166 VALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLV 225

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVD 406
            EA N   EM    I PN +T++       T++ G C       A  +   M+ ++I+ D
Sbjct: 226 GEACNLYSEMNAKQIYPNVVTYT-------TLIYGFCIMGCLIEAVALLNEMKLKNINPD 278

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCL-PDEGTWSAVMTALWDRRKMRQA 461
             T+S LI    K+G + K+A+IV  +++   + PD  T+++++   +   +++ A
Sbjct: 279 VYTFSILIDALGKEGKM-KAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHA 333


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 209/486 (43%), Gaps = 54/486 (11%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           ++  E  + KA  +FD        G       ++ +I         R   +LL  + K  
Sbjct: 359 VMSKEGAMEKAKALFDGMIT---FGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRN 415

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
             I+   + +  +G         A  +  +M   GC P    Y T++   +++++   A 
Sbjct: 416 IVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAV 475

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT---- 196
           R  + MRE GI P     N LI  L K +  MD A     EM   G  PD++TYG     
Sbjct: 476 RVLKEMREQGIAPDTFCYNSLIIGLSK-AKKMDEARSFLLEMVENGFKPDAFTYGAFISG 534

Query: 197 -------------------------------LINGLCRLGKIYEAKELFKEMETKACSPT 225
                                          LIN  C+ GK+ EA   F+ M  +     
Sbjct: 535 YIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGD 594

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
             TYT L+NGL ++  V +A  +F EMR KG+ P+VF+Y +L+DG  K G   +A  +  
Sbjct: 595 AKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFD 654

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
            M+      N++ Y+ LL G C+ G++++A E+LD M  +G  P+A  Y  II  +C  G
Sbjct: 655 EMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSG 714

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSIS 404
              EA    DEM L G+ P+         ++ T+V G C+  D  RA  ++     +  +
Sbjct: 715 DLAEAFQLFDEMKLKGLVPDSF-------VYTTLVDGCCRLNDVERAITIF-ETNEKGCA 766

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL-----PDEGTWSAVMTALWDRRKMR 459
             S  +++LI    K G    +  +++ L +DG       P++ T++ ++  L     + 
Sbjct: 767 SSSAPFNALINWVFKFGKTELTTDMINRL-MDGSFDKFGKPNDVTYNIMIDYLCKEGNLE 825

Query: 460 QAAELL 465
            A EL 
Sbjct: 826 AAKELF 831



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 212/470 (45%), Gaps = 64/470 (13%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRG----YGR 97
           NGF+ D  T+   IS  + A +F  A    D+  KE  +C +  +  L  C G    Y +
Sbjct: 519 NGFKPDAFTYGAFISGYIEAGEFASA----DKYVKEMLECGVIPNKVL--CTGLINEYCK 572

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
             + ++A   F  M E G     K+Y  ++  LV+  ++  A   +  MR  GI P V S
Sbjct: 573 KGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFS 632

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
              LI    K  G M  A  IF EM   G T +   Y  L+ G CR G+I +AKEL  EM
Sbjct: 633 YGTLIDGFSK-LGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEM 691

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK---- 273
             K   P  VTY ++I+G C+S  + EA +LF+EM+ KG+ P+ F Y++L+DG C+    
Sbjct: 692 SGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV 751

Query: 274 -----------GGCSSQA---------------MELLQMMIS--------KRHRPNIVTY 299
                       GC+S +                EL   MI+        K  +PN VTY
Sbjct: 752 ERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTY 811

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           + +++ LCKEG L+ A E+   M+   L P    Y  +++ +  +G+  E  +  DE++ 
Sbjct: 812 NIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIA 871

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITC--- 416
            GI P+ + +S+       ++    K        V L       +VD     S+ TC   
Sbjct: 872 AGIEPDNIMYSV-------IINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRAL 924

Query: 417 ---FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
              F K G++  + ++V+ +V    +PD  T   ++         R AA+
Sbjct: 925 LSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQRMAAD 974



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 221/471 (46%), Gaps = 52/471 (11%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL--SICRGYGRVHR 100
           A+G R +   ++ +I   +  ++F  A  +L  + ++   I  D F   S+  G  +  +
Sbjct: 448 ASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQ--GIAPDTFCYNSLIIGLSKAKK 505

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             +A     +M E G +P   +Y   ++  +E  +   A ++ + M E G+ P       
Sbjct: 506 MDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTG 565

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           LI   CK    ++A    FR M  +G   D+ TY  L+NGL + GK+ +A+E+F EM  K
Sbjct: 566 LINEYCKKGKVIEAC-SAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGK 624

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
             +P V +Y +LI+G  +  ++++A  +F+EM   G+  NV  Y+ L+ G C+ G   +A
Sbjct: 625 GIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKA 684

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            ELL  M  K   PN VTY T+++G CK G L EA ++ D MKL+GL PD+ +Y  ++  
Sbjct: 685 KELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDG 744

Query: 341 FCDI----------------------------------GKYQEAANFLDEMVLGGI---- 362
            C +                                  GK +   + ++ ++ G      
Sbjct: 745 CCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFG 804

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            PN +T+       N ++  LCK  +   A +++  M+  ++    +TY+SL+  + K G
Sbjct: 805 KPNDVTY-------NIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMG 857

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472
              +   + DE++  G  PD   +S ++ A   +  M   A +LL ++  K
Sbjct: 858 RRSEMFSVFDEVIAAGIEPDNIMYSVIINAFL-KEGMTTKALVLLDQMFAK 907



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 206/451 (45%), Gaps = 15/451 (3%)

Query: 21  LIRAEKDVNKALVIFDSA----TAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV 76
           L++ E+++  A +  D A     +    G      +++L+I  L    +   A+ LL  +
Sbjct: 247 LLKTEEELGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEM 306

Query: 77  NKEKCDITEDIFLSICRGYGRVHRPLDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQ 135
           N       +++  SI        R  DA   +  +M   G    P  Y   + ++ +E  
Sbjct: 307 NSVGL-FADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGA 365

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           ++ A   +  M   G+ P   +   LI+   +    +   +++  E+  R      YTYG
Sbjct: 366 MEKAKALFDGMITFGVTPGARAYASLIEGFFREK-NVRKGYELLVEIKKRNIVISPYTYG 424

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           T + G+C  G +  A  + KEM    C P VV YT+LI    Q     +A+R+ +EMR +
Sbjct: 425 TAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQ 484

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G+ P+ F Y+SL+ GL K     +A   L  M+    +P+  TY   ++G  + G+   A
Sbjct: 485 GIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASA 544

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
            + +  M   G+ P+  L   +I+ +C  GK  EA +    MV  GI  +  T+++    
Sbjct: 545 DKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTV---- 600

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
              ++ GL K    N A +++  MR + I+ D  +Y +LI  F K G++ K++ I DE+V
Sbjct: 601 ---LMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMV 657

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             G   +   ++ ++       ++ +A ELL
Sbjct: 658 QAGLTSNVIIYNMLLGGFCRSGEIEKAKELL 688



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 118/483 (24%), Positives = 209/483 (43%), Gaps = 51/483 (10%)

Query: 10  STKITSAQVLQLIRAEK--DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           S +I    VL ++R+++  D +K L  F+   ++     + D  +FS +   L +     
Sbjct: 57  SIEINPEVVLSVLRSKRVDDPSKLLSFFNLVDSQKVTEQKLD--SFSFLALDLCNFGSIE 114

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
            A  ++ R+ + K  + E ++ SI R         D     D++  FG          ++
Sbjct: 115 KAHSVVIRMIERKWPVAE-VWSSIVRCLREFVGKSD-----DRVLLFG---------ILI 159

Query: 128 AILVEENQLKLAFRFYRHMREIGIQ--PCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
              +E+  L  A   +   +++ +   P +A  N L+ AL K +  +D  + +++ M  R
Sbjct: 160 DGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRN-RLDLFWDVYKGMVER 218

Query: 186 GCTPDSYTYGTLINGLCRLGKIY---------------------EAKELFKEMETKACSP 224
               D  +Y  LI   CR G +                      EA EL K M  K   P
Sbjct: 219 NVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKKSMSCKGLVP 278

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           +  +Y  LI+GLC+ K +E+A  L  EM S G+  +   YS L+DGL KG  +  A  L+
Sbjct: 279 SRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLV 338

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M+S     + + Y   +  + KEG +++A  + D M   G+ P A  Y  +I  F   
Sbjct: 339 HEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFRE 398

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403
              ++    L E+    I  +  T+        T V+G+C + D + A+ +   M     
Sbjct: 399 KNVRKGYELLVEIKKRNIVISPYTYG-------TAVKGMCSSGDLDGAYNIVKEMGASGC 451

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
             + + Y++LI  F +K     + R++ E+   G  PD   +++++  L   +KM +A  
Sbjct: 452 RPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARS 511

Query: 464 LLL 466
            LL
Sbjct: 512 FLL 514



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 158/341 (46%), Gaps = 26/341 (7%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ KA  IFD        G   +   +++++     + +   A++LLD ++ +       
Sbjct: 645 NMQKASSIFDEMVQA---GLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAV 701

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + +I  GY +     +A ++FD+MK  G  P    Y T++      N ++ A   +   
Sbjct: 702 TYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ET 760

Query: 147 REIGIQPCVASLNVLIKALCKNSGT----------MDAAFKIFREMPNRGCTPDSYTYGT 196
            E G     A  N LI  + K   T          MD +F  F +       P+  TY  
Sbjct: 761 NEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGK-------PNDVTYNI 813

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +I+ LC+ G +  AKELF  M+     PTV+TYTSL+NG  +     E   +F+E+ + G
Sbjct: 814 MIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAG 873

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-----RPNIVTYSTLLNGLCKEGK 311
           +EP+   YS +++   K G +++A+ LL  M +K       + +I T   LL+G  K G+
Sbjct: 874 IEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGE 933

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
           ++ A ++++ M      PD+    ++I+  C     + AA+
Sbjct: 934 MEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQRMAAD 974


>gi|296089005|emb|CBI38708.3| unnamed protein product [Vitis vinifera]
          Length = 466

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 232/454 (51%), Gaps = 20/454 (4%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           KW   +   Q+ Q+IR +K+   AL IF+ A +++ N +RH+   ++ MI+ L S+ +  
Sbjct: 4   KWPRFLIPTQLSQMIRTQKNPLTALKIFNEAKSKFPN-YRHNGPVYATMINVLGSSGRIA 62

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
              +++D++ ++ C+  + +F S+ + Y R     +A+ +F  + +F C     S+ T+L
Sbjct: 63  EMREVIDQMKQDSCECKDSVFSSVMKTYARAGMVDEAVSLFKTLPQFNCVNWTGSFNTLL 122

Query: 128 AILVEENQLKLAFR-FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
            ILV+E++L+ A R F  H     ++  + SLN+L+ ALC+ + + D A  +F+EM  + 
Sbjct: 123 RILVKESKLETACRLFLEHSCGWEVKSRIGSLNLLMDALCQINRS-DLALHVFQEMRYQC 181

Query: 187 CTPDSYTYGTLINGLCRLGKIYEAKEL----FKEMETKACSPTVVTYTSLINGLCQSKSV 242
           C+PD  +Y  L+ GLC  G++ EA  L    F  +  K     +  Y +L++ LC +  V
Sbjct: 182 CSPDKESYRILMRGLCEDGRLNEATHLLYSMFWRISQKGGGEDIAAYRTLLDALCDNGHV 241

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSL-MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301
           EEA+ +  ++  KG++        L +   C G    +   L+   + +   P++ +YS 
Sbjct: 242 EEALEILGKVLKKGLKAPKRCRGHLDLSYCCNGEDIERTKGLINEALIRGGVPSMASYSA 301

Query: 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG- 360
           +   L  E K+ EA ++LD M+ +G KP   +Y   I+  C   K   A  +L++M    
Sbjct: 302 MAIDLYSERKIGEANQVLDEMRDRGFKPSLSIYEAKIAALCRW-KSAFAVGYLEKMARQV 360

Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPN--RAFQVYLSMRNRSISVDSLTYSSLITCFC 418
           G   ++ T+S+       +V GLC  D     A  +   M  RS S    TY++LI   C
Sbjct: 361 GCVADKETYSI-------LVDGLC-CDGRFVEASGILERMLIRSSSPGVETYNTLIRGLC 412

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
             G  + +   ++E+V+ G LP    W +++ ++
Sbjct: 413 LMGRQYDAVIWLEEMVVQGKLPAVSVWDSLVASV 446



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 39/285 (13%)

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK----LAFRFYRHMREIGIQ 152
           +++R   A+ VF +M+   C P  +SY  ++  L E+ +L     L +  +  + + G  
Sbjct: 163 QINRSDLALHVFQEMRYQCCSPDKESYRILMRGLCEDGRLNEATHLLYSMFWRISQKGGG 222

Query: 153 PCVASLNVLIKALCKNS------------------------GTMDAAF-----------K 177
             +A+   L+ ALC N                         G +D ++            
Sbjct: 223 EDIAAYRTLLDALCDNGHVEEALEILGKVLKKGLKAPKRCRGHLDLSYCCNGEDIERTKG 282

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +  E   RG  P   +Y  +   L    KI EA ++  EM  +   P++  Y + I  LC
Sbjct: 283 LINEALIRGGVPSMASYSAMAIDLYSERKIGEANQVLDEMRDRGFKPSLSIYEAKIAALC 342

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + KS      L +  R  G   +  TYS L+DGLC  G   +A  +L+ M+ +   P + 
Sbjct: 343 RWKSAFAVGYLEKMARQVGCVADKETYSILVDGLCCDGRFVEASGILERMLIRSSSPGVE 402

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           TY+TL+ GLC  G+  +AV  L+ M +QG  P   ++  +++  C
Sbjct: 403 TYNTLIRGLCLMGRQYDAVIWLEEMVVQGKLPAVSVWDSLVASVC 447



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA---SLN 159
           +A +V D+M++ G +P+   Y   +A L             +  R++G   CVA   + +
Sbjct: 314 EANQVLDEMRDRGFKPSLSIYEAKIAALCRWKSAFAVGYLEKMARQVG---CVADKETYS 370

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           +L+  LC +   ++A+  I   M  R  +P   TY TLI GLC +G+ Y+A    +EM  
Sbjct: 371 ILVDGLCCDGRFVEAS-GILERMLIRSSSPGVETYNTLIRGLCLMGRQYDAVIWLEEMVV 429

Query: 220 KACSPTVVTYTSLINGLCQS 239
           +   P V  + SL+  +C +
Sbjct: 430 QGKLPAVSVWDSLVASVCSN 449


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 176/330 (53%), Gaps = 9/330 (2%)

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           +  AF  +  + ++G  P   +   LIK LC   G +  A     ++   G   +  +YG
Sbjct: 138 IPFAFSVFAKILKMGYNPNTITFTTLIKGLCL-KGQIHQALNFHDKLVALGFQFNQISYG 196

Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           TLI+GLC++G+   A +L + ++ K   P VV Y+++I+G+C+ K V +A  L+ EM SK
Sbjct: 197 TLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSK 256

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G+ PNV TYS+L+ G    G    A++L   MIS+  +P++ T++ L++  CK GK+  A
Sbjct: 257 GISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYA 316

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
           ++++D M  +G  P+   Y  I+   C   +  +A   L ++   GI PN  T+++    
Sbjct: 317 LKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTI---- 372

Query: 376 HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
              ++ GLC +     A  ++  +  +   +  +TY  +   FCKKG   +++ ++ ++ 
Sbjct: 373 ---LIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKME 429

Query: 435 LDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            +GC+PD  T+  +  +L+ + +   A +L
Sbjct: 430 ENGCIPDAKTYELIKLSLFKKGENDMAEKL 459



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 168/351 (47%), Gaps = 14/351 (3%)

Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI-----KALCKNSGTMDA 174
           P  Y+  ++  V +      F    H   I   PC +S   LI          ++  +D 
Sbjct: 14  PSYYVVPVSHFVPKKFPSFQFLKNTHFNFI---PCSSSKINLIPYSSTSTTFHSNNDVDD 70

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
           A  +F  +  +  TP +  +  ++  L +    +    L K+ME +   P +V    LIN
Sbjct: 71  AVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILIN 130

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
             CQ   +  A  +F ++   G  PN  T+++L+ GLC  G   QA+     +++   + 
Sbjct: 131 CFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQF 190

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N ++Y TL++GLCK G+ + A+++L R+  + ++P+  +Y  II   C      +A +  
Sbjct: 191 NQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLY 250

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
            EMV  GI+PN +T+S  I    TV  G  K     A  ++  M + +I  D  T++ L+
Sbjct: 251 SEMVSKGISPNVVTYSALISGFFTV--GKLK----DAVDLFNKMISENIKPDVYTFNILV 304

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             FCK G I  + ++VDE+   G  P+  T+S+++ AL    ++ +A  LL
Sbjct: 305 DVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALL 355



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 151/309 (48%), Gaps = 5/309 (1%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           IT   +++ +  +  +++AL   D   A    GF+ +  ++  +I  L    + R A DL
Sbjct: 158 ITFTTLIKGLCLKGQIHQALNFHDKLVAL---GFQFNQISYGTLIDGLCKVGETRAALDL 214

Query: 73  LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132
           L RV+ +       ++ +I  G  +     DA  ++ +M   G  P   +Y  +++    
Sbjct: 215 LRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFT 274

Query: 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192
             +LK A   +  M    I+P V + N+L+   CK SG +  A K+  EM +RG  P+  
Sbjct: 275 VGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCK-SGKISYALKLVDEMHDRGQPPNIV 333

Query: 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252
           TY ++++ LC+  ++ +A  L  +++ +   P + TYT LI+GLC S  +E+A  +FE++
Sbjct: 334 TYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDL 393

Query: 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312
             KG +  V TY  +  G CK G   +A  LL  M      P+  TY  +   L K+G+ 
Sbjct: 394 LVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGE- 452

Query: 313 QEAVEILDR 321
            +  E L R
Sbjct: 453 NDMAEKLHR 461



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 109/230 (47%), Gaps = 10/230 (4%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCD 82
           +K VN A   FD  +   + G   +  T+S +IS   +  + + A DL +++  E  K D
Sbjct: 240 DKHVNDA---FDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPD 296

Query: 83  I-TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141
           + T +I + +    G++     A+++ D+M + G  P   +Y ++L  L + +++  A  
Sbjct: 297 VYTFNILVDVFCKSGKISY---ALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVA 353

Query: 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201
               +++ GI+P + +  +LI  LC  SG ++ A  IF ++  +G      TY  +  G 
Sbjct: 354 LLTKLKDQGIRPNMHTYTILIDGLC-TSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGF 412

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           C+ G   EA  L  +ME   C P   TY  +   L +    + A +L  E
Sbjct: 413 CKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKLHRE 462


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 209/427 (48%), Gaps = 15/427 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAED-LLDRVNKEKC---DITEDIFLSICRGYGRVHR 100
           G + D  T + ++  L  AN+   A + LL R+++  C    ++  I L          R
Sbjct: 187 GLKMDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQR 246

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
            LD +++  K +   C P   +Y TV+     E +   A   +  M   G++P V + N+
Sbjct: 247 ALDLLQMMAK-QGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNL 305

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I ALCK +  MD A  + R+M   G  PD+ TY  +I+G   LG++ EA ++F+EM+ +
Sbjct: 306 IIDALCK-ARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKR 364

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P +VT  S +  LC+    +EA   F+ M +KG +P++F+Y +L+ G    GC +  
Sbjct: 365 GLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADM 424

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           + L   M S     N   ++ L++   K G + +A+ I   M+ QG+ PD   Y  +IS 
Sbjct: 425 IGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIST 484

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMR 399
           F  +G+  +A    ++MV  GI PN   +S       +++QG C      +A ++   M 
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAVYS-------SIIQGFCMHGGLVKAKELVSEMI 537

Query: 400 NRSIS-VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           N+ I   D + +SS+I   CK G +  +  I D     G  P   T+++++       KM
Sbjct: 538 NKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKM 597

Query: 459 RQAAELL 465
            +A ++L
Sbjct: 598 DKAFKIL 604



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 181/370 (48%), Gaps = 13/370 (3%)

Query: 101 PLDAMRVFDKM--KEFGCE---PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155
           P  A+ +F+++  +E G +   PT  +Y  ++       +  L    +  +   G++   
Sbjct: 133 PALALALFNRVCREEAGTQVAVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQ 192

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + N L+K LC  + T +A   +   M   GC P++ +Y  ++  LC       A +L +
Sbjct: 193 ITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQ 252

Query: 216 EMETK--ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
            M  +  ACSP VV Y+++I+G        +A  LF EM  +GV+P+V TY+ ++D LCK
Sbjct: 253 MMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCK 312

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                +A  +L+ M +   +P+ VTYS +++G    G+L+EA ++   MK +GL P+   
Sbjct: 313 ARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVT 372

Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ 393
               ++  C  G+ +EAA F D M   G  P+   +S    +H    +G C  D      
Sbjct: 373 CNSFLASLCKHGRSKEAAEFFDSMTAKGHKPD--IFSYCTLLHGYASEG-CFAD---MIG 426

Query: 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453
           ++ SM++  I+ +   ++ LI  + K+G +  +  I  E+   G  PD  T+S V++   
Sbjct: 427 LFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFS 486

Query: 454 DRRKMRQAAE 463
              ++  A E
Sbjct: 487 RMGRLTDAME 496



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 196/438 (44%), Gaps = 13/438 (2%)

Query: 30  KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +A   FDS TA+   G + D  ++  ++    S   F     L + +          +F 
Sbjct: 388 EAAEFFDSMTAK---GHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFT 444

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
            +   Y +     DAM +F +M++ G  P   +Y TV++      +L  A   +  M   
Sbjct: 445 ILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVAR 504

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCRLGKIY 208
           GIQP  A  + +I+  C + G + A  ++  EM N+G   PD   + ++IN LC+ G++ 
Sbjct: 505 GIQPNTAVYSSIIQGFCMHGGLVKAK-ELVSEMINKGIPRPDIVFFSSVINSLCKDGRVM 563

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           +A ++F         P V+T+ SLI+G C    +++A ++ + M   GVEP++ TY++L+
Sbjct: 564 DAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLL 623

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DG  K G  +  + L + M  K  +PN VTY  +L GL + G+   A +    M   G  
Sbjct: 624 DGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTT 683

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD- 387
               +YG I+   C         N  DE ++       +     I I NT++  + K   
Sbjct: 684 VTVSIYGIILGGLCR-------NNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQR 736

Query: 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
              A +++ ++    +  +  TY  +I    K G +  +  +   +   G +P     + 
Sbjct: 737 KEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNR 796

Query: 448 VMTALWDRRKMRQAAELL 465
           ++  L ++ ++ +A   L
Sbjct: 797 IIRMLLEKGEIAKAGNYL 814



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 185/405 (45%), Gaps = 13/405 (3%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V+ A++IF   T     G   D  T+S +IS      +   A +  +++          +
Sbjct: 456 VDDAMLIF---TEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAV 512

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           + SI +G+      + A  +  +M   G   P    + +V+  L ++ ++  A   +   
Sbjct: 513 YSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLA 572

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
            +IG +P V + N LI   C   G MD AFKI   M   G  PD  TY TL++G  + G+
Sbjct: 573 TDIGERPGVITFNSLIDGYCL-VGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGR 631

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           I +   LF+EM+ K   P  VTY  ++ GL ++     A + F EM   G    V  Y  
Sbjct: 632 INDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGI 691

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
           ++ GLC+  C+ +A+ L Q + +   + +I   +T++N + K  + +EA E+   +   G
Sbjct: 692 ILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASG 751

Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
           L P+   YG +I      G  ++A N    M   GI P         R+ N +++ L + 
Sbjct: 752 LLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGS-------RLLNRIIRMLLEK 804

Query: 387 DPNRAFQVYLS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                   YLS +  + I +++ T S +++ F +KG   +  +++
Sbjct: 805 GEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYQEDIKLL 849


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 10/302 (3%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           GI+P + + N LI   C  +G +D+   +  EM   GC PD  TY TLI+GLC+ G++ E
Sbjct: 5   GIEPNMVTYNSLIHGFCMTNG-VDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPE 63

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
              LF EM+ K C+P V+TY+ LI G C+   +  A  LF++M  +   P+V T+ +L++
Sbjct: 64  VNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVE 123

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G C  G    A  LL+ +++    P++ TY++L++G CK  ++ EA  +L RM     +P
Sbjct: 124 GYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQP 183

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388
           +  +Y  +I  FC  GK   A   L+EMV  G+ PN +T+        +++ G C T D 
Sbjct: 184 NVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITY-------RSLIGGFCGTGDL 236

Query: 389 NRAFQVYLSM-RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
             A ++   + RN +   D   Y  ++   C+ G +  +  +++ +   G  P    + A
Sbjct: 237 EEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVA 296

Query: 448 VM 449
           ++
Sbjct: 297 LI 298



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 148/295 (50%), Gaps = 2/295 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   +  T++ +I      N       L++ +    C    + + ++  G  +  R  + 
Sbjct: 5   GIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEV 64

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R+F +MK   C P   +Y  ++    + +++ +A   +  M +    P V +   L++ 
Sbjct: 65  NRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEG 124

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C N+G +D A ++  E+    C+PD YTY +L++G C++ ++ EA  + K M    C P
Sbjct: 125 YC-NAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQP 183

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV YT+LI+  C +     A +L EEM   GV+PN  TY SL+ G C  G   +A ++L
Sbjct: 184 NVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKML 243

Query: 285 QMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           + +    + + ++  Y  +++GLC+ G++  A+E+L+ +K  G  P   +Y  +I
Sbjct: 244 ERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALI 298



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 125/243 (51%), Gaps = 8/243 (3%)

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P +VTY SLI+G C +  V+  + L EEM + G  P++ TY++L+DGLCK G   +   L
Sbjct: 8   PNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNRL 67

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
              M +K   P+++TYS L+ G CK  ++  A  + D M  Q   PD   +  ++  +C+
Sbjct: 68  FGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCN 127

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRS 402
            G   +A   L+E+V    +P+  T++       ++V G CK      A +V   M    
Sbjct: 128 AGLVDDAERLLEEIVASDCSPDVYTYT-------SLVDGFCKVKRMVEAHRVLKRMAKGE 180

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              + + Y++LI  FC  G    + ++++E+V +G  P+  T+ +++        + +A 
Sbjct: 181 CQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAH 240

Query: 463 ELL 465
           ++L
Sbjct: 241 KML 243



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 111/265 (41%), Gaps = 19/265 (7%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +N A  +FD    + A     D  TF  ++    +A     AE LL+ +    C      
Sbjct: 96  INMACTLFDDMLKQAA---LPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYT 152

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + S+  G+ +V R ++A RV  +M +  C+P    Y  ++       +  +A++    M 
Sbjct: 153 YTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMV 212

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCRLGK 206
             G+QP   +   LI   C  +G ++ A K+   +  N  C  D + Y  +++GLCR G+
Sbjct: 213 GNGVQPNAITYRSLIGGFC-GTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGR 271

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
           +  A EL + ++     P    Y +LI G              E   S+   PN   Y +
Sbjct: 272 MSAALELLEAIKQSGTPPRHDIYVALIRG--------------EMTLSRKGRPNAKVYEA 317

Query: 267 LMDGLCKGGCSSQAMELLQMMISKR 291
           ++  L + G   +A  L   ++  +
Sbjct: 318 VIQELAREGRHEKANALSDELLGNK 342



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 14/148 (9%)

Query: 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQ 381
           M + G++P+   Y  +I  FC           ++EM   G  P+       I  +NT++ 
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPD-------INTYNTLID 53

Query: 382 GLCKT----DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
           GLCKT    + NR F     M+ +  + D +TYS LI  FCK   I+ +  + D+++   
Sbjct: 54  GLCKTGRVPEVNRLFG---EMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQA 110

Query: 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465
            LPD  T+  ++    +   +  A  LL
Sbjct: 111 ALPDVVTFPTLVEGYCNAGLVDDAERLL 138


>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g22960, mitochondrial; Flags: Precursor
 gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 718

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 238/496 (47%), Gaps = 51/496 (10%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL+++R  + +NKA  ++++      +G      TF+ M+     A      + +   + 
Sbjct: 209 VLKVLRDSRMMNKASAVYETMIE---HGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMK 265

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +   + +E  +  +  G+ +  +  +A R    M+  G   TP S+  ++    ++    
Sbjct: 266 RRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFD 325

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A+     M   GI P  ++ N+ I ALC + G +D A    RE+ +    PD  +Y TL
Sbjct: 326 DAWGVTDEMLNAGIYPTTSTYNIYICALC-DFGRIDDA----RELLSSMAAPDVVSYNTL 380

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++G  ++GK  EA  LF ++      P++VTY +LI+GLC+S ++E A RL EEM ++ +
Sbjct: 381 MHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLI 440

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK--------------------------- 290
            P+V TY++L+ G  K G  S A E+   M+ K                           
Sbjct: 441 FPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFR 500

Query: 291 ---------RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
                     H P++  Y+  ++GLCK G L +A+E   ++   GL PD   Y  +I  +
Sbjct: 501 LHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGY 560

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
            + G+++ A N  DEM+   + P+ +T+ + I  H    +        +AFQ    M+ R
Sbjct: 561 LENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGR------LEQAFQYSTEMKKR 614

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  + +T+++L+   CK G+I ++ R + ++  +G  P++ +++ +++   D  K  + 
Sbjct: 615 GVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEV 674

Query: 462 AELLLLELMNKCVEAE 477
            + L  E+++K +E +
Sbjct: 675 VK-LYKEMLDKEIEPD 689



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 185/387 (47%), Gaps = 18/387 (4%)

Query: 34  IFDSA---TAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +FD A   T E  N G     ST+++ I  L    +   A +LL  +     D+    + 
Sbjct: 323 LFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAAP--DVVS--YN 378

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  GY ++ + ++A  +FD ++     P+  +Y T++  L E   L+ A R    M   
Sbjct: 379 TLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQ 438

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            I P V +   L+K   KN G +  A +++ EM  +G  PD Y Y T   G  RLG   +
Sbjct: 439 LIFPDVITYTTLVKGFVKN-GNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDK 497

Query: 210 AKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           A  L +EM  T   +P +  Y   I+GLC+  ++ +A+    ++   G+ P+  TY++++
Sbjct: 498 AFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVI 557

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
            G  + G    A  L   M+ KR  P+++TY  L+ G  K G+L++A +    MK +G++
Sbjct: 558 RGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVR 617

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           P+   +  ++   C  G   EA  +L +M   GI PN+ ++++       ++   C  + 
Sbjct: 618 PNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTM-------LISKNCDFEK 670

Query: 389 -NRAFQVYLSMRNRSISVDSLTYSSLI 414
                ++Y  M ++ I  D  T+ +L 
Sbjct: 671 WEEVVKLYKEMLDKEIEPDGYTHRALF 697



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 155/306 (50%), Gaps = 14/306 (4%)

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           K    F + +R+ G  P V + N+++K L ++S  M+ A  ++  M   G  P   T+ T
Sbjct: 186 KFLLSFEKMIRK-GFLPSVRNCNIVLKVL-RDSRMMNKASAVYETMIEHGIMPTVITFNT 243

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +++   + G +    +++ EM+ +    + VTY  LING  ++  +EEA R   +MR  G
Sbjct: 244 MLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSG 303

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
                ++++ L++G CK G    A  +   M++    P   TY+  +  LC  G++ +A 
Sbjct: 304 FAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDAR 363

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           E+L  M      PD   Y  ++  +  +GK+ EA+   D++  G I P+ +T+       
Sbjct: 364 ELLSSMA----APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTY------- 412

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           NT++ GLC++ +   A ++   M  + I  D +TY++L+  F K G++  +  + DE++ 
Sbjct: 413 NTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLR 472

Query: 436 DGCLPD 441
            G  PD
Sbjct: 473 KGIKPD 478



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 1/196 (0%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
           G  +V   + A+    K+   G  P   +Y TV+   +E  Q K+A   Y  M    + P
Sbjct: 524 GLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYP 583

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V +  VLI    K +G ++ AF+   EM  RG  P+  T+  L+ G+C+ G I EA   
Sbjct: 584 SVITYFVLIYGHAK-AGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRY 642

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
             +ME +   P   +YT LI+  C  +  EE ++L++EM  K +EP+ +T+ +L   L K
Sbjct: 643 LCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEK 702

Query: 274 GGCSSQAMELLQMMIS 289
              S +   L ++++S
Sbjct: 703 DHESREVEFLERLLLS 718



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 12/241 (4%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCE----------PTPKSYITVLAILVEENQLKLAFRFY 143
           GY    R +  +R+ D  K F             P    Y   +  L +   L  A  F 
Sbjct: 479 GYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQ 538

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           R +  +G+ P   +   +I+   +N G    A  ++ EM  +   P   TY  LI G  +
Sbjct: 539 RKIFRVGLVPDHVTYTTVIRGYLEN-GQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAK 597

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G++ +A +   EM+ +   P V+T+ +L+ G+C++ +++EA R   +M  +G+ PN ++
Sbjct: 598 AGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYS 657

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           Y+ L+   C      + ++L + M+ K   P+  T+  L   L K+ + +E VE L+R+ 
Sbjct: 658 YTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKDHESRE-VEFLERLL 716

Query: 324 L 324
           L
Sbjct: 717 L 717



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 61/286 (21%)

Query: 240 KSVEEAMRL-FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           KS+ E   L FE+M  KG  P+V   + ++  L      ++A  + + MI     P ++T
Sbjct: 181 KSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVIT 240

Query: 299 YSTLL-----------------------------------NGLCKEGKLQEAVEILDRMK 323
           ++T+L                                   NG  K GK++EA      M+
Sbjct: 241 FNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMR 300

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI-------RI- 375
             G       +  +I  +C  G + +A    DEM+  GI P   T++++I       RI 
Sbjct: 301 RSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRID 360

Query: 376 ----------------HNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFC 418
                           +NT++ G  K      A  ++  +R   I    +TY++LI   C
Sbjct: 361 DARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLC 420

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           + G++  + R+ +E+      PD  T++ ++        +  A E+
Sbjct: 421 ESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEV 466


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 189/377 (50%), Gaps = 15/377 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           D +  F +M      P+   +  +L+ LV+          +  +   GI+P + SL++LI
Sbjct: 54  DLVSSFHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILI 113

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              C + G M  AF IF ++   G  P++ T  TL+ G C   K+ EA      +     
Sbjct: 114 NCYC-HLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGF 172

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
               V+Y +LINGLC+      A+++  ++  K V  +V  YS+++DGLCK    + A E
Sbjct: 173 HFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYE 232

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   MI+KR  P +VT ++L+ G C  G+ +EA  +L  M L+ + PD   +  ++   C
Sbjct: 233 LYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALC 292

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHI-------------RIHNTVVQGLCKTD-P 388
             GK +EA + +  M+  G+ P+ +T+S  +              +++ V+ G CK    
Sbjct: 293 KEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMV 352

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
           ++A  ++  MR R I+ D++TY+SLI   CK G I  +  +VDE+   G   D  T++++
Sbjct: 353 DKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSL 412

Query: 449 MTALWDRRKMRQAAELL 465
           + AL     + +A  L+
Sbjct: 413 IDALCKNHHVDKAIALV 429



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 193/418 (46%), Gaps = 64/418 (15%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  +F K+ + G  P   +  T++      +++K A  F+ H+  +G      S   LI 
Sbjct: 125 AFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLIN 184

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK  G   AA ++ R++  +  + D   Y T+I+GLC+   + +A EL+ EM TK  S
Sbjct: 185 GLCK-IGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRIS 243

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           PTVVT  SLI G C     +EA  L  EM  K + P+V+T++ L+D LCK G   +A   
Sbjct: 244 PTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSG 303

Query: 284 LQMMISKRHRPNIVTYSTLL--------------------NGLCKEGKLQEAVEILDRMK 323
           + +M+ +   P++VTYS+L+                    NG CK   + +A+ +   M+
Sbjct: 304 IAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSLFYEMR 363

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
            + + PD   Y  +I   C  G+   A   +DEM   G   + +T+       N+++  L
Sbjct: 364 CRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITY-------NSLIDAL 416

Query: 384 CKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL------- 435
           CK    ++A  +   ++++ I +D  TY+ LI   CK+G +  +  I  +L++       
Sbjct: 417 CKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTV 476

Query: 436 ----------------------------DGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
                                       +GC+PD  T   ++ AL++  K  +A +LL
Sbjct: 477 WTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFENDKNERAEKLL 534



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 170/367 (46%), Gaps = 28/367 (7%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A GF  +  ++  +I+ L    + R A  +L ++  +       ++ +I  G  +     
Sbjct: 169 ALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVN 228

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA  ++ +M      PT  +  +++       Q K AF   R M    I P V + N+L+
Sbjct: 229 DAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILV 288

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL--------------------INGLC 202
            ALCK  G +  A      M   G  PD  TY +L                    ING C
Sbjct: 289 DALCK-EGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFC 347

Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
           ++  + +A  LF EM  +  +P  VTY SLI+GLC+S  +  A  L +EMR  G   ++ 
Sbjct: 348 KIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADII 407

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY+SL+D LCK     +A+ L++ +  +  + ++ TY+ L++GLCK+G+L++A  I   +
Sbjct: 408 TYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDL 467

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
            ++G       Y  +I+  C  G   EA   L +M   G  P+ +T         T+++ 
Sbjct: 468 LIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCE-------TIIRA 520

Query: 383 LCKTDPN 389
           L + D N
Sbjct: 521 LFENDKN 527



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 161/334 (48%), Gaps = 21/334 (6%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D   +S +I  L        A +L   +  ++   T     S+  GY  V +  +A  + 
Sbjct: 210 DVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLL 269

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN--------- 159
            +M      P   ++  ++  L +E ++K A      M + G+ P V + +         
Sbjct: 270 REMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLV 329

Query: 160 -----------VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
                      ++I   CK    +D A  +F EM  R   PD+ TY +LI+GLC+ G+I 
Sbjct: 330 NEVNKAKHVYSIVINGFCKIK-MVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRIS 388

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
            A EL  EM        ++TY SLI+ LC++  V++A+ L ++++ +G++ +++TY+ L+
Sbjct: 389 YAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILI 448

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
           DGLCK G    A  + Q ++ K +   + TY+ ++NGLC EG L EA  +L +M+  G  
Sbjct: 449 DGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCV 508

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           PDA     II    +  K + A   L EM+  G+
Sbjct: 509 PDAVTCETIIRALFENDKNERAEKLLREMIARGL 542


>gi|15222997|ref|NP_172253.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180186|sp|Q9LQQ1.1|PPR20_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g07740, mitochondrial; Flags: Precursor
 gi|8439893|gb|AAF75079.1|AC007583_15 It contains PPR repeats PF|01535 [Arabidopsis thaliana]
 gi|14596021|gb|AAK68738.1| Unknown protein [Arabidopsis thaliana]
 gi|31376389|gb|AAP49521.1| At1g07730 [Arabidopsis thaliana]
 gi|51970836|dbj|BAD44110.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190050|gb|AEE28171.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 192/385 (49%), Gaps = 10/385 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GFRHD  ++S +I KL  +  F   + +L  V        E +F+ + + YG+      A
Sbjct: 76  GFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKA 135

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           + VF K+  F C  T +S  T++ +LV+  +L+ A  F+   +++ ++P   S N+LIK 
Sbjct: 136 IDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKG 195

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
              +    +AA K+F EM      P   TY +LI  LCR   + +AK L ++M  K   P
Sbjct: 196 FL-DKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRP 254

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VT+  L+ GLC      EA +L  +M  +G +P +  Y  LM  L K G   +A  LL
Sbjct: 255 NAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLL 314

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
             M  +R +P++V Y+ L+N LC E ++ EA  +L  M+++G KP+A  Y  +I  FC I
Sbjct: 315 GEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMIDGFCRI 374

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSI 403
             +    N L+ M+     P   T+         +V GL K  + + A  V   M  +++
Sbjct: 375 EDFDSGLNVLNAMLASRHCPTPATFV-------CMVAGLIKGGNLDHACFVLEVMGKKNL 427

Query: 404 SVDSLTYSSLITCFC-KKGDIHKSA 427
           S  S  + +L++  C K G ++  A
Sbjct: 428 SFGSGAWQNLLSDLCIKDGGVYCEA 452



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 178/376 (47%), Gaps = 11/376 (2%)

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           +  P +A+ +F + +E G      SY +++  L +        +  R +R   ++ C  S
Sbjct: 59  IEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVR-CRES 117

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L + +      +G++D A  +F ++ +  C     +  TLIN L   G++ +AK  F   
Sbjct: 118 LFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGA 177

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
           +     P  V++  LI G       E A ++F+EM    V+P+V TY+SL+  LC+    
Sbjct: 178 KDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDM 237

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
            +A  LL+ MI KR RPN VT+  L+ GLC +G+  EA +++  M+ +G KP    YG +
Sbjct: 238 GKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGIL 297

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYL 396
           +S     G+  EA   L EM    I P+       + I+N +V  LC +     A++V  
Sbjct: 298 MSDLGKRGRIDEAKLLLGEMKKRRIKPD-------VVIYNILVNHLCTECRVPEAYRVLT 350

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+ +    ++ TY  +I  FC+  D      +++ ++     P   T+  ++  L    
Sbjct: 351 EMQMKGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGG 410

Query: 457 KMRQAAELLLLELMNK 472
            +  A    +LE+M K
Sbjct: 411 NLDHAC--FVLEVMGK 424



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 134/275 (48%), Gaps = 9/275 (3%)

Query: 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           EA  LF + +         +Y+SLI  L +S++ +   ++   +R + V      +  L+
Sbjct: 64  EALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLI 123

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
               K G   +A+++   + S      I + +TL+N L   G+L++A    D  K   L+
Sbjct: 124 QHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLR 183

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           P++  +  +I  F D   ++ A    DEM+   + P+ +T+       N+++  LC+ D 
Sbjct: 184 PNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTY-------NSLIGFLCRNDD 236

Query: 389 -NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447
             +A  +   M  + I  +++T+  L+   C KG+ +++ +++ ++   GC P    +  
Sbjct: 237 MGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGI 296

Query: 448 VMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
           +M+ L  R ++ + A+LLL E+  + ++ +V I N
Sbjct: 297 LMSDLGKRGRIDE-AKLLLGEMKKRRIKPDVVIYN 330



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 145/364 (39%), Gaps = 50/364 (13%)

Query: 117 EPT------PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
           EPT      P   +  L  L E    + A   +   +E+G +    S + LI  L K S 
Sbjct: 37  EPTHKFTRKPWEEVPFLTDLKEIEDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAK-SR 95

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             DA  +I R +  R        +  LI    + G + +A ++F ++ +  C  T+ +  
Sbjct: 96  NFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLN 155

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +LIN L  +  +E+A   F+  +                                     
Sbjct: 156 TLINVLVDNGELEKAKSFFDGAKDM----------------------------------- 180

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
           R RPN V+++ L+ G   +   + A ++ D M    ++P    Y  +I   C      +A
Sbjct: 181 RLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKA 240

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLT 409
            + L++M+   I PN +T+ L       +++GLC K + N A ++   M  R      + 
Sbjct: 241 KSLLEDMIKKRIRPNAVTFGL-------LMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVN 293

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
           Y  L++   K+G I ++  ++ E+      PD   ++ ++  L    ++ +A  +L    
Sbjct: 294 YGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQ 353

Query: 470 MNKC 473
           M  C
Sbjct: 354 MKGC 357


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 215/480 (44%), Gaps = 70/480 (14%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRPL 102
           F  D   ++ +IS L  A+ F  A D L+R+    C    +T    L  C    ++ R  
Sbjct: 257 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGR-- 314

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
              RV + M   GC P+PK + +++           A++  + M + G  P     N+LI
Sbjct: 315 -CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 373

Query: 163 KALCKN----------------------------------------SGTMDAAFKIFREM 182
            ++C +                                        +G  + AF + REM
Sbjct: 374 GSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREM 433

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             +G  PD+ TY  ++N LC   K+  A  LF+EM+       V TYT +++  C++  +
Sbjct: 434 IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLI 493

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           E+A + F EMR  G  PNV TY++L+    K    S A EL + M+S+   PNIVTYS L
Sbjct: 494 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 553

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGL----------------YGKIISCFCDIGK 346
           ++G CK G++++A +I +RM      PD  +                YG ++  FC   +
Sbjct: 554 IDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHR 613

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
            +EA   LD M + G  PN++       +++ ++ GLCK    + A +V   M       
Sbjct: 614 VEEARKLLDAMSMEGCEPNQI-------VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPA 666

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              TYSSLI  + K      +++++ +++ + C P+   ++ ++  L    K  +A +L+
Sbjct: 667 TLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM 726



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 223/513 (43%), Gaps = 65/513 (12%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++VL  +     +  A ++F+        G   D  T+++M+     A     A    
Sbjct: 444 TYSKVLNYLCNASKMELAFLLFEEMKR---GGLVADVYTYTIMVDSFCKAGLIEQARKWF 500

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           + + +  C      + ++   Y +  +   A  +F+ M   GC P   +Y  ++    + 
Sbjct: 501 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 560

Query: 134 NQLKLAFR----------------FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
            Q++ A +                +++   +   +P V +   L+   CK S  ++ A K
Sbjct: 561 GQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCK-SHRVEEARK 619

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +   M   GC P+   Y  LI+GLC++GK+ EA+E+  EM       T+ TY+SLI+   
Sbjct: 620 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 679

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + K  + A ++  +M      PNV  Y+ ++DGLCK G + +A +L+QMM  K  +PN+V
Sbjct: 680 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVV 739

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+ +++G    GK++  +E+L+RM  +G+ P+   Y  +I   C  G    A N L+EM
Sbjct: 740 TYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEM 799

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCK--------------TDPNRAFQVYLSMRNRSI 403
                   +  W  H   +  V++G  K               D      VY  + +  I
Sbjct: 800 -------KQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLI 852

Query: 404 SVDSL----------------------TYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
               L                      TY+SLI   C    +  + ++  E+   G +P+
Sbjct: 853 KAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPE 912

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             ++ +++  L+   K+ +A  LLLL+ ++  V
Sbjct: 913 MQSFCSLIKGLFRNSKISEA--LLLLDFISHMV 943



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 211/478 (44%), Gaps = 20/478 (4%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           K + ++  K++ + V++++R     +  +  F  A  +   G++H    ++ ++  +V  
Sbjct: 80  KFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQI--GYKHTAPVYNALVDLIVRD 137

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
           +  +  E+ L ++  +  ++       + R + R      A+    ++K+F   P+  +Y
Sbjct: 138 DDEKVPEEFLQQIRDDDKEVFGQFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTY 197

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             ++   ++ ++L  A   +R M    ++    +L     +LCK  G    A  +   + 
Sbjct: 198 NCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCK-VGKWREALTL---VE 253

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
                PD+  Y  LI+GLC      EA +    M   +C P VVTY++L+ G    K + 
Sbjct: 254 TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLG 313

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
              R+   M  +G  P+   ++SL+   C  G  S A +LL+ M+   H P  V Y+ L+
Sbjct: 314 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 373

Query: 304 NGLCKEGK------LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
             +C +        L  A +    M   G+  +         C C  GKY++A + + EM
Sbjct: 374 GSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREM 433

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
           +  G  P+  T+S        V+  LC       AF ++  M+   +  D  TY+ ++  
Sbjct: 434 IGQGFIPDTSTYS-------KVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDS 486

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           FCK G I ++ +  +E+   GC P+  T++A++ A    +K+  A EL    L   C+
Sbjct: 487 FCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 544


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 215/480 (44%), Gaps = 70/480 (14%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRPL 102
           F  D   ++ +IS L  A+ F  A D L+R+    C    +T    L  C    ++ R  
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGR-- 355

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
              RV + M   GC P+PK + +++           A++  + M + G  P     N+LI
Sbjct: 356 -CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414

Query: 163 KALCKN----------------------------------------SGTMDAAFKIFREM 182
            ++C +                                        +G  + AF + REM
Sbjct: 415 GSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREM 474

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             +G  PD+ TY  ++N LC   K+  A  LF+EM+       V TYT +++  C++  +
Sbjct: 475 IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLI 534

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           E+A + F EMR  G  PNV TY++L+    K    S A EL + M+S+   PNIVTYS L
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 594

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGL----------------YGKIISCFCDIGK 346
           ++G CK G++++A +I +RM      PD  +                YG ++  FC   +
Sbjct: 595 IDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHR 654

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
            +EA   LD M + G  PN++       +++ ++ GLCK    + A +V   M       
Sbjct: 655 VEEARKLLDAMSMEGCEPNQI-------VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPA 707

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              TYSSLI  + K      +++++ +++ + C P+   ++ ++  L    K  +A +L+
Sbjct: 708 TLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM 767



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 223/513 (43%), Gaps = 65/513 (12%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++VL  +     +  A ++F+        G   D  T+++M+     A     A    
Sbjct: 485 TYSKVLNYLCNASKMELAFLLFEEMKR---GGLVADVYTYTIMVDSFCKAGLIEQARKWF 541

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           + + +  C      + ++   Y +  +   A  +F+ M   GC P   +Y  ++    + 
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 601

Query: 134 NQLKLAFR----------------FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
            Q++ A +                +++   +   +P V +   L+   CK S  ++ A K
Sbjct: 602 GQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCK-SHRVEEARK 660

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +   M   GC P+   Y  LI+GLC++GK+ EA+E+  EM       T+ TY+SLI+   
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 720

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + K  + A ++  +M      PNV  Y+ ++DGLCK G + +A +L+QMM  K  +PN+V
Sbjct: 721 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVV 780

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+ +++G    GK++  +E+L+RM  +G+ P+   Y  +I   C  G    A N L+EM
Sbjct: 781 TYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEM 840

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT--------------DPNRAFQVYLSMRNRSI 403
                   +  W  H   +  V++G  K               D      VY  + +  I
Sbjct: 841 -------KQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLI 893

Query: 404 SVDSL----------------------TYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
               L                      TY+SLI   C    +  + ++  E+   G +P+
Sbjct: 894 KAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPE 953

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
             ++ +++  L+   K+ +A  LLLL+ ++  V
Sbjct: 954 MQSFCSLIKGLFRNSKISEA--LLLLDFISHMV 984



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 212/478 (44%), Gaps = 20/478 (4%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           K + ++  K++ + V++++R     +  +  F  A  +   G++H    ++ ++  +V  
Sbjct: 121 KFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQI--GYKHTAPVYNALVDLIVRD 178

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
           +  +  E+ L ++  +  ++  +    + R + R      A+    ++K+F   P+  +Y
Sbjct: 179 DDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTY 238

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             ++   ++ ++L  A   +R M    ++    +L     +LCK     +A   +  E  
Sbjct: 239 NCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETE-- 296

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
                PD+  Y  LI+GLC      EA +    M   +C P VVTY++L+ G    K + 
Sbjct: 297 --NFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLG 354

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
              R+   M  +G  P+   ++SL+   C  G  S A +LL+ M+   H P  V Y+ L+
Sbjct: 355 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414

Query: 304 NGLCKEGK------LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
             +C +        L  A +    M   G+  +         C C  GKY++A + + EM
Sbjct: 415 GSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREM 474

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
           +  G  P+  T+S        V+  LC       AF ++  M+   +  D  TY+ ++  
Sbjct: 475 IGQGFIPDTSTYS-------KVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDS 527

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           FCK G I ++ +  +E+   GC P+  T++A++ A    +K+  A EL    L   C+
Sbjct: 528 FCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 214/444 (48%), Gaps = 10/444 (2%)

Query: 40  AEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99
           AE   GF H     + ++S L     F    + L RV  +   +   ++  +  GY R  
Sbjct: 113 AESRPGFDHSQFAIAYLVSLLFMDGNFALLSEFLGRVKSQGVALHRSLYRILLSGYVRAG 172

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           +    +  FD+M   GC      Y   + +LV+     L  ++Y      G      + +
Sbjct: 173 KFDSVIETFDEMVMSGCREFGVDYNRYIGVLVKNCCFDLVEKYYDMALAKGFCLTPFTYS 232

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
             I ALC+ S  ++   ++  +M   GC+PD +     I  LC+  ++ +A ++ ++M T
Sbjct: 233 RWISALCQ-SNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRT 291

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K  SP VVTY ++++GLC +K   EA+ L+EEM  + ++P+VF+  +L+ GLCK     +
Sbjct: 292 KGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDE 351

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A EL   M++     ++  Y+ L++G  + G + +A +I+  M+  G +PD   Y  +++
Sbjct: 352 AFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLN 411

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
            +C IG  ++A   + +M   G+ P+R +       +N +++GLCKT   ++AF      
Sbjct: 412 HYCTIGMMEKAEKLIRKMETSGVNPDRYS-------YNQLLKGLCKTHQLDKAFAFVSDH 464

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
                  D+++ + LI  FCK   +  +  +  E+   G   D  T+  ++  L+     
Sbjct: 465 MEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYY 524

Query: 459 RQAAELLLLELMNKCVEAEVDIQN 482
             A E L  +++N  ++  V++ N
Sbjct: 525 NLAEE-LFEQMLNAQIDPNVNLYN 547



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 208/454 (45%), Gaps = 50/454 (11%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY----GRV 98
           A GF     T+S  IS L  +N+    ++LL  ++K  C  + DI+   C  Y     + 
Sbjct: 221 AKGFCLTPFTYSRWISALCQSNRIELVQELLVDMDKLGC--SPDIW--ACNIYIYYLCKQ 276

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           +R  DA+++ +KM+  G  P   +Y TV++ L +  +   A   +  M +  ++P V S 
Sbjct: 277 NRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSC 336

Query: 159 NVLIKALCKN----------------------------------SGTMDAAFKIFREMPN 184
             LI  LCKN                                  +G++D A+KI   M  
Sbjct: 337 GALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRT 396

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
            GC PD  TY  L+N  C +G + +A++L ++MET   +P   +Y  L+ GLC++  +++
Sbjct: 397 NGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDK 456

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
           A     +    G   +  + + L+D  CK      A+EL + M  K  + + VTY TL+N
Sbjct: 457 AFAFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLIN 516

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
           GL   G    A E+ ++M    + P+  LY  ++   C +G ++ A      M+   ++P
Sbjct: 517 GLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSP 576

Query: 365 NRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
           + +T+       NT++  L K +    A  ++  MR R +  D+LT+  LI+    +G  
Sbjct: 577 DTVTF-------NTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKS 629

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
             +  + + ++ +G + D      +++ L  + K
Sbjct: 630 TLAYEVWEYMMENGIILDREVSERLISVLKSKNK 663


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY    E G    +   N+L+ +  K  G +  A  +F  +   
Sbjct: 107 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKE-GEIRLAQSVFDAITKW 165

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  +LG + E   L   M+     P V TY+ LINGLC+   +E+A
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDA 225

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             LFEEM   G+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 226 NELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G  + A  +   M+   I  +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLD 345

Query: 366 RLTWSLHIRIHNTVVQGLCK----TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
            + ++        ++ GLC+     D  +  +  LS+    +  +  TY+ +I  FCKKG
Sbjct: 346 DVAYT-------ALISGLCQEGRSVDAEKMLREMLSV---GLKPEIGTYTMIINEFCKKG 395

Query: 422 DIHKSARIVDELVLDGCLP 440
           D+   ++++ E+  DG +P
Sbjct: 396 DVWTGSKLLKEMQRDGYVP 414



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 156/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++G  P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  M+ A ++F EM + G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 152/275 (55%), Gaps = 8/275 (2%)

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
           Y +  L++   + G+I  A+ +F  +      P+VV++ +L+NG  +   ++E  RL   
Sbjct: 137 YFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196

Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
           M++ GV+P+V+TYS L++GLCK      A EL + M+     PN VT++TL++G CK G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371
           +  A+EI  +M  Q L PD   Y  +I   C  G  ++A + +DEM + G+ P+++T++ 
Sbjct: 257 VXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT- 315

Query: 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                 T++ G CK  D   A      M   +I +D + Y++LI+  C++G    + +++
Sbjct: 316 ------TLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKML 369

Query: 431 DELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            E++  G  P+ GT++ ++     +  +   ++LL
Sbjct: 370 REMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 137/284 (48%), Gaps = 9/284 (3%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E      + D Y +  LI      G + +A E ++  +        
Sbjct: 43  KGKGSASAVFAXJLETKGTQIS-DIYVFSGLIIAYLESGFLRDAIECYRLTKEHKFRVPF 101

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + K  +     +EE    G   +++ ++ LM    K G    A  +   
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDA 161

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+++TL+NG  K G L E   + + M+  G++PD   Y  +I+  C   K
Sbjct: 162 ITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK 221

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
            ++A    +EM+  G+ PN +T++       T++ G CK      A ++Y  M ++S+S 
Sbjct: 222 MEDANELFEEMLDNGLVPNGVTFT-------TLIDGHCKNGRVXLAMEIYKQMLSQSLSP 274

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           D +TY++LI   CKKGD+ ++  ++DE+ + G  PD+ T++ ++
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 36/264 (13%)

Query: 35  FDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94
           F    A  A+G + D  T+S++I+ L   ++                             
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKME--------------------------- 223

Query: 95  YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154
                   DA  +F++M + G  P   ++ T++    +  ++ LA   Y+ M    + P 
Sbjct: 224 --------DANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPD 275

Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214
           + + N LI  LCK  G +  A  +  EM  +G  PD  TY TLI+G C+ G +  A    
Sbjct: 276 LITYNTLIYGLCKK-GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYR 334

Query: 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
           K M  +      V YT+LI+GLCQ     +A ++  EM S G++P + TY+ +++  CK 
Sbjct: 335 KRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394

Query: 275 GCSSQAMELLQMMISKRHRPNIVT 298
           G      +LL+ M    + P++VT
Sbjct: 395 GDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 207/439 (47%), Gaps = 50/439 (11%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++ L R+ +  + AL +FD  T  Y  G+  D    S ++S    AN    +  LL    
Sbjct: 151 IVVLCRSGRQAD-ALQLFDQMTTHY--GYSPDARFLSFLVSSCTCANLLDASATLLS--- 204

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
                                           K  EFGC     +Y  +++ L+   ++ 
Sbjct: 205 --------------------------------KASEFGCRVEAYAYNKLMSSLIGRGRVH 232

Query: 138 -LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
            +   F R +++    P V S NV+IK +C+  G +  A ++   M   GC+PD+ T+  
Sbjct: 233 DVVALFERWIQDRVYSPDVWSFNVVIKGVCR-VGQVQKALELVERMNEFGCSPDTVTHNI 291

Query: 197 LINGLCRLGKIYEAKELFKEMETKA-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
           L++GLCR  ++    E+ + ++    C P VVT+TS+I+G C++  +E+AM ++ +M + 
Sbjct: 292 LVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 351

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
           G+ PN  TY+ L++G  K G    A+E+ Q M   R  P++VT+S+L++G C+ G+L +A
Sbjct: 352 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA 411

Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL-GGITPNRLTWSLHIR 374
           + I   M    ++P+   +  II   C   +  EA   L+E+ L   I P          
Sbjct: 412 LRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAF------- 464

Query: 375 IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           I+N V+  LCK    + A  +   M  +    D  TY+ LI  +C K  I ++     E+
Sbjct: 465 IYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 524

Query: 434 VLDGCLPDEGTWSAVMTAL 452
           V  GC PD  T +  ++ L
Sbjct: 525 VEAGCSPDSITVNCFISCL 543



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 160/326 (49%), Gaps = 14/326 (4%)

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCR 203
           H   + I P   S   +I  LC+ SG    A ++F +M    G +PD+     L++  C 
Sbjct: 134 HCSPLSITPSAHSCQQIIVVLCR-SGRQADALQLFDQMTTHYGYSPDARFLSFLVSS-CT 191

Query: 204 LGKIYEAKE-LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE-MRSKGVEPNV 261
              + +A   L  +     C      Y  L++ L     V + + LFE  ++ +   P+V
Sbjct: 192 CANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDV 251

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
           ++++ ++ G+C+ G   +A+EL++ M      P+ VT++ L++GLC+  ++    E+L R
Sbjct: 252 WSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRR 311

Query: 322 MKLQGL-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
           ++  G+  P+   +  +IS +C  GK ++A    ++MV  GI PN +T+       N ++
Sbjct: 312 LQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTY-------NVLI 364

Query: 381 QGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            G  K  D   A +VY  M       D +T+SSLI  +C+ G +  + RI  ++      
Sbjct: 365 NGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQ 424

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
           P+  T+S ++ +L  + +  +A  LL
Sbjct: 425 PNVYTFSIIIHSLCKQNRSDEAIGLL 450



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 3/277 (1%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRPLD 103
           G   D  T ++++  L   N+     ++L R+ ++  C      F S+  GY +  +  D
Sbjct: 281 GCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLED 340

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM V++ M   G  P   +Y  ++    +   L  A   Y+ M  +   P V + + LI 
Sbjct: 341 AMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLID 400

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-C 222
             C+  G +D A +I+ +M      P+ YT+  +I+ LC+  +  EA  L  E+  +   
Sbjct: 401 GYCR-CGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDI 459

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           +P    Y  +I+ LC+   V+EA  + + M  KG  P+ +TY+ L+ G C     S+A+ 
Sbjct: 460 APQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIM 519

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
               M+     P+ +T +  ++ L K G   E   ++
Sbjct: 520 FFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVM 556



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 2/236 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+ +IS    A +   A  + + +           +  +  GYG+V     A+ V+ +M
Sbjct: 324 TFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM 383

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
               C P   ++ +++       QL  A R +  M +  IQP V + +++I +LCK + +
Sbjct: 384 TRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRS 443

Query: 172 MDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
            D A  +  E+  R    P ++ Y  +I+ LC+ GK+ EA  + K ME K C P   TYT
Sbjct: 444 -DEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYT 502

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            LI G C    + EA+  F EM   G  P+  T +  +  L K G  ++   ++++
Sbjct: 503 ILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHVMRL 558



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 11/213 (5%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A+G   +  T++++I+          A ++  ++ + +C      F S+  GY R  +  
Sbjct: 350 ASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLD 409

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS----L 158
           DA+R++  M +   +P   ++  ++  L ++N+   A      + E+ ++P +A      
Sbjct: 410 DALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGL---LNELNLRPDIAPQAFIY 466

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N +I  LCK  G +D A  I + M  +GC PD YTY  LI G C   +I EA   F EM 
Sbjct: 467 NPVIDVLCK-CGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMV 525

Query: 219 TKACSPTVVTYTSLINGLCQS---KSVEEAMRL 248
              CSP  +T    I+ L ++     V+  MRL
Sbjct: 526 EAGCSPDSITVNCFISCLLKAGMPNEVDHVMRL 558


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 181/363 (49%), Gaps = 11/363 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+    +++E    P  ++   +L  L  E   +LA+R +  +      P V + N++I
Sbjct: 146 DAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQLP----APNVFTFNIMI 201

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCK  G +  A  +   M   GC+PD  TY +LI+G  + G++ E ++L  EM    C
Sbjct: 202 DFLCK-EGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGC 260

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P VVTY +L+N  C+   +E A   F EM+ +GV  NV T+S+ +D  CK G   +AM+
Sbjct: 261 RPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMK 320

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L   M  K  +PN VTY+ L++G CK G+L +A+ + + M  QG+  +   Y  ++   C
Sbjct: 321 LFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLC 380

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402
             GK  EA +    M   GI  N L ++  I  H          +  RA  +   M+++ 
Sbjct: 381 KEGKVAEAEDVFRLMERAGIRANELLYTTLIHGH------FVYKNSERALSLLSEMKDKG 434

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           + +D   Y +LI   C    + ++  +++++   G  P+   ++ +M A +  RK  +A 
Sbjct: 435 MELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAI 494

Query: 463 ELL 465
            LL
Sbjct: 495 ALL 497



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 197/414 (47%), Gaps = 9/414 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF++MI  L        A  LL R+    C      + S+  GYG+     +  ++  +M
Sbjct: 196 TFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEM 255

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  GC P   +Y  ++    +  +++ A+ ++  M+  G+   V + +  + A CKN G 
Sbjct: 256 RGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKN-GM 314

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +  A K+F +M  +G  P+  TY  L++G C+ G++ +A  L  EM  +     VVTYT 
Sbjct: 315 VREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTV 374

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++GLC+   V EA  +F  M   G+  N   Y++L+ G      S +A+ LL  M  K 
Sbjct: 375 LVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKG 434

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              ++  Y  L+ GLC   KL EA  +L++M   GLKP+  +Y  I+       K  EA 
Sbjct: 435 MELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAI 494

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
             L +M+  G  PN +T+         +V GLCK    + A   +  M +  +  +   Y
Sbjct: 495 ALLQKMMDSGFRPNIVTYC-------ALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAY 547

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           ++L+   CK G + K+  ++DE++  G   D    +++M     +  ++ A  L
Sbjct: 548 TALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFAL 601



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 166/356 (46%), Gaps = 40/356 (11%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TFS  +         R A  L  ++  +     E  +  +  G  +  R  DA+ + ++M
Sbjct: 301 TFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEM 360

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA--LCKNS 169
            + G      +Y  ++  L +E ++  A   +R M   GI+        LI    + KNS
Sbjct: 361 VQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNS 420

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME----------- 218
              + A  +  EM ++G   D   YG LI GLC L K+ EAK L  +M+           
Sbjct: 421 ---ERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIY 477

Query: 219 ---TKAC---------------------SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
                AC                      P +VTY +L++GLC++ S++EA+  F +M  
Sbjct: 478 TNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVD 537

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G+EPNV  Y++L+DGLCK G   +A+ LL  MI K    + V  ++L++G  K+G LQ+
Sbjct: 538 LGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQD 597

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           A  +  +M   GL+ D   Y   +  FC++   QEA   L EM+  GITP+ + ++
Sbjct: 598 AFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYN 653



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 1/306 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+++++  L    +   AED+   + +      E ++ ++  G+        A+ +  +M
Sbjct: 371 TYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEM 430

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           K+ G E     Y  ++  L    +L  A      M E G++P       ++ A C  +  
Sbjct: 431 KDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDA-CFKARK 489

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A  + ++M + G  P+  TY  L++GLC+ G I EA   F +M      P V  YT+
Sbjct: 490 ESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTA 549

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++GLC++  +++A+ L +EM  KG+  +    +SLMDG  K G    A  L   MI+  
Sbjct: 550 LVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSG 609

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            + ++  Y+  + G C    +QEA E+L  M   G+ PDA +Y  +I+    +G  +EAA
Sbjct: 610 LQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAA 669

Query: 352 NFLDEM 357
              +EM
Sbjct: 670 ILQNEM 675



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 145/286 (50%), Gaps = 14/286 (4%)

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
           P R   P      TL++ L   G + +A      +      P   T   ++  L + +S 
Sbjct: 122 PRRSALPS--VVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSS 179

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           E A RLFE++ +    PNVFT++ ++D LCK G  ++A  LL  M +    P++VTY++L
Sbjct: 180 ELAWRLFEQLPA----PNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSL 235

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           ++G  K G+L+E  +++  M+  G +PD   Y  +++CFC  G+ + A ++  EM   G+
Sbjct: 236 IDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGV 295

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
             N +T+S       T V   CK    R A +++  MR + +  + +TY+ L+   CK G
Sbjct: 296 MANVVTFS-------TFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAG 348

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            +  +  + +E+V  G   +  T++ ++  L    K+ +A ++  L
Sbjct: 349 RLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRL 394



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 137/280 (48%), Gaps = 3/280 (1%)

Query: 45  GFRHDNSTFSLMI-SKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           G R +   ++ +I    V  N  R A  LL  +  +  ++   ++ ++  G   + +  +
Sbjct: 399 GIRANELLYTTLIHGHFVYKNSER-ALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDE 457

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  + +KM E G +P    Y  ++    +  +   A    + M + G +P + +   L+ 
Sbjct: 458 AKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVD 517

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +G++D A   F +M + G  P+   Y  L++GLC+ G++ +A  L  EM  K  S
Sbjct: 518 GLCK-AGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMS 576

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
              V  TSL++G  +  ++++A  L  +M + G++ +++ Y+  + G C      +A E+
Sbjct: 577 LDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREV 636

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           L  MI     P+ V Y+ L+N   K G ++EA  + + M+
Sbjct: 637 LSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEME 676


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 207/423 (48%), Gaps = 45/423 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRPLD 103
           GF  +  T++L++    +      AE ++  + K K   + E +F ++  GY ++ R  D
Sbjct: 308 GFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMED 367

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A R+ ++M +                    ++L++    Y               N++I 
Sbjct: 368 AARLLNEMVD--------------------SRLQVNLFVY---------------NIMIN 392

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G M  A  I  EM   G  PD+Y+Y +L++G C+ G + +A E +  M     +
Sbjct: 393 GYCK-LGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFA 451

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            T +TY +L+ G C   S+++A+RL+  M  KG+ PN  + S+L+DG  K G + +A+ L
Sbjct: 452 ATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNL 511

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            +  +++    N  T++T++NGLCK  ++ EA E++D+MK     PD   Y  + S +C 
Sbjct: 512 WKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCK 571

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG-LCKTDPNRAFQVYLSMRNRS 402
           IG    A+  L+E+   G  P        I   N+++ G        +   +   M NR 
Sbjct: 572 IGDMDRASRILNELENLGFAPT-------IEFFNSLITGHFIAKQHGKVNDILFEMSNRG 624

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           +S +++ Y +LI  +CK+GD+H +  +  E++  G +P+    S++++  + + K  +A 
Sbjct: 625 LSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEAN 684

Query: 463 ELL 465
            +L
Sbjct: 685 LVL 687



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 181/364 (49%), Gaps = 10/364 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A++VFD+M+  GC  + +S  ++L  L +   L      +  M+  G  P   ++ ++ K
Sbjct: 192 ALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAK 251

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A CK  G +  A +   EM   G   +   Y  ++NG C +G+  +A+ +   +  +  S
Sbjct: 252 AYCKVKGVVH-ALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFS 310

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR-SKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           P +VTYT L+ G C  K++EEA  + +E+R +K +  +   + ++++G C+ G    A  
Sbjct: 311 PNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAAR 370

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           LL  M+  R + N+  Y+ ++NG CK G++ EA  IL  M   G++PD   Y  ++  +C
Sbjct: 371 LLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYC 430

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G   +A    + M+  G     LT+       N +++G C     + A +++  M  +
Sbjct: 431 KKGLMNKAFETYNTMLRNGFAATTLTY-------NALLKGFCSLGSIDDALRLWFLMLKK 483

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            I+ + ++ S+L+  F K G   K+  +  E +  G   +  T++ V+  L    +M +A
Sbjct: 484 GIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEA 543

Query: 462 AELL 465
            EL+
Sbjct: 544 EELV 547



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 187/384 (48%), Gaps = 11/384 (2%)

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150
           + + Y +V   + A+   ++M + G E    +Y  V+    E  Q   A R    +   G
Sbjct: 249 MAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRG 308

Query: 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREM-PNRGCTPDSYTYGTLINGLCRLGKIYE 209
             P + +  +L+K  C N   M+ A  + +E+  N+    D   +G +ING C++G++ +
Sbjct: 309 FSPNIVTYTLLVKGYC-NEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMED 367

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  L  EM        +  Y  +ING C+   + EA  +  EM   GV P+ ++Y+SL+D
Sbjct: 368 AARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVD 427

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
           G CK G  ++A E    M+        +TY+ LL G C  G + +A+ +   M  +G+ P
Sbjct: 428 GYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAP 487

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP- 388
           +      ++  F   GK ++A N   E +  G+  N  T+       NTV+ GLCK +  
Sbjct: 488 NEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTF-------NTVINGLCKIERM 540

Query: 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
             A ++   M+      D +TY +L + +CK GD+ +++RI++EL   G  P    ++++
Sbjct: 541 PEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSL 600

Query: 449 MTALWDRRKMRQAAELLLLELMNK 472
           +T  +  ++  +  + +L E+ N+
Sbjct: 601 ITGHFIAKQHGKVND-ILFEMSNR 623



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 202/478 (42%), Gaps = 68/478 (14%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D + F  +I+      +   A  LL+ +   +  +   ++  +  GY ++ R ++A  + 
Sbjct: 348 DEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNIL 407

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK- 167
            +M   G  P   SY +++    ++  +  AF  Y  M   G      + N L+K  C  
Sbjct: 408 HEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSL 467

Query: 168 ---------------------------------NSGTMDAAFKIFREMPNRGCTPDSYTY 194
                                             SG  + A  +++E   RG   ++ T+
Sbjct: 468 GSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTF 527

Query: 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254
            T+INGLC++ ++ EA+EL  +M+   C P ++TY +L +G C+   ++ A R+  E+ +
Sbjct: 528 NTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELEN 587

Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQE 314
            G  P +  ++SL+ G        +  ++L  M ++   PN V Y  L+ G CKEG L  
Sbjct: 588 LGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHT 647

Query: 315 AVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA------------------------ 350
           A  +   M  +GL P+  +   ++SCF   GK+ EA                        
Sbjct: 648 AYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIG 707

Query: 351 --ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
             ANF+D +  G     ++ W       N V+ GLCK      A  +   ++++    D+
Sbjct: 708 KVANFIDTVAGGNHHSAKIMW-------NIVIFGLCKLGRIEDAKNLLADLKDKGFVADN 760

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            TYSSLI      G +  +  + D ++  G  P+  T+++++  L    ++ +A  L 
Sbjct: 761 FTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLF 818



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 166/339 (48%), Gaps = 31/339 (9%)

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           AS ++L++AL  N+G +D A ++F EM   GC     +  +++N L + G +     +F+
Sbjct: 174 ASFDLLLRALA-NAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFE 232

Query: 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275
           +M+     P   T   +    C+ K V  A+   EEM   GVE N+  Y ++M+G C+ G
Sbjct: 233 QMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVG 292

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KLQGLKPDAGLY 334
            ++ A  +L  +  +   PNIVTY+ L+ G C E  ++EA  ++  + K + L  D  ++
Sbjct: 293 QTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVF 352

Query: 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR-------------------- 374
           G +I+ +C +G+ ++AA  L+EMV   +  N   +++ I                     
Sbjct: 353 GAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTG 412

Query: 375 --------IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
                    +N++V G CK    N+AF+ Y +M     +  +LTY++L+  FC  G I  
Sbjct: 413 VGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDD 472

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           + R+   ++  G  P+E + S ++   +   K  +A  L
Sbjct: 473 ALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNL 511



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 183/410 (44%), Gaps = 37/410 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A G   + +TF+ +I+ L    +   AE+L+D++ + +C      + ++  GY ++    
Sbjct: 517 ARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMD 576

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
            A R+ ++++  G  PT + + +++       Q          M   G+ P   +   LI
Sbjct: 577 RASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALI 636

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
              CK  G +  A+ ++ EM  +G  P+ +   +L++   R GK  EA  + + +     
Sbjct: 637 AGWCK-EGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDM 695

Query: 223 SPTV--------------------------VTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
            P +                          + +  +I GLC+   +E+A  L  +++ KG
Sbjct: 696 IPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKG 755

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
              + FTYSSL+ G    G    A +L   M+S    PNIVTY++L+ GLCK G+L  AV
Sbjct: 756 FVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAV 815

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
            +  ++  +G+ P+A  Y  +I   C  G   EA      M+  GI P   T+S+     
Sbjct: 816 SLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSI----- 870

Query: 377 NTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCF--CKKGDI 423
             ++ GLC       A ++   M   ++  + +TY +LI  +  C+  D+
Sbjct: 871 --LINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCESVDV 918



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 171/387 (44%), Gaps = 39/387 (10%)

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F ++  G  ++ R  +A  + DKMK++ C P   +Y T+ +   +   +  A R    + 
Sbjct: 527 FNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELE 586

Query: 148 EIGIQPCVASLNVLIKA--LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
            +G  P +   N LI    + K  G ++    I  EM NRG +P++  YG LI G C+ G
Sbjct: 587 NLGFAPTIEFFNSLITGHFIAKQHGKVN---DILFEMSNRGLSPNTVAYGALIAGWCKEG 643

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV---- 261
            ++ A  L+ EM  K   P +   +SL++   +    +EA  + + +    + P++    
Sbjct: 644 DLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPR 703

Query: 262 ----------------------FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
                                   ++ ++ GLCK G    A  LL  +  K    +  TY
Sbjct: 704 LEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTY 763

Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
           S+L++G    G +  A ++ D M   GL P+   Y  +I   C  G+   A +   ++  
Sbjct: 764 SSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWT 823

Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
            GI+PN +T+       NT++   CK      AF++   M    I     TYS LI   C
Sbjct: 824 KGISPNAITY-------NTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLC 876

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTW 445
            +G + ++ +++D+++ +   P+  T+
Sbjct: 877 TQGYMEEAIKLLDQMIENNVDPNYVTY 903



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 91/156 (58%)

Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
           C  SG +D AF +   M + G TP+  TY +LI GLC+ G++  A  LFK++ TK  SP 
Sbjct: 770 CSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPN 829

Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
            +TY +LI+  C+   + EA +L + M  +G+ P VFTYS L++GLC  G   +A++LL 
Sbjct: 830 AITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLD 889

Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
            MI     PN VTY TL+ G  +   +   +  LD+
Sbjct: 890 QMIENNVDPNYVTYWTLIQGYVRCESVDVPIMPLDQ 925


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 196/393 (49%), Gaps = 14/393 (3%)

Query: 79  EKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-----FGCEPTPKSYITVLAILVEE 133
           E+C      + ++  G  + +R  + + +FD M++      GCEP   SY TV+  L + 
Sbjct: 62  EECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKA 121

Query: 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193
            ++  A+ +++ MR +G  P V + + LI  LCK    +D A+ +  ++      P +  
Sbjct: 122 QRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCK-VDRVDEAYSLLMQLKGEDMVPRAMY 180

Query: 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
           Y  ++NG  R GK  E  EL   M+ K     ++ + ++++ L ++   E+A + FE + 
Sbjct: 181 YNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLL 240

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
             G +PNV TY+  + GLCK G   +A  +L  M+  +  P+++TYS++++G CK G++ 
Sbjct: 241 KSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMD 300

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
           +A ++  RM +    P    +  ++  F +  K +EA    ++MV  G  P   T+    
Sbjct: 301 KADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTY---- 356

Query: 374 RIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432
              N ++  +C  D    A ++Y  M+ +    D+ TY+ LI C C+   + ++   +D 
Sbjct: 357 ---NVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDV 413

Query: 433 LVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +  D  +P+     A++  L  + ++ +A  +L
Sbjct: 414 MEADNVVPNGAICHALVEVLCKQGEVDEACSVL 446



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 174/324 (53%), Gaps = 15/324 (4%)

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +I   CK +G +D AF++  EM  RG   D   + TLI GLCR G+I EA E FK M  +
Sbjct: 5   VINGFCK-AGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM-GE 62

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR-----SKGVEPNVFTYSSLMDGLCKGG 275
            CSP V+TY +++NGLC++  ++E + LF++M      S G EP+V +YS+++D LCK  
Sbjct: 63  ECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQ 122

Query: 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335
              +A E  + M +    PN+VTYS+L++GLCK  ++ EA  +L ++K + + P A  Y 
Sbjct: 123 RVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYN 182

Query: 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQV 394
            +++ F   GK  E    L  M   G   N + +       N ++  L K D   +A Q 
Sbjct: 183 AVVNGFKRQGKPSECLELLLHMKEKGFGINIIDF-------NAMLHALWKNDEQEKACQF 235

Query: 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
           +  +       + +TY+  +   CK G + ++ RI+ E+V     PD  T+S+++     
Sbjct: 236 FERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCK 295

Query: 455 RRKMRQAAELLLLELMNKCVEAEV 478
             +M +A ++    ++++C+   V
Sbjct: 296 AGRMDKADDVFTRMMVHECIPHPV 319



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 200/423 (47%), Gaps = 28/423 (6%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S +I  L   ++   A  LL ++  E        + ++  G+ R  +P + + +   M
Sbjct: 145 TYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHM 204

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           KE G       +  +L  L + ++ + A +F+  + + G +P V + NV +  LCK +G 
Sbjct: 205 KEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCK-AGK 263

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           +D A++I  EM     TPD  TY ++I+G C+ G++ +A ++F  M    C P  VT+ +
Sbjct: 264 VDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMT 323

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++G  + K   EA R+ E+M + G  P + TY+ LMD +C       A+E+   M  K+
Sbjct: 324 LLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKK 383

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+  TY+ L+  LC+  ++ EA E LD M+   + P+  +   ++   C  G+  EA 
Sbjct: 384 RQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEAC 443

Query: 352 NFLD-------------------EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRA 391
           + LD                   +MVL G+ P+  T+         V++ LC  D  + A
Sbjct: 444 SVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYV-------AVLRSLCGLDRVDSA 496

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
              +  M +R  +   +TY+ LI   C       + RI + +V  G  P   T   + + 
Sbjct: 497 IAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSC 556

Query: 452 LWD 454
           L D
Sbjct: 557 LRD 559



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 197/420 (46%), Gaps = 50/420 (11%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ ++  G+ +  +   A  + D+MKE G +     + T++  L  + ++  A   ++ M
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-----GCTPDSYTYGTLINGL 201
            E    P V + N ++  LCK +  +D   ++F +M  R     GC PD  +Y T+I+ L
Sbjct: 61  GE-ECSPNVITYNTVVNGLCK-ANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDAL 118

Query: 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
           C+  ++ +A E FK M    C+P VVTY+SLI+GLC+   V+EA  L  +++ + + P  
Sbjct: 119 CKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRA 178

Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISK------------------------------- 290
             Y+++++G  + G  S+ +ELL  M  K                               
Sbjct: 179 MYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFER 238

Query: 291 ----RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
                 +PN+VTY+  ++GLCK GK+ EA  IL  M    + PD   Y  II  FC  G+
Sbjct: 239 LLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGR 298

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISV 405
             +A +    M++    P+ +T+        T++ G  +   +R AF+V+  M N     
Sbjct: 299 MDKADDVFTRMMVHECIPHPVTFM-------TLLHGFSEHKKSREAFRVHEDMVNAGFIP 351

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              TY+ L+ C C    +  +  I  ++      PD  T++ ++  L   R++ +A E L
Sbjct: 352 GLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFL 411



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 199/428 (46%), Gaps = 27/428 (6%)

Query: 28  VNKALVIFDSATAEY--ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           +++ L +FD     Y  ++G   D  ++S +I  L  A +   A +   R+    C    
Sbjct: 84  IDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNV 143

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
             + S+  G  +V R  +A  +  ++K     P    Y  V+     + +         H
Sbjct: 144 VTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLH 203

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M+E G    +   N ++ AL KN    + A + F  +   G  P+  TY   ++GLC+ G
Sbjct: 204 MKEKGFGINIIDFNAMLHALWKND-EQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAG 262

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           K+ EA  +  EM     +P V+TY+S+I+G C++  +++A  +F  M      P+  T+ 
Sbjct: 263 KVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFM 322

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+ G  +   S +A  + + M++    P + TY+ L++ +C    ++ A+EI  +MK +
Sbjct: 323 TLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRK 382

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
             +PDA  Y  +I C C   +  EA  FLD M    + PN         I + +V+ LCK
Sbjct: 383 KRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGA-------ICHALVEVLCK 435

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             + + A  V          +D++         CK G+  ++  +++++VL G  PDE T
Sbjct: 436 QGEVDEACSV----------LDNVVE------ICKAGEPDEAVEVIEQMVLKGVRPDEAT 479

Query: 445 WSAVMTAL 452
           + AV+ +L
Sbjct: 480 YVAVLRSL 487



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 150/327 (45%), Gaps = 25/327 (7%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRP 101
           +G + +  T+++ +  L  A +   A  +L  + + K  +T D+  + SI  G+ +  R 
Sbjct: 242 SGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESK--VTPDVITYSSIIDGFCKAGRM 299

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A  VF +M    C P P +++T+L    E  + + AFR +  M   G  P + + NVL
Sbjct: 300 DKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVL 359

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           +  +C  + ++++A +I+ +M  +   PD+ TY  LI  LCR  ++ EAKE    ME   
Sbjct: 360 MDCVC-GADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADN 418

Query: 222 CSPTVVTYTSLINGLCQSKSVEEA-------------------MRLFEEMRSKGVEPNVF 262
             P      +L+  LC+   V+EA                   + + E+M  KGV P+  
Sbjct: 419 VVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEA 478

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           TY +++  LC       A+   + M S+   P +VTY+ L+   C      +A  I + M
Sbjct: 479 TYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAM 538

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQE 349
              G  P A     + SC  D G YQ+
Sbjct: 539 VAAGFTPQAQTMRTLSSCLRDAG-YQD 564


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 193/380 (50%), Gaps = 10/380 (2%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
              V  K+ + G  P+  +  T++  L  + Q+K A  F+  +   G Q    S   LI 
Sbjct: 361 GFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN 420

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +CK  G    A K+ R++  R   P+   Y T+I+ LC+   + EA  LF EM  K  S
Sbjct: 421 GVCK-IGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGIS 479

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VVTY++LI G C    ++EA+ L  EM  K + P+V TY+ L+D L K G   +A  +
Sbjct: 480 ADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSV 539

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+    +P++ TY+TL+NG     ++++A  + + M L G+ PD   Y  +I+ FC 
Sbjct: 540 LAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCK 599

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
                EA N   EM    + P+ +T+S       ++V GLCK+   +  + +   MR+R 
Sbjct: 600 SKMVDEALNLFKEMHQKNMVPDTVTYS-------SLVDGLCKSGRISYVWDLIDEMRDRG 652

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
              D +TY+SLI   CK G + K+  + +++   G  P+  T++ ++  L    +++ A 
Sbjct: 653 QPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQ 712

Query: 463 ELLLLELMNKCVEAEVDIQN 482
           E +  +L+ K    +V I N
Sbjct: 713 E-VFQDLLTKGYHLDVYIYN 731



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 205/422 (48%), Gaps = 9/422 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G+     T + +I  L    Q + A    D++  +   + +  + ++  G  ++     A
Sbjct: 372 GYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGA 431

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           +++  K+     +P  + Y T++  L +   +  A+  +  M   GI   V + + LI  
Sbjct: 432 IKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 491

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G +  A  +  EM  +   PD  TY  L++ L + GK+ EAK +   M      P
Sbjct: 492 FCI-VGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKP 550

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            V TY +L+NG      V++A  +F  M   GV P+V TY+ L++G CK     +A+ L 
Sbjct: 551 DVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLF 610

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M  K   P+ VTYS+L++GLCK G++    +++D M+ +G   D   Y  +I   C  
Sbjct: 611 KEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKN 670

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSI 403
           G   +A    ++M   GI PN  T+++       ++ GLCK    + A +V+  +  +  
Sbjct: 671 GHLDKAIALFNKMKDQGIRPNTFTFTI-------LLDGLCKGGRLKDAQEVFQDLLTKGY 723

Query: 404 SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
            +D   Y+ +I   CK+G + ++  ++ ++  +GC+P+  T+  ++ AL+ + +  +A +
Sbjct: 724 HLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEK 783

Query: 464 LL 465
           LL
Sbjct: 784 LL 785



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 178/335 (53%), Gaps = 4/335 (1%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V++A  +F   T +   G   D  T+S +I       + + A  LL+ +  +  +     
Sbjct: 463 VSEAYGLFSEMTVK---GISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRT 519

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           +  +    G+  +  +A  V   M +   +P   +Y T++   +   ++K A   +  M 
Sbjct: 520 YTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMS 579

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
            +G+ P V +  +LI   CK S  +D A  +F+EM  +   PD+ TY +L++GLC+ G+I
Sbjct: 580 LMGVTPDVHTYTILINGFCK-SKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRI 638

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
               +L  EM  +     V+TY SLI+GLC++  +++A+ LF +M+ +G+ PN FT++ L
Sbjct: 639 SYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTIL 698

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGLCKGG    A E+ Q +++K +  ++  Y+ ++ G CK+G L+EA+ +L +M+  G 
Sbjct: 699 LDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGC 758

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
            P+A  +  II+      +  +A   L +M+  G+
Sbjct: 759 IPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 225/475 (47%), Gaps = 44/475 (9%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           A GF+ +  +++ +I+ +      R A   L +++        +++ +I     +     
Sbjct: 91  AQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVS 150

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  +F +M   G      +Y T++       +LK A      M    I P V + N+L+
Sbjct: 151 EAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILV 210

Query: 163 KALCKN-------------------------SGTMDAAF---------KIFREMPNRGCT 188
            ALCK                          S  MD  F          +F  M   G T
Sbjct: 211 DALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVT 270

Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
           PD ++Y  +ING C++ ++ +A  LFKEM      P ++ +  +++   + K    A+ L
Sbjct: 271 PDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP-IIQFNKILDSFAKMKHYSTAVSL 329

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
              +  KG++P++FT + L++  C  G  +    +L  ++ + + P+ VT +TL+ GLC 
Sbjct: 330 SHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCL 389

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
           +G++++A+   D++  QG + +   Y  +I+  C IG  + A   L ++        RLT
Sbjct: 390 KGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKI------DGRLT 443

Query: 369 WSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
              ++ +++T++  LCK    + A+ ++  M  + IS D +TYS+LI  FC  G + ++ 
Sbjct: 444 KP-NVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAI 502

Query: 428 RIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            +++E+VL    PD  T++ ++ AL    K+++A  +L + ++  CV+ +V   N
Sbjct: 503 GLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAV-MLKACVKPDVFTYN 556



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 177/362 (48%), Gaps = 16/362 (4%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           ++ V  K+ + G  P   +  T++  L  + Q+K A  F+  +   G Q    S   LI 
Sbjct: 47  SLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN 106

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            +C+  G   AA K  R++  R   P+   Y T+I+ LC+   + EA  LF EM  K  S
Sbjct: 107 GVCR-IGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGIS 165

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             VVTY++LI G C    ++EA+ L   M  K + PNV TY+ L+D LCK G   +A  +
Sbjct: 166 ANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSV 225

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+    + N++TYSTL++G     ++++A  + + M L G+ PD   Y  +I+ FC 
Sbjct: 226 LAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCK 285

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR-- 401
           I +  +A N   EM+L    P        I   N ++    K    + +   +S+ +R  
Sbjct: 286 IKRVDKALNLFKEMILSRFPP--------IIQFNKILDSFAKM---KHYSTAVSLSHRLE 334

Query: 402 --SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR 459
              I  D  T + LI CFC  G I     ++ +++  G  P   T + ++  L  + +++
Sbjct: 335 LKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVK 394

Query: 460 QA 461
           +A
Sbjct: 395 KA 396



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 207/443 (46%), Gaps = 31/443 (6%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+++++  L    + + A+ +L  + K         + ++  GY  V+    A  VF+ M
Sbjct: 205 TYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAM 264

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G  P   SY  ++    +  ++  A   ++ M  +   P +   N ++ +  K    
Sbjct: 265 SLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMI-LSRFPPIIQFNKILDSFAKMK-H 322

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A  +   +  +G  PD +T   LIN  C +G+I     +  ++  +   P+ VT  +
Sbjct: 323 YSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNT 382

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           LI GLC    V++A+   +++ ++G + N  +Y++L++G+CK G +  A++LL+ +  + 
Sbjct: 383 LIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRL 442

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +PN+  YST+++ LCK   + EA  +   M ++G+  D   Y  +I  FC +GK +EA 
Sbjct: 443 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAI 502

Query: 352 NFLDEMVLGGITPNRLTWSL----------------------------HIRIHNTVVQG- 382
             L+EMVL  I P+  T+++                             +  +NT++ G 
Sbjct: 503 GLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGY 562

Query: 383 LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
           L   +  +A  V+ +M    ++ D  TY+ LI  FCK   + ++  +  E+     +PD 
Sbjct: 563 LLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDT 622

Query: 443 GTWSAVMTALWDRRKMRQAAELL 465
            T+S+++  L    ++    +L+
Sbjct: 623 VTYSSLVDGLCKSGRISYVWDLI 645



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 112/200 (56%), Gaps = 9/200 (4%)

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           ++ +L  ++ + + P+ VT +TL+ GLC +G+++EA+   D++  QG + +   Y  +I+
Sbjct: 47  SLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN 106

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSM 398
             C IG  + A  FL ++      PN       + ++NT++  LCK    + A+ ++  M
Sbjct: 107 GVCRIGDTRAAIKFLRKIDGRLAKPN-------VEMYNTIIDALCKYQLVSEAYGLFSEM 159

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             + IS + +TYS+LI  FC  G + ++  +++ +VL    P+  T++ ++ AL    K+
Sbjct: 160 TVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKV 219

Query: 459 RQAAELLLLELMNKCVEAEV 478
           ++A  +L + ++  CV++ V
Sbjct: 220 KEAKSVLAV-MLKACVKSNV 238


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 166/309 (53%), Gaps = 9/309 (2%)

Query: 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
           VL  L++    KL + FY  + E G    +   N+L+   CK    M  A  +F  +   
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIM-VAQSVFNAITKW 154

Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
           G  P   ++ TL+NG  RLG + E   L   M      P V TY+ LINGLC+   +++A
Sbjct: 155 GLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDA 214

Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
             +F+EM  KG+ PN  T+++L+DG CK G    AME+ + M+S+   P+++TY+TL+ G
Sbjct: 215 NEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYG 274

Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
           LCK+G L++A +++D M ++GLKPD   Y  +I   C  G  + A      M+   I  +
Sbjct: 275 LCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLD 334

Query: 366 RLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
            + ++        ++ GLC+ +    A +V   M +  +  D+ TY+ +I  FCKKGD+ 
Sbjct: 335 DVAYT-------ALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVW 387

Query: 425 KSARIVDEL 433
             ++++ E+
Sbjct: 388 TGSKLLKEM 396



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/254 (36%), Positives = 149/254 (58%), Gaps = 1/254 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VF+ + ++G  P+  S+ T++   +    +   FR    M   G+QP V + +VLI 
Sbjct: 144 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLIN 203

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM ++G  P+  T+ TLI+G C+ G++  A E++K+M +++  
Sbjct: 204 GLCKES-KMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLX 262

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEH 322

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+E +  +A ++L  M   GLKPD G Y  II+ FC 
Sbjct: 323 RKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCK 382

Query: 344 IGKYQEAANFLDEM 357
            G     +  L EM
Sbjct: 383 KGDVWTGSKLLKEM 396



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 178/356 (50%), Gaps = 21/356 (5%)

Query: 119 TPKSYITVLAILV----EENQLKLAFRFYRHMRE----IGIQPCVASLNVLIKALCKNSG 170
           T +S I V + L+    E   L+ A   YR  RE    +    C   L  L+K       
Sbjct: 50  TQRSDIYVFSGLITAYLESGFLRDAXECYRLTREHKFWVPFDTCRKVLEHLMKL-----K 104

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
                +  + E+   G     Y +  L++  C+ G I  A+ +F  +      P+VV++ 
Sbjct: 105 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFN 164

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
           +L+NG  +   ++E  RL   M + GV+P+V+TYS L++GLCK      A E+   M+ K
Sbjct: 165 TLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDK 224

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEA 350
              PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +I   C  G  ++A
Sbjct: 225 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQA 284

Query: 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409
            + +DEM + G+ P+++T++       T++ G CK  D   AF+    M    I +D + 
Sbjct: 285 HDLIDEMSMKGLKPDKITYT-------TLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVA 337

Query: 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           Y++LI+  C++     + +++ E++  G  PD GT++ ++     +  +   ++LL
Sbjct: 338 YTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLL 393



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 139/271 (51%), Gaps = 1/271 (0%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           F++++ +         A+ + + + K     +   F ++  GY R+    +  R+ + M 
Sbjct: 128 FNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMH 187

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
             G +P   +Y  ++  L +E+++  A   +  M + G+ P   +   LI   CKN G +
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKN-GRV 246

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232
           D A +I+++M ++   PD  TY TLI GLC+ G + +A +L  EM  K   P  +TYT+L
Sbjct: 247 DLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 306

Query: 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292
           I+G C+   +E A    + M  + +  +   Y++L+ GLC+      A ++L+ M+S   
Sbjct: 307 IDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGL 366

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
           +P+  TY+ ++N  CK+G +    ++L  M+
Sbjct: 367 KPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 142/305 (46%), Gaps = 19/305 (6%)

Query: 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
           K  G+  A F    E        D Y +  LI      G + +A E ++           
Sbjct: 32  KGKGSASAVFAAILETKGTQ-RSDIYVFSGLITAYLESGFLRDAXECYRLTREHKFWVPF 90

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
            T   ++  L + K  +     +EE+   G   +++ ++ LM   CK G    A  +   
Sbjct: 91  DTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNA 150

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
           +     RP++V+++TL+NG  + G + E   + + M   G++PD   Y  +I+  C   K
Sbjct: 151 ITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESK 210

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
             +A    DEM+  G+ PN +T++       T++ G CK    + A ++Y  M ++S+  
Sbjct: 211 MDDANEMFDEMLDKGLVPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLXP 263

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM----------TALWDR 455
           D +TY++LI   CKKGD+ ++  ++DE+ + G  PD+ T++ ++          TA   R
Sbjct: 264 DLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHR 323

Query: 456 RKMRQ 460
           ++M Q
Sbjct: 324 KRMIQ 328


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 220/460 (47%), Gaps = 49/460 (10%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G   D  T++ +++          A  LL R+ ++    T+  + ++   + R+     A
Sbjct: 238 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQA 297

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ-PCVASLNVLIK 163
            +V + M  +G EP  ++Y  +   L +  ++  AFR    M  +    P V + N L+ 
Sbjct: 298 TKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVD 357

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           A  K   + DA  ++  EM ++G  P   T+  ++  LC+ GK+ EA    +++  +  +
Sbjct: 358 ACFKWRCSSDA-LRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLA 416

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P V+TY +LI+  C++ +V +A  L +EM  KG++ + FT ++++  LCK      A EL
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEEL 476

Query: 284 LQ-----------------------------------MMISKRHRPNIVTYSTLLNGLCK 308
           L                                     MI ++  P+I TY+TL+ GLC+
Sbjct: 477 LHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCR 536

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
             +L+EA++ L+ +  +GL PD   Y  II  +C  G  + A  F ++MV     P+ +T
Sbjct: 537 MERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVT 596

Query: 369 WSLHIRIHNTVVQGLC---KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
                   NT++ GLC   K D  +A +++ S   +   VD +TY++LI   CK GD+  
Sbjct: 597 C-------NTLMNGLCLHGKLD--KALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDT 647

Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           +    D++ + G  PD  T++ V++AL +  +  +A  +L
Sbjct: 648 ALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNML 687



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 178/351 (50%), Gaps = 10/351 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+     M+ FG  P   +Y T+L     +  L  A      M+  GI P   + N L+
Sbjct: 226 DALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLV 285

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            A  +  G +  A K+   M   G  PD  TY  L  GLC+ GK+ EA  L  EME  + 
Sbjct: 286 SAFAR-LGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLST 344

Query: 223 S-PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
           + P VVTY +L++   + +   +A+RL EEMR KGV+P + T++ ++  LCK G   +A+
Sbjct: 345 ALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEAL 404

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
             L+ +  +   P+++TY+TL++  CK G + +A  ++D M  +GLK D      ++   
Sbjct: 405 GKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNL 464

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN 400
           C + +Y++A   L      G  P+ +++        TV+    K  +P  A +++  M  
Sbjct: 465 CKMKRYEDAEELLHSPPQRGFVPDEVSY-------GTVMAAYFKEYNPEPALRLWDQMIE 517

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
           R +     TY++LI   C+   + ++   ++ELV  G +PDE T++ ++ A
Sbjct: 518 RKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHA 568



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 125/518 (24%), Positives = 222/518 (42%), Gaps = 104/518 (20%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA---EDLLDRVNKEKCDI- 83
           + +A  + +S TA    GF  D  T++++   L  A +   A   +D ++R++    D+ 
Sbjct: 294 IKQATKVVESMTA---YGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVV 350

Query: 84  TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143
           T +  +  C  + R     DA+R+ ++M++ G +PT  ++  V+  L +E +L+ A    
Sbjct: 351 TYNTLVDACFKW-RCSS--DALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKL 407

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM--------------------- 182
             + E G+ P V + N LI A CK +G +  AF +  EM                     
Sbjct: 408 EKIAEEGLAPDVITYNTLIDAYCK-AGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCK 466

Query: 183 --------------PNRGCTPDSYTYGT-------------------------------- 196
                         P RG  PD  +YGT                                
Sbjct: 467 MKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSIST 526

Query: 197 ---LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
              LI GLCR+ ++ EA +   E+  K   P   TY  +I+  C+   +E A R   +M 
Sbjct: 527 YNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMV 586

Query: 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313
               +P+V T ++LM+GLC  G   +A++L +  + K  + +++TY+TL+  +CK G + 
Sbjct: 587 ENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVD 646

Query: 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373
            A+   D M+++GL+PDA  Y  ++S   + G+ +EA N L ++   G            
Sbjct: 647 TALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG------------ 694

Query: 374 RIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSL---------TYSSLITCFCKKGDIH 424
           ++  +    L K  P+ A +  +         +S          TY   +   C  G + 
Sbjct: 695 KLSQSFACPLLK--PSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLK 752

Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
           ++  ++DE++  G   D  T+  +M  L  R+K +  A
Sbjct: 753 EAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQKRQTHA 790



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 161/326 (49%), Gaps = 18/326 (5%)

Query: 147 REIGIQPCVASLNVLIKALCKNSGTM-DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           R  G++P + + N ++ AL ++  T+  A+  +FR +      P+ YT+  L++  C  G
Sbjct: 163 RRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKG 222

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + +A      M+    SP  VTY +L+N  C+   + EA  L   M+  G+ P   TY+
Sbjct: 223 TLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYN 282

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM-KL 324
           +L+    + G   QA ++++ M +    P++ TY+ L  GLC+ GK+ EA  + D M +L
Sbjct: 283 TLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERL 342

Query: 325 QGLKPDAGLYGKII-SCF---CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
               PD   Y  ++ +CF   C      +A   L+EM   G+ P  +T       HN VV
Sbjct: 343 STALPDVVTYNTLVDACFKWRCS----SDALRLLEEMRDKGVKPTLVT-------HNIVV 391

Query: 381 QGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
           + LCK      A      +    ++ D +TY++LI  +CK G++ K+  ++DE+V  G  
Sbjct: 392 KSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLK 451

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELL 465
            D  T + V+  L   ++   A ELL
Sbjct: 452 MDTFTLNTVLYNLCKMKRYEDAEELL 477


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 212/466 (45%), Gaps = 69/466 (14%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           +G   D   +  +I  L +      A  LLD +    C    + F  I  G   + R  +
Sbjct: 201 HGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLRE 260

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A R+ D+M   GC P   +Y  +L  L   +Q++ A      + E+     V   N +I 
Sbjct: 261 AARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELN----VVLFNTVI- 315

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             C   G +  A +++  M ++GC PD++TY  LI+GLC+LG++  A +L +EME K  +
Sbjct: 316 GRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFA 375

Query: 224 PTVVTYTSLI-----NGL------------------------------CQSKSVEEAMRL 248
           P++VTYT L+     NG+                              C+ + +++AMR 
Sbjct: 376 PSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRF 435

Query: 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
            +EM+S+G +P++ TY++++  LC      +A  L + ++ +    N +TY+TL++ L +
Sbjct: 436 MQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLR 495

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT 368
            G  Q+A+ + + M L G   D   Y  +I   C  G    +   L EM   GI PN ++
Sbjct: 496 NGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVS 555

Query: 369 WSL----------------------------HIRIHNTVVQGLCKTD-PNRAFQVYLSMR 399
           ++L                             I  +NT++ GLCK    + A  +   + 
Sbjct: 556 YNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLH 615

Query: 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
           N  +  D +TY+ LI+  CK   +H ++ +++  V  G  P+E TW
Sbjct: 616 NEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTW 661



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 200/424 (47%), Gaps = 46/424 (10%)

Query: 76  VNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
           V++++   T   F    R   R+ R  +A+ +   M   GC P    Y TV+  L  +  
Sbjct: 163 VHRDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGG 222

Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
           +  A      M  +G    V + N ++  LC   G +  A ++   M  RGC P++ TYG
Sbjct: 223 VNEAATLLDEMFLMGCSADVNTFNDIVHGLC-TLGRLREAARLVDRMMIRGCVPNAITYG 281

Query: 196 TLINGLCRL-------------------------------GKIYEAKELFKEMETKACSP 224
            L+ GLC                                 GK+ EA EL++ M +K C P
Sbjct: 282 FLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPP 341

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
              TY+ LI+GLC+   +  AM+L  EM  KG  P++ TY+ L+   C+ G       +L
Sbjct: 342 DAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAML 401

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           ++M  K    N+  Y+ ++  +CK+ ++ +A+  +  MK QG KPD   Y  II   C+ 
Sbjct: 402 EVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNN 461

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI- 403
            + +EA    + ++  G+  N +T+       NT++  L +   N ++Q  +S+ N  + 
Sbjct: 462 NQMEEAEYLFENLLHEGVVANAITY-------NTLIHALLR---NGSWQDAISLANDMVL 511

Query: 404 ---SVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460
              S+D ++Y+ LI   C+ G++ +S  ++ E+   G  P+  +++ +++ L   R++R 
Sbjct: 512 HGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRD 571

Query: 461 AAEL 464
           A EL
Sbjct: 572 ALEL 575



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 173/337 (51%), Gaps = 11/337 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE---KCDITEDIFL-SICRGYGRV 98
           + G   D  T+S++I  L    +   A  LL  +  +      +T  I L S CR     
Sbjct: 336 SKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCR----- 390

Query: 99  HRPLDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           +   D +R + + M + G     + Y  ++  + ++ ++  A RF + M+  G +P + +
Sbjct: 391 NGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICT 450

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
            N +I  LC N+  M+ A  +F  + + G   ++ TY TLI+ L R G   +A  L  +M
Sbjct: 451 YNTIIYHLCNNN-QMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDM 509

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
               CS  +V+Y  LI  LC+  +V+ ++ L  EM  KG++PN  +Y+ L+  LCK    
Sbjct: 510 VLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRV 569

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A+EL + M+++   P+IVTY+TL+NGLCK G +  A+ +L+++  + +  D   Y  +
Sbjct: 570 RDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNIL 629

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           IS  C      +A+  L+  V  GITPN  TW + ++
Sbjct: 630 ISWHCKARLLHDASMLLNRAVTSGITPNERTWGIMVQ 666



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 131/239 (54%), Gaps = 1/239 (0%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DAMR   +MK  G +P   +Y T++  L   NQ++ A   + ++   G+     + N LI
Sbjct: 431 DAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLI 490

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
            AL +N G+   A  +  +M   GC+ D  +Y  LI  LCR G +  +  L  EM  K  
Sbjct: 491 HALLRN-GSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGI 549

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            P  V+Y  LI+ LC+++ V +A+ L +EM ++ + P++ TY++L++GLCK G    A+ 
Sbjct: 550 KPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALN 609

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           LL+ + ++    +I+TY+ L++  CK   L +A  +L+R    G+ P+   +G ++  F
Sbjct: 610 LLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGIMVQNF 668



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 40/368 (10%)

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLG 205
               + P   S N ++ A  +     D    ++R M +R    P ++T+      LCRLG
Sbjct: 128 HRFAVSPSFRSYNTVLAAFARADCHTDV-LSLYRRMVHRDRVPPTTFTFSIAARALCRLG 186

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +  EA  + + M    C P  V Y ++I+ LC    V EA  L +EM   G   +V T++
Sbjct: 187 RADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFN 246

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC------------------ 307
            ++ GLC  G   +A  L+  M+ +   PN +TY  LL GLC                  
Sbjct: 247 DIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPEL 306

Query: 308 -------------KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
                         +GKL+EA E+ + M  +G  PDA  Y  +I   C +G+   A   L
Sbjct: 307 NVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLL 366

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLI 414
            EM   G  P+ +T++  I +H+    G+   D  RA    +S +  S++++   Y+ +I
Sbjct: 367 REMEDKGFAPSIVTYT--ILLHSFCRNGMW--DNIRAMLEVMSDKGLSMNLEG--YNGMI 420

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
              CK   +  + R + E+   G  PD  T++ ++  L +  +M + AE L   L+++ V
Sbjct: 421 CAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEE-AEYLFENLLHEGV 479

Query: 475 EAEVDIQN 482
            A     N
Sbjct: 480 VANAITYN 487



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 13/203 (6%)

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-GLKPDAGLYGKI 337
           +A+ LL+ +   R  P      +LL  L +      A+ +LD++  +  + P    Y  +
Sbjct: 86  RALFLLESLPPSRVPP---LRESLLIPLFRSLAPGRALHLLDQLPHRFAVSPSFRSYNTV 142

Query: 338 ISCFCDIGKYQEAANFLDEMVLGG-ITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVY 395
           ++ F     + +  +    MV    + P   T+S+  R        LC+    + A  + 
Sbjct: 143 LAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAAR-------ALCRLGRADEALTML 195

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
            SM       D++ Y ++I   C +G ++++A ++DE+ L GC  D  T++ ++  L   
Sbjct: 196 RSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTL 255

Query: 456 RKMRQAAELLLLELMNKCVEAEV 478
            ++R+AA L+   ++  CV   +
Sbjct: 256 GRLREAARLVDRMMIRGCVPNAI 278


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 216/481 (44%), Gaps = 71/481 (14%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRPL 102
           F  D   ++ +IS L  A+ F  A D L+R+    C    +T    L  C    ++ R  
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGR-- 355

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
              RV + M   GC P+PK + +++           A++  + M + G  P     N+LI
Sbjct: 356 -CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILI 414

Query: 163 KALCKN----------------------------------------SGTMDAAFKIFREM 182
            ++C +                                        +G  + AF + REM
Sbjct: 415 GSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREM 474

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             +G  PD+ TY  ++  LC   K+  A  LF+EM+       V TYT +++  C++  +
Sbjct: 475 IGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLI 534

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           E+A + F EMR  G  PNV TY++L+    K    S A EL + M+S+   PNIVTYS L
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 594

Query: 303 LNGLCKEGKLQEAVEILDRM-----------------KLQGLKPDAGLYGKIISCFCDIG 345
           ++G CK G++++A +I +RM                      +P+  +YG ++  FC + 
Sbjct: 595 IDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLH 654

Query: 346 KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
           + +EA   LD M + G  PN++       +++ ++ GLCK    + A +V   M      
Sbjct: 655 RVEEARKLLDAMSMEGCEPNQI-------VYDALIDGLCKVGKLDEAQEVKAEMSEHGFP 707

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
               TYSSLI  + K      +++++ +++ + C P+   ++ ++  L    K  +A +L
Sbjct: 708 ATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 767

Query: 465 L 465
           +
Sbjct: 768 M 768



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 234/526 (44%), Gaps = 110/526 (20%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGYG 96
             GF  D ST+S ++  L +A++   A  L + + +    +  D++       S C+  G
Sbjct: 476 GQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRG--GLVADVYTYTIMVDSFCKA-G 532

Query: 97  RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA 156
            + +   A + F++M+E GC P   +Y  ++   ++  ++  A   +  M   G  P + 
Sbjct: 533 LIEQ---ARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIV 589

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREM-----------------------PN--------- 184
           + + LI   CK +G M+ A +IF  M                       PN         
Sbjct: 590 TYSALIDGHCK-AGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLD 648

Query: 185 --------------------RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
                                GC P+   Y  LI+GLC++GK+ EA+E+  EM       
Sbjct: 649 GFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPA 708

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
           T+ TY+SLI+   + K  + A ++  +M      PNV  Y+ ++DGLCK G + +A +L+
Sbjct: 709 TLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM 768

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           QMM  K  +PN+VTY+ +++G  + GK++  +E+L+RM  +G+ P+   Y  +I   C  
Sbjct: 769 QMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKN 828

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----------------TDP 388
           G    A N L+EM        +  W  H   +  V++G  K                T P
Sbjct: 829 GALDVAHNLLEEM-------KQTHWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAP 881

Query: 389 N------------RAFQVYLSMR--------NRSISVDSLTYSSLITCFCKKGDIHKSAR 428
                        +A ++ +++R        + ++   S TY+SLI   C    + K+ R
Sbjct: 882 FLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFR 941

Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           +  E+   G +P+  T+ +++  L+   K+ +A  LLLL+ ++  V
Sbjct: 942 LFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEA--LLLLDFISHMV 985



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 215/478 (44%), Gaps = 20/478 (4%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           K + ++  K++ + V++++R  +  +  +  F  A  +   G++H +  ++ ++  +V  
Sbjct: 121 KFLRQFREKLSESLVIEVLRLIERPSAVISFFVWAGRQI--GYKHTSPVYNALVDLIVRD 178

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
           +  +  E+LL ++  +  ++  +    + R Y R      A+    ++K+F   P+  +Y
Sbjct: 179 DDEKVPEELLQQIRDDDKEVFGEFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTY 238

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             ++   ++ + L  A   +R M    ++    +L     +LCK  G    A  +   M 
Sbjct: 239 NCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCK-VGKWREALTL---ME 294

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
                PD+  Y  LI+GLC      EA +    M   +C P VVTY++L+ G    K + 
Sbjct: 295 TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLG 354

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
              R+   M  +G  P+   ++SL+   C  G  S A +LL+ M+   H P  V Y+ L+
Sbjct: 355 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILI 414

Query: 304 NGLCKEGK------LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
             +C +        L+ A +    M   G+  +         C C  GKY++A + + EM
Sbjct: 415 GSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREM 474

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
           +  G  P+  T+S        V+  LC       AF ++  M+   +  D  TY+ ++  
Sbjct: 475 IGQGFIPDTSTYS-------KVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDS 527

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           FCK G I ++ +  +E+   GC P+  T++A++ A    +K+  A EL    L   C+
Sbjct: 528 FCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 198/439 (45%), Gaps = 33/439 (7%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           +T   ++      K V+ A  +F++  +E   G   +  T+S +I     A Q   A  +
Sbjct: 554 VTYTALIHAYLKAKKVSYANELFETMLSE---GCLPNIVTYSALIDGHCKAGQMEKACQI 610

Query: 73  LDRV-------------------NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113
            +R+                   N E+ ++   I+ ++  G+ ++HR  +A ++ D M  
Sbjct: 611 FERMCGSKDVPDVDMYFKQYDDDNSERPNVV--IYGALLDGFCKLHRVEEARKLLDAMSM 668

Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
            GCEP    Y  ++  L +  +L  A      M E G    + + + LI    K     D
Sbjct: 669 EGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFK-VKRQD 727

Query: 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233
            A K+  +M    C P+   Y  +I+GLC++GK  EA +L + ME K C P VVTYT++I
Sbjct: 728 LASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI 787

Query: 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR 293
           +G  +   +E  + L E M SKGV PN  TY  L+D  CK G    A  LL+ M      
Sbjct: 788 DGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWP 847

Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANF 353
            +   Y  ++ G  KE    E++ +LD +      P   LY  ++       + + A   
Sbjct: 848 THAAGYRKVIEGFNKE--FIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRL 905

Query: 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSS 412
           L+E  +   +   + +S     +N++++ LC  +  ++AF+++  M  + +  +  T+ S
Sbjct: 906 LEE--VATFSATLVDYS---STYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCS 960

Query: 413 LITCFCKKGDIHKSARIVD 431
           LI    +   I ++  ++D
Sbjct: 961 LIKGLFRNSKISEALLLLD 979


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 210/417 (50%), Gaps = 13/417 (3%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRV-NKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVFD 109
           F+ +++ +     +    +L  R+ N E  +I+ D++    +   + R  +P  A+    
Sbjct: 88  FNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLG 147

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           KM + G EP   +  +++      N +K A      M ++GI+  V    +LI  LCKN 
Sbjct: 148 KMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNR 207

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             +  A ++ + M +RG +P+  TY +LI GLC+ G++ +A+    EM++K  +P V+T+
Sbjct: 208 LVV-PALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITF 266

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           ++LI+   +   + +   +++ M    ++PNVFTYSSL+ GLC      +A+++L +MIS
Sbjct: 267 SALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMIS 326

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   PN+VTYSTL NG  K  ++ + +++LD M  +G+  +      +I  +   GK   
Sbjct: 327 KGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDL 386

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVDSL 408
           A      M   G+ PN       IR +N V+ GL    +  +A   +  M+     +D +
Sbjct: 387 ALGVFGYMTSNGLIPN-------IRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDII 439

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TY+ +I   CK   + ++  +  +L      PD   ++ +M A  +R  MR  A+ L
Sbjct: 440 TYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYT-IMIAELNRAGMRTEADAL 495



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 149/306 (48%), Gaps = 1/306 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D    +++I  L       PA ++L R+           + S+  G  +  R  DA
Sbjct: 188 GIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADA 247

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R   +M      P   ++  ++    +  +L      Y+ M ++ I P V + + LI  
Sbjct: 248 ERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYG 307

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC ++  +D A K+   M ++GCTP+  TY TL NG  +  ++ +  +L  +M  +  + 
Sbjct: 308 LCMHN-RVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAA 366

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             V+  +LI G  Q+  ++ A+ +F  M S G+ PN+ +Y+ ++ GL   G   +A+   
Sbjct: 367 NTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRF 426

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M   R+  +I+TY+ +++G+CK   ++EA ++  ++K + ++PD   Y  +I+     
Sbjct: 427 EHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRA 486

Query: 345 GKYQEA 350
           G   EA
Sbjct: 487 GMRTEA 492



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 136/275 (49%), Gaps = 17/275 (6%)

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR-SKGVE--PNVF 262
           K  +A  LF  M      P++V +  ++  + + +  +  + L++ +  ++G+E  P+++
Sbjct: 65  KFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLY 124

Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           T + L++  C+    S A+  L  M+     P+IVT S+L+NG C    +++AV +  +M
Sbjct: 125 TCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQM 184

Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
           +  G+K D  +   +I   C       A   L  M   GI+PN +T+S       +++ G
Sbjct: 185 EKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYS-------SLITG 237

Query: 383 LCKT----DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC 438
           LCK+    D  R       M ++ I+ + +T+S+LI  + K+G + K   +   ++    
Sbjct: 238 LCKSGRLADAERRLH---EMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSI 294

Query: 439 LPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
            P+  T+S+++  L    ++ +A ++L L +   C
Sbjct: 295 DPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGC 329


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 190/367 (51%), Gaps = 11/367 (2%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           DA+ +F+++      P    +  +L  LV+           + M   GI+P + + N+LI
Sbjct: 69  DAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILI 128

Query: 163 KALCKNS---GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
              C+       +  AF    ++   G   D  +YGTLI+GLC++G+   A +L + ++ 
Sbjct: 129 YCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDG 188

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K      V Y ++I G+C+ K V +A  L+ EM SKG+ PNV TYS+L+ G    G    
Sbjct: 189 KLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKD 248

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A++L   +I +  +P+  T++ L++G CK+ K++E   +   M  QG+ PD   Y  ++ 
Sbjct: 249 AIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMD 308

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSM 398
            +C + +   A +  + M  GG+ P+       IR +N ++ G CK    ++A  ++  M
Sbjct: 309 GYCLVKEVNTAKSIFNTMAQGGVNPD-------IRSYNILINGFCKIKKVDKAMNLFNEM 361

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             ++I  + +TY+SLI    K G I  + ++VD++   G  P+  T+++++ AL+   ++
Sbjct: 362 HCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQV 421

Query: 459 RQAAELL 465
            +A  L+
Sbjct: 422 DKAIALI 428



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 202/431 (46%), Gaps = 36/431 (8%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           +++A +  D   A    GF  D  ++  +I  L    + R A DLL RV+ +   +   +
Sbjct: 141 IHQAFLFHDKLVAL---GFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVM 197

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           + ++  G  +     DA  ++ +M   G  P   +Y  +++      +LK A   +  + 
Sbjct: 198 YNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKII 257

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
              I+P   + N+L+   CK+   M     +F  M  +G  PD  TY +L++G C + ++
Sbjct: 258 LENIKPDGYTFNILVDGFCKDR-KMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEV 316

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
             AK +F  M     +P + +Y  LING C+ K V++AM LF EM  K + PNV TY+SL
Sbjct: 317 NTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSL 376

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DGL K G  S A++L+  M  +   PNI+TY+++++ L K  ++ +A+ ++ + K QG+
Sbjct: 377 IDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGI 436

Query: 328 KPD--------------------AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
           +P                        Y  +I  FC  G + EA + L +M      PN +
Sbjct: 437 QPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAV 496

Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427
           T+ + IR        L   + ++A +++  M  R +   S +Y       C    IH+S 
Sbjct: 497 TYEITIR------SLLDNNENDKAEKLFREMITRGLLNRSASYP------CSSMKIHQSL 544

Query: 428 RIVDELVLDGC 438
            +V     D C
Sbjct: 545 TMVQHTWCDSC 555



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 182/385 (47%), Gaps = 26/385 (6%)

Query: 25  EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT 84
           +K VN A   FD  +   + G   +  T+S +IS      + + A DL +++  E     
Sbjct: 208 DKHVNDA---FDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPD 264

Query: 85  EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYR 144
              F  +  G+ +  +  +   VF  M + G  P   +Y +++       ++  A   + 
Sbjct: 265 GYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFN 324

Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204
            M + G+ P + S N+LI   CK    +D A  +F EM  +   P+  TY +LI+GL + 
Sbjct: 325 TMAQGGVNPDIRSYNILINGFCK-IKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKS 383

Query: 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264
           G+I  A +L  +M  +   P ++TY S+I+ L ++  V++A+ L  + + +G++P+++TY
Sbjct: 384 GRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTY 443

Query: 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324
           + L+DGLCK                + +   + TY+ +++G CK+G   EA+ +L +MK 
Sbjct: 444 TILIDGLCK---------------VEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKD 488

Query: 325 QGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW---SLHIRIHNTVVQ 381
               P+A  Y   I    D  +  +A     EM+  G+     ++   S+ I    T+VQ
Sbjct: 489 SSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGLLNRSASYPCSSMKIHQSLTMVQ 548

Query: 382 GL----CKTDPNRAFQVYLSMRNRS 402
                 C   P +  ++ LS  N+S
Sbjct: 549 HTWCDSCSHQPKKDVRLLLSTDNKS 573



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 105/239 (43%), Gaps = 33/239 (13%)

Query: 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           N  +YSS             A+ L   ++ +   P    ++ +L  L K       + + 
Sbjct: 50  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLS 109

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIG----KYQEAANFLDEMVLGGITPNRLTWS----- 370
            +M+ +G+KP+      +I CFC +G    +  +A  F D++V  G   +++++      
Sbjct: 110 QKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHG 169

Query: 371 -----------------------LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVD 406
                                  L+  ++NTV+ G+CK    N AF +Y  M ++ IS +
Sbjct: 170 LCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPN 229

Query: 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +TYS+LI+ F   G +  +  + ++++L+   PD  T++ ++      RKM++   + 
Sbjct: 230 VVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVF 288


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 215/480 (44%), Gaps = 70/480 (14%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRPL 102
           F  D   ++ +IS L  A+ F  A D L+R+    C    +T    L  C    ++ R  
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGR-- 355

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
              RV + M   GC P+PK + +++           A++  + M + G  P     N+LI
Sbjct: 356 -CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414

Query: 163 KALCKN----------------------------------------SGTMDAAFKIFREM 182
            ++C +                                        +G  + AF + REM
Sbjct: 415 GSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREM 474

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
             +G  PD+ TY  ++N LC   K+  A  LF+EM+       V TYT +++  C++  +
Sbjct: 475 IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLI 534

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           E+A + F EMR  G  PNV TY++L+    K    S A EL + M+S+   PNIVTYS L
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSAL 594

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGL----------------YGKIISCFCDIGK 346
           ++G CK G++++A +I +RM      PD  +                YG ++  FC   +
Sbjct: 595 IDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHR 654

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISV 405
            +EA   LD M + G  PN++       +++ ++ GLCK    + A +V   M       
Sbjct: 655 VEEARKLLDAMSMEGCEPNQI-------VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPA 707

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              TYSSLI  + K      +++++ +++ + C P+   ++ ++  L    K  +A +L+
Sbjct: 708 TLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM 767



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 222/510 (43%), Gaps = 65/510 (12%)

Query: 14  TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL 73
           T ++VL  +     +  A ++F+        G   D  T+++M+     A     A    
Sbjct: 485 TYSKVLNYLCNASKMELAFLLFEEMKR---GGLVADVYTYTIMVDSFCKAGLIEQARKWF 541

Query: 74  DRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133
           + + +  C      + ++   Y +  +   A  +F+ M   GC P   +Y  ++    + 
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 601

Query: 134 NQLKLAFR----------------FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
            Q++ A +                +++   +   +P V +   L+   CK S  ++ A K
Sbjct: 602 GQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCK-SHRVEEARK 660

Query: 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237
           +   M   GC P+   Y  LI+GLC++GK+ EA+E+  EM       T+ TY+SLI+   
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 720

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV 297
           + K  + A ++  +M      PNV  Y+ ++DGLCK G + +A +L+QMM  K  +PN+V
Sbjct: 721 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVV 780

Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
           TY+ +++G    GK++  +E+L+RM  +G+ P+   Y  +I   C  G    A N L+EM
Sbjct: 781 TYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEM 840

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT--------------DPNRAFQVYLSMRNRSI 403
                   +  W  H   +  V++G  K               D      VY  + +  I
Sbjct: 841 -------KQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLI 893

Query: 404 SVDSL----------------------TYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441
               L                      TY+SLI   C    +  + ++  E+   G +P+
Sbjct: 894 KAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPE 953

Query: 442 EGTWSAVMTALWDRRKMRQAAELLLLELMN 471
             ++ +++  L+   K+ +A  LLLL+ ++
Sbjct: 954 MQSFCSLIKGLFRNSKISEA--LLLLDFIS 981



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 212/478 (44%), Gaps = 20/478 (4%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           K + ++  K++ + V++++R     +  +  F  A  +   G++H    ++ ++  +V  
Sbjct: 121 KFLRQFREKLSESLVIEVLRLIARPSAVISFFVWAGRQI--GYKHTAPVYNALVDLIVRD 178

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
           +  +  E+ L ++  +  ++  +    + R + R      A+    ++K+F   P+  +Y
Sbjct: 179 DDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTY 238

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             ++   ++ ++L  A   +R M    ++    +L     +LCK  G    A  +   + 
Sbjct: 239 NCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCK-VGKWREALTL---VE 294

Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
                PD+  Y  LI+GLC      EA +    M   +C P VVTY++L+ G    K + 
Sbjct: 295 TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLG 354

Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
              R+   M  +G  P+   ++SL+   C  G  S A +LL+ M+   H P  V Y+ L+
Sbjct: 355 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414

Query: 304 NGLCKEGK------LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357
             +C +        L  A +    M   G+  +         C C  GKY++A + + EM
Sbjct: 415 GSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREM 474

Query: 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITC 416
           +  G  P+  T+S        V+  LC       AF ++  M+   +  D  TY+ ++  
Sbjct: 475 IGQGFIPDTSTYS-------KVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDS 527

Query: 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
           FCK G I ++ +  +E+   GC P+  T++A++ A    +K+  A EL    L   C+
Sbjct: 528 FCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 205/430 (47%), Gaps = 57/430 (13%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           ++Q++ + K    A  +F +A  E     R D   FS +I+  + +   R A +      
Sbjct: 35  LIQIVVSRKGKGSASAVF-AAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTK 93

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE------PTPKSYITVLA-IL 130
           + K  +  D     CR   +V   L  ++ F  +  F  E      P    +  +L    
Sbjct: 94  EHKFRVPFDT----CR---KVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSF 146

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
           V+E +++LA   +  + +  ++P V S N L+    K  G +D  F++   M   G  PD
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIK-LGDLDEGFRLKNAMQASGVQPD 205

Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
            YTY  LINGLC+  K+ +A ELF EM      P  VT+T+LI+G C++  V+ AM +++
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           +M S+ + P++ TY++L+ GLCK G   QA +L+  M  K  +P+ +TY+TL++G CKEG
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEG 325

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
            L+ A E   RM  + ++ D   Y  +IS  C  G+  +A   L EM+  G+ P      
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP------ 379

Query: 371 LHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430
                                              +  TY+ +I  FCKKGD+   ++++
Sbjct: 380 -----------------------------------EIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 431 DELVLDGCLP 440
            E+  DGC+P
Sbjct: 405 KEMQRDGCMP 414



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 156/265 (58%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++   P+  S+ T++   ++   L   FR    M+  G+QP V + +VLI 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++F EM + G  P+  T+ TLI+G C+ G++  A E++K+M +++ S
Sbjct: 215 GLCKES-KMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   +++A  L +EM  KG++P+  TY++L+DG CK G    A E 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + V Y+ L++GLC+EG+  +A ++L  M   GLKP+ G Y  II+ FC 
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G     +  L EM   G  P+ +T
Sbjct: 394 KGDVWTGSKLLKEMQRDGCMPSVVT 418



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 202/429 (47%), Gaps = 42/429 (9%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM 105
           FRH   ++  MI  L +      A+ L+  V   K             G G       A 
Sbjct: 9   FRHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRK-------------GKG------SAS 49

Query: 106 RVFDKMKEFGCEPTPKSYITVLAILV----EENQLKLAFRFYR----HMREIGIQPCVAS 157
            VF  + E   + T +S I V + L+    E   L+ A   YR    H   +    C   
Sbjct: 50  AVFAAILE--TKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKV 107

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L  L+K            +  + E    G     Y +  L++   + G+I  A+ +F  +
Sbjct: 108 LEHLMKL-----KYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAI 162

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
              +  P+VV++ +L+NG  +   ++E  RL   M++ GV+P+V+TYS L++GLCK    
Sbjct: 163 TKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKM 222

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             A EL   M+     PN VT++TL++G CK G++  A+EI  +M  Q L PD   Y  +
Sbjct: 223 DDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396
           I   C  G  ++A + +DEM + G+ P+++T++       T++ G CK  D   AF+   
Sbjct: 283 IYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT-------TLIDGNCKEGDLETAFEYRK 335

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M   +I +D + Y++LI+  C++G    + +++ E++  G  P+ GT++ ++     + 
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 395

Query: 457 KMRQAAELL 465
            +   ++LL
Sbjct: 396 DVWTGSKLL 404


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 216/427 (50%), Gaps = 16/427 (3%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI-FLSICRGYGRVHRP 101
           A  F    +T +++++ L +  +FR AED+L ++  + C I+  + + +I   Y +  R 
Sbjct: 219 ARKFPLGVTTCNILLNSLCTNGEFRKAEDMLQKM--KSCHISNSVTYNTILHWYVKKGRF 276

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
             A+ V + M+    +    +Y  ++  L    +   AF   + MR+  + P   + N L
Sbjct: 277 KAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTL 336

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I    +  G ++ A  +F  M  +   P   TY T+I+G CR  +I +A  +  EM+   
Sbjct: 337 INGFFR-EGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITG 395

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
             P+ +TY++L+NG C+   +  A+ L E+++S+G+  N    + L+DG C+ G  S+A 
Sbjct: 396 VMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAK 455

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           ++L+ M      P+++TYS L+NG+C+  K+ E  EIL RM+  G+ P+  LY  +I  +
Sbjct: 456 QILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYY 515

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK---TDPNRAFQVYLSM 398
           C  G  +EA     ++   G+  N +       IHN ++    +         F+ Y+S 
Sbjct: 516 CKAGYVKEALKHFVDIYRRGLVANPV-------IHNALLHAFYREGMITEAEHFRQYMSR 568

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
            N  IS DS++++ +I  +C +G+I  +  + D++V  G  P+  T+  ++  L     +
Sbjct: 569 MN--ISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHL 626

Query: 459 RQAAELL 465
            QA + +
Sbjct: 627 VQARQFM 633



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 206/423 (48%), Gaps = 11/423 (2%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           D  T+++MI KL    +   A  LL R+ K+     E  + ++  G+ R  +   A  VF
Sbjct: 294 DVYTYNIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVF 353

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
           + M      P+  +Y T++       ++  A      M+  G+ P   + + L+   CK 
Sbjct: 354 NHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKV 413

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
           S  +  A  +  ++ +RG T +      LI+G C++G+I +AK++ K M      P V+T
Sbjct: 414 S-MLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVIT 472

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           Y++LING+C+   + E   +   M+  G+ PN   Y++L+   CK G   +A++    + 
Sbjct: 473 YSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIY 532

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +    N V ++ LL+   +EG + EA      M    +  D+  + +II  +C  G   
Sbjct: 533 RRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIV 592

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDS 407
            A +  D+MV  G +PN  T+         +++GLC+     +A Q    + +   ++D 
Sbjct: 593 GAFSVYDDMVRYGYSPNVCTY-------QNLLRGLCQGGHLVQARQFMSCLLDIPFAIDE 645

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            T+++L+   C+ G + ++  + ++++ + CLPD  T++ +++    + K+  A  L++L
Sbjct: 646 KTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPA--LVIL 703

Query: 468 ELM 470
           ++M
Sbjct: 704 QMM 706



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 184/365 (50%), Gaps = 12/365 (3%)

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           +F  + + Y +  + LDA      M + G + +P S  T+L  LVEE + K  + F R  
Sbjct: 158 VFELLVKAYVKERKVLDAAVAVLFMDDCGFKASPVSCNTILNALVEEGESKHVWLFLRES 217

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC-TPDSYTYGTLINGLCRLG 205
                   V + N+L+ +LC N G    A  + ++M  + C   +S TY T+++   + G
Sbjct: 218 LARKFPLGVTTCNILLNSLCTN-GEFRKAEDMLQKM--KSCHISNSVTYNTILHWYVKKG 274

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +   A  + ++ME  +    V TY  +I+ LC+ K    A  L + MR   + P+  TY+
Sbjct: 275 RFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYN 334

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L++G  + G  + A  +   M+ +   P++ TY+T+++G C+  ++ +A+ IL  M++ 
Sbjct: 335 TLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQIT 394

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           G+ P    Y  +++ +C +     A   ++++   GIT N+   ++       ++ G C+
Sbjct: 395 GVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTI-------LIDGFCQ 447

Query: 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
             + ++A Q+  SM    I  D +TYS+LI   C+   +H++  I+  +   G LP++  
Sbjct: 448 VGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVL 507

Query: 445 WSAVM 449
           ++ ++
Sbjct: 508 YTTLI 512



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 142/285 (49%), Gaps = 1/285 (0%)

Query: 45   GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
            G R DN T+ L+I  L        A   L+++  E       +F  +   +    +  +A
Sbjct: 816  GIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNA 875

Query: 105  MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            ++VF+ MK     P+ K++  ++  L+ +  L  + +    M ++G+QP       L+ A
Sbjct: 876  LQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNA 935

Query: 165  LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
             C+  G +D AF++  EM   G  P      ++I GLCR GK+ EA  +F  M      P
Sbjct: 936  KCR-VGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVP 994

Query: 225  TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            TV T+T+L++ LC+   + +A+ L   M    +  +V +Y+ L+ GLCK    S A++L 
Sbjct: 995  TVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLY 1054

Query: 285  QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
              M SK   PNI TY TL   +   G++Q   E+L+ ++ +GL P
Sbjct: 1055 GEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLEDIEERGLIP 1099



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 194/460 (42%), Gaps = 51/460 (11%)

Query: 46   FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DI-TEDIFLSICRGYGRVHRPL 102
            F  D  TF+ ++  +        A DL +++ K  C  DI T  I LS   G+ R  + L
Sbjct: 641  FAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLS---GFCRKGKIL 697

Query: 103  DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF---------------------- 140
             A+ +   M E G  P   +Y  +L  L+ E Q+K A                       
Sbjct: 698  PALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSL 757

Query: 141  --------------RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186
                          R    M +  + P  AS N+L+    K  G    +  +++ M  +G
Sbjct: 758  MNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKR-GQFSKSLYLYKYMVRKG 816

Query: 187  CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246
              PD+ TY  LI GL   G I  A +  ++M  +   P  + +  LI    +   +  A+
Sbjct: 817  IRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNAL 876

Query: 247  RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306
            ++F  M+   + P+  T+S++++GL + G    + ++L  M+    +PN   Y  L+N  
Sbjct: 877  QVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAK 936

Query: 307  CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366
            C+ G++  A  + + MK  G+ P       II   C  GK +EA      M+  G+ P  
Sbjct: 937  CRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTV 996

Query: 367  LTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK 425
             T++       T++  LCK +    A  +   M    + VD ++Y+ LIT  CK   I  
Sbjct: 997  ATFT-------TLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISD 1049

Query: 426  SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +  +  E+   G  P+  T+  +  A++   +++   ELL
Sbjct: 1050 ALDLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELL 1089



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 135/261 (51%), Gaps = 1/261 (0%)

Query: 104  AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
            A++  +KM   G  P    +  ++    E++++  A + +  M+ + + P   + + +I 
Sbjct: 840  AVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMIN 899

Query: 164  ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             L +  G +D + K+  EM   G  P+   Y  L+N  CR+G+I  A  L +EM+     
Sbjct: 900  GLIRK-GYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIV 958

Query: 224  PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
            P  V  +S+I GLC+   +EEA+ +F  M   G+ P V T+++LM  LCK    + A+ L
Sbjct: 959  PAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHL 1018

Query: 284  LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
             ++M   R R ++V+Y+ L+ GLCK+  + +A+++   MK +GL P+   Y  +      
Sbjct: 1019 KRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYS 1078

Query: 344  IGKYQEAANFLDEMVLGGITP 364
             G+ Q     L+++   G+ P
Sbjct: 1079 TGRVQNGEELLEDIEERGLIP 1099



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/441 (21%), Positives = 195/441 (44%), Gaps = 13/441 (2%)

Query: 26  KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85
           + ++KAL I          G      T+S +++     +   PA  L++ +      I +
Sbjct: 379 RRIDKALSILSEMQI---TGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINK 435

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +   +  G+ +V     A ++   M E G +P   +Y  ++  +    ++         
Sbjct: 436 TMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSR 495

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           M++ GI P       LI   CK +G +  A K F ++  RG   +   +  L++   R G
Sbjct: 496 MQKSGILPNDVLYTTLICYYCK-AGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREG 554

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            I EA+   + M     S   V++  +I+  C   ++  A  ++++M   G  PNV TY 
Sbjct: 555 MITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPNVCTYQ 614

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+ GLC+GG   QA + +  ++      +  T++ LL G+C+ G L EA+++ ++M   
Sbjct: 615 NLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKN 674

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
              PD   Y  ++S FC  GK   A   L  M+  G+ P+ + ++        ++ GL  
Sbjct: 675 NCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYT-------CLLNGLIN 727

Query: 386 TDPNRA--FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443
               +A  +  +  +    +  D + Y+SL+  + K  +++   R++ ++  +   P+  
Sbjct: 728 EGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSA 787

Query: 444 TWSAVMTALWDRRKMRQAAEL 464
           +++ +M     R +  ++  L
Sbjct: 788 SYNILMHGYVKRGQFSKSLYL 808



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 182/401 (45%), Gaps = 17/401 (4%)

Query: 87   IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
            + L ICR YG +   LD   + +KM +  C P   +Y  +L+    + ++  A    + M
Sbjct: 651  LLLGICR-YGTLDEALD---LCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMM 706

Query: 147  REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP-NRGCTPDSYTYGTLINGLCRLG 205
             E G+ P   +   L+  L  N G + AA  +F E+    G   D   Y +L+NG  +  
Sbjct: 707  LEKGVVPDTVAYTCLLNGLI-NEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSR 765

Query: 206  KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
             +   K +  +M      P   +Y  L++G  +     +++ L++ M  KG+ P+  TY 
Sbjct: 766  NVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYR 825

Query: 266  SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
             L+ GL + G    A++ L+ M+ +   P+ + +  L+    ++ K+  A+++ + MK  
Sbjct: 826  LLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWL 885

Query: 326  GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
             + P +  +  +I+     G    +   L EM+  G+ PN   +         +V   C+
Sbjct: 886  HMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYI-------ALVNAKCR 938

Query: 386  T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
              + +RAF++   M+   I    +  SS+I   C+ G + ++  +   ++  G +P   T
Sbjct: 939  VGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVAT 998

Query: 445  WSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQNQDV 485
            ++ +M +L    K+  A  L L  LM  C    VD+ + +V
Sbjct: 999  FTTLMHSLCKESKIADA--LHLKRLMELC-RLRVDVVSYNV 1036



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 142/330 (43%), Gaps = 28/330 (8%)

Query: 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182
           Y   + IL++      A    +H+   G   C A    L++ + +   T    F++    
Sbjct: 107 YCMAVPILIQAQMHSQAMSVLKHLAVTGFS-CTAIFTSLLRTISRFDPTNHVVFEL---- 161

Query: 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSV 242
                         L+    +  K+ +A      M+      + V+  +++N L +    
Sbjct: 162 --------------LVKAYVKERKVLDAAVAVLFMDDCGFKASPVSCNTILNALVEEGES 207

Query: 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302
           +       E  ++     V T + L++ LC  G   +A ++LQ M S  H  N VTY+T+
Sbjct: 208 KHVWLFLRESLARKFPLGVTTCNILLNSLCTNGEFRKAEDMLQKMKSC-HISNSVTYNTI 266

Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
           L+   K+G+ + A+ +L+ M+   ++ D   Y  +I   C I +   A   L  M    +
Sbjct: 267 LHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKDDL 326

Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421
           TP+  T+       NT++ G  +    N A  V+  M  +++     TY+++I  +C+  
Sbjct: 327 TPDECTY-------NTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNR 379

Query: 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
            I K+  I+ E+ + G +P E T+SA++  
Sbjct: 380 RIDKALSILSEMQITGVMPSELTYSALLNG 409



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 114/240 (47%), Gaps = 9/240 (3%)

Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286
           V +  L+    + + V +A      M   G + +  + +++++ L + G S      L+ 
Sbjct: 157 VVFELLVKAYVKERKVLDAAVAVLFMDDCGFKASPVSCNTILNALVEEGESKHVWLFLRE 216

Query: 287 MISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGK 346
            ++++    + T + LLN LC  G+ ++A ++L +MK   +  ++  Y  I+  +   G+
Sbjct: 217 SLARKFPLGVTTCNILLNSLCTNGEFRKAEDMLQKMKSCHIS-NSVTYNTILHWYVKKGR 275

Query: 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISV 405
           ++ A   L++M    +  +  T+       N ++  LC+     RAF +   MR   ++ 
Sbjct: 276 FKAALCVLEDMERDSVQADVYTY-------NIMIDKLCRIKRSTRAFLLLKRMRKDDLTP 328

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D  TY++LI  F ++G I+ +  + + ++    +P   T++ ++      R++ +A  +L
Sbjct: 329 DECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSIL 388


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 207/419 (49%), Gaps = 22/419 (5%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR-----GYGRVHRPLDAMRV 107
           F+L+I  L+   +++ A  LL  V         D+F   C       + ++H   +A+ +
Sbjct: 364 FNLVIKGLLRDKRWKDAIGLLKLVVDTG---VPDVFTYGCLIHWLCKHQKLH---EAVNL 417

Query: 108 FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
           +DKMKE G +P+  +Y ++L    E+ ++  A + Y  M + G  P   +   L+K   K
Sbjct: 418 WDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIK 477

Query: 168 NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227
                D A+ +  EM   G +   YTY  LINGL  + ++ E  E+ K   ++   PT +
Sbjct: 478 KKA-FDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTM 536

Query: 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
           TY S+ING  ++  +  A  ++ +MR KG+ PN+ TY+S +DG C+  C   A++LL  +
Sbjct: 537 TYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYV 596

Query: 288 ISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKY 347
                +P+I  Y+  ++  CK+G +  A+  L  +   GL PD  +Y   ++ + ++   
Sbjct: 597 RRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMM 656

Query: 348 QEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF--QVYLSMRNRSISV 405
            EA+ F   M+   +  +         I+ T++ G  K   N AF  ++Y  M    +  
Sbjct: 657 AEASKFYYSMIKQRVVAD-------TEIYTTLIDGFSKVG-NVAFALELYSEMMANHVIP 708

Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           D  T+++L    C+ GDI  + R++D++      P+  T++ ++ A     K+++A +L
Sbjct: 709 DDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQL 767



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 124/492 (25%), Positives = 214/492 (43%), Gaps = 50/492 (10%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90
           AL +FD    +   G   D   + ++I   V       A  L D +        E ++  
Sbjct: 169 ALTLFDEMRGK---GCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAI 225

Query: 91  ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM---- 146
              G  ++     A++V  KM+E G EP   +Y +V+ +LV+  ++  A R    M    
Sbjct: 226 TISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLAT 285

Query: 147 -----------------------------REI---GIQPCVASLNVLIKALCKNSGTMDA 174
                                         E+   G+ P   +  VLIK  C   G  D 
Sbjct: 286 GKKMDVVLATMLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKG-CDAEGMTDE 344

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
            +K+ R+M  +G  P +Y +  +I GL R  +  +A  L K +      P V TY  LI+
Sbjct: 345 TYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLK-LVVDTGVPDVFTYGCLIH 403

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
            LC+ + + EA+ L+++M+  GV+P++ TY SL+ G C+ G   +A++L   M  K   P
Sbjct: 404 WLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPP 463

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N VTY+TL+ G  K+     A  +L+ M+  G+      Y  +I+    + +  E    L
Sbjct: 464 NEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEML 523

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSL 413
              +  G  P  +T+       N+++ G  K      AF +Y  MR + I+ + +TY+S 
Sbjct: 524 KRFLSEGFVPTTMTY-------NSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSF 576

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
           I  +C+      + +++  +  DG  PD   ++A +     +  M +A   L+L L+   
Sbjct: 577 IDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVL-LLKDG 635

Query: 474 VEAEVDIQNQDV 485
           +  +V + N  V
Sbjct: 636 LTPDVTVYNSFV 647



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 154/337 (45%), Gaps = 7/337 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLD--RVNKEKC-DITEDIFLSICRGYGRVHRP 101
           GF  +  T++ ++   +    F  A  LL+  R N   C D T +I ++   G   V+R 
Sbjct: 460 GFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILIN---GLYMVNRV 516

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +   +  +    G  PT  +Y +++   V+   +  AF  YR MR+ GI P + +    
Sbjct: 517 CEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSF 576

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   C+ +   D A K+   +   G  PD   Y   I+  C+ G +  A      +    
Sbjct: 577 IDGYCR-TNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDG 635

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            +P V  Y S + G    K + EA + +  M  + V  +   Y++L+DG  K G  + A+
Sbjct: 636 LTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFAL 695

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
           EL   M++    P+  T++ L +GLC+ G +  A  +LD M+   + P+   Y  +I+  
Sbjct: 696 ELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINAC 755

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNT 378
              GK QEA    DEM+  G+ P+  T+ +  R +N+
Sbjct: 756 VRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRTNNS 792



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 138/291 (47%), Gaps = 1/291 (0%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           NG    + T++++I+ L   N+    +++L R   E    T   + SI  G+ +      
Sbjct: 494 NGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGS 553

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  ++ +M++ G  P   +Y + +      N   LA +   ++R  GIQP +A+ N  I 
Sbjct: 554 AFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFID 613

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK  G M  A      +   G TPD   Y + + G   L  + EA + +  M  +   
Sbjct: 614 TFCKQ-GNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVV 672

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
                YT+LI+G  +  +V  A+ L+ EM +  V P+  T+++L  GLC+ G    A  L
Sbjct: 673 ADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRL 732

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334
           L  M      PNIVTY+ L+N   ++GKLQEA ++ D M   G+ PD   Y
Sbjct: 733 LDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTY 783



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 123/262 (46%), Gaps = 5/262 (1%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHR 100
           + GF     T++ +I+  V A     A  +  ++ K+   IT +I  + S   GY R + 
Sbjct: 528 SEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKG--ITPNIVTYTSFIDGYCRTNC 585

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A+++   ++  G +P   +Y   +    ++  +  A  F   + + G+ P V   N 
Sbjct: 586 CDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNS 645

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
            +    KN   M  A K +  M  +    D+  Y TLI+G  ++G +  A EL+ EM   
Sbjct: 646 FVTGY-KNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMAN 704

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P   T+T+L +GLC+S  ++ A RL ++MR   V PN+ TY+ L++   + G   +A
Sbjct: 705 HVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEA 764

Query: 281 MELLQMMISKRHRPNIVTYSTL 302
            +L   M+S    P+  TY  L
Sbjct: 765 FQLHDEMLSSGVVPDDTTYDIL 786



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 151/344 (43%), Gaps = 29/344 (8%)

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
           G    V  L+ ++  L + +    AA   +  M  RG  PD+ +   L+          +
Sbjct: 109 GSPAAVTLLSHVLTCLSRAASDCAAAAAAYSRMVTRGVVPDAKSRTDLLVTTALGASAAD 168

Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
           A  LF EM  K C      Y  +I    +     +A+RLF+EM   GV+P+   Y+  + 
Sbjct: 169 ALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITIS 228

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-GLK 328
           GLCK   + +A+++L  M      P  +TYS++++ L K  ++ EA+ + D+M L  G K
Sbjct: 229 GLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGKK 288

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI------------- 375
            D  L   ++  +C  G+  +A +  DE+V  G+TP  +T+ + I+              
Sbjct: 289 MDVVLATMLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKL 348

Query: 376 ---------------HNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
                           N V++GL +    +     L +   +   D  TY  LI   CK 
Sbjct: 349 CRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIHWLCKH 408

Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             +H++  + D++   G  P   T+ +++    ++ +M +A +L
Sbjct: 409 QKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKL 452


>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
          Length = 418

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/449 (28%), Positives = 214/449 (47%), Gaps = 48/449 (10%)

Query: 13  ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDL 72
           I+  ++  L+R +     AL +F +   +    FR+ + ++ L+I+KL  +  F   E +
Sbjct: 7   ISPFRLSSLLRLQNGPKLALQLFQNPNPD-PKPFRYTHLSYDLIITKLGRSRMFHEMEQI 65

Query: 73  LDRVNKE-KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
           L ++ +E +    E IF ++   YGR   P  A++ F+ + EF C+ T KS  ++L    
Sbjct: 66  LSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQRTVKSLNSLLNA-- 123

Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
                                             CK     D          ++  TP+ 
Sbjct: 124 -------------------------------LLNCKEFEKFDGILSGI----DKFATPNV 148

Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
            TY  LIN  C  G++ +A  +F EM  K   P VVT+ +LI+GLC+   ++EA RL E+
Sbjct: 149 CTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDEASRLKED 208

Query: 252 M-RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
           M +   V+PN F Y+SLM GLC+    S A EL + M++ + R +   YSTL+  L K G
Sbjct: 209 MVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVG 268

Query: 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
           +  E   +L+ M+  G KPD   Y  +IS FC+   ++ A   L+EMV+ G  P+ +++ 
Sbjct: 269 RKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISY- 327

Query: 371 LHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
                 N ++ GLCK    R A  ++  M  R  + D  +Y  L    C+    +++A I
Sbjct: 328 ------NVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFI 381

Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKM 458
           +DE+V  G  P   + +  + AL   R++
Sbjct: 382 LDEMVFKGYAPKSASXTKFVEALCSGREL 410



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 9/248 (3%)

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           K  +P V TY  LIN  C S  + +A  +F+EM  K V PNV T+ +L+ GLC+     +
Sbjct: 142 KFATPNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDE 201

Query: 280 AMELLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           A  L + M+   + +PN   Y++L+ GLC+  +L  A E+   M    L+ D+G+Y  +I
Sbjct: 202 ASRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLI 261

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLS 397
           +    +G+  E    L+EM   G  P+ +T+       N ++ G C + D   A+ V   
Sbjct: 262 AALFKVGRKDEVFVVLEEMRENGCKPDTVTY-------NAMISGFCNEKDFEAAYGVLEE 314

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M  +    D ++Y+ +I+  CK+G   ++  + +++   GC PD G++  +   L +  +
Sbjct: 315 MVVKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQ 374

Query: 458 MRQAAELL 465
             +AA +L
Sbjct: 375 FNEAAFIL 382



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 130/267 (48%), Gaps = 2/267 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T++++I+    + +   A ++ D + ++        F ++  G  R  R  +A R+ + M
Sbjct: 150 TYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDEASRLKEDM 209

Query: 112 -KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170
            K F  +P    Y +++  L   N+L LAF   + M    ++      + LI AL K  G
Sbjct: 210 VKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFK-VG 268

Query: 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230
             D  F +  EM   GC PD+ TY  +I+G C       A  + +EM  K C P V++Y 
Sbjct: 269 RKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYN 328

Query: 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290
            +I+GLC+     EA  LFE+M  +G  P+V +Y  L DGLC+G   ++A  +L  M+ K
Sbjct: 329 VIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFK 388

Query: 291 RHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            + P   + +  +  LC   +L   V+
Sbjct: 389 GYAPKSASXTKFVEALCSGRELGVVVQ 415



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 157/332 (47%), Gaps = 50/332 (15%)

Query: 175 AFKIFREMPNRGCTPDSYT---YGTLINGLCRLGKIYEAKELFKEM--ETKACSPTVVTY 229
           A ++F+  PN    P  YT   Y  +I  L R    +E +++  ++  ET+  SP  + +
Sbjct: 25  ALQLFQN-PNPDPKPFRYTHLSYDLIITKLGRSRMFHEMEQILSQLRRETRF-SPKEIIF 82

Query: 230 TSLINGLCQSKSVEEAMRLFE---EMR-------------------------------SK 255
            ++I+   +++  + A++ FE   E R                                K
Sbjct: 83  CNVISFYGRARLPDRAIQTFESIPEFRCQRTVKSLNSLLNALLNCKEFEKFDGILSGIDK 142

Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
              PNV TY+ L++  C  G    A  +   M+ K   PN+VT+ TL++GLC++ +L EA
Sbjct: 143 FATPNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDEA 202

Query: 316 VEILDRM-KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
             + + M K+  +KP+A +Y  ++   C + +   A     EMV      N+L   L   
Sbjct: 203 SRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMV-----ANKL--RLDSG 255

Query: 375 IHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433
           I++T++  L K    +  F V   MR      D++TY+++I+ FC + D   +  +++E+
Sbjct: 256 IYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEM 315

Query: 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           V+ GC PD  +++ +++ L    K R+A +L 
Sbjct: 316 VVKGCKPDVISYNVIISGLCKEGKWREANDLF 347



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 1/199 (0%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
            ++ ++  L   N+   A +L   +   K  +   I+ ++     +V R  +   V ++M
Sbjct: 221 VYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEM 280

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +E GC+P   +Y  +++    E   + A+     M   G +P V S NV+I  LCK  G 
Sbjct: 281 RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCK-EGK 339

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
              A  +F +MP RGCTPD  +Y  L +GLC   +  EA  +  EM  K  +P   + T 
Sbjct: 340 WREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASXTK 399

Query: 232 LINGLCQSKSVEEAMRLFE 250
            +  LC  + +   ++ FE
Sbjct: 400 FVEALCSGRELGVVVQSFE 418



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 78/212 (36%), Gaps = 39/212 (18%)

Query: 4   KTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63
           K M     ++ S     LI A   V +   +F        NG + D  T++ MIS   + 
Sbjct: 243 KEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNE 302

Query: 64  NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123
             F  A                         YG          V ++M   GC+P   SY
Sbjct: 303 KDFEAA-------------------------YG----------VLEEMVVKGCKPDVISY 327

Query: 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
             +++ L +E + + A   +  M   G  P V S  +L   LC+     +AAF I  EM 
Sbjct: 328 NVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAF-ILDEMV 386

Query: 184 NRGCTPDSYTYGTLINGLC---RLGKIYEAKE 212
            +G  P S +    +  LC    LG + ++ E
Sbjct: 387 FKGYAPKSASXTKFVEALCSGRELGVVVQSFE 418


>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
          Length = 1051

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 178/344 (51%), Gaps = 6/344 (1%)

Query: 22  IRAEKDVNKALVIFDSATAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           +++ +D + AL +F+    +Y   GF+HD  ++S ++ KL  +  F   E LLD +    
Sbjct: 388 LKSVQDPDDALSLFN----QYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNIN 443

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
               E +F+++ + YG+   P  A+ +F +M  F C  T  S+ T+L +LVE ++   A 
Sbjct: 444 IRCRETLFIALIQHYGKSQMPEKAIELFQRMPSFNCHRTIVSFNTLLNVLVEIDRFLDAI 503

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
             +    ++G +    S N++IK      G  D A+++F EM ++   P   T+ +LI  
Sbjct: 504 GIFDRSTKMGFRRNSISFNIIIKGWL-GKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGF 562

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
           LC  G +  A  L ++M  K   P  VTY  L+ GLC     +EA ++  +M  +G +P 
Sbjct: 563 LCGKGDLDGAMGLLZDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPR 622

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
           +  +  LM  L + G       LL  M  +R +P++VTY+ L+N LCKEG+  EA ++L 
Sbjct: 623 LLNFGVLMSDLGRRGRIDDXKTLLLEMKRRRFKPDVVTYNILINXLCKEGRAXEAYKVLV 682

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
            M++ G +P+A  Y  ++  FC +  ++     L  M++ G  P
Sbjct: 683 EMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCP 726



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 178/376 (47%), Gaps = 11/376 (2%)

Query: 98  VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157
           V  P DA+ +F++ ++ G +    SY  ++  L      +       +++ I I+ C  +
Sbjct: 391 VQDPDDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIR-CRET 449

Query: 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217
           L + +      S   + A ++F+ MP+  C     ++ TL+N L  + +  +A  +F   
Sbjct: 450 LFIALIQHYGKSQMPEKAIELFQRMPSFNCHRTIVSFNTLLNVLVEIDRFLDAIGIFDRS 509

Query: 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277
                    +++  +I G       ++A ++FEEM  K V+P V T++SL+  LC  G  
Sbjct: 510 TKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDL 569

Query: 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337
             AM LLZ MI KRHRPN VTY+ L+ GLC  GK +EA +++  M  QG KP    +G +
Sbjct: 570 DGAMGLLZDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVL 629

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYL 396
           +S     G+  +    L EM      P+ +T+       N ++  LCK      A++V +
Sbjct: 630 MSDLGRRGRIDDXKTLLLEMKRRRFKPDVVTY-------NILINXLCKEGRAXEAYKVLV 682

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M+      ++ TY  ++  FC+  D     +++  +++ G  P   ++  ++  L    
Sbjct: 683 EMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCDLVVGLLKNG 742

Query: 457 KMRQAAELLLLELMNK 472
           K+  A    +LE M K
Sbjct: 743 KIDGAC--FVLEEMEK 756



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 12/281 (4%)

Query: 31  ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPA----EDLLDRVNKEKCDITED 86
           A+ IFD +T     GFR ++ +F+++I   +   ++  A    E+++D+  K    +T +
Sbjct: 502 AIGIFDRSTKM---GFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTV-VTFN 557

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
             +    G G +     AM + + M +    P   +Y  ++  L    + K A +    M
Sbjct: 558 SLIGFLCGKGDLD---GAMGLLZDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDM 614

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
              G +P + +  VL+  L +  G +D    +  EM  R   PD  TY  LIN LC+ G+
Sbjct: 615 DYQGCKPRLLNFGVLMSDLGRR-GRIDDXKTLLLEMKRRRFKPDVVTYNILINXLCKEGR 673

Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
             EA ++  EM+   C P   TY  +++G CQ +  E  +++   M   G  P + ++  
Sbjct: 674 AXEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMCGHCPRLESFCD 733

Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           L+ GL K G    A  +L+ M  ++ R ++  +  L+   C
Sbjct: 734 LVVGLLKNGKIDGACFVLEEMEKRKMRFHLEAWEALVKDAC 774


>gi|255584082|ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527472|gb|EEF29603.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 487

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 214/427 (50%), Gaps = 23/427 (5%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKA-LVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF 66
           + ST++ +  +  L +A K++NKA  VI D        G   D  T++ +I        F
Sbjct: 34  RLSTRLLNISIASLCKA-KELNKAESVIIDGIRL----GVLPDVVTYNTLIDAYSRFVSF 88

Query: 67  RPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124
             A  LL+R+   +  I+ D+  + S+  G  R    L+++ +FD+M   G  P   SY 
Sbjct: 89  NAAYSLLNRM--REASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYN 146

Query: 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184
           T++    +  + + A    R +   G+ PC  + N++I  LCKN G    A  +FR +  
Sbjct: 147 TLMHCFFKLGKAEEANEVLRQIFGHGLSPCPTTFNIMINGLCKN-GFTSNALMLFRSLKQ 205

Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244
            G  P   TY  LINGLC+  ++  A+ + KE+ET    P  +TYT+++    +S+  ++
Sbjct: 206 HGFVPQLITYNILINGLCKDRRLRAARSMLKELETSGYVPNAITYTTVMKFCFRSRRFKQ 265

Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
            + + +EM  KG   + F Y +++  L K G   +A E ++ MI      ++ +Y+TL+N
Sbjct: 266 GLEILQEMIDKGYTFDGFAYCTVVGVLIKTGRLEEATEYMRQMIKNGIEHDLASYNTLIN 325

Query: 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITP 364
             CK+G L+ A ++LD ++ +GL+ D   +  +I+  C  G    A   +  M + G   
Sbjct: 326 LYCKQGNLEAAYQLLDEIEKEGLQCDEYTHTILINWMCKAGNILGARRHMQHMNMMGFDS 385

Query: 365 NRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
             +         N +V GLCK    + A +++ SM+ R    DS TYSSL+   CK G  
Sbjct: 386 CLVAL-------NCMVDGLCKNGQIDHAVKLFESMKMR----DSFTYSSLVHNLCKNGRF 434

Query: 424 HKSARIV 430
           H++++++
Sbjct: 435 HRASKLL 441



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 42  YANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI-CRGYGRVHR 100
           + +G     +TF++MI+ L   N F     +L R  K+   + + I  +I   G  +  R
Sbjct: 169 FGHGLSPCPTTFNIMINGLCK-NGFTSNALMLFRSLKQHGFVPQLITYNILINGLCKDRR 227

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A  +  +++  G  P   +Y TV+       + K      + M + G      +   
Sbjct: 228 LRAARSMLKELETSGYVPNAITYTTVMKFCFRSRRFKQGLEILQEMIDKGYTFDGFAYCT 287

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           ++  L K +G ++ A +  R+M   G   D  +Y TLIN  C+ G +  A +L  E+E +
Sbjct: 288 VVGVLIK-TGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCKQGNLEAAYQLLDEIEKE 346

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
                  T+T LIN +C++ ++  A R  + M   G +  +   + ++DGLCK G    A
Sbjct: 347 GLQCDEYTHTILINWMCKAGNILGARRHMQHMNMMGFDSCLVALNCMVDGLCKNGQIDHA 406

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK--PDA 331
           ++L + M  +    +  TYS+L++ LCK G+   A ++L      G+K  P A
Sbjct: 407 VKLFESMKMR----DSFTYSSLVHNLCKNGRFHRASKLLLSCLRSGMKILPSA 455



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 119/286 (41%), Gaps = 35/286 (12%)

Query: 29  NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88
           + AL++F S      +GF     T++++I+ L    + R A  +L  +           +
Sbjct: 194 SNALMLFRSLKQ---HGFVPQLITYNILINGLCKDRRLRAARSMLKELETSGYVPNAITY 250

Query: 89  LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148
            ++ +   R  R    + +  +M + G      +Y TV+ +L++  +L+ A  + R M +
Sbjct: 251 TTVMKFCFRSRRFKQGLEILQEMIDKGYTFDGFAYCTVVGVLIKTGRLEEATEYMRQMIK 310

Query: 149 IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208
            GI+  +AS N LI   CK  G ++AA+++  E+   G   D YT+  LIN +C+ G I 
Sbjct: 311 NGIEHDLASYNTLINLYCK-QGNLEAAYQLLDEIEKEGLQCDEYTHTILINWMCKAGNIL 369

Query: 209 EAKELFKEMETKACSPTVV-------------------------------TYTSLINGLC 237
            A+   + M        +V                               TY+SL++ LC
Sbjct: 370 GARRHMQHMNMMGFDSCLVALNCMVDGLCKNGQIDHAVKLFESMKMRDSFTYSSLVHNLC 429

Query: 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           ++     A +L       G++        ++ GL   G   +A +L
Sbjct: 430 KNGRFHRASKLLLSCLRSGMKILPSAQRVVISGLRYSGFQKEARKL 475


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 152/265 (57%), Gaps = 1/265 (0%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VFD + ++   P+  S+ T++   +    L   FR    M   G+QP V + +VLI 
Sbjct: 155 AQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLIN 214

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK S  MD A ++  EM + G  P+  T+ TLI+G C+ GK+  A E++K+M ++   
Sbjct: 215 GLCKES-KMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFL 273

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P ++TY +LI GLC+   + +A  L EEM  KG++P+  TY++L+DG CK G      EL
Sbjct: 274 PDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFEL 333

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
            + MI +  R + VTY+ L++GLC+EG+  +A ++L  M   GLKPD G Y  I++ FC 
Sbjct: 334 RKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCK 393

Query: 344 IGKYQEAANFLDEMVLGGITPNRLT 368
            G  + A+  L EM   G  P  +T
Sbjct: 394 TGDVKTASKLLREMQRNGPVPGVVT 418



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 196/414 (47%), Gaps = 27/414 (6%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC-DITEDIFLSICRGYGRVHRPL-- 102
           +RH   ++  MI  L +      A+ L+  V   K  D T  +F +I    G     L  
Sbjct: 9   YRHTLHSYCTMIHFLCTHQMLVEAKSLIRVVVSRKGKDSTSAVFAAILETKGTQISDLYV 68

Query: 103 ---------------DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
                          DA++ F   K+        +   VL  L++    +L + FY+ + 
Sbjct: 69  FSGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFYKEIL 128

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
           E G  P +   N+L+   CK  G M  A  +F  +      P   ++ TL+NG  RLG +
Sbjct: 129 ECGYPPSLYFFNILMHRFCK-EGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDL 187

Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
            E   L   M      P V TY+ LINGLC+   ++EA  +  EM   G+ PN  T+++L
Sbjct: 188 DEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTL 247

Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
           +DG CK G    AME+ + M+S+   P+++TY+TL+ GLC+ G L +A ++++ M ++GL
Sbjct: 248 IDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGL 307

Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD 387
           KPD   Y  +I   C  G  +        M+   I  + +T++        ++ GLC+  
Sbjct: 308 KPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYT-------ALISGLCREG 360

Query: 388 -PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
               A ++   M    +  D+ TY+ ++  FCK GD+  +++++ E+  +G +P
Sbjct: 361 RAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVP 414



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 165/292 (56%), Gaps = 8/292 (2%)

Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
            +  ++E+   G  P  Y +  L++  C+ G++  A+ +F  +   +  P+VV++ +L+N
Sbjct: 120 VWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMN 179

Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
           G  +   ++E  RL   M + GV+P+V+TYS L++GLCK     +A E+L  M+     P
Sbjct: 180 GYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVP 239

Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
           N VT++TL++G CK GK+  A+EI  +M  QG  PD   Y  +I   C  G   +A + +
Sbjct: 240 NGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLV 299

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413
           +EM++ G+ P+++T++       T++ G CK  D    F++   M   +I +D +TY++L
Sbjct: 300 EEMIMKGLKPDKITYT-------TLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTAL 352

Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           I+  C++G    + +++ E++  G  PD GT++ +M        ++ A++LL
Sbjct: 353 ISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLL 404



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 129/261 (49%), Gaps = 8/261 (3%)

Query: 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249
           D Y +  L+      G + +A + F+  +         T   ++  L + +        +
Sbjct: 65  DLYVFSGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFY 124

Query: 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           +E+   G  P+++ ++ LM   CK G    A  +   +     RP++V+++TL+NG  + 
Sbjct: 125 KEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRL 184

Query: 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
           G L E   +   M   G++PD   Y  +I+  C   K  EA   L+EM+  G+ PN +T+
Sbjct: 185 GDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTF 244

Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
           +       T++ G CK    + A ++Y  M ++    D +TY++LI   C++GD+ ++  
Sbjct: 245 T-------TLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARD 297

Query: 429 IVDELVLDGCLPDEGTWSAVM 449
           +V+E+++ G  PD+ T++ ++
Sbjct: 298 LVEEMIMKGLKPDKITYTTLI 318


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 210/417 (50%), Gaps = 13/417 (3%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRV-NKEKCDITEDIFLS--ICRGYGRVHRPLDAMRVFD 109
           F+ +++ +     +    +L  R+ N E  +I+ D++    +   + R  +P  A+    
Sbjct: 13  FNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLG 72

Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
           KM + G EP   +  +++      N +K A      M ++GI+  V    +LI  LCKN 
Sbjct: 73  KMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNR 132

Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTY 229
             +  A ++ + M +RG +P+  TY +LI GLC+ G++ +A+    EM++K  +P V+T+
Sbjct: 133 LVV-PALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITF 191

Query: 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289
           ++LI+   +   + +   +++ M    ++PNVFTYSSL+ GLC      +A+++L +MIS
Sbjct: 192 SALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMIS 251

Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349
           K   PN+VTYSTL NG  K  ++ + +++LD M  +G+  +      +I  +   GK   
Sbjct: 252 KGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDL 311

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL-CKTDPNRAFQVYLSMRNRSISVDSL 408
           A      M   G+ PN       IR +N V+ GL    +  +A   +  M+     +D +
Sbjct: 312 ALGVFGYMTSNGLIPN-------IRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDII 364

Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           TY+ +I   CK   + ++  +  +L      PD   ++ +M A  +R  MR  A+ L
Sbjct: 365 TYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYT-IMIAELNRAGMRTEADAL 420



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 149/306 (48%), Gaps = 1/306 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D    +++I  L       PA ++L R+           + S+  G  +  R  DA
Sbjct: 113 GIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADA 172

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
            R   +M      P   ++  ++    +  +L      Y+ M ++ I P V + + LI  
Sbjct: 173 ERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYG 232

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC ++  +D A K+   M ++GCTP+  TY TL NG  +  ++ +  +L  +M  +  + 
Sbjct: 233 LCMHN-RVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAA 291

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             V+  +LI G  Q+  ++ A+ +F  M S G+ PN+ +Y+ ++ GL   G   +A+   
Sbjct: 292 NTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRF 351

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M   R+  +I+TY+ +++G+CK   ++EA ++  ++K + ++PD   Y  +I+     
Sbjct: 352 EHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRA 411

Query: 345 GKYQEA 350
           G   EA
Sbjct: 412 GMRTEA 417



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 130/257 (50%), Gaps = 17/257 (6%)

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMR-SKGVE--PNVFTYSSLMDGLCKGGCSSQA 280
           P++V +  ++  + + +  +  + L++ +  ++G+E  P+++T + L++  C+    S A
Sbjct: 8   PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 67

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
           +  L  M+     P+IVT S+L+NG C    +++AV +  +M+  G+K D  +   +I  
Sbjct: 68  LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 127

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT----DPNRAFQVYL 396
            C       A   L  M   GI+PN +T+S       +++ GLCK+    D  R      
Sbjct: 128 LCKNRLVVPALEVLKRMKDRGISPNVVTYS-------SLITGLCKSGRLADAERRLH--- 177

Query: 397 SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456
            M ++ I+ + +T+S+LI  + K+G + K   +   ++     P+  T+S+++  L    
Sbjct: 178 EMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHN 237

Query: 457 KMRQAAELLLLELMNKC 473
           ++ +A ++L L +   C
Sbjct: 238 RVDEAIKMLDLMISKGC 254


>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1152

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 238/496 (47%), Gaps = 51/496 (10%)

Query: 18  VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVN 77
           VL+++R  + +NKA  ++++      +G      TF+ M+     A      + +   + 
Sbjct: 246 VLKVLRDSRMMNKASAVYETMIE---HGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMK 302

Query: 78  KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
           +   + +E  +  +  G+ +  +  +A R    M+  G   TP S+  ++    ++    
Sbjct: 303 RRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFD 362

Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
            A+     M   GI P  ++ N+ I ALC + G +D A    RE+ +    PD  +Y TL
Sbjct: 363 DAWGVTDEMLNAGIYPTTSTYNIYICALC-DFGRIDDA----RELLSSMAAPDVVSYNTL 417

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           ++G  ++GK  EA  LF ++      P++VTY +LI+GLC+S ++E A RL EEM ++ +
Sbjct: 418 MHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLI 477

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK--------------------------- 290
            P+V TY++L+ G  K G  S A E+   M+ K                           
Sbjct: 478 FPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFR 537

Query: 291 ---------RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
                     H P++  Y+  ++GLCK G L +A+E   ++   GL PD   Y  +I  +
Sbjct: 538 LHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGY 597

Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401
            + G+++ A N  DEM+   + P+ +T+ + I  H    +        +AFQ    M+ R
Sbjct: 598 LENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGR------LEQAFQYSTEMKKR 651

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
            +  + +T+++L+   CK G+I ++ R + ++  +G  P++ +++ +++   D  K  + 
Sbjct: 652 GVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEV 711

Query: 462 AELLLLELMNKCVEAE 477
            + L  E+++K +E +
Sbjct: 712 VK-LYKEMLDKEIEPD 726



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 185/387 (47%), Gaps = 18/387 (4%)

Query: 34  IFDSA---TAEYAN-GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89
           +FD A   T E  N G     ST+++ I  L    +   A +LL  +     D+    + 
Sbjct: 360 LFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM--AAPDVVS--YN 415

Query: 90  SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
           ++  GY ++ + ++A  +FD ++     P+  +Y T++  L E   L+ A R    M   
Sbjct: 416 TLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQ 475

Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
            I P V +   L+K   KN G +  A +++ EM  +G  PD Y Y T   G  RLG   +
Sbjct: 476 LIFPDVITYTTLVKGFVKN-GNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDK 534

Query: 210 AKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268
           A  L +EM  T   +P +  Y   I+GLC+  ++ +A+    ++   G+ P+  TY++++
Sbjct: 535 AFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVI 594

Query: 269 DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328
            G  + G    A  L   M+ KR  P+++TY  L+ G  K G+L++A +    MK +G++
Sbjct: 595 RGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVR 654

Query: 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP 388
           P+   +  ++   C  G   EA  +L +M   GI PN+ ++++       ++   C  + 
Sbjct: 655 PNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTM-------LISKNCDFEK 707

Query: 389 -NRAFQVYLSMRNRSISVDSLTYSSLI 414
                ++Y  M ++ I  D  T+ +L 
Sbjct: 708 WEEVVKLYKEMLDKEIEPDGYTHRALF 734



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 155/306 (50%), Gaps = 14/306 (4%)

Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
           K    F + +R+ G  P V + N+++K L ++S  M+ A  ++  M   G  P   T+ T
Sbjct: 223 KFLLSFEKMIRK-GFLPSVRNCNIVLKVL-RDSRMMNKASAVYETMIEHGIMPTVITFNT 280

Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
           +++   + G +    +++ EM+ +    + VTY  LING  ++  +EEA R   +MR  G
Sbjct: 281 MLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSG 340

Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
                ++++ L++G CK G    A  +   M++    P   TY+  +  LC  G++ +A 
Sbjct: 341 FAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDAR 400

Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
           E+L  M      PD   Y  ++  +  +GK+ EA+   D++  G I P+ +T+       
Sbjct: 401 ELLSSMA----APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTY------- 449

Query: 377 NTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
           NT++ GLC++ +   A ++   M  + I  D +TY++L+  F K G++  +  + DE++ 
Sbjct: 450 NTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLR 509

Query: 436 DGCLPD 441
            G  PD
Sbjct: 510 KGIKPD 515



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 94  GYGRVHRPLDAMRVFDKMKEFGCE----------PTPKSYITVLAILVEENQLKLAFRFY 143
           GY    R +  +R+ D  K F             P    Y   +  L +   L  A  F 
Sbjct: 516 GYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQ 575

Query: 144 RHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
           R +  +G+ P   +   +I+   +N G    A  ++ EM  +   P   TY  LI G  +
Sbjct: 576 RKIFRVGLVPDHVTYTTVIRGYLEN-GQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAK 634

Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
            G++ +A +   EM+ +   P V+T+ +L+ G+C++ +++EA R   +M  +G+ PN ++
Sbjct: 635 AGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYS 694

Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309
           Y+ L+   C      + ++L + M+ K   P+  T+  L   L K+
Sbjct: 695 YTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKD 740



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 61/286 (21%)

Query: 240 KSVEEAMRL-FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
           KS+ E   L FE+M  KG  P+V   + ++  L      ++A  + + MI     P ++T
Sbjct: 218 KSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVIT 277

Query: 299 YSTLL-----------------------------------NGLCKEGKLQEAVEILDRMK 323
           ++T+L                                   NG  K GK++EA      M+
Sbjct: 278 FNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMR 337

Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI-------RI- 375
             G       +  +I  +C  G + +A    DEM+  GI P   T++++I       RI 
Sbjct: 338 RSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRID 397

Query: 376 ----------------HNTVVQGLCKTDPN-RAFQVYLSMRNRSISVDSLTYSSLITCFC 418
                           +NT++ G  K      A  ++  +R   I    +TY++LI   C
Sbjct: 398 DARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLC 457

Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
           + G++  + R+ +E+      PD  T++ ++        +  A E+
Sbjct: 458 ESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEV 503


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 218/470 (46%), Gaps = 45/470 (9%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T IT + +++ +   K +  A  +    T +   GF  +   ++ +I   + A     A 
Sbjct: 318 TLITYSILVKGLTRAKRIGDAYFVLKEMTKK---GFPPNVIVYNNLIDSFIEAGSLNKAI 374

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           ++ D +  +   +T   + ++ +GY +  +  +A R+  +M   G      S+ +V+ +L
Sbjct: 375 EIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLL 434

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN---------------------- 168
                   A RF   M    + P    L  LI  LCK+                      
Sbjct: 435 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 494

Query: 169 ------------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
                       +G +D AF+I +E+  RGC  D  +Y TLI+G C   K+ EA     E
Sbjct: 495 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE 554

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +   P   TY+ LI GL     VEEA++ +++ +  G+ P+V+TYS ++DG CK   
Sbjct: 555 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 614

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
           + +  E    M+SK  +PN V Y+ L+   C+ G+L  A+E+ + MK +G+ P++  Y  
Sbjct: 615 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 674

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL 396
           +I     I + +EA    +EM + G+ PN   ++        ++ G  K       +  L
Sbjct: 675 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT-------ALIDGYGKLGQMVKVECLL 727

Query: 397 -SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
             M ++++  + +TY+ +I  + + G++ +++R+++E+   G +PD  T+
Sbjct: 728 REMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITY 777



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 187/364 (51%), Gaps = 12/364 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ VF  +   G  P+  +   +L  LV  N+ +     +  + + G+ P V      I 
Sbjct: 199 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAIN 257

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE-METKAC 222
           A CK  G ++ A K+F +M   G  P+  T+ T+I+GL   G+ Y+   +FKE M  +  
Sbjct: 258 AFCK-GGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGR-YDEAFMFKEKMVERGM 315

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT++TY+ L+ GL ++K + +A  + +EM  KG  PNV  Y++L+D   + G  ++A+E
Sbjct: 316 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 375

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +  +M+SK       TY+TL+ G CK G+   A  +L  M   G   + G +  +I   C
Sbjct: 376 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 435

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
               +  A  F+ EM+L  ++P          +  T++ GLCK   + +A +++    N+
Sbjct: 436 SHLMFDSALRFVGEMLLRNMSPGG-------GLLTTLISGLCKHGKHSKALELWFQFLNK 488

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              VD+ T ++L+   C+ G + ++ RI  E++  GC+ D  +++ +++    ++K+ +A
Sbjct: 489 GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEA 548

Query: 462 AELL 465
              L
Sbjct: 549 FMFL 552



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 232/504 (46%), Gaps = 79/504 (15%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGYGRV 98
           G     +T +++++ LV AN+F+   +  D V K    ++ D++L      + C+G G+V
Sbjct: 210 GMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK---GVSPDVYLFTTAINAFCKG-GKV 265

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
               +A+++F KM+E G  P   ++ TV+  L    +   AF F   M E G++P + + 
Sbjct: 266 E---EAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITY 322

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           ++L+K L +     DA F + +EM  +G  P+   Y  LI+     G + +A E+   M 
Sbjct: 323 SILVKGLTRAKRIGDAYF-VLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 381

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS------------ 266
           +K  S T  TY +LI G C++   + A RL +EM S G   N  +++S            
Sbjct: 382 SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 441

Query: 267 -----------------------LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
                                  L+ GLCK G  S+A+EL    ++K    +  T + LL
Sbjct: 442 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 501

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +GLC+ GKL EA  I   +  +G   D   Y  +IS  C   K  EA  FLDEMV  G+ 
Sbjct: 502 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 561

Query: 364 PNRLTWSL----------------------------HIRIHNTVVQGLCKTDPNRAFQVY 395
           P+  T+S+                             +  ++ ++ G CK +     Q +
Sbjct: 562 PDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEF 621

Query: 396 L-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M ++++  +++ Y+ LI  +C+ G +  +  + +++   G  P+  T+++++  +  
Sbjct: 622 FDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSI 681

Query: 455 RRKMRQAAELLLLELMNKCVEAEV 478
             ++ + A+LL  E+  + +E  V
Sbjct: 682 ISRVEE-AKLLFEEMRMEGLEPNV 704



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 163/315 (51%), Gaps = 7/315 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           GF  D  T + ++  L  A +   A  +   +    C    ++ +  +S C G  ++   
Sbjct: 489 GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLD-- 546

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A    D+M + G +P   +Y  ++  L   N+++ A +F+   +  G+ P V + +V+
Sbjct: 547 -EAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVM 605

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK   T +   + F EM ++   P++  Y  LI   CR G++  A EL ++M+ K 
Sbjct: 606 IDGCCKAERTEEGQ-EFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 664

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            SP   TYTSLI G+     VEEA  LFEEMR +G+EPNVF Y++L+DG  K G   +  
Sbjct: 665 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 724

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ M SK   PN +TY+ ++ G  ++G + EA  +L+ M+ +G+ PD+  Y + I  +
Sbjct: 725 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 784

Query: 342 CDIGKYQEAANFLDE 356
              G   EA    DE
Sbjct: 785 LKQGGVLEAFKGSDE 799



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 202/425 (47%), Gaps = 10/425 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S+++  L  A +   A  +L  + K+       ++ ++   +        A+ + D M
Sbjct: 321 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 380

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G   T  +Y T++    +  Q   A R  + M  IG      S   +I  LC +   
Sbjct: 381 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHL-M 439

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D+A +   EM  R  +P      TLI+GLC+ GK  +A EL+ +   K       T  +
Sbjct: 440 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 499

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++GLC++  ++EA R+ +E+  +G   +  +Y++L+ G C      +A   L  M+ + 
Sbjct: 500 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG 559

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+  TYS L+ GL    K++EA++  D  K  G+ PD   Y  +I   C   + +E  
Sbjct: 560 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQ 619

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
            F DEM+   + PN +       ++N +++  C++   + A ++   M+++ IS +S TY
Sbjct: 620 EFFDEMMSKNVQPNTV-------VYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY 672

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +SLI        + ++  + +E+ ++G  P+   ++A++       +M +  E LL E+ 
Sbjct: 673 TSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVK-VECLLREMH 731

Query: 471 NKCVE 475
           +K V 
Sbjct: 732 SKNVH 736


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 197/436 (45%), Gaps = 70/436 (16%)

Query: 100 RPLDAMRV-FDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-----REIGIQP 153
           R  +AM +   +M   GC P   SY  +L  L +EN+ + A      M        G  P
Sbjct: 141 RTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPP 200

Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
            V S N +I  L +    +D A+ +F +M ++G +PD  TY ++I+ L +   + +A  +
Sbjct: 201 DVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVV 260

Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
              M      P  +T+ SL++G C S    +A+ +F+ M   GVEP+VFTY++LM  LCK
Sbjct: 261 LVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCK 320

Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC-------------------------- 307
            G S +A ++   M+ + H+PN  TY TLL+G                            
Sbjct: 321 NGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYI 380

Query: 308 ---------KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
                    K GK+ +A+ +  +M+ QGL PD   YG ++   C +GK  +A      ++
Sbjct: 381 FNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLI 440

Query: 359 LGGITPNRLTWSLHIR----------------------------IHNTVVQGLCKTD-PN 389
             G+TP+ + +   I                               NT++  LCK     
Sbjct: 441 SEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVA 500

Query: 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           RA  ++  M    +  D +TY++LI  +C  G + ++A++++ +VLDG  P+E T++ ++
Sbjct: 501 RAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMI 560

Query: 450 TALWDRRKMRQAAELL 465
                  ++  A  L 
Sbjct: 561 NGYCKNGRIEDAFSLF 576



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 191/367 (52%), Gaps = 9/367 (2%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159
           R ++A ++FD M + G +P   +Y T+L     E  L         M   GIQP     N
Sbjct: 323 RSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFN 382

Query: 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219
           +LI    K+ G +D A  +F +M  +G  PD+ TYG +++ LC +GK+ +A   F  + +
Sbjct: 383 ILIGTYTKH-GKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLIS 441

Query: 220 KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ 279
           +  +P  V + +LI+GLC     ++A  L  EM  +G+ PN   +++L++ LCK G  ++
Sbjct: 442 EGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVAR 501

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A  +  +M+    + +++TY+TL++G C  GK+ EA ++L+ M L G+KP+   Y  +I+
Sbjct: 502 AKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMIN 561

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAF-QVYLSM 398
            +C  G+ ++A +   +M   G+ P  +T+S       T++QGL +     A  ++YL M
Sbjct: 562 GYCKNGRIEDAFSLFRQMASKGVNPGIVTYS-------TILQGLFQARRTAAAKELYLWM 614

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
               I  D  TY+ ++   C+      + RI   L L     +  T++ ++ AL    + 
Sbjct: 615 IKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRH 674

Query: 459 RQAAELL 465
            +A +L 
Sbjct: 675 DEAKDLF 681



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 195/446 (43%), Gaps = 45/446 (10%)

Query: 21  LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80
           L+R  + ++ A  +FD    +   G   D  T++ +IS L  A     A  +L R+ K  
Sbjct: 212 LLREGRQLDTAYHLFDQMLDQ---GLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNG 268

Query: 81  CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140
                    S+  GY    +P DA+ VF +M   G EP   +Y T++  L +  +   A 
Sbjct: 269 AMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEAR 328

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
           + +  M + G +P  A+   L+       G++     +   M   G  PD Y +  LI  
Sbjct: 329 KIFDSMVKRGHKPNSATYGTLLHGYA-TEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGT 387

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
             + GK+ +A  LF +M  +  +P  VTY  +++ LC    V++AM  F  + S+G+ P+
Sbjct: 388 YTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPD 447

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320
              + +L+ GLC      +A EL   MI +   PN + ++TLLN LCKEG +  A  I D
Sbjct: 448 AVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFD 507

Query: 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380
            M    ++ D   Y  +I  +C  GK  EAA  L+ MVL G+ PN               
Sbjct: 508 LMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPN--------------- 552

Query: 381 QGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
                                      +TY+++I  +CK G I  +  +  ++   G  P
Sbjct: 553 --------------------------EVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNP 586

Query: 441 DEGTWSAVMTALWDRRKMRQAAELLL 466
              T+S ++  L+  R+   A EL L
Sbjct: 587 GIVTYSTILQGLFQARRTAAAKELYL 612



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 168/364 (46%), Gaps = 17/364 (4%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL---VEENQLKLAFRFYRHMREIGIQPCV 155
           H P  A+ +F +M        P + IT   ++        L LAF     +   G     
Sbjct: 67  HSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEA 126

Query: 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
            + + L+KALC    T +A     R MP  GCTP+ ++Y  L+ GLC   +  +A  L  
Sbjct: 127 ITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLH 186

Query: 216 EM----ETKAC-SPTVVTYTSLINGLC-QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269
            M    +T+    P VV+Y ++INGL  + + ++ A  LF++M  +G+ P+V TY+S++ 
Sbjct: 187 TMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIIS 246

Query: 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
            L K     +A  +L  M+     PN +T+++LL+G C  GK  +A+ +  RM   G++P
Sbjct: 247 ALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEP 306

Query: 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN 389
           D   Y  ++   C  G+  EA    D MV  G  PN  T+        T++ G       
Sbjct: 307 DVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYG-------TLLHGYATEGSL 359

Query: 390 RAFQVYLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448
                 L M  R+ I  D   ++ LI  + K G +  +  +  ++   G  PD  T+  V
Sbjct: 360 VKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIV 419

Query: 449 MTAL 452
           M AL
Sbjct: 420 MDAL 423



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 181/387 (46%), Gaps = 13/387 (3%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHR 100
           NG + D+  F+++I       +   A  L  ++ ++  +   +T  I +      G+V  
Sbjct: 372 NGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVD- 430

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
             DAM  F ++   G  P    +  ++  L   ++   A      M   GI P     N 
Sbjct: 431 --DAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNT 488

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           L+  LCK  G +  A  IF  M       D  TY TLI+G C  GK+ EA +L + M   
Sbjct: 489 LLNHLCK-EGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLD 547

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
              P  VTY ++ING C++  +E+A  LF +M SKGV P + TYS+++ GL +   ++ A
Sbjct: 548 GVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAA 607

Query: 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340
            EL   MI    + +I TY+ +L GLC+     +A+ I   + L     +   +  +I  
Sbjct: 608 KELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDA 667

Query: 341 FCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRN 400
               G++ EA +    ++  G+ PN +T+ L ++  + + QGL +        ++LS+  
Sbjct: 668 LLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMK--SLIEQGLLEE----LDDLFLSLEK 721

Query: 401 RSISVDSLTYSSLITCFCKKGDIHKSA 427
              + +S   ++L+    +KG++ K+ 
Sbjct: 722 NGCTANSRMLNALVGKLLQKGEVRKAG 748



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 164/372 (44%), Gaps = 53/372 (14%)

Query: 28  VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI 87
           V+ A+++F     +   G   D  T+ +++  L    +   A     R+  E       +
Sbjct: 394 VDDAMLLFSKMRRQ---GLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVV 450

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCE-------PTPKSYITVLAILVEENQLKLAF 140
           F ++  G       L A   +DK +E   E       P    + T+L  L +E  +  A 
Sbjct: 451 FRNLIHG-------LCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAK 503

Query: 141 RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200
             +  M  + +Q  V + N LI   C + G +D A K+   M   G  P+  TY T+ING
Sbjct: 504 NIFDLMVRVDVQRDVITYNTLIDGYCLH-GKVDEAAKLLEGMVLDGVKPNEVTYNTMING 562

Query: 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN 260
            C+ G+I +A  LF++M +K  +P +VTY++++ GL Q++    A  L+  M   G++ +
Sbjct: 563 YCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFD 622

Query: 261 VFTYSSLMDGLCKGGCSSQAMELLQ--------------------MMISKRHR------- 293
           + TY+ ++ GLC+  C+  A+ + Q                    ++   RH        
Sbjct: 623 IGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFA 682

Query: 294 --------PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
                   PN+VTY  ++  L ++G L+E  ++   ++  G   ++ +   ++      G
Sbjct: 683 SLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKG 742

Query: 346 KYQEAANFLDEM 357
           + ++A  +L ++
Sbjct: 743 EVRKAGVYLSKI 754


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 189/366 (51%), Gaps = 7/366 (1%)

Query: 8   KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
           +W+ ++ +     L R   D  KAL  F+  +  +   + H  S++   I          
Sbjct: 64  QWTPQLVNTI---LKRLWNDGPKALQFFNLLS--HHPSYSHHPSSYDHAIDISARLRDSP 118

Query: 68  PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127
               L+ R+   +   T   F  I   Y    +P  A++VF  M +FGC    +S+ T+L
Sbjct: 119 SLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTIL 178

Query: 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
            +L +  ++++A+  ++  +      CV S NV++   C    T + A ++ +EM  RG 
Sbjct: 179 DVLCKSKRVEMAYNLFKVFKGKFRADCV-SYNVMVNGWCLIKRT-NKALEMLKEMVKRGL 236

Query: 188 TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMR 247
           TP+  +Y T++ G  R G+I EA + F EM+ + C   V+TYT++I+G   +  ++ A +
Sbjct: 237 TPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARK 296

Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
           +F+ M  KGV P+V TY++ +  LCK      A+ + + M+ K + PN +TY+ ++ GLC
Sbjct: 297 VFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLC 356

Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
             G+++ A+E + RMK  G +P+   Y  +I  FCD G+  +A +   +M  G   PN  
Sbjct: 357 HRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLD 416

Query: 368 TWSLHI 373
           T+++ I
Sbjct: 417 TYNILI 422



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 167/350 (47%), Gaps = 15/350 (4%)

Query: 119 TPKSYITVLAILVEENQLKLAF-RFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177
           TP+   T+L  L  +    L F     H       P      + I A  ++S ++ +   
Sbjct: 66  TPQLVNTILKRLWNDGPKALQFFNLLSHHPSYSHHPSSYDHAIDISARLRDSPSLRSL-- 123

Query: 178 IFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           ++R    R G TP   T+  +       GK + A ++F  M    C   + ++ ++++ L
Sbjct: 124 VYRMRSARLGPTPK--TFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVL 181

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+SK VE A  LF+  + K    +  +Y+ +++G C    +++A+E+L+ M+ +   PN+
Sbjct: 182 CKSKRVEMAYNLFKVFKGK-FRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNL 240

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
            +Y+T+L G  + G++ EA +    MK +  + D   Y  +I  F   G+ + A    D 
Sbjct: 241 TSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDT 300

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           MV  G+ P+  T+       N  +Q LCK D  + A  ++  M  +    +S+TY+ +I 
Sbjct: 301 MVKKGVLPSVATY-------NAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIR 353

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
             C +G++ ++   +  +  DGC P+  T++ V+    D  ++ +A +L 
Sbjct: 354 GLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLF 403



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           AM    +MK+ GCEP  ++Y  V+    +E ++  A   ++ M      P + + N+LI 
Sbjct: 364 AMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILIS 423

Query: 164 ALC--KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215
           A+   K S  +  A  +  EM +RG  P  +T+  ++NGL   G    AKE+ +
Sbjct: 424 AMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVLNGLLLTGNQGFAKEILR 477


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 211/423 (49%), Gaps = 23/423 (5%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T++ +IS      +   A+ LL++   +     +  +  +   Y +      A
Sbjct: 339 GCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRA 398

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
                +M E G +P   +Y  ++  LV   ++ +A      M E G+ P     N+L+  
Sbjct: 399 SNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSG 458

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LCK    + AA  +  EM ++   PD++ Y TL++G  R G + EA++LF+    K  +P
Sbjct: 459 LCKKF-KLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNP 517

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            +V Y ++I G C+   +++AM     M+ + + P+ FTYS+++DG  K      A ++ 
Sbjct: 518 GIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMF 577

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+  + +PN+VTY++L+NG C++G L  +++I   M+  GL P+   Y  +I  FC  
Sbjct: 578 REMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKE 637

Query: 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK------TDPNRAFQ----- 393
            K  +AA+F +EM++    PN +T+       N +V G  K      ++    FQ     
Sbjct: 638 AKLIDAASFFEEMLMNKCVPNDVTF-------NYLVNGFSKNGTRAISEKGNEFQENKQS 690

Query: 394 VYLSMRNRSIS----VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           ++L+   R IS      S  Y+S++ C C+ G    + ++ +++   GC+PD  ++ A++
Sbjct: 691 MFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALL 750

Query: 450 TAL 452
             +
Sbjct: 751 HGV 753



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 241/478 (50%), Gaps = 25/478 (5%)

Query: 3   VKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSAT-AEYA---NGFRHDNSTFSLMIS 58
           ++T F  S  + S     ++   +DV   L  FD  +  +Y+   NGF      +S ++ 
Sbjct: 48  LQTRFSESEVLASDVAHLVLDRIRDVELGLKFFDWVSRGQYSGPINGF-----AYSSLLK 102

Query: 59  KLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY---GRVHRPLDAMRVFDKMKEFG 115
            L  +  F   E +L+ +  E+   T +    + + Y   G V + L+    +  +K + 
Sbjct: 103 LLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALEL--YYFVLKTYT 160

Query: 116 CEPTPKSYITVLAILVEENQLKLAFRFYRHMREI--GIQPCVASLN--VLIKALCKNSGT 171
             P   +  ++L +LV+  ++++A + Y  M EI      CV + +  +++K LCK  G 
Sbjct: 161 YFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLCK-EGK 219

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
           ++   K+  +   +GC P+   Y TLI+G C+ G +  A  LF E++ K   PTV TY +
Sbjct: 220 LEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGA 279

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +ING C+    +   RL  EM S+G+  NV  Y++++D   K G   +A+E ++ MI   
Sbjct: 280 IINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECG 339

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+IVTY+TL++G C++GK+ EA ++L++   +GL P+   Y  +I  +C  G Y  A+
Sbjct: 340 CKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRAS 399

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411
           N+L EM   G  P+ +T+     +H  VV G    + + A  +   M  R +  D+  Y+
Sbjct: 400 NWLIEMTERGHKPDLVTYG--ALVHGLVVAG----EVDVALTIREKMLERGVFPDAGIYN 453

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
            L++  CKK  +  +  ++ E++    LPD   ++ ++        + +A +L  L +
Sbjct: 454 ILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTI 511



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/459 (26%), Positives = 208/459 (45%), Gaps = 30/459 (6%)

Query: 49  DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108
           DN +  +M+  L    +      L++    + C      + ++  GY +      A  +F
Sbjct: 203 DNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLF 262

Query: 109 DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168
            ++K  G  PT ++Y  ++    ++   K   R    M   G+   V   N +I A  K+
Sbjct: 263 IELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKH 322

Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228
            G +  A +    M   GC PD  TY TLI+G CR GK+ EA +L ++   K   P   +
Sbjct: 323 -GHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFS 381

Query: 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288
           YT LI+  C+    + A     EM  +G +P++ TY +L+ GL   G    A+ + + M+
Sbjct: 382 YTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKML 441

Query: 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348
            +   P+   Y+ L++GLCK+ KL  A  +L  M  Q + PDA +Y  ++  F   G   
Sbjct: 442 ERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLD 501

Query: 349 EAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVV 380
           EA    +  +  G+ P  + ++  I+                             ++TV+
Sbjct: 502 EARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVI 561

Query: 381 QGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
            G  K  D + A +++  M       + +TY+SLI  FC+KGD+H+S +I  E+   G +
Sbjct: 562 DGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLV 621

Query: 440 PDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           P+  T+S ++ +     K+  AA      LMNKCV  +V
Sbjct: 622 PNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDV 660



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 152/363 (41%), Gaps = 58/363 (15%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPA----EDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100
           G + D  T+  ++  LV A +   A    E +L+R       I   +   +C+ +    +
Sbjct: 409 GHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKF----K 464

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160
              A  +  +M +    P    Y T++   +    L  A + +    E G+ P +   N 
Sbjct: 465 LPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNA 524

Query: 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220
           +IK  CK  G M  A      M  R   PD +TY T+I+G  +   +  A+++F+EM   
Sbjct: 525 MIKGYCK-FGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKM 583

Query: 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280
            C P VVTYTSLING C+   +  ++++F EM++ G+ PNV TYS L+   CK      A
Sbjct: 584 KCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDA 643

Query: 281 MELLQMMISKRHRPNIVT------------------------------------------ 298
               + M+  +  PN VT                                          
Sbjct: 644 ASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDG 703

Query: 299 -------YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
                  Y+++L  LC+ G  + A+++ ++M  +G  PD+  +  ++   C  G+ +E  
Sbjct: 704 WAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGRSKEWK 763

Query: 352 NFL 354
           N +
Sbjct: 764 NIV 766



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 131/284 (46%), Gaps = 16/284 (5%)

Query: 53  FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112
           ++ MI         + A   ++R+ K      E  + ++  GY + H    A ++F +M 
Sbjct: 522 YNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMV 581

Query: 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172
           +  C+P   +Y +++     +  L  + + +R M+  G+ P V + ++LI + CK +  +
Sbjct: 582 KMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLI 641

Query: 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG---------KIYEAKE-----LFKEME 218
           DAA   F EM    C P+  T+  L+NG  + G         +  E K+      F  M 
Sbjct: 642 DAA-SFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMI 700

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
           +   +P    Y S++  LCQ      A++L  +M SKG  P+  ++ +L+ G+C  G S 
Sbjct: 701 SDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGRSK 760

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
           +   ++   +++R     V YS++L+    +G   EA  IL  M
Sbjct: 761 EWKNIVSCNLNERELQIAVNYSSILDQYLPQGT-SEASVILQTM 803


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 218/470 (46%), Gaps = 45/470 (9%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T IT + +++ +   K +  A  +    T +   GF  +   ++ +I   + A     A 
Sbjct: 329 TLITYSILVKGLTRAKRIGDAYFVLKEMTKK---GFPPNVIVYNNLIDSFIEAGSLNKAI 385

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           ++ D +  +   +T   + ++ +GY +  +  +A R+  +M   G      S+ +V+ +L
Sbjct: 386 EIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLL 445

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN---------------------- 168
                   A RF   M    + P    L  LI  LCK+                      
Sbjct: 446 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 505

Query: 169 ------------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
                       +G +D AF+I +E+  RGC  D  +Y TLI+G C   K+ EA     E
Sbjct: 506 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE 565

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +   P   TY+ LI GL     VEEA++ +++ +  G+ P+V+TYS ++DG CK   
Sbjct: 566 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 625

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
           + +  E    M+SK  +PN V Y+ L+   C+ G+L  A+E+ + MK +G+ P++  Y  
Sbjct: 626 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 685

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL 396
           +I     I + +EA    +EM + G+ PN   ++        ++ G  K       +  L
Sbjct: 686 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT-------ALIDGYGKLGQMVKVECLL 738

Query: 397 -SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
             M ++++  + +TY+ +I  + + G++ +++R+++E+   G +PD  T+
Sbjct: 739 REMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITY 788



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 187/364 (51%), Gaps = 12/364 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ VF  +   G  P+  +   +L  LV  N+ +     +  + + G+ P V      I 
Sbjct: 210 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAIN 268

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE-METKAC 222
           A CK  G ++ A K+F +M   G  P+  T+ T+I+GL   G+ Y+   +FKE M  +  
Sbjct: 269 AFCK-GGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGR-YDEAFMFKEKMVERGM 326

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT++TY+ L+ GL ++K + +A  + +EM  KG  PNV  Y++L+D   + G  ++A+E
Sbjct: 327 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 386

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +  +M+SK       TY+TL+ G CK G+   A  +L  M   G   + G +  +I   C
Sbjct: 387 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 446

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
               +  A  F+ EM+L  ++P          +  T++ GLCK   + +A +++    N+
Sbjct: 447 SHLMFDSALRFVGEMLLRNMSPGG-------GLLTTLISGLCKHGKHSKALELWFQFLNK 499

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              VD+ T ++L+   C+ G + ++ RI  E++  GC+ D  +++ +++    ++K+ +A
Sbjct: 500 GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEA 559

Query: 462 AELL 465
              L
Sbjct: 560 FMFL 563



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 232/504 (46%), Gaps = 79/504 (15%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGYGRV 98
           G     +T +++++ LV AN+F+   +  D V K    ++ D++L      + C+G G+V
Sbjct: 221 GMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK---GVSPDVYLFTTAINAFCKG-GKV 276

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
               +A+++F KM+E G  P   ++ TV+  L    +   AF F   M E G++P + + 
Sbjct: 277 E---EAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITY 333

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           ++L+K L +     DA F + +EM  +G  P+   Y  LI+     G + +A E+   M 
Sbjct: 334 SILVKGLTRAKRIGDAYF-VLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 392

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS------------ 266
           +K  S T  TY +LI G C++   + A RL +EM S G   N  +++S            
Sbjct: 393 SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 452

Query: 267 -----------------------LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
                                  L+ GLCK G  S+A+EL    ++K    +  T + LL
Sbjct: 453 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 512

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +GLC+ GKL EA  I   +  +G   D   Y  +IS  C   K  EA  FLDEMV  G+ 
Sbjct: 513 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 572

Query: 364 PNRLTWSL----------------------------HIRIHNTVVQGLCKTDPNRAFQVY 395
           P+  T+S+                             +  ++ ++ G CK +     Q +
Sbjct: 573 PDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEF 632

Query: 396 LS-MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M ++++  +++ Y+ LI  +C+ G +  +  + +++   G  P+  T+++++  +  
Sbjct: 633 FDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSI 692

Query: 455 RRKMRQAAELLLLELMNKCVEAEV 478
             ++ + A+LL  E+  + +E  V
Sbjct: 693 ISRVEE-AKLLFEEMRMEGLEPNV 715



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 163/315 (51%), Gaps = 7/315 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           GF  D  T + ++  L  A +   A  +   +    C    ++ +  +S C G  ++   
Sbjct: 500 GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLD-- 557

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A    D+M + G +P   +Y  ++  L   N+++ A +F+   +  G+ P V + +V+
Sbjct: 558 -EAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVM 616

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK   T +   + F EM ++   P++  Y  LI   CR G++  A EL ++M+ K 
Sbjct: 617 IDGCCKAERTEEGQ-EFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 675

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            SP   TYTSLI G+     VEEA  LFEEMR +G+EPNVF Y++L+DG  K G   +  
Sbjct: 676 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 735

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ M SK   PN +TY+ ++ G  ++G + EA  +L+ M+ +G+ PD+  Y + I  +
Sbjct: 736 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 795

Query: 342 CDIGKYQEAANFLDE 356
              G   EA    DE
Sbjct: 796 LKQGGVLEAFKGSDE 810



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 202/425 (47%), Gaps = 10/425 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S+++  L  A +   A  +L  + K+       ++ ++   +        A+ + D M
Sbjct: 332 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 391

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G   T  +Y T++    +  Q   A R  + M  IG      S   +I  LC +   
Sbjct: 392 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHL-M 450

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D+A +   EM  R  +P      TLI+GLC+ GK  +A EL+ +   K       T  +
Sbjct: 451 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 510

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++GLC++  ++EA R+ +E+  +G   +  +Y++L+ G C      +A   L  M+ + 
Sbjct: 511 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG 570

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+  TYS L+ GL    K++EA++  D  K  G+ PD   Y  +I   C   + +E  
Sbjct: 571 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQ 630

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
            F DEM+   + PN +       ++N +++  C++   + A ++   M+++ IS +S TY
Sbjct: 631 EFFDEMMSKNVQPNTV-------VYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY 683

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +SLI        + ++  + +E+ ++G  P+   ++A++       +M +  E LL E+ 
Sbjct: 684 TSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVK-VECLLREMH 742

Query: 471 NKCVE 475
           +K V 
Sbjct: 743 SKNVH 747


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 186/355 (52%), Gaps = 15/355 (4%)

Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
           +P+   Y  +L   + EN+++L    Y+ M    + P   + N+LI  LC +SG ++ A 
Sbjct: 109 QPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLC-DSGHLEDAR 167

Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
           ++F +MP RGC P+ +T+G L+ G CR G   +  EL  +M T    P  V Y +LI+  
Sbjct: 168 ELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSF 227

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ-MMISKR---H 292
           C+     +A +L ++MR  G+ P+V T++S +  LC  G   +A  + + M I +     
Sbjct: 228 CKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLP 287

Query: 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352
            PN++TY  +L G CKEG L+EA  ++D MK      +   Y   +      GK  EA  
Sbjct: 288 HPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWI 347

Query: 353 FLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD--PNRAFQVYLSMRNRSISVDSLTY 410
            L EM+  GI P+       I  +N V+ GLCK     +    + L +RN  I  D++TY
Sbjct: 348 VLKEMLGIGIEPD-------IYSYNIVMDGLCKNGMLSDARMLMGLMIRN-GILPDTVTY 399

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           S+L+  +C KG + ++  ++ E++ + C P+  T + ++ +LW   ++ +A  LL
Sbjct: 400 STLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLL 454



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 194/402 (48%), Gaps = 37/402 (9%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A  + D MK        +SY   L  L+   +L  A+   + M  IGI+P + S N+++
Sbjct: 309 EAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVM 368

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
             LCKN G +  A  +   M   G  PD+ TY TL++G C  GK++EA  L  EM +  C
Sbjct: 369 DGLCKN-GMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNC 427

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
           SP   T   L++ L +   + EA  L ++M  KG   +  T + +++ LC  G   +A+E
Sbjct: 428 SPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIE 487

Query: 283 LLQMMIS-----------------------KRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319
           ++  M +                       K+  P++VTYST+++GLCK G+L +A +  
Sbjct: 488 IVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKF 547

Query: 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379
             M  +GL+PD+ +Y   I  FC  GK   A   L +M   G           ++ +N++
Sbjct: 548 IEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKT-------LQTYNSL 600

Query: 380 VQGLCKTDPNRAFQVYL---SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436
           + GL     N+ F++Y     MR + +S D  TY+ ++ C C+ G I+ +  ++DE++  
Sbjct: 601 ILGL--GSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQK 658

Query: 437 GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
           G  P+  ++  ++ A       + + E+  + L N C   E 
Sbjct: 659 GISPNISSFRILIKAFCKACDFKASHEVFEIAL-NVCGHKEA 699



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 226/499 (45%), Gaps = 80/499 (16%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           TF+L+I  L  +     A +L D++    C+  E  F  + RGY R       + +  +M
Sbjct: 149 TFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQM 208

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
           +  G  P    Y T+++   +E +   A +    MRE G+ P V + N  I ALC  SG 
Sbjct: 209 RTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALC-GSGK 267

Query: 172 MDAAFKIFREM--------PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
           +  A +IFR+M        P+    P+  TY  ++ G C+ G + EAK L   M+  A  
Sbjct: 268 ILEASRIFRDMQIDEELGLPH----PNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANF 323

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
             + +Y   + GL ++  + EA  + +EM   G+EP++++Y+ +MDGLCK G  S A  L
Sbjct: 324 INLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARML 383

Query: 284 LQMMISKRHRPNIVTYSTLLNGLC-----------------------------------K 308
           + +MI     P+ VTYSTLL+G C                                   K
Sbjct: 384 MGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWK 443

Query: 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM------VLGGI 362
           EG++ EA  +L +M  +G   D      II+  C+ G+  +A   ++ M       LG +
Sbjct: 444 EGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNL 503

Query: 363 -----------------TPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSIS 404
                            TP+ +T+S       T++ GLCK    + A + ++ M ++ + 
Sbjct: 504 GNSFIGLVDDTISGKKCTPDLVTYS-------TIISGLCKAGRLDDAKKKFIEMMSKGLQ 556

Query: 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            DS  Y + I  FC++G I  + +++ ++   GC     T+++++  L  + ++ +    
Sbjct: 557 PDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYG- 615

Query: 465 LLLELMNKCVEAEVDIQNQ 483
           L+ E+  K V  +V   N 
Sbjct: 616 LIDEMREKGVSPDVCTYNH 634



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 161/350 (46%), Gaps = 40/350 (11%)

Query: 161 LIKALCKNSGTMDAAFKIFREM----PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           L+  L K SG  + A   F+ +    P +   P  Y Y  L+    R  ++     L+K+
Sbjct: 81  LVTVLAK-SGFFNKAISHFKSLRSNFPEK--QPSIYLYNVLLKSCIRENRVELVSWLYKD 137

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M     SP   T+  LI  LC S  +E+A  LF++M ++G EPN FT+  L+ G C+ G 
Sbjct: 138 MVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGL 197

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
           +S+ +ELL  M +    PN V Y+TL++  CKEGK  +A +++D+M+  GL P    +  
Sbjct: 198 ASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNS 257

Query: 337 IISCFCDIGKYQEAANFLDEMV----LGGITPNRLTWSL--------------------- 371
            IS  C  GK  EA+    +M     LG   PN +T+ L                     
Sbjct: 258 RISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTM 317

Query: 372 -------HIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                  ++  +N  + GL +      A+ V   M    I  D  +Y+ ++   CK G +
Sbjct: 318 KRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGML 377

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473
             +  ++  ++ +G LPD  T+S ++     + K+ +A  LL   + N C
Sbjct: 378 SDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNC 427



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 178/418 (42%), Gaps = 43/418 (10%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD---ITEDIFLSICRGYGRVHR 100
           NG   D  T+S ++    S  +   A +LL  +    C     T ++ L      GR+  
Sbjct: 390 NGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRIS- 448

Query: 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG---------- 150
             +A  +  KM E G      +   ++  L    QL  A      M   G          
Sbjct: 449 --EAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNS 506

Query: 151 -------------IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
                          P + + + +I  LCK +G +D A K F EM ++G  PDS  Y T 
Sbjct: 507 FIGLVDDTISGKKCTPDLVTYSTIISGLCK-AGRLDDAKKKFIEMMSKGLQPDSAIYDTF 565

Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
           I+  CR GKI  A ++ K+ME + C+ T+ TY SLI GL     + E   L +EMR KGV
Sbjct: 566 IHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGV 625

Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317
            P+V TY+ +++ LC+GG  + A  +L  M+ K   PNI ++  L+   CK    + + E
Sbjct: 626 SPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHE 685

Query: 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377
           + + + L        LY  + +     GK  EA    +       T    ++ +   ++ 
Sbjct: 686 VFE-IALNVCGHKEALYTLMFNELLVGGKVAEAKELFE-------TALDRSFDIGNFLYK 737

Query: 378 TVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
            ++  LCK +    A  V   + ++    D  ++  +I  F K G+ H    + DEL 
Sbjct: 738 DLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKH----VADELA 791



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 2/253 (0%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
           + G + D++ +   I       +   A  +L  + K  C+ T   + S+  G G  ++  
Sbjct: 552 SKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIF 611

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +   + D+M+E G  P   +Y  +L  L E  ++  A      M + GI P ++S  +LI
Sbjct: 612 ELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILI 671

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           KA CK +    A+ ++F E+    C      Y  + N L   GK+ EAKELF+    ++ 
Sbjct: 672 KAFCK-ACDFKASHEVF-EIALNVCGHKEALYTLMFNELLVGGKVAEAKELFETALDRSF 729

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
                 Y  LI+ LC+ + +E A  +   +  KG + +  ++  ++DG  K G    A E
Sbjct: 730 DIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVADE 789

Query: 283 LLQMMISKRHRPN 295
           L + M+      N
Sbjct: 790 LAERMMEMASESN 802


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 218/470 (46%), Gaps = 45/470 (9%)

Query: 11  TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
           T IT + +++ +   K +  A  +    T +   GF  +   ++ +I   + A     A 
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKK---GFPPNVIVYNNLIDSFIEAGSLNKAI 398

Query: 71  DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
           ++ D +  +   +T   + ++ +GY +  +  +A R+  +M   G      S+ +V+ +L
Sbjct: 399 EIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLL 458

Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN---------------------- 168
                   A RF   M    + P    L  LI  LCK+                      
Sbjct: 459 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 518

Query: 169 ------------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
                       +G +D AF+I +E+  RGC  D  +Y TLI+G C   K+ EA     E
Sbjct: 519 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE 578

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M  +   P   TY+ LI GL     VEEA++ +++ +  G+ P+V+TYS ++DG CK   
Sbjct: 579 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 638

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
           + +  E    M+SK  +PN V Y+ L+   C+ G+L  A+E+ + MK +G+ P++  Y  
Sbjct: 639 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 698

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYL 396
           +I     I + +EA    +EM + G+ PN   ++        ++ G  K       +  L
Sbjct: 699 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT-------ALIDGYGKLGQMVKVECLL 751

Query: 397 -SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
             M ++++  + +TY+ +I  + + G++ +++R+++E+   G +PD  T+
Sbjct: 752 REMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITY 801



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 187/364 (51%), Gaps = 12/364 (3%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+ VF  +   G  P+  +   +L  LV  N+ +     +  + + G+ P V      I 
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAIN 281

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE-METKAC 222
           A CK  G ++ A K+F +M   G  P+  T+ T+I+GL   G+ Y+   +FKE M  +  
Sbjct: 282 AFCK-GGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGR-YDEAFMFKEKMVERGM 339

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
            PT++TY+ L+ GL ++K + +A  + +EM  KG  PNV  Y++L+D   + G  ++A+E
Sbjct: 340 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 399

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           +  +M+SK       TY+TL+ G CK G+   A  +L  M   G   + G +  +I   C
Sbjct: 400 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 459

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLSMRNR 401
               +  A  F+ EM+L  ++P          +  T++ GLCK   + +A +++    N+
Sbjct: 460 SHLMFDSALRFVGEMLLRNMSPGG-------GLLTTLISGLCKHGKHSKALELWFQFLNK 512

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              VD+ T ++L+   C+ G + ++ RI  E++  GC+ D  +++ +++    ++K+ +A
Sbjct: 513 GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEA 572

Query: 462 AELL 465
              L
Sbjct: 573 FMFL 576



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 232/504 (46%), Gaps = 79/504 (15%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL------SICRGYGRV 98
           G     +T +++++ LV AN+F+   +  D V K    ++ D++L      + C+G G+V
Sbjct: 234 GMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK---GVSPDVYLFTTAINAFCKG-GKV 289

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
               +A+++F KM+E G  P   ++ TV+  L    +   AF F   M E G++P + + 
Sbjct: 290 E---EAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITY 346

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           ++L+K L +     DA F + +EM  +G  P+   Y  LI+     G + +A E+   M 
Sbjct: 347 SILVKGLTRAKRIGDAYF-VLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 405

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS------------ 266
           +K  S T  TY +LI G C++   + A RL +EM S G   N  +++S            
Sbjct: 406 SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 465

Query: 267 -----------------------LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
                                  L+ GLCK G  S+A+EL    ++K    +  T + LL
Sbjct: 466 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 525

Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
           +GLC+ GKL EA  I   +  +G   D   Y  +IS  C   K  EA  FLDEMV  G+ 
Sbjct: 526 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 585

Query: 364 PNRLTWSL----------------------------HIRIHNTVVQGLCKTDPNRAFQVY 395
           P+  T+S+                             +  ++ ++ G CK +     Q +
Sbjct: 586 PDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEF 645

Query: 396 L-SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454
              M ++++  +++ Y+ LI  +C+ G +  +  + +++   G  P+  T+++++  +  
Sbjct: 646 FDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSI 705

Query: 455 RRKMRQAAELLLLELMNKCVEAEV 478
             ++ + A+LL  E+  + +E  V
Sbjct: 706 ISRVEE-AKLLFEEMRMEGLEPNV 728



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 163/315 (51%), Gaps = 7/315 (2%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRP 101
           GF  D  T + ++  L  A +   A  +   +    C    ++ +  +S C G  ++   
Sbjct: 513 GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLD-- 570

Query: 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
            +A    D+M + G +P   +Y  ++  L   N+++ A +F+   +  G+ P V + +V+
Sbjct: 571 -EAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVM 629

Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
           I   CK   T +   + F EM ++   P++  Y  LI   CR G++  A EL ++M+ K 
Sbjct: 630 IDGCCKAERTEEGQ-EFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 688

Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
            SP   TYTSLI G+     VEEA  LFEEMR +G+EPNVF Y++L+DG  K G   +  
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 748

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
            LL+ M SK   PN +TY+ ++ G  ++G + EA  +L+ M+ +G+ PD+  Y + I  +
Sbjct: 749 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 808

Query: 342 CDIGKYQEAANFLDE 356
              G   EA    DE
Sbjct: 809 LKQGGVLEAFKGSDE 823



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 202/425 (47%), Gaps = 10/425 (2%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+S+++  L  A +   A  +L  + K+       ++ ++   +        A+ + D M
Sbjct: 345 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 404

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              G   T  +Y T++    +  Q   A R  + M  IG      S   +I  LC +   
Sbjct: 405 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHL-M 463

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D+A +   EM  R  +P      TLI+GLC+ GK  +A EL+ +   K       T  +
Sbjct: 464 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 523

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           L++GLC++  ++EA R+ +E+  +G   +  +Y++L+ G C      +A   L  M+ + 
Sbjct: 524 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG 583

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
            +P+  TYS L+ GL    K++EA++  D  K  G+ PD   Y  +I   C   + +E  
Sbjct: 584 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQ 643

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTY 410
            F DEM+   + PN +       ++N +++  C++   + A ++   M+++ IS +S TY
Sbjct: 644 EFFDEMMSKNVQPNTV-------VYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY 696

Query: 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
           +SLI        + ++  + +E+ ++G  P+   ++A++       +M +  E LL E+ 
Sbjct: 697 TSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVK-VECLLREMH 755

Query: 471 NKCVE 475
           +K V 
Sbjct: 756 SKNVH 760


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 219/469 (46%), Gaps = 43/469 (9%)

Query: 29  NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDR-VNKEKCDITEDI 87
            +AL + D     +  G +    ++++++S L  A+    A  L  R V++++   T   
Sbjct: 120 GRALHLLDQLPRRF--GVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFT 177

Query: 88  FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
           F    R   R+ R  +A+ +   M   GC P    Y TV+  L ++  +  A      M 
Sbjct: 178 FGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEML 237

Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL--- 204
            +G    V + + +++ +C   G +  A ++   M  +GC P   TYG L+ GLCR+   
Sbjct: 238 LMGCAADVNTFDDVVRGMC-GLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 296

Query: 205 ----------------------------GKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
                                       GK+ EA EL++ M  K C P   TY+ L++GL
Sbjct: 297 DEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGL 356

Query: 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
           C+   +  A+RL  EM  KG  PNV TY+ ++   CK G       LL+ M +K    N 
Sbjct: 357 CKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNS 416

Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356
             Y+ ++  LCK+G++ EA+ ++  M+ QG  PD   Y  II   C+  + +EA +  + 
Sbjct: 417 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN 476

Query: 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLIT 415
           ++  G+  N +T+       NT++  L +      A ++   M     S+D ++Y+ LI 
Sbjct: 477 LLEEGVVANGITY-------NTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIK 529

Query: 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
             CK G++ +S  +++E+   G  P+  +++ +++ L   R++R A EL
Sbjct: 530 AMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALEL 578



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 219/452 (48%), Gaps = 18/452 (3%)

Query: 36  DSATAEYANGFRH----DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91
           D A A      RH    D   +  +I  L        A  LL+ +    C    + F  +
Sbjct: 192 DEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDV 251

Query: 92  CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151
            RG   + R  +A R+ D+M   GC P   +Y  +L  L    Q   A      + E+  
Sbjct: 252 VRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN- 310

Query: 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211
              V   N +I   C   G +  A +++  M  +GC PD++TY  L++GLC+LG+I  A 
Sbjct: 311 ---VVLFNTVIGG-CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAV 366

Query: 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271
            L +EME K  +P VVTYT +++  C++   ++   L EEM +KG+  N   Y+ ++  L
Sbjct: 367 RLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYAL 426

Query: 272 CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
           CK G   +AM L+Q M S+   P+I +Y+T++  LC   +++EA  + + +  +G+  + 
Sbjct: 427 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 486

Query: 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-TDPNR 390
             Y  II      G++Q+A     EM+L G        SL +  +N +++ +CK  + +R
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGC-------SLDVVSYNGLIKAMCKDGNVDR 539

Query: 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450
           +  +   M  + I  ++++Y+ LI+  CK+  +  +  +  +++  G  PD  T++ ++ 
Sbjct: 540 SLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLIN 599

Query: 451 ALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
            L     M  AA  LL +L N+ V  ++   N
Sbjct: 600 GLCKMGWM-HAALNLLEKLHNENVHPDIITYN 630



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 190/369 (51%), Gaps = 13/369 (3%)

Query: 52  TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111
           T+  ++  L    Q   A  +L RV  E   +  +  +  C   G++    +A  +++ M
Sbjct: 282 TYGFLLQGLCRVRQADEARAMLGRV-PELNVVLFNTVIGGCLAEGKL---AEATELYETM 337

Query: 112 KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171
              GC+P   +Y  ++  L +  ++  A R  R M + G  P V +  +++ + CKN G 
Sbjct: 338 GLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKN-GM 396

Query: 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231
            D    +  EM  +G T +S  Y  +I  LC+ G++ EA  L +EM ++ C+P + +Y +
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNT 456

Query: 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291
           +I  LC ++ +EEA  +FE +  +GV  N  TY++++  L + G    A+ L + MI   
Sbjct: 457 IIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG 516

Query: 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAA 351
              ++V+Y+ L+  +CK+G +  ++ +L+ M  +G+KP+   Y  +IS  C   + ++A 
Sbjct: 517 CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL 576

Query: 352 NFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTY 410
               +M+  G+ P+ +T+       NT++ GLCK    + A  +   + N ++  D +TY
Sbjct: 577 ELSKQMLNQGLAPDIVTY-------NTLINGLCKMGWMHAALNLLEKLHNENVHPDIITY 629

Query: 411 SSLITCFCK 419
           + LI+  CK
Sbjct: 630 NILISWHCK 638



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 163/354 (46%), Gaps = 45/354 (12%)

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLG 205
           R  G+QP   S NV++  L +     DA   ++R M +R    P ++T+G     LCRLG
Sbjct: 131 RRFGVQPSFRSYNVVLSVLARADCHADA-LALYRRMVHRDRVPPTTFTFGVAARALCRLG 189

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           +  EA  L + M    C P  V Y ++I+ LC    V EA  L  EM   G   +V T+ 
Sbjct: 190 RADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFD 249

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK----------------- 308
            ++ G+C  G   +A  L+  M++K   P ++TY  LL GLC+                 
Sbjct: 250 DVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL 309

Query: 309 --------------EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
                         EGKL EA E+ + M L+G +PDA  Y  ++   C +G+   A   L
Sbjct: 310 NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 369

Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT---DPNRAFQVYLSMRNRSISVDSLTYS 411
            EM   G  PN +T+++       V+   CK    D  RA      M  + ++++S  Y+
Sbjct: 370 REMEKKGFAPNVVTYTI-------VLHSFCKNGMWDDTRAL--LEEMSAKGLTLNSQGYN 420

Query: 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
            +I   CK G + ++  ++ E+   GC PD  +++ ++  L +  +M +A  + 
Sbjct: 421 GMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMF 474



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 1/311 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T+S+++  L    +   A  LL  + K+        +  +   + +     D 
Sbjct: 341 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 400

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
             + ++M   G     + Y  ++  L ++ ++  A    + MR  G  P + S N +I  
Sbjct: 401 RALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYH 460

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           LC N   M+ A  +F  +   G   +  TY T+I+ L R G+  +A  L KEM    CS 
Sbjct: 461 LCNNE-QMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSL 519

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
            VV+Y  LI  +C+  +V+ ++ L EEM  KG++PN  +Y+ L+  LCK      A+EL 
Sbjct: 520 DVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELS 579

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344
           + M+++   P+IVTY+TL+NGLCK G +  A+ +L+++  + + PD   Y  +IS  C +
Sbjct: 580 KQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKV 639

Query: 345 GKYQEAANFLD 355
               +AA  L+
Sbjct: 640 RLLDDAAMLLN 650



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 146/277 (52%), Gaps = 1/277 (0%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           GF  +  T+++++        +     LL+ ++ +   +    +  +     +  R  +A
Sbjct: 376 GFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEA 435

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           M +  +M+  GC P   SY T++  L    Q++ A   + ++ E G+     + N +I A
Sbjct: 436 MGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHA 495

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
           L ++ G    A ++ +EM   GC+ D  +Y  LI  +C+ G +  +  L +EM  K   P
Sbjct: 496 LLRD-GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKP 554

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             V+Y  LI+ LC+ + V +A+ L ++M ++G+ P++ TY++L++GLCK G    A+ LL
Sbjct: 555 NNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLL 614

Query: 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321
           + + ++   P+I+TY+ L++  CK   L +A  +L+R
Sbjct: 615 EKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNR 651



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 14/184 (7%)

Query: 43  ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT----EDIFLSICRGYGRV 98
           ANG      T++ +I  L+   +++ A  L   +    C +       +  ++C+  G V
Sbjct: 484 ANGI-----TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKD-GNV 537

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
            R   ++ + ++M E G +P   SY  +++ L +E +++ A    + M   G+ P + + 
Sbjct: 538 DR---SLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTY 594

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N LI  LCK  G M AA  +  ++ N    PD  TY  LI+  C++  + +A  L     
Sbjct: 595 NTLINGLCK-MGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAM 653

Query: 219 TKAC 222
              C
Sbjct: 654 AAVC 657



 Score = 38.9 bits (89), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 350 AANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS-ISVDS 407
           A + LD++      P R       R +N V+  L + D +  A  +Y  M +R  +   +
Sbjct: 122 ALHLLDQL------PRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTT 175

Query: 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467
            T+       C+ G   ++  ++  +   GC+PD   +  V+ AL D+  + +AA LL  
Sbjct: 176 FTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNE 235

Query: 468 ELMNKCV 474
            L+  C 
Sbjct: 236 MLLMGCA 242


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 198/427 (46%), Gaps = 31/427 (7%)

Query: 46  FRHDNSTFSLMISKLVSANQFRPAEDLLDRV--------------------NKEKCDITE 85
           FRH   ++  MI  L +   F  A+ L+  V                      ++ DI  
Sbjct: 15  FRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIY- 73

Query: 86  DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145
            +F  +   Y       DA+  +   +E        +   VL  L++    KL + FY  
Sbjct: 74  -VFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEE 132

Query: 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205
           + E G    +   N+L+   CK+ G +  A  +F  +   G  P   +Y TL+NG  RLG
Sbjct: 133 ILECGYPASLYFFNILMHRFCKD-GDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLG 191

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
            + E   L   M      P V TY+ LINGL +   +++   LF+EM  KG+ PN  T++
Sbjct: 192 XLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFT 251

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           +L+DG CK G    AME+ + M+S+   P+ +TY+TL  GLCK+G L +A  ++D M ++
Sbjct: 252 TLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMK 311

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385
           GLKPD   Y  +I   C  G    A      M+   I  + + ++        ++ GLC+
Sbjct: 312 GLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYT-------ALISGLCQ 364

Query: 386 TDPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444
              +  A ++   M +  +  D  TY+ +I  FCKKGD+ K  + + E+  +G +P   T
Sbjct: 365 EGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVT 424

Query: 445 WSAVMTA 451
           ++ +M  
Sbjct: 425 YNVLMNG 431



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 124/254 (48%), Gaps = 8/254 (3%)

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
            ++E+       ++  +  L++  C+   +  A  +F+ +   G+ P V +Y++LM+G  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYI 188

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           + G   +   L   M +   +P++ TYS L+NGL KE  + +  E+ D M  +GL P++ 
Sbjct: 189 RLGXLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSV 248

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRA 391
            +  +I   C  G+   A     +M+   + P+ +T+       NT+  GLCK  D N+A
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITY-------NTLXYGLCKKGDLNQA 301

Query: 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451
             +   M  + +  D  TY++LI   CK+GD+  +      ++ +    D+  ++A+++ 
Sbjct: 302 HGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISG 361

Query: 452 LWDRRKMRQAAELL 465
           L    +   A ++L
Sbjct: 362 LCQEGRSXDAEKML 375


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 204/407 (50%), Gaps = 20/407 (4%)

Query: 44  NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103
           N     NS+ SL+ S+ V    F+ A  L  + N    +I       +  GY   +   +
Sbjct: 181 NALVRSNSSHSLVFSREV----FQDAVKLGVQPNVNTFNI-------LIHGYCSDNNTEE 229

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A+R+ ++M E+GC P   +Y TVL  L + +QL         M+  G+ P   + N+L+ 
Sbjct: 230 ALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVH 289

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
             CK     +AA ++   M  +G  PD +TY T++ GLC  GKI EA  L  +ME+    
Sbjct: 290 GYCKLKWLKEAA-EVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLV 348

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTY +LI+G  + +  + A +L EEM+++GV+ N  T++ ++   C  G   +A  +
Sbjct: 349 PDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNV 408

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           +  M+     P+  TY+T++NG CK GK+ EA +++D M  +GLK D      ++   C 
Sbjct: 409 MVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCL 468

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRS 402
             +  +A     +    G   + +T+        T++ G  K +  +RA +++  M+   
Sbjct: 469 EKQLDDAYTLTMKARKRGYILDEVTYG-------TLIMGYFKDEQADRALKLWEEMKETG 521

Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449
           I    +TY+++I   C  G   ++   ++EL+  G +PDE T + ++
Sbjct: 522 IVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIII 568



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 194/369 (52%), Gaps = 12/369 (3%)

Query: 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ---LKLAFRFYRHMREIGIQPCVA 156
           +P    ++F+KMK     P   +  T+L  LV  N    L  +   ++   ++G+QP V 
Sbjct: 153 QPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVN 212

Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216
           + N+LI   C ++ T + A ++  +M   GC PD+ TY T++  LC+  ++ + ++L  +
Sbjct: 213 TFNILIHGYCSDNNT-EEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQ 271

Query: 217 METKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276
           M+     P   TY  L++G C+ K ++EA  + E M  KG+ P+V+TY++++ GLC  G 
Sbjct: 272 MKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGK 331

Query: 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336
             +A+ L   M S +  P++VTY+TL++G  +      A ++++ MK +G+K +   +  
Sbjct: 332 IDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNI 391

Query: 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVY 395
           +I  FC  GK  EA+N + +MV  G +P+  T+       NT++ G CK      A+++ 
Sbjct: 392 MIKWFCTEGKIDEASNVMVKMVESGFSPDCFTY-------NTMINGYCKAGKMAEAYKMM 444

Query: 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455
             M  + + +D+ T ++L+   C +  +  +  +  +    G + DE T+  ++   +  
Sbjct: 445 DEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKD 504

Query: 456 RKMRQAAEL 464
            +  +A +L
Sbjct: 505 EQADRALKL 513



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 194/384 (50%), Gaps = 14/384 (3%)

Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
           +A+R+ DKM+ F   P   +Y T++    E      AF+    M+  G++    + N++I
Sbjct: 334 EAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMI 393

Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
           K  C   G +D A  +  +M   G +PD +TY T+ING C+ GK+ EA ++  EM  K  
Sbjct: 394 KWFC-TEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGL 452

Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
                T  +L++ +C  K +++A  L  + R +G   +  TY +L+ G  K   + +A++
Sbjct: 453 KLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALK 512

Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
           L + M        I+TY+T++ GLC  GK  +AV+ L+ +  +GL PD      II  +C
Sbjct: 513 LWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYC 572

Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
             G  ++A  F ++MV   + P+  T        N +++GLC+     +   ++ +  ++
Sbjct: 573 WEGAVEKAFQFHNKMVEHSLKPDIFTC-------NILLRGLCREGMLEKGLTLFNTWISK 625

Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
              +D++TY+ +I+ FCK+  +  +  ++ E+      PD  T++A++T L    +  +A
Sbjct: 626 GKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEA 685

Query: 462 AELLLLELMNKCVEAEVDIQNQDV 485
            +L L     K  E    ++ QD 
Sbjct: 686 EKLAL-----KFAEKGQQVKTQDT 704



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 148/305 (48%), Gaps = 12/305 (3%)

Query: 45  GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
           G + D  T + ++  +    Q   A  L  +  K    + E  + ++  GY +  +   A
Sbjct: 451 GLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRA 510

Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164
           ++++++MKE G   T  +Y T++  L    +   A      + E G+ P  ++ N++I  
Sbjct: 511 LKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHG 570

Query: 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224
            C   G ++ AF+   +M      PD +T   L+ GLCR G + +   LF    +K    
Sbjct: 571 YCW-EGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPM 629

Query: 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284
             VTY  +I+  C+ + +E+A  L  EM  K +EP+ +TY++++ GL K G + +A +L 
Sbjct: 630 DTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLA 689

Query: 285 -------QMMISKRHRPNIVT----YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
                  Q + ++   P + T    YS  ++ LC +GK ++A+++  + + +G+  +   
Sbjct: 690 LKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYT 749

Query: 334 YGKII 338
           Y K++
Sbjct: 750 YIKLM 754



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 113/231 (48%), Gaps = 11/231 (4%)

Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ---AMELLQMMISKRHRPN 295
           SK      ++F +M+     PN+ T ++L++ L +   S     + E+ Q  +    +PN
Sbjct: 151 SKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPN 210

Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355
           + T++ L++G C +   +EA+ ++++M   G  PD   Y  +++  C   +  +  + L 
Sbjct: 211 VNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLL 270

Query: 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLI 414
           +M   G+ PNR T+       N +V G CK      A +V   M  + +  D  TY++++
Sbjct: 271 QMKNSGLFPNRNTY-------NILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMV 323

Query: 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
              C +G I ++ R+ D++     +PD  T++ ++   ++ R    A +L+
Sbjct: 324 RGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLV 374



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 48/193 (24%)

Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV---EIL-DRMKLQGLKPDAGLYGKI 337
           ++   M   R RPN++T +TLLN L +       V   E+  D +KL G++P+   +  +
Sbjct: 159 QIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKL-GVQPNVNTFNIL 217

Query: 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLS 397
           I  +C     +EA   +++M   G  P                                 
Sbjct: 218 IHGYCSDNNTEEALRLINQMGEYGCCP--------------------------------- 244

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
                   D++TY++++T  CK+  + +   ++ ++   G  P+  T++ ++      + 
Sbjct: 245 --------DNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKW 296

Query: 458 MRQAAELLLLELM 470
           +++AAE  ++ELM
Sbjct: 297 LKEAAE--VIELM 307


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 183/349 (52%), Gaps = 6/349 (1%)

Query: 27  DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86
           ++ KAL   D   A+   GF+ D  ++  +I+ L    + +    LL ++          
Sbjct: 142 EIKKALYFHDQLVAQ---GFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVV 198

Query: 87  IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
           ++ +I     +     DA  V+ +M   G  P   +Y T++        LK AF     M
Sbjct: 199 MYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEM 258

Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCRLG 205
           +   I P V + N+LI AL K  G M  A KI   +  + C  PD +TY +LI+G   + 
Sbjct: 259 KLKNINPNVCTFNILIDALSK-EGKMKEA-KILLAVMMKACIKPDVFTYNSLIDGYFLVD 316

Query: 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS 265
           ++  AK +F  M  +  +P V  YT++INGLC++K V+EAM LFEEM+ K + P++ TY+
Sbjct: 317 EVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYN 376

Query: 266 SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
           SL+DGLCK     +A+ L + M  +  +P++ +Y+ LL+GLCK G+L++A EI  R+  +
Sbjct: 377 SLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAK 436

Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374
           G   +   Y  +I+  C  G + EA +   +M   G  P+ +T+ + IR
Sbjct: 437 GYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIR 485



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 187/368 (50%), Gaps = 10/368 (2%)

Query: 99  HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASL 158
           H P   + +F + +  G  P   +   ++     +  + LAF  + ++ + G  P   +L
Sbjct: 72  HYP-TVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITL 130

Query: 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
           N LIK LC   G +  A     ++  +G   D  +YGTLINGLC+ G+      L +++E
Sbjct: 131 NTLIKGLCFR-GEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLE 189

Query: 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278
             +  P VV Y ++IN LC++K + +A  ++ EM  KG+ P+V TY++L+ G C  G   
Sbjct: 190 GHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLK 249

Query: 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
           +A  LL  M  K   PN+ T++ L++ L KEGK++EA  +L  M    +KPD   Y  +I
Sbjct: 250 EAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLI 309

Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLS 397
             +  + + + A      M   G+TP+       ++ +  ++ GLCKT   + A  ++  
Sbjct: 310 DGYFLVDEVKHAKYVFYSMAQRGVTPD-------VQCYTNMINGLCKTKMVDEAMSLFEE 362

Query: 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457
           M+++++  D +TY+SLI   CK   + ++  +   +   G  PD  +++ ++  L    +
Sbjct: 363 MKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGR 422

Query: 458 MRQAAELL 465
           +  A E+ 
Sbjct: 423 LEDAKEIF 430



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 189/398 (47%), Gaps = 44/398 (11%)

Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
           A  VF  + + G  P   +  T++  L    ++K A  F+  +   G Q    S   LI 
Sbjct: 111 AFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLIN 170

Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
            LCK +G   A  ++ R++      PD   Y T+IN LC+   + +A +++ EM  K  S
Sbjct: 171 GLCK-TGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGIS 229

Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
           P VVTYT+LI+G C    ++EA  L  EM+ K + PNV T++ L+D L K G   +A  L
Sbjct: 230 PDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKIL 289

Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
           L +M+    +P++ TY++L++G     +++ A  +   M  +G+ PD   Y  +I+  C 
Sbjct: 290 LAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCK 349

Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
                EA +  +EM    + P+ +T+       N+++ GLCK     RA  +   M+ + 
Sbjct: 350 TKMVDEAMSLFEEMKHKNMIPDIVTY-------NSLIDGLCKNHHLERAIALCKRMKEQG 402

Query: 403 ISVDSLTYSSLITCFCKKG-------------------DIHKSARIVDEL--------VL 435
           I  D  +Y+ L+   CK G                   ++H    +++ L         L
Sbjct: 403 IQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEAL 462

Query: 436 D--------GCLPDEGTWSAVMTALWDRRKMRQAAELL 465
           D        GC+PD  T+  ++ AL+++ +  +A ++L
Sbjct: 463 DLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKIL 500



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 158/341 (46%), Gaps = 30/341 (8%)

Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
           P     N ++ +L  N         +F++    G TPD  T   LIN  C    I  A  
Sbjct: 55  PPTFHFNNILSSLVNNKH-YPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFS 113

Query: 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272
           +F  +  +   P  +T  +LI GLC    +++A+   +++ ++G + +  +Y +L++GLC
Sbjct: 114 VFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLC 173

Query: 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332
           K G +     LL+ +     +P++V Y+T++N LCK   L +A ++   M ++G+ PD  
Sbjct: 174 KTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVV 233

Query: 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR------------------ 374
            Y  +I  FC +G  +EA + L+EM L  I PN  T+++ I                   
Sbjct: 234 TYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVM 293

Query: 375 ----------IHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423
                      +N+++ G    D    A  V+ SM  R ++ D   Y+++I   CK   +
Sbjct: 294 MKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMV 353

Query: 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
            ++  + +E+     +PD  T+++++  L     + +A  L
Sbjct: 354 DEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIAL 394



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 82/186 (44%), Gaps = 8/186 (4%)

Query: 280 AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339
           A+    +M+  R  P    ++ +L+ L         + +  + +  G+ PD      +I+
Sbjct: 41  AVASFNLMLLMRPPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILIN 100

Query: 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSM 398
           CFC       A +    ++  G  PN +T        NT+++GLC + +  +A   +  +
Sbjct: 101 CFCHQAHITLAFSVFANILKRGFHPNAITL-------NTLIKGLCFRGEIKKALYFHDQL 153

Query: 399 RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM 458
             +   +D ++Y +LI   CK G+    AR++ +L      PD   ++ ++ +L   + +
Sbjct: 154 VAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLL 213

Query: 459 RQAAEL 464
             A ++
Sbjct: 214 GDACDV 219


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,914,676,165
Number of Sequences: 23463169
Number of extensions: 265016546
Number of successful extensions: 823198
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8437
Number of HSP's successfully gapped in prelim test: 4512
Number of HSP's that attempted gapping in prelim test: 595577
Number of HSP's gapped (non-prelim): 74049
length of query: 485
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 338
effective length of database: 8,910,109,524
effective search space: 3011617019112
effective search space used: 3011617019112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)