Query 011463
Match_columns 485
No_of_seqs 662 out of 2777
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 01:38:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.5E-65 3.2E-70 501.1 55.3 399 2-416 397-798 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.8E-64 4E-69 493.5 56.9 453 13-480 371-850 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.3E-61 2.7E-66 482.7 44.1 437 12-470 152-617 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.1E-59 2.3E-64 458.0 47.7 433 14-471 89-523 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 7.9E-59 1.7E-63 462.7 48.8 432 13-472 254-687 (857)
6 PLN03081 pentatricopeptide (PP 100.0 7.1E-59 1.5E-63 452.3 46.6 438 10-475 121-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-30 1.1E-34 262.4 53.6 435 15-474 434-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-29 4.8E-34 257.7 54.4 435 11-470 464-899 (899)
9 KOG4626 O-linked N-acetylgluco 100.0 1.4E-24 3.1E-29 190.2 34.0 438 15-477 51-491 (966)
10 PRK11447 cellulose synthase su 100.0 6.2E-23 1.3E-27 210.5 50.3 429 18-471 275-740 (1157)
11 PRK11447 cellulose synthase su 99.9 7E-22 1.5E-26 202.8 54.4 448 11-473 61-702 (1157)
12 TIGR00990 3a0801s09 mitochondr 99.9 3.2E-22 6.9E-27 192.9 47.3 407 16-436 131-571 (615)
13 PRK15174 Vi polysaccharide exp 99.9 3E-21 6.5E-26 185.4 43.9 332 16-361 46-382 (656)
14 KOG4626 O-linked N-acetylgluco 99.9 5E-22 1.1E-26 174.4 33.5 400 18-443 88-490 (966)
15 PRK11788 tetratricopeptide rep 99.9 5.3E-22 1.1E-26 182.2 33.4 304 56-367 41-354 (389)
16 PRK15174 Vi polysaccharide exp 99.9 3.7E-20 8E-25 177.9 45.8 384 21-436 14-403 (656)
17 PRK11788 tetratricopeptide rep 99.9 1.8E-21 3.9E-26 178.7 34.9 306 16-332 39-354 (389)
18 PRK10049 pgaA outer membrane p 99.9 1.5E-19 3.3E-24 177.5 47.9 419 49-482 14-467 (765)
19 PRK14574 hmsH outer membrane p 99.9 1.6E-18 3.4E-23 167.1 50.7 447 17-480 39-522 (822)
20 PRK09782 bacteriophage N4 rece 99.9 1.3E-18 2.8E-23 171.2 50.0 181 23-219 55-275 (987)
21 PRK10049 pgaA outer membrane p 99.9 4.6E-19 9.9E-24 174.2 47.1 409 19-452 22-470 (765)
22 KOG2002 TPR-containing nuclear 99.9 5.6E-18 1.2E-22 156.7 39.9 453 10-478 268-752 (1018)
23 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-17 3.2E-22 160.7 44.8 405 52-473 129-573 (615)
24 KOG2002 TPR-containing nuclear 99.9 5.3E-18 1.2E-22 156.9 39.1 442 26-481 250-719 (1018)
25 PRK09782 bacteriophage N4 rece 99.9 3.4E-16 7.3E-21 154.4 47.5 434 18-479 188-714 (987)
26 PRK14574 hmsH outer membrane p 99.8 6.4E-16 1.4E-20 149.3 46.9 413 17-450 73-525 (822)
27 KOG1915 Cell cycle control pro 99.8 9.9E-16 2.2E-20 131.0 40.9 426 23-472 84-537 (677)
28 KOG4422 Uncharacterized conser 99.8 8.1E-16 1.7E-20 129.9 38.6 409 51-474 117-593 (625)
29 KOG2076 RNA polymerase III tra 99.8 3E-14 6.5E-19 131.6 43.9 331 19-358 146-510 (895)
30 KOG4422 Uncharacterized conser 99.8 3.8E-14 8.2E-19 120.0 39.5 430 14-454 118-608 (625)
31 KOG2003 TPR repeat-containing 99.8 7.9E-16 1.7E-20 131.1 29.6 420 17-457 206-709 (840)
32 KOG0547 Translocase of outer m 99.8 5.2E-15 1.1E-19 127.2 33.3 405 17-436 120-566 (606)
33 KOG0495 HAT repeat protein [RN 99.8 2.1E-13 4.5E-18 121.7 43.7 260 20-289 414-679 (913)
34 KOG2076 RNA polymerase III tra 99.8 1.5E-13 3.3E-18 127.1 39.9 371 52-435 141-554 (895)
35 PRK10747 putative protoheme IX 99.7 2.4E-14 5.3E-19 130.1 33.5 283 170-471 98-390 (398)
36 TIGR00540 hemY_coli hemY prote 99.7 2.8E-14 6E-19 130.5 33.2 82 275-357 313-396 (409)
37 KOG0495 HAT repeat protein [RN 99.7 2.5E-12 5.4E-17 114.9 43.7 430 20-472 448-881 (913)
38 TIGR00540 hemY_coli hemY prote 99.7 3.2E-14 7E-19 130.0 33.5 290 170-471 98-399 (409)
39 KOG2003 TPR repeat-containing 99.7 1E-14 2.2E-19 124.4 27.3 384 18-422 243-709 (840)
40 PRK10747 putative protoheme IX 99.7 9.1E-14 2E-18 126.3 35.5 283 63-359 97-389 (398)
41 PF13429 TPR_15: Tetratricopep 99.7 1E-16 2.2E-21 139.3 12.8 258 19-287 15-274 (280)
42 PF13429 TPR_15: Tetratricopep 99.7 1.3E-16 2.8E-21 138.7 11.5 257 57-321 15-273 (280)
43 KOG1915 Cell cycle control pro 99.7 2.7E-11 5.9E-16 104.4 41.7 425 19-470 114-584 (677)
44 KOG1155 Anaphase-promoting com 99.7 5.1E-12 1.1E-16 108.4 36.7 365 44-434 158-534 (559)
45 KOG1126 DNA-binding cell divis 99.7 5.8E-14 1.3E-18 125.7 23.8 283 27-325 334-620 (638)
46 COG3071 HemY Uncharacterized e 99.7 5E-12 1.1E-16 106.7 32.9 294 62-366 96-396 (400)
47 KOG0547 Translocase of outer m 99.6 1.6E-11 3.5E-16 106.2 36.1 397 53-471 118-566 (606)
48 COG2956 Predicted N-acetylgluc 99.6 3.8E-12 8.1E-17 104.2 30.6 289 61-360 46-347 (389)
49 COG2956 Predicted N-acetylgluc 99.6 2.6E-12 5.6E-17 105.1 28.5 289 133-436 48-347 (389)
50 COG3071 HemY Uncharacterized e 99.6 5.5E-12 1.2E-16 106.4 31.4 286 170-471 98-390 (400)
51 KOG1155 Anaphase-promoting com 99.6 2.1E-11 4.6E-16 104.7 34.9 362 84-471 163-536 (559)
52 KOG1126 DNA-binding cell divis 99.6 2.5E-13 5.4E-18 121.7 23.8 288 64-363 333-623 (638)
53 KOG1173 Anaphase-promoting com 99.6 9.8E-11 2.1E-15 103.3 37.6 435 17-475 21-522 (611)
54 KOG3785 Uncharacterized conser 99.6 3.3E-11 7.2E-16 100.0 32.2 418 19-474 29-493 (557)
55 PF12569 NARP1: NMDA receptor- 99.6 3E-10 6.5E-15 104.4 40.0 433 18-467 10-516 (517)
56 KOG3785 Uncharacterized conser 99.6 1.9E-10 4.1E-15 95.7 32.8 385 57-468 29-454 (557)
57 KOG1174 Anaphase-promoting com 99.6 2.1E-09 4.5E-14 91.4 39.0 291 170-475 210-504 (564)
58 KOG1156 N-terminal acetyltrans 99.6 8.4E-10 1.8E-14 99.1 38.5 432 19-473 14-470 (700)
59 PRK12370 invasion protein regu 99.5 7E-12 1.5E-16 119.2 26.7 268 47-326 253-536 (553)
60 PRK12370 invasion protein regu 99.5 3.7E-11 8E-16 114.3 30.3 265 84-360 255-535 (553)
61 KOG1173 Anaphase-promoting com 99.5 3.1E-10 6.7E-15 100.3 32.7 291 152-454 241-534 (611)
62 KOG2376 Signal recognition par 99.5 2.5E-09 5.4E-14 95.1 36.8 420 18-468 18-517 (652)
63 KOG2047 mRNA splicing factor [ 99.5 6.7E-09 1.5E-13 93.4 39.3 427 19-471 109-615 (835)
64 PF12569 NARP1: NMDA receptor- 99.5 2.3E-10 5E-15 105.2 30.9 299 52-360 6-334 (517)
65 KOG1156 N-terminal acetyltrans 99.5 8E-09 1.7E-13 93.0 39.0 425 21-469 50-509 (700)
66 TIGR02521 type_IV_pilW type IV 99.5 4.8E-11 1E-15 101.4 24.8 199 50-253 31-230 (234)
67 TIGR02521 type_IV_pilW type IV 99.5 6.3E-11 1.4E-15 100.7 24.2 199 14-220 33-232 (234)
68 KOG4162 Predicted calmodulin-b 99.5 3.3E-09 7.1E-14 97.4 35.5 414 45-477 318-789 (799)
69 KOG4318 Bicoid mRNA stability 99.4 2.7E-10 5.8E-15 105.8 28.1 239 10-273 23-283 (1088)
70 KOG1129 TPR repeat-containing 99.4 8.9E-12 1.9E-16 102.2 16.7 230 54-290 227-458 (478)
71 KOG4340 Uncharacterized conser 99.4 6.9E-10 1.5E-14 90.2 26.9 194 264-473 244-445 (459)
72 KOG1129 TPR repeat-containing 99.4 1.8E-11 3.9E-16 100.4 17.4 230 124-360 227-458 (478)
73 KOG2047 mRNA splicing factor [ 99.4 2.5E-08 5.4E-13 89.8 38.2 411 50-473 102-581 (835)
74 KOG1174 Anaphase-promoting com 99.4 1.1E-09 2.4E-14 93.1 27.0 271 45-325 227-500 (564)
75 KOG4318 Bicoid mRNA stability 99.4 9.4E-10 2E-14 102.3 26.1 266 43-345 18-285 (1088)
76 PRK11189 lipoprotein NlpI; Pro 99.4 6.7E-10 1.5E-14 96.8 24.1 225 22-256 36-266 (296)
77 KOG1840 Kinesin light chain [C 99.3 6E-10 1.3E-14 101.2 23.7 96 228-323 369-477 (508)
78 COG3063 PilF Tfp pilus assembl 99.3 1.8E-09 3.8E-14 84.7 22.5 197 53-254 38-235 (250)
79 KOG0548 Molecular co-chaperone 99.3 1.1E-08 2.5E-13 90.2 30.0 415 19-474 9-458 (539)
80 KOG4162 Predicted calmodulin-b 99.3 9.1E-08 2E-12 88.2 35.6 404 15-436 326-783 (799)
81 KOG1840 Kinesin light chain [C 99.3 2.1E-09 4.5E-14 97.8 25.0 246 190-469 198-477 (508)
82 COG3063 PilF Tfp pilus assembl 99.3 4.1E-09 9E-14 82.7 22.9 200 86-290 36-236 (250)
83 PRK11189 lipoprotein NlpI; Pro 99.3 2.2E-09 4.8E-14 93.6 23.2 194 15-221 67-266 (296)
84 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3.1E-16 74.8 6.1 50 405-454 1-50 (50)
85 cd05804 StaR_like StaR_like; a 99.3 1.2E-07 2.5E-12 86.2 33.9 306 49-360 5-336 (355)
86 KOG0624 dsRNA-activated protei 99.3 3E-07 6.5E-12 76.7 32.1 299 16-326 42-371 (504)
87 PF13041 PPR_2: PPR repeat fam 99.2 3E-11 6.5E-16 73.4 6.4 47 225-271 2-48 (50)
88 KOG1914 mRNA cleavage and poly 99.2 7.8E-07 1.7E-11 78.9 35.5 416 44-471 14-501 (656)
89 KOG4340 Uncharacterized conser 99.2 3.4E-08 7.3E-13 80.6 25.2 390 15-436 13-443 (459)
90 cd05804 StaR_like StaR_like; a 99.2 1.4E-07 3E-12 85.7 32.2 309 11-325 5-336 (355)
91 KOG2376 Signal recognition par 99.2 1.5E-06 3.2E-11 78.1 35.8 392 55-475 17-491 (652)
92 KOG0624 dsRNA-activated protei 99.1 2.2E-06 4.8E-11 71.7 33.1 359 47-442 35-426 (504)
93 KOG3617 WD40 and TPR repeat-co 99.1 4.4E-07 9.6E-12 84.4 29.3 229 22-288 738-994 (1416)
94 PRK04841 transcriptional regul 99.1 1.6E-06 3.5E-11 89.2 36.9 339 129-472 383-761 (903)
95 PF04733 Coatomer_E: Coatomer 99.1 8.7E-09 1.9E-13 88.4 16.9 249 20-288 9-263 (290)
96 PF04733 Coatomer_E: Coatomer 99.1 6.5E-09 1.4E-13 89.1 15.2 230 229-476 38-270 (290)
97 PRK04841 transcriptional regul 99.0 2.6E-06 5.5E-11 87.8 35.9 337 95-436 384-760 (903)
98 KOG1125 TPR repeat-containing 99.0 6.1E-08 1.3E-12 86.4 20.1 97 189-288 428-525 (579)
99 KOG1127 TPR repeat-containing 99.0 3.9E-06 8.6E-11 80.0 31.8 421 14-467 494-948 (1238)
100 KOG1125 TPR repeat-containing 99.0 1.4E-07 2.9E-12 84.3 20.4 143 210-354 413-565 (579)
101 KOG0985 Vesicle coat protein c 98.9 3.8E-05 8.2E-10 73.7 35.4 322 48-434 982-1306(1666)
102 PLN02789 farnesyltranstransfer 98.9 1.7E-06 3.7E-11 75.4 24.6 209 20-237 45-266 (320)
103 KOG3616 Selective LIM binding 98.9 1.9E-05 4.2E-10 73.1 31.4 102 170-284 746-847 (1636)
104 PLN02789 farnesyltranstransfer 98.9 4.8E-06 1.1E-10 72.6 26.6 214 53-273 40-267 (320)
105 KOG3616 Selective LIM binding 98.9 7.7E-06 1.7E-10 75.6 28.3 108 234-354 740-847 (1636)
106 KOG3617 WD40 and TPR repeat-co 98.9 1.2E-05 2.6E-10 75.3 28.9 357 49-467 725-1105(1416)
107 KOG0548 Molecular co-chaperone 98.8 1.4E-05 3.1E-10 71.2 27.5 387 7-436 31-455 (539)
108 KOG1128 Uncharacterized conser 98.8 5.8E-07 1.3E-11 82.6 18.9 212 195-435 402-615 (777)
109 TIGR03302 OM_YfiO outer membra 98.8 1.2E-06 2.5E-11 74.3 19.3 188 47-255 30-232 (235)
110 KOG1070 rRNA processing protei 98.8 7.8E-06 1.7E-10 80.8 26.5 248 103-357 1443-1697(1710)
111 PRK15359 type III secretion sy 98.8 4.5E-07 9.7E-12 69.5 14.9 116 33-159 14-129 (144)
112 PRK10370 formate-dependent nit 98.8 4.4E-07 9.6E-12 73.6 15.6 119 63-186 52-174 (198)
113 KOG1070 rRNA processing protei 98.8 7.5E-06 1.6E-10 80.9 26.1 247 70-322 1444-1697(1710)
114 KOG1914 mRNA cleavage and poly 98.8 0.0001 2.3E-09 66.0 35.8 428 10-457 18-525 (656)
115 TIGR03302 OM_YfiO outer membra 98.8 7.6E-07 1.6E-11 75.5 17.7 186 11-220 32-232 (235)
116 COG5010 TadD Flp pilus assembl 98.8 3E-06 6.4E-11 68.5 19.3 166 47-218 64-229 (257)
117 KOG3081 Vesicle coat complex C 98.7 3.9E-05 8.4E-10 62.3 24.5 49 241-290 188-236 (299)
118 KOG3081 Vesicle coat complex C 98.7 1.6E-05 3.5E-10 64.4 22.4 251 19-290 15-271 (299)
119 KOG1128 Uncharacterized conser 98.7 2.1E-06 4.5E-11 79.1 19.1 222 47-290 395-616 (777)
120 KOG2053 Mitochondrial inherita 98.7 0.00028 6.1E-09 67.2 42.1 434 22-479 19-510 (932)
121 COG5010 TadD Flp pilus assembl 98.7 2E-06 4.3E-11 69.5 16.6 160 17-184 71-230 (257)
122 KOG1127 TPR repeat-containing 98.7 4.4E-05 9.5E-10 73.2 27.8 182 66-254 474-658 (1238)
123 KOG0985 Vesicle coat protein c 98.7 0.0001 2.3E-09 70.9 29.9 294 13-352 1049-1375(1666)
124 PRK14720 transcript cleavage f 98.7 1.3E-05 2.8E-10 78.2 24.0 131 11-149 30-178 (906)
125 PRK14720 transcript cleavage f 98.7 2.5E-05 5.4E-10 76.4 25.8 171 47-255 28-198 (906)
126 PRK15179 Vi polysaccharide bio 98.6 6.6E-06 1.4E-10 79.3 21.2 138 44-185 80-217 (694)
127 PRK15359 type III secretion sy 98.6 1.2E-06 2.7E-11 67.1 13.0 108 15-128 27-134 (144)
128 PF12854 PPR_1: PPR repeat 98.6 4.8E-08 1E-12 53.0 3.7 32 402-433 2-33 (34)
129 PRK10370 formate-dependent nit 98.6 1.4E-05 2.9E-10 64.9 19.6 120 239-361 52-174 (198)
130 TIGR02552 LcrH_SycD type III s 98.6 1.9E-06 4.1E-11 65.8 14.0 110 47-160 14-123 (135)
131 PRK15179 Vi polysaccharide bio 98.6 3.9E-05 8.4E-10 74.2 24.4 133 84-220 85-217 (694)
132 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.5E-12 50.9 4.1 31 187-217 3-33 (34)
133 KOG3060 Uncharacterized conser 98.5 0.00021 4.5E-09 57.8 21.8 166 86-256 53-221 (289)
134 COG4783 Putative Zn-dependent 98.5 1.5E-05 3.3E-10 70.4 16.7 114 24-143 318-431 (484)
135 TIGR02552 LcrH_SycD type III s 98.4 2.1E-05 4.6E-10 59.9 14.4 110 72-185 5-114 (135)
136 KOG2053 Mitochondrial inherita 98.4 0.0025 5.4E-08 61.1 43.2 425 21-469 52-534 (932)
137 COG4783 Putative Zn-dependent 98.4 0.00062 1.3E-08 60.6 24.2 111 97-212 318-429 (484)
138 KOG3060 Uncharacterized conser 98.4 0.00017 3.6E-09 58.3 18.7 193 23-220 23-220 (289)
139 PF09976 TPR_21: Tetratricopep 98.3 2.1E-05 4.7E-10 60.5 13.3 116 24-145 23-143 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.6E-05 3.6E-10 70.8 14.1 125 52-184 171-296 (395)
141 TIGR00756 PPR pentatricopeptid 98.2 2.9E-06 6.2E-11 46.9 4.4 33 409-441 2-34 (35)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.5E-05 1.8E-09 66.4 15.4 124 229-358 172-295 (395)
143 PF09976 TPR_21: Tetratricopep 98.2 0.00014 3E-09 56.0 14.8 125 229-357 15-144 (145)
144 TIGR02795 tol_pal_ybgF tol-pal 98.2 6.4E-05 1.4E-09 55.8 12.4 97 17-114 7-105 (119)
145 PF13812 PPR_3: Pentatricopept 98.2 4.7E-06 1E-10 45.6 4.3 33 408-440 2-34 (34)
146 KOG0553 TPR repeat-containing 98.1 3.4E-05 7.5E-10 63.9 10.8 101 60-164 91-191 (304)
147 PLN03088 SGT1, suppressor of 98.1 5E-05 1.1E-09 68.1 12.7 92 19-115 9-100 (356)
148 PRK15363 pathogenicity island 98.1 5E-05 1.1E-09 57.3 9.9 99 49-149 34-132 (157)
149 PLN03088 SGT1, suppressor of 98.1 0.00011 2.3E-09 66.0 13.9 107 55-165 7-113 (356)
150 PRK15363 pathogenicity island 98.1 8.8E-05 1.9E-09 56.0 10.8 98 85-185 35-132 (157)
151 cd00189 TPR Tetratricopeptide 98.1 7.5E-05 1.6E-09 52.8 10.5 88 19-111 7-94 (100)
152 KOG0550 Molecular chaperone (D 98.1 0.0024 5.2E-08 55.7 20.5 84 272-359 260-349 (486)
153 cd00189 TPR Tetratricopeptide 98.0 5.5E-05 1.2E-09 53.5 9.5 97 52-150 2-98 (100)
154 PF10037 MRP-S27: Mitochondria 98.0 0.00025 5.5E-09 63.7 14.5 124 115-239 61-186 (429)
155 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.8E-10 44.2 4.3 33 193-225 2-34 (35)
156 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00025 5.5E-09 52.5 12.7 100 51-150 3-106 (119)
157 PRK10866 outer membrane biogen 98.0 0.0021 4.6E-08 54.1 19.1 61 53-114 35-98 (243)
158 PF12895 Apc3: Anaphase-promot 98.0 8.3E-06 1.8E-10 56.0 3.9 81 25-110 2-83 (84)
159 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.011 2.5E-07 52.3 32.6 130 333-471 399-531 (660)
160 PRK10866 outer membrane biogen 98.0 0.0082 1.8E-07 50.6 22.7 59 412-470 180-240 (243)
161 PF13812 PPR_3: Pentatricopept 98.0 2E-05 4.3E-10 43.1 4.4 32 193-224 3-34 (34)
162 PF12895 Apc3: Anaphase-promot 97.9 1.9E-05 4E-10 54.2 4.7 81 63-145 2-83 (84)
163 PF14938 SNAP: Soluble NSF att 97.9 0.0026 5.6E-08 55.3 19.0 86 170-255 129-225 (282)
164 PF10037 MRP-S27: Mitochondria 97.9 0.00025 5.4E-09 63.7 12.8 120 189-308 64-185 (429)
165 PF13432 TPR_16: Tetratricopep 97.9 5.6E-05 1.2E-09 48.9 6.4 60 18-81 3-62 (65)
166 PF13414 TPR_11: TPR repeat; P 97.9 8.8E-05 1.9E-09 48.6 7.1 66 406-472 2-68 (69)
167 KOG0553 TPR repeat-containing 97.9 0.00036 7.7E-09 58.1 11.8 99 94-198 90-189 (304)
168 PF01535 PPR: PPR repeat; Int 97.9 2.5E-05 5.4E-10 41.6 3.5 29 409-437 2-30 (31)
169 PF05843 Suf: Suppressor of fo 97.8 0.0003 6.6E-09 60.8 11.9 132 333-472 3-137 (280)
170 PF13432 TPR_16: Tetratricopep 97.8 9.6E-05 2.1E-09 47.7 6.8 62 413-475 3-64 (65)
171 PRK02603 photosystem I assembl 97.8 0.0015 3.2E-08 52.1 14.7 91 49-140 34-126 (172)
172 PF08579 RPM2: Mitochondrial r 97.8 0.00057 1.2E-08 47.8 10.3 76 126-201 31-114 (120)
173 PRK02603 photosystem I assembl 97.8 0.00077 1.7E-08 53.7 12.9 92 14-109 37-130 (172)
174 COG4235 Cytochrome c biogenesi 97.8 0.0019 4.2E-08 54.2 15.1 101 47-149 153-256 (287)
175 PF12688 TPR_5: Tetratrico pep 97.8 0.0017 3.6E-08 47.4 13.1 94 17-113 6-103 (120)
176 PF14938 SNAP: Soluble NSF att 97.8 0.0016 3.5E-08 56.6 15.4 119 241-360 89-225 (282)
177 CHL00033 ycf3 photosystem I as 97.8 0.00072 1.6E-08 53.7 12.2 115 27-144 14-137 (168)
178 COG4700 Uncharacterized protei 97.8 0.0026 5.7E-08 49.0 14.1 159 15-181 59-218 (251)
179 PF14559 TPR_19: Tetratricopep 97.8 5E-05 1.1E-09 49.6 4.5 53 24-80 3-55 (68)
180 PF12688 TPR_5: Tetratrico pep 97.8 0.0021 4.6E-08 46.8 13.2 106 54-165 5-116 (120)
181 CHL00033 ycf3 photosystem I as 97.8 0.00058 1.3E-08 54.2 11.4 92 15-110 38-138 (168)
182 PF07079 DUF1347: Protein of u 97.7 0.029 6.2E-07 49.9 37.4 434 21-470 15-523 (549)
183 PF14559 TPR_19: Tetratricopep 97.7 0.00012 2.5E-09 47.9 5.9 53 61-114 2-54 (68)
184 PF08579 RPM2: Mitochondrial r 97.7 0.00088 1.9E-08 46.9 10.2 76 92-167 32-116 (120)
185 PF05843 Suf: Suppressor of fo 97.7 0.0012 2.7E-08 57.0 13.8 129 228-359 3-135 (280)
186 KOG1258 mRNA processing protei 97.7 0.04 8.7E-07 51.0 31.8 381 23-421 56-489 (577)
187 PRK10153 DNA-binding transcrip 97.7 0.0031 6.6E-08 59.4 16.8 70 406-477 419-488 (517)
188 KOG1130 Predicted G-alpha GTPa 97.7 0.00037 8E-09 60.4 9.6 265 19-289 24-343 (639)
189 COG3898 Uncharacterized membra 97.7 0.031 6.8E-07 48.7 27.4 285 23-325 95-392 (531)
190 PF13371 TPR_9: Tetratricopept 97.7 0.00018 3.9E-09 47.8 6.2 66 415-481 3-68 (73)
191 COG4700 Uncharacterized protei 97.6 0.019 4.1E-07 44.5 17.4 154 57-217 63-219 (251)
192 PF01535 PPR: PPR repeat; Int 97.6 0.00012 2.6E-09 38.9 3.7 25 194-218 3-27 (31)
193 KOG2796 Uncharacterized conser 97.6 0.029 6.2E-07 46.1 18.4 144 298-446 179-323 (366)
194 PF13414 TPR_11: TPR repeat; P 97.6 0.00026 5.6E-09 46.4 5.9 63 50-113 3-66 (69)
195 KOG0550 Molecular chaperone (D 97.6 0.0097 2.1E-07 52.1 16.5 164 304-474 177-353 (486)
196 PF13525 YfiO: Outer membrane 97.6 0.0073 1.6E-07 49.5 15.5 61 20-81 13-73 (203)
197 COG4235 Cytochrome c biogenesi 97.6 0.0047 1E-07 51.9 14.2 125 314-450 140-268 (287)
198 PRK10153 DNA-binding transcrip 97.5 0.0073 1.6E-07 56.9 16.8 48 170-219 434-481 (517)
199 PF13525 YfiO: Outer membrane 97.5 0.013 2.7E-07 48.2 16.4 49 412-462 146-198 (203)
200 PF04840 Vps16_C: Vps16, C-ter 97.5 0.06 1.3E-06 47.3 28.3 283 13-357 1-288 (319)
201 KOG2041 WD40 repeat protein [G 97.5 0.083 1.8E-06 49.8 21.8 205 82-322 689-904 (1189)
202 KOG2796 Uncharacterized conser 97.4 0.025 5.4E-07 46.4 16.1 132 193-325 179-315 (366)
203 PRK10803 tol-pal system protei 97.4 0.0078 1.7E-07 51.2 13.7 98 53-150 146-247 (263)
204 KOG1130 Predicted G-alpha GTPa 97.4 0.0019 4.1E-08 56.2 9.7 132 228-359 197-343 (639)
205 PF06239 ECSIT: Evolutionarily 97.3 0.0057 1.2E-07 48.8 11.2 103 47-168 44-151 (228)
206 KOG0543 FKBP-type peptidyl-pro 97.3 0.0083 1.8E-07 52.6 13.0 93 20-113 216-319 (397)
207 KOG2114 Vacuolar assembly/sort 97.3 0.16 3.4E-06 49.1 22.0 123 12-147 334-458 (933)
208 PF06239 ECSIT: Evolutionarily 97.3 0.0076 1.7E-07 48.1 11.6 104 83-206 45-153 (228)
209 PF13424 TPR_12: Tetratricopep 97.3 0.00087 1.9E-08 45.1 5.7 64 407-470 5-74 (78)
210 PF03704 BTAD: Bacterial trans 97.3 0.018 4E-07 44.3 13.8 72 86-158 63-139 (146)
211 PF13371 TPR_9: Tetratricopept 97.2 0.0028 6E-08 42.0 7.7 55 59-114 4-58 (73)
212 PRK10803 tol-pal system protei 97.2 0.0087 1.9E-07 50.9 12.2 97 378-476 148-251 (263)
213 PF13281 DUF4071: Domain of un 97.2 0.14 3.1E-06 45.5 19.4 31 225-255 304-334 (374)
214 PRK15331 chaperone protein Sic 97.2 0.0091 2E-07 45.6 10.5 96 52-149 39-134 (165)
215 KOG2041 WD40 repeat protein [G 97.1 0.26 5.6E-06 46.7 26.8 202 47-287 689-904 (1189)
216 KOG4555 TPR repeat-containing 97.1 0.014 3E-07 42.1 10.3 54 59-113 52-105 (175)
217 PF03704 BTAD: Bacterial trans 97.1 0.0055 1.2E-07 47.3 9.2 104 20-124 14-140 (146)
218 PRK15331 chaperone protein Sic 97.1 0.013 2.8E-07 44.8 10.5 96 374-471 39-134 (165)
219 PF13281 DUF4071: Domain of un 97.0 0.18 4E-06 44.8 18.8 80 263-342 143-228 (374)
220 KOG2280 Vacuolar assembly/sort 97.0 0.38 8.1E-06 46.1 24.4 318 11-356 436-795 (829)
221 PF12921 ATP13: Mitochondrial 96.8 0.048 1E-06 40.3 11.7 100 330-455 1-101 (126)
222 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.018 3.8E-07 51.8 10.8 67 47-114 72-141 (453)
223 COG4105 ComL DNA uptake lipopr 96.8 0.24 5.2E-06 41.1 18.9 179 56-255 40-233 (254)
224 PF13424 TPR_12: Tetratricopep 96.8 0.0033 7.2E-08 42.3 4.9 63 15-78 8-74 (78)
225 KOG1538 Uncharacterized conser 96.7 0.35 7.6E-06 45.5 18.2 52 298-358 749-800 (1081)
226 COG3898 Uncharacterized membra 96.7 0.4 8.8E-06 42.2 30.3 64 406-471 328-392 (531)
227 COG1729 Uncharacterized protei 96.7 0.072 1.6E-06 44.4 12.7 90 21-114 150-244 (262)
228 PF07079 DUF1347: Protein of u 96.6 0.52 1.1E-05 42.4 30.9 86 12-97 79-179 (549)
229 PF12921 ATP13: Mitochondrial 96.6 0.043 9.4E-07 40.5 9.8 79 191-269 2-96 (126)
230 PF13428 TPR_14: Tetratricopep 96.5 0.0074 1.6E-07 35.0 4.6 39 52-91 3-41 (44)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.017 3.6E-07 52.0 8.6 64 406-471 74-141 (453)
232 KOG4555 TPR repeat-containing 96.4 0.2 4.3E-06 36.5 11.9 91 21-115 52-145 (175)
233 KOG1258 mRNA processing protei 96.4 0.81 1.8E-05 42.8 34.4 410 49-477 44-513 (577)
234 KOG0543 FKBP-type peptidyl-pro 96.4 0.048 1E-06 48.0 10.6 125 57-184 215-354 (397)
235 PF13512 TPR_18: Tetratricopep 96.4 0.058 1.3E-06 40.3 9.5 75 19-94 17-91 (142)
236 KOG1538 Uncharacterized conser 96.4 0.77 1.7E-05 43.3 18.3 87 331-435 747-845 (1081)
237 PF10300 DUF3808: Protein of u 96.4 0.33 7.1E-06 45.6 16.7 179 105-290 177-376 (468)
238 KOG1941 Acetylcholine receptor 96.4 0.16 3.5E-06 44.0 13.1 131 337-469 128-273 (518)
239 PRK11906 transcriptional regul 96.3 0.38 8.2E-06 43.8 16.0 149 27-183 273-434 (458)
240 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.78 1.7E-05 41.3 32.7 421 9-452 39-545 (660)
241 COG3118 Thioredoxin domain-con 96.3 0.57 1.2E-05 39.7 17.2 143 57-205 141-286 (304)
242 COG3118 Thioredoxin domain-con 96.2 0.64 1.4E-05 39.5 16.3 138 170-310 148-286 (304)
243 KOG2396 HAT (Half-A-TPR) repea 96.2 0.98 2.1E-05 41.3 35.3 417 28-471 87-559 (568)
244 COG1729 Uncharacterized protei 96.2 0.17 3.8E-06 42.3 12.2 100 375-474 144-247 (262)
245 KOG1585 Protein required for f 96.1 0.6 1.3E-05 38.3 16.2 55 194-249 193-250 (308)
246 PF13512 TPR_18: Tetratricopep 96.1 0.28 6E-06 36.8 11.8 85 50-134 10-96 (142)
247 PF10300 DUF3808: Protein of u 96.0 0.52 1.1E-05 44.3 16.3 178 31-219 176-375 (468)
248 PF08631 SPO22: Meiosis protei 96.0 0.91 2E-05 39.5 24.6 165 297-470 85-274 (278)
249 PF09205 DUF1955: Domain of un 96.0 0.42 9E-06 35.0 13.4 65 297-362 87-151 (161)
250 KOG1585 Protein required for f 95.9 0.77 1.7E-05 37.7 15.6 207 121-355 32-251 (308)
251 PF04053 Coatomer_WDAD: Coatom 95.9 0.49 1.1E-05 43.9 15.1 155 95-286 271-427 (443)
252 PRK11906 transcriptional regul 95.9 0.32 7E-06 44.2 13.3 85 387-474 319-404 (458)
253 PF04053 Coatomer_WDAD: Coatom 95.9 0.27 5.9E-06 45.5 13.4 159 19-217 268-428 (443)
254 smart00299 CLH Clathrin heavy 95.9 0.56 1.2E-05 35.7 14.3 126 54-202 11-136 (140)
255 KOG2610 Uncharacterized conser 95.8 0.43 9.4E-06 41.0 13.0 156 59-217 112-273 (491)
256 COG4105 ComL DNA uptake lipopr 95.8 0.92 2E-05 37.8 22.9 58 412-470 172-232 (254)
257 PF07035 Mic1: Colon cancer-as 95.7 0.74 1.6E-05 35.8 14.5 134 106-254 15-148 (167)
258 COG4785 NlpI Lipoprotein NlpI, 95.7 0.89 1.9E-05 36.6 15.5 84 63-148 78-161 (297)
259 PF04840 Vps16_C: Vps16, C-ter 95.6 1.5 3.3E-05 38.8 30.0 109 298-433 179-288 (319)
260 PF13170 DUF4003: Protein of u 95.6 0.49 1.1E-05 41.2 13.0 133 101-236 78-227 (297)
261 PF13428 TPR_14: Tetratricopep 95.5 0.029 6.3E-07 32.5 3.9 28 409-436 3-30 (44)
262 KOG1464 COP9 signalosome, subu 95.5 1.3 2.8E-05 37.0 19.9 24 460-483 380-403 (440)
263 KOG2280 Vacuolar assembly/sort 95.4 2.7 5.9E-05 40.6 26.3 107 298-430 686-793 (829)
264 PF08631 SPO22: Meiosis protei 95.3 1.7 3.8E-05 37.7 24.5 125 23-149 4-150 (278)
265 KOG2610 Uncharacterized conser 95.2 0.9 1.9E-05 39.2 12.8 157 94-253 112-274 (491)
266 PF04184 ST7: ST7 protein; In 95.2 2.6 5.7E-05 38.8 16.9 61 265-325 263-324 (539)
267 COG2909 MalT ATP-dependent tra 95.1 3.9 8.4E-05 40.6 27.8 231 236-467 425-684 (894)
268 PF09205 DUF1955: Domain of un 95.1 0.9 2E-05 33.3 14.9 141 307-475 13-153 (161)
269 PF04184 ST7: ST7 protein; In 95.1 2.7 5.9E-05 38.7 19.4 149 125-288 173-322 (539)
270 COG3629 DnrI DNA-binding trans 94.9 0.29 6.3E-06 41.6 9.5 81 85-166 153-238 (280)
271 PF13176 TPR_7: Tetratricopept 94.9 0.07 1.5E-06 29.2 4.0 27 444-470 1-27 (36)
272 KOG3941 Intermediate in Toll s 94.8 0.58 1.2E-05 39.3 10.5 103 47-168 64-171 (406)
273 PF09613 HrpB1_HrpK: Bacterial 94.8 1 2.3E-05 34.6 11.1 89 387-478 25-113 (160)
274 PF13431 TPR_17: Tetratricopep 94.8 0.044 9.5E-07 29.5 2.9 32 395-427 2-33 (34)
275 KOG1941 Acetylcholine receptor 94.8 0.8 1.7E-05 40.0 11.6 231 20-253 14-273 (518)
276 KOG4234 TPR repeat-containing 94.8 0.46 9.9E-06 37.7 9.3 90 20-114 103-197 (271)
277 PF09613 HrpB1_HrpK: Bacterial 94.4 1.8 3.8E-05 33.4 12.9 71 60-133 20-90 (160)
278 PF13431 TPR_17: Tetratricopep 94.3 0.053 1.1E-06 29.2 2.4 22 48-69 11-32 (34)
279 COG4785 NlpI Lipoprotein NlpI, 94.2 2.4 5.3E-05 34.3 14.8 182 240-436 79-266 (297)
280 PF10345 Cohesin_load: Cohesin 94.1 6.5 0.00014 38.8 37.9 186 29-217 38-251 (608)
281 PF13176 TPR_7: Tetratricopept 94.1 0.14 3E-06 28.0 4.0 26 409-434 1-26 (36)
282 KOG1920 IkappaB kinase complex 94.1 8.4 0.00018 39.8 22.5 26 228-253 792-819 (1265)
283 COG3629 DnrI DNA-binding trans 94.0 0.85 1.8E-05 38.9 10.3 96 101-201 137-237 (280)
284 COG4649 Uncharacterized protei 94.0 2.3 5E-05 33.0 13.7 23 195-217 171-193 (221)
285 smart00299 CLH Clathrin heavy 93.8 2.2 4.9E-05 32.4 15.5 14 134-147 21-34 (140)
286 KOG3941 Intermediate in Toll s 93.7 0.79 1.7E-05 38.5 9.2 103 190-311 66-173 (406)
287 TIGR02561 HrpB1_HrpK type III 93.6 1.9 4.1E-05 32.6 10.2 50 387-437 25-74 (153)
288 TIGR02561 HrpB1_HrpK type III 93.5 2.5 5.4E-05 32.0 11.6 53 61-114 21-73 (153)
289 COG2976 Uncharacterized protei 93.5 3.1 6.8E-05 33.1 12.2 64 413-478 132-195 (207)
290 PF07719 TPR_2: Tetratricopept 93.5 0.25 5.4E-06 26.3 4.4 29 444-472 3-31 (34)
291 COG2909 MalT ATP-dependent tra 93.4 9.1 0.0002 38.2 27.5 227 130-356 425-684 (894)
292 KOG1550 Extracellular protein 93.4 8.2 0.00018 37.5 23.9 274 172-472 228-539 (552)
293 PF00515 TPR_1: Tetratricopept 93.4 0.26 5.6E-06 26.3 4.3 29 444-472 3-31 (34)
294 COG4649 Uncharacterized protei 93.3 3.1 6.7E-05 32.4 14.1 139 119-259 58-200 (221)
295 PF10602 RPN7: 26S proteasome 93.2 2.5 5.4E-05 33.7 11.2 63 86-148 37-101 (177)
296 PF10602 RPN7: 26S proteasome 93.1 1.2 2.6E-05 35.5 9.3 64 192-255 37-102 (177)
297 KOG2114 Vacuolar assembly/sort 93.1 10 0.00022 37.6 27.2 148 53-216 337-488 (933)
298 PF00515 TPR_1: Tetratricopept 92.8 0.25 5.5E-06 26.4 3.7 28 52-79 3-30 (34)
299 COG0457 NrfG FOG: TPR repeat [ 92.7 5.2 0.00011 33.4 27.6 189 64-254 37-230 (291)
300 PF02259 FAT: FAT domain; Int 92.4 8.2 0.00018 35.0 16.7 66 406-471 145-213 (352)
301 KOG4648 Uncharacterized conser 92.4 0.8 1.7E-05 39.6 7.7 90 57-148 104-193 (536)
302 KOG4570 Uncharacterized conser 92.2 2.7 5.8E-05 36.1 10.3 101 328-436 61-164 (418)
303 PF06552 TOM20_plant: Plant sp 92.0 1.8 4E-05 33.9 8.5 66 28-98 7-82 (186)
304 PF07035 Mic1: Colon cancer-as 91.9 5 0.00011 31.4 15.3 23 184-206 22-44 (167)
305 PF10345 Cohesin_load: Cohesin 91.8 14 0.00031 36.4 29.7 50 417-466 371-428 (608)
306 PF07719 TPR_2: Tetratricopept 91.8 0.4 8.6E-06 25.5 3.7 27 53-79 4-30 (34)
307 COG0457 NrfG FOG: TPR repeat [ 91.7 6.9 0.00015 32.6 29.0 198 158-359 62-264 (291)
308 KOG1550 Extracellular protein 91.7 14 0.0003 36.0 23.0 245 66-326 228-505 (552)
309 KOG4648 Uncharacterized conser 91.2 1.2 2.7E-05 38.5 7.6 92 91-185 103-194 (536)
310 PF13374 TPR_10: Tetratricopep 91.2 0.57 1.2E-05 26.3 4.2 29 443-471 3-31 (42)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 90.6 2.4 5.1E-05 29.2 6.9 60 390-450 25-84 (103)
312 KOG4234 TPR repeat-containing 90.6 3.6 7.8E-05 32.9 8.9 99 339-443 103-202 (271)
313 PRK15180 Vi polysaccharide bio 90.5 14 0.00031 34.0 26.0 128 17-150 294-421 (831)
314 PF13929 mRNA_stabil: mRNA sta 90.5 11 0.00023 32.5 13.2 85 257-341 198-288 (292)
315 COG2976 Uncharacterized protei 90.4 4.8 0.0001 32.1 9.5 126 14-150 56-189 (207)
316 PF13181 TPR_8: Tetratricopept 90.3 0.86 1.9E-05 24.2 4.1 29 444-472 3-31 (34)
317 PRK15180 Vi polysaccharide bio 89.8 3.9 8.4E-05 37.4 9.7 117 170-290 303-420 (831)
318 KOG0890 Protein kinase of the 89.7 41 0.00089 38.1 26.1 318 17-361 1388-1732(2382)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 89.6 1.9 4.1E-05 29.7 5.9 51 422-472 22-72 (103)
320 KOG4570 Uncharacterized conser 89.5 7 0.00015 33.8 10.4 128 197-326 25-165 (418)
321 KOG2066 Vacuolar assembly/sort 89.5 23 0.0005 34.9 26.1 102 19-132 363-467 (846)
322 KOG0276 Vesicle coat complex C 89.3 15 0.00031 35.1 13.0 71 170-255 651-721 (794)
323 PF13374 TPR_10: Tetratricopep 89.3 1 2.2E-05 25.3 4.2 28 408-435 3-30 (42)
324 KOG1920 IkappaB kinase complex 89.3 30 0.00066 36.0 30.1 77 270-358 948-1026(1265)
325 PF13174 TPR_6: Tetratricopept 89.1 1 2.3E-05 23.5 3.9 24 448-471 6-29 (33)
326 TIGR03504 FimV_Cterm FimV C-te 89.0 0.7 1.5E-05 26.6 3.1 26 447-472 4-29 (44)
327 PF07163 Pex26: Pex26 protein; 88.9 14 0.0003 31.5 11.9 125 19-143 42-181 (309)
328 PF02284 COX5A: Cytochrome c o 88.8 6.4 0.00014 27.5 8.4 39 249-287 33-71 (108)
329 PF02284 COX5A: Cytochrome c o 88.2 7 0.00015 27.3 9.0 63 387-450 25-87 (108)
330 PF11207 DUF2989: Protein of u 88.1 12 0.00027 30.1 11.8 80 382-462 116-198 (203)
331 PF13929 mRNA_stabil: mRNA sta 88.0 16 0.00035 31.4 13.2 136 170-305 142-287 (292)
332 PF13174 TPR_6: Tetratricopept 88.0 0.7 1.5E-05 24.2 2.7 23 57-79 7-29 (33)
333 KOG1586 Protein required for f 87.7 15 0.00032 30.5 17.6 66 336-401 159-224 (288)
334 PF11207 DUF2989: Protein of u 87.6 9.7 0.00021 30.7 9.6 72 173-245 123-197 (203)
335 PF04097 Nic96: Nup93/Nic96; 87.5 32 0.00069 34.1 20.8 18 417-434 515-532 (613)
336 KOG1308 Hsp70-interacting prot 87.4 0.56 1.2E-05 40.6 2.9 87 62-151 126-213 (377)
337 COG3947 Response regulator con 87.2 18 0.0004 31.0 16.8 61 409-470 281-341 (361)
338 KOG0276 Vesicle coat complex C 86.9 10 0.00022 36.1 10.6 132 16-184 618-749 (794)
339 PF00637 Clathrin: Region in C 86.5 0.61 1.3E-05 35.7 2.6 83 162-252 14-96 (143)
340 COG4455 ImpE Protein of avirul 86.5 4.6 9.9E-05 32.8 7.2 75 54-129 5-81 (273)
341 PF08424 NRDE-2: NRDE-2, neces 86.3 24 0.00052 31.5 15.8 102 45-148 14-130 (321)
342 PF13181 TPR_8: Tetratricopept 86.2 2.4 5.1E-05 22.4 4.2 29 408-436 2-30 (34)
343 PF02259 FAT: FAT domain; Int 85.9 27 0.00058 31.6 22.1 65 190-254 145-212 (352)
344 PRK09687 putative lyase; Provi 85.5 24 0.00052 30.8 26.7 37 412-451 240-276 (280)
345 PF07721 TPR_4: Tetratricopept 85.5 1.6 3.4E-05 21.6 2.9 19 448-466 7-25 (26)
346 PF00637 Clathrin: Region in C 85.1 0.45 9.8E-06 36.4 1.2 84 56-146 13-96 (143)
347 COG3947 Response regulator con 85.0 24 0.00052 30.4 15.7 61 228-289 281-341 (361)
348 KOG0376 Serine-threonine phosp 85.0 2.2 4.7E-05 39.0 5.5 107 17-130 9-115 (476)
349 KOG0530 Protein farnesyltransf 85.0 23 0.00049 30.0 12.8 89 387-477 93-182 (318)
350 PF13170 DUF4003: Protein of u 83.9 29 0.00063 30.5 21.9 20 175-194 81-100 (297)
351 KOG4642 Chaperone-dependent E3 83.9 24 0.00052 29.4 10.7 117 95-215 20-141 (284)
352 TIGR03504 FimV_Cterm FimV C-te 83.6 2.8 6.1E-05 24.1 3.7 26 412-437 4-29 (44)
353 PF06552 TOM20_plant: Plant sp 83.5 14 0.00031 29.2 8.5 108 66-185 7-136 (186)
354 COG5159 RPN6 26S proteasome re 83.3 27 0.00059 29.9 10.6 129 91-219 9-153 (421)
355 PF08424 NRDE-2: NRDE-2, neces 82.7 35 0.00076 30.5 16.5 121 347-476 47-188 (321)
356 KOG4642 Chaperone-dependent E3 82.1 29 0.00062 29.0 10.3 82 24-111 22-104 (284)
357 PRK10941 hypothetical protein; 81.6 11 0.00024 32.5 8.2 71 410-481 184-254 (269)
358 PF14689 SPOB_a: Sensor_kinase 81.6 4.2 9E-05 25.6 4.3 46 424-471 7-52 (62)
359 smart00028 TPR Tetratricopepti 80.9 3.8 8.3E-05 20.5 3.7 26 445-470 4-29 (34)
360 PF12862 Apc5: Anaphase-promot 80.9 11 0.00024 26.2 6.8 24 448-471 47-70 (94)
361 COG4455 ImpE Protein of avirul 80.8 17 0.00037 29.8 8.2 54 127-182 8-61 (273)
362 PF07163 Pex26: Pex26 protein; 80.6 30 0.00065 29.6 9.9 87 233-319 90-181 (309)
363 PF00244 14-3-3: 14-3-3 protei 79.7 36 0.00079 28.7 10.8 49 424-472 143-199 (236)
364 COG1747 Uncharacterized N-term 79.0 58 0.0013 30.7 23.7 50 387-436 184-234 (711)
365 PF10579 Rapsyn_N: Rapsyn N-te 78.9 4.8 0.0001 26.6 3.9 47 24-72 18-65 (80)
366 KOG2396 HAT (Half-A-TPR) repea 78.9 58 0.0013 30.6 28.7 241 175-436 301-559 (568)
367 KOG0890 Protein kinase of the 78.8 1.3E+02 0.0028 34.6 25.3 322 125-474 1388-1734(2382)
368 PF09986 DUF2225: Uncharacteri 78.6 37 0.0008 28.1 10.1 90 387-476 92-199 (214)
369 PF10579 Rapsyn_N: Rapsyn N-te 77.8 10 0.00023 25.1 5.2 49 419-467 18-68 (80)
370 TIGR02508 type_III_yscG type I 77.7 21 0.00046 24.9 7.7 79 27-115 20-98 (115)
371 PRK13184 pknD serine/threonine 77.6 96 0.0021 32.4 26.3 378 10-431 473-895 (932)
372 PRK09687 putative lyase; Provi 76.8 50 0.0011 28.8 29.0 233 83-341 35-277 (280)
373 COG1747 Uncharacterized N-term 76.8 68 0.0015 30.3 24.3 178 84-270 65-248 (711)
374 PRK10941 hypothetical protein; 76.3 31 0.00068 29.7 9.3 77 53-130 184-261 (269)
375 PF12862 Apc5: Anaphase-promot 75.1 24 0.00052 24.5 7.1 20 93-112 49-68 (94)
376 PF14853 Fis1_TPR_C: Fis1 C-te 74.9 2.4 5.2E-05 25.6 1.7 34 413-448 7-40 (53)
377 KOG4077 Cytochrome c oxidase, 74.3 15 0.00033 26.9 5.7 47 390-436 67-113 (149)
378 PF14561 TPR_20: Tetratricopep 74.2 26 0.00056 24.2 6.9 53 47-99 19-72 (90)
379 KOG0551 Hsp90 co-chaperone CNS 74.1 14 0.00029 32.4 6.5 98 50-148 81-181 (390)
380 KOG4507 Uncharacterized conser 72.2 45 0.00098 31.9 9.7 88 237-325 618-705 (886)
381 KOG0376 Serine-threonine phosp 71.6 10 0.00022 34.9 5.5 107 56-166 10-116 (476)
382 KOG4077 Cytochrome c oxidase, 71.5 32 0.00068 25.4 6.8 50 425-474 67-116 (149)
383 cd00280 TRFH Telomeric Repeat 71.4 50 0.0011 26.3 8.9 40 126-168 117-156 (200)
384 KOG4507 Uncharacterized conser 70.9 35 0.00077 32.6 8.7 92 387-479 622-713 (886)
385 smart00386 HAT HAT (Half-A-TPR 70.7 9.1 0.0002 19.6 3.4 28 26-57 1-28 (33)
386 KOG3364 Membrane protein invol 70.4 43 0.00094 25.1 8.8 74 404-478 29-107 (149)
387 PF07575 Nucleopor_Nup85: Nup8 69.8 1.2E+02 0.0026 29.9 18.7 76 281-358 390-465 (566)
388 PF11846 DUF3366: Domain of un 69.1 29 0.00062 28.2 7.4 31 405-435 142-172 (193)
389 KOG2063 Vacuolar assembly/sort 68.7 1.5E+02 0.0032 30.7 17.4 37 130-166 601-637 (877)
390 KOG2066 Vacuolar assembly/sort 68.2 1.4E+02 0.003 30.0 25.6 102 92-203 363-467 (846)
391 PRK11619 lytic murein transgly 68.1 1.4E+02 0.003 30.0 33.0 292 47-355 126-463 (644)
392 PF13934 ELYS: Nuclear pore co 66.8 63 0.0014 27.1 8.9 98 60-168 88-185 (226)
393 cd00280 TRFH Telomeric Repeat 66.8 51 0.0011 26.3 7.6 67 387-456 84-157 (200)
394 KOG0128 RNA-binding protein SA 66.7 1.5E+02 0.0033 30.0 29.6 96 12-113 113-218 (881)
395 COG0790 FOG: TPR repeat, SEL1 66.2 91 0.002 27.3 21.0 151 62-221 53-221 (292)
396 PF09670 Cas_Cas02710: CRISPR- 65.7 1.1E+02 0.0024 28.2 11.0 18 308-325 143-160 (379)
397 PF07575 Nucleopor_Nup85: Nup8 65.0 59 0.0013 32.0 9.7 95 120-219 372-466 (566)
398 smart00638 LPD_N Lipoprotein N 64.8 1.5E+02 0.0033 29.3 21.3 233 242-480 291-534 (574)
399 cd08819 CARD_MDA5_2 Caspase ac 63.6 44 0.00096 22.8 6.8 63 70-138 22-84 (88)
400 PF14689 SPOB_a: Sensor_kinase 63.1 22 0.00048 22.4 4.3 29 330-358 22-50 (62)
401 KOG3036 Protein involved in ce 62.4 95 0.0021 26.2 9.1 63 416-478 205-268 (293)
402 PHA02875 ankyrin repeat protei 62.1 1.4E+02 0.003 27.9 13.8 16 389-404 297-312 (413)
403 PF04910 Tcf25: Transcriptiona 61.5 1.3E+02 0.0028 27.5 18.9 58 127-184 110-167 (360)
404 PF11846 DUF3366: Domain of un 61.4 31 0.00066 28.0 6.2 42 71-114 132-173 (193)
405 PF14853 Fis1_TPR_C: Fis1 C-te 61.2 34 0.00075 20.7 5.0 30 448-477 7-36 (53)
406 PF11848 DUF3368: Domain of un 61.0 32 0.00069 20.2 4.9 34 417-450 12-45 (48)
407 KOG1308 Hsp70-interacting prot 60.9 8.3 0.00018 33.8 2.8 96 96-194 125-220 (377)
408 KOG4567 GTPase-activating prot 60.5 93 0.002 27.2 8.6 69 351-431 263-342 (370)
409 PF02184 HAT: HAT (Half-A-TPR) 59.8 16 0.00035 19.3 2.7 24 27-55 2-25 (32)
410 PF09670 Cas_Cas02710: CRISPR- 59.3 1.5E+02 0.0032 27.4 11.0 18 22-39 141-158 (379)
411 PF10366 Vps39_1: Vacuolar sor 59.2 58 0.0013 23.4 6.4 29 407-435 39-67 (108)
412 KOG2471 TPR repeat-containing 59.2 43 0.00094 31.2 6.9 67 409-477 621-690 (696)
413 COG0735 Fur Fe2+/Zn2+ uptake r 59.1 65 0.0014 24.7 7.1 25 197-221 26-50 (145)
414 PF11663 Toxin_YhaV: Toxin wit 59.1 13 0.00027 27.7 3.0 31 419-451 107-137 (140)
415 KOG0686 COP9 signalosome, subu 58.8 1.5E+02 0.0032 27.2 11.9 175 51-234 151-352 (466)
416 KOG4814 Uncharacterized conser 58.6 59 0.0013 31.6 7.8 56 55-111 399-454 (872)
417 KOG4521 Nuclear pore complex, 58.0 1.8E+02 0.0038 31.0 11.3 134 13-148 984-1131(1480)
418 KOG2422 Uncharacterized conser 57.8 1.9E+02 0.004 28.1 16.2 55 93-147 350-405 (665)
419 PF14561 TPR_20: Tetratricopep 57.3 61 0.0013 22.3 8.3 62 73-135 11-73 (90)
420 PF09986 DUF2225: Uncharacteri 56.8 1.1E+02 0.0025 25.3 10.1 24 127-150 172-195 (214)
421 PF11663 Toxin_YhaV: Toxin wit 56.5 16 0.00035 27.2 3.2 30 204-235 108-137 (140)
422 KOG0292 Vesicle coat complex C 56.4 2.4E+02 0.0053 29.0 21.0 96 272-367 1002-1120(1202)
423 PF09477 Type_III_YscG: Bacter 55.5 74 0.0016 22.8 8.1 81 25-115 19-99 (116)
424 TIGR01503 MthylAspMut_E methyl 55.1 1.5E+02 0.0032 27.8 9.5 163 241-424 69-257 (480)
425 PF11817 Foie-gras_1: Foie gra 54.8 70 0.0015 27.3 7.4 62 408-469 179-245 (247)
426 KOG0686 COP9 signalosome, subu 54.6 1.8E+02 0.0038 26.8 13.1 64 192-255 151-216 (466)
427 KOG2034 Vacuolar sorting prote 54.1 2.6E+02 0.0057 28.7 25.6 266 17-321 363-652 (911)
428 PRK11619 lytic murein transgly 52.1 2.6E+02 0.0057 28.1 35.9 338 90-467 104-464 (644)
429 PRK10564 maltose regulon perip 51.7 34 0.00073 29.8 4.9 41 407-447 257-297 (303)
430 PF04762 IKI3: IKI3 family; I 51.6 3.2E+02 0.007 29.0 17.5 59 5-63 687-745 (928)
431 KOG3807 Predicted membrane pro 51.5 1.8E+02 0.0038 25.9 11.6 138 131-287 195-337 (556)
432 COG0735 Fur Fe2+/Zn2+ uptake r 51.2 1.1E+02 0.0024 23.5 7.6 23 92-114 27-49 (145)
433 KOG4567 GTPase-activating prot 51.1 1.7E+02 0.0038 25.7 9.6 70 246-320 263-342 (370)
434 PF04190 DUF410: Protein of un 51.1 1.6E+02 0.0035 25.4 18.0 25 295-319 89-113 (260)
435 COG5108 RPO41 Mitochondrial DN 50.8 1.6E+02 0.0035 29.0 9.3 82 9-94 25-112 (1117)
436 PF05944 Phage_term_smal: Phag 50.5 61 0.0013 24.3 5.5 33 406-439 48-80 (132)
437 PRK10564 maltose regulon perip 50.4 54 0.0012 28.6 5.8 30 123-152 260-289 (303)
438 KOG0128 RNA-binding protein SA 50.4 2.9E+02 0.0064 28.1 31.7 201 84-290 112-341 (881)
439 PF13762 MNE1: Mitochondrial s 50.2 1.1E+02 0.0025 23.4 9.8 80 124-204 43-128 (145)
440 COG0790 FOG: TPR repeat, SEL1 50.1 1.8E+02 0.0038 25.5 22.7 85 97-187 53-144 (292)
441 COG4976 Predicted methyltransf 50.1 33 0.00071 28.5 4.3 56 22-81 5-60 (287)
442 KOG3364 Membrane protein invol 49.7 1.1E+02 0.0024 23.1 8.3 64 378-443 37-105 (149)
443 PF11848 DUF3368: Domain of un 49.6 53 0.0011 19.3 5.1 20 171-190 17-36 (48)
444 PF13762 MNE1: Mitochondrial s 49.5 1.2E+02 0.0025 23.3 11.1 80 195-274 43-128 (145)
445 COG4976 Predicted methyltransf 49.1 48 0.001 27.6 5.0 54 418-472 6-59 (287)
446 PRK13342 recombination factor 48.9 2.3E+02 0.005 26.5 17.7 20 345-364 244-263 (413)
447 PRK09857 putative transposase; 48.0 2E+02 0.0042 25.4 9.5 68 410-478 209-276 (292)
448 PF11817 Foie-gras_1: Foie gra 48.0 1.2E+02 0.0025 26.0 7.7 22 196-217 183-204 (247)
449 PF10255 Paf67: RNA polymerase 47.9 84 0.0018 29.0 7.0 99 10-112 70-191 (404)
450 PF04097 Nic96: Nup93/Nic96; 47.6 3E+02 0.0066 27.5 22.9 88 233-325 265-356 (613)
451 cd08819 CARD_MDA5_2 Caspase ac 47.5 90 0.0019 21.4 6.9 37 308-349 48-84 (88)
452 COG5191 Uncharacterized conser 46.7 51 0.0011 28.8 5.1 77 46-124 103-180 (435)
453 TIGR02508 type_III_yscG type I 45.8 1.1E+02 0.0023 21.7 7.3 79 387-472 20-98 (115)
454 PRK14700 recombination factor 45.3 2.2E+02 0.0047 25.1 16.7 179 276-471 40-233 (300)
455 KOG1586 Protein required for f 45.2 1.9E+02 0.0041 24.4 18.9 18 22-39 24-41 (288)
456 KOG1839 Uncharacterized protei 44.9 2.7E+02 0.0058 30.1 10.6 126 59-184 941-1085(1236)
457 COG4259 Uncharacterized protei 44.7 1.1E+02 0.0024 21.5 5.6 52 70-123 57-108 (121)
458 PF09454 Vps23_core: Vps23 cor 43.6 84 0.0018 20.1 4.6 49 405-454 6-54 (65)
459 PF04910 Tcf25: Transcriptiona 43.5 2.6E+02 0.0057 25.6 20.6 57 303-359 110-167 (360)
460 KOG0292 Vesicle coat complex C 42.6 3.7E+02 0.0079 27.9 10.5 22 448-469 912-933 (1202)
461 PF04090 RNA_pol_I_TF: RNA pol 42.5 1.5E+02 0.0033 24.2 7.0 62 408-470 42-104 (199)
462 KOG2471 TPR repeat-containing 42.3 3.1E+02 0.0067 26.1 13.7 105 236-342 250-380 (696)
463 KOG2659 LisH motif-containing 42.2 2.1E+02 0.0044 24.0 8.6 18 94-111 73-90 (228)
464 KOG3677 RNA polymerase I-assoc 41.8 2.3E+02 0.0049 26.2 8.4 65 204-271 362-426 (525)
465 PF09454 Vps23_core: Vps23 cor 41.7 67 0.0015 20.5 4.0 29 87-115 10-38 (65)
466 KOG0991 Replication factor C, 41.7 2.2E+02 0.0047 24.1 12.8 91 236-329 169-271 (333)
467 cd07153 Fur_like Ferric uptake 41.5 1E+02 0.0023 22.2 5.7 38 62-99 12-49 (116)
468 KOG4521 Nuclear pore complex, 40.2 5.1E+02 0.011 28.0 12.5 121 87-215 985-1126(1480)
469 KOG0545 Aryl-hydrocarbon recep 39.9 2.4E+02 0.0051 24.0 12.6 102 334-436 181-293 (329)
470 PRK11639 zinc uptake transcrip 39.7 1.8E+02 0.0039 23.0 7.1 20 203-222 37-56 (169)
471 KOG3677 RNA polymerase I-assoc 39.5 3.2E+02 0.0068 25.4 11.5 65 239-306 362-426 (525)
472 PRK09857 putative transposase; 39.2 2.6E+02 0.0057 24.6 8.6 66 88-154 209-274 (292)
473 COG5108 RPO41 Mitochondrial DN 39.0 2.7E+02 0.0059 27.6 8.9 91 231-324 33-131 (1117)
474 PF01475 FUR: Ferric uptake re 38.8 1E+02 0.0022 22.6 5.3 45 55-99 12-56 (120)
475 PRK13341 recombination factor 38.7 4.5E+02 0.0098 27.0 17.5 82 378-459 264-350 (725)
476 PRK12798 chemotaxis protein; R 38.0 3.4E+02 0.0073 25.3 20.9 192 170-366 126-330 (421)
477 COG5116 RPN2 26S proteasome re 38.0 3.4E+02 0.0074 26.4 9.2 79 140-220 159-237 (926)
478 KOG0687 26S proteasome regulat 38.0 3E+02 0.0064 24.6 14.9 174 134-310 36-230 (393)
479 PF04090 RNA_pol_I_TF: RNA pol 38.0 1.9E+02 0.0042 23.6 6.9 59 53-112 44-103 (199)
480 PF10516 SHNi-TPR: SHNi-TPR; 37.6 75 0.0016 17.6 3.8 27 444-470 3-29 (38)
481 COG4941 Predicted RNA polymera 36.7 3.2E+02 0.0069 24.6 10.0 128 347-477 272-400 (415)
482 KOG2063 Vacuolar assembly/sort 36.6 5.2E+02 0.011 27.1 27.8 58 15-79 310-375 (877)
483 PRK07003 DNA polymerase III su 36.1 5.1E+02 0.011 26.8 14.7 46 242-289 180-226 (830)
484 PF10475 DUF2450: Protein of u 35.1 3.2E+02 0.0068 24.1 10.9 23 405-427 195-217 (291)
485 COG5187 RPN7 26S proteasome re 34.9 3.1E+02 0.0068 24.0 12.4 172 137-310 55-241 (412)
486 PRK08691 DNA polymerase III su 34.6 5.1E+02 0.011 26.3 11.9 87 387-476 179-279 (709)
487 KOG0396 Uncharacterized conser 34.3 2.2E+02 0.0048 25.7 7.1 30 8-37 112-141 (389)
488 PF14669 Asp_Glu_race_2: Putat 33.8 2.6E+02 0.0056 22.7 14.7 23 378-400 137-160 (233)
489 KOG3824 Huntingtin interacting 33.2 1.6E+02 0.0034 25.9 5.9 52 61-113 127-178 (472)
490 PF15297 CKAP2_C: Cytoskeleton 33.0 3.6E+02 0.0078 24.4 8.2 65 409-475 105-173 (353)
491 KOG0991 Replication factor C, 32.1 3.2E+02 0.0068 23.2 15.0 98 318-418 181-283 (333)
492 PF04762 IKI3: IKI3 family; I 32.1 6.5E+02 0.014 26.8 17.0 113 226-356 812-926 (928)
493 PF11123 DNA_Packaging_2: DNA 32.1 1.5E+02 0.0032 19.4 5.0 33 387-420 12-44 (82)
494 PF03745 DUF309: Domain of unk 31.9 1.4E+02 0.0029 18.9 5.8 49 417-465 9-62 (62)
495 PF02607 B12-binding_2: B12 bi 31.8 74 0.0016 21.0 3.3 33 420-452 14-46 (79)
496 COG4259 Uncharacterized protei 31.6 1.9E+02 0.0041 20.4 6.9 56 391-448 56-111 (121)
497 KOG1839 Uncharacterized protei 31.1 7.3E+02 0.016 27.1 11.6 127 19-148 939-1085(1236)
498 cd07153 Fur_like Ferric uptake 31.0 1.8E+02 0.0039 20.9 5.6 35 134-168 14-48 (116)
499 PF00244 14-3-3: 14-3-3 protei 30.2 3.4E+02 0.0074 23.0 10.3 59 89-147 5-64 (236)
500 KOG2659 LisH motif-containing 29.9 3.3E+02 0.0072 22.8 8.5 97 378-474 31-135 (228)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-65 Score=501.12 Aligned_cols=399 Identities=21% Similarity=0.341 Sum_probs=208.5
Q ss_pred cccccccccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 2 GVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
+.++++.|+. ..+..++..+.+.|.+++|+.+|+.+. .||..+|+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 397 ~~~gvv~~~~-v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl 468 (1060)
T PLN03218 397 EKRGLLDMDK-IYHAKFFKACKKQRAVKEAFRFAKLIR-------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468 (1060)
T ss_pred HhCCCCCchH-HHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC
Confidence 3444444432 223334444444555555555544444 14555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011463 82 DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161 (485)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (485)
.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+
T Consensus 469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCChHHHHHHHHhhhh--CCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 011463 162 IKALCKNSGTMDAAFKIFREMPN--RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239 (485)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 239 (485)
+..|++. |++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.
T Consensus 549 I~a~~k~-G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 549 ISACGQS-GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 5555554 555555555555543 3445555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..|+..+|+.++.+|++.|++++|..+|
T Consensus 628 G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHH
Q 011463 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSM 398 (485)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~ 398 (485)
++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|. .++.+|++. +.+.|.++++.|
T Consensus 708 ~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~-------sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS-------ILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555554 455555544 555555555555
Q ss_pred HhCCCccchhhHHHHHHH
Q 011463 399 RNRSISVDSLTYSSLITC 416 (485)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~ 416 (485)
.+.|+.||..+|+.++..
T Consensus 781 ~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHcCCCCCHHHHHHHHHH
Confidence 555555555555555443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-64 Score=493.51 Aligned_cols=453 Identities=16% Similarity=0.265 Sum_probs=429.9
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCC-CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANG-FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
-.+..+...+.+.|++++|+++|+.|. ..+ .+++...+..++..|.+.|.+++|..+++.|.. |+..+|+.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~---~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDME---KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 345667788889999999999999999 555 456788888999999999999999999999875 799999999
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|++. |+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH--CCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET--KACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
+++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 578999999999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (485)
+.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchh
Q 011463 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSL 408 (485)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~ 408 (485)
+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+ .++.+|++. ++++|.++|++|...|+.||..
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN-------~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN-------ALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999888 999999999 9999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-----------------------cCcHHHHHHHH
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD-----------------------RRKMRQAAELL 465 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~ 465 (485)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ .+..++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999998865442 12357899999
Q ss_pred HHHHHcCCCccchhc
Q 011463 466 LLELMNKCVEAEVDI 480 (485)
Q Consensus 466 ~~~~~~~~~~~~~~~ 480 (485)
++|++.|..|+.+++
T Consensus 836 ~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 836 RETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHCCCCCCHHHH
Confidence 999999998887643
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-61 Score=482.71 Aligned_cols=437 Identities=19% Similarity=0.245 Sum_probs=358.7
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
.+++..++..+.+.|++++|+++|+.|. ..+..||..+|+.++.+|...+++..+.+++..+.+.|..|+..+++.+
T Consensus 152 ~~~~n~li~~~~~~g~~~~A~~~f~~M~---~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 152 LFSWNVLVGGYAKAGYFDEALCLYHRML---WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred eeEHHHHHHHHHhCCCHHHHHHHHHHHH---HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 3456678888999999999999999998 6799999999999999998888999999999999888888889999999
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
+.+|++.|+++.|..+|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++. |+
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~-g~ 303 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL-GD 303 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CC
Confidence 9999999999999999999864 688899999999999999999999999999999999999999999999888 99
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 251 (485)
.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999863 6888999999999999999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCH
Q 011463 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (485)
|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|..|+..+++.++.+|.+.|++++|.++|++|.+ +|.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCe
Confidence 9988999999999999999999999999999999999999888999999999999999999999999888863 567
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhh----------------------------hHHHHHHHH
Q 011463 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVVQGL 383 (485)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~l~~~~ 383 (485)
.+|+.++.+|++.|+.++|..+|++|.. ++.||..+|...+. +++.++..|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 7888888888888888888888888875 47787777663222 233555555
Q ss_pred hcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHH
Q 011463 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462 (485)
Q Consensus 384 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 462 (485)
++. +.++|.++|+.+ .+|..+||.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 555 555555555554 23556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHH
Q 011463 463 ELLLLELM 470 (485)
Q Consensus 463 ~~~~~~~~ 470 (485)
++|+.|.+
T Consensus 610 ~~f~~M~~ 617 (857)
T PLN03077 610 EYFHSMEE 617 (857)
T ss_pred HHHHHHHH
Confidence 66666663
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-59 Score=458.00 Aligned_cols=433 Identities=20% Similarity=0.311 Sum_probs=363.4
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
+...++..+.+.|++++|+++|+.+.. ..+..||..+|+.++.+|.+.++++.|.+++..|.+.|..|+..+++.++.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~--~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEA--GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 667888999999999999999999983 234679999999999999999999999999999999999999999999999
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++..++.. |..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL-GSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC-CcHH
Confidence 99999999999999999974 799999999999999999999999999999999999999988888888877 8888
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888753 477788888888888888888888888888
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHh
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (485)
+.|+.||..||+.++.+|++.|++++|.+++..+.+.|..||..+++.++.+|++.|++++|.++|++|. .||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 8888888888888888888888888888888888888888888888888888888888888888888775 357778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHh-CCCccchhhHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN-RSISVDSLTYS 411 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~-~~~~~~~~~~~ 411 (485)
|+.++.+|++.|+.++|.++|++|.+.|+.||..||. .++.+|... ..++|.++|+.|.+ .++.|+..+|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-------~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL-------AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH-------HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 8888888888888888888888888888888888877 788888777 78888888888864 57777888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+.+.|..+++++++.
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 8888888888888888777665 35677777777777766666666666666666543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.9e-59 Score=462.68 Aligned_cols=432 Identities=17% Similarity=0.227 Sum_probs=395.8
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
++++.++..|.+.|++++|+++|+.|. ..++.||..+|+.++.+|.+.|+.+.|.+++..+.+.|..|+..+|+.++
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~---~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMR---ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHH---HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 455678888999999999999999998 67899999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.++++. |++
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~ 405 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDL 405 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chH
Confidence 999999999999999999863 788899999999999999999999999999999999999999999999988 999
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 252 (485)
+.|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865 58889999999999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHH
Q 011463 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332 (485)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (485)
.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|..++..+++.++.+|.+.|++++|..+|+.+ .+|..
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~ 555 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChh
Confidence 86 4899999999999999999999999999999999999999999999999999999999999999886 57999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHH-hCCCccchhhH
Q 011463 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR-NRSISVDSLTY 410 (485)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~-~~~~~~~~~~~ 410 (485)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..||. .++.+|.+. ..++|.++|+.|. +.++.|+..+|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-------~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI-------SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH-------HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 99999999999999999999999999999999999998 899999988 9999999999998 67899999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 411 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
+.++++|++.|++++|.+++++|. +.||..+|.+++.+|...|+.+.+....+++++..
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 999999999999999999999984 67898899888888877777777777777776643
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.1e-59 Score=452.26 Aligned_cols=438 Identities=16% Similarity=0.221 Sum_probs=417.3
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
+...++..++.++.+.++++.|.+++..+. ..|..||+.+|+.++..|.+.|+++.|.++|++|.+ |+..+|+
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~---~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVE---SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 455778899999999999999999999999 789999999999999999999999999999999964 6899999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 169 (485)
.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|++.|..+.+.+++..+.+.|+.||..+++.++..|++.
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~- 272 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC- 272 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|++++|.++|+.|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 273 g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999975 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (485)
..|.+.|+.||..+++.++.+|++.|++++|.++|+.|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.|
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999854 699999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccch
Q 011463 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVL-GGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407 (485)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~ 407 (485)
|..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|. .++..+++. +.++|.++++++ +..|+.
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~-------~li~~l~r~G~~~eA~~~~~~~---~~~p~~ 494 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA-------CMIELLGREGLLDEAYAMIRRA---PFKPTV 494 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH-------hHHHHHHhcCCHHHHHHHHHHC---CCCCCH
Confidence 999999999999999999999999999986 59999999988 999999999 999999998865 567899
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLP-DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
.+|+.++.+|...|+++.|..+++++.+. .| +..+|..++..|.+.|++++|.++++.|.+.|...
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999765 45 46799999999999999999999999999999754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.2e-30 Score=262.37 Aligned_cols=435 Identities=11% Similarity=0.106 Sum_probs=258.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
...++..+.+.|++++|+.+++.+. ...++++.++..++..+...|++++|.+.|+++.+..+. +...+..++..
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 508 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLE----KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARI 508 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHH
Confidence 3445666677777777777777776 234556666777777777777777777777777666543 45566666667
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 174 (485)
+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..+...+... |++++
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~ 585 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK-GQLKK 585 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC-CCHHH
Confidence 777777777777777776653 3456666666666767777777777777666543 23344455555555555 67777
Q ss_pred HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
|..+++.+.+.. +.+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777766666543 2355666666666666677777776666665542 22445566666666666666666666666665
Q ss_pred CCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhH
Q 011463 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334 (485)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (485)
.. +.+..++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...++.+...+ |+..++
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 43 3345556666666666666666666666665553 2245555555666666666666666666665542 333455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHH
Q 011463 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413 (485)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 413 (485)
..++.++...|++++|.+.++++.+.. |+.. .++..+...+... +.++|...|+++.+..+. ++.+++.+
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l 810 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH--PNDA------VLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNL 810 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH------HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 555566666666666666666655532 2211 1122444444444 566666666666555443 45555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 414 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
+..+...|+ .+|+..++++.+.. +.+..++..+..++...|++++|.++++++++.+..
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 555555555 55555555555441 223334444555555556666666666666555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-29 Score=257.71 Aligned_cols=435 Identities=14% Similarity=0.081 Sum_probs=349.2
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
....+..++.++...|++++|++.|+++. ...+.+...+..++..+...|++++|.+.++.+....+. +..++..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 538 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKAL----SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILA 538 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHH----hhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 34456677888888999999999999888 233556777888888888999999999999998887655 6778888
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 170 (485)
+...+.+.|++++|...++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+...+... |
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~ 615 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA-G 615 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc-C
Confidence 8888888999999999999887764 4567778888888889999999999999888754 45567777778787777 9
Q ss_pred ChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 011463 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 250 (485)
++++|...++.+.+... .+...+..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988887643 366778888888889999999999999887753 3357788888888899999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCC
Q 011463 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (485)
.+.+.. +.+...+..+...+...|++++|...++.+...+. +..++..+..++...|++++|...++.+.+.. +.+
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 888775 45677778888888889999999999998887643 44667778888888999999999998888764 567
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhh
Q 011463 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409 (485)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 409 (485)
...+..+...|...|++++|...|+++.+.. |+.. .+++.+...+... + .+|+..++++....+. ++..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~------~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~ 839 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNA------VVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAI 839 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCH------HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHH
Confidence 7888888888888999999999999988754 3321 1223666666666 6 7799999988877555 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 410 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+..+..++...|++++|.+.|+++++.+ +.+..++..++.++.+.|++++|.++++++++
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 7888888888999999999999998875 34777888888889999999999999988863
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-24 Score=190.16 Aligned_cols=438 Identities=13% Similarity=0.125 Sum_probs=357.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
-..++.-..+.||+.+|++.-...- ...+.+......+-..+....+++.....-...++..+. -.++|..+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~----~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~ 125 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVG----QEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANI 125 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhh----ccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHH
Confidence 4456777888999999999887766 222444555555556667777777666665556665443 56889999999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 174 (485)
+-..|++++|+..++.+.+.. +.....|..+..++...|+.+.|.+.|...++.+ |+.....+-+..+.+..|++++
T Consensus 126 ~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccch
Confidence 999999999999999999864 4468899999999999999999999999999854 8888887777777777799999
Q ss_pred HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT-VVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
|...+.+..+.... -...|+.|...+...|+...|++.|++..+. .|+ ...|..|...|...+.+++|...+.+..
T Consensus 203 a~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 203 AKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 99999888876432 4568899999999999999999999999875 333 5678889999999999999999999888
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHh
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (485)
... +.....+..+...|...|+.+.|++.+++.++..+. =+..|+.+..++-..|++.+|...+++..... +.-...
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 763 335677888888899999999999999999987432 46789999999999999999999999988864 345678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSS 412 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 412 (485)
.+.|...|.+.|.+++|..+|....+ +.|.-. ..++.+...|-.+ +.++|+..|++.+...+. -...|+.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~--v~p~~a------aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~N 427 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALE--VFPEFA------AAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSN 427 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHh--hChhhh------hhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHh
Confidence 88999999999999999999999887 344422 3445777777777 999999999999876443 4578899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 413 LITCFCKKGDIHKSARIVDELVLDGCLPDE-GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
+...|...|+.+.|++.+.+++.- .|.. ..++.|...|...|+..+|+.-++.+++..+..++
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 999999999999999999999975 5654 46788999999999999999999999997765554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=6.2e-23 Score=210.48 Aligned_cols=429 Identities=13% Similarity=0.085 Sum_probs=330.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH-HHH--------
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE-DIF-------- 88 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~-------- 88 (485)
....+...|++++|+..|++++ ...|.++.++..+..++.+.|++++|++.|+++.+..+.... ..|
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL----~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAV----RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 3567788999999999999999 334668899999999999999999999999999987654321 112
Q ss_pred ----HHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 011463 89 ----LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIK 163 (485)
Q Consensus 89 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~ 163 (485)
......+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.|+++.+.. |+ ...+..+..
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~ 427 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 223456778999999999999999874 4567788889999999999999999999999854 44 444444544
Q ss_pred HHHhcCCChHHHHHHHHhhhhCCCC--------CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011463 164 ALCKNSGTMDAAFKIFREMPNRGCT--------PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235 (485)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 235 (485)
.+ .. ++.++|..+++.+...... .....+..+...+...|++++|++.|++..+... .+...+..+...
T Consensus 428 l~-~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~ 504 (1157)
T PRK11447 428 LY-RQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQD 504 (1157)
T ss_pred HH-Hh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 44 44 6789999998876543110 0123455677888899999999999999988642 356677888999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChh---------hHHHHHHHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV---------TYSTLLNGL 306 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~ 306 (485)
|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+......+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999998763 3355555555666778999999999998865432222211 123456678
Q ss_pred HhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC
Q 011463 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (485)
...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+. .|+.. .+...+...+...
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~------~a~~~la~~~~~~ 650 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNA------DARLGLIEVDIAQ 650 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH------HHHHHHHHHHHHC
Confidence 899999999999872 2556777888999999999999999999999985 35432 2233777777777
Q ss_pred -ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---ChhhHHHHHHHHHhcCcHHH
Q 011463 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC--LP---DEGTWSAVMTALWDRRKMRQ 460 (485)
Q Consensus 387 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~ 460 (485)
++++|.+.++.+.+..+. +...+..+..++...|++++|.++++++....- +| +...+..+...+...|++++
T Consensus 651 g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 651 GDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 999999999998876544 566777888899999999999999999987521 12 12355566788889999999
Q ss_pred HHHHHHHHHHc
Q 011463 461 AAELLLLELMN 471 (485)
Q Consensus 461 A~~~~~~~~~~ 471 (485)
|++.|++++..
T Consensus 730 A~~~y~~Al~~ 740 (1157)
T PRK11447 730 ALETYKDAMVA 740 (1157)
T ss_pred HHHHHHHHHhh
Confidence 99999999863
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=7e-22 Score=202.80 Aligned_cols=448 Identities=13% Similarity=0.046 Sum_probs=294.9
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhH----------------HHHHHHHHhcCCcchHHHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTF----------------SLMISKLVSANQFRPAEDLLD 74 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~ 74 (485)
.+-....++..+.+.|+.++|.+.++++.+ ..|.++... ..+++.+...|++++|.+.|+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~----~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQ----LAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 344455667777888888888888888872 223443332 233456778888888888888
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---
Q 011463 75 RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI--- 151 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 151 (485)
.+...+++................|+.++|++.++++.+.. |.+...+..+...+...|+.++|++.++++.....
T Consensus 137 ~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 137 KLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 88776543211111112222234578888888888887764 44666777888888888888888888887754210
Q ss_pred ---------------C--------------CCHHHHH---------------------HHHHHHHhcCCChHHHHHHHHh
Q 011463 152 ---------------Q--------------PCVASLN---------------------VLIKALCKNSGTMDAAFKIFRE 181 (485)
Q Consensus 152 ---------------~--------------~~~~~~~---------------------~ll~~~~~~~~~~~~a~~~~~~ 181 (485)
. |+..... .....+... |++++|+..|++
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~-g~~~~A~~~l~~ 294 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDS-GQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 0 1100000 011223344 888888888888
Q ss_pred hhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-ChhhH------------HHHHHHHHccCCHHHHHHH
Q 011463 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP-TVVTY------------TSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~ll~~~~~~~~~~~a~~~ 248 (485)
..+.... +...+..+..++.+.|++++|+..|++..+..... ....+ ......+.+.|++++|...
T Consensus 295 aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 295 AVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8876432 67788888888888899999998888887653221 11111 1223456678888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHH---------------------------
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST--------------------------- 301 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------- 301 (485)
|+++.+.. +.+...+..+..++...|++++|.+.|+++++.... +...+..
T Consensus 374 ~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 374 YQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 88888764 335666777788888888888888888888775332 2222222
Q ss_pred ---------------HHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 011463 302 ---------------LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366 (485)
Q Consensus 302 ---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 366 (485)
+...+...|++++|...+++..+.. +-+...+..+...|.+.|++++|...++++.+.. |+.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~ 528 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PND 528 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC
Confidence 2233456788888888888888764 3456677788888888999999999888887632 322
Q ss_pred ccccc--------------------------------------------------------------------hhhhHHH
Q 011463 367 LTWSL--------------------------------------------------------------------HIRIHNT 378 (485)
Q Consensus 367 ~~~~~--------------------------------------------------------------------~~~~~~~ 378 (485)
..... ...++..
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~ 608 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLT 608 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHH
Confidence 11000 0011222
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC
Q 011463 379 VVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP-DEGTWSAVMTALWDRR 456 (485)
Q Consensus 379 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 456 (485)
+...+... ++++|+..|+++....+. +...+..++..+...|++++|++.++.+.+. .| +...+..+..++...|
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCC
Confidence 33344444 778888888888777655 6777778888888888888888888877754 33 3445566777777888
Q ss_pred cHHHHHHHHHHHHHcCC
Q 011463 457 KMRQAAELLLLELMNKC 473 (485)
Q Consensus 457 ~~~~A~~~~~~~~~~~~ 473 (485)
++++|.++++++++...
T Consensus 686 ~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CHHHHHHHHHHHhhhCc
Confidence 88888888888887643
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=3.2e-22 Score=192.91 Aligned_cols=407 Identities=13% Similarity=0.036 Sum_probs=269.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
......+.+.|++++|+..|++++ ...|++..|..+..+|.+.|++++|++.++.+++.++. +...+..+..+|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al-----~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~ 204 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAI-----ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 356778899999999999999999 34567888999999999999999999999999998765 778899999999
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE--------------------------- 148 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------- 148 (485)
...|++++|+..|..+...+ +.+......++..+........+...++.-..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 99999999999887765542 11111111111111111111111111110000
Q ss_pred cCCCCCHH-HHHHHHH--HHHhcCCChHHHHHHHHhhhhCC-C-CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 011463 149 IGIQPCVA-SLNVLIK--ALCKNSGTMDAAFKIFREMPNRG-C-TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223 (485)
Q Consensus 149 ~~~~~~~~-~~~~ll~--~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (485)
....+... .+..+.. .-.+..+++++|.+.|+...+.+ . +.....+..+..++...|++++|+..|++..+.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 00000000 0000000 00012257788888888877654 1 2245567777777888888888888888877652 2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011463 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303 (485)
Q Consensus 224 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (485)
.....|..+..++...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|++.++..+. +...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHH
Confidence 235567777777888888888888888887764 345677777888888888888888888888776432 566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccccchhhhHHHHHHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR-LTWSLHIRIHNTVVQG 382 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 382 (485)
.++.+.|++++|+..+++..... +.+...++.+..++...|++++|...|++..+.. |+. ..+......++.....
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHH
Confidence 78888888888888888877653 4456778888888888888888888888877643 321 1111111111122222
Q ss_pred HhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 383 LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 383 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
+... ++++|.+++++.....+. +...+..+...+...|++++|++.|++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223 777888888877766543 4456777788888888888888888887764
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=3e-21 Score=185.40 Aligned_cols=332 Identities=12% Similarity=0.069 Sum_probs=275.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
-.++..+.++|++++|+.+++.++ ...+.++..+..++.++...|++++|.+.++++....|. +...+..+...+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l----~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l 120 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRV----LTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHH----HhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 345777889999999999999998 344666777888888889999999999999999998876 788899999999
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
...|++++|+..++++.+.. +.+...+..+..++...|++++|...++.+.... |+.......+..+... |++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~-g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNK-SRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHc-CCHHHH
Confidence 99999999999999998864 4567888999999999999999999999887754 3333222223346666 999999
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH----HHHHHHH
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE----AMRLFEE 251 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~ 251 (485)
...++.+.+....++......+..++...|++++|...+++..... +.+...+..+...+...|++++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999998876544445555666788999999999999999998764 3467778889999999999986 8999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCH
Q 011463 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (485)
..+.. +.+...+..+...+.+.|++++|...++++....+. +...+..+..++...|++++|...++++...+ |+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccc
Confidence 98874 446778889999999999999999999999987543 56778888999999999999999999998763 443
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011463 332 -GLYGKIISCFCDIGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 332 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (485)
..+..+..++...|+.++|...|++..+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344456778899999999999999998753
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=5e-22 Score=174.40 Aligned_cols=400 Identities=15% Similarity=0.081 Sum_probs=327.8
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
+-..+.+..+++.....-..++ +..+.-.++|+.+...+...|++++|+.+++.+++..++ ..+.|..+..++..
T Consensus 88 l~ai~~q~~r~d~s~a~~~~a~----r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~ 162 (966)
T KOG4626|consen 88 LSAIFFQGSRLDKSSAGSLLAI----RKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVT 162 (966)
T ss_pred ehhhhhcccchhhhhhhhhhhh----hccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHh
Confidence 4456777778887777666666 344566889999999999999999999999999999876 78999999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhh-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCChHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKS-YITVLAILVEENQLKLAFRFYRHMREIGIQPCVA-SLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~a 175 (485)
.|+.+.|.+.|...++.+ |+... ...+...+-..|+.++|...|.+.++.. |... .|..+...+-.. |+...|
T Consensus 163 ~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~-Gei~~a 237 (966)
T KOG4626|consen 163 QGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQ-GEIWLA 237 (966)
T ss_pred cCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhc-chHHHH
Confidence 999999999999998854 55443 3445556667899999999999998843 5443 455555554444 999999
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+..|++.++.++. -...|-.|...|...+.++.|...|.+..... +.....+..+...|...|.++-|+..+++..+.
T Consensus 238 iq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 238 IQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred HHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 9999999987433 46788899999999999999999999987752 335677888888899999999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHH
Q 011463 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335 (485)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (485)
. +-=+..|+.+..++...|+..+|.+.+.+.+..... .....+.|...+...|.+++|..+|....+.. +--...++
T Consensus 316 ~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~n 392 (966)
T KOG4626|consen 316 Q-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHN 392 (966)
T ss_pred C-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhh
Confidence 3 223678999999999999999999999999987433 57788899999999999999999999988753 22356789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHH
Q 011463 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414 (485)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 414 (485)
.|...|-+.|++++|+..+++.++ +.|+-. ..++.+...|... +...|.+.+.+.+..++. -....+.|.
T Consensus 393 NLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA------da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLa 463 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALR--IKPTFA------DALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLA 463 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHh--cCchHH------HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHH
Confidence 999999999999999999999987 556532 3344666777776 999999999999987655 467788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011463 415 TCFCKKGDIHKSARIVDELVLDGCLPDEG 443 (485)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 443 (485)
..|...|++.+|+.-+++..+. +||..
T Consensus 464 si~kDsGni~~AI~sY~~aLkl--kPDfp 490 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKL--KPDFP 490 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHcc--CCCCc
Confidence 9999999999999999999975 67654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=5.3e-22 Score=182.20 Aligned_cols=304 Identities=14% Similarity=0.111 Sum_probs=229.0
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC---HhhHHHHHHHHHH
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT---PKSYITVLAILVE 132 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 132 (485)
....+...|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888887654 667788888888888888888888888876421111 2456777888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCC----HHhHHHHHHHHHHcCCHh
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD----SYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 208 (485)
.|++++|..+|+++.+.. +++..++..+...+... |++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 888888888888887653 34566777777777777 888888888888877643322 224556777788889999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 011463 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
+|.+.|+++.+.. +.+...+..+...+.+.|++++|...++++.+.+......++..++.+|.+.|++++|...++.+.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988887753 234566777888888899999999999988876433234567788888999999999999999888
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 011463 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD---IGKYQEAANFLDEMVLGGITPN 365 (485)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~ 365 (485)
+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|+
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 763 45556678888888999999999999888776 5777788877776664 4588889999998888766666
Q ss_pred cc
Q 011463 366 RL 367 (485)
Q Consensus 366 ~~ 367 (485)
..
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 55
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=3.7e-20 Score=177.93 Aligned_cols=384 Identities=12% Similarity=0.094 Sum_probs=288.4
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
.+.++.+|+.---.|....... ..--.+..-...++..+.+.|++++|..+++......+. +...+..++.+....|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKV-RDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQ 91 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhh-hhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCC
Confidence 3567888988777777665211 111122334556678888999999999999999998877 56677777788888999
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIF 179 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~ 179 (485)
+++|+..|+++.+.. |.+...+..+...+...|++++|...++++.+.. |+ ...+..+...+... |++++|...+
T Consensus 92 ~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~-g~~~eA~~~~ 167 (656)
T PRK15174 92 PDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLM-DKELQAISLA 167 (656)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHC-CChHHHHHHH
Confidence 999999999999875 5567888889999999999999999999999854 54 45566666666666 9999999999
Q ss_pred HhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011463 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 259 (485)
+.+...... +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++.+.+.. +.
T Consensus 168 ~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~ 244 (656)
T PRK15174 168 RTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LD 244 (656)
T ss_pred HHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 988776433 33344333 3478899999999999998776433344455556778889999999999999998875 44
Q ss_pred CHhhHHHHHHHHHcCCChHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHH
Q 011463 260 NVFTYSSLMDGLCKGGCSSQ----AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335 (485)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (485)
+...+..+...+...|++++ |...++++.+..+. +...+..+...+...|++++|...+++..... +.+...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 67778888999999999985 89999999887443 67788899999999999999999999988864 44566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHH
Q 011463 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414 (485)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 414 (485)
.+..++.+.|++++|...++++.+. .|+...+. ..+...+... +.++|...|++..+..+.-.
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~------~~~a~al~~~G~~deA~~~l~~al~~~P~~~-------- 386 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLARE--KGVTSKWN------RYAAAALLQAGKTSEAESVFEHYIQARASHL-------- 386 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH------HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--------
Confidence 8889999999999999999998874 35433221 1223344444 77788888877776643311
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 011463 415 TCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
...+++|...+.+..+.
T Consensus 387 -----~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 387 -----PQSFEEGLLALDGQISA 403 (656)
T ss_pred -----hhhHHHHHHHHHHHHHh
Confidence 23445566666666654
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.8e-21 Score=178.69 Aligned_cols=306 Identities=13% Similarity=0.062 Sum_probs=251.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC---HHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT---EDIFLSIC 92 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 92 (485)
......+...|++++|+..|+++. ...|.+..++..++..+...|++++|..+++.+......++ ...+..++
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEML----KVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHH----hcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 345667778999999999999999 23456778899999999999999999999999987643221 24678889
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhc
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV----ASLNVLIKALCKN 168 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~ 168 (485)
..|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998763 456788999999999999999999999999886532221 1234455556666
Q ss_pred CCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 011463 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 248 (485)
|++++|...++++.+... .+...+..+...+.+.|++++|.+.|+++...+......+++.+..+|...|++++|...
T Consensus 194 -~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 194 -GDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred -CCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988642 356788889999999999999999999998764333346678899999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHhHC
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK---EGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 325 (485)
++.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9999886 456666788999999999999999999998886 5677788888877664 55899999999999988
Q ss_pred CCCCCHH
Q 011463 326 GLKPDAG 332 (485)
Q Consensus 326 ~~~~~~~ 332 (485)
++.|++.
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 7777776
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.5e-19 Score=177.52 Aligned_cols=419 Identities=10% Similarity=0.042 Sum_probs=257.7
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
++....-.+.+....|+.++|++++..+....+ .+...+..+...+.+.|++++|.++|++..+.. |.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 334444445555666666666666666654322 234445666666666666666666666665542 334555555556
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
++...|++++|...++++.+.. |+...+..+...+... |+.++|+..++++.+..+. +...+..+..++...+..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~--P~~~~~~~la~~l~~~-g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA--PDKANLLALAYVYKRA-GRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 6666666666666666665542 3222233333344444 6666666666666665322 4444445555555666666
Q ss_pred HHHHHHHHHHHCCCCCCh------hhHHHHHHHHH-----ccCCH---HHHHHHHHHHHhC-CCCCCHh-hHH----HHH
Q 011463 209 EAKELFKEMETKACSPTV------VTYTSLINGLC-----QSKSV---EEAMRLFEEMRSK-GVEPNVF-TYS----SLM 268 (485)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~ 268 (485)
.|++.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 66666554432 1110 01111122211 12233 6677777777754 1122221 111 113
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC---CHHhHHHHHHHHHhc
Q 011463 269 DGLCKGGCSSQAMELLQMMISKRHR-PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP---DAGLYGKIISCFCDI 344 (485)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 344 (485)
.++...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++....... .......+..++.+.
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445678899999999998876532 221 22235668888899999999999877643111 123456666678889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCc-cccc--------chhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHH
Q 011463 345 GKYQEAANFLDEMVLGGITPNR-LTWS--------LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414 (485)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 414 (485)
|++++|.++++++.+.. |.. ..+. ....+.......+... +.++|++.++++....+. +...+..++
T Consensus 324 g~~~eA~~~l~~~~~~~--P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA 400 (765)
T PRK10049 324 ENYPGALTVTAHTINNS--PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYA 400 (765)
T ss_pred ccHHHHHHHHHHHhhcC--CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 99999999999887642 211 1110 0011222455555666 999999999999988766 688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchhccc
Q 011463 415 TCFCKKGDIHKSARIVDELVLDGCLPD-EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482 (485)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 482 (485)
..+...|++++|++.++++.+. .|+ ...+...+..+.+.|++++|...++++++..+..+.+.-++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999986 465 45566677788899999999999999999988877775443
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=1.6e-18 Score=167.12 Aligned_cols=447 Identities=12% Similarity=0.035 Sum_probs=327.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN-STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
.-+-...++|+++.|+..|++++ ...|.++ ..+ .++..+...|+.++|+..+++..... +.+......+...+
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL----~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEES----KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH----hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 34566788999999999999999 2333332 344 78888889999999999999998322 12344444456789
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
...|++++|+++|+++.+.. |.++..+..++..+...++.++|++.++++.... |+...+..++..+... ++..+|
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~-~~~~~A 188 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRAT-DRNYDA 188 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhc-chHHHH
Confidence 99999999999999999875 4567778888899999999999999999998854 7766664444443333 666669
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhh------HHHHHHHH-----HccCC---
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT------YTSLINGL-----CQSKS--- 241 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~ll~~~-----~~~~~--- 241 (485)
++.++++.+..+. +...+..+..++.+.|-...|.++.++-... ..+.... ...+++.- ....+
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999998533 7788888999999999999998877764322 1111100 11111110 01123
Q ss_pred HHHHHHHHHHHHhC-CCCCC-HhhH----HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011463 242 VEEAMRLFEEMRSK-GVEPN-VFTY----SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315 (485)
Q Consensus 242 ~~~a~~~~~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 315 (485)
.+.|+.-++.+... +..|. ...| .-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 34455555555542 11232 2222 233457788999999999999999887665666888999999999999999
Q ss_pred HHHHHHHhHCC-----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-ccccc--------chhhhHHHHHH
Q 011463 316 VEILDRMKLQG-----LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWS--------LHIRIHNTVVQ 381 (485)
Q Consensus 316 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~l~~ 381 (485)
..++..+.... .+++......|.-++...+++++|..+++++.+. .|- ...+. --.......+.
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999986643 1233444678899999999999999999999873 221 00000 11233445555
Q ss_pred HHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCcHH
Q 011463 382 GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD-EGTWSAVMTALWDRRKMR 459 (485)
Q Consensus 382 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 459 (485)
.+... +..+|++.++++....|. |......+.+.+...|.+.+|.+.++.+... .|+ ..+....+.++...|+++
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHH
Confidence 56666 999999999999988777 8999999999999999999999999877765 454 455666788888999999
Q ss_pred HHHHHHHHHHHcCCCccchhc
Q 011463 460 QAAELLLLELMNKCVEAEVDI 480 (485)
Q Consensus 460 ~A~~~~~~~~~~~~~~~~~~~ 480 (485)
+|.....++++..++.+++.-
T Consensus 502 ~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 502 QMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHHHHHHHhhCCCchhHHH
Confidence 999999999998888777654
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.3e-18 Score=171.23 Aligned_cols=181 Identities=12% Similarity=0.057 Sum_probs=114.2
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChh
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (485)
...|++++|+..|+.++ ...|.++.++..++..|...|++++|+..+++..+.++. |...+..+.. .++++
T Consensus 55 ~~~Gd~~~A~~~l~~Al----~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~La~----i~~~~ 125 (987)
T PRK09782 55 QKNNDEATAIREFEYIH----QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSLAA----IPVEV 125 (987)
T ss_pred HhCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHHH----hccCh
Confidence 34489999999999988 344566888888889999999999999999998887653 4444443322 27777
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHH----------------------------------------HHHHHHcCCHHHHHHH
Q 011463 103 DAMRVFDKMKEFGCEPTPKSYITV----------------------------------------LAILVEENQLKLAFRF 142 (485)
Q Consensus 103 ~a~~~~~~~~~~~~~~~~~~~~~l----------------------------------------~~~~~~~~~~~~a~~~ 142 (485)
+|..+++++.+.. |-+..++..+ ...|...|++++|+++
T Consensus 126 kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 126 KSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred hHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 7778887776653 2223333222 4445555566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
+.++.+.+. .+......+-..+....++ +.+..+++. .+..+...+..+...|.+.|+.++|.++++++..
T Consensus 205 L~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 205 YNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 666665541 2222233333333331133 444444332 1223666777888889999999999999998753
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=4.6e-19 Score=174.19 Aligned_cols=409 Identities=9% Similarity=0.046 Sum_probs=303.9
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+++....|+.++|+++|+.+. ...+.+...+..+...+...|++++|.+++++++...+. +...+..++..+...
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~----~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~ 96 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYR----VHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHH----hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 466788999999999999998 223556667999999999999999999999999988665 677888899999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCChHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA-SLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~a~~ 177 (485)
|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++.+.. |+.. .+..+...+... +..+.|++
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~-~~~e~Al~ 171 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNN-RLSAPALG 171 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHC-CChHHHHH
Confidence 99999999999998874 45666 8888999999999999999999999965 5543 344455555555 89999999
Q ss_pred HHHhhhhCCCCCCH------HhHHHHHHHHH-----HcCCH---hHHHHHHHHHHHC-CCCCChh-hHH----HHHHHHH
Q 011463 178 IFREMPNRGCTPDS------YTYGTLINGLC-----RLGKI---YEAKELFKEMETK-ACSPTVV-TYT----SLINGLC 237 (485)
Q Consensus 178 ~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~ll~~~~ 237 (485)
.++.+... |+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++.
T Consensus 172 ~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 99877652 221 11222233222 22234 6788888888754 1222221 111 1134456
Q ss_pred ccCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHH
Q 011463 238 QSKSVEEAMRLFEEMRSKGVE-PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP---NIVTYSTLLNGLCKEGKLQ 313 (485)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 313 (485)
..|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+....... .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999987532 322 22335778999999999999999988753221 1234566677889999999
Q ss_pred HHHHHHHHHhHCCC-----------CCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHH
Q 011463 314 EAVEILDRMKLQGL-----------KPD---AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379 (485)
Q Consensus 314 ~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (485)
+|..+++.+..... .|+ ...+..+...+...|+.++|+++++++... .|+... ++..+
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~------l~~~l 399 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQG------LRIDY 399 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH------HHHHH
Confidence 99999999887531 122 234566778889999999999999999874 355432 23366
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 380 VQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452 (485)
Q Consensus 380 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 452 (485)
...+... ++++|++.++++....+. +...+...+..+...|++++|.++++++++. .|+......+-..+
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 6666666 999999999999998765 5667777888899999999999999999986 67766555544443
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.6e-18 Score=156.75 Aligned_cols=453 Identities=13% Similarity=0.066 Sum_probs=311.6
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
..+.....|...+.-.|+++.+..+.+.+.... ..-+.-...|..++++|...|+++.|...|.+.......-....+.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 356666777888888888888888888887321 0111124467888888888899999988888888775442244556
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN----QLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 165 (485)
-+.+.|.+.|+.+.+...|+.+.+.. |.+..+...+...|+..+ ..+.|..++.+..+.- +.|...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 67788888888888888888888763 455667777777777664 4567777777766643 34455555555444
Q ss_pred HhcCCChHHHHHHHHhhh----hCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCCh------hhHHHH
Q 011463 166 CKNSGTMDAAFKIFREMP----NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK---ACSPTV------VTYTSL 232 (485)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l 232 (485)
- . ++...++.+|..+. ..+..+.+...|.+...+...|+++.|...|...... ...++. .+--.+
T Consensus 425 e-~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 425 E-Q-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred H-h-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 3 3 56666676665544 3444567788888888888889999988888887654 112222 233345
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011463 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312 (485)
Q Consensus 233 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (485)
....-..++.+.|...+..+.+.. +.=+..|-.++......+...+|...+..+....- .++..++.+...+.+...+
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhh
Confidence 566666778888888888888762 22233344444333345778888888888877633 3666777777788888888
Q ss_pred HHHHHHHHHHhHCC-CCCCHHhHHHHHHHHH------------hcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHH
Q 011463 313 QEAVEILDRMKLQG-LKPDAGLYGKIISCFC------------DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379 (485)
Q Consensus 313 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (485)
..|.+-|......- ..+|..+...|...|. ..+..++|+++|.++++.. +.|... .|.+
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yA-------ANGI 652 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYA-------ANGI 652 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhh-------ccch
Confidence 88877666655431 2346666666665444 2345678888888887743 112111 2244
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCc
Q 011463 380 VQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD-GCLPDEGTWSAVMTALWDRRK 457 (485)
Q Consensus 380 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 457 (485)
.-.++.. ++..|..+|.++.+...+ ...+|-.+..+|..+|++..|++.|+...+. .-..+......|..++.+.|.
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 4455555 899999999999876443 5567888999999999999999999988876 323456677788899999999
Q ss_pred HHHHHHHHHHHHHcCCCccch
Q 011463 458 MRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 458 ~~~A~~~~~~~~~~~~~~~~~ 478 (485)
+.+|.+.+.+++...+.++.|
T Consensus 732 ~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHHHHhCCccchH
Confidence 999999999999887777766
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.5e-17 Score=160.72 Aligned_cols=405 Identities=10% Similarity=-0.061 Sum_probs=295.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.+...+..+.+.|++++|+..|++++... |+...|..+..+|.+.|++++|++.++...+.+ +.+...|..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 35567888999999999999999999875 467789999999999999999999999999875 446788999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC--------------------------
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-------------------------- 185 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-------------------------- 185 (485)
..|++++|...|..+....- .+......++...... .....+...++.-...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKK-FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 99999999998877665431 1111111222111111 1111111111110000
Q ss_pred -CCCCC-HHhHHHHHHHH---HHcCCHhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 011463 186 -GCTPD-SYTYGTLINGL---CRLGKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258 (485)
Q Consensus 186 -~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (485)
...+. ...+..+...+ ...+++++|.+.|++..+.+ .+.....+..+...+...|++++|+..+++..+.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 00000 00111111111 22368999999999998764 22345678888888999999999999999999873 3
Q ss_pred CCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHH
Q 011463 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338 (485)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (485)
.....|..+...+...|++++|...++.+++... .+..++..+...+...|++++|...|++..+.. +.+...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHH
Confidence 3466788888899999999999999999988743 367889999999999999999999999999875 45677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhh------HH
Q 011463 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT------YS 411 (485)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~------~~ 411 (485)
.++.+.|++++|+..+++..+. .|+.. .+++.+...+... ++++|...|++.....+..+... ++
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~--~P~~~------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN--FPEAP------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 9999999999999999999874 35432 2233666777777 99999999999988754322211 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 473 (485)
..+..+...|++++|.+++++..+.. +.+...+..++..+.+.|++++|+++++++++...
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 22233445799999999999998763 33445688899999999999999999999988643
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.3e-18 Score=156.90 Aligned_cols=442 Identities=12% Similarity=0.101 Sum_probs=304.7
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhh
Q 011463 26 KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD--ITEDIFLSICRGYGRVHRPLD 103 (485)
Q Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 103 (485)
..+..++.++..+- ...+.||.+.+.|...+.-.|+++.+..+...+...... .-.+.|..+.++|...|++++
T Consensus 250 ~s~~~~~~ll~~ay----~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAY----KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred HHHHHHHHHHHHHH----hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 34555666666555 233567777788888888888888888888877765421 123457778888888888888
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----ChHHHHHHH
Q 011463 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG----TMDAAFKIF 179 (485)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~~a~~~~ 179 (485)
|...|.+.....-.-....+.-+.+.+.+.|+.+.+...|+...+.. |+..-...++..+....+ ..+.|..++
T Consensus 326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 88888877765311113445667788888888888888888888754 666555555554443312 456777777
Q ss_pred HhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHH----HCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME----TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
....+.- +.|...|-.+...+....-+ .++..|.... ..+..+.....|.+.......|+++.|...|......
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 7766653 33777777777766554443 3366665543 3444567778888888888888988888888887654
Q ss_pred ---CCCCCH------hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC
Q 011463 256 ---GVEPNV------FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 256 ---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (485)
...++. .+--.+...+-..++.+.|.+.|..+++..+. =...|--++......++..+|...++.....+
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 112222 22334556666778888888888888876321 12233333323334567788888888877654
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC---------ChhHHHHHHHH
Q 011463 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT---------DPNRAFQVYLS 397 (485)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~a~~~~~~ 397 (485)
..++..+..+...+.....+..|.+-|....+.-... ..+| .++.+.|..+..+... ..++|+++|.+
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~-~D~Y-sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK-TDAY-SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC-Cchh-HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 4567777777878888888888888777776542222 1222 2445555555554432 34778899999
Q ss_pred HHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
+++..+. |...-|.+.-+++..|++.+|..+|.+..+.. .....+|..+..+|...|++..|++.|+.++++-....+
T Consensus 638 vL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 638 VLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 9988777 88888999999999999999999999999873 345678889999999999999999999999999887777
Q ss_pred hhcc
Q 011463 478 VDIQ 481 (485)
Q Consensus 478 ~~~~ 481 (485)
+++.
T Consensus 716 ~~vl 719 (1018)
T KOG2002|consen 716 SEVL 719 (1018)
T ss_pred HHHH
Confidence 6653
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=3.4e-16 Score=154.38 Aligned_cols=434 Identities=12% Similarity=0.037 Sum_probs=301.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHh-cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS-ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
+.+++.+.|+|++|++++..+. +.+ +.+......+..+|.. .++ +.+..+++... ..++..+..++..|.
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~---k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d~~l~~ala~~yi 258 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEAR---QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTDPQSRITYATALA 258 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHH---hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccCHHHHHHHHHHHH
Confidence 3788999999999999999999 333 5556667777778877 466 77777755322 247888999999999
Q ss_pred ccCChhhHHHHHHHHHhcCCC-CCHhhHH------------------------------HHHHHHHHcCCHHHHHHHHH-
Q 011463 97 RVHRPLDAMRVFDKMKEFGCE-PTPKSYI------------------------------TVLAILVEENQLKLAFRFYR- 144 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~------------------------------~l~~~~~~~~~~~~a~~~~~- 144 (485)
+.|+.++|.++++++...... |...+|. .++..+.+.++++.+.++..
T Consensus 259 ~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (987)
T PRK09782 259 YRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLAT 338 (987)
T ss_pred HCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 999999999999987653211 2222221 11344455555555444422
Q ss_pred ----------------------------HHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC--CCCCCHHhH
Q 011463 145 ----------------------------HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR--GCTPDSYTY 194 (485)
Q Consensus 145 ----------------------------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 194 (485)
.|.+.. +-+......+--...+. |+.++|.++++..... +..++....
T Consensus 339 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 339 LPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQN-GQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred CCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-ccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 111100 01222222222233455 9999999999998773 122344444
Q ss_pred HHHHHHHHHc-------------------------CCHhHHHHHHHHHHHC-C-CCC--ChhhHHHHHHHHHccCCHHHH
Q 011463 195 GTLINGLCRL-------------------------GKIYEAKELFKEMETK-A-CSP--TVVTYTSLINGLCQSKSVEEA 245 (485)
Q Consensus 195 ~~l~~~~~~~-------------------------~~~~~a~~~~~~~~~~-~-~~~--~~~~~~~ll~~~~~~~~~~~a 245 (485)
.-++..|.+. |+..++...+...... + .++ +...|..+..++.. ++.++|
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 4555555443 3344444444444332 1 133 56677878877776 888899
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..++.+.|++++|...+++..+.
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9988888766 355544444455567899999999999998665 334445666777888999999999999999886
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCc
Q 011463 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404 (485)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~ 404 (485)
. +.....+..+.......|++++|...+++..+.. |+...+. .+...+.+. ++++|...+++.....+.
T Consensus 572 ~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~-------~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 572 G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYV-------ARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHH-------HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4 3344444444445556799999999999998754 5543333 666777777 999999999999998776
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchh
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVD 479 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (485)
+...++.+..++...|++++|++.+++..+.. +-+...+..+..++...|++++|+..++++++.......+.
T Consensus 642 -~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 642 -NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 77888999999999999999999999999862 34566788899999999999999999999999876555543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=6.4e-16 Score=149.30 Aligned_cols=413 Identities=11% Similarity=0.141 Sum_probs=300.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
-++.++...|+.++|+..++++. ...+.+......++..+...|++++|+++|+++.+..+. ++..+..++..+.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~ 147 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQA 147 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHh
Confidence 56777888899999999999998 122333444555577899999999999999999999877 6788888899999
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
..++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..+...+.+. |-...|.
T Consensus 148 ~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~-~~~~~a~ 223 (822)
T PRK14574 148 DAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRN-RIVEPAL 223 (822)
T ss_pred hcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCcHHHH
Confidence 999999999999999886 4666666555555555677767999999999975 23456667777777777 8888888
Q ss_pred HHHHhhhhCCCCCCHHhH------HHHHHHH-----HHcCCH---hHHHHHHHHHHHC-CCCCCh-hhH----HHHHHHH
Q 011463 177 KIFREMPNRGCTPDSYTY------GTLINGL-----CRLGKI---YEAKELFKEMETK-ACSPTV-VTY----TSLINGL 236 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~-~~~----~~ll~~~ 236 (485)
++..+-... +.+....+ ..+++.- ....++ +.|+.-++.+... +..|.. ..| .-.+-++
T Consensus 224 ~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 224 RLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 877765432 11111111 1111100 011223 3445555555442 111222 222 2345678
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC
Q 011463 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-----RPNIVTYSTLLNGLCKEGK 311 (485)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ 311 (485)
...+++.++++.++.+...+.+....+-..+..+|...+++++|..+++.+..... .++......|.-++...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 88999999999999999888766677888999999999999999999999977532 2233335778899999999
Q ss_pred HHHHHHHHHHHhHCCC-----------CCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH
Q 011463 312 LQEAVEILDRMKLQGL-----------KPDA---GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377 (485)
Q Consensus 312 ~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
+++|..+++.+.+... .|+. ..+..++..+...|+..+|.+.++++... .|....+. .
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~------~ 454 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLR------I 454 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH------H
Confidence 9999999999987421 1221 23445677788999999999999999874 45544332 2
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
.....+... .+.+|.+.++......+. +..+....+.++...|++++|.++.+.+.+. .|+......+-.
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~r 525 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELDR 525 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence 555555566 999999999888877655 6777788888999999999999999999886 676665554443
No 27
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=9.9e-16 Score=131.03 Aligned_cols=426 Identities=13% Similarity=0.113 Sum_probs=323.9
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChh
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (485)
..++++++|+.+|+.++ ..-..+...|...+..-.+......|..+++++...-|..+ ..|...+..--..|+..
T Consensus 84 esq~e~~RARSv~ERAL----dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERAL----DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HhHHHHHHHHHHHHHHH----hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccH
Confidence 45788899999999999 34456777888889999999999999999999998865533 35666676777889999
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 011463 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182 (485)
Q Consensus 103 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 182 (485)
.|.++|++..+. .|+..+|++.+..-.+-+.++.|..+|++..- +.|+..+|-.....=-++ |....+..+|+..
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~-g~~~~aR~VyerA 233 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKH-GNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhc-CcHHHHHHHHHHH
Confidence 999999999985 69999999999999999999999999999987 459999998888877777 9999999999998
Q ss_pred hhC-CC-CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCHHHHHHH--------HH
Q 011463 183 PNR-GC-TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT--VVTYTSLINGLCQSKSVEEAMRL--------FE 250 (485)
Q Consensus 183 ~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--------~~ 250 (485)
.+. |- ..+...+.+....-.++..++.|.-+|+-.+.. ++.+ ...|.....---+-|+....... ++
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 875 21 113344555555556778889999999888775 2222 23344433333344554333322 33
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-hh-hHHHH----HH-H---HHhcCCHHHHHHHHH
Q 011463 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN-IV-TYSTL----LN-G---LCKEGKLQEAVEILD 320 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l----~~-~---~~~~~~~~~a~~~~~ 320 (485)
.+.+.+ +-|-.+|--.+..-...|+.+...++|++++.. ++|- .. .|... ++ + =....+.+.+.++++
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444443 557778888888888899999999999999887 4442 11 11111 11 1 135689999999999
Q ss_pred HHhHCCCCCCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHH
Q 011463 321 RMKLQGLKPDAGLYGKIISCFC----DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395 (485)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~ 395 (485)
..++. +|-...||..+--.|+ ++.+...|.+++.... |.-|....|. ..+..-... +++.+..+|
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk-------~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFK-------GYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHH-------HHHHHHHHHhhHHHHHHHH
Confidence 98884 4556666666554444 6788999999998876 4567777776 666665566 899999999
Q ss_pred HHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
++.++.++. +..+|......-...|+++.|..+|+-+++.. .......|.+.+..=...|.++.|..++++.++..
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 999999877 88899998888889999999999999999862 22234567777777778999999999999999864
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=8.1e-16 Score=129.95 Aligned_cols=409 Identities=15% Similarity=0.188 Sum_probs=292.1
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh--ccCChhhH-HHHHHHHHhc-------------
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG--RVHRPLDA-MRVFDKMKEF------------- 114 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~------------- 114 (485)
++-+.++. .+.+|.+.++--+|+.|...+.+.+...-..|++.-+ ...++--+ .+.|-.|...
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 34444444 3567888888888888888887777766555554322 22221111 1112111111
Q ss_pred ------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCC
Q 011463 115 ------GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188 (485)
Q Consensus 115 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 188 (485)
-.|.+..++..+|.++++-...+.|.++|++......+.+..++|.++.+-.- ....+++.+|......
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh-----hccHHHHHHHHHhhcC
Confidence 13557889999999999999999999999999988888999999999987443 3347899999999999
Q ss_pred CCHHhHHHHHHHHHHcCCHhHH----HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH-HHHHHHHHHhC----CC--
Q 011463 189 PDSYTYGTLINGLCRLGKIYEA----KELFKEMETKACSPTVVTYTSLINGLCQSKSVEE-AMRLFEEMRSK----GV-- 257 (485)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~-- 257 (485)
||..|+|+++++..+.|+++.| .+++.+|.+.|+.|...+|..++..+.+.++..+ +..++.++... .+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999988764 6778889999999999999999999998888744 55555555432 12
Q ss_pred --CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC
Q 011463 258 --EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR----HRPN---IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328 (485)
Q Consensus 258 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (485)
+-|...|...+..|.+..+.+-|..+...+.... +.|+ ..-|..+....++....+.....++.|+-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2255667888899999999999998887776531 2222 234566777788888999999999999887777
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC---------------------C
Q 011463 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT---------------------D 387 (485)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------------~ 387 (485)
|+..+...++++..-.|.++-..++|.++...|...+..... -++..+++. +
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e-------eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE-------EILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH-------HHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999888766433222111 222222221 1
Q ss_pred hhHHHH-HHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCcHHHHH
Q 011463 388 PNRAFQ-VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC----LPDEGTWSAVMTALWDRRKMRQAA 462 (485)
Q Consensus 388 ~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~ 462 (485)
..++.+ .-.++.+ .+.+....+.++-.+.+.|..++|.+++..+.+.+- .|.......++..-.+.+.+..|+
T Consensus 504 ~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 111111 1122232 234566778888889999999999999999966532 234444446677777889999999
Q ss_pred HHHHHHHHcCCC
Q 011463 463 ELLLLELMNKCV 474 (485)
Q Consensus 463 ~~~~~~~~~~~~ 474 (485)
.+++-|...+..
T Consensus 582 ~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 582 EVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHcCch
Confidence 999999877643
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=3e-14 Score=131.60 Aligned_cols=331 Identities=11% Similarity=0.094 Sum_probs=260.2
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
++.+...|++++|.+++..++ ...|.++..|..|..+|-..|+.+.+...+-.+...+++ |...|..+.....+.
T Consensus 146 AN~lfarg~~eeA~~i~~EvI----kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVI----KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHH----HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhc
Confidence 455666799999999999999 455778889999999999999999999998888887776 779999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCChHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV----ASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~ 174 (485)
|++..|.-.|.+.++.. |++...+-.-...|-+.|+...|.+-|.++.....+.+. .....++..+... ++-+.
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~-~~~e~ 298 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH-NERER 298 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 99999999999999975 566667777788899999999999999999986522222 2233345555555 66789
Q ss_pred HHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC---------------------------Ch
Q 011463 175 AFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP---------------------------TV 226 (485)
Q Consensus 175 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~ 226 (485)
|.+.++..... +-..+...++.++..+.+...++.+......+......+ +.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99998887763 233466778899999999999999998888876622111 22
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKG--VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304 (485)
Q Consensus 227 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (485)
.. ..+.-+....+..+....+...+.+.+ +.-+...|.-+..++...|.+.+|+.+|..+......-+...|-.+..
T Consensus 379 ~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 22 122233444444444444455555554 344567788899999999999999999999998866667889999999
Q ss_pred HHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
+|...|.++.|...++...... +.+......|...+-+.|+.++|.+.+..+.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999998864 4566777788888999999999999999875
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3.8e-14 Score=120.02 Aligned_cols=430 Identities=13% Similarity=0.153 Sum_probs=295.1
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHH--hcCCcchH-HHHHHHHhhcC----------
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV--SANQFRPA-EDLLDRVNKEK---------- 80 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a-~~~~~~~~~~~---------- 80 (485)
+...+++ +..+|.+.++--+|+.|. +++++.++..-..+++.-+ ...++.-| ++.|-.|...+
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~---~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMR---SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHH---hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 4444444 455899999999999999 6788888776655554322 22222211 11111111111
Q ss_pred ---------CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011463 81 ---------CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151 (485)
Q Consensus 81 ---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (485)
.+.+..++..+|.+.++--..+.|.+++++..+...+.+..+||.+|.+-.-... .+++.+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 1226778999999999999999999999999887778899999999977654333 789999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCChHH----HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhH-HHHHHHHHHHC----CC
Q 011463 152 QPCVASLNVLIKALCKNSGTMDA----AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE-AKELFKEMETK----AC 222 (485)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~ 222 (485)
.||..|+|.++.+..+. |+++. |.+++.+|.+.|+.|+..+|..++..+.+.++..+ +..++.++... ..
T Consensus 270 ~Pnl~TfNalL~c~akf-g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKF-GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CCchHhHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 99999999999999988 98765 56788889999999999999999999998888744 55566665432 12
Q ss_pred ----CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 011463 223 ----SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG----VEPN---VFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291 (485)
Q Consensus 223 ----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (485)
+.+...|...+..|....+.+-|.++..-+.... +.|+ ..-|..+..+.++....+.-...|+.+.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2244567778888889999999988877665431 2333 2345667778888888999999999998887
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcC-CH--------H-----HHHHHHHHH
Q 011463 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG-KY--------Q-----EAANFLDEM 357 (485)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~-----~a~~~~~~~ 357 (485)
.-|+..+...++++....|.++-.-++|.+++..|...+......++..+++.+ .. . -|..+++..
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999998876656666666666666544 11 0 111111111
Q ss_pred HHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCC-CccchhhHH---HHHHHHHhcCCHHHHHHHHHH
Q 011463 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS-ISVDSLTYS---SLITCFCKKGDIHKSARIVDE 432 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~ 432 (485)
...-..-....|. ..-.+.++-.+.+. ..++|.+++..+.+.+ --|-....| .+++.-...++...|..+++-
T Consensus 509 e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 509 ESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred HhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1100000011111 11112444445556 8999999999986433 233334444 566777788999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHh
Q 011463 433 LVLDGCLPDEGTWSAVMTALWD 454 (485)
Q Consensus 433 ~~~~~~~p~~~~~~~l~~~~~~ 454 (485)
|...+.+.-...-+.+...|.-
T Consensus 587 a~~~n~~~~E~La~RI~e~f~i 608 (625)
T KOG4422|consen 587 ASAFNLPICEGLAQRIMEDFAI 608 (625)
T ss_pred HHHcCchhhhHHHHHHHHhcCc
Confidence 9876533322233334444433
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=7.9e-16 Score=131.08 Aligned_cols=420 Identities=14% Similarity=0.076 Sum_probs=277.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhH-HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHH----HHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTF-SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI----FLSI 91 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l 91 (485)
.+++.|....-..+|+..|+-++ +...-|+...+ ..+...+.+.+.+..|++.++..+..-|..+-.+ .+.+
T Consensus 206 nlaqqy~~ndm~~ealntyeiiv---knkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIV---KNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhh---cccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 34566677778888999998888 45555665433 3455778888899999999988887755444433 4444
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------CCCHHHHH
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI------------QPCVASLN 159 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~ 159 (485)
...+.+.|.++.|+..|+...+. .|+-.+-..++-++...|+.++..+.|.+|+.... .|+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 45677889999999999988775 47776666666677778888888999988876422 13333333
Q ss_pred HHHH-----HHHhcCCChHHHHHHHHhhhh---CCCCCCHH-----h--------H--------HHHHHHHHHcCCHhHH
Q 011463 160 VLIK-----ALCKNSGTMDAAFKIFREMPN---RGCTPDSY-----T--------Y--------GTLINGLCRLGKIYEA 210 (485)
Q Consensus 160 ~ll~-----~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~-----~--------~--------~~l~~~~~~~~~~~~a 210 (485)
..+. ..-+. +-..|.+..-...+ --+.|+-. + + -.-..-+.+.|+++.|
T Consensus 361 eai~nd~lk~~ek~--~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKE--NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHhhHHHHHHHHh--hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 2221 11111 11122222211111 01111100 0 0 1113457788888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHH------------------------------------HHHHHccCCHHHHHHHHHHHHh
Q 011463 211 KELFKEMETKACSPTVVTYTSL------------------------------------INGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l------------------------------------l~~~~~~~~~~~a~~~~~~~~~ 254 (485)
+++++-+.+..-+.....-+.| .......|++++|...+++...
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 8888776554221111111111 0112235788888888888876
Q ss_pred CCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhH
Q 011463 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334 (485)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (485)
.+-......|| +.-.+...|+.++|++.|-.+... ...+..+...+...|....+...|++++.+.... ++.|+.++
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 53222222333 233466789999999988876554 2337777888888898899999999999887654 57789999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHH
Q 011463 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413 (485)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 413 (485)
..+...|-+.|+-.+|.+.+-+--+. .+.+.. ...++...|... -.++++.+|++..-. .|+..-|..+
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie-------~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlm 665 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIE-------TIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLM 665 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchH-------HHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHH
Confidence 99999999999999998876543321 122333 333777777777 788999999987653 6799999988
Q ss_pred HHHH-HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCc
Q 011463 414 ITCF-CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457 (485)
Q Consensus 414 ~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 457 (485)
+..| .+.|++.+|..+++...+. ++-|...+..+++.+...|-
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 8766 4689999999999999876 67788888888888877773
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.2e-15 Score=127.20 Aligned_cols=405 Identities=12% Similarity=0.037 Sum_probs=275.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC-HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHD-NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
...+-+.++|.+++|++.|.+++ ...|+ +.-|....-+|...|+|+...+..-..++.+|. -+..+..-..++
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI-----~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAI-----ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHH-----hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 34567889999999999999999 44666 888999999999999999999999999988655 456777777888
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhc-----
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG--IQPCVASLNVLIKALCKN----- 168 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~----- 168 (485)
-..|++.+|+.=..-..-.+--.+..+--.+=+.+-+.+ ...+.+-+. +.+ +-|+.....+....+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhc---ccCCCCCCcHHHHHHHHhhccccccccc
Confidence 888998888754433322111112221111111111111 112222221 111 224444333333332210
Q ss_pred ----------------------CCChHHHHHHHHhhhhC---CCCCC---------HHhHHHHHHHHHHcCCHhHHHHHH
Q 011463 169 ----------------------SGTMDAAFKIFREMPNR---GCTPD---------SYTYGTLINGLCRLGKIYEAKELF 214 (485)
Q Consensus 169 ----------------------~~~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~ 214 (485)
...+..|...+.+-... ....+ ..+.......+.-.|+...|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 01222222222221110 01111 112222223345678899999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 011463 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294 (485)
Q Consensus 215 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (485)
+..++....+ ...|..+..+|....+.++....|....+.+ +-++.+|..-.+.+.-.+++++|..-|++.++..+.
T Consensus 350 ~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe- 426 (606)
T KOG0547|consen 350 DAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE- 426 (606)
T ss_pred HHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-
Confidence 9998874432 3337788889999999999999999999886 447778888888888889999999999999987443
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhh
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
+...|-.+.-+..+.+++++++..|++.++. +|.-+.+|+.....+...++++.|.+.|+...+....-+....+...-
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 5666766666777889999999999999887 466788999999999999999999999999987532222222222233
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 375 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
++-+++..-.+.++..|..++++..+..++ ....|..|...-.+.|+.++|+++|++....
T Consensus 506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 506 VHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333444333344999999999999998777 6788999999999999999999999987754
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=2.1e-13 Score=121.67 Aligned_cols=260 Identities=12% Similarity=0.124 Sum_probs=121.7
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHH----hhcCCCCCHHHHHHHHHHH
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV----NKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~ 95 (485)
.++.+..-++.|..+++.+. +.+|.++..|..-...--..|+.+....++.+. ...|+..+...|..=...|
T Consensus 414 lAlarLetYenAkkvLNkaR----e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAR----EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 34455555666666666655 455556666655555555556555555554432 2334444555555555555
Q ss_pred hccCChhhHHHHHHHHHhcCCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEP--TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
-..|..-.+..+....+..|+.- -..+|..-...|.+.+.++-|..+|...++. .|.....-.-...+-+..|..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHH
Confidence 55555555555555544444322 1334555555555555555555555555442 2332222222222333335555
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
+...+|+++...-. -....|......+-..|+...|..++....+... .+...|...+..-.....++.|..+|.+..
T Consensus 568 sl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 55555555544321 1333444444444444555555555554444321 134444444444445555555555554444
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (485)
.. .|+...|.--+...--.+..++|.++++..++
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 32 33333333333333334444444444444443
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.5e-13 Score=127.06 Aligned_cols=371 Identities=13% Similarity=0.144 Sum_probs=258.5
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.....+..+...|++++|.+++.++++..+. +...|..|...|-..|+.+++...+-.....+ |.|...|..+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3444455566779999999999999999876 78899999999999999999999887776654 557789999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHH----HHHHHHHHcCCH
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG----TLINGLCRLGKI 207 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 207 (485)
+.|++++|.-+|.+.++.. +++...+-.-...+-+. |+...|..-|.++.....+.|..-+. ..++.+...++-
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999865 23333333344444455 99999999999999885433433333 345567777888
Q ss_pred hHHHHHHHHHHHC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC---------------------------CC
Q 011463 208 YEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV---------------------------EP 259 (485)
Q Consensus 208 ~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~ 259 (485)
+.|.+.++..... +-..+...++.++..+.+...++.+......+..... .+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999888887663 2234566788888999999999999888877766221 22
Q ss_pred CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHH
Q 011463 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKR--HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337 (485)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (485)
+..++ -++-++.+....+....+........ +.-++..|.-+..++...|++.+|+.+|..+.....--+...|-.+
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 22221 22333444455555555555555554 3335667788888888888888888888888776444456688888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhC--------CCccchh
Q 011463 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR--------SISVDSL 408 (485)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~~ 408 (485)
.++|...|.+++|.+.++.++.. .|+...-. -.+...+... ++++|.+.++.+... +..|+..
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~R------i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLIL--APDNLDAR------ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--CCCchhhh------hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 88888888888888888888773 45543332 1333334444 777887777775422 2223333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
..-...+.+.+.|+.++-+.+-..|+.
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344445556677777776666666664
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=2.4e-14 Score=130.07 Aligned_cols=283 Identities=11% Similarity=0.054 Sum_probs=201.2
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHH--HHHHHHHccCCHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT--SLINGLCQSKSVEEAMR 247 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 247 (485)
|+++.|.+.+....+.... ....+.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 98 Gd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 7788777777665554211 1222333344446778888888888777664 33432222 23556777788888888
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI-------VTYSTLLNGLCKEGKLQEAVEILD 320 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 320 (485)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877764 335666777777888888888888888888776544222 122233333334455666667776
Q ss_pred HHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHH
Q 011463 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399 (485)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~ 399 (485)
.+.+. .+.++.....+...+...|+.++|.+.+++..+. .|+... ..+...... +++++.+..++..
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l---------~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL---------VLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH---------HHHHhhccCCChHHHHHHHHHHH
Confidence 66443 2557788888899999999999999999888873 343321 233344444 8888999999998
Q ss_pred hCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+..+. |+..+..+...|.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++.+..
T Consensus 322 k~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88776 7788899999999999999999999999986 799999999999999999999999999998774
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=2.8e-14 Score=130.45 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 011463 275 GCSSQAMELLQMMISKRHRPNI--VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352 (485)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 352 (485)
++.+.+.+.++...+..+. |+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555555444221 33 34445555555566666666665532222224555555555556666666666666
Q ss_pred HHHHH
Q 011463 353 FLDEM 357 (485)
Q Consensus 353 ~~~~~ 357 (485)
++++.
T Consensus 392 ~~~~~ 396 (409)
T TIGR00540 392 MRQDS 396 (409)
T ss_pred HHHHH
Confidence 65554
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=2.5e-12 Score=114.93 Aligned_cols=430 Identities=15% Similarity=0.086 Sum_probs=336.8
Q ss_pred HHHHccCCHHHHHHHHHHhhhhh-cCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHHh
Q 011463 20 QLIRAEKDVNKALVIFDSATAEY-ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGYG 96 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 96 (485)
.+=.++|+.+...++..+.+.+. ..|+.-+...|..-...|-..|..-.+..+...++..|+.- -..+|..-.+.|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 34456888888888887766443 45777889999999999999999999999999999887652 2357888889999
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
+.+-++-|..+|...++. ++.+...|......--..|..+....+++++...- +-....|.......... |+...|.
T Consensus 528 k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~a-gdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKA-GDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhc-CCcHHHH
Confidence 999999999999999886 35567788888887778899999999999998853 33444555566666666 9999999
Q ss_pred HHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011463 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 256 (485)
.++..+.+.... +...|..-+........++.|..+|.+.... .|+...|..-+..--..++.++|.+++++..+.
T Consensus 605 ~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 999999988655 8889999999999999999999999998774 567777777777767779999999999999886
Q ss_pred CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHH
Q 011463 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336 (485)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (485)
++.-...|-.+.+.+-+.++.+.|.+.|..-.+. .+.....|-.+...=-+.|++-+|..++++..-.+ +.+...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 2333456777778888899999999988877665 44456677777777778899999999999988876 668889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLIT 415 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 415 (485)
.++.-.+.|+.+.|..+..+.++.- +.+...|. -.+...... .-......++ +. .-|+.+.-.+..
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWa-------EaI~le~~~~rkTks~DALk---kc--e~dphVllaia~ 825 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQEC-PSSGLLWA-------EAIWLEPRPQRKTKSIDALK---KC--EHDPHVLLAIAK 825 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHH-------HHHHhccCcccchHHHHHHH---hc--cCCchhHHHHHH
Confidence 9999999999999999999888753 23333332 333333322 2222222222 22 226777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.+.....+++|.+.|.+.+..+ +....+|..+...+.+.|.-+.-.+++.++..-.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 8888999999999999999873 4456788888888899998888888888887654
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=3.2e-14 Score=130.05 Aligned_cols=290 Identities=10% Similarity=0.013 Sum_probs=201.9
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|+++.|.+.+....+.... ....+-....+....|+++.|.+.+.+..+....+...........+...|+++.|...+
T Consensus 98 g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877765322 233344556677788888888888888766432222223333467777888888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---HhcCCHHHHHHHHHHHhHC
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS-TLLNGL---CKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~~~ 325 (485)
+.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+.. +...+. .-..++ ...+..+.+...+..+...
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8888875 336667778888888888888888888888887554 332221 111111 2223333333344444443
Q ss_pred C---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHh--cC-ChhHHHHHHHHHH
Q 011463 326 G---LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC--KT-DPNRAFQVYLSMR 399 (485)
Q Consensus 326 ~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~a~~~~~~~~ 399 (485)
. .+.+...+..+...+...|+.++|.+++++..+.. |+..... + .++..+. .. +.+.+.+.+++..
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~-----~-~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAIS-----L-PLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccch-----h-HHHHHhhhcCCCChHHHHHHHHHHH
Confidence 2 12377888889999999999999999999998853 4443210 0 1222222 23 6788888888888
Q ss_pred hCCCccch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 400 NRSISVDS--LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 400 ~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+..+. |+ ....++.+.|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77555 56 6778999999999999999999995433334799998999999999999999999999997654
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1e-14 Score=124.41 Aligned_cols=384 Identities=17% Similarity=0.146 Sum_probs=264.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
+.+++.+.+++.+|++.|+-++.+- ..+..+ ....+.+...+.+.|+++.|+..|+.+.+.. |+..+-..|+-++
T Consensus 243 igni~~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICA 319 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhh
Confidence 4567788999999999999988331 111111 3356777778899999999999999998874 5665555566666
Q ss_pred hccCChhhHHHHHHHHHhcCCC------------CCHhhHHHHH-----HHHHHcCC--HHHHHHHHHHHHHcCCCCCHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCE------------PTPKSYITVL-----AILVEENQ--LKLAFRFYRHMREIGIQPCVA 156 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 156 (485)
...|+.++..+.|.+|...-.. |+....+..+ .-.-+.+. .++++-.--+++.--+.|+..
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 7789999999999998764211 2222222211 11111111 111111111111111112210
Q ss_pred ---------------------HHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHH-----------------
Q 011463 157 ---------------------SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI----------------- 198 (485)
Q Consensus 157 ---------------------~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------------- 198 (485)
.-..-...+.++ |+++.|.++++-+.+.+-......-+.|-
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~-~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKN-GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc-cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHH
Confidence 001112345666 88888888887776653221111111111
Q ss_pred -------------------HHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHH---HHHHHccCCHHHHHHHHHHHHhCC
Q 011463 199 -------------------NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL---INGLCQSKSVEEAMRLFEEMRSKG 256 (485)
Q Consensus 199 -------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~ 256 (485)
......|++++|.+.|++.... |..+..+| .-.+-..|+.++|+..|-++...
T Consensus 479 ad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i- 553 (840)
T KOG2003|consen 479 ADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI- 553 (840)
T ss_pred HHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-
Confidence 1112357889999999998765 33333333 33466789999999999887654
Q ss_pred CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHH
Q 011463 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336 (485)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (485)
+..+..++..+...|....+...|++++.+.... ++.|+.+.+.|...|-+.|+-..|...+-+-.+. ++-+..+...
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iew 631 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEW 631 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHH
Confidence 2347778888899999999999999999998776 6668999999999999999999998877655443 4678889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC--ChhHHHHHHHHHHhCCCccchhhHHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT--DPNRAFQVYLSMRNRSISVDSLTYSSLI 414 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 414 (485)
+..-|....-+++++.+|++..- +.|+...|. .++..|.+. ++.+|+++|+.....-+. |...+..|+
T Consensus 632 l~ayyidtqf~ekai~y~ekaal--iqp~~~kwq-------lmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflv 701 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ-------LMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLV 701 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH-------HHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHH
Confidence 99999999999999999998765 679999998 777777766 999999999999877555 888888899
Q ss_pred HHHHhcCC
Q 011463 415 TCFCKKGD 422 (485)
Q Consensus 415 ~~~~~~g~ 422 (485)
+.+...|.
T Consensus 702 ri~~dlgl 709 (840)
T KOG2003|consen 702 RIAGDLGL 709 (840)
T ss_pred HHhccccc
Confidence 98887774
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=9.1e-14 Score=126.32 Aligned_cols=283 Identities=16% Similarity=0.151 Sum_probs=142.1
Q ss_pred cCCcchHHHHHHHHhhcCCCCCHHH-HHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHH--HHHHHHHHcCCHHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCDITEDI-FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI--TVLAILVEENQLKLA 139 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 139 (485)
.|+++.|.+.+....+... ++.. +........+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 4555555555554433311 1111 222223334555555555555555443 23332221 223445555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCH-------HhHHHHHHHHHHcCCHhHHHH
Q 011463 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS-------YTYGTLINGLCRLGKIYEAKE 212 (485)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 212 (485)
...++++.+.. +-+......+...+.+. |++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555555543 12233344444444444 5555555555555554322111 122233333333344444445
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 011463 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292 (485)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (485)
+++.+... .+.+......+..++...|+.++|..++++..+. +++.... ++.+....++.+++.+..+...+..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 55544332 2234555556666666666666666666666553 3333211 22223344666666666666665533
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
. |+..+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 5555666666666666666666666666654 46666666666666666666666666666543
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=1e-16 Score=139.30 Aligned_cols=258 Identities=17% Similarity=0.171 Sum_probs=58.8
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCC-CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANG-FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
+..+.+.|++++|++++.... ... .+.|+..|..+.......++++.|.+.++++...+.. ++..+..++.. ..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~---~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAA---QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 444445555555555553332 111 1223333333444444455555555555555444332 33344444444 34
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
.+++++|.++++...+. .+++..+..++..+...++++++.++++.+.... .+.+...+..+...+.+. |+.++|.
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~-G~~~~A~ 166 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL-GDPDKAL 166 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC-CHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHH
Confidence 45555555554444332 1334444444444555555555555555444321 122333333333333333 5555555
Q ss_pred HHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011463 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 256 (485)
+.+++..+..+. +......++..+...|+.+++.++++...+.. +.+...+..+..++...|+.++|...+++..+..
T Consensus 167 ~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 555555444211 34444444444555555554444444443332 2233344444445555555555555555544432
Q ss_pred CCCCHhhHHHHHHHHHcCCChHHHHHHHHHH
Q 011463 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287 (485)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 287 (485)
+.|+.....+..++...|+.++|.++.+++
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -TT-HHHHHHHHHHHT---------------
T ss_pred -cccccccccccccccccccccccccccccc
Confidence 224444444444555555555555444443
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.3e-16 Score=138.65 Aligned_cols=257 Identities=12% Similarity=0.122 Sum_probs=57.9
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcC-CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
...+.+.|++++|.+++....... ++.+...|..+.......++++.|...++++...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445555555555555553332222 12233444444444444555555555555554433 1233334444443 34455
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC-CCCCHHhHHHHHHHHHHcCCHhHHHHHH
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELF 214 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 214 (485)
+++|.+++....+.. ++...+..++..+... ++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ---------------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555544433322 2333334444444443 55555555554443321 1223444444444445555555555555
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 011463 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294 (485)
Q Consensus 215 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (485)
++..+.. |.+......++..+...|+.+++..++....+.. +.|+..+..+..+|...|+.++|..++++...... .
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-D 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-c
Confidence 5544431 1123344444444444444444444444443331 22333344444444444444444444444444321 1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEILDR 321 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (485)
|+.....+..++...|+.++|..+..+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444444444444444444444443
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.7e-11 Score=104.39 Aligned_cols=425 Identities=12% Similarity=0.113 Sum_probs=310.0
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+..=.+++.+..|+.+|+.++ ...|.-...|...+..--..|+...|.++|++-..- .|+...|.+.+..-.+-
T Consensus 114 ae~Emknk~vNhARNv~dRAv----t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRy 187 (677)
T KOG1915|consen 114 AEFEMKNKQVNHARNVWDRAV----TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRY 187 (677)
T ss_pred HHHHHhhhhHhHHHHHHHHHH----HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHh
Confidence 444567889999999999999 233333445666666667889999999999988765 58899999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCChHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA----SLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~~ 174 (485)
+.++.|..+|++..-. .|++.+|......--+.|+...+..+|+...+.- -+.. .+......=.++ ..++.
T Consensus 188 keieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~--~~d~~~e~lfvaFA~fEe~q-kE~ER 262 (677)
T KOG1915|consen 188 KEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL--GDDEEAEILFVAFAEFEERQ-KEYER 262 (677)
T ss_pred hHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999874 6999999999999999999999999999987631 1222 222222222234 77888
Q ss_pred HHHHHHhhhhCCCCCC--HHhHHHHHHHHHHcCCHhHHHHH--------HHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 011463 175 AFKIFREMPNRGCTPD--SYTYGTLINGLCRLGKIYEAKEL--------FKEMETKACSPTVVTYTSLINGLCQSKSVEE 244 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 244 (485)
|.-+|+-.+..= +.+ ...|..+...--+-|+.....+. |+.+... -+.|-.+|--.++.-...|+.+.
T Consensus 263 ar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~ 340 (677)
T KOG1915|consen 263 ARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDR 340 (677)
T ss_pred HHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHH
Confidence 999998888762 222 44555555555556765544433 2333433 24577788888888888999999
Q ss_pred HHHHHHHHHhCCCCCCHh--hHHHHH----H-H---HHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH----HhcC
Q 011463 245 AMRLFEEMRSKGVEPNVF--TYSSLM----D-G---LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL----CKEG 310 (485)
Q Consensus 245 a~~~~~~~~~~~~~~~~~--~~~~l~----~-~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 310 (485)
..++++..+.. ++|-.. .|...+ + + -....+.+.+.++++..++. ++....||..+--.| .++.
T Consensus 341 Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 341 IRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHc
Confidence 99999999976 444221 122111 1 1 12478899999999999885 566777776655444 4678
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-Chh
Q 011463 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389 (485)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 389 (485)
++..|.+++...+. ..|...+|...|..-.+.++++....++++.++-+ +.+..+|. .....-... +.+
T Consensus 419 ~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~-------kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 419 NLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS-------KYAELETSLGDTD 488 (677)
T ss_pred ccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH-------HHHHHHHHhhhHH
Confidence 99999999988774 57889999999999999999999999999999865 23444454 333333333 889
Q ss_pred HHHHHHHHHHhCC-CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-----hcC-------
Q 011463 390 RAFQVYLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW-----DRR------- 456 (485)
Q Consensus 390 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g------- 456 (485)
.|..+|+-+.+.. .......|-..|+.-...|.++.|..+++++++. .+-...|..+...-. +.|
T Consensus 489 RaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e 566 (677)
T KOG1915|consen 489 RARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELE 566 (677)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhh
Confidence 9999999888653 3445677888888888999999999999999987 444456666554322 334
Q ss_pred ----cHHHHHHHHHHHHH
Q 011463 457 ----KMRQAAELLLLELM 470 (485)
Q Consensus 457 ----~~~~A~~~~~~~~~ 470 (485)
....|..+|+++..
T Consensus 567 ~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 567 ITDENIKRARKIFERANT 584 (677)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 46678888877754
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.1e-12 Score=108.43 Aligned_cols=365 Identities=14% Similarity=0.054 Sum_probs=248.7
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhh-
Q 011463 44 NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS- 122 (485)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 122 (485)
.+...|+..+...+..+.+.|..+.|.+.|......-|- ....|..|..... +.+ ....+... .+.+...
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~lit---~~e----~~~~l~~~-l~~~~h~M 228 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELIT---DIE----ILSILVVG-LPSDMHWM 228 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhhc---hHH----HHHHHHhc-CcccchHH
Confidence 444566766777777888889999999999888776443 5556666555432 222 22222221 1222111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCC--CCHHhHHHHHH
Q 011463 123 -YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT--PDSYTYGTLIN 199 (485)
Q Consensus 123 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 199 (485)
---+..++-...+.+++.+-.+.....|++-+. -+.+.+..+.-+..+++.|+.+|+++.+.++- -|..+|+.++.
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~-~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSM-YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccH-HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 123445566677888888888888888864444 34444444444448999999999999987321 16677877764
Q ss_pred HHHHcCCHh-HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChH
Q 011463 200 GLCRLGKIY-EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278 (485)
Q Consensus 200 ~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (485)
+-....... -|..++ .+. +--+.|...+.+-|+-.++.++|...|+...+.+ +-....|+.+..-|....+..
T Consensus 308 v~~~~skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred HHhhhHHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccH
Confidence 432222211 112211 111 2245567777888888899999999999999875 335677888888999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
.|.+-++.+++..+. |-..|-.|.++|.-.+.+.-|+-.|++..... |.|...|.+|..+|.+.++.++|++.|.+..
T Consensus 382 AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 382 AAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999987544 88899999999999999999999999988874 6689999999999999999999999999998
Q ss_pred HCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhC----CC-cc-chhhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 359 LGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR----SI-SV-DSLTYSSLITCFCKKGDIHKSARIVD 431 (485)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 431 (485)
..|-. +...+ ..+...+-.. +..+|.+.|++..+. |. .| ...+---|..-+.+.+++++|.....
T Consensus 460 ~~~dt-e~~~l-------~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 460 LLGDT-EGSAL-------VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred hcccc-chHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 76533 22222 2677777776 888888888877652 22 21 11222224455667777777766555
Q ss_pred HHH
Q 011463 432 ELV 434 (485)
Q Consensus 432 ~~~ 434 (485)
...
T Consensus 532 ~~~ 534 (559)
T KOG1155|consen 532 LVL 534 (559)
T ss_pred HHh
Confidence 544
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=5.8e-14 Score=125.68 Aligned_cols=283 Identities=13% Similarity=0.085 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhhH
Q 011463 27 DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD--ITEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 104 (485)
+.++|+..|+.+. ............+.++|...+++++|.++|+.+.+..+- -+.++|.+.+-.+-+ +-+
T Consensus 334 ~~~~A~~~~~klp----~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLP----SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVA 405 (638)
T ss_pred HHHHHHHHHHhhH----HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHH
Confidence 4556666666632 233333445555666666666666666666666555421 134455544433211 111
Q ss_pred HHHH-HHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 011463 105 MRVF-DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP-CVASLNVLIKALCKNSGTMDAAFKIFREM 182 (485)
Q Consensus 105 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 182 (485)
+..+ +.+.+.+ +..+.+|.++..+|.-+++++.|++.|++..+.. | ...+|..+-..+... .++|.|...|+..
T Consensus 406 Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~-ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 406 LSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIAT-EEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhh-HHHHhHHHHHHhh
Confidence 1111 2222221 3345666666666666666666666666666532 4 444555555555554 5666666666665
Q ss_pred hhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh
Q 011463 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262 (485)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 262 (485)
+..... .-..|.-|...|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|+.+++++...+.. |+.
T Consensus 482 l~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 482 LGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred hcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 544211 2223334455566666666666666665554221 3344444455555556666666666665554322 333
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
.--..+..+...+++++|+..++++.+. ++.+..++..+...|.+.|+.+.|..-|.-+.+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 3333444455555666666666665554 2224445555555666666666665555555543
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=5e-12 Score=106.69 Aligned_cols=294 Identities=17% Similarity=0.155 Sum_probs=187.8
Q ss_pred hcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 011463 62 SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (485)
-.|+|..|+++..+..+.+.. ....|..-..+-...|+.+.+-.++.+..+..-.++........+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 356777777777666555443 2334445555566667777777777766654223444455556666666777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCH-------HhHHHHHHHHHHcCCHhHHHHHH
Q 011463 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS-------YTYGTLINGLCRLGKIYEAKELF 214 (485)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 214 (485)
-+.++.+.+ +-+..........|.+. |++.....++..+.+.|.-.++ .+|..+++-....+..+.-...+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRL-GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 666666654 22344555556666665 7777777777777666543332 35666666665555555555566
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 011463 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294 (485)
Q Consensus 215 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (485)
+..... .+.++..-..++.-+.+.|+.++|.++.++..+.+..|.. . ..-.+.+-++.+.-.+..+....... .
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~~~l~~~d~~~l~k~~e~~l~~h~-~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLIPRLRPGDPEPLIKAAEKWLKQHP-E 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHHhhcCCCCchHHHHHHHHHHHhCC-C
Confidence 665443 3345555666677777778888888887777776555441 1 12234566777777777776666532 3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 366 (485)
++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++....-..|+.
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 5677778888888888888888888876665 578888888888888888888888888777654444443
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.6e-11 Score=106.17 Aligned_cols=397 Identities=12% Similarity=0.021 Sum_probs=260.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT-PKSYITVLAILV 131 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 131 (485)
+.....-|.+.|++++|++.|...++..++ .+..|.....+|...|+|+++.+--.+.++.+ |+ +.++..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~-epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD-EPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC-CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 455567788999999999999999987543 26678888889999999999999888888854 44 567777778888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh-CC--CCCCHHhHHHHHHHHH------
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN-RG--CTPDSYTYGTLINGLC------ 202 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~------ 202 (485)
..|++.+|+.-..-..-.+---+. ....++....+. .+.+..++-.+ .+ +-|+.....+....+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~-s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNA-SIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccc-hhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 888888876654433322111111 111222221111 12222222222 11 2233333322222211
Q ss_pred -------------------HcC---CHhHHHHHHHHHHHC-CCCC--C---------hhhHHHHHHHHHccCCHHHHHHH
Q 011463 203 -------------------RLG---KIYEAKELFKEMETK-ACSP--T---------VVTYTSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 203 -------------------~~~---~~~~a~~~~~~~~~~-~~~~--~---------~~~~~~ll~~~~~~~~~~~a~~~ 248 (485)
..+ .+..|...+.+-... ...+ + ..+......-+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 001 122222222221110 0011 1 11111112223446888999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (485)
|+..++....+ ...|--+...|....+.++.+..|..+.+.++. ++.+|..-.+.+.-.+++++|..=|++.+... +
T Consensus 349 ~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-p 425 (606)
T KOG0547|consen 349 FDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-P 425 (606)
T ss_pred HHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-h
Confidence 99999875433 333777777899999999999999999998655 78888888888888899999999999998864 3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCcc--
Q 011463 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV-- 405 (485)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~-- 405 (485)
-+...|..+.-+..+.++++++...|++..++- |+. ..+|+.....+... +++.|.+.|+...+..+.-
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNC------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCC------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 355667777777778899999999999998753 332 23444778888888 9999999999998764431
Q ss_pred ---ch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 406 ---DS--LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 406 ---~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+. .+--.++..- -.+++..|+.+++++++.+ +-....+..+...-.+.|+.++|+++|++....
T Consensus 498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 1112222222 2489999999999999874 335567888999999999999999999988653
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=3.8e-12 Score=104.20 Aligned_cols=289 Identities=15% Similarity=0.126 Sum_probs=221.5
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC------HhhHHHHHHHHHHcC
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT------PKSYITVLAILVEEN 134 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 134 (485)
.-+.+.++|.++|-+|.+.++. +.++..+|.+.|.+.|..+.|+.+...+.+. || ..+...+..-|...|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 4577899999999999987655 6778888999999999999999999998874 33 223455667788899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCC----HHhHHHHHHHHHHcCCHhHH
Q 011463 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD----SYTYGTLINGLCRLGKIYEA 210 (485)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 210 (485)
-++.|+.+|..+.+.+. --......++..|-.. .+|++|+++-+++.+.+..+. ...|..|...+....+.+.|
T Consensus 122 l~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999987552 3345667777777776 999999999999888765543 23566677777788899999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++...+.+...-..+...|..+|.+.|+.++....+..+.+.
T Consensus 200 ~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999998876432 444555667888999999999999999999876666778888999999999999999999999887
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 011463 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD---IGKYQEAANFLDEMVLG 360 (485)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 360 (485)
... ...-..+........-.+.|...+.+-... +|+...+..++..-.. .|...+....+++|...
T Consensus 279 ~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 279 NTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 443 333444444445555566777666666555 6899999999886543 44566777777777643
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.6e-12 Score=105.12 Aligned_cols=289 Identities=17% Similarity=0.195 Sum_probs=207.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC-CCCC--HHhHHHHHHHHHHcCCHhH
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPD--SYTYGTLINGLCRLGKIYE 209 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~ 209 (485)
.++.++|.++|-+|.+. .|...-.+..+..+.+..|..|.|+++.+.+.++. .+.+ ......|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 56678888888888773 35555555556666666688888888888877752 1111 2234456677888888999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHcCCChHHHHHHHH
Q 011463 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN----VFTYSSLMDGLCKGGCSSQAMELLQ 285 (485)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (485)
|+.+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+..+. ...|..+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999998887643 22455677888889889999999999888887654333 2345666667777888999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011463 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 365 (485)
++.+.+.+ .+..--.+.+.....|+++.|.+.++...+.+...-+.+...|..+|...|+.++....+.++.+....++
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 99887544 55556677788899999999999999999886555567888899999999999999999999987543333
Q ss_pred cccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 011463 366 RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK---KGDIHKSARIVDELVLD 436 (485)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 436 (485)
.. . .+....... ..+.|...+.+-... +|+...+..++..-.. .|...+.+..++.|+..
T Consensus 284 ~~--l-------~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AE--L-------MLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HH--H-------HHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 22 1 333333333 677777777766665 5688888888876643 35567777777777754
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=5.5e-12 Score=106.44 Aligned_cols=286 Identities=13% Similarity=0.104 Sum_probs=199.9
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|++..|++...+..+.+.. ....|..-..+-...|+.+.+-.++.+.-+....++....-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 7777777777776665433 233444445556666777777777777666533444555555666666777777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI-------VTYSTLLNGLCKEGKLQEAVEILDRM 322 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 322 (485)
+++.+.+ +-++........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7776664 335566667777777777777777777777776654443 24555555555555555555666665
Q ss_pred hHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011463 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402 (485)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 402 (485)
... .+.++..-..++.-+.++|+.++|.++.++..+.+-.|+ .. .++....-.+++.-.+..++..+..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-------~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-------RLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-------HHHhhcCCCCchHHHHHHHHHHHhC
Confidence 543 345677777888888899999999999988888765554 11 2222222226666677777766655
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+. ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|++.+|.+..++.+-.
T Consensus 325 ~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 44 6688999999999999999999999988875 899999999999999999999999999998854
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.1e-11 Score=104.74 Aligned_cols=362 Identities=10% Similarity=0.044 Sum_probs=248.7
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP-CVASLNVLI 162 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll 162 (485)
|...+-.....+.+.|....|+..|...... .|-.-.+|..|...+. + ++........+ +. +......++
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~----~e~~~~l~~~l-~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---D----IEILSILVVGL-PSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---h----HHHHHHHHhcC-cccchHHHHHHH
Confidence 3333334444566677778888888777654 2334445554444332 1 22222222222 11 122222222
Q ss_pred -HHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHcc
Q 011463 163 -KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC--SPTVVTYTSLINGLCQS 239 (485)
Q Consensus 163 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~ 239 (485)
.++-.. ...+++..-.+.....|++-+...-+....+.....|+++|+.+|+++.+... -.|..+|..++-.- .
T Consensus 234 ~~a~~el-~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~ 310 (559)
T KOG1155|consen 234 KKAYQEL-HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--N 310 (559)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--h
Confidence 233333 56778888888888888877777777777778888999999999999988721 12456666655332 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
.+..- .-+-...... -+..+.|...+.+.|+-.++.++|..+|++.++.++. ....|+.+..-|...++...|..-+
T Consensus 311 ~~skL-s~LA~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKL-SYLAQNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHH-HHHHHHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22111 1111111111 1334567788888999999999999999999998654 5678888999999999999999999
Q ss_pred HHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccccchhhhHHHHHHHHhcC-ChhHHHHHHHH
Q 011463 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR-LTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397 (485)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~ 397 (485)
++.++.+ |.|...|-.+.++|.-.+...-|+-.|++..+ +.|++ ..|. ++...|.+. ++++|.+.|..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~-------aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWV-------ALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHH-------HHHHHHHHhccHHHHHHHHHH
Confidence 9999886 67899999999999999999999999999987 45553 3444 888888887 99999999999
Q ss_pred HHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLPD--EGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
....+-. +...+..|...|-+.++..+|...|++.++. |...+ .....-|..-+.+.+++++|..+...+..-
T Consensus 458 ai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 458 AILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9887644 6688999999999999999999999988763 32222 122222445566889999998877766653
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.5e-13 Score=121.71 Aligned_cols=288 Identities=15% Similarity=0.106 Sum_probs=223.2
Q ss_pred CCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCC--CCCHhhHHHHHHHHHHcCCHHHHHH
Q 011463 64 NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC--EPTPKSYITVLAILVEENQLKLAFR 141 (485)
Q Consensus 64 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (485)
=+..+|...|+........ +..+...+..+|...+++++|..+|+.+.+... --+...|.+.+-.+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567899999996655444 557788899999999999999999999987531 1245666666644322 22223
Q ss_pred HHH-HHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 142 FYR-HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 142 ~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
.+. .+.+. -+-.+.+|..+...+.-+ ++.+.|++.|++....+.. ...+|+.+..-+.....++.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 332 23332 245678899999888887 9999999999999987433 6788999999999999999999999998764
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHH
Q 011463 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300 (485)
Q Consensus 221 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (485)
... +..+|.-+...|.+.++++.|+-.|+.+.+.+ +.+......+...+.+.|+.++|+++++++...... |+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 211 33455566788999999999999999999876 446777788888899999999999999999988655 555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011463 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363 (485)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (485)
..+..+...+++++|...++++++. ++-+..++..+...|.+.|+.+.|+.-|.-+.....+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 5566777889999999999999886 3556778888999999999999999999988875433
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=9.8e-11 Score=103.30 Aligned_cols=435 Identities=11% Similarity=0.023 Sum_probs=291.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.+..-+..+.++..|+-+-++.. +...|+.....+++++.-.|++++|..++..-.-. ..+..........+.
T Consensus 21 ~~~r~~l~q~~y~~a~f~adkV~-----~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 21 RLVRDALMQHRYKTALFWADKVA-----GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH-----hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Confidence 34444556677777777777776 44466666667788888888888888887765333 236677777778888
Q ss_pred ccCChhhHHHHHHHH----Hhc---------CCCCCHhh-----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011463 97 RVHRPLDAMRVFDKM----KEF---------GCEPTPKS-----------YITVLAILVEENQLKLAFRFYRHMREIGIQ 152 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~----~~~---------~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (485)
+..+++.|..++... ... -+.++..- +-.-...|....+.++|...|.+.....
T Consensus 94 ~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D-- 171 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD-- 171 (611)
T ss_pred HHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc--
Confidence 888888888888722 100 00111111 1111233445566777777777765432
Q ss_pred CCHHHHHHH---HHHHHhc----------------CC-ChHHHHHHHHhhhh----------------CCCCCCHHhHHH
Q 011463 153 PCVASLNVL---IKALCKN----------------SG-TMDAAFKIFREMPN----------------RGCTPDSYTYGT 196 (485)
Q Consensus 153 ~~~~~~~~l---l~~~~~~----------------~~-~~~~a~~~~~~~~~----------------~~~~~~~~~~~~ 196 (485)
...+..+ +....-. .+ +.+....+|+.... .+..-+......
T Consensus 172 --~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 172 --AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred --hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 2222111 1111000 01 11112222221100 012223444455
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCC
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 276 (485)
...-+...+++.+..++.+...+. .++....+..-|.++.+.|+..+-..+-.++.+. .+-.+.+|-++.-.|.-.|.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC
Confidence 566677889999999999998876 3556667777778999999998888888888877 35577889999988989999
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356 (485)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (485)
..+|.+.|.+....+.. =...|-.+...|...|..+.|...+....+. ++-...-+--+..-|.+.++.+.|.++|.+
T Consensus 328 ~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999998775332 3457888888999999999999988877654 111222233455568889999999999999
Q ss_pred HHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhC--CCc----cchhhHHHHHHHHHhcCCHHHHHHH
Q 011463 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR--SIS----VDSLTYSSLITCFCKKGDIHKSARI 429 (485)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~a~~~ 429 (485)
... +.|+..... +-+.-..... .+.+|..+|+..+.. ... --..+++.|+.+|.+.+.+++|+..
T Consensus 406 A~a--i~P~Dplv~------~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 406 ALA--IAPSDPLVL------HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHh--cCCCcchhh------hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 876 556654322 1222222223 788999999887731 111 1234588899999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
+++.+.. .+.+..++.+++-.|...|+++.|++.|.+++-.....
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 9999987 36688889999999999999999999999999866544
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.3e-11 Score=100.05 Aligned_cols=418 Identities=11% Similarity=0.098 Sum_probs=223.2
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+.-+....|+..|+.+++... ..+-.....+-.-+...+.+.|++++|...+..+.... .++...+..+...+.-.
T Consensus 29 Ledfls~rDytGAislLefk~---~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL---NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh---ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHH
Confidence 345666778888888887665 22222122233334566678888888888887776643 44666676676666667
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
|.+.+|..+-.+..+ ++-....+.....+.++-++...+.+.+... ...-.++....... -.+.+|+++
T Consensus 105 g~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR-~HYQeAIdv 173 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMR-MHYQEAIDV 173 (557)
T ss_pred HHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHH-HHHHHHHHH
Confidence 777777776655432 3334444445555556655555544444321 11111222222222 356667777
Q ss_pred HHhhhhCCCCCCHHhHHH-HHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--C---------------
Q 011463 179 FREMPNRGCTPDSYTYGT-LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS--K--------------- 240 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~--------------- 240 (485)
+.+....+ |+-...|. +.-+|.+..-++-+.++++-.... ++.+....|....-..+. |
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 76666542 22222222 333455566666666666555443 222222222222211111 1
Q ss_pred ------------------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 011463 241 ------------------SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302 (485)
Q Consensus 241 ------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (485)
+-+.|++++-.+.+. -| ..--.++-.|.+.++..+|..+.+.+... ++.-|-.-
T Consensus 251 ~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilK 322 (557)
T KOG3785|consen 251 QEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILK 322 (557)
T ss_pred ccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHH
Confidence 122233333222221 11 12234455677888888888877765221 22222221
Q ss_pred HHHHHhcCC-------HHHHHHHHHHHhHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhh
Q 011463 303 LNGLCKEGK-------LQEAVEILDRMKLQGLKPD-AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374 (485)
Q Consensus 303 ~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
...+...|+ ..-|...|+..-+.+..-| ..-...+..++.-..++++++.++..+...-...|...+
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~----- 397 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL----- 397 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-----
Confidence 222223332 3445555554444433222 223345555666667788888888887765444444444
Q ss_pred hHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHH
Q 011463 375 IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY-SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS-AVMTA 451 (485)
Q Consensus 375 ~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~ 451 (485)
.+..+.+.. ++.+|.++|-.+....++ |..+| ..|.++|.+++.++-|..++-++. .+.+..... .+...
T Consensus 398 ---N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 398 ---NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIAND 470 (557)
T ss_pred ---HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHH
Confidence 455555555 888888888888776666 44555 445678888888888877665543 233333333 34556
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCC
Q 011463 452 LWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
|.+.+.+--|.+.|...-..++.
T Consensus 471 CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHhhhHHHccCCC
Confidence 88888888888888766555443
No 55
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=3e-10 Score=104.39 Aligned_cols=433 Identities=12% Similarity=0.078 Sum_probs=268.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
-..++...|++++|++.++... ..+......+...+..+.+.|+.++|..++..++..+|. +..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~----~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNE----KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhh----hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhh
Confidence 3567889999999999998866 455556777888899999999999999999999999865 66666666666532
Q ss_pred c-----CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 98 V-----HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL-KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 98 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
. .+.+....+|+++.+.- |...+...+.-.+.....+ ..+..++..+...|+++ ++..+-..|... ..
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~-~K 158 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDP-EK 158 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcCh-hH
Confidence 2 35677788999887753 4444433332222222223 35566777778888744 334444333333 44
Q ss_pred hHHHHHHHHhhhhC----C----------CCCCH--HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011463 172 MDAAFKIFREMPNR----G----------CTPDS--YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235 (485)
Q Consensus 172 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 235 (485)
.+...+++...... + -+|+. .++..+...|...|++++|++.+++.++.. +..+..|..-.+.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 45555555554322 1 12333 355667888889999999999999998873 2246778888899
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhh--------HHHHHHHHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT--------YSTLLNGLC 307 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~ 307 (485)
+-+.|++.+|.+.++..+..+ ..|...-+-....+.+.|+.++|.+++......+..|-... ......+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886 34777777788899999999999999999988764332221 234567888
Q ss_pred hcCCHHHHHHHHHHHhHC-------CC--------CCCHHhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCC
Q 011463 308 KEGKLQEAVEILDRMKLQ-------GL--------KPDAGLYGKIISCFCDIGK-------YQEAANFLDEMVLGGITPN 365 (485)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~-------~~--------~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~ 365 (485)
+.|++..|++.|..+.+. .+ +.+..+|..+++..-+... ...|.+++-++........
T Consensus 317 r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~ 396 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQ 396 (517)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999988877665432 00 1233344444443222211 2335555555544321100
Q ss_pred ccc----ccchhhh-HHHHHHHHhc----CChhHHHHHHHHHH------------hCCCccchhhHHHHHHHHHhcC-CH
Q 011463 366 RLT----WSLHIRI-HNTVVQGLCK----TDPNRAFQVYLSMR------------NRSISVDSLTYSSLITCFCKKG-DI 423 (485)
Q Consensus 366 ~~~----~~~~~~~-~~~l~~~~~~----~~~~~a~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g-~~ 423 (485)
... ....... -..+..-..+ ..-+++...-.+-. ....+.|. ..+..-+.+.. -.
T Consensus 397 ~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~---Dp~GekL~~t~dPL 473 (517)
T PF12569_consen 397 GEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD---DPLGEKLLKTEDPL 473 (517)
T ss_pred ccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC---CccHHHHhcCCcHH
Confidence 000 0000000 0000000000 01111111100000 00001111 12233344544 46
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHH
Q 011463 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467 (485)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 467 (485)
++|.++++-+.+.+ +.+..+|.....+|.+.|++--|.+.+.+
T Consensus 474 e~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 474 EEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 88999999999873 55778999999999999999999988765
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.9e-10 Score=95.67 Aligned_cols=385 Identities=10% Similarity=0.054 Sum_probs=237.4
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
+.-+...+++..|+.+++.-...+-.-...+-.-+..++...|++++|+..+..+.+.. .++...+..+..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55567789999999999877654432111222234456778999999999999988754 57778888888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHH
Q 011463 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216 (485)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 216 (485)
.+|..+-.+. |+......++-.++...++-++...+.+.+.. ....-.+|.......-.+.+|+++|+.
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999887654 33344444444444333777777666666554 234445666777777789999999999
Q ss_pred HHHCCCCCChhhHHHH-HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHH--------
Q 011463 217 METKACSPTVVTYTSL-INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM-------- 287 (485)
Q Consensus 217 ~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------- 287 (485)
.... .|.....|.. .-+|.+..-++-+.+++.--.+. ++.++...|..+....+.=.-..|..-...+
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 9875 3455555543 45667777788888888777665 2334445554444333321111122111111
Q ss_pred ------HhCC------------CCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhc
Q 011463 288 ------ISKR------------HRP-----NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344 (485)
Q Consensus 288 ------~~~~------------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 344 (485)
.+++ +-| -+..--.|+--|.+.+++.+|..+.+++. |.++.-|..-.-.++..
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAAL 329 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHh
Confidence 1111 001 12222344556788999999999887765 33333333323334444
Q ss_pred CC-------HHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHH
Q 011463 345 GK-------YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITC 416 (485)
Q Consensus 345 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 416 (485)
|+ ..-|.+.|+-.-+.+..-|...-. ..+...+.-. .+++.+..+..+..--...|...+ .+..+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR------QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGR------QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccch------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 43 445666666554444443332222 1333333334 778888888777764333344444 46889
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCcHHHHHHHHHHH
Q 011463 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWS-AVMTALWDRRKMRQAAELLLLE 468 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~ 468 (485)
++..|++.+|.++|-+.....++ +..+|. .+.++|.+.++++-|.+++-++
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 99999999999999888755444 444554 5677788999999997766543
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.1e-09 Score=91.44 Aligned_cols=291 Identities=11% Similarity=0.032 Sum_probs=215.1
Q ss_pred CChHHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 248 (485)
++...+...+-.+... -++.+......+.+++...|+..+|+..|++.+..+. -+..........+.+.|+.+....+
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHHH
Confidence 4444444444333333 2556888899999999999999999999999876421 1223333344456678899988888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (485)
...+.... .-+...|-.-+.......+++.|+.+-++.++.+.. +...+-.-...+...|++++|.-.|+..+... |
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-P 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-h
Confidence 88877642 223344444455556778899999999998887443 45555555667888999999999999988763 4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHH-HHHhcC--ChhHHHHHHHHHHhCCCcc
Q 011463 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV-QGLCKT--DPNRAFQVYLSMRNRSISV 405 (485)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~--~~~~a~~~~~~~~~~~~~~ 405 (485)
-+..+|..++.+|...|.+.+|...-+...+.- ..+..++. .+. ..+... .-++|.+++++.....+.
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~Lt-------L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~- 436 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLT-------LFGTLVLFPDPRMREKAKKFAEKSLKINPI- 436 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhh-------hhcceeeccCchhHHHHHHHHHhhhccCCc-
Confidence 578899999999999999999998887776531 22333332 221 122222 568899999999887654
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
-....+.+...|...|..++++.++++.... .||....+.+...+...+.+++|.+.|..++..++.+
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 3456677888999999999999999999875 7999999999999999999999999999999877544
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=8.4e-10 Score=99.12 Aligned_cols=432 Identities=14% Similarity=0.113 Sum_probs=286.5
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+.-+...+++...++..+.++ .+.+...++....+-.+...|+-++|.+..+.....++. +...|+.+.-.+...
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL----~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQIL----KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHH----HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 334566889999999999999 355666777777778888999999999999999998776 788999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCChHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV-ASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
.++++|++.|......+ +.|...+.-+.-.-++.++++.....-.++.+.. |.. ..|..+.-+..-. |++..|..
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~-g~y~~A~~ 164 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLL-GEYKMALE 164 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999999876 5577888877777788899888888877777643 433 3444444444455 99999999
Q ss_pred HHHhhhhCC-CCCCHHhHHHHH------HHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 011463 178 IFREMPNRG-CTPDSYTYGTLI------NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250 (485)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 250 (485)
+++...+.. -.|+...+.... ....+.|..+.|.+.+...... +......-..-...+.+.++.++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999988764 245665554433 3356778888888887776543 11122223344567888999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHH-HHHcCCChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC
Q 011463 251 EMRSKGVEPNVFTYSSLMD-GLCKGGCSSQAM-ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (485)
.+... .||...|...+. ++.+-.+.-++. .+|....+. .+.....-..-+.......-.+....++..+.+.|++
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 99987 466666655544 443344444444 666666554 2111111111122222222234455667777788865
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCcccccchhhhHHHHHHHHhcC-ChhHHHH
Q 011463 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLG----G----------ITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393 (485)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~ 393 (485)
+ ++..+...|-.-...+-..++.-.+... | -+|....|. +-.+...+-.. +++.|..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt-----~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT-----LYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH-----HHHHHHHHHHcccHHHHHH
Confidence 4 4444444443322222111222222111 1 123333332 11344444555 8999999
Q ss_pred HHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 011463 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473 (485)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 473 (485)
+++...++-+. -+..|..=.+.+...|++++|..++++..+.+ .||...-...+.-..++++.++|.+++.+-.+.|.
T Consensus 393 yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 393 YIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99999987332 23445555688889999999999999999874 45554444677777899999999999888777763
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.54 E-value=7e-12 Score=119.20 Aligned_cols=268 Identities=12% Similarity=0.079 Sum_probs=181.8
Q ss_pred CCCHHhHHHHHHHHH-----hcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh---------ccCChhhHHHHHHHHH
Q 011463 47 RHDNSTFSLMISKLV-----SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG---------RVHRPLDAMRVFDKMK 112 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 112 (485)
+.+...|...+++.. ..+++++|.+.|+++.+..|. +...+..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 445555555554431 234688999999999988765 5666666665543 2345789999999998
Q ss_pred hcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCH
Q 011463 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191 (485)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 191 (485)
+.+ |.+..++..+...+...|++++|...|++..+.+ |+ ...+..+...+... |++++|...++++.+.++. +.
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~-G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMA-GQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-Ch
Confidence 875 4567788888888889999999999999998865 54 44555555666666 9999999999999887543 33
Q ss_pred HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011463 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271 (485)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (485)
..+..++..+...|++++|...+++......+.+...+..+..++...|+.++|...+.++.... +.+....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 33444555567788999999999988765323345556777788889999999999998876552 22344455566666
Q ss_pred HcCCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC
Q 011463 272 CKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (485)
...| +++...++.+.+... .+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 477777777655411 1122222 33445556676666655 7777653
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=3.7e-11 Score=114.33 Aligned_cols=265 Identities=12% Similarity=0.070 Sum_probs=183.4
Q ss_pred CHHHHHHHHHHHhc-----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH---------cCCHHHHHHHHHHHHHc
Q 011463 84 TEDIFLSICRGYGR-----VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE---------ENQLKLAFRFYRHMREI 149 (485)
Q Consensus 84 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 149 (485)
+...|...+.+-.. .++.++|+..|++..+.. |.+...|..+..++.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 55555555544221 245679999999999864 3346667666655542 24588999999999986
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhh
Q 011463 150 GIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228 (485)
Q Consensus 150 ~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 228 (485)
. |+ ...+..+...+... |++++|...++++.+.++. +...+..+..++...|++++|...+++..+.... +...
T Consensus 334 d--P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 334 D--HNNPQALGLLGLINTIH-SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred C--CCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 5 54 44455555555565 9999999999999988533 6778888999999999999999999999886432 2223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (485)
+..++..+...|++++|...++++.+...+-++..+..+..++...|+.++|...+.++.... +.+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 344455567789999999999998876423345557778888899999999999999876652 2234445556666677
Q ss_pred cCCHHHHHHHHHHHhHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 309 EGKLQEAVEILDRMKLQG-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
.| +.|...++.+.+.. ..+....+ .-..+.-.|+.+.+..+ +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 77 47777777765531 11222222 34445567777777666 777654
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.1e-10 Score=100.26 Aligned_cols=291 Identities=14% Similarity=0.073 Sum_probs=229.2
Q ss_pred CCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHH
Q 011463 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231 (485)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 231 (485)
.-+......-...+... +++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .|....+|-+
T Consensus 241 ~~~~dll~~~ad~~y~~-c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYG-CRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHc-ChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34555666666777777 99999999999999874 345556666677899999988888888888776 3457889999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011463 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311 (485)
Q Consensus 232 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (485)
+.--|...|+..+|.+.|.+....+.. =...|-.+...+.-.|..++|+..+..+.+. ++-....+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 999999999999999999998765422 2456888889999999999999999888775 22122223334556888999
Q ss_pred HHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcccccchhhhHHHHHHHHhcC-Ch
Q 011463 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG--GITPNRLTWSLHIRIHNTVVQGLCKT-DP 388 (485)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 388 (485)
.+.|.+.|.+..... |.|+.+++.+.-.....+.+.+|..+|+..+.. .+.+....|. ...+.+...+.+. .+
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~---p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE---PTLNNLGHAYRKLNKY 471 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh---HHHHhHHHHHHHHhhH
Confidence 999999999988764 668888998888888899999999999988732 1223332343 4455788888888 99
Q ss_pred hHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (485)
++|+..+++.+...++ +..++.++.-.|...|+++.|++.|.+.... .|+..+...++..+..
T Consensus 472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 9999999999988777 8999999999999999999999999999864 8888777777665443
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.5e-09 Score=95.15 Aligned_cols=420 Identities=14% Similarity=0.086 Sum_probs=242.5
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
=++.+..+|++++|.+...+++ ...|.+...+..-+.++++.++|++|+.+.+.-.... .+..-+..-..+..+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil----~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKIL----SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHH----hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHH
Confidence 3566778999999999999999 4557788889999999999999999996665433211 111111233444558
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
.++.++|+..++-.. +.+..+...-.+.+.+.+++++|..+|+.+.+.+.+.... ..-...... +..-.+.
T Consensus 92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~--~~r~nl~a~--~a~l~~~- 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE--ERRANLLAV--AAALQVQ- 162 (652)
T ss_pred cccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH--HHHHHHHHH--HHhhhHH-
Confidence 899999999998332 2345577778888999999999999999998876422111 111111111 1111121
Q ss_pred HHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC-------CCCCh-------hhHHHHHHHHHccCCHH
Q 011463 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-------CSPTV-------VTYTSLINGLCQSKSVE 243 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~ll~~~~~~~~~~ 243 (485)
+.+..... ...+-..+......+...|++.+|+++++.....+ -..+. ..-..+.-.+-..|+-+
T Consensus 163 ~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 22222221 11122223334445667788888888887762210 00000 01123344556678888
Q ss_pred HHHHHHHHHHhCCCCCCHhhH----HHHHHHHHcC---------------------------------------------
Q 011463 244 EAMRLFEEMRSKGVEPNVFTY----SSLMDGLCKG--------------------------------------------- 274 (485)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~--------------------------------------------- 274 (485)
+|..++...++.+ .+|.... |.++..-...
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888877764 2333221 1111110000
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 011463 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC--KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352 (485)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 352 (485)
+..+.+.++..... +..| ...+..++..+. +...+..+..++...-+....-...+.-.+++.....|+++.|++
T Consensus 321 nk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 NKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 00111111111100 1112 233344444332 222467777777777665322234456667777889999999999
Q ss_pred HHH--------HHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhC--CCccchh----hHHHHHHHH
Q 011463 353 FLD--------EMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR--SISVDSL----TYSSLITCF 417 (485)
Q Consensus 353 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~ 417 (485)
++. ...+.+..|..+. ++...+.+. +.+.|-.++.+..+. .-.+... ++..+...-
T Consensus 398 il~~~~~~~~ss~~~~~~~P~~V~---------aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPGTVG---------AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred HHHHHhhhhhhhhhhhccChhHHH---------HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 999 5555455555433 444555554 555566666555431 0011222 333333444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 011463 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468 (485)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 468 (485)
.+.|+.++|...++++.+.+ ++|..+...++.+|++.. ++.|..+-.+.
T Consensus 469 lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 57799999999999999863 778888888999988764 67776655443
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.49 E-value=6.7e-09 Score=93.38 Aligned_cols=427 Identities=10% Similarity=0.110 Sum_probs=253.3
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCC--CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRH--DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
++.+..+|++...+..|+.++. ..|. ....|...+......|-++.+..++++.++. ++..-...+..++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALr----aLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALR----ALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHH----hCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 4567778888888888888882 3233 2446777888888888888888888888875 4445677777888
Q ss_pred ccCChhhHHHHHHHHHhcC------CCCCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCCCH--HHHHHHHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFG------CEPTPKSYITVLAILVEENQLKL---AFRFYRHMREIGIQPCV--ASLNVLIKAL 165 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~--~~~~~ll~~~ 165 (485)
+.+++++|.+.+....... -+.+...|..+-...++..+.-. ...+++.+... -+|. ..|.++...|
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY 258 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence 8888888888888775431 13445556666555555443322 23333333332 1332 4677888888
Q ss_pred HhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc----------------CC------HhHHHHHHHHHHHCC--
Q 011463 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL----------------GK------IYEAKELFKEMETKA-- 221 (485)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~------~~~a~~~~~~~~~~~-- 221 (485)
.+. |.+++|..+|++.... ..+..-|+.+.++|+.- ++ ++-....|+.+....
T Consensus 259 Ir~-g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 259 IRS-GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHh-hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 887 9999999998887765 22344444444444321 11 222233333333221
Q ss_pred ---------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC------CHhhHHHHHHHHHcCCChHHHHHHHHH
Q 011463 222 ---------CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP------NVFTYSSLMDGLCKGGCSSQAMELLQM 286 (485)
Q Consensus 222 ---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (485)
-+.+...|..-.. ...|+..+-...+.++.+. +.| -...|..+.+.|-..|+.+.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1122333333222 2346677777777777654 222 134577788888899999999999998
Q ss_pred HHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC-----------------CCHHhHHHHHHHHHhcCC
Q 011463 287 MISKRHRPN---IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK-----------------PDAGLYGKIISCFCDIGK 346 (485)
Q Consensus 287 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~ 346 (485)
..+-..+.- ..+|......=.+..+++.|.+++++.....-+ .+...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 877643321 344555555556778888888888876543111 122345555555556677
Q ss_pred HHHHHHHHHHHHHCCCC-CCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccch-hhHHHHHHHHHh-cC-
Q 011463 347 YQEAANFLDEMVLGGIT-PNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS-LTYSSLITCFCK-KG- 421 (485)
Q Consensus 347 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~g- 421 (485)
++....+++++....+. |.... .....+-.+ -+++++++|++-...-..|+. ..|+..+.-+.+ -|
T Consensus 493 festk~vYdriidLriaTPqii~---------NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIII---------NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH---------HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 88888888888765432 21100 111111222 567777777776655333433 456666555443 22
Q ss_pred -CHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCcHHHHHHHHHHHHHc
Q 011463 422 -DIHKSARIVDELVLDGCLPDEGTWSAVMTA--LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 422 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 471 (485)
..+.|..+|+++++ |++|...-..-++-+ =-+.|....|+.+++++...
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 56778888888887 566654332222222 12457777777777776554
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=2.3e-10 Score=105.17 Aligned_cols=299 Identities=14% Similarity=0.106 Sum_probs=215.9
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
........+...|++++|++.++.-...-++ ...........+.+.|+.++|..+|..+++.+ |.+..-|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~D-k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILD-KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 3344456788999999999999887665433 55677788899999999999999999999986 334444555555542
Q ss_pred H-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 132 E-----ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM-DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 132 ~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
- ..+.+...++|+.+...- |.......+.-.+... ..+ ..+..++..+...|++ .+|+.|-..|....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g-~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEG-DEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPE 157 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCH-HHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChh
Confidence 2 235778888999887754 5544444333333222 233 3455667777778865 35666666666555
Q ss_pred CHhHHHHHHHHHHHC----C----------CCCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011463 206 KIYEAKELFKEMETK----A----------CSPTV--VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269 (485)
Q Consensus 206 ~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 269 (485)
...-..+++...... + -+|+. .++..+...|...|++++|+..++..++.. +..+..|..-.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 555555565555432 1 12333 344666788889999999999999999873 334778888899
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHH--------hHHHHHHHH
Q 011463 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG--------LYGKIISCF 341 (485)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~ 341 (485)
.+-+.|++.+|.+.++.+...... |...-+..+..+.+.|+.++|.+++....+.+..|... .......+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998655 88888888999999999999999999988776433222 224567789
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 011463 342 CDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~ 360 (485)
.+.|++..|++.|..+.+.
T Consensus 316 ~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999988887664
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=8e-09 Score=93.05 Aligned_cols=425 Identities=12% Similarity=0.103 Sum_probs=274.4
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
.+...|+-++|....+..+ .+-..+...|..++-.+....++++|+..|..+...+++ |..++..+.-.-++.|+
T Consensus 50 ~L~~lg~~~ea~~~vr~gl----r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGL----RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRD 124 (700)
T ss_pred hhhcccchHHHHHHHHHHh----ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHh
Confidence 4566899999999999888 455667889999999999999999999999999998876 88899999888889999
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH------HhcCCChH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIKAL------CKNSGTMD 173 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~------~~~~~~~~ 173 (485)
++.......++.+.. +.....|..+..++.-.|+...|..+++...+.. -.|+...+......+ ... |..+
T Consensus 125 ~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~-g~~q 202 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA-GSLQ 202 (700)
T ss_pred hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc-ccHH
Confidence 999998888888753 3456678888889999999999999999988764 246665554433332 344 7788
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHH-HHHHccCCHHHHH-HHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI-NGLCQSKSVEEAM-RLFEE 251 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~-~~~~~ 251 (485)
.|.+.+...... +.-....-..-...+.+.+++++|..++..+... .||...|...+ .++.+-.+.-++. .+|..
T Consensus 203 ~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 203 KALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888877665543 1112222334556788999999999999999886 45665555544 4444333333444 66666
Q ss_pred HHhCCCCCCHhhH-HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh----HCC
Q 011463 252 MRSKGVEPNVFTY-SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK----LQG 326 (485)
Q Consensus 252 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~ 326 (485)
..+. .|....- ..=+.......-.+..-.++....+.|+++ ++..+...|-.....+-..++.-.+. ..|
T Consensus 280 ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~ 354 (700)
T KOG1156|consen 280 LSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTG 354 (700)
T ss_pred Hhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhccccc
Confidence 6544 1211111 111112222223344556666777776654 34444444432222211111111111 111
Q ss_pred ----------CCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHH
Q 011463 327 ----------LKPDAGL--YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393 (485)
Q Consensus 327 ----------~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~ 393 (485)
-+|.... +-.++..+-..|+++.|..+++..... .|+..-. |-.=...+... +++.|..
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEl------y~~KaRI~kH~G~l~eAa~ 426 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIEL------YLVKARIFKHAGLLDEAAA 426 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHH------HHHHHHHHHhcCChHHHHH
Confidence 1444443 445677888999999999999988753 4543322 11222333334 8899999
Q ss_pred HHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C----ChhhHHH--HHHHHHhcCcHHHHHHHH
Q 011463 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL--P----DEGTWSA--VMTALWDRRKMRQAAELL 465 (485)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p----~~~~~~~--l~~~~~~~g~~~~A~~~~ 465 (485)
++++..+.... |...-.--..-..++++.++|.++.....+.|.. . -.-.|-. -+.+|.+.|++..|.+-+
T Consensus 427 ~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 427 WLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 99988876533 5444445566667889999999998888877631 0 0112222 245778888888887666
Q ss_pred HHHH
Q 011463 466 LLEL 469 (485)
Q Consensus 466 ~~~~ 469 (485)
..+-
T Consensus 506 h~i~ 509 (700)
T KOG1156|consen 506 HEIE 509 (700)
T ss_pred hhHH
Confidence 5543
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=4.8e-11 Score=101.42 Aligned_cols=199 Identities=14% Similarity=0.074 Sum_probs=105.6
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
...+..+...+...|++++|.+.++++....+. +...+..+...+...|++++|.+.+++..+.+ +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 445566666666666666666666666655433 45555666666666666666666666666543 3344555556666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQP-CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
+...|++++|.+.+++.......+ ....+..+...+... |++++|...+++..+.... +...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA-GDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 666666666666666665432111 122233333333444 5555555555555544211 3344455555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
+|...+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555443 22233334444444555555555555544443
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=6.3e-11 Score=100.68 Aligned_cols=199 Identities=14% Similarity=0.051 Sum_probs=164.4
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..++..+...|++++|++.++++.. ..|.+...+..+...+...|++++|.+.+++.....+. +...+..+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALE----HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 345667888999999999999999982 33566788899999999999999999999999988765 6678888999
Q ss_pred HHhccCChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
.+...|++++|.+.+++..+... +.....+..+..++...|++++|.+.+.+..+.. +.+...+..+...+... |++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLR-GQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHc-CCH
Confidence 99999999999999999987421 2345567778888999999999999999998864 23455666777777777 999
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998877 3446777778888899999999999988877653
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.46 E-value=3.3e-09 Score=97.38 Aligned_cols=414 Identities=12% Similarity=0.050 Sum_probs=246.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCC-CCCHhhH
Q 011463 45 GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC-EPTPKSY 123 (485)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 123 (485)
.+..++..|..+.-++...|+++.+.+.|++....-.. ..+.|..+...|...|.-..|..+++.-....- +++...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34557777777777788888888888888877665443 566777777778888887778877776654321 2234444
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHh---cC-------CChHHHHHHHHhhhhCCCC
Q 011463 124 ITVLAILVE-ENQLKLAFRFYRHMREI--GI--QPCVASLNVLIKALCK---NS-------GTMDAAFKIFREMPNRGCT 188 (485)
Q Consensus 124 ~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~---~~-------~~~~~a~~~~~~~~~~~~~ 188 (485)
...-..|.+ .+..++++.+-.++... +. ......+..+.-+|.. .. ....++++.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444444543 46666777666666552 11 0111222222222211 10 1124566667777666433
Q ss_pred CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011463 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268 (485)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 268 (485)
|+.....+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.....- .-|......-+
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 3333334444567777888888888888777555677778877777888888888888877766541 11111111111
Q ss_pred HHHHcCCChHHHHHHHHHHHhC---------------------C-------CCCChhhHHHHHHHHHhcC---CHHHHHH
Q 011463 269 DGLCKGGCSSQAMELLQMMISK---------------------R-------HRPNIVTYSTLLNGLCKEG---KLQEAVE 317 (485)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~---~~~~a~~ 317 (485)
..-...++.++++.....++.. | ..-...++..+..-....+ ..+..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 1122244444444443333221 0 0001111111111111000 00000
Q ss_pred HHHHHhHCCCCC--C------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-Ch
Q 011463 318 ILDRMKLQGLKP--D------AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388 (485)
Q Consensus 318 ~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 388 (485)
+....+.| + ...|......+.+.+..++|...+.+..... |-.. .+|......+... ..
T Consensus 633 ----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~------~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 633 ----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSA------SVYYLRGLLLEVKGQL 700 (799)
T ss_pred ----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhH------HHHHHhhHHHHHHHhh
Confidence 11111112 1 1245556677888899999988888876532 2211 1222332333333 88
Q ss_pred hHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 011463 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR--IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 466 (485)
++|.+.|......++. ++.+..++..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|.
T Consensus 701 ~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999999999888766 77889999999999998888877 999999875 5577889999999999999999999999
Q ss_pred HHHHcCCCccc
Q 011463 467 LELMNKCVEAE 477 (485)
Q Consensus 467 ~~~~~~~~~~~ 477 (485)
.+++...-.|-
T Consensus 779 aa~qLe~S~PV 789 (799)
T KOG4162|consen 779 AALQLEESNPV 789 (799)
T ss_pred HHHhhccCCCc
Confidence 99997654443
No 69
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=2.7e-10 Score=105.78 Aligned_cols=239 Identities=14% Similarity=0.221 Sum_probs=128.5
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
|.+++|+.++.-|+..|+.+.|- +|..|. ....+.+...++.++......++.+.+. .|..++|.
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~---~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFME---IKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhh---cccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 34566666666666666666665 666665 4455555666666666666666655544 35566677
Q ss_pred HHHHHHhccCChhh---HHHHHHHHH----hcCCCCCHhhH--------------HHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 90 SICRGYGRVHRPLD---AMRVFDKMK----EFGCEPTPKSY--------------ITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 90 ~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
.|..+|...||... ..+.+..+. ..|+.....-+ ...+....-.|-++.+++++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 77777777766543 222111111 11211000000 1112222223333333333332221
Q ss_pred cC-CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChh
Q 011463 149 IG-IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227 (485)
Q Consensus 149 ~~-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 227 (485)
.. ..|. ..++.........+++-..+.+...+ .|++.++..++.+-...|+.+.|..++.+|.+.|++.+..
T Consensus 168 sa~~~p~----~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 168 SAWNAPF----QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred ccccchH----HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 10 0011 11133222221223333333333222 4677788888888888888888888888888888777776
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (485)
-|-.++-+ .++...+..++.-|.+.|+.|+..|+.-.+..+..
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 66666554 67777777778888888888887777665555554
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=8.9e-12 Score=102.19 Aligned_cols=230 Identities=15% Similarity=0.087 Sum_probs=164.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHc
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (485)
..+.++|.+.|-+.+|.+-++..++. .|.+++|..|..+|.+..+++.|+.++.+-.+. +|-++....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667788888888888888877776 346677777788888888888888888877764 233333345566777778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHH
Q 011463 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213 (485)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 213 (485)
++.+.|.++|+...+.. +.++.....+...+.-. ++++.|+.++++++..|.. ++..|+.+.-+|.-.++++-++..
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~-~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYD-NNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccC-CChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 88888888888877654 23344444444455555 7888888888888888766 777888888888888888888888
Q ss_pred HHHHHHCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 214 FKEMETKACSPT--VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 214 ~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
|.+....-..|+ ...|..+.......|++..|.+.|+-....+ ......++.|.-.-.+.|++++|..+++.+.+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 777765433232 3456667777777788888888888777664 335667777777777888888888888877665
No 71
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=6.9e-10 Score=90.20 Aligned_cols=194 Identities=15% Similarity=0.114 Sum_probs=111.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHH
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISK-RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (485)
+|.-...+.+.|+++.|.+-+..|..+ ....|+.|...+.-.- ..+++.+...-+.-+...+ |....||..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 344444567889999999888887544 2345777776654332 2355666666666666664 455788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC--ChhHHHHHHHHHHhCCCccchhhHHHHHHHH-Hh
Q 011463 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT--DPNRAFQVYLSMRNRSISVDSLTYSSLITCF-CK 419 (485)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 419 (485)
+..-++.|-.++.+- |+ .||..+..-.--++.++... .++++++-++.+...- ....-...+..- .+
T Consensus 322 KNeyf~lAADvLAEn------~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r 391 (459)
T KOG4340|consen 322 KNEYFDLAADVLAEN------AH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEAR 391 (459)
T ss_pred hhHHHhHHHHHHhhC------cc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 999999988887653 33 23332222222445555554 8888887776554320 000001111111 11
Q ss_pred c-CC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 011463 420 K-GD---IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473 (485)
Q Consensus 420 ~-g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 473 (485)
. ++ ...+++-+++..+. -.....+..+.+++..++..+.+.|.+..+-..
T Consensus 392 ~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 392 HNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred hcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 1 12 12233334433332 122344456678889999999999988776543
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.8e-11 Score=100.42 Aligned_cols=230 Identities=11% Similarity=0.007 Sum_probs=148.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
+.+..+|.+.|-+.+|.+.++..++.. |-+.||..+-..|.+. .+++.|+.++.+-++. ++-++....-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRI-DQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 556667777777777777777666543 5556666666666666 6777777777666654 22244444455666666
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHH
Q 011463 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (485)
.++.++|.++|+...+.. +.++.....+...|.-.++++-|++.++.+.+.|+. ++..|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 677777777777766652 235555555566666677777777777777777643 666677777777777777777777
Q ss_pred HHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 284 LQMMISKRHRPN--IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 284 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
|+++...-..|+ ..+|-.+.......|++..|...|+-....+ ......++.+.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 777665533232 3455666666667777777777777666554 335566777766667777777777777766553
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=2.5e-08 Score=89.85 Aligned_cols=411 Identities=13% Similarity=0.120 Sum_probs=268.0
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC-CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKC-DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+..|...+..+.++|+.......|++.+..-+ .....+|...+......|-++.++.++++.++. ++..-+-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 44566667778899999999999998877642 224467888888888889999999999999874 5555788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCChH---HHHHHHHhhhhCCCCCC--HHhHHHH
Q 011463 129 ILVEENQLKLAFRFYRHMREIG------IQPCVASLNVLIKALCKNSGTMD---AAFKIFREMPNRGCTPD--SYTYGTL 197 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~l 197 (485)
.++..+++++|.+.+...+... .+.+...|..+...++++ .+.- ....+++.+..+ -+| ...|++|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~-p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN-PDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC-cchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 8999999999999998876421 234455666666665554 2221 233444444443 233 3578999
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC----------------------CHHHHHHHHHHHHhC
Q 011463 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK----------------------SVEEAMRLFEEMRSK 255 (485)
Q Consensus 198 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~ 255 (485)
...|.+.|.++.|..+|++....- .+..-|..+.++|+.-. +++-...-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 999999999999999999987652 24444555555554321 122233334443332
Q ss_pred CC-----------CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHH
Q 011463 256 GV-----------EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN------IVTYSTLLNGLCKEGKLQEAVEI 318 (485)
Q Consensus 256 ~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~ 318 (485)
+. +-+...|..-+ -...|+..+-...+.++... +.|. ...|..+...|-..|+.+.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 10 11222222222 22356677778888887765 2222 34577888899999999999999
Q ss_pred HHHHhHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccc----------chhhhHHHHHHHHhc
Q 011463 319 LDRMKLQGLKPD---AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS----------LHIRIHNTVVQGLCK 385 (485)
Q Consensus 319 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~ 385 (485)
|++..+...+.- ..+|..-...=.+..+++.|+++.++.....-.|....|. ....++...+...-.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 999987654322 2345555555667888999999988876532111111221 133444444444434
Q ss_pred C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHh---cCcHHH
Q 011463 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE-GTWSAVMTALWD---RRKMRQ 460 (485)
Q Consensus 386 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~ 460 (485)
. .++....+|+++.+..+. ++.......-.+-.+.-++++.+++++-+..=-.|.. ..|+..+.-+.+ .-+++.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4 778888899999988776 4444444444555667789999999887766223443 467776665543 247999
Q ss_pred HHHHHHHHHHcCC
Q 011463 461 AAELLLLELMNKC 473 (485)
Q Consensus 461 A~~~~~~~~~~~~ 473 (485)
|+.+|+++++..+
T Consensus 569 aRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 569 ARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999543
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-09 Score=93.05 Aligned_cols=271 Identities=14% Similarity=0.063 Sum_probs=119.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHH
Q 011463 45 GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124 (485)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 124 (485)
.++.|+.....+...+...|+.++|+..|+.....++. +..........+...|+.+....+...+.... ..+...|.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 44455555555555555555555555555555544332 22222233333344455555555555444321 12333344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (485)
.-+......++++.|+.+-++.++.+ |...--..+-..+..+.++.++|.-.|+...... +.+..+|.-|+.+|...
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 44444444555555555555555432 2222222221222222255555555555544431 12445555555555555
Q ss_pred CCHhHHHHHHHHHHHCCCCCChhhHHHHH-HH-HHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHcCCChHHHH
Q 011463 205 GKIYEAKELFKEMETKACSPTVVTYTSLI-NG-LCQSKSVEEAMRLFEEMRSKGVEPN-VFTYSSLMDGLCKGGCSSQAM 281 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~-~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 281 (485)
|.+.+|.-.-+...+. .+.+..+...+. .. +.....-++|.++++..... .|+ ....+.+...|...|..+.++
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence 5555554433332221 112233332221 11 11122234455555544433 222 223344444555555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
.+++..+.. .||....+.|.+.+...+.+.+|.+.|....+.
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 555554442 335555555555555555555555555554443
No 75
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=9.4e-10 Score=102.28 Aligned_cols=266 Identities=15% Similarity=0.203 Sum_probs=159.7
Q ss_pred cCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhh
Q 011463 43 ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122 (485)
Q Consensus 43 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 122 (485)
..|+.|+..+|..+|.-|+..|+.+.|- +|..|.....+.+...|+.++..+...++.+.+. .|.+.+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 5789999999999999999999999999 9999988888888999999999999999888776 588999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh-CCCCCCHHhHHHHHHHH
Q 011463 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN-RGCTPDSYTYGTLINGL 201 (485)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 201 (485)
|..+..+|...|+... ++..++ ....+...+... |.-.....++..+.- .+.-||... .+...
T Consensus 86 yt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~-Gvgs~e~~fl~k~~c~p~~lpda~n---~illl 149 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDH-GVGSPERWFLMKIHCCPHSLPDAEN---AILLL 149 (1088)
T ss_pred HHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhh-ccCcHHHHHHhhcccCcccchhHHH---HHHHH
Confidence 9999999999999765 222222 111122223333 443444444433221 122233222 22233
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHH
Q 011463 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK-SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280 (485)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 280 (485)
...|-++.+++++..+.-..... .+..+++-+.... .+++...+.....+ .|++.+|..++.+-...|+.+.|
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhH
Confidence 34455555555555443221110 0111122222222 12222222222221 35666666666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcC
Q 011463 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (485)
..++..|.+.|++.+..-|..|+-+ .++...++.+++.|.+.|+.|+..|+...+..+..+|
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 6666666666666666655555543 5666666666666666666666666666555555533
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=6.7e-10 Score=96.75 Aligned_cols=225 Identities=13% Similarity=0.018 Sum_probs=141.8
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (485)
....+..+.++..+.+++.............|..+...+...|++++|...|++.++..+. +...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCH
Confidence 4445666778888877773111111112455777778888888888888888888887765 678888888888888888
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHh
Q 011463 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181 (485)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 181 (485)
++|...|++..+.+ |.+..+|..+..++...|++++|.+.+++..+.. |+.............. ++.++|...+..
T Consensus 115 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~-~~~~~A~~~l~~ 190 (296)
T PRK11189 115 DAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESK-LDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 88888888888754 3356677778888888888888888888888754 5433222222222233 778888888866
Q ss_pred hhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC---C---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA---C---SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
..... .++...+ .......|+...+ +.+..+.+.. + +.....|..+...+.+.|++++|...|+...+.
T Consensus 191 ~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 54332 2222221 2223334555443 2444443210 0 012345667777777777777777777777765
Q ss_pred C
Q 011463 256 G 256 (485)
Q Consensus 256 ~ 256 (485)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=6e-10 Score=101.16 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=44.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CC--CC
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMRSK-----G--VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK----RH--RP 294 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~ 294 (485)
+++.|...|...|++++|.++++.+.+. + ..-....++.+...|.+.+.+.+|.++|.+.... |+ +.
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 4455555555555555555555544322 0 1111233444555555555555555555443221 11 11
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMK 323 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (485)
...+|..|...|.+.|+++.|.++.+.+.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23445555555555555555555555443
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=1.8e-09 Score=84.72 Aligned_cols=197 Identities=11% Similarity=-0.000 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
...+.-.|...|++..|..-++++++.++. +..+|..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 444455555666666666666666555544 45555555555556666666666666555543 3344555555555555
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHH
Q 011463 133 ENQLKLAFRFYRHMREIG-IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 211 (485)
.|++++|.+.|++....- ......++..+.-+..+. |+.+.|...|++..+.... ...+...+.....+.|++..|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 666666666665555431 111122333333333444 5666666666665555322 3344455555555666666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
..++.....+. ++..+.-..|+.-...|+.+.+.+.=.++..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555433 4555555555555555665555555444444
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-08 Score=90.16 Aligned_cols=415 Identities=12% Similarity=0.087 Sum_probs=232.6
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
.++....||++.|+..|..++ .--|+|...|+.-..+|+..|++++|++--.+..+..|. -...|.....++.-.
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai----~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAI----MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGL 83 (539)
T ss_pred HHhhcccccHHHHHHHHHHHH----ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhc
Confidence 356778999999999999999 344668899999999999999999999988888887654 456899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCCh
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL---AFRFYRHMREI---GIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
|++++|+..|.+-++.. +.+...+..+..++........ --.++..+... ........|..++..+-+...++
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999998874 4456677777777621110000 00011111100 00001112222222221110000
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHH-------HHHcCC--------Hh----HHHHHHHHHHH-CCCCCChhhHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLING-------LCRLGK--------IY----EAKELFKEMET-KACSPTVVTYTSL 232 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~--------~~----~a~~~~~~~~~-~~~~~~~~~~~~l 232 (485)
..= .. +.....++... ....|. +. .......++.+ .....-......+
T Consensus 163 ~~~-----------l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 163 KLY-----------LN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred hcc-----------cc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 000 00 11000000000 000000 00 00000000000 0000011224456
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHH-------HHHH
Q 011463 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST-------LLNG 305 (485)
Q Consensus 233 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~ 305 (485)
.++..+..+++.|++.+....... -+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhh
Confidence 666777778888888888877764 35555666677777777777777766666655432 2222222 3335
Q ss_pred HHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhc
Q 011463 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385 (485)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (485)
|.+.++++.++..|.+.......|+ ...+....+++....+...- +.|....- .- .-...+.+
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e-----~r-~kGne~Fk 370 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAY--INPEKAEE-----ER-EKGNEAFK 370 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHh--hChhHHHH-----HH-HHHHHHHh
Confidence 5556777888888877665432222 12223334444444443332 12322110 00 11222333
Q ss_pred C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCcHHHHHH
Q 011463 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD-EGTWSAVMTALWDRRKMRQAAE 463 (485)
Q Consensus 386 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 463 (485)
. ++..|+..|.++++..+. |...|....-+|.+.|.+..|++-.+..++. .|+ ...|..=+.++....++++|.+
T Consensus 371 ~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 788888888888877765 7778888888888888888888877777765 333 3334444555666677778888
Q ss_pred HHHHHHHcCCC
Q 011463 464 LLLLELMNKCV 474 (485)
Q Consensus 464 ~~~~~~~~~~~ 474 (485)
.|++.++.+..
T Consensus 448 ay~eale~dp~ 458 (539)
T KOG0548|consen 448 AYQEALELDPS 458 (539)
T ss_pred HHHHHHhcCch
Confidence 88777776643
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=9.1e-08 Score=88.22 Aligned_cols=404 Identities=13% Similarity=0.035 Sum_probs=260.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC-CHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI-TEDIFLSICR 93 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 93 (485)
+..+.-.+...|+++.+.+.||+.. ...--..+.|..+...+...|.-..|..+++........| +...+.....
T Consensus 326 ~d~Lt~al~~~g~f~~lae~fE~~~----~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 326 FDHLTFALSRCGQFEVLAEQFEQAL----PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 4556677889999999999999998 3444567789999999999999999999999887776444 3334444444
Q ss_pred HHh-ccCChhhHHHHHHHHHhc--CC--CCCHhhHHHHHHHHHH-----------cCCHHHHHHHHHHHHHcCC-CCCHH
Q 011463 94 GYG-RVHRPLDAMRVFDKMKEF--GC--EPTPKSYITVLAILVE-----------ENQLKLAFRFYRHMREIGI-QPCVA 156 (485)
Q Consensus 94 ~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~-~~~~~ 156 (485)
.|. +.+..+++++.-.++... +. ...+..|..+.-+|.. .....++.+.+++..+.+. .|+..
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 444 457778887777776652 11 1234455555555542 1235678888888887652 23332
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011463 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236 (485)
Q Consensus 157 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 236 (485)
.| .-+ .++.. ++++.|.+..++..+.+...+...|..|.-.+...+++.+|+.+.+...+.- ..|......-+..-
T Consensus 482 f~-lal-q~A~~-R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 482 FY-LAL-QYAEQ-RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred HH-HHH-HHHHH-HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 22 222 34455 8999999999999998667789999999999999999999999998766531 11111111122222
Q ss_pred HccCCHHHHHHHHHHHHhC-----CCCC---CHhhHHHHHHHHHcCCChHHHHHHHHHH-----------------HhCC
Q 011463 237 CQSKSVEEAMRLFEEMRSK-----GVEP---NVFTYSSLMDGLCKGGCSSQAMELLQMM-----------------ISKR 291 (485)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~-----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------~~~~ 291 (485)
...++.+++......+... ++.. .......-.......++..++.+....+ ....
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 3345666655544443221 0000 0000000000000011111111111111 1111
Q ss_pred CCC--C------hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011463 292 HRP--N------IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363 (485)
Q Consensus 292 ~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (485)
..| + ...|......+.+.++.++|...+.+..... +.....|......+...|..++|.+.|..... +.
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ld 714 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LD 714 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cC
Confidence 111 2 1234455667788899999988888777653 55677888888889999999999999999887 45
Q ss_pred CCcccccchhhhHHHHHHHHhcC-ChhHHHH--HHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 364 PNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ--VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
|+...- ..++...+... +..-|.. ++..+.+.++. +...|-.+...+-+.|+.+.|.+.|....+.
T Consensus 715 P~hv~s------~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 715 PDHVPS------MTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCcHH------HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 664322 22566666655 5555555 99999998877 8999999999999999999999999998875
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=2.1e-09 Score=97.77 Aligned_cols=246 Identities=17% Similarity=0.102 Sum_probs=163.9
Q ss_pred CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC-----CC-CCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-
Q 011463 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK-----AC-SPTV-VTYTSLINGLCQSKSVEEAMRLFEEMRSK-----G- 256 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~- 256 (485)
-..+...+...|...|+++.|+.+++..... |. .|.. ...+.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456667899999999999999999887653 21 1222 23344667888889999999998887643 2
Q ss_pred -CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC-----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC--
Q 011463 257 -VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-----RH-RPN-IVTYSTLLNGLCKEGKLQEAVEILDRMKLQG-- 326 (485)
Q Consensus 257 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 326 (485)
.+.-..+++.|..+|.+.|++++|..+++.+.+. +. .|. ...++.+...|...+++++|..+++...+.-
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1112355677777889999999888888776542 11 112 2234556667778888888888887654321
Q ss_pred -CCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011463 327 -LKP----DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401 (485)
Q Consensus 327 -~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 401 (485)
+.+ -..+++.+...|...|++++|.++++++....-.- ...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~----------------------------------~~~ 403 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL----------------------------------LGK 403 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc----------------------------------ccC
Confidence 111 23578888888888888888888888876421000 000
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011463 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD----G--CLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469 (485)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 469 (485)
...-....++.+...|.+.+.+.+|.++|.+...- | .+-...+|..|...|.+.|+++.|.++.++++
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 00112345677778888888888888887775432 2 11223467778888889999999998888876
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=4.1e-09 Score=82.70 Aligned_cols=200 Identities=15% Similarity=0.047 Sum_probs=137.9
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 165 (485)
.+...+.-.|...|++..|..-+++.++.+ |.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|..-..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 345566667777788888887777777764 4456677777777777788888888887777754 22345666666667
Q ss_pred HhcCCChHHHHHHHHhhhhCC-CCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 011463 166 CKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244 (485)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 244 (485)
|.. |.+++|...|++....- ...-..+|..+.-+..+.|+++.|.+.|++..+.... ...+...+.....+.|++..
T Consensus 114 C~q-g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQ-GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhC-CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 776 77888887777777652 1223456777777777778888888777777765322 34556666777777777777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
|...++.....+. ++..+....|+.-...|+-+.+.++=.++...
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777776653 67777777777777777777777766666554
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.29 E-value=2.2e-09 Score=93.56 Aligned_cols=194 Identities=15% Similarity=-0.017 Sum_probs=144.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+.....++...|++++|+..|++++ ...|.++..|..+...+...|++++|.+.|+++++..+. +..++..+..+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al----~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQAL----ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 5566778899999999999999999 344667899999999999999999999999999998766 67788889999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 174 (485)
+...|++++|++.|++..+.+ |+..........+...++.++|...+.+..... .|+...+ .+... .. |+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~l-g~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YL-GKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--Hc-cCCCH
Confidence 999999999999999998864 443322222333456788999999997765432 2333222 22222 22 55544
Q ss_pred HHHHHHhhhh---CCC---CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 011463 175 AFKIFREMPN---RGC---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221 (485)
Q Consensus 175 a~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (485)
+ ..++.+.+ ..+ +.....|..+...+.+.|++++|...|++.....
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 24444432 111 1134678999999999999999999999998764
No 84
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.4e-11 Score=74.76 Aligned_cols=50 Identities=28% Similarity=0.592 Sum_probs=48.2
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (485)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=1.2e-07 Score=86.16 Aligned_cols=306 Identities=12% Similarity=-0.001 Sum_probs=167.2
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC-CCH-HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITE-DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
.+..|..+...+...|+.+.+.+.+.......+. ++. .........+...|++++|.+.+++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 3556666666677777777766666665554332 121 222223344556778888888887777653 334434332
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHH
Q 011463 127 LAILVE----ENQLKLAFRFYRHMREIGIQPCVASLN-VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201 (485)
Q Consensus 127 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (485)
...+.. .+....+.+.+.. .....|+..... .+...+... |++++|...+++..+.... +...+..+..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~-G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA-GQYDRAEEAARRALELNPD-DAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 222222 3444444444443 111223333222 333344444 8888888888888776433 556677777788
Q ss_pred HHcCCHhHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHhhH-H--HHHHHHHcC
Q 011463 202 CRLGKIYEAKELFKEMETKACS-PTV--VTYTSLINGLCQSKSVEEAMRLFEEMRSKGV-EPNVFTY-S--SLMDGLCKG 274 (485)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~ 274 (485)
...|++++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 8888888888888877664221 222 2344566777888888888888888754322 1111111 1 223333334
Q ss_pred CChHHHHHH--H-HHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC------C--CHHhHHHHHHHHH
Q 011463 275 GCSSQAMEL--L-QMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK------P--DAGLYGKIISCFC 342 (485)
Q Consensus 275 ~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~ 342 (485)
|....+.++ + ........ ............++...|+.+.|..++..+...... . ..........++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 433333333 2 11111100 111122224566677889999999999887653211 0 1112222233456
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 011463 343 DIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~ 360 (485)
..|++++|.+.+.+....
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 889999999999888753
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.25 E-value=3e-07 Score=76.73 Aligned_cols=299 Identities=11% Similarity=0.063 Sum_probs=220.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH-HHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE-DIFLSICRG 94 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 94 (485)
..+...+...|++.+|+.-|..++ .+.|.+-.++..-...|...|+...|+.-+.++++..+ |- ..-..-...
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAv----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp--DF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAV----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP--DFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc--cHHHHHHHhchh
Confidence 346677888999999999999999 56566666777778899999999999999999998754 33 233445567
Q ss_pred HhccCChhhHHHHHHHHHhcCCCC--CHhh----------H--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEP--TPKS----------Y--ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~----------~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+.+.|.++.|..-|+.++...... .... | ...+..+...|+...|++....+++.. +.+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 889999999999999998764211 1111 1 223445667889999999999999854 356666666
Q ss_pred HHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhh----HHHH----
Q 011463 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT----YTSL---- 232 (485)
Q Consensus 161 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---- 232 (485)
-..+|... |++..|+.-++...+..-. +..++..+-..+...|+.+.++...++.++. .||... |..+
T Consensus 195 Rakc~i~~-~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAE-GEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhc-CcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 77777777 9999999888887776433 6667777888899999999999999998875 444322 2111
Q ss_pred -----HHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 233 -----INGLCQSKSVEEAMRLFEEMRSKGVEPNVF---TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304 (485)
Q Consensus 233 -----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (485)
+....+.++|.+++.-.+...+........ .+..+-.++...|++.+|++.-.+++... +.|+.++.--..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence 223445677888888888877764332222 34456667778899999999999988763 225788888888
Q ss_pred HHHhcCCHHHHHHHHHHHhHCC
Q 011463 305 GLCKEGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~ 326 (485)
+|.-...++.|+.-|+...+.+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC
Confidence 8988889999999998888764
No 87
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=3e-11 Score=73.36 Aligned_cols=47 Identities=47% Similarity=1.006 Sum_probs=20.2
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011463 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271 (485)
Q Consensus 225 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (485)
|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.24 E-value=7.8e-07 Score=78.91 Aligned_cols=416 Identities=11% Similarity=0.090 Sum_probs=240.9
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 44 NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
+..|.|..+|+.+++-+-.+ ..+++.+.++++...-+. ++..|..-+..-.+.++++....+|.+.+.. ..+...|
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~-s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW 89 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS-SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLW 89 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHH
Confidence 35577888888888876555 888888999888877554 6778888888888888999999999887764 3467777
Q ss_pred HHHHHHHHH-cCCHHH----HHHHHHHHH-HcCCCCCH-HHHHHHHHHHH---------hcCCChHHHHHHHHhhhhCCC
Q 011463 124 ITVLAILVE-ENQLKL----AFRFYRHMR-EIGIQPCV-ASLNVLIKALC---------KNSGTMDAAFKIFREMPNRGC 187 (485)
Q Consensus 124 ~~l~~~~~~-~~~~~~----a~~~~~~~~-~~~~~~~~-~~~~~ll~~~~---------~~~~~~~~a~~~~~~~~~~~~ 187 (485)
...+.--.+ .++... ..+.|+-.. +.|+.+-. ..|+..+..+- .+ .+++...++++++...-+
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~-QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN-QRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH-HHHHHHHHHHHHHhcCcc
Confidence 766653332 233333 233333333 34543322 23444443321 22 345556666777665422
Q ss_pred CCCHHhHHHHHHH-------------HHHcCCHhHHHHHHHHHHHC--CCCCChhh---------------HHHHHHHHH
Q 011463 188 TPDSYTYGTLING-------------LCRLGKIYEAKELFKEMETK--ACSPTVVT---------------YTSLINGLC 237 (485)
Q Consensus 188 ~~~~~~~~~l~~~-------------~~~~~~~~~a~~~~~~~~~~--~~~~~~~~---------------~~~ll~~~~ 237 (485)
.-=...|+-.... --+...+-.|.++++++... |......+ |..+|..=.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 2112233322110 01222355566666665421 22111111 222222111
Q ss_pred ccC------C--HHHHHHHHHHHH-hCCCCCCHhhHH-----HHHHHHHcCCC-------hHHHHHHHHHHHhCCCCCCh
Q 011463 238 QSK------S--VEEAMRLFEEMR-SKGVEPNVFTYS-----SLMDGLCKGGC-------SSQAMELLQMMISKRHRPNI 296 (485)
Q Consensus 238 ~~~------~--~~~a~~~~~~~~-~~~~~~~~~~~~-----~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 296 (485)
..+ . -....-.+++.. -.+..|+..... ...+.+...|+ -+++..+++..+..-..-+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 0 011111222221 112233221110 11112223333 34555566655544222233
Q ss_pred hhHHHHHHHHHhcC---CHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchh
Q 011463 297 VTYSTLLNGLCKEG---KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373 (485)
Q Consensus 297 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 373 (485)
.+|..+...--..- ..+....+++++...-..--.-+|...+..-.+..-...|..+|.++.+.+..+- ++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h------hV 402 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH------HV 402 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc------hh
Confidence 34433333211111 2555566666665542222234677788888888889999999999988765551 23
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHH
Q 011463 374 RIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD--EGTWSAVMTA 451 (485)
Q Consensus 374 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~ 451 (485)
-+.++++..+|..+.+-|.++|+--.+.-.+ ++......++-+...|+-..+..+|++....++.|+ ...|..++.-
T Consensus 403 fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 403 FVAAALMEYYCSKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 3556999999999999999999988765433 556667788888999999999999999998866655 4689999988
Q ss_pred HHhcCcHHHHHHHHHHHHHc
Q 011463 452 LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~ 471 (485)
=..-|+...++++-++....
T Consensus 482 ES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhcccHHHHHHHHHHHHHh
Confidence 88999999999888877653
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=3.4e-08 Score=80.62 Aligned_cols=390 Identities=15% Similarity=0.087 Sum_probs=243.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH-HHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS-ICR 93 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 93 (485)
+..++..+.+..++.+|++++..-. +..+.+....+.+..+|....++..|-+.++++....| ....|.. -.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~----Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSEL----ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH----hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHH
Confidence 4566777889999999999998777 34455788899999999999999999999999987643 3333332 234
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA--ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
.+-+.+.+..|+.+...|... ++...-..-+. .....+++..+..++++....| +..+.+.......+. |+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke-gq 159 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE-GQ 159 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc-cc
Confidence 566789999999999888753 22222222222 2335788888888888776433 344444444455676 99
Q ss_pred hHHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-------------Chh----------
Q 011463 172 MDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP-------------TVV---------- 227 (485)
Q Consensus 172 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~---------- 227 (485)
++.|.+-|+...+- |.. ....|+ +.-++.+.+++..|++...++.++|++. |..
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 99999999998886 444 445665 4456678899999999999998876432 111
Q ss_pred -----hHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHH
Q 011463 228 -----TYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301 (485)
Q Consensus 228 -----~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (485)
.+|.-...+.+.++++.|.+.+-+|.-+ ....|+.|...+.-. --.+++.+..+-++-++..++- ...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHH
Confidence 1233333466788999998888877532 235577777665432 2245566777777777776553 5678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHCCC-CCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHH
Q 011463 302 LLNGLCKEGKLQEAVEILDRMKLQGL-KPDAGLYGKIISCFC-DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379 (485)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (485)
++-.|++..-++.|-+++.+-...-. -.+...|+ ++.++. ..-..+++.+-++.+...-. + ... ...
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~--~--kLR------klA 384 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLT--E--KLR------KLA 384 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHH--H--HHH------HHH
Confidence 99999999999999888765322110 11233333 333333 33456666665555432100 0 000 011
Q ss_pred HHHHh-cC-----ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 380 VQGLC-KT-----DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 380 ~~~~~-~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
+..-. +. ....+++-|++..+. -..+...-.+.|.+..++..+.++|+.-.+-
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 11111 11 122233333333332 1112233345566788999999999887654
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=1.4e-07 Score=85.71 Aligned_cols=309 Identities=13% Similarity=-0.018 Sum_probs=188.5
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
....+..+...+...|+.+.+.+.+........... ............+...|++++|.+.++++.+..|. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA-TERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 344566667777778889998888888774322121 12233334455678899999999999999988654 4444442
Q ss_pred HHHHHh----ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011463 91 ICRGYG----RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166 (485)
Q Consensus 91 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 166 (485)
...+. ..+....+.+.+..... ..+........+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 22222 24555555555554211 112233445566678889999999999999999865 233455666666777
Q ss_pred hcCCChHHHHHHHHhhhhCCC-CCCH--HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCChhhH-H--HHHHHHHcc
Q 011463 167 KNSGTMDAAFKIFREMPNRGC-TPDS--YTYGTLINGLCRLGKIYEAKELFKEMETKAC-SPTVVTY-T--SLINGLCQS 239 (485)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~ll~~~~~~ 239 (485)
.. |++++|...+++..+... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 160 ~~-g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 160 MQ-GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred Hc-CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 76 999999999999887632 1222 3455788899999999999999999864322 1111111 1 223333333
Q ss_pred CCHHHHHHH---HHHHHhCCC-CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC---CC---hhhHHHH--HHHHH
Q 011463 240 KSVEEAMRL---FEEMRSKGV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR---PN---IVTYSTL--LNGLC 307 (485)
Q Consensus 240 ~~~~~a~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~---~~~~~~l--~~~~~ 307 (485)
|....+.+. ......... ............++...|+.+.|..+++.+...... -. ..+-..+ .-++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 432222222 111111100 111122234666778899999999999988664221 01 1112222 23456
Q ss_pred hcCCHHHHHHHHHHHhHC
Q 011463 308 KEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~ 325 (485)
..|+.++|...+......
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 889999999999887653
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.5e-06 Score=78.08 Aligned_cols=392 Identities=13% Similarity=0.123 Sum_probs=223.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC
Q 011463 55 LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134 (485)
Q Consensus 55 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (485)
.=+..+...|++++|.....+++..+++ +...+..-+-+..+.+++++|+.+.+.-... ..+..-+.--..+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 3356678899999999999999998865 7788888888999999999999666543321 111111123344556899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCC-CHHhHHHHHHHHHHcCCHhHHHHH
Q 011463 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP-DSYTYGTLINGLCRLGKIYEAKEL 213 (485)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 213 (485)
..++|+..++-+.. .+..+...-...+++. |++++|.++|+.+.+.+... +...-..++.+-. -..+. +
T Consensus 94 k~Dealk~~~~~~~----~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR----LDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-L 163 (652)
T ss_pred cHHHHHHHHhcccc----cchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-H
Confidence 99999999882221 2334666666777888 99999999999998875331 2222222222111 11111 2
Q ss_pred HHHHHHCCCCCChhhHHH---HHHHHHccCCHHHHHHHHHHHHhC-------CCCC------CHh-hHHHHHHHHHcCCC
Q 011463 214 FKEMETKACSPTVVTYTS---LINGLCQSKSVEEAMRLFEEMRSK-------GVEP------NVF-TYSSLMDGLCKGGC 276 (485)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~------~~~-~~~~l~~~~~~~~~ 276 (485)
.+... ..| ..+|.. ..-.+...|++.+|+++++...+. +-.. ... .-..+.-++...|+
T Consensus 164 ~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 164 LQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 122 223333 344566789999999999988321 1010 111 12234556678999
Q ss_pred hHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHhcCCH-----------------HHHHHHH----------------
Q 011463 277 SSQAMELLQMMISKRHRPNIVTY----STLLNGLCKEGKL-----------------QEAVEIL---------------- 319 (485)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~-----------------~~a~~~~---------------- 319 (485)
..+|..++...++.... |.... |.++. ...-.++ +....-+
T Consensus 240 t~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA-DEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhcCC-CchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887543 32211 11111 1110000 0000000
Q ss_pred ---------HHHhHC--CCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC
Q 011463 320 ---------DRMKLQ--GLKPDAGLYGKIISCFC--DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386 (485)
Q Consensus 320 ---------~~~~~~--~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (485)
++.... +..|. ..+..++.... +......+..++...-+. .|+.... +.-..+......
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~-----v~L~~aQl~is~ 389 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKV-----VLLLRAQLKISQ 389 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHH-----HHHHHHHHHHhc
Confidence 000000 11121 22333333222 222456666666666543 2333111 111444444555
Q ss_pred -ChhHHHHHHH--------HHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCh----hhHHHHHHH
Q 011463 387 -DPNRAFQVYL--------SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD--GCLPDE----GTWSAVMTA 451 (485)
Q Consensus 387 -~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~----~~~~~l~~~ 451 (485)
+++.|.+++. .+.+.+. .+.+...+...+.+.++.+.|..++.+.+.. .-.+.. .++..++..
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 9999999998 5554443 3455666777788888877777777776643 111222 233334444
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 452 LWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
-.+.|+-++|...++++.+.+..+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhCCch
Confidence 457799999999999999965433
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=2.2e-06 Score=71.72 Aligned_cols=359 Identities=12% Similarity=0.098 Sum_probs=244.8
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHh-hHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK-SYIT 125 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 125 (485)
+.++.-...+...+...|++..|+.-|..+.+.++. +-.++..-...|...|+-..|+.-+.+.++. +||-. +-..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 345666778889999999999999999999987544 3444445567899999999999999999885 56643 3344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----------------HHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCC
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVA----------------SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (485)
-...+.++|.+++|..-|+..+... |+.. .....+..+... |+...|+.....+++.. +.
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~-GD~~~ai~~i~~llEi~-~W 187 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGS-GDCQNAIEMITHLLEIQ-PW 187 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHhcC-cc
Confidence 4567889999999999999998865 3211 122233444455 89999999999998874 34
Q ss_pred CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhH----H
Q 011463 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY----S 265 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~ 265 (485)
+...+..-..+|...|++..|+.=++...+... .+...+-.+-..+...|+.+.++...++..+. .||.... .
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 888888889999999999999888877766533 35566667777888889999999888888875 4554321 1
Q ss_pred HH---------HHHHHcCCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHh
Q 011463 266 SL---------MDGLCKGGCSSQAMELLQMMISKRHRPNI---VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333 (485)
Q Consensus 266 ~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (485)
.+ +......+++.++++-.+...+..+.... ..+..+-.++...+++.+|+....+..+.. +.|..+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHH
Confidence 11 12233466777777777777766443222 234445556677788889988888887753 344778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 413 (485)
+..-..+|.-...++.|+.-|+...+.+ ++.... +...+.|.++.+...++ | .|-.|
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n--~sn~~~---------------reGle~Akrlkkqs~kR----D--YYKIL 400 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELN--ESNTRA---------------REGLERAKRLKKQSGKR----D--YYKIL 400 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcC--cccHHH---------------HHHHHHHHHHHHHhccc----h--HHHHh
Confidence 8888888888888999999988887743 322110 11234444443333322 1 22222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 011463 414 ITCFCKKGDIHKSARIVDELVLDGCLPDE 442 (485)
Q Consensus 414 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 442 (485)
+--++-.-.+..+.|++|... ..||.
T Consensus 401 --GVkRnAsKqEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 401 --GVKRNASKQEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred --hhcccccHHHHHHHHHHHHHh-cCCcc
Confidence 223444556777777777765 45653
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=4.4e-07 Score=84.41 Aligned_cols=229 Identities=14% Similarity=0.128 Sum_probs=139.5
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC---------CCCCHHHHHHHH
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK---------CDITEDIFLSIC 92 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~ 92 (485)
|...|+.+.|.+..+.+. +...|..+.+.|.+.++++-|.-.+..|.... ..++ +.-....
T Consensus 738 yvtiG~MD~AfksI~~Ik---------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvA 807 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK---------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVA 807 (1416)
T ss_pred EEEeccHHHHHHHHHHHh---------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHH
Confidence 456789999988887776 45679999999999988888777665554321 1121 2222333
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
......|..++|+.+|++-+. |..+=..|-..|.+++|.++-+.--+..++ .||......+-.. ++.
T Consensus 808 vLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear-~Di 874 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEAR-RDI 874 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhh-ccH
Confidence 344567889999999988765 334555677789999998887654443332 2343344333333 788
Q ss_pred HHHHHHHHhhhhCC-------------------CCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 011463 173 DAAFKIFREMPNRG-------------------CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233 (485)
Q Consensus 173 ~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 233 (485)
+.|++.|++.-... -..|...|.-....+-..|+.+.|+.+|..... |-.++
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~V 945 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMV 945 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhe
Confidence 88888776542210 112334444455555566777777777776543 33444
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 011463 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
+..+-.|+.++|-++-++-. |......+.+.|...|++.+|..+|.++.
T Consensus 946 rI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44555566666655544321 34444456666666677777666666553
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=1.6e-06 Score=89.20 Aligned_cols=339 Identities=12% Similarity=0.034 Sum_probs=206.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCC------CCC--HHhHHHHH
Q 011463 129 ILVEENQLKLAFRFYRHMREIG--IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC------TPD--SYTYGTLI 198 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~ 198 (485)
.....|++..+..++..+.... -.|.. .......+... |+++++...+......-. .+. ......+.
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l--~~~~a~~~~~~-g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRL--VLLQAWLAQSQ-HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcch--HHHHHHHHHHC-CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 3445677777666666542111 11222 22222333444 899999999887754310 111 12223344
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHH
Q 011463 199 NGLCRLGKIYEAKELFKEMETKACSPTV----VTYTSLINGLCQSKSVEEAMRLFEEMRSK----GV-EPNVFTYSSLMD 269 (485)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 269 (485)
..+...|++++|...+++........+. ...+.+...+...|++++|...+++.... +. .....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 5567899999999999987763111121 23455666778899999999999887643 11 111234556677
Q ss_pred HHHcCCChHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC--CCC--CHHhHHHHH
Q 011463 270 GLCKGGCSSQAMELLQMMISK----RHR--P-NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG--LKP--DAGLYGKII 338 (485)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~ 338 (485)
.+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999998887653 211 1 12234455566777899999999988875431 111 233445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-cccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccc---hhhHHHH
Q 011463 339 SCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD---SLTYSSL 413 (485)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~---~~~~~~l 413 (485)
..+...|++++|...+.+......... ...+. ..........+... +.+.|.+.+........... ...+..+
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWI--ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh--hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 778889999999999988865311111 11110 00000111222223 77888888766554221111 1113466
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 414 ITCFCKKGDIHKSARIVDELVLD----GCLPD-EGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 414 ~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
..++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.++++..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888999999999999988754 32222 2345566778889999999999999998865
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=8.7e-09 Score=88.37 Aligned_cols=249 Identities=14% Similarity=0.062 Sum_probs=94.7
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
+-..-.|+++.++.-.+ .. ....+.+......+.+++...|+++.++ .++.... .|.......+...+...+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~---~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LK---SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CH---TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTST
T ss_pred HHHHHhhhHHHHHHHhh-cc---CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCcc
Confidence 33444566666665555 22 1111122334444556666666544322 2222222 334444433333333323
Q ss_pred ChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 100 RPLDAMRVFDKMKEFGCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
+-+.++.-++........+ +..........+...|++++|++++... .+.......+..+.+. ++++.|.+.
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~-~R~dlA~k~ 153 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKM-NRPDLAEKE 153 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHT-T-HHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHc-CCHHHHHHH
Confidence 3344444333332221111 1111111222333345555555444321 2233333444444444 555555555
Q ss_pred HHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 179 FREMPNRGCTPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
++.|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|..++.+..+
T Consensus 154 l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55554431 11 122222222211 12345555555554332 233444444444445555555555555444443
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCh-HHHHHHHHHHH
Q 011463 255 KGVEPNVFTYSSLMDGLCKGGCS-SQAMELLQMMI 288 (485)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 288 (485)
.+ +-++.++..++-+....|+. +.+.+++.++.
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 32 22333444444444444444 33344444443
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=6.5e-09 Score=89.14 Aligned_cols=230 Identities=13% Similarity=0.145 Sum_probs=122.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHH
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR-PNIVTYSTLLNGLC 307 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 307 (485)
...+.+++...|+++.++ .++.... .|.......+...+...++-+.+..-++........ .+..........+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 334455555556554332 2222222 444444444444443333334444433333222222 12222222223445
Q ss_pred hcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-
Q 011463 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT- 386 (485)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 386 (485)
..|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .| .+.. .+..+.+......
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~---qLa~awv~l~~g~e 181 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILT---QLAEAWVNLATGGE 181 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHH---HHHHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHH---HHHHHHHHHHhCch
Confidence 567777776666432 245556666677777777777777777776532 22 2221 2222333333333
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcH-HHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM-RQAAELL 465 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 465 (485)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++..+.+ +-+..++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 677888888887664 34477778888888888888888888888877653 33555666677777777777 5566777
Q ss_pred HHHHHcCCCcc
Q 011463 466 LLELMNKCVEA 476 (485)
Q Consensus 466 ~~~~~~~~~~~ 476 (485)
.++....+..+
T Consensus 260 ~qL~~~~p~h~ 270 (290)
T PF04733_consen 260 SQLKQSNPNHP 270 (290)
T ss_dssp HHCHHHTTTSH
T ss_pred HHHHHhCCCCh
Confidence 77666554443
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=2.6e-06 Score=87.77 Aligned_cols=337 Identities=10% Similarity=-0.010 Sum_probs=156.3
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCCH-HHHHHHHH-HHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI------QPCV-ASLNVLIK-ALC 166 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~-~~~~~ll~-~~~ 166 (485)
....|++..+..+++.+.......++.........+...|+++++..++......-- .+.. .....+.. .+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344556665555555542211111222223333444556666666666665543210 0111 11111111 222
Q ss_pred hcCCChHHHHHHHHhhhhCCCCCC----HHhHHHHHHHHHHcCCHhHHHHHHHHHHHC----CC-CCChhhHHHHHHHHH
Q 011463 167 KNSGTMDAAFKIFREMPNRGCTPD----SYTYGTLINGLCRLGKIYEAKELFKEMETK----AC-SPTVVTYTSLINGLC 237 (485)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~ 237 (485)
.. |+++.|...++...+.-...+ ....+.+...+...|++++|...+.+.... +. .....++..+...+.
T Consensus 464 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 ND-GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hC-CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 33 666776666666554211111 123344555566667777766666665432 10 011223444555566
Q ss_pred ccCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCC--ChhhHHHHHHHH
Q 011463 238 QSKSVEEAMRLFEEMRSK----GVE--P-NVFTYSSLMDGLCKGGCSSQAMELLQMMISKR--HRP--NIVTYSTLLNGL 306 (485)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 306 (485)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 667777776666654431 111 1 12233344445555677777766666654421 111 122333344555
Q ss_pred HhcCCHHHHHHHHHHHhHCC--CCCCHH--hH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHH
Q 011463 307 CKEGKLQEAVEILDRMKLQG--LKPDAG--LY--GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 380 (485)
...|+++.|...+....... ...... .. ...+..+...|+.+.|..++........ ... +. .......+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~--~~~-~~-~~~~~~~~a 698 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF--ANN-HF-LQGQWRNIA 698 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC--ccc-hh-HHHHHHHHH
Confidence 66677777766666653310 000000 00 1112334446666666666655433111 111 10 111111333
Q ss_pred HHHhcC-ChhHHHHHHHHHHhC----CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 381 QGLCKT-DPNRAFQVYLSMRNR----SISV-DSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 381 ~~~~~~-~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
..+... ++++|...+++.... +..+ ...+...+..++...|+.++|...+.++.+.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444 666666666665432 2111 1234555666777788888888888877765
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=6.1e-08 Score=86.45 Aligned_cols=97 Identities=16% Similarity=0.088 Sum_probs=52.4
Q ss_pred CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHH
Q 011463 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN-VFTYSSL 267 (485)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 267 (485)
+|+.....|.-.|.-.|++++|.+.|+..+... +.|...||.|...++...+..+|+..|.+..+. .|. +.+...|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh
Confidence 455555555555555666666666666655542 224555666666666666666666666666554 222 2233334
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 011463 268 MDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~ 288 (485)
.-.|...|.+++|.+.|-.++
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 445556666666665555543
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.01 E-value=3.9e-06 Score=80.00 Aligned_cols=421 Identities=11% Similarity=0.063 Sum_probs=217.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC-CCHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFLSIC 92 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 92 (485)
.+..|.+.|+...|..+|.+.|+.+- +--+.+..........|++..+++.|..+.-...+..+. .-...|....
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAF----eLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAF----ELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 34567777777778888888888777 233456667777788888888888888774444333211 1123344455
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCC
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL-CKNSGT 171 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~ 171 (485)
-.|.+.++...|+.-|+...+.+ |.|...|..+..+|.+.|++..|.+.|.+.... .|+...-....... +.. |.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~-Gk 645 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDN-GK 645 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHh-hh
Confidence 66777788888888888877654 446778888888888888888888888887763 35443222222222 233 78
Q ss_pred hHHHHHHHHhhhhCC------CCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHc
Q 011463 172 MDAAFKIFREMPNRG------CTPDSYTYGTLINGLCRLGKIYEAKELFKEMET-------KACSPTVVTYTSLINGLCQ 238 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~ 238 (485)
+.++...+..+...- ..--..++-.+...+.-.|-..++..++++-.+ .....+...|..+-.+|
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac-- 723 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC-- 723 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH--
Confidence 888887777765431 111122333333333333433444444443322 11111222222222222
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCh---H---HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----
Q 011463 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS---S---QAMELLQMMISKRHRPNIVTYSTLLNGLCK---- 308 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 308 (485)
.+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-++ ...++.+|..++..|.+
T Consensus 724 --------~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 724 --------YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred --------HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHH
Confidence 2222221 11 11221111111111111111 1 11111111111 11123344444443332
Q ss_pred c----CCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHh
Q 011463 309 E----GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384 (485)
Q Consensus 309 ~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (485)
. .+...|...+...++.. ..+..+|+.|.-. ...|++.-+.-.|-+-.... +.+..+|. .+...+.
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~-------NlgvL~l 861 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWL-------NLGVLVL 861 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhhee-------ccceeEE
Confidence 1 12235666666655442 2345556655543 55566666666655544432 22333443 3444444
Q ss_pred cC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCChhhHHHHHHHHHhcCcHH
Q 011463 385 KT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL--V--LDGCLPDEGTWSAVMTALWDRRKMR 459 (485)
Q Consensus 385 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~--~~~~~p~~~~~~~l~~~~~~~g~~~ 459 (485)
.. +++-|...|.+.....|. +...|-.....-...|+.-++..+|..- . ..|-.|+...|.........+|+.+
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 55 778888888877776554 6666665555555667777777777652 1 1233456566655555566667666
Q ss_pred HHHHHHHH
Q 011463 460 QAAELLLL 467 (485)
Q Consensus 460 ~A~~~~~~ 467 (485)
+-+...++
T Consensus 941 ~~I~t~~k 948 (1238)
T KOG1127|consen 941 ESINTARK 948 (1238)
T ss_pred HHHHHhhh
Confidence 65554443
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.4e-07 Score=84.32 Aligned_cols=143 Identities=14% Similarity=0.076 Sum_probs=107.1
Q ss_pred HHHHHHHH-HHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 011463 210 AKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 210 a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
..++|-++ ...+..+|......|.-.|.-.|++++|...|+.+.... +-|...||.|...++...+.++|+.-|.+++
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 34444444 444545678888888899999999999999999999874 4578889999999999999999999999999
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC---------CCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 011463 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ---------GLKPDAGLYGKIISCFCDIGKYQEAANFL 354 (485)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (485)
+..+. =+.+...|.-+|...|.+++|.+.|-..+.. +..++...|..|=.++...++.|.+.+..
T Consensus 492 qLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 492 QLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 87433 2445556777899999999999988765432 11234567777767777777777555443
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=3.8e-05 Score=73.74 Aligned_cols=322 Identities=16% Similarity=0.250 Sum_probs=214.2
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD--ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT 125 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 125 (485)
.|++..+..+.++...+-+.+.+++++++.-.+.. -+...-+.|+-... .-+.....+..+++-.-+ .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh------
Confidence 35666777788888888888999999888654311 12233344443333 345566666666665432 122
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
+...+...+-+++|+.+|++.- .+....+.++.. -++.+.|.++-++.. .+..|+.+..+-.+.|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~----i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN----IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH----hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcC
Confidence 3345566777889999888753 455566666654 377788887766654 4578999999999999
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHH
Q 011463 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285 (485)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (485)
...+|++-|-+. .|+..|..++....+.|.+++..+.+...++...+|... +.++-+|++.++..+..+++.
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc
Confidence 999998877654 377789999999999999999999998887776566554 478889999998877655542
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011463 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 365 (485)
.|+......+.+-|...|.++.|.-++.. ...|..+...+...|++..|...-++. .+
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 35777777888888888888888777653 345777777788888888877665544 33
Q ss_pred cccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 366 RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434 (485)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 434 (485)
..+|. .+..+|... .+. +.+|...++-....-...++.-|-..|-+++.+.+++...
T Consensus 1249 ~ktWK-------~VcfaCvd~~EFr-----lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1249 TKTWK-------EVCFACVDKEEFR-----LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhHHH-------HHHHHHhchhhhh-----HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 44554 333333332 111 2233333333344445566666666666666666665543
No 102
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=1.7e-06 Score=75.41 Aligned_cols=209 Identities=11% Similarity=0.062 Sum_probs=102.8
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcC-CcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN-QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
.++...++.++|+.+++.++ ...|.+..+|.....++...| +++++++.++.+...+++ +..+|+.....+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI----~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 45 AVYASDERSPRALDLTADVI----RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHH----HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 34455556666666666666 222334445555555555555 456666666666666554 445555554444444
Q ss_pred CCh--hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCC---
Q 011463 99 HRP--LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN--SGT--- 171 (485)
Q Consensus 99 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~--- 171 (485)
|+. ++++..++++.+.+ +-+..+|....-++...|+++++++.++++++.+. -+...|+.....+... .|.
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 442 45566666665544 33555666666666666666666666666666542 2333333333222211 011
Q ss_pred -hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc----CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011463 172 -MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL----GKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237 (485)
Q Consensus 172 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 237 (485)
.+....+..++....+. +...|+.+...+... +...+|.+.+.+....+ +.+......|+..|+
T Consensus 198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 13344444444443222 445555555554442 22234445444443322 123344444444444
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.91 E-value=1.9e-05 Score=73.09 Aligned_cols=102 Identities=23% Similarity=0.314 Sum_probs=49.8
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
..|.+|+.+++.+.... .-...|..+...|+..|+++.|.++|.+.- .++-.+..|.+.|+|+.|.++-
T Consensus 746 kew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 55566666665555442 122344555555666666666666555431 1334455566666666665555
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHH
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (485)
++... .+.....|-+-..-.-+.|++.+|.+++
T Consensus 815 ~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 815 EECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 44432 2223333433333344444444444444
No 104
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=4.8e-06 Score=72.64 Aligned_cols=214 Identities=12% Similarity=0.060 Sum_probs=137.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH-RPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
+..+-..+...++.++|+.+.+.++..++. +..+|+....++...| ++++++..++++.+.+ +.+..+|+....++.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 334444455677888999999999888766 6677777777777777 5788999998888765 445566776665565
Q ss_pred HcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc---CC
Q 011463 132 EENQL--KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL---GK 206 (485)
Q Consensus 132 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 206 (485)
+.|+. +++..+++++.+.. +-+..+|+...-.+... |+++++++.++++++.++. +..+|+....++.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l-~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTL-GGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 66653 56778887887754 23455666666555555 8888888888888887654 666777766655544 22
Q ss_pred H----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011463 207 I----YEAKELFKEMETKACSPTVVTYTSLINGLCQS----KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273 (485)
Q Consensus 207 ~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (485)
. ++.++...++.... +-+...|+.+...+... ++..+|...+.+..+.+ +.+...+..|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 34555555555542 33566676666666552 23445666666655543 2345555666666653
No 105
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=7.7e-06 Score=75.62 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011463 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313 (485)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (485)
.+....+.|.+|+.+++.++..+. ...-|..+...|+..|+++.|.++|.+. ..++-.+.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 333444555555555555544321 2223444455555555555555555432 11233444555555555
Q ss_pred HHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 011463 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354 (485)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (485)
.|.++-.+... .......|..-..-+-+.|++.+|.+++
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 55554433321 1222333333333344444444444443
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.2e-05 Score=75.33 Aligned_cols=357 Identities=17% Similarity=0.174 Sum_probs=204.9
Q ss_pred CHHhHHHHH--HHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc-C-------C-C
Q 011463 49 DNSTFSLMI--SKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-G-------C-E 117 (485)
Q Consensus 49 ~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~ 117 (485)
|+.+-..++ ..|..-|+++.|.+-++.+. +..+|..+...|.+..+.+-|.-.+-.|... | . .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 455555554 34567899999988887765 4568999999999998888887777666432 1 0 1
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHH
Q 011463 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197 (485)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (485)
++ ..-..+.-.....|..++|+.+|++..+.. +++.+.+..|.+++|.++-+.--+.. -..||...
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 21 222333334567888999999999887632 33444444599999988776533322 23466666
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCh
Q 011463 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277 (485)
Q Consensus 198 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (485)
..-+-..++.+.|++.|++.... --..+ .|+. .++.....+.+.+. |...|......+...|+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~h----afev~-rmL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVH----AFEVF-RMLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCCh----HHHHH-HHHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccch
Confidence 77777788899999888875321 11111 1111 12222333333322 445566666667778888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
+.|+.+|..+.. |-.+++..+-.|+.++|-.+-++- -|....-.+.+.|-..|++.+|..+|.+.
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888888887654 344556666778888887776542 25555566778888888888888887776
Q ss_pred HHCCCCCCcccccchhhhHHHHHHHHh--cC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH--
Q 011463 358 VLGGITPNRLTWSLHIRIHNTVVQGLC--KT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE-- 432 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-- 432 (485)
.... |.......-..-..+..... .. +.-.|-++|++.-. .+...+..|-+.|.+.+|+++-=+
T Consensus 994 qafs---nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 994 QAFS---NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred HHHH---HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhc
Confidence 4310 00000000000001111111 11 44445555554321 112233456677777777664211
Q ss_pred ------HHhCCCC--CChhhHHHHHHHHHhcCcHHHHHHHHHH
Q 011463 433 ------LVLDGCL--PDEGTWSAVMTALWDRRKMRQAAELLLL 467 (485)
Q Consensus 433 ------~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 467 (485)
++..++. .|....+.....+....++++|+.++-.
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1222222 3455566666666667777777665543
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.4e-05 Score=71.19 Aligned_cols=387 Identities=12% Similarity=0.022 Sum_probs=194.6
Q ss_pred ccccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH
Q 011463 7 FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86 (485)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 86 (485)
++.++.+.|+.=..++...|++++|++=-.+.+ .-.|.-+..|+....++.-.|++++|+..|.+-++..+. +..
T Consensus 31 l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~----~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~ 105 (539)
T KOG0548|consen 31 LSPTNHVLYSNRSAAYASLGSYEKALKDATKTR----RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQ 105 (539)
T ss_pred cCCCccchhcchHHHHHHHhhHHHHHHHHHHHH----hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHH
Confidence 344566667777778999999999998887777 222334778999999999999999999999999998765 667
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHH-----HHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHH
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL-----AILVEENQLKLAFRFYRHMRE-IGIQPCVASLNV 160 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 160 (485)
.+..+..++..... +.+.| .++..|..+. +.+.....+..-++.+.+-.. .+...+......
T Consensus 106 L~~gl~~a~~~~~~---~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 106 LKTGLAQAYLEDYA---ADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HHHhHHHhhhHHHH---hhhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 77777777611100 01111 1111111111 111111111111111111000 000000000000
Q ss_pred HHHHHHhcCCChHHHHHHH------------HhhhhCCC-----------CCCHHhHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 161 LIKALCKNSGTMDAAFKIF------------REMPNRGC-----------TPDSYTYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 161 ll~~~~~~~~~~~~a~~~~------------~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
.+..+... +. .....- ........ ..-..-...+.++..+..+++.|++.+...
T Consensus 174 a~~~l~~~-~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 174 ADGQLKGV-DE--LLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHhcC-cc--ccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 00000000 00 000000 00000000 001123456778888888999999999888
Q ss_pred HHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH-------HHHHHHcCCChHHHHHHHHHHHhC
Q 011463 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS-------LMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 218 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
.+.. -+..-++....+|...|.+..+....+...+.|-. ...-|+. +..+|.+.++++.+...|.+.+..
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 7764 35566677778888999888888887777666522 2222333 333566678888999999887765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccc
Q 011463 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA-GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369 (485)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 369 (485)
...|+. ..+....+++........-.+ |.. .-...-...+.+.|++..|+..|.++++.. |+...+
T Consensus 328 ~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~l 394 (539)
T KOG0548|consen 328 HRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARL 394 (539)
T ss_pred hcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHH
Confidence 444322 122223334443333333221 111 111112344455556666666666655543 333322
Q ss_pred cchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 370 SLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 370 ~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
. +....+|.+. .+..|+.-.+...+..+. ....|.-=..++....++++|.+.|.+.++.
T Consensus 395 Y------sNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 395 Y------SNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred H------HHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1333333333 444444444444444222 2222222233333344555666666555554
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=5.8e-07 Score=82.64 Aligned_cols=212 Identities=17% Similarity=0.159 Sum_probs=116.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011463 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (485)
..+...+...|-...|..+|++.. .|..++.+|...|+..+|..+..+..+. +||+..|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 445555666666666666666543 2445556666666666666666665553 55666666666655555
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 011463 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354 (485)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (485)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+.-+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 5566666666554322 11112222233566666666666655543 334556666666666666666666666
Q ss_pred HHHHHCCCCCCc-ccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 355 DEMVLGGITPNR-LTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432 (485)
Q Consensus 355 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 432 (485)
...... .|+. ..|+ .+-.+|.+. ...+|...+++..+.+.. +...|...+....+-|.+++|++.+.+
T Consensus 543 ~rcvtL--~Pd~~eaWn-------Nls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 543 HRCVTL--EPDNAEAWN-------NLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHhhc--CCCchhhhh-------hhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 665542 3432 2233 555555555 555566666665555433 445555555555556666666666655
Q ss_pred HHh
Q 011463 433 LVL 435 (485)
Q Consensus 433 ~~~ 435 (485)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 543
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=1.2e-06 Score=74.34 Aligned_cols=188 Identities=10% Similarity=0.026 Sum_probs=128.2
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHh---
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK--- 121 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 121 (485)
+..+..+..++..+...|++++|...++++....+.. ....+..+..++.+.|++++|+..++++.+.. |.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 3456678888888999999999999999988876531 12467778888999999999999999998764 21222
Q ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHh
Q 011463 122 SYITVLAILVEE--------NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193 (485)
Q Consensus 122 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (485)
++..+..++... |+.++|.+.++.+.+.. |+.......+..+... ... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~----~~~------~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYL----RNR------L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHH----HHH------H--------HHH
Confidence 455555555554 67888888888888754 5433222211111110 000 0 011
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETKAC--SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
...+...+.+.|++.+|...++....... +.....+..+..++...|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22566778889999999999998876532 223467888889999999999999988887765
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=7.8e-06 Score=80.82 Aligned_cols=248 Identities=15% Similarity=0.101 Sum_probs=176.8
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-GIQP---CVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 103 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
.|.+ |+++.... |.+...|...|......++.++|.++.++++.. ++.- -...|..+++.-... |.-+...++
T Consensus 1443 saeD-ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-G~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAED-FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-GTEESLKKV 1519 (1710)
T ss_pred CHHH-HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHH
Confidence 3444 44444332 445667888888899999999999999988753 2211 123455565554444 777888899
Q ss_pred HHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 011463 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (485)
|+++.+.. -....|..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.+..+.-..
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99988863 13456788899999999999999999999876 2346778888889999998889999999888765211
Q ss_pred -CCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCH--HhHH
Q 011463 259 -PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA--GLYG 335 (485)
Q Consensus 259 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 335 (485)
-......-.+..-.+.|+.+.+..+|+-.+...++ -...|+..++.-.+.|+.+.++.+|+++...++.|.. ..|.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 12344555666667889999999999988887443 6678999999999999999999999999888766543 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 011463 336 KIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
..+..=-..|+-+.+..+-.++
T Consensus 1676 kwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHHHhcCchhhHHHHHHHH
Confidence 5555444556655544444333
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=4.5e-07 Score=69.49 Aligned_cols=116 Identities=9% Similarity=-0.015 Sum_probs=89.6
Q ss_pred HHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 011463 33 VIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 112 (485)
.+|++++ ..++..+..+...+...|++++|...|+.+....+. +...+..+..++.+.|++++|+..|++..
T Consensus 14 ~~~~~al-------~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLL-------SVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHH-------HcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566666 233444566778888888999999888888888765 77888888888888899999999998888
Q ss_pred hcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011463 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159 (485)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (485)
..+ +.+...+..+..++...|++++|...|+...+.. |+...+.
T Consensus 86 ~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~ 129 (144)
T PRK15359 86 MLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWS 129 (144)
T ss_pred hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHH
Confidence 765 5577888888888888889999988888888754 5544443
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=4.4e-07 Score=73.56 Aligned_cols=119 Identities=8% Similarity=0.094 Sum_probs=82.7
Q ss_pred cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH-HHcCC--HHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL-VEENQ--LKLA 139 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 139 (485)
.++.+++...++..++.++. +...|..+...|...|++++|...|++..+.+ +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56667777777777777665 77778888888888888888888888877764 44666666666653 55566 4788
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC
Q 011463 140 FRFYRHMREIGIQP-CVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186 (485)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 186 (485)
.+++++..+.+ | +...+..+...+... |++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~d--P~~~~al~~LA~~~~~~-g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD--ANEVTALMLLASDAFMQ-ADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC
Confidence 88888887755 4 334444444455555 88888888888877763
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=7.5e-06 Score=80.92 Aligned_cols=247 Identities=13% Similarity=0.060 Sum_probs=185.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc-CCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 011463 70 EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-GCEP---TPKSYITVLAILVEENQLKLAFRFYRH 145 (485)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (485)
.+-|++.....|. +...|...|..+...++.++|.+++++.+.. ++.- -...|.++++.-..-|.-+...++|++
T Consensus 1444 aeDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3445555555554 5678999999999999999999999998753 2111 134577788777778888899999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-
Q 011463 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP- 224 (485)
Q Consensus 146 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 224 (485)
+.+.. -....|..+...|.+. +.+++|.++++.|.+. +.-....|...+..+.++++-+.|..++.+..+.-.+.
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~-ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKS-EKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHh-hcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 98853 3345677777787777 9999999999999987 22477889999999999999999999999987752211
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--hhhHHHH
Q 011463 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN--IVTYSTL 302 (485)
Q Consensus 225 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 302 (485)
........+..-.+.|+.+.+..+|+...... +--...|+..+..-.++|+.+.+..+|+++...++.|. -..|...
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 23334445566678899999999999998763 44677899999999999999999999999999877654 2455666
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 011463 303 LNGLCKEGKLQEAVEILDRM 322 (485)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~ 322 (485)
+..=-..|+-+.++.+=.++
T Consensus 1678 LeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHhcCchhhHHHHHHHH
Confidence 65555566655555444333
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.79 E-value=0.0001 Score=65.96 Aligned_cols=428 Identities=11% Similarity=0.133 Sum_probs=252.0
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
....++.+|++-+..+ -.+++++.++++. ..+|..+..|..-++.-....+++....+|.+++..- .+.+.|.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~----~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~ 90 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLV----NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWK 90 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHh----ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHH
Confidence 3445677778777766 9999999999999 5667778899999999999999999999999998874 3677787
Q ss_pred HHHHHHhcc-CChhh----HHHHHHHHH-hcCCCCC-HhhHHHHHHH---------HHHcCCHHHHHHHHHHHHHcCCC-
Q 011463 90 SICRGYGRV-HRPLD----AMRVFDKMK-EFGCEPT-PKSYITVLAI---------LVEENQLKLAFRFYRHMREIGIQ- 152 (485)
Q Consensus 90 ~l~~~~~~~-~~~~~----a~~~~~~~~-~~~~~~~-~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~- 152 (485)
..+.--.+. |+... ..+.|+-.. +.|+.+- -..|+..+.. +..+.+++...++|+++...-+.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 777544332 33332 233444433 3343332 2345555433 34455677788888888753211
Q ss_pred --------------CCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC--CCCCCHH---------------hHHHHHHHH
Q 011463 153 --------------PCVASLNVLIKALCKNSGTMDAAFKIFREMPNR--GCTPDSY---------------TYGTLINGL 201 (485)
Q Consensus 153 --------------~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~---------------~~~~l~~~~ 201 (485)
.+..+-..++. .....+..|.++++++... |...... .|..+|.--
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~---e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIG---ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 11111122221 1224566777777776542 3221111 133333221
Q ss_pred HHcC------CH--hHHHHHHHHHHH-CCCCCChhhH-H----HHHHHHHccCC-------HHHHHHHHHHHHhCCCCCC
Q 011463 202 CRLG------KI--YEAKELFKEMET-KACSPTVVTY-T----SLINGLCQSKS-------VEEAMRLFEEMRSKGVEPN 260 (485)
Q Consensus 202 ~~~~------~~--~~a~~~~~~~~~-~~~~~~~~~~-~----~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~ 260 (485)
...+ .. ....-++++... .+..|+.... . ..-+.+.+.|+ -+++..+++.....-..-+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 1111 00 011112222111 1222222110 0 11112223333 4455666665554322223
Q ss_pred HhhHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC-CHHhHHH
Q 011463 261 VFTYSSLMDGLCK---GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP-DAGLYGK 336 (485)
Q Consensus 261 ~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 336 (485)
..+|..+...--. -...+.....++++......--..+|..+++.-.+..-++.|..+|.++.+.+..+ +..+..+
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 3334333332111 12366677777777765433345578888888888889999999999999887666 6677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCcc--chhhHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV--DSLTYSSL 413 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~--~~~~~~~l 413 (485)
++.-|+ .++.+-|.++|+--++. -+|...|. ...+..+... +-..+..+|++....+..+ ....|..+
T Consensus 408 ~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv------~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~ 478 (656)
T KOG1914|consen 408 LMEYYC-SKDKETAFRIFELGLKK--FGDSPEYV------LKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRM 478 (656)
T ss_pred HHHHHh-cCChhHHHHHHHHHHHh--cCCChHHH------HHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHH
Confidence 887665 67889999999987664 24444332 1344444444 6777899999999874443 35789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCc
Q 011463 414 ITCFCKKGDIHKSARIVDELVLDGCL----PDEGTWSAVMTALWDRRK 457 (485)
Q Consensus 414 ~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~ 457 (485)
+.--..-|+...+.++-+++... ++ +....-..+++-|.-.+.
T Consensus 479 l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 479 LEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhccc
Confidence 99889999999999998888754 22 222333444555554444
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=7.6e-07 Score=75.46 Aligned_cols=186 Identities=9% Similarity=0.016 Sum_probs=128.5
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH---HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH--
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN---STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE-- 85 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-- 85 (485)
..-.....+..+...|++++|+..|+.+.. ..|.++ .++..+..++...|++++|...++.+.+..+....
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES----RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 333455667788899999999999999983 223333 56788899999999999999999999988764222
Q ss_pred HHHHHHHHHHhcc--------CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011463 86 DIFLSICRGYGRV--------HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157 (485)
Q Consensus 86 ~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (485)
..+..+..++... |++++|.+.|+.+.... +.+...+..+...... .. ... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~----~~------~~~--------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYL----RN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHH----HH------HHH--------HH
Confidence 2455556666554 78899999999998763 2233333322221110 00 000 00
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhhhhCCC--CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGC--TPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 158 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
...+...+.+. |++++|...++...+... +.....+..+..++...|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKR-GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 11333445666 999999999999887632 224678889999999999999999999888764
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=3e-06 Score=68.54 Aligned_cols=166 Identities=16% Similarity=0.072 Sum_probs=116.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.|... ..+...+...|+-+....+........++ +.......+....+.|++..|...|.+..... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 344555 66667777778777777777776655443 66666677777888888888888888887654 6778888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
..+|.+.|+++.|..-|.+..+... -+...++.+.-.+.-. |+++.|..++......+.. +...-..+..+....|+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCC
Confidence 8888888888888888888777532 2233444444445555 8888888888777765332 66677777777788888
Q ss_pred HhHHHHHHHHHH
Q 011463 207 IYEAKELFKEME 218 (485)
Q Consensus 207 ~~~a~~~~~~~~ 218 (485)
+..|.++...-.
T Consensus 218 ~~~A~~i~~~e~ 229 (257)
T COG5010 218 FREAEDIAVQEL 229 (257)
T ss_pred hHHHHhhccccc
Confidence 888877765543
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3.9e-05 Score=62.26 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
....|.-+|++|-+. .+|++.+.+....++...|++++|..+++.++.+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344444444444432 2444444444444444455555555555544444
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.6e-05 Score=64.38 Aligned_cols=251 Identities=15% Similarity=0.088 Sum_probs=127.0
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
++-+.-.|.+..++..-+... +.+.++..-..+.++|...|++.....-.. ... .|.......+......-
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~-----~~~~~~e~d~y~~raylAlg~~~~~~~eI~---~~~-~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFS-----SSKTDVELDVYMYRAYLALGQYQIVISEIK---EGK-ATPLQAVRLLAEYLELE 85 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhc-----cccchhHHHHHHHHHHHHcccccccccccc---ccc-CChHHHHHHHHHHhhCc
Confidence 444455667776666655544 112444445555666666666554333222 111 22233333333333333
Q ss_pred CChhhHHH-HHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 99 HRPLDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 99 ~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
++.++-+. +.+.+.......+......-...|.+.+++++|++..+... ..+....+.- .+.+. .+++-|.+
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~Vq--I~lk~-~r~d~A~~ 158 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQ--ILLKM-HRFDLAEK 158 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHH--HHHHH-HHHHHHHH
Confidence 44333333 33333332222222333334455666777777776666521 1222222222 23344 56677777
Q ss_pred HHHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 178 IFREMPNRGCTPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
.++.|.+.. +..+.+.|..++.+ .+...+|.-+|++|.++ .+|+..+.+-...++...+++++|..+++...
T Consensus 159 ~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 159 ELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 777776642 44555555555543 24566677777777653 45666666666677777777777777777776
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChH-HHHHHHHHHHhC
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSS-QAMELLQMMISK 290 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~ 290 (485)
... .-++.+...++-+-...|... ...+.+.++...
T Consensus 235 ~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 235 DKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred hcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 654 224555555554444444443 333444444443
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=2.1e-06 Score=79.13 Aligned_cols=222 Identities=14% Similarity=0.086 Sum_probs=153.0
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
+|-...-..+...+.+.|-...|..++++. ..|..++.+|...|+..+|..+..+..++ +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 344444455667777788888888887754 34667777888888888888877777763 6777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
........-+++|+++.+..... .-..+....... ++++++.+.|+...+.+ +....+|..+..+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~-~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSN-KDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccc-hhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 77766666677777777654432 001111111223 78888888887777653 2256677777777888888
Q ss_pred HhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHH
Q 011463 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286 (485)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (485)
++.|.+.|....... +.+...||++-.+|.+.++-.+|...+.+..+.+ .-+...|-..+-...+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 888888888776642 2356778888888888888888888888887766 44556666667777788888888888877
Q ss_pred HHhC
Q 011463 287 MISK 290 (485)
Q Consensus 287 ~~~~ 290 (485)
+...
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 7653
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.72 E-value=0.00028 Score=67.18 Aligned_cols=434 Identities=13% Similarity=0.088 Sum_probs=239.6
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (485)
....+++.+|+....++.+ ..|....+-..-.-.+.+.|+.++|..+++.....+.. |..+...+-.+|...|..
T Consensus 19 ~ld~~qfkkal~~~~kllk----k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLK----KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 4567899999999999983 22333332222234467999999999999988777665 888999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH--------
Q 011463 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD-------- 173 (485)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-------- 173 (485)
++|..+|++.... -|+......+..+|++.+++.+-.+.--++-+ .++-....+-.+++.+.......+
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999999886 46777777788888888877665544444433 234455666666666654322222
Q ss_pred -HHHHHHHhhhhCC-CCCCHHhHHHHHHHHHHcCCHhHHHHHHHH-HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 011463 174 -AAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKE-METKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250 (485)
Q Consensus 174 -~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 250 (485)
-|.+.++.+.+.+ .--+..-...-...+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 3455566666553 211222222334455678899999999943 3333333344445566778888899999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHH----------------HcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---hcCC
Q 011463 251 EMRSKGVEPNVFTYSSLMDGL----------------CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC---KEGK 311 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~ 311 (485)
++...|.. | |......+ ...+..+...+..++....+ ....|-+-+.+.. .-|+
T Consensus 251 ~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 251 RLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGD 323 (932)
T ss_pred HHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCC
Confidence 99887532 2 22222211 11223333333333333331 1222333333333 4577
Q ss_pred HHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccc--cchhhhHHHHHHHHhc----
Q 011463 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW--SLHIRIHNTVVQGLCK---- 385 (485)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---- 385 (485)
.+++...|-+- .|..| .+..=+..|...=..+.-..++...... .++...- ..-..++...+.....
T Consensus 324 ~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~ 396 (932)
T KOG2053|consen 324 SEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEK 396 (932)
T ss_pred hHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhcccc
Confidence 77766554332 22122 2222222222222222333333332211 0111000 0000001111111111
Q ss_pred CChhHHHHHHHHHH---hCC------Cccchh---------hHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCC-Chh
Q 011463 386 TDPNRAFQVYLSMR---NRS------ISVDSL---------TYSSLITCFCKKGDIH---KSARIVDELVLDGCLP-DEG 443 (485)
Q Consensus 386 ~~~~~a~~~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~p-~~~ 443 (485)
-+.+.-..++++.. +.| ..|+.. +.+.|++.|.+.++.. +|+-+++.-... .| +..
T Consensus 397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~ 474 (932)
T KOG2053|consen 397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQ 474 (932)
T ss_pred CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHH
Confidence 13333333333322 111 122222 3456778888888765 344455544443 23 333
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchh
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVD 479 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (485)
+-..++..|.-.|-+..|.+.|+.+--+.+..+++.
T Consensus 475 ~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlg 510 (932)
T KOG2053|consen 475 TKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLG 510 (932)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccch
Confidence 334577888888988899988887766666655553
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=2e-06 Score=69.54 Aligned_cols=160 Identities=11% Similarity=0.065 Sum_probs=131.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.....+...|+-+.+..+...+. ...+.|.......+...++.|++..|...++++....++ |...|+.+..+|.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~----~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaald 145 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSA----IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhh----ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHH
Confidence 34566777788888888887766 355667777888999999999999999999999988765 9999999999999
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
+.|+++.|..-|.+..+.. +.++...+.+.-.+.-.|+.+.|..++......+. -+...-..+....... |+++.|.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~-g~~~~A~ 222 (257)
T COG5010 146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQ-GDFREAE 222 (257)
T ss_pred HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhc-CChHHHH
Confidence 9999999999999998863 45677889999999999999999999999988652 2555556666666666 9999999
Q ss_pred HHHHhhhh
Q 011463 177 KIFREMPN 184 (485)
Q Consensus 177 ~~~~~~~~ 184 (485)
++-..-..
T Consensus 223 ~i~~~e~~ 230 (257)
T COG5010 223 DIAVQELL 230 (257)
T ss_pred hhcccccc
Confidence 88766544
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.72 E-value=4.4e-05 Score=73.22 Aligned_cols=182 Identities=15% Similarity=0.094 Sum_probs=117.5
Q ss_pred cchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 011463 66 FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145 (485)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (485)
...|...|-+..+..+. -...|..|...|....+...|.+.|+...+.+ +.+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55566666666665443 23567788888887778888888888887764 34567778888888888888888888333
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 011463 146 MREIGI-QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224 (485)
Q Consensus 146 ~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (485)
.-+... ..-...|...--.+... ++...+..-|+...+..+. |...|..++.+|...|++..|.++|.+.... .|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 322110 00111222222223333 7788888888887776543 7778888888888888888888888887664 33
Q ss_pred ChhhHHHH--HHHHHccCCHHHHHHHHHHHHh
Q 011463 225 TVVTYTSL--INGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 225 ~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~ 254 (485)
+. .|... ...-+..|.+.+|...+.....
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22 22222 2233456788888888777654
No 123
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=0.0001 Score=70.89 Aligned_cols=294 Identities=15% Similarity=0.216 Sum_probs=165.5
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
+...-++......+-+++|+.+|.+.. .+..+...++. .-+..++|.+.-+++. .+.+|..+.
T Consensus 1049 yDa~~ia~iai~~~LyEEAF~ifkkf~--------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqla 1111 (1666)
T KOG0985|consen 1049 YDAPDIAEIAIENQLYEEAFAIFKKFD--------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLA 1111 (1666)
T ss_pred CCchhHHHHHhhhhHHHHHHHHHHHhc--------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHH
Confidence 344456677778888888888887654 23334444332 2345555555555442 344566666
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
.+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+.+...++..-.|... ..++-+|++. ++.
T Consensus 1112 kAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt-~rl 1182 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT-NRL 1182 (1666)
T ss_pred HHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh-chH
Confidence 6666666666666555332 255566666666666666666666665555544333332 3344445554 554
Q ss_pred HHHHHHHHhhhhCCCCCCHH--------------------------hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCh
Q 011463 173 DAAFKIFREMPNRGCTPDSY--------------------------TYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 226 (485)
.+.++++. -|+.. -|..|...+...|++..|.+.-++. .+.
T Consensus 1183 ~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1183 TELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred HHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 44433321 12222 3444555555555555555443332 255
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306 (485)
Q Consensus 227 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (485)
.+|..+-.+|...+.+.-| +|...++.....-...++..|...|-+++.+.+++..+... ......|+-|.-.|
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILY 1323 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHH
Confidence 5676666666665544332 34434444455567788888999999999998888765442 22455677777666
Q ss_pred HhcCCHHHHHHHHHHHhHC-CCC------CCHHhHHHHHHHHHhcCCHHHHHH
Q 011463 307 CKEGKLQEAVEILDRMKLQ-GLK------PDAGLYGKIISCFCDIGKYQEAAN 352 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~~ 352 (485)
.+- ++++..+.++-...+ +++ -....|+.+.-.|.+-..++.|.-
T Consensus 1324 sky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred Hhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 654 456665555544332 111 123467777777777777776643
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=1.3e-05 Score=78.21 Aligned_cols=131 Identities=9% Similarity=0.093 Sum_probs=87.0
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC--------
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-------- 82 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------- 82 (485)
..-....|+..+...+++++|+++.+... ...|.....|..++..+.+.++++.+.-+ .+...-..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l----~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHL----KEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 33445567788888899999999988776 33344455555555577777776666555 33222111
Q ss_pred ----------CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 83 ----------ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 83 ----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
-+..++..+..+|.+.|+.++|..+|+++.+.+ +-++.+.|.+...|+.. +.++|.+++.+....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 012456666777777788888888888887776 55677777777777777 788888777777653
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=2.5e-05 Score=76.36 Aligned_cols=171 Identities=10% Similarity=0.010 Sum_probs=111.1
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
+.+...+..++..+...+++++|.++.+...+..+. ....|..+...+...++..++..+ .+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l-------------- 90 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLI-------------- 90 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhh--------------
Confidence 445778999999999999999999999988887655 445555555577777776655554 222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
.......++..+..++..+...+ -+...+..+..+|-+. |+.+++..+++++.+..+. ++.+.|.+...|... +
T Consensus 91 -~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~-g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 -DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKL-NENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 22223333333333333444422 2333555555555555 8888888888888887633 777888888888888 8
Q ss_pred HhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+++|.+++.+.... +...+++..+..+|..+...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888887776553 44445566666666666554
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=6.6e-06 Score=79.34 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=112.2
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 44 NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
...+.++..+..|..+..+.|++++|..+++.+.+..|. +...+..++.++.+.+++++|+..+++....+ +.+....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 355667888888999999999999999999999988766 77788888899999999999999999998875 4456777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
..+..++.+.|++++|..+|+++...+ +-+...+..+...+-.. |+.++|...|+...+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRR-GALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 888888889999999999999998844 22355666666666666 9999999999888775
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.64 E-value=1.2e-06 Score=67.05 Aligned_cols=108 Identities=7% Similarity=-0.054 Sum_probs=91.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+......+...|++++|+..|+.++ .-.|.+...|..+..++...|++++|...|+.+...++. +...+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al----~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV----MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 3346778899999999999999999 344678899999999999999999999999999998775 88899999999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+...|++++|+..|+...+.. +.++..+.....
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~ 134 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMS-YADASWSEIRQN 134 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 999999999999999998864 334555544433
No 128
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=4.8e-08 Score=52.98 Aligned_cols=32 Identities=31% Similarity=0.683 Sum_probs=21.3
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433 (485)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 433 (485)
|+.||..+|+.++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666665
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=1.4e-05 Score=64.95 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=79.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC--HHHH
Q 011463 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL-CKEGK--LQEA 315 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 315 (485)
.++.+++...++...+.+ +.+...|..+...|...|++++|...++++.+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666553 446667777777777777777777777777776433 566666666653 45555 4777
Q ss_pred HHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011463 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (485)
..++++..+.+ +.+...+..+...+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777777664 3456667777777777777777777777776643
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=1.9e-06 Score=65.78 Aligned_cols=110 Identities=10% Similarity=0.101 Sum_probs=81.3
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.+......++..+...|++++|.+.++.+...++. +...+..+...+.+.|++++|...+++....+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 334556667777788888888888888888776654 67777788888888888888888888877664 4566777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (485)
..++...|++++|...++...+.. |+...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 123 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC--GENPEYSE 123 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc--cccchHHH
Confidence 778888888888888888877744 55544433
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=3.9e-05 Score=74.19 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 163 (485)
+...+..|..+....|++++|..+++...+.. |.+......+...+.+.+++++|...+++..... |+.........
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHH
Confidence 56677777777777777778877777777753 3345666777777777777777777777777754 66555555555
Q ss_pred HHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
.+....|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444477778877777777643 225667777777777777777777777777654
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.6e-07 Score=50.93 Aligned_cols=31 Identities=58% Similarity=1.073 Sum_probs=13.9
Q ss_pred CCCCHHhHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00021 Score=57.77 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 165 (485)
..+..++.+....|+.+.|...++.+... +|-+...-..-.-.+-..|++++|.++|+.+.+.. +.|..++..-+...
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 34555666666777777777777777665 23333333333333455677788888888777765 33344444434333
Q ss_pred HhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC---CH
Q 011463 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK---SV 242 (485)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~ 242 (485)
-.. |.--+|++-+....+. +..|...|..+...|...|++++|.-.++++.-.. |.++..+..+...+...| +.
T Consensus 131 ka~-GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 131 KAQ-GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHc-CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHH
Confidence 333 6666777766666654 34477888888888888888888888888876642 234444455555444333 45
Q ss_pred HHHHHHHHHHHhCC
Q 011463 243 EEAMRLFEEMRSKG 256 (485)
Q Consensus 243 ~~a~~~~~~~~~~~ 256 (485)
..+.++|.+..+..
T Consensus 208 ~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 208 ELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHhC
Confidence 66777777777653
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=1.5e-05 Score=70.37 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=56.9
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhh
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (485)
..|++++|+..++.++ ...|.|+..+......+.+.++.++|.+.++++....|. .......+.+++.+.|++.+
T Consensus 318 ~~~~~d~A~~~l~~L~----~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 318 LAGQYDEALKLLQPLI----AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HhcccchHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 3455555555555544 233444444445555555555555555555555554333 23444445555555555555
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 011463 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143 (485)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (485)
|+.++++..... +.++..|..|.++|...|+..++....
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 555555554432 344555555555555555554444433
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=2.1e-05 Score=59.95 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=67.6
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011463 72 LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151 (485)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (485)
.++.+....+. +......+...+...|++++|...|+.+...+ +.+...+..+..++...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 44555555443 44555566666667777777777777776654 4456666667777777777777777777766644
Q ss_pred CCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+.+...+..+...+... |+++.|...++...+.
T Consensus 82 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLAL-GEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 22334444444445554 7777777777666665
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.39 E-value=0.0025 Score=61.11 Aligned_cols=425 Identities=13% Similarity=0.114 Sum_probs=235.0
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
.+.+.|+.++|..+++... ...+.|..+...+-..|.+.|+.++|..+|+++.... |+.+....+..+|.+.++
T Consensus 52 sl~r~gk~~ea~~~Le~~~----~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALY----GLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHhcCchhHHHHHhhhc----cCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHH
Confidence 4578999999998888776 2334488899999999999999999999999999875 558888888889999888
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC-C---------HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcC
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN-Q---------LKLAFRFYRHMREIG-IQPCVASLNVLIKALCKNS 169 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~ 169 (485)
+.+-.+.--++.+. ++-++..+-.+++.....- . ..-|.+.++.+.+.+ ---+..-....+..+-..
T Consensus 126 yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~- 203 (932)
T KOG2053|consen 126 YKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ- 203 (932)
T ss_pred HHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc-
Confidence 76655544444332 3445666666666655422 1 234555666666543 111222222233333344
Q ss_pred CChHHHHHHHH-hhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHH------------
Q 011463 170 GTMDAAFKIFR-EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL------------ 236 (485)
Q Consensus 170 ~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~------------ 236 (485)
|.+++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++...+.. | |...+..+
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a 279 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPA 279 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccc
Confidence 89999999993 3333333335555566778888999999999999888887543 2 32222211
Q ss_pred ----HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH---HcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 237 ----CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL---CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309 (485)
Q Consensus 237 ----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (485)
...+..+...+...+..... ....|-+-+.++ ..-|+.+++...|-+-.. +-..+..=+..|...
T Consensus 280 ~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg-----~kpcc~~Dl~~yl~~ 351 (932)
T KOG2053|consen 280 EAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFG-----DKPCCAIDLNHYLGH 351 (932)
T ss_pred hhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhC-----CCcHhHhhHHHhhcc
Confidence 11222333333333333221 111222333333 345777776655443322 112233333333333
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHH-------hHHHHHHHHHhcCC-----HHHHHHHHHHHH---HC------CCCCCccc
Q 011463 310 GKLQEAVEILDRMKLQGLKPDAG-------LYGKIISCFCDIGK-----YQEAANFLDEMV---LG------GITPNRLT 368 (485)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~a~~~~~~~~---~~------~~~~~~~~ 368 (485)
=..+.-..++....... ++.. .+...+..-.-.|. .+.-..++.+.. +. ++-|....
T Consensus 352 l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~ 429 (932)
T KOG2053|consen 352 LNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYS 429 (932)
T ss_pred CCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccc
Confidence 33444444444443321 1111 12222222222332 222333332221 11 23344444
Q ss_pred cc--chhhhHHHHHHHHhcC-C---hhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 011463 369 WS--LHIRIHNTVVQGLCKT-D---PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442 (485)
Q Consensus 369 ~~--~~~~~~~~l~~~~~~~-~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 442 (485)
+. ....+-+.++..+.+. + .-+|+-+++.....++. |..+--.+++.|+-.|-+..|.+.|+.+.-..+.-|.
T Consensus 430 ~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 430 FGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 43 1233344556666665 3 34455566666555443 5566667889999999999999999988655555444
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011463 443 GTWSAVMTALWDRRKMRQAAELLLLEL 469 (485)
Q Consensus 443 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 469 (485)
.-+. +...+...|++..+...++..+
T Consensus 509 lgh~-~~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 509 LGHL-IFRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred chHH-HHHHHHhcccchhHHHHHHHHH
Confidence 3333 2333445566665555554433
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=0.00062 Score=60.59 Aligned_cols=111 Identities=20% Similarity=0.170 Sum_probs=50.2
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a 175 (485)
..|.+++|+..++.+... .|.|+..+......+.+.++.++|.+.++++.... |+ ......+..++.+. |++.+|
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~-g~~~ea 393 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKG-GKPQEA 393 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhc-CChHHH
Confidence 345555555555554443 12333344444445555555555555555555432 33 22222233333343 555555
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHH
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 212 (485)
..+++...... +-|+..|..|..+|...|+..++..
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 55555544432 2244455555555555555444433
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00017 Score=58.27 Aligned_cols=193 Identities=9% Similarity=0.044 Sum_probs=146.2
Q ss_pred HccCCHHHHHHHHHHhhhhhcCC-CCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 23 RAEKDVNKALVIFDSATAEYANG-FRHDN-STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
....+.++.+++++.+......+ ..++. ..|..++-+....|+.+.|...++.+...-+. +..+-..-...+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhc
Confidence 34678889999998888655555 45554 35667777778899999999999998877644 44444444445667799
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 180 (485)
+++|+++++.+.+.+ |.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|... |++++|.-.++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~-~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSE-GDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhH-hHHHHHHHHHH
Confidence 999999999999876 566777777777777788888888888777764 457888999999999888 99999999999
Q ss_pred hhhhCCCCCCHHhHHHHHHHHHHcC---CHhHHHHHHHHHHHC
Q 011463 181 EMPNRGCTPDSYTYGTLINGLCRLG---KIYEAKELFKEMETK 220 (485)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 220 (485)
++.-..+ .++..+..+...+.-.| +.+.+.+.|.+..+.
T Consensus 179 E~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9887642 26666677776665544 567788888888875
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=2.1e-05 Score=60.55 Aligned_cols=116 Identities=10% Similarity=0.029 Sum_probs=67.4
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCC---HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH--HHHHHHHHHHhcc
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHD---NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE--DIFLSICRGYGRV 98 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 98 (485)
..+++..+...++.+.. ..+.+ ......+...+...|++++|...|+.+....+.++. .....+...+...
T Consensus 23 ~~~~~~~~~~~~~~l~~----~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAK----DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HCCCHHHHHHHHHHHHH----HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 36667777666766662 22223 223344456666677777777777777665533321 2344455666667
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (485)
|++++|+..++..... ......+.....++.+.|+.++|...|+.
T Consensus 99 ~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 99 GQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777776554332 23344555666667777777777776664
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=1.6e-05 Score=70.80 Aligned_cols=125 Identities=14% Similarity=0.258 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
....++..+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++.+..+.. +.+..........+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33444555555666666666666666653 22 33345555555666666666666665542 334555555556666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCChHHHHHHHHhhhh
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCV-ASLNVLIKALCKNSGTMDAAFKIFREMPN 184 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 184 (485)
..++++.|+++.+++.... |+. .+|..+...|... |+++.|+-.++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~-~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQL-GDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhc-CCHHHHHHHHhcCcC
Confidence 6666666666666666643 433 3566666666665 666666666666553
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.9e-06 Score=46.92 Aligned_cols=33 Identities=33% Similarity=0.705 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 441 (485)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999888887
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=8.5e-05 Score=66.36 Aligned_cols=124 Identities=17% Similarity=0.236 Sum_probs=92.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (485)
...++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+.+.... .+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 3455666667788888888888888763 44 344567777777788888888888876533 356666666677888
Q ss_pred cCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
.++++.|..+.+++.+.. |-+..+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888763 4455688888888888888888888887764
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=0.00014 Score=56.04 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=74.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh--hhHHHHH
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN---VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI--VTYSTLL 303 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 303 (485)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......+.. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344444 3566777777777776652 212 122223445666777777777777777776422221 2333456
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
..+...|++++|+..++..... ......+......+...|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777777654332 234455666677777777777777777653
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.17 E-value=6.4e-05 Score=55.82 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=50.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRG 94 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 94 (485)
..+..+...|++++|.+.|+.+... ..+.+.....+..++.++.+.|+++.|.+.++.+....+.. ...++..+..+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKK-YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3445555566666666666666521 00101113344555566666666666666666665543321 13445555555
Q ss_pred HhccCChhhHHHHHHHHHhc
Q 011463 95 YGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~ 114 (485)
+.+.|++++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 56666666666666666554
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=4.7e-06 Score=45.62 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 440 (485)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888876
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=3.4e-05 Score=63.87 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=45.3
Q ss_pred HHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 011463 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139 (485)
Q Consensus 60 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (485)
+.+.++|.+|+..|.+++...+. |...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 34444444444444444444333 33344444444444444444444444444432 12234444444444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 011463 140 FRFYRHMREIGIQPCVASLNVLIKA 164 (485)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~ll~~ 164 (485)
.+.|++.++ +.|+..+|..-+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 444444444 23444444444443
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.13 E-value=5e-05 Score=68.09 Aligned_cols=92 Identities=9% Similarity=0.044 Sum_probs=67.3
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+..+...|++++|+..|++++ ...+.+...|..+..+|...|++++|+..+++++...+. +...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al----~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAI----DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 455667778888888888777 233556677777777777888888888888877777654 566777777777777
Q ss_pred CChhhHHHHHHHHHhcC
Q 011463 99 HRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~ 115 (485)
|++++|+..|++..+.+
T Consensus 84 g~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 84 EEYQTAKAALEKGASLA 100 (356)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 88888888887777653
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.09 E-value=5e-05 Score=57.29 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=83.4
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+......+...+...|++++|..+|+.+...++. +..-|..|..++-..|++++|+..|......+ +.++..+..+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4455666677778899999999999999888766 77788888888989999999999999988876 467888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 011463 129 ILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~ 149 (485)
++...|+.+.|.+.|+..+..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.09 E-value=0.00011 Score=65.99 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC
Q 011463 55 LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134 (485)
Q Consensus 55 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (485)
..+..+...|++++|++.|++++...+. +...+..+..+|.+.|++++|+..++++...+ +.+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 3456677899999999999999998776 78888899999999999999999999998875 456778888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011463 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165 (485)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 165 (485)
++++|...|++.++.. |+.......+..+
T Consensus 85 ~~~eA~~~~~~al~l~--P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLA--PGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 9999999999998854 6666555555443
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.06 E-value=8.8e-05 Score=55.99 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011463 85 EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164 (485)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 164 (485)
.+..-.+...+...|++++|..+|+.+...+ +-+..-|..|..++-..|++++|+..|........ -+...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3445555666667788888888888877654 34566677777777778888888888888777652 344445555555
Q ss_pred HHhcCCChHHHHHHHHhhhhC
Q 011463 165 LCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+... |+.+.|.+.|+.....
T Consensus 113 ~L~l-G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLAC-DNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHc-CCHHHHHHHHHHHHHH
Confidence 5565 8888888888777765
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.06 E-value=7.5e-05 Score=52.77 Aligned_cols=88 Identities=11% Similarity=0.170 Sum_probs=35.8
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+..+...|++++|+..++.+. ...+.+...+..+...+...|++++|.+.++......+. +...+..+...+...
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKAL----ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHH----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 334444444444444444444 111222333444444444444444444444444433322 223333344444444
Q ss_pred CChhhHHHHHHHH
Q 011463 99 HRPLDAMRVFDKM 111 (485)
Q Consensus 99 ~~~~~a~~~~~~~ 111 (485)
|+++.|...+...
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 4444444444433
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0024 Score=55.67 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=42.5
Q ss_pred HcCCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHH---hHHHHHHHHHhcC
Q 011463 272 CKGGCSSQAMELLQMMISKR---HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG---LYGKIISCFCDIG 345 (485)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 345 (485)
.+.|.+..|.+.|...+... ..++...|.....+..+.|+.++|+.--+..... |.. .+..-..++...+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHH
Confidence 34555666666665555432 2333444444445555566666666555555432 222 2222233455555
Q ss_pred CHHHHHHHHHHHHH
Q 011463 346 KYQEAANFLDEMVL 359 (485)
Q Consensus 346 ~~~~a~~~~~~~~~ 359 (485)
+|++|.+-+++..+
T Consensus 336 ~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665554
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=5.5e-05 Score=53.48 Aligned_cols=97 Identities=12% Similarity=0.206 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
++..++..+...|++++|...++.+.+..+. +...+..+...+...|++++|.+.++...... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 3566788889999999999999999887654 55778888999999999999999999988764 445578888999999
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 011463 132 EENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~ 150 (485)
..|+++.|...+....+..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 9999999999999887643
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.01 E-value=0.00025 Score=63.70 Aligned_cols=124 Identities=11% Similarity=0.119 Sum_probs=90.5
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHH
Q 011463 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI--GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192 (485)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (485)
+.+.+......++..+....+.+.+..++.+.+.. ....-..|.+.++..|... |..+.++.+++.=...|+-||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~-~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLEL-GAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhc-CCHHHHHHHHhChhhcccCCChh
Confidence 34556667777777777777788888888877764 2222334556888888887 88888888888888888888888
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 239 (485)
+++.||..+.+.|++..|.++...|...+...+..++...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888877666555666666555555544
No 155
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.3e-05 Score=44.20 Aligned_cols=33 Identities=55% Similarity=0.942 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 225 (485)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.00025 Score=52.55 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=73.2
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCC--CCHhhHHHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE--PTPKSYITV 126 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 126 (485)
.++..++..+.+.|++++|.+.|+.+....+.. ....+..+..++.+.|+++.|...|+.+...... ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456667777888888888888888887765431 1346666788888888888888888888764311 124567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..++.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 778888888888888888888764
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.99 E-value=0.0021 Score=54.12 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHH---HHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI---FLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
+......+...|++++|.+.|+.+....+.. ... ...++.++.+.+++++|...+++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334455556666666666666666654432 221 133445566666666666666666654
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=8.3e-06 Score=55.97 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHhhhhhcCCC-CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhh
Q 011463 25 EKDVNKALVIFDSATAEYANGF-RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (485)
+|++++|+.+|+++... .. .++...+..++.++.+.|++++|.++++. .+.++. +......+..++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~---~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL---DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHH---HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHH
Confidence 46677777777777732 11 11344445566777777777777777766 322222 23444445666777777777
Q ss_pred HHHHHHH
Q 011463 104 AMRVFDK 110 (485)
Q Consensus 104 a~~~~~~ 110 (485)
|++.|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7776654
No 159
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.96 E-value=0.011 Score=52.27 Aligned_cols=130 Identities=6% Similarity=0.014 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHH
Q 011463 333 LYGKIISCFCDIGKYQEAANFLDEMVLGG-ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411 (485)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 411 (485)
+|...+....+..-.+.|..+|-+..+.+ +.++...++ +++..++..++.-|..+|+.-...-++ +...-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~-------A~~E~~~~~d~~ta~~ifelGl~~f~d-~~~y~~ 470 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYC-------AFIEYYATGDRATAYNIFELGLLKFPD-STLYKE 470 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeH-------HHHHHHhcCCcchHHHHHHHHHHhCCC-chHHHH
Confidence 45556666667778889999999998877 455655555 999999888999999999987765333 334445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPD--EGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
-.+.-+..-|+-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+=+++.+.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5666777889999999999976654 2233 457777777767788887777666666553
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=0.0082 Score=50.60 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLD--GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
.+.+-|.+.|.+..|+.-++.+++. +.+........+..+|.+.|..++|.++......
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 5667789999999999999999986 3334455566778899999999999988766544
No 161
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=2e-05 Score=43.07 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSP 224 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (485)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.92 E-value=1.9e-05 Score=54.23 Aligned_cols=81 Identities=9% Similarity=0.143 Sum_probs=45.5
Q ss_pred cCCcchHHHHHHHHhhcCCC-CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCD-ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (485)
.|+++.|+.+++++....+. ++...+..+..++.+.|++++|+.++++ ...+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46666777777776666542 1334444566666777777777777766 2221 1223334444666666777777766
Q ss_pred HHHH
Q 011463 142 FYRH 145 (485)
Q Consensus 142 ~~~~ 145 (485)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.92 E-value=0.0026 Score=55.34 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=43.4
Q ss_pred CChHHHHHHHHhhhhC----CCC-CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-----h-hhHHHHHHHHHc
Q 011463 170 GTMDAAFKIFREMPNR----GCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT-----V-VTYTSLINGLCQ 238 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-~~~~~ll~~~~~ 238 (485)
|+++.|.+.|++..+. +.+ .-..++..+...+.+.|++++|.++|++........+ . ..+...+-++..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 5666666666665442 100 0123455566667777777777777777655422211 1 112223334555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011463 239 SKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~~ 255 (485)
.|++..|...+++....
T Consensus 209 ~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHGTT
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 66666777776666544
No 164
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00025 Score=63.73 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=63.5
Q ss_pred CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011463 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETK--ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266 (485)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 266 (485)
.+......++..+....+.+.+..++.+.+.. ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555555555555555543 1111223344555666666666666666555555566666666666
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308 (485)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (485)
+|..+.+.|++..|.++...|...+...+..++...+.+|.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666666555555554444444444444444433
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=5.6e-05 Score=48.85 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=41.0
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
++..+...|++++|+..|+.++ ...|.++..+..+..++...|++++|...|+++.+..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l----~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL----KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH----CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4556677777777777777777 33355667777777777777777777777777766543
No 166
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=8.8e-05 Score=48.62 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=57.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-cHHHHHHHHHHHHHcC
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR-KMRQAAELLLLELMNK 472 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 472 (485)
+...|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.++++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46788899999999999999999999999873 445667888999999999 7999999999999864
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00036 Score=58.07 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=66.3
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCCh
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTM 172 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~ 172 (485)
-..+.+++.+|+..|.+.++.. |-|++.|..-..+|.+.|.++.|++-.+..+... |. ...|..+-.++... |++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~-gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLAL-GKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHcc-CcH
Confidence 3456777778888787777754 4456667777777777887777777777777643 43 34666666666666 777
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLI 198 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~ 198 (485)
++|.+.|++.++. .|+-.+|-.=+
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 7777777777765 44444444333
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=2.5e-05 Score=41.60 Aligned_cols=29 Identities=38% Similarity=0.753 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDG 437 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 437 (485)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.84 E-value=0.0003 Score=60.77 Aligned_cols=132 Identities=11% Similarity=0.152 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHH
Q 011463 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSS 412 (485)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 412 (485)
+|..++....+.+..+.|..+|.+..+.+ ..+|. +-+..+.+..++..+.+.|.++|+...+.-.. +...|..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~----~~~~~--vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK----RCTYH--VYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CS-TH--HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC----CCCHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 45666666666666777777777776321 11121 11222334333344666677777776654222 6667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 413 LITCFCKKGDIHKSARIVDELVLDGCLPDE---GTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.++.+...|+.+.|..+|++.+.. +.++. ..|..++..=.+.|+.+.+.++.+++.+.-
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777777777765 22222 367777776667777777777777776653
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.84 E-value=9.6e-05 Score=47.72 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
+...+...|++++|++.|+++++.. +-+...+..+..++.+.|++++|..+++++++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567888999999999999999873 3356677788888999999999999999998876543
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.0015 Score=52.11 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=69.2
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
....+..++..+...|++++|...|+++.+..+.+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677888888899999999999999887654432 3678888889999999999999999988753 3356667777
Q ss_pred HHHHHHcCCHHHHH
Q 011463 127 LAILVEENQLKLAF 140 (485)
Q Consensus 127 ~~~~~~~~~~~~a~ 140 (485)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777654433
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.81 E-value=0.00057 Score=47.81 Aligned_cols=76 Identities=17% Similarity=0.395 Sum_probs=39.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC-------ChHHHHHHHHhhhhCCCCCCHHhHHHH
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGI-QPCVASLNVLIKALCKNSG-------TMDAAFKIFREMPNRGCTPDSYTYGTL 197 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (485)
.|..+...+++.....+|+.+++.|+ -|+..+|+.++...++..- ..-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 5666666666666554311 112334444445444455555555554
Q ss_pred HHHH
Q 011463 198 INGL 201 (485)
Q Consensus 198 ~~~~ 201 (485)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 4443
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.00077 Score=53.70 Aligned_cols=92 Identities=11% Similarity=-0.030 Sum_probs=71.5
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCC-CC-CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGF-RH-DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
.+..++..+...|++++|+..|++++. ... ++ ....+..++..+.+.|++++|...++++....+. +...+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALK---LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 455667788899999999999999983 221 22 2467889999999999999999999999998665 56777788
Q ss_pred HHHHhccCChhhHHHHHH
Q 011463 92 CRGYGRVHRPLDAMRVFD 109 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~ 109 (485)
...+...|+...+..-++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 888888887655544333
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0019 Score=54.15 Aligned_cols=101 Identities=9% Similarity=0.062 Sum_probs=52.3
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC---ChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH---RPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
|.|...|..|..+|...|+++.|...|.+..+..++ ++..+..+..++.... ...++..+|+++...+ +.++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 445555555555555555555555555555555443 4555544444433221 2334555555555543 3344445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
..+...+...|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555555555555555555554
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.79 E-value=0.0017 Score=47.39 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=54.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSIC 92 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 92 (485)
.....+-..|+.++|+.+|+++. ..+.... ...+-.+...+...|++++|..+++......+.. +......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al---~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRAL---AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH---HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34555666777777777777777 3443332 3355566667777777777777777766654321 112222333
Q ss_pred HHHhccCChhhHHHHHHHHHh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~ 113 (485)
.++...|+.++|+..+-....
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 455566777777766655543
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.0016 Score=56.61 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHh----CCCCCC--HhhHHHHHHHHHcC-CChHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHh
Q 011463 241 SVEEAMRLFEEMRS----KGVEPN--VFTYSSLMDGLCKG-GCSSQAMELLQMMISK----RHR-PNIVTYSTLLNGLCK 308 (485)
Q Consensus 241 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~ 308 (485)
++++|...+++... .| .++ ...+..+...|... |++++|.+.|+++.+. +.. .-..++..+...+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 66666665555442 22 111 23455666677777 8999999999987653 211 113456677788999
Q ss_pred cCCHHHHHHHHHHHhHCCCCCC-----H-HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 309 EGKLQEAVEILDRMKLQGLKPD-----A-GLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
.|++++|..+|++........+ . ..+...+-++...|++..|...+++....
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999876532221 1 12334455777889999999999998764
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.77 E-value=0.00072 Score=53.69 Aligned_cols=115 Identities=11% Similarity=0.003 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHHhccCChhhH
Q 011463 27 DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 104 (485)
++..+...+..+.. ..+.......|..++..+...|++++|...|+.+....+.+ ...++..+...+...|++++|
T Consensus 14 ~~~~~~~~l~~~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 14 TFTIVADILLRILP--TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccchhhhhHhcc--CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555531 11222234556777777777888888888888877654332 224677777778888888888
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHH-------HcCCHHHHHHHHH
Q 011463 105 MRVFDKMKEFGCEPTPKSYITVLAILV-------EENQLKLAFRFYR 144 (485)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~ 144 (485)
+..+++..... +....++..+...+. ..|+++.|...++
T Consensus 92 ~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 92 LEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 88888777642 333445555555555 4555554443333
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0026 Score=48.98 Aligned_cols=159 Identities=10% Similarity=0.082 Sum_probs=114.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
...+.....+.=|+++..+-..+.. ..-|++.--..+..++.+.|+..+|...|++...--...+......+.++
T Consensus 59 a~~~~~a~~q~ldP~R~~Rea~~~~-----~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A 133 (251)
T COG4700 59 AHTLLMALQQKLDPERHLREATEEL-----AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA 133 (251)
T ss_pred hHHHHHHHHHhcChhHHHHHHHHHH-----hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence 3455556666667766655554444 23456666677889999999999999999999876666688888889999
Q ss_pred HhccCChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
....+++..|...++.+.+... ..++.....+.+.+...|....|...|+.....- |+...-......+.++ |+.+
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~q-gr~~ 210 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQ-GRLR 210 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHh-cchh
Confidence 9999999999999999877531 1245567778889999999999999999998854 5544433333444555 7666
Q ss_pred HHHHHHHh
Q 011463 174 AAFKIFRE 181 (485)
Q Consensus 174 ~a~~~~~~ 181 (485)
++..-+..
T Consensus 211 ea~aq~~~ 218 (251)
T COG4700 211 EANAQYVA 218 (251)
T ss_pred HHHHHHHH
Confidence 65544333
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=5e-05 Score=49.64 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=30.2
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 80 (485)
..|++++|+++|+.+.. ..|.+...+..++.+|.+.|++++|.++++.+....
T Consensus 3 ~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ----RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHH----HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45666666666666652 224455555566666666666666666666665553
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.75 E-value=0.0021 Score=46.85 Aligned_cols=106 Identities=11% Similarity=0.022 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC----HhhHHHHH
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT----PKSYITVL 127 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~ 127 (485)
.....++-..|+.++|+.+|++....|.... ...+..+...+...|++++|+.+++...... |+ ......+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 3445666777888888888888877765532 3455666677777788888888887776542 22 22222333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011463 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165 (485)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 165 (485)
.++...|+.++|.+.+-.... ++...|..-+..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 455667777777777765554 2333444444444
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.75 E-value=0.00058 Score=54.20 Aligned_cols=92 Identities=10% Similarity=-0.106 Sum_probs=68.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCC-C-CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFR-H-DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
+..++..+...|++++|+..|+.++. .... + ...++..+...+...|++++|.+.++.+....+. ....+..+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~---l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMR---LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 34566778889999999999999983 2211 1 2457899999999999999999999999987654 456677777
Q ss_pred HHHh-------ccCChhhHHHHHHH
Q 011463 93 RGYG-------RVHRPLDAMRVFDK 110 (485)
Q Consensus 93 ~~~~-------~~~~~~~a~~~~~~ 110 (485)
..+. ..|+++.|+..+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 7776 66676655544443
No 182
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.74 E-value=0.029 Score=49.94 Aligned_cols=434 Identities=13% Similarity=0.127 Sum_probs=235.3
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCC-CCCHH-hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH--HHh
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGF-RHDNS-TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR--GYG 96 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 96 (485)
.+.+++++++|.++|.++..+...+. --..+ .-+.++.+|. ..+.+.....+....+..+. ..|..+.. .+-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~---s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK---SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC---chHHHHHHHHHHH
Confidence 46789999999999999985321110 00112 2345556664 45566666666666554332 22333333 244
Q ss_pred ccCChhhHHHHHHHHHhc--CCCC------------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEF--GCEP------------TPKSYITVLAILVEENQLKLAFRFYRHMREIGI----QPCVASL 158 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 158 (485)
+.+.+.+|++.+....+. +..+ +-..=+..+.++...|++.++..+++++...=+ ..+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778999999988877664 2111 111124566778899999999999998876433 3788888
Q ss_pred HHHHHHHHhc-------CCC-------hHHHHHHHHhhhhC------CCCCCHHhHHHHHHHHHHc--CCHhHHHHHHHH
Q 011463 159 NVLIKALCKN-------SGT-------MDAAFKIFREMPNR------GCTPDSYTYGTLINGLCRL--GKIYEAKELFKE 216 (485)
Q Consensus 159 ~~ll~~~~~~-------~~~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~ 216 (485)
+.++-.+.+. ... ++.+.-+.+++... .+.|.......++....-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 8866555543 011 12222222333221 1223333333333322211 112222334444
Q ss_pred HHHCCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 011463 217 METKACSPTVVT-YTSLINGLCQSKSVEEAMRLFEEMRSKGVE----PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291 (485)
Q Consensus 217 ~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (485)
....-+.|+... ...+...+.. +.+++..+.+.+....+. --..+|..++....+.++...|...+..+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 444444555332 3334444443 556666665555433211 124578888899999999999999988876653
Q ss_pred CCCChhhHHH-------HHHHHHh----cCCHHHHHHHHHHHhHCCCCCCHH-hHHHH---HHHHHhcCC-HHHHHHHHH
Q 011463 292 HRPNIVTYST-------LLNGLCK----EGKLQEAVEILDRMKLQGLKPDAG-LYGKI---ISCFCDIGK-YQEAANFLD 355 (485)
Q Consensus 292 ~~~~~~~~~~-------l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l---~~~~~~~~~-~~~a~~~~~ 355 (485)
+ +...-.. +-+..+. .-+...=+.+|+......+ |.. .-..+ ..-+-+.|. -++|+.+++
T Consensus 329 p--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 329 P--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred C--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 2 2222111 1122221 1122333455555554432 221 12222 233445565 788999999
Q ss_pred HHHHCCCCCCcccccchhhhHHHHHHHHhcC----ChhHHHHHHHHHHhCCCccc----hhhHHHHHHH--HHhcCCHHH
Q 011463 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKT----DPNRAFQVYLSMRNRSISVD----SLTYSSLITC--FCKKGDIHK 425 (485)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~ 425 (485)
.+.+- .|.+..-. -.+.-.+-..|... .+.+-+.+-.-+.+.|+.|- ...-|.|.+| +...|++.+
T Consensus 405 ~il~f--t~yD~ec~--n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 405 LILQF--TNYDIECE--NIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHh--ccccHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 88763 33222111 11111122222222 33333444444455666553 3344555544 356799998
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 426 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+.-.-.-+.+ +.|+..++..++-++....++++|..++.+..-
T Consensus 481 c~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 481 CYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 8776555554 589999999999889999999999999876544
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.73 E-value=0.00012 Score=47.88 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=36.5
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+.|++++|++.|+.+....|. +..++..+..+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567777777777777776655 6666667777777777777777777777665
No 184
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.73 E-value=0.00088 Score=46.91 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=47.9
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILVEEN--------QLKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444666666666666666666 566666666665554422 2345667777777777888888888887
Q ss_pred HHHHh
Q 011463 163 KALCK 167 (485)
Q Consensus 163 ~~~~~ 167 (485)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77654
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.0012 Score=57.01 Aligned_cols=129 Identities=12% Similarity=0.156 Sum_probs=72.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG-LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (485)
+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666666432 2233334333333 22244555577777766655 344566666666666
Q ss_pred HhcCCHHHHHHHHHHHhHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 307 CKEGKLQEAVEILDRMKLQGLKPDA---GLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667777777777766654 22222 3666666666667777777777666665
No 186
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.71 E-value=0.04 Score=50.95 Aligned_cols=381 Identities=12% Similarity=0.068 Sum_probs=216.1
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh-ccCCh
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG-RVHRP 101 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 101 (485)
....+.+.+..++..++ ...|--..-|......-.+.|..+.+.++|++....- +.+...|...+..+. ..|+.
T Consensus 56 ~~~~~~~~~r~~y~~fL----~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-p~SvdlW~~Y~~f~~n~~~d~ 130 (577)
T KOG1258|consen 56 DSIEDVDALREVYDIFL----SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-PLSVDLWLSYLAFLKNNNGDP 130 (577)
T ss_pred CchhHHHHHHHHHHHHH----hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhccCCCH
Confidence 33445567777788777 3334444567777777788999999999999988754 357788877776554 45788
Q ss_pred hhHHHHHHHHHhc-CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---c-----CCC
Q 011463 102 LDAMRVFDKMKEF-GCE-PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---N-----SGT 171 (485)
Q Consensus 102 ~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~-----~~~ 171 (485)
+.....|+..... |.. .+...|...+..-..++++.....+|++.++.- ...++.....+.+ . ...
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~ 206 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLS 206 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcC
Confidence 8888888888764 321 245567888888788899999999999988732 1112211111111 0 022
Q ss_pred hHHHHHHHHhhhh--------------------CCCCCC--HHhHHHHHHHH-------HHcCCHhHHHHHHHHHHHC--
Q 011463 172 MDAAFKIFREMPN--------------------RGCTPD--SYTYGTLINGL-------CRLGKIYEAKELFKEMETK-- 220 (485)
Q Consensus 172 ~~~a~~~~~~~~~--------------------~~~~~~--~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~-- 220 (485)
.+++.++-..... .+.+.+ ....+.+...+ ............|+.-...
T Consensus 207 ~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpY 286 (577)
T KOG1258|consen 207 IDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPY 286 (577)
T ss_pred HHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccc
Confidence 3333322222221 000000 01111111111 1111122222223322222
Q ss_pred -CC----CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 011463 221 -AC----SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295 (485)
Q Consensus 221 -~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (485)
.+ +++..+|...+.--...|+++.+.-+|+...-. +..=...|--.+.-....|+.+-|..++....+-..+..
T Consensus 287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 11 123456777777788889999999999887632 111223344444444455888888888888776544433
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHH-hHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCcccccc
Q 011463 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG-LYGKIISCFCDIGKYQEAA---NFLDEMVLGGITPNRLTWSL 371 (485)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~ 371 (485)
+.+--.-....-..|++..|..+++.+.+.- |+.. .-..-+....+.|+.+.+. .++.... ++..+...
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~-----~~~~~~~i 438 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY-----EGKENNGI 438 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc-----ccccCcch
Confidence 3322222233455789999999999998863 4332 2222334456778887777 3333332 22222222
Q ss_pred hhhhHHHHHHH--HhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcC
Q 011463 372 HIRIHNTVVQG--LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421 (485)
Q Consensus 372 ~~~~~~~l~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (485)
....+.-.... .++.+.+.|..++..+.+.-+. +...|..+++.+...+
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 22222122222 2223889999999999887544 7778888888776655
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0031 Score=59.40 Aligned_cols=70 Identities=11% Similarity=-0.055 Sum_probs=58.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
++..|..+.-.....|++++|...++++.+. .|+...|..+..++...|++++|.+.+++++..++..++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 5567777776677789999999999999987 578888888888999999999999999999988776654
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.68 E-value=0.00037 Score=60.42 Aligned_cols=265 Identities=15% Similarity=0.074 Sum_probs=163.4
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHH------HhhcCCCCCHHHH
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDR------VNKEKCDITEDIF 88 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~~~~~~~~~~~ 88 (485)
..-+++.|+.+..+.+|+.++ +.|. .| ..+|..+..+|.-.+++++|+++... .+.... -...+.
T Consensus 24 GERLck~gdcraGv~ff~aA~---qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl-GEAKss 98 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAAL---QVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL-GEAKSS 98 (639)
T ss_pred HHHHHhccchhhhHHHHHHHH---Hhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh-cccccc
Confidence 456889999999999999999 4453 33 34678888899999999999887532 111110 012233
Q ss_pred HHHHHHHhccCChhhHHHHHHHHH----hcCC-CCCHhhHHHHHHHHHHcCC--------------------HHHHHHHH
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMK----EFGC-EPTPKSYITVLAILVEENQ--------------------LKLAFRFY 143 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 143 (485)
..|...+--.|.+++|+..-.+-+ +.|- .....++-.+...|...|+ ++.|.++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 345555556678888766443322 2221 1123445556666665543 23344444
Q ss_pred HHHHH----cCCC-CCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh----CCCC-CCHHhHHHHHHHHHHcCCHhHHHHH
Q 011463 144 RHMRE----IGIQ-PCVASLNVLIKALCKNSGTMDAAFKIFREMPN----RGCT-PDSYTYGTLINGLCRLGKIYEAKEL 213 (485)
Q Consensus 144 ~~~~~----~~~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 213 (485)
..=++ .|-. .--..|..+-..|+-. |+++.|+...+.-+. .|-. .....+..+..++.-.|+++.|.+.
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL-Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLL-GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeee-ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 33221 1100 1112345555555555 899998877655432 2322 2345778899999999999999999
Q ss_pred HHHHHHC----C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHcCCChHHHHHH
Q 011463 214 FKEMETK----A-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-----GVEPNVFTYSSLMDGLCKGGCSSQAMEL 283 (485)
Q Consensus 214 ~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (485)
|+..... | -.....+...|...|.-..+++.|+.++.+-... +..-....+.+|..++...|..++|+.+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8875432 1 1123445666777787778888888887653321 1223466788899999999999999888
Q ss_pred HHHHHh
Q 011463 284 LQMMIS 289 (485)
Q Consensus 284 ~~~~~~ 289 (485)
....++
T Consensus 338 ae~hl~ 343 (639)
T KOG1130|consen 338 AELHLR 343 (639)
T ss_pred HHHHHH
Confidence 776654
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.68 E-value=0.031 Score=48.68 Aligned_cols=285 Identities=14% Similarity=0.108 Sum_probs=175.3
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHH--HHHhcCCcchHHHHHHHHhhcCCCCCHHH--HHHHHHHHhcc
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMIS--KLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRV 98 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 98 (485)
.-.||-..|++.-.+... -+..|-..+..++. +-.-.|+++.|.+-|+.|... |.... +..|.-.--+.
T Consensus 95 agAGda~lARkmt~~~~~----llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~ 167 (531)
T COG3898 95 AGAGDASLARKMTARASK----LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hccCchHHHHHHHHHHHh----hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhc
Confidence 346788888888776652 23334444444443 335679999999999999863 22222 22333334567
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHH--HHHHH--HHHhcCCChH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASL--NVLIK--ALCKNSGTMD 173 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~ll~--~~~~~~~~~~ 173 (485)
|..+.|...-++..... +.-...+...+...+..|+++.|+++++.-+... +.++..-- ..++. +......+..
T Consensus 168 GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 88888888888877653 3456788888999999999999999998776543 23333211 11221 1111124566
Q ss_pred HHHHHHHhhhhCCCCCCHH-hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSY-TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 252 (485)
.|...-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+-+....|+. + .+..+.+.|+ .++.-++..
T Consensus 247 ~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 247 SARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD--TALDRLKRA 318 (531)
T ss_pred HHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC--cHHHHHHHH
Confidence 666666666654 33322 2223456788889999999999988876444442 2 2233344454 333333333
Q ss_pred HhC-CCCC-CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHhHC
Q 011463 253 RSK-GVEP-NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC-KEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 253 ~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~ 325 (485)
.+. ..+| +....-.+..+....|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+..+.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 221 1222 4555666777777888888887777666553 566777777766554 448888888888887765
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.67 E-value=0.00018 Score=47.77 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=51.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchhcc
Q 011463 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQ 481 (485)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 481 (485)
..|.+.+++++|.+.+++++..+ +.+...|.....++.+.|++++|.+.++++++.+..+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 46778889999999999988863 4455667777888889999999999999999888776665543
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.61 E-value=0.019 Score=44.46 Aligned_cols=154 Identities=10% Similarity=0.024 Sum_probs=107.0
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
..+..+.=++++..+-..+-... .|++.--..|..+....|+..+|...|++...--+..|......+.++....+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~--ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAI--APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhh--chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 33444444555444433333332 3667777788899999999999999999988754556788888899999999999
Q ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHH
Q 011463 137 KLAFRFYRHMREIG---IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213 (485)
Q Consensus 137 ~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 213 (485)
..|...++++.+.+ -.|| +...+...+... |.+..|..-|+.....- |+..........+.+.|+..++..-
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~-g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQ-GKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhc-CCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHH
Confidence 99999999988754 2233 333445556666 99999999999998873 4444444445557778876666544
Q ss_pred HHHH
Q 011463 214 FKEM 217 (485)
Q Consensus 214 ~~~~ 217 (485)
+..+
T Consensus 216 ~~~v 219 (251)
T COG4700 216 YVAV 219 (251)
T ss_pred HHHH
Confidence 4443
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=0.00012 Score=38.86 Aligned_cols=25 Identities=48% Similarity=0.982 Sum_probs=9.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (485)
|+.++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.029 Score=46.10 Aligned_cols=144 Identities=9% Similarity=0.074 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
+...++.++...|.+.-....+.+.++...+.++.....+++.-.+.|+.+.|...|++..+..-..+..++.. -+.-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~--~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI--MVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH--HHHh
Confidence 34556666666677777777777777766566777777777777778888888888877665433344444331 0010
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 446 (485)
.....+.-. ++..|...+.++...... ++...|.-.-+..-.|+..+|++..+.|... .|...+-+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 111122233 788888888888776554 5666665555556678999999999999876 45444433
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00026 Score=46.36 Aligned_cols=63 Identities=8% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC-ChhhHHHHHHHHHh
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH-RPLDAMRVFDKMKE 113 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 113 (485)
+.+|..++..+...|++++|+..|++.++.++. +...|..+..++.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444555555555555555555555554433 4444455555555555 35555555554443
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0097 Score=52.08 Aligned_cols=164 Identities=12% Similarity=0.031 Sum_probs=105.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccch---h---hhHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH---I---RIHN 377 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~---~~~~ 377 (485)
.++...|+.++|..+--...+.. ..+....-.-..++--.++.+.+...|++.++.+ |+....... . ..+-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 34567788888888777766653 2233333333334556778888888888887744 543332210 0 0000
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhC---CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH---HHHHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNR---SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW---SAVMT 450 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~ 450 (485)
.-.....+. ++..|.+.|.+.+.. +.+|+...|.....+..+.|+..+|+.-.++.... |.... ..-..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHH
Confidence 111122334 788899999988864 34556667777778888999999999999998864 33322 22344
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 451 ALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
++...+++++|++.++++++....
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 566789999999999999987543
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.57 E-value=0.0073 Score=49.53 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=28.0
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
..+...|++.+|++.|+.+.... .+.+--..+...++.++.+.|+++.|...++++++..|
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 34445555555555555555321 11111233444455555555555555555555555543
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0047 Score=51.92 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=88.8
Q ss_pred HHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhc---C-Chh
Q 011463 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK---T-DPN 389 (485)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~-~~~ 389 (485)
....-++.-...+ +-|...|-.|...|...|+.+.|..-|.+..+. .|+..... ..+...+.. . ...
T Consensus 140 ~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~------~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 140 ALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEIL------LGLAEALYYQAGQQMTA 210 (287)
T ss_pred HHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHhcCCcccH
Confidence 3333344433433 668889999999999999999999999998874 34433221 133333222 2 678
Q ss_pred HHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
++..+|+++....+. |..+...|...+...|++.+|...|+.|.+. -|....+..++.
T Consensus 211 ~a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 211 KARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 899999999988766 7788888889999999999999999999987 344455555554
No 198
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.0073 Score=56.93 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=27.5
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
|++++|...++++...+ |+...|..+..++...|+.++|.+.|++...
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666666655543 3455555555566666666666666655544
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.53 E-value=0.013 Score=48.16 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCcHHHHH
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDE----GTWSAVMTALWDRRKMRQAA 462 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 462 (485)
.+.+.|.+.|.+..|..-++.+++. -|+. .....++.++.+.|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3677899999999999999999987 3332 34456788899999888554
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.06 Score=47.28 Aligned_cols=283 Identities=14% Similarity=0.169 Sum_probs=156.1
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
+++..++......|+.+-|..+.+. .|++. .-+..+.+.|+.+.| +.++.+.| +|| -+|..++
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~---------Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl 63 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLEL---------EPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLL 63 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHc---------CCChH---HHHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHH
Confidence 4677888888999999999988863 23332 224455667766666 44555543 112 2444444
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
..--+.. .. +.+ .+... .|.. ..+...|++..+.+.-..+|.+--+. ...-...+...... .+.
T Consensus 64 ~L~~~l~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~-----~~~a~~~l~~~~~~-~~~ 127 (319)
T PF04840_consen 64 HLKRKLS-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDRF-----QELANLHLQEALSQ-KDV 127 (319)
T ss_pred HHHHhCC-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcchH-----HHHHHHHHHHHHhC-CCh
Confidence 4332222 11 222 33322 1222 22344455555655555554432110 01111222222222 333
Q ss_pred HHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHH---H-HCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 011463 173 DAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEM---E-TKACSPTVVTYTSLINGLCQSKSVEEAMR 247 (485)
Q Consensus 173 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 247 (485)
+.-...+..+.+. +-..+......++ ++-.++++.- . +.+......+.+..+.-+...|+...|.+
T Consensus 128 ~~~~~~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~k 198 (319)
T PF04840_consen 128 EEKISFLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEK 198 (319)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHH
Confidence 4333333333321 0011111111111 1112222211 1 11112223455666777788899888888
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCC
Q 011463 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 327 (485)
+-.+.. .|+...|...+.+++..+++++-..+... .-++.-|..++.+|.+.|+..+|..++.++
T Consensus 199 l~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~----- 263 (319)
T PF04840_consen 199 LKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI----- 263 (319)
T ss_pred HHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC-----
Confidence 876663 57889999999999999999987776432 226688999999999999999999888762
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
+ +..-+..|.+.|++.+|.+.-.+.
T Consensus 264 ~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 264 P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 1 245677889999999988775443
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.083 Score=49.82 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH----------HHHHHHcCCHHHHHHHHHHHHHcCC
Q 011463 82 DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV----------LAILVEENQLKLAFRFYRHMREIGI 151 (485)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (485)
.|.+..|..+.......-.++.|...|-+...- +.......+ ...-+--|++++|.++|-.+-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 467788888887777777777777777655432 111111111 111222467777877776665533
Q ss_pred CCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHH
Q 011463 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230 (485)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 230 (485)
..+....+. |++-.+.++++.--.. +-..-...|+.+...++....|++|.+.|..-... .
T Consensus 765 --------LAielr~kl-gDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e 826 (1189)
T KOG2041|consen 765 --------LAIELRKKL-GDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------E 826 (1189)
T ss_pred --------hhHHHHHhh-hhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------H
Confidence 122333343 6666665555432111 00112346677777777777777777776654321 2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011463 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310 (485)
Q Consensus 231 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (485)
..+.++.+...+++...+.+.+ +-+....-.+..++...|.-++|.+.+-+... | ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHH
Confidence 2345555555555544444333 33445555666667777777766665543311 1 13345566666
Q ss_pred CHHHHHHHHHHH
Q 011463 311 KLQEAVEILDRM 322 (485)
Q Consensus 311 ~~~~a~~~~~~~ 322 (485)
++.+|.++-++.
T Consensus 893 QW~~avelaq~~ 904 (1189)
T KOG2041|consen 893 QWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHhc
Confidence 666666655443
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.025 Score=46.44 Aligned_cols=132 Identities=14% Similarity=0.051 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH-----H
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS-----L 267 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 267 (485)
..+.++.++.-.+.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...|++..+..-..+..+++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566666777777777777787777766566667777777777778888888888876655422333333332 2
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
...|.-++++..|...+.++...+.. ++...|.-.-+....|+..+|.+.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445566777777777777665433 4444444444445567777888887777765
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.38 E-value=0.0078 Score=51.17 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHhcC--CCCCHhhHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVFDKMKEFG--CEPTPKSYITVLA 128 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 128 (485)
|......+.+.|++++|...|+.+++..|... ..++..+...|...|++++|...|+.+.+.- -+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333556777777777777776654421 3456666677777777777777777776541 0112344444555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC
Q 011463 129 ILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
++...|+.++|..+|+.+.+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6666777777777777766643
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.0019 Score=56.25 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=76.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH----hCCC-CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHh----CCC-CCChh
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMR----SKGV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS----KRH-RPNIV 297 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 297 (485)
.|..|...|.-.|+++.|+...+.-. +-|- ......+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 44555555566677777776654422 1121 11234456667777777888888777766432 221 11233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHC----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQ----G-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+.-+|...|.-..++++|+.++.+-... + .--....+..+..+|...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455666666667777777776653221 0 112345666777777777887777777666544
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0057 Score=48.82 Aligned_cols=103 Identities=11% Similarity=0.165 Sum_probs=62.3
Q ss_pred CCCHHhHHHHHHHHHh-----cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHh
Q 011463 47 RHDNSTFSLMISKLVS-----ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 121 (485)
..+-.+|..++..+.+ .|..+-....+..|.+-|+..|..+|+.|++.+-+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 5577777777777754 35666677777788888887788888888877665 3221 1111111100
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 168 (485)
- .-.+.+-|++++++|...|+-||..++..++..+.+.
T Consensus 114 -------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 114 -------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred -------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 0 0123455666777777777777777777777666444
No 206
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0083 Score=52.55 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=50.1
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCH-----------HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHH
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDN-----------STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 88 (485)
+.+.+.|++..|...|++++.........+. .++..+.-++.+.+++..|++..+.++..++. |+-.+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHH
Confidence 4678888888888888887743222211121 13444444455555555555555555554433 44444
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHh
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
..-..++...|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4445555555555555555555554
No 207
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.16 Score=49.10 Aligned_cols=123 Identities=10% Similarity=0.074 Sum_probs=85.8
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
..+...-+..+.+..-+.-|+.+-..-. .+++ .......+..+.+.|++++|...|-+.+.. ..| .
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 4456667888888999999998876533 2333 234555567778899999999888776643 122 1
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (485)
.++.-|....+..+-...++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+...
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 245555666677777778888888874 466666788889999888887777666544
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.29 E-value=0.0076 Score=48.13 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHhcc-----CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011463 83 ITEDIFLSICRGYGRV-----HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157 (485)
Q Consensus 83 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (485)
.+-.+|..+++.|.+. |-.+-....+..|.+.|+..|..+|+.|+.++=+ |.+ .|...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~- 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNF- 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccH-
Confidence 3677777777777654 5566666777888888888888888888877643 221 12221
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 158 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
+..+...+ ..+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 108 fQ~~F~hy---p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY---PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC---cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 22222112 24568899999999999999999999999999977665
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.27 E-value=0.00087 Score=45.12 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-hhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 407 SLTYSSLITCFCKKGDIHKSARIVDELVLD--GCL---PD-EGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 407 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
..+++.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|+++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457888999999999999999999998854 112 22 45677788899999999999999999876
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.27 E-value=0.018 Score=44.34 Aligned_cols=72 Identities=17% Similarity=0.307 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-----IGIQPCVASL 158 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 158 (485)
.+...++..+...|+++.|..+.+.+.... |.+...|..+|.++...|+...|.+.|+++.+ .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 356667777778888888888888888765 55677888888888888888888888887753 4777776553
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.22 E-value=0.0028 Score=41.95 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+.+.++++.|.++++.+...+|. +...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555555443 4444444555555555555555555555443
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.22 E-value=0.0087 Score=50.90 Aligned_cols=97 Identities=10% Similarity=0.037 Sum_probs=74.6
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVD--SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD----EGTWSAVMT 450 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~ 450 (485)
.......+. ++++|...|+.+.+..+... +..+-.+..+|...|++++|...|+.+.+. .|+ ...+..++.
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHH
Confidence 444443444 89999999999998755421 356777889999999999999999999976 232 344555667
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 451 ALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
++...|+.++|.+.++++++..+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 78899999999999999999765544
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.17 E-value=0.14 Score=45.55 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=18.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 225 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444555666666666666666666666654
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=97.16 E-value=0.0091 Score=45.59 Aligned_cols=96 Identities=6% Similarity=-0.044 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.......-+...|++++|..+|+.+...++. +..-|..|..++-..+++++|+..|......+ .-|+..+.....++.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHH
Confidence 3444455667889999999999988887765 67778888888888899999999988876654 346666777888888
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 011463 132 EENQLKLAFRFYRHMREI 149 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~ 149 (485)
..|+.+.|...|+.....
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 999999999999888873
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.26 Score=46.72 Aligned_cols=202 Identities=10% Similarity=0.052 Sum_probs=122.4
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH----------HHHhccCChhhHHHHHHHHHhcCC
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC----------RGYGRVHRPLDAMRVFDKMKEFGC 116 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~~~~~~~ 116 (485)
.|.+..|..+...-...-.++.|...|-+.... +....-..|- ..-+--|++++|.++|-.+-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 567888999998888888888888888766443 1221111111 12223488999999887776542
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHH
Q 011463 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC----VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192 (485)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (485)
..+..+.+.|++-...++++. .|-..| ...++.+...++.. ..+++|.+.+..-...
T Consensus 765 --------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~-~~We~A~~yY~~~~~~------- 825 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEM-MEWEEAAKYYSYCGDT------- 825 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccch-------
Confidence 345566677777766666543 111111 24566666666665 6777777777654321
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (485)
...+.++.+..++++-+.+-..+. .+....-.+...+...|.-++|.+.+-+.- .| ...+..|.
T Consensus 826 --e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv 889 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCV 889 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHH
Confidence 234566666666666555544443 355566677778888888777776664322 11 23455666
Q ss_pred cCCChHHHHHHHHHH
Q 011463 273 KGGCSSQAMELLQMM 287 (485)
Q Consensus 273 ~~~~~~~a~~~~~~~ 287 (485)
..+++.+|.++-+..
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777766553
No 216
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.11 E-value=0.014 Score=42.14 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=24.6
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
+++..|+++.|++.|.+.+..-|. ....||.-..++.-.|+.++|++-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444444444444444444332 344444444444444444444444444443
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.0055 Score=47.28 Aligned_cols=104 Identities=22% Similarity=0.374 Sum_probs=72.0
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCH------------------HhHHHHHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDN------------------STFSLMISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
......++...+...++.+..-....+-++. .+...++..+...|++++|.++++.+....|
T Consensus 14 ~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP 93 (146)
T PF03704_consen 14 RAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP 93 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 3445678999999999888853332222221 1234455667789999999999999999987
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHh-----cCCCCCHhhHH
Q 011463 82 DITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-----FGCEPTPKSYI 124 (485)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 124 (485)
- +...+..+|.+|...|+...|++.|+++.. .|+.|++.+-.
T Consensus 94 ~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 94 Y-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred C-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 6 889999999999999999999999998853 48888877644
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=97.07 E-value=0.013 Score=44.79 Aligned_cols=96 Identities=9% Similarity=-0.121 Sum_probs=77.0
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011463 374 RIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453 (485)
Q Consensus 374 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 453 (485)
.+|......|...++++|..+|+-+...++. +...|..|..+|-..+++++|+..|......+ .-|...+-....++.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHH
Confidence 3444444555555999999999999887655 77788889999999999999999999887664 344555566788999
Q ss_pred hcCcHHHHHHHHHHHHHc
Q 011463 454 DRRKMRQAAELLLLELMN 471 (485)
Q Consensus 454 ~~g~~~~A~~~~~~~~~~ 471 (485)
..|+.+.|...|+.++++
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 999999999999999884
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.04 E-value=0.18 Score=44.83 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=51.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHhHCCCCCCHHhHHH
Q 011463 263 TYSSLMDGLCKGGCSSQAMELLQMMISKR---HRPNIVTYSTLLNGLCK---EGKLQEAVEILDRMKLQGLKPDAGLYGK 336 (485)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (485)
+...++-+|....+++...++.+.+.... ......+-....-++.+ .|+.++|..++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556788888888888888887652 11122222334445556 7888888888888555555677788877
Q ss_pred HHHHHH
Q 011463 337 IISCFC 342 (485)
Q Consensus 337 l~~~~~ 342 (485)
+++.|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 777664
No 220
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.38 Score=46.08 Aligned_cols=318 Identities=13% Similarity=0.109 Sum_probs=177.5
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCc--chHHHHHHHHhhcCCCCCHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF--RPAEDLLDRVNKEKCDITEDIF 88 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~ 88 (485)
..++...+++-+...+.+..|+++-..+.. +-. .....|......+.+..+. +++.+.+.+=+..... ....|
T Consensus 436 ~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~---p~~-~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy 510 (829)
T KOG2280|consen 436 RHLSEEVVIDRLVDRHLYSVAIQVAKLLNL---PES-QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISY 510 (829)
T ss_pred hhhchhhhhHHHHhcchhHHHHHHHHHhCC---ccc-cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeH
Confidence 445666778888999999999999988771 111 1255677777777776433 2333333333332222 34467
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhcCCC----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCC
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMKEFGCE----PTPKSYITVLAILVEENQLKLAFRFYRHMREIG-----------IQP 153 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~ 153 (485)
..+.......|+++-|..+++.=...+.. .+...+...+.-+.+.|+.+....++-.+...- .+.
T Consensus 511 ~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~ 590 (829)
T KOG2280|consen 511 AAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPL 590 (829)
T ss_pred HHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 77777777889999998888754332210 122234555666677777777776666554321 011
Q ss_pred CHHHHHHHHH--------HHHhcCCChHHHHHHH--Hhhhh----CCCCCCHHhHHHHHHHHHHcCCHhHHH--------
Q 011463 154 CVASLNVLIK--------ALCKNSGTMDAAFKIF--REMPN----RGCTPDSYTYGTLINGLCRLGKIYEAK-------- 211 (485)
Q Consensus 154 ~~~~~~~ll~--------~~~~~~~~~~~a~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~-------- 211 (485)
....|..++. .+... ++-..+...+ +...+ .+..|+ ......++.+.....-..
T Consensus 591 a~~lY~~~~r~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred hhHHHHHHHHhhchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 1111211111 00111 1111111111 11000 111112 222333444433311111
Q ss_pred --HHHHHHHH-CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 011463 212 --ELFKEMET-KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 212 --~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
++.+.+.. .+......+.+--+.-+...|+-.+|.++-.+.+ -||-..|..-+.+++..+++++-+++-+..
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk- 741 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK- 741 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc-
Confidence 11122211 1223344455666666777788888888777665 568888888888888888887766554433
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356 (485)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (485)
.++.-|..++.+|.+.|+.++|.+.+.+... . .....+|.+.|++.+|.++--+
T Consensus 742 -----ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~------l---~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 742 -----KSPIGYLPFVEACLKQGNKDEAKKYIPRVGG------L---QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -----CCCCCchhHHHHHHhcccHHHHhhhhhccCC------h---HHHHHHHHHhccHHHHHHHHHH
Confidence 1366788888899999999999888765432 1 1567788888888888776544
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.83 E-value=0.048 Score=40.30 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=73.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhh
Q 011463 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT 409 (485)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 409 (485)
|..++..++.++++.|+.+....+++..- |+.++...-. +. --......|+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~----------------~~--------~~~~spl~Pt~~l 54 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKE----------------GD--------YPPSSPLYPTSRL 54 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcccc----------------Cc--------cCCCCCCCCCHHH
Confidence 45678888999999999998888887654 3333321110 00 0112345789999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhc
Q 011463 410 YSSLITCFCKKGDIHKSARIVDELVLD-GCLPDEGTWSAVMTALWDR 455 (485)
Q Consensus 410 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~ 455 (485)
..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.-....
T Consensus 55 L~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 55 LIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998876 7777888999988765533
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.81 E-value=0.018 Score=51.85 Aligned_cols=67 Identities=6% Similarity=-0.065 Sum_probs=50.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH---HHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE---DIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
|.++..+..+..+|.+.|++++|+..|++.++.++. +. .+|..+..+|.+.|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445667888888888888888888888888877654 23 34777888888888888888888887764
No 223
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.78 E-value=0.24 Score=41.05 Aligned_cols=179 Identities=12% Similarity=0.041 Sum_probs=94.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH-
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCD--ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE- 132 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 132 (485)
-+..-.+.|++++|.+.|+.+....|. -...+...++.++-+.++++.|+...++....-.......|...|.+++.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 344445777777777777777766543 12344555666677777777777777777665322223344444444442
Q ss_pred ------cCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 133 ------ENQLK---LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 133 ------~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
..+.. .|..-|+.++..- |+.. =...|..-+..+... =...=..+.+.|.+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~--------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~k 179 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRY--PNSR--------------YAPDAKARIVKLNDA----LAGHEMAIARYYLK 179 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHC--CCCc--------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 22222 3333344444322 3321 011111111111110 00011235666777
Q ss_pred cCCHhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 204 LGKIYEAKELFKEMETKACSPT---VVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
.|.+..|..-+++|.+. .+.+ ...+-.+..+|...|-.++|.+.-.-+...
T Consensus 180 r~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 180 RGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 78888887777777776 2222 234555667777777777777766555544
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.77 E-value=0.0033 Score=42.25 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=43.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHHHhh
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNK 78 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 78 (485)
+..+..++...|++++|+..|++++.. .....++ ..++..+..++...|++++|++.+++..+
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456777888888888888888887754 2222221 34677777888888888888888877654
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.70 E-value=0.35 Score=45.46 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
+...+..-+.+...+..|.++|..|-. ...+++.....++|++|..+-++..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc
Confidence 333444444445555566666655432 1234445556666666666655543
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.67 E-value=0.4 Score=42.17 Aligned_cols=64 Identities=6% Similarity=0.078 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCcHHHHHHHHHHHHHc
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW-DRRKMRQAAELLLLELMN 471 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 471 (485)
+..+.-.+..+-...|++..|..--+...+. .|....|..+...-. ..|+-.++..++-+.++-
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3344444555555666666666555555443 555555555555433 336666666666655543
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.67 E-value=0.072 Score=44.44 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=46.8
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCC---HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHH
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHD---NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGY 95 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 95 (485)
.+...|++..|...|...++ +.|.+ +.++..|..++..+|++++|...|..+.+.-++. -++.+..+....
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~----~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIK----KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHH----cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 34445556666666655552 22222 3344555556666666666666665555543321 234455555555
Q ss_pred hccCChhhHHHHHHHHHhc
Q 011463 96 GRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~ 114 (485)
.+.|+.++|...|+++.+.
T Consensus 226 ~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 226 GRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 5556666666666555554
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.59 E-value=0.52 Score=42.41 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=49.4
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCC--CHH---------hHHHHHHHHHhcCCcchHHHHHHHHhhcC
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRH--DNS---------TFSLMISKLVSANQFRPAEDLLDRVNKEK 80 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 80 (485)
.+.....+-.+.+.+++++|++.+.....+....-+| |.. .=+..++.++..|++.++..+++++...-
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3334444555677788888888777666321111111 111 11344566777888888888777766554
Q ss_pred CC----CCHHHHHHHHHHHhc
Q 011463 81 CD----ITEDIFLSICRGYGR 97 (485)
Q Consensus 81 ~~----~~~~~~~~l~~~~~~ 97 (485)
.+ .+..+|+.++-.+++
T Consensus 159 lkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhH
Confidence 33 567777775555443
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.56 E-value=0.043 Score=40.53 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHhHHHHHHHHHHcCCHhHHHHHHHHHH---------------HCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 191 SYTYGTLINGLCRLGKIYEAKELFKEME---------------TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
..++..++.++++.|+.+....+++..= .....|+..+..+++.+|+..+++..|.++.+.+.+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455556666666666666555554431 1122344455555555555555555555555554433
Q ss_pred -CCCCCHhhHHHHHH
Q 011463 256 -GVEPNVFTYSSLMD 269 (485)
Q Consensus 256 -~~~~~~~~~~~l~~ 269 (485)
+++.+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 34444444444444
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.54 E-value=0.0074 Score=35.01 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
++..+...|...|++++|.++|+++++..|. +...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 3444555555555555555555555555443 44444433
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.50 E-value=0.017 Score=52.00 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=40.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG----TWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+...++.+..+|...|++++|+..|++.++. .|+.. .|..+..+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666654 44432 3556666666666666666666666664
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.44 E-value=0.2 Score=36.47 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=50.8
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH---HHHHHHHHHhc
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED---IFLSICRGYGR 97 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 97 (485)
++...|+.+.|++.|.+++ .-.|..+..|+.-..++.-+|+.++|++-+++..+.....+.. .|..-...|..
T Consensus 52 alaE~g~Ld~AlE~F~qal----~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL----CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHH----HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4455666666666666666 3344556666666666666666666666666665543222222 23333344555
Q ss_pred cCChhhHHHHHHHHHhcC
Q 011463 98 VHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~ 115 (485)
.|+-+.|..-|+...+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 566666666666655544
No 233
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.44 E-value=0.81 Score=42.83 Aligned_cols=410 Identities=11% Similarity=0.023 Sum_probs=232.0
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+...|..++.--....+.+.+..++..++..-|- -..-|......-.+.|..+.+.++|++-... ++.+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl-~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPL-CYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 4445666665444444556777788888766432 3456777888888999999999999998874 6778888877776
Q ss_pred HHH-HcCCHHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHH---
Q 011463 129 ILV-EENQLKLAFRFYRHMREI-GIQ-PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC--- 202 (485)
Q Consensus 129 ~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 202 (485)
.+. ..|+.+.....|+..... |.. .+...|...+..-..+ +++.....+++++++. ....++....-|.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~q-ks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQ-KSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhcc-ccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 654 467888888889888764 321 3445677777776666 9999999999999875 2222222222211
Q ss_pred Hc------CCHhHHHHHHHHHHH--------------------CCCCCCh--hhHHHHHH-------HHHccCCHHHHHH
Q 011463 203 RL------GKIYEAKELFKEMET--------------------KACSPTV--VTYTSLIN-------GLCQSKSVEEAMR 247 (485)
Q Consensus 203 ~~------~~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~ll~-------~~~~~~~~~~a~~ 247 (485)
+. ...+++.++-..... .+.+.+. ...+.+-. .+-......+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 11 223333333222221 0000000 01111111 1112222333333
Q ss_pred HHHHHHhC---CC----CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 248 LFEEMRSK---GV----EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320 (485)
Q Consensus 248 ~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (485)
.|+.-.+. .+ .++..+|...+..-...|+.+.+.-++++..-. ...=...|-..+.-....|+.+-|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 34433332 11 224567888888888899999999999887542 11112334444444455699999998888
Q ss_pred HHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHH---HHHH
Q 011463 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAF---QVYL 396 (485)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~---~~~~ 396 (485)
...+..++..+.+.-.-....-..|+++.|..+++...+.- |+...... .-+....+. +.+.+. +++.
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l------~~~~~e~r~~~~~~~~~~~~l~s 427 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVL------RKINWERRKGNLEDANYKNELYS 427 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHH------HHHhHHHHhcchhhhhHHHHHHH
Confidence 77665443333322222223344679999999999998753 55332210 111111122 444444 2333
Q ss_pred HHHhCCCccchhhHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---cHHHHHHHHHHH
Q 011463 397 SMRNRSISVDSLTYSSLIT-----CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR---KMRQAAELLLLE 468 (485)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 468 (485)
.... +.. +......+.- .+.-.++.+.|..++.++.+. ++++...|..++..+...+ +.+--.-++..+
T Consensus 428 ~~~~-~~~-~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~ 504 (577)
T KOG1258|consen 428 SIYE-GKE-NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSGREYDLLEPIDWKE 504 (577)
T ss_pred Hhcc-ccc-CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHH
Confidence 2222 111 2222222222 233468999999999999986 5677777888887766554 233333344444
Q ss_pred HHcCCCccc
Q 011463 469 LMNKCVEAE 477 (485)
Q Consensus 469 ~~~~~~~~~ 477 (485)
......+++
T Consensus 505 ~~~~~~~~~ 513 (577)
T KOG1258|consen 505 LKMLIDFDD 513 (577)
T ss_pred Hhhhccccc
Confidence 444444333
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.048 Score=47.98 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=75.1
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCC-----C---------CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhh
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKC-----D---------ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~-----~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 122 (485)
...+.+.|++..|...|+++...-. + .-..++..+..+|.+.+++..|++.-++.++.+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 4567788888888888877544210 0 112345556666777777777777777777665 556666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHhhhh
Q 011463 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM-DAAFKIFREMPN 184 (485)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~a~~~~~~~~~ 184 (485)
.-.-..++...|+++.|+..|+++.+ +.|+......-+..+.+..... +...++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66667777777777777777777776 3365555554444443321222 233455555543
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.39 E-value=0.058 Score=40.32 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=42.5
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+....+.|++++|++.|+.+......| +-...+-..++.++.+.+++++|...+++.++.+|......|...+.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 444556677777777777766321111 223445566666777777777777777777766654333334444433
No 236
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.38 E-value=0.77 Score=43.33 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccch--
Q 011463 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS-- 407 (485)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~-- 407 (485)
..+...+..-+.+...+.-|-++|.+|-... .++...... +..+|+.+-++..+.- |++
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~k----------------siVqlHve~~~W~eAFalAe~hPe~~--~dVy~ 808 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDLK----------------SLVQLHVETQRWDEAFALAEKHPEFK--DDVYM 808 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccHH----------------HHhhheeecccchHhHhhhhhCcccc--ccccc
Confidence 3444444444455556666666666653211 333333344 5566665555444321 111
Q ss_pred ---------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 408 ---------LTYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 408 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
.-|...-.+|.+.|+..+|.++++++..
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1122333455555666666666555543
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.36 E-value=0.33 Score=45.65 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHHhc---CCChHHH
Q 011463 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPC-----VASLNVLIKALCKN---SGTMDAA 175 (485)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~ll~~~~~~---~~~~~~a 175 (485)
.-+|.-+... +|| .+..++....-.|+-+.+++.+.+..+.+ +.-. .-.|+.++..++.. ..+.+.+
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555553 233 34455556666778888888777765532 2111 12233333333322 3677888
Q ss_pred HHHHHhhhhCCCCCCHHhHH-HHHHHHHHcCCHhHHHHHHHHHHHCC---CCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 011463 176 FKIFREMPNRGCTPDSYTYG-TLINGLCRLGKIYEAKELFKEMETKA---CSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 251 (485)
.++++.+.++ -|+...|. .-.+.+...|++++|++.|++..... .+.....+--+..++.-..+|++|...|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888888876 34544443 33456677788888888888654321 112334455566677778888888888888
Q ss_pred HHhCCCCCCHhhHHHHHH-HHHcCCCh-------HHHHHHHHHHHhC
Q 011463 252 MRSKGVEPNVFTYSSLMD-GLCKGGCS-------SQAMELLQMMISK 290 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~-~~~~~~~~-------~~a~~~~~~~~~~ 290 (485)
+.+.+ ..+..+|.-+.. ++...|+. ++|.++|.++...
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 88764 334444444433 33446666 7888888877553
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.35 E-value=0.16 Score=43.99 Aligned_cols=131 Identities=7% Similarity=0.047 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHh----CCCc-----cc
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN----RSIS-----VD 406 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~----~~~~-----~~ 406 (485)
+..+....+.++++++.|+...+.....++..+ ..++|..+...+... |+++|.-+..+..+ .+++ ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L--Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAML--ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee--eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 444455555556666666555543222222221 233444444445444 55555544443332 1111 00
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011463 407 SLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLPD-EGTWSAVMTALWDRRKMRQAAELLLLEL 469 (485)
Q Consensus 407 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 469 (485)
....-.+.-++...|....|.+..++..+. |-++. ......+.+.|...|+.+.|+.-|+.+.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 111223334555566666666665555432 32221 1223345556666777777776666554
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=96.34 E-value=0.38 Score=43.75 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCC-HHhHHHHHHHHHh---------cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 27 DVNKALVIFDSATAEYANGFRHD-NSTFSLMISKLVS---------ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
+.+.|+.+|++++.. +...|+ ...|..+..++.. .....+|.++.++..+.++. |..+...+..+..
T Consensus 273 ~~~~Al~lf~ra~~~--~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNK--SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhc--ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 556788889988832 223333 4555555544332 22334677778888887765 7777777888778
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCChH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA---SLNVLIKALCKNSGTMD 173 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~ 173 (485)
-.++++.|..+|++....+ |....+|......+.-.|+.++|.+.+++..+.. |... .....+..|+. ..++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~--~~~~ 424 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVP--NPLK 424 (458)
T ss_pred hhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcC--Cchh
Confidence 8888999999999988865 3345666666667777899999999998877644 4332 22333334444 4677
Q ss_pred HHHHHHHhhh
Q 011463 174 AAFKIFREMP 183 (485)
Q Consensus 174 ~a~~~~~~~~ 183 (485)
.+.+++-+-.
T Consensus 425 ~~~~~~~~~~ 434 (458)
T PRK11906 425 NNIKLYYKET 434 (458)
T ss_pred hhHHHHhhcc
Confidence 7777775433
No 240
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.31 E-value=0.78 Score=41.30 Aligned_cols=421 Identities=12% Similarity=0.146 Sum_probs=219.1
Q ss_pred ccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHH
Q 011463 9 WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88 (485)
Q Consensus 9 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 88 (485)
.+...++.++++-+..++..++.++.++++. ..+|-=+.+|...+..-....++.....+|.+++.... +...|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~----~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW 112 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLS----SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLW 112 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhc----CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHH
Confidence 4455677888899999999999999999988 44444566777777777778889999999999888743 56677
Q ss_pred HHHHHHHhccCChh------hHHHHHHHHHh-cCCCCC-HhhHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCC
Q 011463 89 LSICRGYGRVHRPL------DAMRVFDKMKE-FGCEPT-PKSYITVLAILV---------EENQLKLAFRFYRHMREIGI 151 (485)
Q Consensus 89 ~~l~~~~~~~~~~~------~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~ 151 (485)
...+.-..+.++.- ...+.|+-... .++.|- ...|+..+..+- .+.+++.....|.+++...+
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~ 192 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPM 192 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcc
Confidence 76665544433211 12233333322 234443 333444433221 23334555666666664221
Q ss_pred CCCH------HHHHHHHHHH------HhcCCChHHHHHHHHhhhhC--CCC----CCHHhHHH-----------HHHHHH
Q 011463 152 QPCV------ASLNVLIKAL------CKNSGTMDAAFKIFREMPNR--GCT----PDSYTYGT-----------LINGLC 202 (485)
Q Consensus 152 ~~~~------~~~~~ll~~~------~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~-----------l~~~~~ 202 (485)
..-. ..|..=+... ....--+-.|...++++... |.. .+..+++. .|+.-.
T Consensus 193 ~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~ 272 (660)
T COG5107 193 GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEM 272 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhh
Confidence 1000 0111111100 00112234455555554431 211 12222222 222111
Q ss_pred Hc-----CC-HhH-HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-HHHHcC
Q 011463 203 RL-----GK-IYE-AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM-DGLCKG 274 (485)
Q Consensus 203 ~~-----~~-~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 274 (485)
.. |+ .++ ..-++++.... +......|----.-+...++-+.|+...+..... .|+ .+..+ ..|.-.
T Consensus 273 en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~ 346 (660)
T COG5107 273 ENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELV 346 (660)
T ss_pred cCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhc
Confidence 11 11 111 11122222221 2223333433333444455555565555443322 122 11111 111112
Q ss_pred CChHHHHHHHHHHHh--------------CCC---------------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 275 GCSSQAMELLQMMIS--------------KRH---------------RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 275 ~~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
.+-+.....|+...+ .+. ..=..+|...+..-.+..-++.|..+|-++.+.
T Consensus 347 nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 347 NDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred ccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 222222221211110 000 012344566677777777889999999999888
Q ss_pred C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCC
Q 011463 326 G-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403 (485)
Q Consensus 326 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~ 403 (485)
+ +.++..++++++..++ .|+...|..+|+--+.. -||...|. +..+..+... +-+.|..+|+....+--
T Consensus 427 ~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~------~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 427 GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYK------EKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHH------HHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 7 5677788888887665 67888899998876653 35555443 1333344444 77778888885543211
Q ss_pred c-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 404 S-VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452 (485)
Q Consensus 404 ~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 452 (485)
+ --...|..++.--..-|+...+..+-++|.+. -|-..+......-|
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 1 01457888888888899999999888888875 45444444333333
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.57 Score=39.74 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=77.1
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
.......|++.+|..+|.......+. +...-..++.+|...|+.+.|..++..+....-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34456777778888877777777655 55666677777778888888888877776532111111112233444444444
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC--CCCCCHHhHHHHHHHHHHcC
Q 011463 137 KLAFRFYRHMREIGIQP-CVASLNVLIKALCKNSGTMDAAFKIFREMPNR--GCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 137 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 205 (485)
.+...+-.++.. .| |...-..+...+... |+.+.|.+.+-.+.++ |.. |...-..|+..+.--|
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~-g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLV-GRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 444444444333 23 333333344444444 6666666665555544 222 3444555555555444
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.64 Score=39.45 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=68.6
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|++..|...|+........ +...-..+..+|...|+.+.|..++..+....-.........-+..+.+.....+...+-
T Consensus 148 e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred cchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 7777777777776665333 345555667777777777777777777654321111111112223333333333333333
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCKEG 310 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 310 (485)
...-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.-.|
T Consensus 227 ~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 227 RRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333221 22444444555566666666666666555544311 113444444555444444
No 243
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.19 E-value=0.98 Score=41.31 Aligned_cols=417 Identities=13% Similarity=0.143 Sum_probs=214.8
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH-HhccCChhhHHH
Q 011463 28 VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG-YGRVHRPLDAMR 106 (485)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~ 106 (485)
..+...+|+.+. ..++.|+..|...+..+.+.+.+.+...+|..|+..+|. ++..|.....- |-..-+++.|..
T Consensus 87 ~~rIv~lyr~at----~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 87 PNRIVFLYRRAT----NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHHHH----HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHH
Confidence 345667777777 456679999999999999999899999999999999876 77777765543 333445999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHH----Hc-------C-C-HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH----Hhc
Q 011463 107 VFDKMKEFGCEPTPKSYITVLAILV----EE-------N-Q-LKLAFRFYRHMR-EIGIQPCVASLNVLIKAL----CKN 168 (485)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------~-~-~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~----~~~ 168 (485)
+|.+-++.+ +.++..|....+.-. +. | + -++-.++-+.-. .....++........... ...
T Consensus 162 lflrgLR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~ 240 (568)
T KOG2396|consen 162 LFLRGLRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEK 240 (568)
T ss_pred HHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHH
Confidence 999988864 334555544333211 00 0 0 000011100000 000111111110000000 000
Q ss_pred CCCh-HHHHHHHHhhhhCCCCCCHHhHHHHHH----HHHH---------------cCCHhHHHHHHHHHHHCCCCCChhh
Q 011463 169 SGTM-DAAFKIFREMPNRGCTPDSYTYGTLIN----GLCR---------------LGKIYEAKELFKEMETKACSPTVVT 228 (485)
Q Consensus 169 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~ 228 (485)
.... +.-..+.+.+...+ +-++.++..+.. .+.+ ..+-+....+|++..+. -|+...
T Consensus 241 ~d~~kel~k~i~d~~~~~~-~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm 317 (568)
T KOG2396|consen 241 FDFLKELQKNIIDDLQSKA-PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESM 317 (568)
T ss_pred HHHHHHHHHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHH
Confidence 0000 01111222222222 224444433322 1111 01123344666666543 345566
Q ss_pred HHHHHHHHHccC------CHHHHHHHHHHHHhCC-C-CCCHhhHHHHHHHHHcCCChH-HHHHHHHHHHhCCCCCChhhH
Q 011463 229 YTSLINGLCQSK------SVEEAMRLFEEMRSKG-V-EPNVFTYSSLMDGLCKGGCSS-QAMELLQMMISKRHRPNIVTY 299 (485)
Q Consensus 229 ~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~ 299 (485)
|+..|..|...- .+.....+++...+.+ . +.....|..+...+....... -|..+.... +..+...|
T Consensus 318 ~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~~ 393 (568)
T KOG2396|consen 318 WECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKMW 393 (568)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHHH
Confidence 666666655432 3444455555554432 2 223444555555555544333 233333333 33366666
Q ss_pred HHHHHHHHhcC-CHHH-HHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCC-HHH-HHHHHHHHHHCCCCCCcccccchhhh
Q 011463 300 STLLNGLCKEG-KLQE-AVEILDRMKLQGLKPDAGLYGKIISCFCDIGK-YQE-AANFLDEMVLGGITPNRLTWSLHIRI 375 (485)
Q Consensus 300 ~~l~~~~~~~~-~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (485)
..-+....... +++- -..++..+...-..+....|+... .|+ .+. ...++-.....-..|+..++.
T Consensus 394 ~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~----- 463 (568)
T KOG2396|consen 394 QLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLK----- 463 (568)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehh-----
Confidence 65555554321 2221 222233333321112222333222 222 111 111222222222356666655
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh--cCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHH
Q 011463 376 HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK--KGDIHKSARIVDELVLD-GCLPDEGTWSAVMTA 451 (485)
Q Consensus 376 ~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 451 (485)
+.++..+... ...+|...+..+... ++|+...|..++..-.. .-+...+..+++.|... | .|...|...+.-
T Consensus 464 -s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 464 -SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred -HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHh
Confidence 3555555555 889999999999887 34577888877764322 23488889999999876 5 677788888777
Q ss_pred HHhcCcHHHHHHHHHHHHHc
Q 011463 452 LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~ 471 (485)
=...|+.+.+-.++-++.+.
T Consensus 540 e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hccCCCcccccHHHHHHHHh
Confidence 77889988888887777654
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.19 E-value=0.17 Score=42.26 Aligned_cols=100 Identities=15% Similarity=0.058 Sum_probs=78.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHH
Q 011463 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSIS--VDSLTYSSLITCFCKKGDIHKSARIVDELVLD-G-CLPDEGTWSAVMT 450 (485)
Q Consensus 375 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~p~~~~~~~l~~ 450 (485)
.|+..+..+...++..|...|....+..+. .....+--|..++...|++++|..+|..+.+. + .+--...+.-+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 566888888777999999999999986543 12233444889999999999999999999976 1 1112345666788
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 451 ALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
+..+.|+.++|...|+++++.-+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 889999999999999999997543
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.6 Score=38.31 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETK---ACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|...+-.+.-..++..|.+.++.--+. .-+-+..+...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 444455556667777787777774332 1223455666666666 446666655554
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.10 E-value=0.28 Score=36.80 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=59.8
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 127 (485)
+..+..-.....+.|++++|.+.|+.+...-|.. ...+-..++.+|.+.+++++|...+++.++.....-...|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3344445666678999999999999998875432 34566778889999999999999999998875322234466566
Q ss_pred HHHHHcC
Q 011463 128 AILVEEN 134 (485)
Q Consensus 128 ~~~~~~~ 134 (485)
.+++...
T Consensus 90 ~gL~~~~ 96 (142)
T PF13512_consen 90 RGLSYYE 96 (142)
T ss_pred HHHHHHH
Confidence 5554433
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.05 E-value=0.52 Score=44.34 Aligned_cols=178 Identities=14% Similarity=0.052 Sum_probs=109.9
Q ss_pred HHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH------HHHHHHHHHhc----cCC
Q 011463 31 ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED------IFLSICRGYGR----VHR 100 (485)
Q Consensus 31 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~ 100 (485)
-.-+|+-++ +-+||. +..++....=.|+-+.+++.+....+.+--..+. .|+..+..+.. ..+
T Consensus 176 G~G~f~L~l----SlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 176 GFGLFNLVL----SLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHH----HhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 345566666 233444 3556777777889999999888877643111221 23333333332 456
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHH-HHHHHHHHcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYI-TVLAILVEENQLKLAFRFYRHMREIG--I-QPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
.+.|.++++.+.+. -|+...|. .-.+.+...|++++|.+.|++..... . +.....+--+.-.+.-. ++|++|.
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-~~w~~A~ 325 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-HDWEEAA 325 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-chHHHHH
Confidence 77888999988876 36655554 34466677899999999999765421 1 11223333344444555 8999999
Q ss_pred HHHHhhhhCCCCCCHHhHHHHH-HHHHHcCCH-------hHHHHHHHHHHH
Q 011463 177 KIFREMPNRGCTPDSYTYGTLI-NGLCRLGKI-------YEAKELFKEMET 219 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~~~ 219 (485)
..+..+.+.+- .+...|.-+. .++...|+. ++|.++|.+...
T Consensus 326 ~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999988632 2444444433 344556766 888888888754
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.03 E-value=0.91 Score=39.46 Aligned_cols=165 Identities=11% Similarity=0.063 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHhcCCHH---HHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchh
Q 011463 297 VTYSTLLNGLCKEGKLQ---EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373 (485)
Q Consensus 297 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 373 (485)
.++..++.+|...+..+ +|..+++.+.... +-.+.++..-+..+.+.++.+++.+.+.+|...-.. ....+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~--- 159 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD--- 159 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH---
Confidence 34566677777766544 4555666664432 223455555566666678888888888888775321 223333
Q ss_pred hhHHHHHHHH---hcCChhHHHHHHHHHHhCCCccchh-hHHHH----HHHHHhcCC------HHHHHHHHHHHHhC-CC
Q 011463 374 RIHNTVVQGL---CKTDPNRAFQVYLSMRNRSISVDSL-TYSSL----ITCFCKKGD------IHKSARIVDELVLD-GC 438 (485)
Q Consensus 374 ~~~~~l~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l----~~~~~~~g~------~~~a~~~~~~~~~~-~~ 438 (485)
.++..+ ....+..+...+..+......|... ....+ +....+.++ .+....++....+. +.
T Consensus 160 ----~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~ 235 (278)
T PF08631_consen 160 ----SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGK 235 (278)
T ss_pred ----HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcC
Confidence 333333 3335666666666666544444433 11111 111222222 33444445433322 22
Q ss_pred CCChhhHH---HH----HHHHHhcCcHHHHHHHHHHHHH
Q 011463 439 LPDEGTWS---AV----MTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 439 ~p~~~~~~---~l----~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+.+..+-. ++ +..+.+.+++++|.++|+-.+.
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 33333322 22 2346688999999999987664
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.96 E-value=0.42 Score=34.98 Aligned_cols=65 Identities=23% Similarity=0.321 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011463 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362 (485)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (485)
......+..+..+|+-+.-.++++.+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344555667777777777777777776533 56777777778888888888888888888777764
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.77 Score=37.71 Aligned_cols=207 Identities=9% Similarity=0.032 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH
Q 011463 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200 (485)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (485)
..|.....+|...+++++|...+.+..+-. ..+...|+. ...++.|.-+.+++.+. +--...|.--...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA--------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA--------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH--------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 345555566777788888888777766421 111111111 13445555555555543 1122344555566
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC---C--CCCCHhhHHHHHHHHHcCC
Q 011463 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK---G--VEPNVFTYSSLMDGLCKGG 275 (485)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~ 275 (485)
|..+|.++.|-..+++.-+. .+..+++.|++++.+.... + ...-...+..+...+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 77777777766666554321 1223445555555544321 0 0111233445555666677
Q ss_pred ChHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC---CCCCHHhHHHHHHHHHhcCCH
Q 011463 276 CSSQAMELLQMMISK----RHRPN-IVTYSTLLNGLCKEGKLQEAVEILDRMKLQG---LKPDAGLYGKIISCFCDIGKY 347 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 347 (485)
.+++|-..+.+-... ..-++ -..|...+-.+....++..|...++.-...+ -.-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 777666555443221 11112 1234555556666778889998888743332 233566788888777 56777
Q ss_pred HHHHHHHH
Q 011463 348 QEAANFLD 355 (485)
Q Consensus 348 ~~a~~~~~ 355 (485)
+++..++.
T Consensus 244 E~~~kvl~ 251 (308)
T KOG1585|consen 244 EEIKKVLS 251 (308)
T ss_pred HHHHHHHc
Confidence 77766543
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.89 E-value=0.49 Score=43.85 Aligned_cols=155 Identities=15% Similarity=0.185 Sum_probs=85.0
Q ss_pred HhccCChhhHHHHHH--HHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 95 YGRVHRPLDAMRVFD--KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
..-.|+++++.+..+ ++.. .+ .....+.++..+.+.|..+.|+++-..-. .-+.. ..+. |++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rFeL----Al~l-g~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD--------HRFEL----ALQL-GNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHHHH----HHHC-T-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHhHH----HHhc-CCH
Confidence 344566776665554 2221 11 13446667777777777777777643211 11222 2233 777
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 252 (485)
+.|.++.++.. +...|..|.....+.|+++-|++.|.+... +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 77776654433 566788888888888888888877777542 455666677777777777777666
Q ss_pred HhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHH
Q 011463 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286 (485)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (485)
...|- ++....++.-.|+.++..+++..
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 65541 34444455556666666666554
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=95.87 E-value=0.32 Score=44.18 Aligned_cols=85 Identities=9% Similarity=0.038 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCcHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD-EGTWSAVMTALWDRRKMRQAAELL 465 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 465 (485)
+..+|.++.++..+.+.. |+.....+..+....|+.+.|...|++.... .|+ ...|......+.-.|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345566666666666555 6666666666666666677777777777665 343 334555555566677777777777
Q ss_pred HHHHHcCCC
Q 011463 466 LLELMNKCV 474 (485)
Q Consensus 466 ~~~~~~~~~ 474 (485)
+++++.++.
T Consensus 396 ~~alrLsP~ 404 (458)
T PRK11906 396 DKSLQLEPR 404 (458)
T ss_pred HHHhccCch
Confidence 776665543
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.87 E-value=0.27 Score=45.50 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHccCCHHHHHHHHH--HhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 19 LQLIRAEKDVNKALVIFD--SATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.+...-.+|++++.+..+ .+. +.+| ..-...++..+.+.|..+.|+++-. |+. .-.....
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll----~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl 329 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLL----PNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELAL 329 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTG----GG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhc----ccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHH
Confidence 344555777777666665 222 1222 4446777777777887777776643 221 2333445
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
+.|+.+.|.++.++. .+...|..|.....+.|+++-|.+.|.+... +..++-.+.-. |+.+...
T Consensus 330 ~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~-g~~~~L~ 393 (443)
T PF04053_consen 330 QLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSST-GDREKLS 393 (443)
T ss_dssp HCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHC-T-HHHHH
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHh-CCHHHHH
Confidence 677777777655433 3566788888888888888888887776543 33343334444 7777777
Q ss_pred HHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
++.+.....| -++....++.-.|+.++..+++.+.
T Consensus 394 kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7766666553 2444455555667777777666553
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.87 E-value=0.56 Score=35.74 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHc
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (485)
..++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3445555555666666666666666553 35556666666666543 2233333331 12333344466666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHH
Q 011463 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202 (485)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (485)
+-++++.-++.++.. +...+..+....++++.|.+++.+-. +...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHH
Confidence 666666666655421 11122222222255666666555411 4445555555443
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.43 Score=41.05 Aligned_cols=156 Identities=10% Similarity=-0.133 Sum_probs=104.3
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc-C--CCCCHhhHHHHHHHHHHcCC
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-G--CEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~ 135 (485)
.+...|++.+|-..++++++.-|. |.-.+...=.+|.-.|+...-...++++... + +|-.......+.-++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345678888888888888887654 6677777778888889888888888888654 2 22222222334445567888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCC---CCHHhHHHHHHHHHHcCCHhHHHH
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT---PDSYTYGTLINGLCRLGKIYEAKE 212 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 212 (485)
+++|++.-++..+.+ +.|.-..+.....+-.+ |++.++.++..+-...-.. .-..-|=...-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~-~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMN-GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhc-chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999888888765 34555555666655555 8888888887665443111 112233334455667788999999
Q ss_pred HHHHH
Q 011463 213 LFKEM 217 (485)
Q Consensus 213 ~~~~~ 217 (485)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 98763
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.81 E-value=0.92 Score=37.77 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDE---GTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
.+.+-|.+.|.+-.|..-+++|++. .+-+. ..+..+..+|.+.|-.++|.+.-.-+-.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 4567889999999999999999987 33333 3345567788999999988876544433
No 257
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.69 E-value=0.74 Score=35.84 Aligned_cols=134 Identities=13% Similarity=0.205 Sum_probs=72.9
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+..+.+.+.+++|....+..++..+.+.|++....+ +...++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 445555566777788888888888888887654433 334444455544444443322 2233344443344332
Q ss_pred CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113455666777778888887777665332 222334455666666665554445544443
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.67 E-value=0.89 Score=36.62 Aligned_cols=84 Identities=13% Similarity=-0.016 Sum_probs=41.4
Q ss_pred cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (485)
.|-+.-|.--|.+.....|+ -+.+||.+.--+...|+++.|.+.|+...+.+. ....+...-.-++.--|++..|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhhHHH
Confidence 33334444444444444443 355666666666666666666666666666431 1122222222222335566666555
Q ss_pred HHHHHH
Q 011463 143 YRHMRE 148 (485)
Q Consensus 143 ~~~~~~ 148 (485)
+.+.-+
T Consensus 156 ~~~fYQ 161 (297)
T COG4785 156 LLAFYQ 161 (297)
T ss_pred HHHHHh
Confidence 555444
No 259
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.60 E-value=1.5 Score=38.75 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... ..+...|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGye------- 241 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYE------- 241 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChH-------
Confidence 44555666677788888877766654 46788888888888888888877665432 11224444
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 433 (485)
.++..+... ...+|..+..++ .+..-+..|.+.|++.+|.+..-+.
T Consensus 242 pFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 242 PFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 666676666 677777766652 1245566778888888887764443
No 260
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.56 E-value=0.49 Score=41.21 Aligned_cols=133 Identities=14% Similarity=0.239 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCC
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVE--EN----QLKLAFRFYRHMREIGI---QPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 171 (485)
+++.+.+++.+.+.|+..+..+|.+....... .. ...++..+|+.|++... .++...+..++.. .. ++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~-~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TS-ED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cc-cc
Confidence 34566788888998888887776554433333 22 35678889999988752 3455556666544 22 44
Q ss_pred h----HHHHHHHHhhhhCCCCCCH--HhHHHHHHHHHHcCC--HhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011463 172 M----DAAFKIFREMPNRGCTPDS--YTYGTLINGLCRLGK--IYEAKELFKEMETKACSPTVVTYTSLINGL 236 (485)
Q Consensus 172 ~----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 236 (485)
. +.+..+|+.+.+.|+..+. ...+.++..+..... ...+.++++.+.+.|+++....|..+.-..
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3 4566777777776665432 333333333322222 346777788888887777766666554433
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.55 E-value=0.029 Score=32.47 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
+|..+..+|...|++++|.++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566666666666666666666654
No 262
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.46 E-value=1.3 Score=37.03 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCCccchhcccc
Q 011463 460 QAAELLLLELMNKCVEAEVDIQNQ 483 (485)
Q Consensus 460 ~A~~~~~~~~~~~~~~~~~~~~~~ 483 (485)
+...++-.++-.+.....++..||
T Consensus 380 dV~~LLV~~ILD~~i~g~Ide~n~ 403 (440)
T KOG1464|consen 380 DVESLLVSCILDDTIDGRIDEVNQ 403 (440)
T ss_pred HHHHHHHHHHhccccccchHHhhh
Confidence 444555555544444444444443
No 263
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=2.7 Score=40.64 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+.... ..-|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~------- 748 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL------- 748 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch-------
Confidence 34444555566677777776665554 46666676667777777777766655544321 22333
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 430 (485)
..+..|.+. +.++|.+++-+.... .....+|.+.|++.+|.++-
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 555555555 666666665544322 13455666666666665543
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.32 E-value=1.7 Score=37.72 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=74.2
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHH-----hHHHHHHHHHhcC-CcchHHHHHHHHhhc----C----CCCCH---
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNS-----TFSLMISKLVSAN-QFRPAEDLLDRVNKE----K----CDITE--- 85 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~----~~~~~--- 85 (485)
.++||.+.|...+.++..... ...|+.. .+..++......+ +++.|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 468999999999999984322 2233321 2333344455666 888888877766543 1 11222
Q ss_pred --HHHHHHHHHHhccCChh---hHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 86 --DIFLSICRGYGRVHRPL---DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 86 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
.++..++.+|...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34556666776666554 344444445332 2333555556666666677777777777777764
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.9 Score=39.23 Aligned_cols=157 Identities=11% Similarity=-0.046 Sum_probs=109.5
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HH-HHHHHHHHhcCC
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA--SL-NVLIKALCKNSG 170 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~-~~ll~~~~~~~~ 170 (485)
...-.|++.+|...++++++. .|.|..++...=.+|.-.|+...-...++++.-. -.++.. .| +-+........|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 344678999999999999875 5677888888888999999999999999988754 113332 22 222222223349
Q ss_pred ChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC---CChhhHHHHHHHHHccCCHHHHHH
Q 011463 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS---PTVVTYTSLINGLCQSKSVEEAMR 247 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~ 247 (485)
-+++|++.-++..+.+.. |.....++...+--.|++.++.++..+-...--. .-..-|=-..-.+...+.++.|+.
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999998887533 7777788888888999999999887764322100 011122223334566689999999
Q ss_pred HHHHHH
Q 011463 248 LFEEMR 253 (485)
Q Consensus 248 ~~~~~~ 253 (485)
+|+.-.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998643
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.16 E-value=2.6 Score=38.83 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 265 SSLMDGLCKGGCSSQAMELLQMMISKRHR-PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
..+..++-+.|+.++|.+.++++.+.... ....+...|+.++...+.+.++..++.+..+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 44555556677777777777776654222 12335556667777777777777777665543
No 267
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.12 E-value=3.9 Score=40.60 Aligned_cols=231 Identities=16% Similarity=0.099 Sum_probs=123.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHh-------hHHHHHH-HHHcCCChHHHHHHHHHHHhC----CCCCChhhHHHHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGVEPNVF-------TYSSLMD-GLCKGGCSSQAMELLQMMISK----RHRPNIVTYSTLL 303 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 303 (485)
.....++.+|..+..++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678999999888876542222221 2333222 234578999999998888765 1233455666777
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHh---HHHH--HHHHHhcCCHH--HHHHHHHHHHHCCCCCCcccccchhhhH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGL---YGKI--ISCFCDIGKYQ--EAANFLDEMVLGGITPNRLTWSLHIRIH 376 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
.+..-.|++++|..+..+..+..-.-+... |..+ ...+...|+.. +....+....... -+....-.+...+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~-l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQH-LEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhcccchhHHHHH
Confidence 778889999999998887655421223322 2222 23355666332 2333333332210 01111111112233
Q ss_pred HHHHHHHhcC--ChhHHHHHHHHHHhCCCccchhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhHHHH
Q 011463 377 NTVVQGLCKT--DPNRAFQVYLSMRNRSISVDSLT--YSSLITCFCKKGDIHKSARIVDELVLDGCL----PDEGTWSAV 448 (485)
Q Consensus 377 ~~l~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~l 448 (485)
..+...+.+. ...++..-++-.....+.|-... +..|+......|+.++|...+.++...... ++...-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 3444444443 22223322332222222222222 236778888999999999999988765322 333333333
Q ss_pred HHHH--HhcCcHHHHHHHHHH
Q 011463 449 MTAL--WDRRKMRQAAELLLL 467 (485)
Q Consensus 449 ~~~~--~~~g~~~~A~~~~~~ 467 (485)
+... ...|+.++|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 3332 367898888877665
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.12 E-value=0.9 Score=33.32 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=78.6
Q ss_pred HhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC
Q 011463 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (485)
.-.|..++..++..+.... .+..-+|-++--....-+-+-..++++.+-+ ..|...-.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~---------------- 70 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCG---------------- 70 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S----------------
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhc----------------
Confidence 3456677777777776653 2444455555444444444444555544422 11111100
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 466 (485)
+......-+-. .+ .+....+..++.....|+-+.-.+++..+.+.+ .++......+..||.+.|+..++-+++.
T Consensus 71 NlKrVi~C~~~---~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 71 NLKRVIECYAK---RN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp -THHHHHHHHH---TT-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHH---hc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 12222221111 11 145667778888899999999999999987543 6788888889999999999999999999
Q ss_pred HHHHcCCCc
Q 011463 467 LELMNKCVE 475 (485)
Q Consensus 467 ~~~~~~~~~ 475 (485)
++-++|...
T Consensus 145 ~ACekG~kE 153 (161)
T PF09205_consen 145 EACEKGLKE 153 (161)
T ss_dssp HHHHTT-HH
T ss_pred HHHHhchHH
Confidence 999988653
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.10 E-value=2.7 Score=38.72 Aligned_cols=149 Identities=15% Similarity=0.184 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (485)
.++.-.-+..+.+.-.+.-++..+ +.|+..+.-.++.. .......++.+++++..+.|-. .+..-- .....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~lg~s~-~~~~~ 243 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----SLGKSQ-FLQHH 243 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----hhchhh-hhhcc
Confidence 445555567777777777777776 34776655555543 1225578888888887765310 100000 00000
Q ss_pred CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHcCCChHHHHHH
Q 011463 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE-PNVFTYSSLMDGLCKGGCSSQAMEL 283 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (485)
|. .++........+-..+-..+..++-+.|+.++|++.++++.+.... ........|+.++...+.+.++..+
T Consensus 244 g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 244 GH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred cc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 00 1111111111111222233445555566666666666666543211 1223444556666666666666666
Q ss_pred HHHHH
Q 011463 284 LQMMI 288 (485)
Q Consensus 284 ~~~~~ 288 (485)
+.+-.
T Consensus 318 L~kYd 322 (539)
T PF04184_consen 318 LAKYD 322 (539)
T ss_pred HHHhc
Confidence 66543
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.93 E-value=0.29 Score=41.64 Aligned_cols=81 Identities=14% Similarity=0.269 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 011463 85 EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-----IGIQPCVASLN 159 (485)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 159 (485)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4567778888888888888888888888765 55778888888888888888888888887764 57888877777
Q ss_pred HHHHHHH
Q 011463 160 VLIKALC 166 (485)
Q Consensus 160 ~ll~~~~ 166 (485)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7666643
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.92 E-value=0.07 Score=29.19 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+|..+...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888888888888888888553
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.83 E-value=0.58 Score=39.29 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCCHHhHHHHHHHHHh-----cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHh
Q 011463 47 RHDNSTFSLMISKLVS-----ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 121 (485)
..|-.+|...+..+.. .+..+-....+..|.+.|+..|..+|+.|+..+-+-.-... .+|++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~----------- 130 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQK----------- 130 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHH-----------
Confidence 4455555555555533 23444455555666666666666666666665543211100 00000
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 168 (485)
..-.| -.+-+-++.++++|...|+.||..+-..++..+.+.
T Consensus 131 ----~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 131 ----VFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred ----HHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence 00001 112334566677777777777777666666666554
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.78 E-value=1 Score=34.55 Aligned_cols=89 Identities=13% Similarity=-0.085 Sum_probs=56.2
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 466 (485)
+.+++..++..+.-..+. ....-..-...+...|++.+|+++|+++.+. .|....-..++..|....+-..=..+-+
T Consensus 25 ~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~Wr~~A~ 101 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSWRRYAD 101 (160)
T ss_pred ChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHHHHHHH
Confidence 888999999988877554 2333333445678899999999999998876 4555545555555544333223344445
Q ss_pred HHHHcCCCccch
Q 011463 467 LELMNKCVEAEV 478 (485)
Q Consensus 467 ~~~~~~~~~~~~ 478 (485)
++++.+..+..+
T Consensus 102 evle~~~d~~a~ 113 (160)
T PF09613_consen 102 EVLESGADPDAR 113 (160)
T ss_pred HHHhcCCChHHH
Confidence 556655444443
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.78 E-value=0.044 Score=29.53 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=18.6
Q ss_pred HHHHHhCCCccchhhHHHHHHHHHhcCCHHHHH
Q 011463 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427 (485)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 427 (485)
|++.++..+. ++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444444 5666666666666666666654
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.77 E-value=0.8 Score=39.98 Aligned_cols=231 Identities=10% Similarity=0.081 Sum_probs=122.0
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHH----hhcC-CCCCHHHHHHHHHH
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV----NKEK-CDITEDIFLSICRG 94 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~~~~l~~~ 94 (485)
.-+..+.+..+|+..|.+.+.... .......+|..+..+..+.|.+++++..--.. .+.. ...--..|..+.++
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~-~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLS-DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999888773211 00112335667777888888887765543221 1110 00012344455555
Q ss_pred HhccCChhhHHHHHHHHHhc-CCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEF-GCEP---TPKSYITVLAILVEENQLKLAFRFYRHMREIGI-----QPCVASLNVLIKAL 165 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~ 165 (485)
+-+.-++.+++.+-..-... |..| --.....+..+....+.++++++.|+...+..- ......+-.+-..+
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 55555555555544433221 2112 112334455666777778888888887664311 11223455555555
Q ss_pred HhcCCChHHHHHHHHhhhhC----CCCCCHH------hHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCC-ChhhHH
Q 011463 166 CKNSGTMDAAFKIFREMPNR----GCTPDSY------TYGTLINGLCRLGKIYEAKELFKEMETK----ACSP-TVVTYT 230 (485)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 230 (485)
.+. .|+++|.-+..+..+. ++. |.. ....+.-++...|...+|.+.-++..+. |-.+ -.....
T Consensus 173 ~~l-~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 173 AQL-KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHH-HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 555 7777776655554332 221 111 1223344556667777776666665332 2111 223345
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 011463 231 SLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 231 ~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
.+.+.|...|+.+.|+.-+++..
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHH
Confidence 56667777777777777666543
No 276
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.75 E-value=0.46 Score=37.65 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCC-----HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHD-----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+-+...|++++|..-|..++. ..|+. ...|..-..++.+.+.++.|++-....++.++. ....+..-..+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale----~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAea 177 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALE----SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEA 177 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHH----hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHH
Confidence 345566666666666666662 22221 123555555666666666666666666665543 33344444556
Q ss_pred HhccCChhhHHHHHHHHHhc
Q 011463 95 YGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~ 114 (485)
|.+...+++|++-|.++.+.
T Consensus 178 yek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh
Confidence 66666666666666666654
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.41 E-value=1.8 Score=33.35 Aligned_cols=71 Identities=18% Similarity=0.045 Sum_probs=37.3
Q ss_pred HHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHc
Q 011463 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133 (485)
Q Consensus 60 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (485)
-.+.++.+++..+++.+.-..|. ....-..-...+...|++.+|+.+|+.+.+.. |....-..|+..|...
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 34556666666666666555443 22333333344556677777777777765542 3333334444444433
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.25 E-value=0.053 Score=29.20 Aligned_cols=22 Identities=5% Similarity=0.288 Sum_probs=9.4
Q ss_pred CCHHhHHHHHHHHHhcCCcchH
Q 011463 48 HDNSTFSLMISKLVSANQFRPA 69 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a 69 (485)
.++.+|..+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3344444444444444444443
No 279
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.23 E-value=2.4 Score=34.27 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
|-+.-|..-|.+..... +.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-+ ++.-.|+++.|.+-+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 33444444444444432 2235667777777788888888888888887764443333333222 233457788777766
Q ss_pred HHHhHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHH
Q 011463 320 DRMKLQGLKPDA--GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396 (485)
Q Consensus 320 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~ 396 (485)
...-... +.|+ ..|--+. -..-++.+|..-+.+--+ ..+...|.. .++..|... ..+...+-..
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~------~iV~~yLgkiS~e~l~~~~~ 223 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGW------NIVEFYLGKISEETLMERLK 223 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhH------HHHHHHHhhccHHHHHHHHH
Confidence 6665543 2222 1222221 123345555544333222 233333430 233333333 3333333222
Q ss_pred HHHhCCC---ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 397 SMRNRSI---SVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 397 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
.....+- ..=..+|-.+...+...|+.++|..+|+-.+..
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2211100 001346667888889999999999999998865
No 280
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.14 E-value=6.5 Score=38.82 Aligned_cols=186 Identities=14% Similarity=0.150 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHH-hcCCcchHHHHHHHHhhcCCCCCHH-----HHHHHHHHHhccCC
Q 011463 29 NKALVIFDSATAEYANGFRHD--NSTFSLMISKLV-SANQFRPAEDLLDRVNKEKCDITED-----IFLSICRGYGRVHR 100 (485)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~ 100 (485)
..|++.++.+.+ ....+|. ..++..++..+. ...+++.|+..+++.....-.++.. .-..++..+.+.+.
T Consensus 38 ~~ai~CL~~~~~--~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 38 ATAIKCLEAVLK--QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 346777777772 1223332 235666677665 7789999999999876554332222 22345666766666
Q ss_pred hhhHHHHHHHHHhcC--CC--CCHhhHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc-CCC
Q 011463 101 PLDAMRVFDKMKEFG--CE--PTPKSYITV-LAILVEENQLKLAFRFYRHMREIG---IQPCVASLNVLIKALCKN-SGT 171 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~--~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~-~~~ 171 (485)
.. |....++..+.- .+ +-...+..+ +..+...+++..|.+.++.+.... ..|....+..++.+.... .+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 55 998888876531 11 112223333 233333479999999998886542 234444444444433321 255
Q ss_pred hHHHHHHHHhhhhCC---------CCCCHHhHHHHHHHH--HHcCCHhHHHHHHHHH
Q 011463 172 MDAAFKIFREMPNRG---------CTPDSYTYGTLINGL--CRLGKIYEAKELFKEM 217 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 217 (485)
.+.+.+.++.+.... -.|...+|..+++.+ ...|++..+...++++
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667777776663321 123455666666654 4567776776666655
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.07 E-value=0.14 Score=27.99 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELV 434 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 434 (485)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999955
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.05 E-value=8.4 Score=39.75 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=14.1
Q ss_pred hHHHHHHHHHccC--CHHHHHHHHHHHH
Q 011463 228 TYTSLINGLCQSK--SVEEAMRLFEEMR 253 (485)
Q Consensus 228 ~~~~ll~~~~~~~--~~~~a~~~~~~~~ 253 (485)
....++.+|.+.+ .+++++.......
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666655 4555555555544
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.05 E-value=0.85 Score=38.94 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 180 (485)
+..-....++..+. .-..++..++..+...|+.+.+.+.++++.... +-+...|..++..+.+. |+...|+..|+
T Consensus 137 f~~WV~~~R~~l~e---~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~-g~~~~ai~~y~ 211 (280)
T COG3629 137 FDEWVLEQRRALEE---LFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVN-GRQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHc-CCchHHHHHHH
Confidence 44444444444332 346678889999999999999999999999875 45778899999999998 99999999998
Q ss_pred hhhh-----CCCCCCHHhHHHHHHHH
Q 011463 181 EMPN-----RGCTPDSYTYGTLINGL 201 (485)
Q Consensus 181 ~~~~-----~~~~~~~~~~~~l~~~~ 201 (485)
.+.+ .|+.|...+........
T Consensus 212 ~l~~~~~edlgi~P~~~~~~~y~~~~ 237 (280)
T COG3629 212 QLKKTLAEELGIDPAPELRALYEEIL 237 (280)
T ss_pred HHHHHhhhhcCCCccHHHHHHHHHHh
Confidence 8876 48999988888777763
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.97 E-value=2.3 Score=33.03 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=9.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHH
Q 011463 195 GTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
..|.-+-.+.|++.+|.++|..+
T Consensus 171 EALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHH
Confidence 33333334444444444444443
No 285
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.82 E-value=2.2 Score=32.39 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHH
Q 011463 134 NQLKLAFRFYRHMR 147 (485)
Q Consensus 134 ~~~~~a~~~~~~~~ 147 (485)
+.......+++.+.
T Consensus 21 ~~~~~l~~yLe~~~ 34 (140)
T smart00299 21 NLLEELIPYLESAL 34 (140)
T ss_pred CcHHHHHHHHHHHH
Confidence 33333334443333
No 286
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.74 E-value=0.79 Score=38.53 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=60.7
Q ss_pred CHHhHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011463 190 DSYTYGTLINGLCRL-----GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 264 (485)
|..+|...+..+... +..+-.-..++.|.+.|+.-|..+|+.|++.+-+..- .|.. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-HH
Confidence 666666666665433 4455555666677777777777777777766543221 1111 11
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011463 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311 (485)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (485)
....-.| -.+-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 129 Q~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111 12334567788888888888888888888888876654
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.63 E-value=1.9 Score=32.61 Aligned_cols=50 Identities=20% Similarity=0.112 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 437 (485)
+++++..++..+.-..++ ....-..-...+...|++++|.++|++..+.+
T Consensus 25 d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 889999999998876554 33333334456788999999999999998873
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.55 E-value=2.5 Score=31.99 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=33.8
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
...++.+++..+++.+.-..|+ ....-..-...+...|++.+|+.+|+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4477777777777777665544 2333333334456778888888888877765
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.54 E-value=3.1 Score=33.11 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
|.+.....|.+++|+.+++...+.++.+ .....-..++...|+.++|+..|++.++.+..++.-
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~ 195 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESDASPAAR 195 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHH
Confidence 4556667777888887777666443211 122334567777888888888888888776444433
No 290
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.50 E-value=0.25 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.|..+..++...|++++|++.++++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34455666666666666666666666643
No 291
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.44 E-value=9.1 Score=38.19 Aligned_cols=227 Identities=17% Similarity=0.104 Sum_probs=125.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCChHHHHHHHHhhhhC----CCCCCHHhHHHHH
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPC-------VASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCTPDSYTYGTLI 198 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 198 (485)
.....++.+|..++.++...--.|+ ...++.+-.......|+++.+.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3467889999999998875422222 1244555444444458999999888776653 2334566777888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHH-----HHHHHccCC--HHHHHHHHHHHHhC---CC---CCCHhhHH
Q 011463 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL-----INGLCQSKS--VEEAMRLFEEMRSK---GV---EPNVFTYS 265 (485)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~~~--~~~a~~~~~~~~~~---~~---~~~~~~~~ 265 (485)
.+..-.|++++|..+..+..+.....+...+... ...+...|. ..+....|...... .. .+-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8899999999999888877654323344333222 223455663 23333333333222 01 11233444
Q ss_pred HHHHHHHcC-CChHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHhHCCCCC----CHHhHHHHH
Q 011463 266 SLMDGLCKG-GCSSQAMELLQMMISKRHRPNIVTY--STLLNGLCKEGKLQEAVEILDRMKLQGLKP----DAGLYGKII 338 (485)
Q Consensus 266 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 338 (485)
.++.++.+. +...++..-+.........|-.... ..++......|+.++|...+.++......+ +..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555551 1122222222222222222222222 356777888999999999998876643222 222222222
Q ss_pred --HHHHhcCCHHHHHHHHHH
Q 011463 339 --SCFCDIGKYQEAANFLDE 356 (485)
Q Consensus 339 --~~~~~~~~~~~a~~~~~~ 356 (485)
......|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 223467888887776655
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.39 E-value=8.2 Score=37.51 Aligned_cols=274 Identities=16% Similarity=0.109 Sum_probs=163.1
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHH-----HHHcCCHhHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHcc
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLING-----LCRLGKIYEAKELFKEMET-------KACSPTVVTYTSLINGLCQS 239 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 239 (485)
...+.++++...+.| +......+..+ +....|.+.|+.+|+.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888876 33333333333 3355789999999998866 44 344566677777764
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----hc
Q 011463 240 K-----SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK-GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC----KE 309 (485)
Q Consensus 240 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 309 (485)
. +.+.|..++...-+.| .|+...+-..+..... ..+...|.++|..+...|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 6778999999998887 3444433222222222 24678999999999988753 22333333332 23
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHH-----Hh
Q 011463 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG-----LC 384 (485)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~ 384 (485)
.+.+.|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|..--...-. .+... ..
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~-------~l~~~~~~~~~~ 448 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAA-------YLLDQSEEDLFS 448 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHH-------HHHHhccccccc
Confidence 47889999999999987 3332222223333433 67777766666665544321111100 11111 11
Q ss_pred c--C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----
Q 011463 385 K--T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK----GDIHKSARIVDELVLDGCLPDEGTWSAVMTALW---- 453 (485)
Q Consensus 385 ~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 453 (485)
. . +...+...+.+....| +......+.+.|..- .+++.|...+.....++ ....|+ +...+-
T Consensus 449 ~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g 521 (552)
T KOG1550|consen 449 RGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEG 521 (552)
T ss_pred cccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcC
Confidence 1 1 4566777777776655 556666666666543 35788888888888764 334444 222111
Q ss_pred hcCcHHHHHHHHHHHHHcC
Q 011463 454 DRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 454 ~~g~~~~A~~~~~~~~~~~ 472 (485)
... +..|.+++.++.+.+
T Consensus 522 ~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEED 539 (552)
T ss_pred cch-hHHHHHHHHHHHhcC
Confidence 223 688888888887754
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.38 E-value=0.26 Score=26.33 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.|..++.++...|++++|+..++++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34555555666666666666666666543
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.29 E-value=3.1 Score=32.35 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=85.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCChHHHHHHHHhhhhCCCCCCHH-hH--
Q 011463 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK-ALCKNSGTMDAAFKIFREMPNRGCTPDSY-TY-- 194 (485)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-- 194 (485)
+...|...+. ++..+..++|+.-|..+.+.|...-+..-..-.. ..... |+...|...|+++-.....|-.. -.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k-gdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK-GDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc-ccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 4445554444 3456677788888888877664332222222222 23344 88888888888887664333322 11
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011463 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 259 (485)
..-...+...|.+++.....+-+-..+-+.-...-..|.-+-.+.|++..|...|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11223456778888888877777655444445555667777788899999999999887653333
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.21 E-value=2.5 Score=33.71 Aligned_cols=63 Identities=6% Similarity=0.216 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT--PKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
..+..+...|.+.|+.+.|++.|.++.+....+. ...+..+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777777777777777777766533222 34456677777777777777777666654
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.11 E-value=1.2 Score=35.46 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPT--VVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.++......+++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777888888888888888888776533322 234566677777778888777777666543
No 297
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=10 Score=37.60 Aligned_cols=148 Identities=15% Similarity=0.160 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH----HHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITED----IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
...-+..+.+..-++-|..+-..-. .+.. .......-+.+.|++++|...|-+-... +.| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 3444666677777777777655332 1233 3333444455678888888777665532 122 22444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
-|....+...--.+++.+.+.|+ .+...-..++..|.+. ++.++..++.+... .|... .-....+..+.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKl-kd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKL-KDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHh-cchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHH
Confidence 55566666677777777777775 3455556677777777 77777666665544 22111 11233445555555555
Q ss_pred HHHHHHHH
Q 011463 209 EAKELFKE 216 (485)
Q Consensus 209 ~a~~~~~~ 216 (485)
+|..+-.+
T Consensus 481 ~a~~LA~k 488 (933)
T KOG2114|consen 481 EAELLATK 488 (933)
T ss_pred HHHHHHHH
Confidence 55554444
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.81 E-value=0.25 Score=26.38 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhc
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
+|..++..+...|++++|++.|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3445555555555555555555555544
No 299
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.71 E-value=5.2 Score=33.36 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=81.2
Q ss_pred CCcchHHHHHHHHhhcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHhc-CCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 011463 64 NQFRPAEDLLDRVNKEKCDI-TEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-GCEPTPKSYITVLAILVEENQLKLAFR 141 (485)
Q Consensus 64 g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (485)
+....+...+.......... ...........+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444443221 2344555555556666666666666555431 113344445555555555555666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHhcCCChHHHHHHHHhhhhCCC--CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011463 142 FYRHMREIGIQPCVASLNVLIK-ALCKNSGTMDAAFKIFREMPNRGC--TPDSYTYGTLINGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (485)
.+.........+.. ....... .+... |+++.+...+........ ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDL-AEALLALGALYEL-GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcch-HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 66665553321111 1111111 23333 556666666555533211 0112222222222344445555555555444
Q ss_pred HCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 219 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
..........+..+...+...++++.+...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 431110123333333444444444444444444443
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.43 E-value=8.2 Score=34.97 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=52.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP---DEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
...+|..++..+.+.|.++.|...+.++...+..+ ........+..+...|+..+|+..++..++.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55678889999999999999999999988753221 3344455677888999999999999998883
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.40 E-value=0.8 Score=39.61 Aligned_cols=90 Identities=8% Similarity=-0.066 Sum_probs=41.8
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
...|.++|.+++|++.|.......+. ++..+..-..+|.+..++..|..--+.....+ ..-..+|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 34455555555555555554444321 44444444445555555554444444333321 11233344444444445555
Q ss_pred HHHHHHHHHHHH
Q 011463 137 KLAFRFYRHMRE 148 (485)
Q Consensus 137 ~~a~~~~~~~~~ 148 (485)
.+|.+-++..++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555554
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.15 E-value=2.7 Score=36.13 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=57.4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 011463 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG---ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404 (485)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 404 (485)
+....+...++..-....+++.+...+-+++... ..|+...+ ..+..+.+.++++++.++..=++-|+-
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~--------~~irlllky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH--------TWIRLLLKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH--------HHHHHHHccChHHHHHHHhCcchhccc
Confidence 3333444444444444556666666665554320 11111111 344444444677777766666667777
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
||..+++.+++.+.+.+++.+|.++...|+..
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777777777766665544
No 303
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.99 E-value=1.8 Score=33.88 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCc----------chHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 28 VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF----------RPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
++.|++.++... ...|.|...++.-..++....++ ++|..-|++++..+|. ...++..+..+|..
T Consensus 7 FE~ark~aea~y----~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAY----AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHH----HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 456666666655 23366666665555555443222 3444455555555544 34555556655544
Q ss_pred c
Q 011463 98 V 98 (485)
Q Consensus 98 ~ 98 (485)
.
T Consensus 82 ~ 82 (186)
T PF06552_consen 82 L 82 (186)
T ss_dssp H
T ss_pred H
Confidence 3
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.93 E-value=5 Score=31.39 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=10.2
Q ss_pred hCCCCCCHHhHHHHHHHHHHcCC
Q 011463 184 NRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
+.+++|+...+..++..+.+.|.
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444444
No 305
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.79 E-value=14 Score=36.45 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=31.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CC-----ChhhHHHHHHH--HHhcCcHHHHHHHHH
Q 011463 417 FCKKGDIHKSARIVDELVLDGC-LP-----DEGTWSAVMTA--LWDRRKMRQAAELLL 466 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~-~p-----~~~~~~~l~~~--~~~~g~~~~A~~~~~ 466 (485)
.+-.|++..|....+.+.+..- .| ....+..++.+ +...|+.+.|...|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3456888889888888876411 11 12233344443 336689999999997
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.77 E-value=0.4 Score=25.50 Aligned_cols=27 Identities=4% Similarity=0.114 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhc
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
+..+...+...|++++|++.|++....
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344444444555555555555444443
No 307
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.72 E-value=6.9 Score=32.57 Aligned_cols=198 Identities=23% Similarity=0.181 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHH-H
Q 011463 158 LNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN-G 235 (485)
Q Consensus 158 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~ 235 (485)
.......+... +.+..+...+...... ........+......+...+++..+.+.+.........+ ......... +
T Consensus 62 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 62 LLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 33333333343 5555555555554431 112234444445555555555566666665555432221 111122222 4
Q ss_pred HHccCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGV--EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (485)
+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 5566666666666666544211 01222233333334556667777777766666522213455556666666666777
Q ss_pred HHHHHHHHHhHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 314 EAVEILDRMKLQGLKPD-AGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 314 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
.|...+....... |+ ...+......+...+..+.+...+.+...
T Consensus 220 ~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 220 EALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777666542 22 33334444444455567777777666655
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.66 E-value=14 Score=35.98 Aligned_cols=245 Identities=14% Similarity=0.103 Sum_probs=142.4
Q ss_pred cchHHHHHHHHhhcCCCCCHHHHHHHHH----H-HhccCChhhHHHHHHHHHh-------cCCCCCHhhHHHHHHHHHHc
Q 011463 66 FRPAEDLLDRVNKEKCDITEDIFLSICR----G-YGRVHRPLDAMRVFDKMKE-------FGCEPTPKSYITVLAILVEE 133 (485)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 133 (485)
...|.++++...+.+. ......+.. + +....+.+.|+..|....+ .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4578888888888753 333322222 2 4466789999999999876 44 444666777777764
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHH----Hc
Q 011463 134 N-----QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC----RL 204 (485)
Q Consensus 134 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 204 (485)
. +.+.|..++.+..+.|. |+.......+........+...|.++|....+.|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 67789999999988873 444433333322222114578999999999988733 33333333332 23
Q ss_pred CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HH---Hc----CCC
Q 011463 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD-GL---CK----GGC 276 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~----~~~ 276 (485)
.+.+.|..++++.-+.| .|....-...+..+.. ++++.+.-.+..+.+.+.+ ...+-...+. .. .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 46889999999998886 3332333333444544 7777777777777666533 2222121111 11 11 124
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhHCC
Q 011463 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCK----EGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 326 (485)
...+...+.+....| +......+...|.. ..+++.|...+......+
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 455556666555543 34444444444432 234667777776666553
No 309
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.23 E-value=1.2 Score=38.51 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=49.3
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 170 (485)
-..-|.+.|.+++|++.|....... +.+++++..-..+|.+...+..|..-....+..+ ..-...|..-..+-... |
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~L-g 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESL-G 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHH-h
Confidence 3445666777777777776665542 2266666666666666666666655555544322 01122333333332233 5
Q ss_pred ChHHHHHHHHhhhhC
Q 011463 171 TMDAAFKIFREMPNR 185 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~ 185 (485)
...+|.+-++..++.
T Consensus 180 ~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhHHHHHhh
Confidence 666666666665554
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.19 E-value=0.57 Score=26.35 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 443 GTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 443 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
.+++.+..+|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35666777777777777777777776653
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.58 E-value=2.4 Score=29.21 Aligned_cols=60 Identities=7% Similarity=0.132 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+..+-+..+......|++.+..+.+++|.+.+|+.-|+++|+-...+ +..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44555566666777889999999999999999999999999877744 2223445655543
No 312
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.56 E-value=3.6 Score=32.88 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=56.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHH
Q 011463 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417 (485)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 417 (485)
.-+...|++++|..-|.+.+.. -|...+-...+ +|..-..++.+. ..+.|+.-..+.++.++. ....+.--..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsI-ly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSI-LYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHH-HHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 3456788999999999888874 23322211001 111222233333 556666666666666443 223333334567
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChh
Q 011463 418 CKKGDIHKSARIVDELVLDGCLPDEG 443 (485)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~p~~~ 443 (485)
.+...+++|++-|+++.+. .|...
T Consensus 179 ek~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh--CcchH
Confidence 7777888888888888875 45544
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.46 E-value=14 Score=34.01 Aligned_cols=128 Identities=12% Similarity=0.059 Sum_probs=86.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.-+..-...||...|-+-...++ ...+.++.........+...|+++.+...+..+...-. ....+...+++...
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~l----r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~-s~~~~~~~~~r~~~ 368 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAAL----RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG-TTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHH----HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc-CCchHHHHHHHhhh
Confidence 33455556788887766666555 23344444445555667889999999998877655422 25567888888889
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
+.|++++|..+-+-|....+. ++..........-..|-++++...++++...+
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred chhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999888876543 33333333333445677888888888887654
No 314
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.46 E-value=11 Score=32.47 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=57.2
Q ss_pred CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HhHCCCCCC
Q 011463 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-RHRPNIVTYSTLLNGLCKEGKLQEAVEILDR-----MKLQGLKPD 330 (485)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~ 330 (485)
..++..+...++..++..+++.+-.+++...... ++..|...|..++......|+..-..++.++ +++.+++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 4566667777788888888888888887776665 5556777788888888888887777666654 234455555
Q ss_pred HHhHHHHHHHH
Q 011463 331 AGLYGKIISCF 341 (485)
Q Consensus 331 ~~~~~~l~~~~ 341 (485)
...-..+-..+
T Consensus 278 ~~L~~~L~~LF 288 (292)
T PF13929_consen 278 DELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHHH
Confidence 55444444333
No 315
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.37 E-value=4.8 Score=32.10 Aligned_cols=126 Identities=15% Similarity=0.111 Sum_probs=87.2
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHH---hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHH--
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNS---TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF-- 88 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-- 88 (485)
.|..++.... .+.+ +.....+++.. .++.+.+ .-..+...+...|+++.|..-++..+... ..+.+
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~----~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~ 126 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQ----ANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKA 126 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHh----hccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHH
Confidence 3555555554 3444 66666666662 2233433 33445678899999999999999888652 23333
Q ss_pred ---HHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 89 ---LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 89 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..|.+.....|.+++|+..++.....+. .......-..++...|+-++|..-|++....+
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3455678889999999999998776431 23334556688999999999999999999875
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.30 E-value=0.86 Score=24.19 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
+|..+...+...|++++|.+.++++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45667777888888888888888887754
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.81 E-value=3.9 Score=37.44 Aligned_cols=117 Identities=15% Similarity=0.013 Sum_probs=69.9
Q ss_pred CChHHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 248 (485)
|++..|.+-+....++ .-.|+ ........+...|+++.+...+....+. +.....+...+++.....|++++|...
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 6766665544444443 22233 3333334466678888887777665443 333556677777777888888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
-+-|....++ ++..........-..|-++++...++++...
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 7777765444 3333333333344566677777777776554
No 318
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.68 E-value=41 Score=38.11 Aligned_cols=318 Identities=14% Similarity=0.059 Sum_probs=170.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCC-CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRH-DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
.+..+-.+.+.+.+|+..+|.-.. ...-.. ....|..+...|...++++...-+...-.. +.. +..-+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~--~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRS--TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHH
Confidence 455677889999999999998431 111111 223344444599999999998888775221 222 33344456
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCChHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL-IKALCKNSGTMDA 174 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~~ 174 (485)
...|++..|...|+++.+.+ ++....++.++......|.+....-..+-.... ..+....++.+ +.+..+. ++++.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l-~qwD~ 1536 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRL-SQWDL 1536 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhh-cchhh
Confidence 67899999999999999875 445778888888888888888777765555433 23334444433 3333455 88887
Q ss_pred HHHHHHhhhhCCCCCCHHhHHH--HHHHHHHcC--CHhHHHHHHHHHHHCCCCC---------ChhhHHHHHHHHHccCC
Q 011463 175 AFKIFREMPNRGCTPDSYTYGT--LINGLCRLG--KIYEAKELFKEMETKACSP---------TVVTYTSLINGLCQSKS 241 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~~~ 241 (485)
....+. .. +..+|.. +.....+.. |.-.-.+..+.+.+.-+.| -...|..++....-.
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-- 1607 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-- 1607 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH--
Confidence 777765 22 2223322 222222222 2111112333332221111 001222222221111
Q ss_pred HHHHHHHHHHHHhCCCCCCH------hhHHHHHHHHHcCCChHHHHHHHHH-HHhCCCC-----CChhhHHHHHHHHHhc
Q 011463 242 VEEAMRLFEEMRSKGVEPNV------FTYSSLMDGLCKGGCSSQAMELLQM-MISKRHR-----PNIVTYSTLLNGLCKE 309 (485)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~ 309 (485)
+-....+... ++.++. .-|..-+..-....+..+-+--+++ +...... --..+|-...+.....
T Consensus 1608 --el~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a 1683 (2382)
T KOG0890|consen 1608 --ELENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA 1683 (2382)
T ss_pred --HHHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc
Confidence 1111111111 112211 1121122211111122222222222 1111111 1345677777778889
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011463 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (485)
|.++.|...+-...+.+ -+..+...+...-..|+...|+.++++..+..
T Consensus 1684 G~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1684 GHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99999988877777664 34556667777888999999999999988654
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.61 E-value=1.9 Score=29.67 Aligned_cols=51 Identities=16% Similarity=0.039 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
|.=++.+-++.+...++.|+.....+.++||.+.+++.-|+++++-+..+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~ 72 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC 72 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 444667777788888889999999999999999999999999999777554
No 320
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.51 E-value=7 Score=33.75 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=78.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHH----------CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHhh
Q 011463 197 LINGLCRLGKIYEAKELFKEMET----------KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFT 263 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 263 (485)
|.++|.....|+.-....-++-. .|.+....+...++..-....+++.+...+-+++... ..++. +
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~ 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-T 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-c
Confidence 45566666666554433322221 2344455566666666666677888888777776431 11111 1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (485)
-.+.++.+.+ -++++++.++..=++-|+-||.++++.+++.+.+.+++.+|..+...|....
T Consensus 104 ~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1223333332 3566888888777788888888888888888888888888888777766543
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.46 E-value=23 Score=34.94 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=72.3
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCC---CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRH---DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
+.-+.+.+.+++|+..-+... +..+ -.......+..+...|++++|-...-.|... +...|...+..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~-----~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI-----GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc-----CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHh
Confidence 344778889999999887765 4444 3446777788889999999999999888864 667788888777
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
...+..... +.-++......++..|..++..+..
T Consensus 434 ~e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 777765443 3333433223467778888877766
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.29 E-value=15 Score=35.10 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=32.4
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 651 grl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 651 GRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred CcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 55555554443322 334455555555555555555555544332 233444444444444444444
Q ss_pred HHHHhC
Q 011463 250 EEMRSK 255 (485)
Q Consensus 250 ~~~~~~ 255 (485)
....+.
T Consensus 716 ~~~~~~ 721 (794)
T KOG0276|consen 716 SLAKKQ 721 (794)
T ss_pred HHHHhh
Confidence 433333
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.28 E-value=1 Score=25.25 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788899999999999999999999875
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.27 E-value=30 Score=36.04 Aligned_cols=77 Identities=19% Similarity=0.149 Sum_probs=41.6
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHh--HHHHHHHHHhcCCH
Q 011463 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL--YGKIISCFCDIGKY 347 (485)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 347 (485)
.+...+.+++|.-.|+..-+. ...+.+|...|++.+|..+..++... .+... -..|..-+...+++
T Consensus 948 hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 948 HLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccc
Confidence 334455566665555543221 23455666667777777666655421 12221 14455566666777
Q ss_pred HHHHHHHHHHH
Q 011463 348 QEAANFLDEMV 358 (485)
Q Consensus 348 ~~a~~~~~~~~ 358 (485)
-+|-++..+..
T Consensus 1016 ~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1016 YEAAKILLEYL 1026 (1265)
T ss_pred hhHHHHHHHHh
Confidence 66666666654
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.12 E-value=1 Score=23.54 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=14.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 448 VMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 448 l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+..++.+.|++++|.+.++++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555566666666666666654
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.03 E-value=0.7 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.136 Sum_probs=18.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 447 AVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 447 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.+..+|...|+.+.|++++++++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777777654
No 327
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.88 E-value=14 Score=31.54 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=74.9
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCC--CCCCHH--------hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHH
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANG--FRHDNS--------TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 88 (485)
++.+.-..|+..|++..++..+..... ...+.. ....-|.+++..+++.++..+.-+--...-+....+.
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 455666788888888888777433110 111111 1222367778888888877766555444333455666
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH-----HHcCCHHHHHHHH
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL-----VEENQLKLAFRFY 143 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 143 (485)
..-|-.|.|.+.+..+.++-......--..+...|..++..| .-.|.+++|+++.
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 666777888888888888777776531112233355555444 3467777777776
No 328
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.76 E-value=6.4 Score=27.55 Aligned_cols=39 Identities=8% Similarity=0.074 Sum_probs=14.9
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHH
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 287 (485)
+..+...++.|++....+.+++|.+.+++..|.++++-+
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333344444444444444444444444444444443
No 329
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.18 E-value=7 Score=27.34 Aligned_cols=63 Identities=8% Similarity=0.110 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+.-+..+-+..+......|++.+..+.+++|.+.+++..|+++|+-...+ +.+....|..+++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 33445556666667778889999999999999999999999999888765 2333336666554
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.12 E-value=12 Score=30.14 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=62.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCcH
Q 011463 382 GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD---GCLPDEGTWSAVMTALWDRRKM 458 (485)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~ 458 (485)
.+.+.+-+.|.+.|-.+...+.--++...-.|...|. ..+.++++.++-+..+. +-.+|...+..|+..+.+.|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3344478899999999987765546666666665554 67999999999998875 3367888999999999999999
Q ss_pred HHHH
Q 011463 459 RQAA 462 (485)
Q Consensus 459 ~~A~ 462 (485)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
No 331
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.04 E-value=16 Score=31.39 Aligned_cols=136 Identities=11% Similarity=0.078 Sum_probs=77.8
Q ss_pred CChHHHHHHHHhhhh-CCCCCCHHhHHHHHHHHHH-cCC-HhHHHHHHHHHH-HCCCCCChhhHHHHHHHHHccCCHHHH
Q 011463 170 GTMDAAFKIFREMPN-RGCTPDSYTYGTLINGLCR-LGK-IYEAKELFKEME-TKACSPTVVTYTSLINGLCQSKSVEEA 245 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a 245 (485)
..+.+|+++|+.... ..+-.|..+...+++.... .+. ...--++.+-+. ..+..++..+...++..+++.+++...
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 455667777763322 1233466666666666655 221 111122222222 223456666777777888888888888
Q ss_pred HHHHHHHHhC-CCCCCHhhHHHHHHHHHcCCChHHHHHHHHH-----HHhCCCCCChhhHHHHHHH
Q 011463 246 MRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQM-----MISKRHRPNIVTYSTLLNG 305 (485)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~ 305 (485)
.++++..... +...|...|..++......|+..-..++... +.+.++..+...-..+-..
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 8877776654 4555777788888888888877766666554 2233454454444444333
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.97 E-value=0.7 Score=24.24 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=10.0
Q ss_pred HHHHHhcCCcchHHHHHHHHhhc
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
+.++.+.|++++|.+.|+++++.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=15 Score=30.48 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011463 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401 (485)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 401 (485)
.+...-+..+++.+|+++|+++....+..+..-|..--.++.+.+..+++.+.-.+...+++..+.
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 334444567888899999998877655555444443333333444445544444445555555544
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.61 E-value=9.7 Score=30.73 Aligned_cols=72 Identities=13% Similarity=-0.039 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHccCCHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK---ACSPTVVTYTSLINGLCQSKSVEEA 245 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a 245 (485)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+..|...+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555443334444444444443 45556666665555433 2244556666666666666666555
No 335
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.47 E-value=32 Score=34.09 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=12.4
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011463 417 FCKKGDIHKSARIVDELV 434 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~ 434 (485)
+...|++++|++.++++.
T Consensus 515 ~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 356788888888777654
No 336
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.39 E-value=0.56 Score=40.59 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=36.3
Q ss_pred hcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHHcCCHHHHH
Q 011463 62 SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT-PKSYITVLAILVEENQLKLAF 140 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 140 (485)
..|.++.|++.|-..++.++. ....+..-..++.+.+++..|+.=++...+.+ || ...|-.--.+..-.|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 344444444444444444322 33333444444444444444444444444421 22 122222222233344455555
Q ss_pred HHHHHHHHcCC
Q 011463 141 RFYRHMREIGI 151 (485)
Q Consensus 141 ~~~~~~~~~~~ 151 (485)
..++...+.++
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 55555444443
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.20 E-value=18 Score=31.04 Aligned_cols=61 Identities=8% Similarity=-0.009 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+++...+.|..+|.+.+|.++.++.+..+ +.+...+..++..+...|+--.|.+.++++-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45566778889999999999999988763 45666677788888999998888877776643
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.88 E-value=10 Score=36.06 Aligned_cols=132 Identities=11% Similarity=0.091 Sum_probs=91.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..++.-+.++|-.++|+++ .+|+.- -.....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 618 t~va~Fle~~g~~e~AL~~------------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALEL------------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhHHhHhhhccchHhhhhc------------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 3455556666666655543 233322 2344568899999998877653 566799999999
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
.+.|++..|.+.|.+... |..|+-.+...|+.+....+-....+.|. +...+ .++... |+++++
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~--~N~AF----~~~~l~-g~~~~C 740 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK--NNLAF----LAYFLS-GDYEEC 740 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc--cchHH----HHHHHc-CCHHHH
Confidence 999999999999987764 45677777888888877777777777762 22222 233344 999999
Q ss_pred HHHHHhhhh
Q 011463 176 FKIFREMPN 184 (485)
Q Consensus 176 ~~~~~~~~~ 184 (485)
.+++..-.+
T Consensus 741 ~~lLi~t~r 749 (794)
T KOG0276|consen 741 LELLISTQR 749 (794)
T ss_pred HHHHHhcCc
Confidence 988876543
No 339
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.50 E-value=0.61 Score=35.68 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=47.1
Q ss_pred HHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 011463 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241 (485)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 241 (485)
+..+.+. +.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 14 i~~~~~~-~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 14 ISAFEER-NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp HHHCTTT-T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHhC-CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 3333343 666666677777766554456667777777777776666666665521 11233445556666666
Q ss_pred HHHHHHHHHHH
Q 011463 242 VEEAMRLFEEM 252 (485)
Q Consensus 242 ~~~a~~~~~~~ 252 (485)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.48 E-value=4.6 Score=32.85 Aligned_cols=75 Identities=13% Similarity=-0.009 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcC--CCCCHhhHHHHHHH
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG--CEPTPKSYITVLAI 129 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 129 (485)
...++.+.+.++..+|+...+.-.+.+|. +...-..+++.++-.|++++|..-++-.-+.. ..+....|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456667777777777777777666554 55666677777777788877776666554431 12334455555544
No 341
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.30 E-value=24 Score=31.52 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=69.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCC------------cchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 011463 45 GFRHDNSTFSLMISKLVSANQ------------FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 112 (485)
..|.|+.+|..++...-..-. .+.-+.+++++++.++. +...+...+..+.+..+.++..+.++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 447788888888765543322 24556778888888664 77788888888888888888888888888
Q ss_pred hcCCCCCHhhHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 011463 113 EFGCEPTPKSYITVLAILVE---ENQLKLAFRFYRHMRE 148 (485)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 148 (485)
... +-+...|...+..... .-.+.....+|.+..+
T Consensus 93 ~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 93 FKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 763 3467777777766544 2245566666665543
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.20 E-value=2.4 Score=22.39 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
.+|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35778889999999999999999998864
No 343
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.87 E-value=27 Score=31.63 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=45.6
Q ss_pred CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP---TVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
...+|..+++.+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677888888888888888888888877643211 233344445566667888888888877776
No 344
>PRK09687 putative lyase; Provisional
Probab=85.50 E-value=24 Score=30.75 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 451 (485)
..+.++...|+. +|+..+.++.+. .||..+-...+.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 344555555553 455555555543 3344444443333
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.50 E-value=1.6 Score=21.62 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=9.9
Q ss_pred HHHHHHhcCcHHHHHHHHH
Q 011463 448 VMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 448 l~~~~~~~g~~~~A~~~~~ 466 (485)
+..++...|++++|...++
T Consensus 7 la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 4445555555555555443
No 346
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.05 E-value=0.45 Score=36.40 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=52.1
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
++..+.+.+.+..+..+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 35556667777777777777776655556777777888888777767776666511 11333455566666666
Q ss_pred HHHHHHHHHHH
Q 011463 136 LKLAFRFYRHM 146 (485)
Q Consensus 136 ~~~a~~~~~~~ 146 (485)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666665543
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.05 E-value=24 Score=30.37 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=46.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (485)
+++.....|..+|.+.+|.++.+.....+ +.+...+-.++..+...|+--.+.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34555677888888888888888888764 55777788888888888887777777766543
No 348
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.05 E-value=2.2 Score=39.01 Aligned_cols=107 Identities=9% Similarity=-0.030 Sum_probs=73.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.-+..+...++++.|+.++.+++ .--+.....|..-..++.+.+++..|+.=+..+++..+. ....|..-..++.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI----~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAI----ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVM 83 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHH----hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHH
Confidence 34555677888888888888888 222334555666667788888888888888888887643 3444555556666
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
+.+.+.+|+..|+..... .|+..-....+.-|
T Consensus 84 ~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred hHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 677777888888777663 57766666666554
No 349
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.97 E-value=23 Score=30.01 Aligned_cols=89 Identities=10% Similarity=0.022 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH-KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 465 (485)
+..+-++.+.++.+.+++ |-.+|..-=......|++. .-+++.+.|.... ..+...|..--+++...+.++.-..+.
T Consensus 93 dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~ 170 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 445555566666655554 5555544333333445554 5556666666532 345556666666666666666666666
Q ss_pred HHHHHcCCCccc
Q 011463 466 LLELMNKCVEAE 477 (485)
Q Consensus 466 ~~~~~~~~~~~~ 477 (485)
.++++.+..+.+
T Consensus 171 ~~Lle~Di~NNS 182 (318)
T KOG0530|consen 171 DELLEEDIRNNS 182 (318)
T ss_pred HHHHHHhhhccc
Confidence 666666554443
No 350
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.93 E-value=29 Score=30.47 Aligned_cols=20 Identities=20% Similarity=0.597 Sum_probs=9.4
Q ss_pred HHHHHHhhhhCCCCCCHHhH
Q 011463 175 AFKIFREMPNRGCTPDSYTY 194 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~ 194 (485)
...+++.+.+.|+.-+..+|
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~ 100 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLY 100 (297)
T ss_pred HHHHHHHHHHhccCccChHH
Confidence 34444555555554444333
No 351
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.86 E-value=24 Score=29.41 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=67.2
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTP-KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
|....++..|+..|.+.+.. .|+. .-|..-+.++.+.++++.+.+--.+.++ +.|+..--...+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 34445667777777666654 3555 4446666677777777777776666666 44666666666655554446777
Q ss_pred HHHHHHHhhhhC----CCCCCHHhHHHHHHHHHHcCCHhHHHHHHH
Q 011463 174 AAFKIFREMPNR----GCTPDSYTYGTLINGLCRLGKIYEAKELFK 215 (485)
Q Consensus 174 ~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (485)
.|+..+.+.... .+++.......|..+--+.-...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 777777766332 233344445555544333333344444433
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.57 E-value=2.8 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDG 437 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 437 (485)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36789999999999999999998654
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.47 E-value=14 Score=29.19 Aligned_cols=108 Identities=10% Similarity=0.106 Sum_probs=57.1
Q ss_pred cchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc---cCC-------hhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHHcC
Q 011463 66 FRPAEDLLDRVNKEKCDITEDIFLSICRGYGR---VHR-------PLDAMRVFDKMKEFGCEPT-PKSYITVLAILVEEN 134 (485)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 134 (485)
++.|.+.++.....+|. |...++.-..++.. ... +++|+.-|++.+.. .|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 45667777776666554 56655544443332 222 34555555555554 354 466666666665433
Q ss_pred ----C-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 135 ----Q-------LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 135 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+ +++|.+.|++.... .|+...|+.-+.... +|-++..++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-------kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-------KAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-------THHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-------hhHHHHHHHHHH
Confidence 2 45566666666653 488888888777642 244455555444
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.27 E-value=27 Score=29.88 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhh-------HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS-------YITVLAILVEENQLKLAFRFYRHMREI----GIQPCVASLN 159 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 159 (485)
+.+-..+.+++++|+..+.++...|+..+..+ ...+...|...|+.....+......+. .-+-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhH-----HHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY-----GTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 160 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
+++..+......++..+.+.....+....-..... ..++..+.+.|.+.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.71 E-value=35 Score=30.49 Aligned_cols=121 Identities=10% Similarity=0.068 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh---cCC
Q 011463 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK---KGD 422 (485)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~ 422 (485)
.+.-+.+++++++. .|+..... -.++..+.+. +.+...+.++++....+. +...|...+..... .-.
T Consensus 47 ~E~klsilerAL~~--np~~~~L~------l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~ 117 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLL------LGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFT 117 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCc
Confidence 45567788888776 34443322 2555555555 888888899999987655 78888888876654 235
Q ss_pred HHHHHHHHHHHHhC------CC------CCC--h---hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 423 IHKSARIVDELVLD------GC------LPD--E---GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 423 ~~~a~~~~~~~~~~------~~------~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
+++...+|.+.++. +. .++ . ..+..+...+.+.|-.+.|+..++-+++.+...|
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 67777777666543 11 011 1 1222334445689999999999999999987443
No 356
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.06 E-value=29 Score=29.00 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=39.7
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChh
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDN-STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (485)
....+..|+.-|.+++ ...|++ .-|..-+..+.+..+++.+..--.+.++..+. .+-....+.........++
T Consensus 22 ~~k~y~~ai~~y~raI-----~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAI-----CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred chhhhchHHHHHHHHH-----hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhcccc
Confidence 3445555555555555 122332 34455555555555555555555555544322 2223333444444555555
Q ss_pred hHHHHHHHH
Q 011463 103 DAMRVFDKM 111 (485)
Q Consensus 103 ~a~~~~~~~ 111 (485)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 555555554
No 357
>PRK10941 hypothetical protein; Provisional
Probab=81.64 E-value=11 Score=32.45 Aligned_cols=71 Identities=8% Similarity=-0.084 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchhcc
Q 011463 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQ 481 (485)
Q Consensus 410 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 481 (485)
.+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--+-.|.+.|.+..|..-++.-++..+.++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 3455667788889999999988888752 3344456666777888899999988888888888777776553
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=81.63 E-value=4.2 Score=25.61 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
++..++.+.+... +=|......++.+|...|++++|.++++++.+.
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344444444332 234444555677777777777777777766553
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.91 E-value=3.8 Score=20.54 Aligned_cols=26 Identities=15% Similarity=-0.017 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 445 WSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 445 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+..+...+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444555555566666655555554
No 360
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.88 E-value=11 Score=26.17 Aligned_cols=24 Identities=8% Similarity=-0.101 Sum_probs=15.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 448 VMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 448 l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+.......|++++|...++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455667777777777776654
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.79 E-value=17 Score=29.78 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=24.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 182 (485)
++.+.+.++..+++...+.-++.+ +.+...-..++..++-. |++++|..-++-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcva-Gdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVA-GDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhc-chHHHHHHHHHHH
Confidence 344444555555555555444433 12333334444444444 5555555444433
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.64 E-value=30 Score=29.62 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=45.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-----
Q 011463 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC----- 307 (485)
Q Consensus 233 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 307 (485)
|.++++.++|.++....-+--+..-+..+.....-|-.|.+.+.+..+.++-...++..-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 456666666666655443333221122233344445556666777666666666655432223333555554443
Q ss_pred hcCCHHHHHHHH
Q 011463 308 KEGKLQEAVEIL 319 (485)
Q Consensus 308 ~~~~~~~a~~~~ 319 (485)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356677776665
No 363
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=79.71 E-value=36 Score=28.72 Aligned_cols=49 Identities=10% Similarity=-0.054 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhC---CCCCChhhHHHHHHH-----HHhcCcHHHHHHHHHHHHHcC
Q 011463 424 HKSARIVDELVLD---GCLPDEGTWSAVMTA-----LWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 424 ~~a~~~~~~~~~~---~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~ 472 (485)
+.|.+.|+++.+. .++|...+...++-. |-..|+.++|.++.++++...
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 5566666665432 257777766554432 235799999999988887764
No 364
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.97 E-value=58 Score=30.68 Aligned_cols=50 Identities=8% Similarity=0.163 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHHh-CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 387 DPNRAFQVYLSMRN-RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 387 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
+.+..+.+..++.. .|...-...+..+-.-|....++++|+++++.+.+.
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 44444555555443 233323444555556666677777777777766654
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.91 E-value=4.8 Score=26.60 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=24.5
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCC-HHhHHHHHHHHHhcCCcchHHHH
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHD-NSTFSLMISKLVSANQFRPAEDL 72 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 72 (485)
.+.+-++|+..|+.+++. ...+++ -.++..++.++...|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k--~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEK--ITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhh--cCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666621 111111 12445555666666666655544
No 366
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.87 E-value=58 Score=30.58 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=123.8
Q ss_pred HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC------HhHHHHHHHHHHHCC-CCC-ChhhHHHHHHHHHccCCHHHHH
Q 011463 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGK------IYEAKELFKEMETKA-CSP-TVVTYTSLINGLCQSKSVEEAM 246 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~ 246 (485)
...+|+...+. -++...|+..|..|...-. ......+++...+.+ ..+ ....|..+...+.......+
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~-- 376 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE-- 376 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH--
Confidence 44566665553 4466667777776654433 333444555544332 222 23445555555544443322
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcC-CChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHH--HHHHHHH
Q 011463 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKG-GCSSQAM-ELLQMMISKRHRPNIVTYSTLLNGLCKEGK-LQE--AVEILDR 321 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--a~~~~~~ 321 (485)
.-..+...++..+...|-.-+....+. .++.-.. +++......-..+....|+... .++ ... -..++..
T Consensus 377 -~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 377 -VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred -HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 222222222344555555545444422 1222221 2222222221111222232222 222 211 1123333
Q ss_pred HhHCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHh---cCChhHHHHHHHH
Q 011463 322 MKLQGLKPDAGL-YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC---KTDPNRAFQVYLS 397 (485)
Q Consensus 322 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~a~~~~~~ 397 (485)
+...+ .++..+ -+.++..+.+.|-..+|...+..+.... +|+...+. .++..-. .++..-+...|+.
T Consensus 451 ~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r-------~miq~e~~~~sc~l~~~r~~yd~ 521 (568)
T KOG2396|consen 451 LLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFR-------KMIQFEKEQESCNLANIREYYDR 521 (568)
T ss_pred HHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHH-------HHHHHHhhHhhcCchHHHHHHHH
Confidence 33333 344444 4567777888999999999999987742 34443333 3333222 2267778888888
Q ss_pred HHh-CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 398 MRN-RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 398 ~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
+.. .| .++..|...+.--...|..+.+-.++.++.+.
T Consensus 522 a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 522 ALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 874 45 37888888887777889888888888777654
No 367
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.80 E-value=1.3e+02 Score=34.60 Aligned_cols=322 Identities=10% Similarity=0.039 Sum_probs=166.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH
Q 011463 125 TVLAILVEENQLKLAFRFYRHM----REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (485)
.+..+-.+.+.+..|...++.- .+.. .....+..+...|... +++|....+...... +...+ .-+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i-~dpDgV~Gv~~~r~a-----~~sl~-~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSI-HDPDGVEGVSARRFA-----DPSLY-QQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhc-CCcchhhhHHHHhhc-----CccHH-HHHHH
Confidence 4445666788888888888874 2211 1222333444466666 888888877764221 22222 33445
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHcCCChHH
Q 011463 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL-MDGLCKGGCSSQ 279 (485)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 279 (485)
....|++..|...|+.+.+.+ ++...+++-++..-...+.+...+...+-..... .+....++.+ +.+--+.++++.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhh
Confidence 667899999999999998863 2346678878877778888888887776665542 3333333332 334456777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHH--HHHHHhcC--CHHHHHHHHHHHhHCCCCC--------C-HHhHHHHHHHHHhcCC
Q 011463 280 AMELLQMMISKRHRPNIVTYSTL--LNGLCKEG--KLQEAVEILDRMKLQGLKP--------D-AGLYGKIISCFCDIGK 346 (485)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~~ 346 (485)
....+. .. +..+|... .....+.. +.-.-.+.++.+.+.-+.| + ...|..++....-..
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e- 1608 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE- 1608 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-
Confidence 766665 22 22223222 22222221 2111112222222211110 0 122333333222111
Q ss_pred HHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHH-HHhC----CCc-cchhhHHHHHHHHHh
Q 011463 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS-MRNR----SIS-VDSLTYSSLITCFCK 419 (485)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~-~~~~----~~~-~~~~~~~~l~~~~~~ 419 (485)
.+...+.+. +..++..+.... .-|..-+..-... ...+-+-.+++ +... +.+ --..+|-...+....
T Consensus 1609 l~~~~~~l~-----~~s~~~~s~~~s-d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1609 LENSIEELK-----KVSYDEDSANNS-DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL 1682 (2382)
T ss_pred HHHHHHHhh-----ccCccccccccc-hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh
Confidence 111111111 123332222110 0000111111111 11111111111 1111 111 134578888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
+|.++.|....-.+.+.+ .| ..+...+..++..|+...|..++++.+++...
T Consensus 1683 aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred cccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999999998887777664 23 34555678899999999999999999977543
No 368
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.55 E-value=37 Score=28.14 Aligned_cols=90 Identities=14% Similarity=0.039 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHh----CCCccc--hhhHHHHHHHHHhcCCH-------HHHHHHHHHHHhCCCCC----ChhhHHH-H
Q 011463 387 DPNRAFQVYLSMRN----RSISVD--SLTYSSLITCFCKKGDI-------HKSARIVDELVLDGCLP----DEGTWSA-V 448 (485)
Q Consensus 387 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~~~p----~~~~~~~-l 448 (485)
+.+.|.+.|.-+.- .+.++. ...+--+.+.|...|+. ..|.+.|++..+..-.| +..+..- +
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 55666665554431 233333 23445566777777774 45666777766553222 2233333 3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 449 MTALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 449 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
+....+.|+.++|.+++.+++..+..+.
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 4456689999999999999999876555
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.80 E-value=10 Score=25.07 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=31.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCcHHHHHHHHHH
Q 011463 419 KKGDIHKSARIVDELVLDGCLPD--EGTWSAVMTALWDRRKMRQAAELLLL 467 (485)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 467 (485)
.....++|+..|+...+.-..|. ..++..++.++...|++.+.+++-..
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888877776632222 12445566777777887777665543
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.66 E-value=21 Score=24.95 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHH
Q 011463 27 DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMR 106 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 106 (485)
..++|..+-+.+. ..+.. ...+-..-+..+...|+|++|..+.+.. +.||...|..+... +.|-.+.+..
T Consensus 20 cHqEA~tIAdwL~---~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~ 89 (115)
T TIGR02508 20 CHQEANTIADWLH---LKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALES 89 (115)
T ss_pred HHHHHHHHHHHHh---cCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHH
Confidence 4566666666665 11211 2222223345566777777777766655 24566666655533 5565566666
Q ss_pred HHHHHHhcC
Q 011463 107 VFDKMKEFG 115 (485)
Q Consensus 107 ~~~~~~~~~ 115 (485)
.+.++...|
T Consensus 90 rl~rla~sg 98 (115)
T TIGR02508 90 RLNRLAASG 98 (115)
T ss_pred HHHHHHhCC
Confidence 666666554
No 371
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=77.56 E-value=96 Score=32.42 Aligned_cols=378 Identities=11% Similarity=0.078 Sum_probs=179.3
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHH----HH---HhcC---CcchHHHHHHHHhhc
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMIS----KL---VSAN---QFRPAEDLLDRVNKE 79 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~---~~~g---~~~~a~~~~~~~~~~ 79 (485)
+-.++|..+-.++...+.+++|+..|+++. ..+|-..+.|....+ .+ ...| .+++|+.-|+.+...
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (932)
T PRK13184 473 ALRVSCLAVPDAFLAEKLYDQALIFYRRIR----ESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG 548 (932)
T ss_pred ceeeecccCcHHHHhhHHHHHHHHHHHHHh----hcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Confidence 346777788899999999999999999998 455544444444332 12 2233 355666666655443
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcC-CCCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011463 80 KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG-CEPTPKSY-ITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157 (485)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (485)
-.. +--|.--.-+|-+.|++++=++.+.-..++- -.|-..-. ..+ ..++.+..... ...+
T Consensus 549 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~----~~~~ 610 (932)
T PRK13184 549 VGA--PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL------------VYRLHESLYKH----RREA 610 (932)
T ss_pred CCC--chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH------------HHHHHHHHHHH----HHHH
Confidence 211 1223333345667777777777666665541 11211110 111 11112211111 1122
Q ss_pred HHHHHHHHHhcC--CChHHHHHHHHhhhhCC-------CCCCHHh-----HHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 011463 158 LNVLIKALCKNS--GTMDAAFKIFREMPNRG-------CTPDSYT-----YGTLINGLCRLGKIYEAKELFKEMETKACS 223 (485)
Q Consensus 158 ~~~ll~~~~~~~--~~~~~a~~~~~~~~~~~-------~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (485)
+..++-++.-.. -...+-.++++.+..+- +.+.+.+ +..++.. -.|..---.++|++....
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--- 685 (932)
T PRK13184 611 LVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSF--WSGFTPFLPELFQRAWDL--- 685 (932)
T ss_pred HHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHH--HhcCchhhHHHHHHHhhc---
Confidence 222222211110 12223344555544431 1112111 1222221 124444445566665543
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCH--------hhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 011463 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK----GVEPNV--------FTYSSLMDGLCKGGCSSQAMELLQMMISKR 291 (485)
Q Consensus 224 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (485)
++..+.....-..+..|.++-+.+....+.+. ..+.+. ..|-.-+.+.....+++++.+.+...
T Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 761 (932)
T PRK13184 686 RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT---- 761 (932)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC----
Confidence 34455555556667888888877777666532 111111 11223345555555666666544432
Q ss_pred CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 011463 292 HRPN--IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD--AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367 (485)
Q Consensus 292 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (485)
+|. ...+..++.-+.-.++.+....+.+.+...-.+.. .......+.+|.-..++++|-+++......-...+.
T Consensus 762 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 839 (932)
T PRK13184 762 -DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEY- 839 (932)
T ss_pred -CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhcccc-
Confidence 222 22333333333444555555555555544321111 123345677888899999999998665433222222
Q ss_pred cccchhhhHHHHHHHHhcC---ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 368 TWSLHIRIHNTVVQGLCKT---DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVD 431 (485)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 431 (485)
... .++.+|.-. +.+.|...|....+..+ =+.+|.. ..|.-.|..++....|+
T Consensus 840 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~ 895 (932)
T PRK13184 840 SEA-------FVLYGCYLALTEDREAAKAHFSGCREDAL--FPRSLDG--DIFDYLGKISDNLSWWE 895 (932)
T ss_pred chH-------HHHHHHHHHhcCchhHHHHHHhhcccccc--Ccchhhc--cccchhccccccccHHH
Confidence 111 333333322 55666666665553322 2233332 23334455444444443
No 372
>PRK09687 putative lyase; Provisional
Probab=76.81 E-value=50 Score=28.78 Aligned_cols=233 Identities=12% Similarity=0.025 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCHHHH
Q 011463 83 ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL----KLAFRFYRHMREIGIQPCVASL 158 (485)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 158 (485)
++..+....+..+...|. ..+...+..+.. .++...-...+.++...|+. .++...+..+.... ++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHH
Confidence 355555556666655554 333333333433 24555555556666666652 34566665553322 455544
Q ss_pred HHHHHHHHhcCCCh-----HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 011463 159 NVLIKALCKNSGTM-----DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233 (485)
Q Consensus 159 ~~ll~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 233 (485)
...+.++... +.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++...-...+
T Consensus 109 ~~A~~aLG~~-~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 109 ASAINATGHR-CKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHhcc-cccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 4444444433 211 122233322222 2244555556666666665 4455555555542 3444444445
Q ss_pred HHHHccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011463 234 NGLCQSK-SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312 (485)
Q Consensus 234 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (485)
.++.+.+ ....+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555432 13345555555543 33555566666677776663 4555554444432 2 233556666666664
Q ss_pred HHHHHHHHHHhHCCCCCCHHhHHHHHHHH
Q 011463 313 QEAVEILDRMKLQGLKPDAGLYGKIISCF 341 (485)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (485)
+|...+..+.+. .+|..+-...+.++
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 566666666653 24555555555444
No 373
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.77 E-value=68 Score=30.28 Aligned_cols=178 Identities=12% Similarity=0.150 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 163 (485)
+.....+++..++.+..+.-...+-.+|..-| -+...+..++.+|... ..+.-..+++++.+.. -+......-+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 44556666666666666666666666766644 4566666777777666 4455666666666644 33344444444
Q ss_pred HHHhcCCChHHHHHHHHhhhhCCCCC--C---HHhHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCCChhhHHHHHHHHH
Q 011463 164 ALCKNSGTMDAAFKIFREMPNRGCTP--D---SYTYGTLINGLCRLGKIYEAKELFKEMETK-ACSPTVVTYTSLINGLC 237 (485)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~ 237 (485)
.+... ++.+.+..+|..+..+-++. + ...|..|... -..+.+....+..++... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 66666666666655431110 1 1233333321 134455555555555443 22223334444445566
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011463 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270 (485)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (485)
...++++|++++..+.+.+ .-|...-..++..
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 6667777777777666654 2344444444443
No 374
>PRK10941 hypothetical protein; Provisional
Probab=76.29 E-value=31 Score=29.73 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcC-CCCCHhhHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG-CEPTPKSYITVLAIL 130 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 130 (485)
...+-.+|.+.++++.|+.+.+.+....|. ++.-+..-.-.|.+.|.+..|..=++...+.- -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 456667788999999999999999998776 77777878888999999999999888887652 123444444444443
No 375
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.06 E-value=24 Score=24.50 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=9.7
Q ss_pred HHHhccCChhhHHHHHHHHH
Q 011463 93 RGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~ 112 (485)
..+...|++++|...+++..
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34444455555555555443
No 376
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.86 E-value=2.4 Score=25.61 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011463 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 448 (485)
+.-++.+.|++++|.+..+.+.+. .|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 444666777777777777777764 5665544443
No 377
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.34 E-value=15 Score=26.90 Aligned_cols=47 Identities=6% Similarity=0.077 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
+..+-+..+..-.+.|++......+++|.+-+|+..|+++|+-...+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555556677788888888888888888888888888877655
No 378
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.20 E-value=26 Score=24.16 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=27.7
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC-CHHHHHHHHHHHhccC
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI-TEDIFLSICRGYGRVH 99 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 99 (485)
|.|...-..+...+...|++++|.+.+-.+.+.+... +...-..++..+...|
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 4556666666667777777777777776666654332 2233344444443333
No 379
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.14 E-value=14 Score=32.42 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=60.6
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC---CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
...|..=+.-|.+..++..|...|.+-++... +.+...|+.-..+..-.|++..++.=-...+..+ +-....|-.-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhh
Confidence 34566667777777788888887777666542 2344556655556666677777777666666543 2234455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 011463 127 LAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
..++....++..|..+.+....
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 5566666666666666665543
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.17 E-value=45 Score=31.93 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=46.9
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011463 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316 (485)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 316 (485)
...|+...|...+.................+.....+.|....|-.++.+.+... ...+-++-.+.+++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3446666666555554433222222333444555555555566666666555543 224445555666666666666666
Q ss_pred HHHHHHhHC
Q 011463 317 EILDRMKLQ 325 (485)
Q Consensus 317 ~~~~~~~~~ 325 (485)
+.|++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 666666554
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.60 E-value=10 Score=34.94 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=80.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
-+..+...+.++.|..++.++++.++. ....|..-..++.+.+++..|+.=+.++++.. +-....|..-..++.+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 345567888999999999999998643 44455555588999999999999888888864 3335566666677778888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALC 166 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 166 (485)
+.+|+..|+.... +.|+..-+...+..+-
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 8899998888877 4588777666666543
No 382
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.50 E-value=32 Score=25.35 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 425 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
+..+-+..+...++.|+.......+.+|.+.+++..|+++++-+..+-..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 45566677777788999999999999999999999999999887766443
No 383
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.44 E-value=50 Score=26.31 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=23.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 168 (485)
.+..|.+.|.+++|.+++++..+. |+......-+..+.+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 345567777777777777777652 4444444444444444
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.86 E-value=35 Score=32.59 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=70.9
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 466 (485)
++..|...+..+....+.-.-+....|.....+.|...+|-.++.+..... ....-++..+..++....+.++|++.++
T Consensus 622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 788888888777655443344556677778888888889999988887664 4455677778899999999999999999
Q ss_pred HHHHcCCCccchh
Q 011463 467 LELMNKCVEAEVD 479 (485)
Q Consensus 467 ~~~~~~~~~~~~~ 479 (485)
.+++.....++.+
T Consensus 701 ~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 701 QALKLTTKCPECE 713 (886)
T ss_pred HHHhcCCCChhhH
Confidence 9999877666553
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.73 E-value=9.1 Score=19.56 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHH
Q 011463 26 KDVNKALVIFDSATAEYANGFRHDNSTFSLMI 57 (485)
Q Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 57 (485)
|+++.|..+|++++ ...+.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l----~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERAL----EKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHH----HHCCCChHHHHHHH
Confidence 35566666666666 22234455554444
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.41 E-value=43 Score=25.13 Aligned_cols=74 Identities=9% Similarity=0.147 Sum_probs=48.3
Q ss_pred ccchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 404 SVDSLTYSSLITCFCKKGD---IHKSARIVDELVLDGCLPD-E-GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 404 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
.++..+--.+.+++.+..+ ..+.+.+++...+.. .|+ . ...-.+.-++.+.+++++++++++.+++..+.++.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3455555566677776654 556777888888632 332 2 233345557888899999999998888877655544
No 387
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.80 E-value=1.2e+02 Score=29.92 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
....+.++.+-+..+......++..|.+.|-.+.|..+.+.+-..- ....-|...+..+.+.|+......+...+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444333355556667777777777777777776654431 122334455555566666555555544444
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.11 E-value=29 Score=28.20 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=15.4
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
|++.+|..++.++...|+.++|.+..+++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555554443
No 389
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.67 E-value=1.5e+02 Score=30.67 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=20.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 166 (485)
+......+-+..+++.+....-.++....+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 4455566666666666665443344444455554444
No 390
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.17 E-value=1.4e+02 Score=30.04 Aligned_cols=102 Identities=12% Similarity=0.022 Sum_probs=58.0
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGCEP---TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 168 (485)
++-+.+.+.+++|++..+..... .| -...+..++..+...|++++|-...-+|.. -+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 44455667777777776665432 33 234566777777778888887777777764 2344454444444443
Q ss_pred CCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
++.. .+..-+.......+...|..++..+..
T Consensus 437 -~~l~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 -DQLT---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred -cccc---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 3332 233333333233456667777766665
No 391
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.06 E-value=1.4e+02 Score=29.98 Aligned_cols=292 Identities=7% Similarity=-0.068 Sum_probs=133.9
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHH--HHHHHHHhcCCCCCHhhHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAM--RVFDKMKEFGCEPTPKSYI 124 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~ 124 (485)
+.+...-...+.+....|+.++|.+....+-..+.. .+..+..++..+.+.|...... +=++.+...| +...-.
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~ 201 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVT 201 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 445555566677777888877777777766655543 4566777777766555443322 1222222222 222212
Q ss_pred HHHHHHHH------------cCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCChHHHHHHHHhhhhCC-CC
Q 011463 125 TVLAILVE------------ENQLKLAFRFYRHMREIGIQPCV---ASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CT 188 (485)
Q Consensus 125 ~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~ 188 (485)
.+...+.. ..+...+...+. .++|+. ......+..+.+ .+.+.|...+....... ..
T Consensus 202 ~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar--~d~~~A~~~~~~~~~~~~~~ 274 (644)
T PRK11619 202 YLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVAR--QDAENARLMIPSLVRAQKLN 274 (644)
T ss_pred HHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHH--hCHHHHHHHHHHHHHhcCCC
Confidence 22221100 001111111100 111222 112223333333 35577777776654332 11
Q ss_pred CC--HHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011463 189 PD--SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266 (485)
Q Consensus 189 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 266 (485)
+. ...+..+.......+...++...+....... .+......-+......++++.+...+..|.... .-...-.--
T Consensus 275 ~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW 351 (644)
T PRK11619 275 EDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYW 351 (644)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHH
Confidence 11 1222333333333322344555555433221 133334444444456666666666666654321 112222334
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhC------------CCC-----C-Chhh--------HHHHHHHHHhcCCHHHHHHHHH
Q 011463 267 LMDGLCKGGCSSQAMELLQMMISK------------RHR-----P-NIVT--------YSTLLNGLCKEGKLQEAVEILD 320 (485)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~~~~~------------~~~-----~-~~~~--------~~~l~~~~~~~~~~~~a~~~~~ 320 (485)
+.+++...|+.++|...|+.+... |.+ + .+.. -..-+..+...|....|...+.
T Consensus 352 ~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~ 431 (644)
T PRK11619 352 QADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWA 431 (644)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHH
Confidence 455555566666666666665321 111 0 0000 0112334556678888888887
Q ss_pred HHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355 (485)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 355 (485)
.+... .+......+...-.+.|.++.++....
T Consensus 432 ~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 432 NLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 77764 244445555555556777776665554
No 392
>PF13934 ELYS: Nuclear pore complex assembly
Probab=66.79 E-value=63 Score=27.10 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=58.1
Q ss_pred HHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 011463 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139 (485)
Q Consensus 60 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (485)
+...+++++|.+.+-.- ......-..++.++...|+...|+.++....-. ..+......++.. ..++.+.+|
T Consensus 88 ~LD~~~~~~A~~~L~~p-----s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHP-----SLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred HhChHhHHHHHHHhCCC-----CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHH
Confidence 35567777777777322 112223335777777788888888888775431 1223333333333 667888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011463 140 FRFYRHMREIGIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 168 (485)
+.+-+...+.. ....+..++..+...
T Consensus 160 f~~~R~~~~~~---~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 160 FSFQRSYPDEL---RRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHHhCchhh---hHHHHHHHHHHHHHH
Confidence 88877766521 244566666666543
No 393
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.78 E-value=51 Score=26.28 Aligned_cols=67 Identities=12% Similarity=0.203 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHhCCCccch--h-----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011463 387 DPNRAFQVYLSMRNRSISVDS--L-----TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR 456 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~--~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 456 (485)
..+.|+.+|+.+.+....|.. . .-...+-.|.+.|.+++|.+++++..+. |+......-+....+..
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 457788888888765443311 1 1123456789999999999999999873 55544444444444433
No 394
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=66.71 E-value=1.5e+02 Score=30.00 Aligned_cols=96 Identities=10% Similarity=0.081 Sum_probs=53.3
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHH---hcCCcchHHHHHHHHhhcCCCCCHHHH
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV---SANQFRPAEDLLDRVNKEKCDITEDIF 88 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~ 88 (485)
..-+-.++.++...|++++....-..|. ...|.++..|...+.... ..+...++..+|+.....-. ++..|
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~----~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw 186 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMS----EIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIW 186 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHH----HhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHH
Confidence 3344556677777777776555555554 344666666666654432 34566667777777665432 33334
Q ss_pred HHHHHHH-------hccCChhhHHHHHHHHHh
Q 011463 89 LSICRGY-------GRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 89 ~~l~~~~-------~~~~~~~~a~~~~~~~~~ 113 (485)
...+... -+.++++....+|.+.+.
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 4333322 223556666666666654
No 395
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=66.20 E-value=91 Score=27.29 Aligned_cols=151 Identities=11% Similarity=0.112 Sum_probs=69.9
Q ss_pred hcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----c
Q 011463 62 SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR----VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----E 133 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 133 (485)
..+++..+.+.+......+ +......+...|.. ..+..+|..+|....+.| .......+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 3445556666666555432 22333333333332 344666777777665544 33334444444443 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----C--CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH----
Q 011463 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN----S--GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR---- 203 (485)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 203 (485)
.+..+|..+|++..+.|..+-......+-..+... . .+...|...+.++...+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 36667777777777666433211122222222110 0 02224555555555544 33333334433322
Q ss_pred cCCHhHHHHHHHHHHHCC
Q 011463 204 LGKIYEAKELFKEMETKA 221 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~ 221 (485)
..++.+|..+|....+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 224556666666655544
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.73 E-value=1.1e+02 Score=28.21 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=9.8
Q ss_pred hcCCHHHHHHHHHHHhHC
Q 011463 308 KEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~ 325 (485)
..+++..|.+++..+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555544
No 397
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=64.99 E-value=59 Score=31.95 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=34.8
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHH
Q 011463 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLIN 199 (485)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 199 (485)
...|..-+..+...++.. ...++.+..+-.-.+......++..|.+. |-.+.+.++.+.+-.+-. ...-|..-+.
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~-~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAEL-GLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 334444444443333222 33444444332223444555666666555 666666666665544311 2234555556
Q ss_pred HHHHcCCHhHHHHHHHHHHH
Q 011463 200 GLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~ 219 (485)
.+.+.|+...+..+-..+.+
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHH-----------------
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66677776666555555543
No 398
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=64.78 E-value=1.5e+02 Score=29.27 Aligned_cols=233 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321 (485)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (485)
.+...++.+.....--.+....|..++..+.... .+.-.++++++.. .. ...+..++++....|-......+.+.
T Consensus 291 ~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~-~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~ 365 (574)
T smart00638 291 VEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLS-EEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQW 365 (574)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-HHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q ss_pred HhHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-C-------hhHHH
Q 011463 322 MKLQGLKP-DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-D-------PNRAF 392 (485)
Q Consensus 322 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-------~~~a~ 392 (485)
+....+.+ .....-..+-.....-..+-...+++-+......+....+....-.+..+++.++.. . -+-..
T Consensus 366 i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~ 445 (574)
T smart00638 366 IKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLK 445 (574)
T ss_pred HHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q ss_pred HHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--CcHHHHHHHHHHHHH
Q 011463 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR--RKMRQAAELLLLELM 470 (485)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 470 (485)
.+.+.+.+.--.-+..--...+.++.+.|. ..++..+..........+...-...+.++.+. ...+++...+-....
T Consensus 446 ~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~ 524 (574)
T smart00638 446 YLHELLQQAVSKGDEEEIQLYLKALGNAGH-PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL 524 (574)
T ss_pred HHHHHHHHHHhcCCchheeeHHHhhhccCC-hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc
Q ss_pred cCCCccchhc
Q 011463 471 NKCVEAEVDI 480 (485)
Q Consensus 471 ~~~~~~~~~~ 480 (485)
+..+++++.+
T Consensus 525 n~~e~~EvRi 534 (574)
T smart00638 525 NRAEPPEVRM 534 (574)
T ss_pred CCCCChHHHH
No 399
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.64 E-value=44 Score=22.76 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHH
Q 011463 70 EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138 (485)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (485)
.++++.+.+.++- +......+-.+-...|+.+.|.+++..+. +| +..|..++.++...|...-
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhh
Confidence 3444444444432 33333333332234455555666665555 32 2344555555555554433
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.08 E-value=22 Score=22.36 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=16.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 330 DAGLYGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
|-.-.-.++.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344455666666777777766666654
No 401
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=62.39 E-value=95 Score=26.18 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=33.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 416 CFCKKGDIHKSARIVDELVLD-GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
.|....++...-.++.+|... --.|+.....+.++.|.+..+...|.+.+..++-.+..+.+.
T Consensus 205 iCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lrd~tf 268 (293)
T KOG3036|consen 205 ICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLRDGTF 268 (293)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhccchH
Confidence 344444455555555555433 113555566666666666666666666666655555554443
No 402
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.10 E-value=1.4e+02 Score=27.90 Aligned_cols=16 Identities=6% Similarity=0.208 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHhCCCc
Q 011463 389 NRAFQVYLSMRNRSIS 404 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~ 404 (485)
+++.+-++.|....+.
T Consensus 297 ~~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 297 EKCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHHhhccC
Confidence 4556666777765444
No 403
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.51 E-value=1.3e+02 Score=27.47 Aligned_cols=58 Identities=7% Similarity=0.011 Sum_probs=37.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 184 (485)
+..+.+.|-+..|.++.+-+......-|+......|..++-..++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4556677777778777777777653335555566666666555777777766665544
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.41 E-value=31 Score=28.02 Aligned_cols=42 Identities=7% Similarity=0.222 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 71 DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
+..++..+. .|++.++..++.++...|+.++|.++..++...
T Consensus 132 ~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 132 EWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444443 467788888888888888888888888888764
No 405
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.15 E-value=34 Score=20.68 Aligned_cols=30 Identities=7% Similarity=-0.081 Sum_probs=21.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 448 VMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 448 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
+.-++.+.|++++|.++++.+++..+.+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 455778888888888888888887655443
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.05 E-value=32 Score=20.25 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=23.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
..+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777777777888877777777666665543
No 407
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.92 E-value=8.3 Score=33.79 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=66.5
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
...|.++.|++.|...++.+ ++....|..-.+++.+.+.+..|++-+....+.+ ||...=...=...-+..|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 35688899999998888875 5667777888888888888888888888887744 55432111111111223888999
Q ss_pred HHHHHhhhhCCCCCCHHhH
Q 011463 176 FKIFREMPNRGCTPDSYTY 194 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~ 194 (485)
...++...+.+..+....+
T Consensus 202 a~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHhccccHHHHHH
Confidence 9899888888765554443
No 408
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.54 E-value=93 Score=27.24 Aligned_cols=69 Identities=13% Similarity=0.267 Sum_probs=52.6
Q ss_pred HHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh----------
Q 011463 351 ANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK---------- 419 (485)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 419 (485)
.++|+.+.+.++.|.-..+. .+.-.+... ...+.+.+|+.+.. |+.-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFR-------WitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il 330 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFR-------WITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERIL 330 (370)
T ss_pred HHHHHHHHhcCCCccchhHH-------HHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHH
Confidence 56888888889999988887 777777777 99999999999986 44447777777763
Q ss_pred cCCHHHHHHHHH
Q 011463 420 KGDIHKSARIVD 431 (485)
Q Consensus 420 ~g~~~~a~~~~~ 431 (485)
.|++..-+++++
T Consensus 331 ~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 331 EGDFTVNMKLLQ 342 (370)
T ss_pred hcchHHHHHHHh
Confidence 466666665554
No 409
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=59.83 E-value=16 Score=19.28 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCCHHhHHH
Q 011463 27 DVNKALVIFDSATAEYANGFRHDNSTFSL 55 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 55 (485)
.++.|..+|+..+ ...|++.+|..
T Consensus 2 E~dRAR~IyeR~v-----~~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFV-----LVHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHH-----HhCCCchHHHH
Confidence 4567777777766 22456655544
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.26 E-value=1.5e+02 Score=27.38 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=9.8
Q ss_pred HHccCCHHHHHHHHHHhh
Q 011463 22 IRAEKDVNKALVIFDSAT 39 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~ 39 (485)
+...+++..|.++|+.+.
T Consensus 141 l~n~~~y~aA~~~l~~l~ 158 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELL 158 (379)
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 334555555555555555
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.23 E-value=58 Score=23.41 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 407 SLTYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 407 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
..-|..|+..|...|..++|++++.+..+
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34689999999999999999999999987
No 412
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.19 E-value=43 Score=31.25 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHH--HhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT-WSAVMTAL--WDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
.+-.|..+++-.|++++|..++...... .+..+. -..++..| .+.|+...|...++++.--...|..
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl--~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~~~~v~~~ 690 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATL--LHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTHVSFVPGR 690 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--hhccccHHHHHHHHHHHHhcCCCcchHHHHHhcccccccCcc
Confidence 4456778889999999999999665543 111111 11233334 3779999998888877655544443
No 413
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.08 E-value=65 Score=24.71 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=11.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCC
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKA 221 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (485)
++..+...++.-.|.++|+.+.+.+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 4444444444444445555444443
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.05 E-value=13 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.466 Sum_probs=22.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011463 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451 (485)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 451 (485)
..|.-.+|-++|++|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 44666778888888888887776 46666554
No 415
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.81 E-value=1.5e+02 Score=27.25 Aligned_cols=175 Identities=14% Similarity=0.104 Sum_probs=82.5
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcC--CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc---------CCCCC
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEK--CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF---------GCEPT 119 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 119 (485)
..+.-+...|...|+++.|.+.|.++...= .+.....|..+|..-.-.|+|........+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456666677777777777777776633221 1123445666666666666666555555444332 13344
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCChHHHHHH-----HHhhhhCCCC
Q 011463 120 PKSYITVLAILVEENQLKLAFRFYRHMREIG------IQPCVASLNVLIKALCKNSGTMDAAFKI-----FREMPNRGCT 188 (485)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~~a~~~-----~~~~~~~~~~ 188 (485)
...+..+...+.+ ++..|.+.|-...... +.|...+....+.+++.- ++-+--+.+ |+...+.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtf-dr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATF-DRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccC-CHHHHHHHHHcchhhhhHHhc---
Confidence 4555555544443 5555554443322111 223333333333333322 222222122 2222222
Q ss_pred CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC-----CCCCChhhHHHHHH
Q 011463 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETK-----ACSPTVVTYTSLIN 234 (485)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~ 234 (485)
.+..+..+...|. +++...+++++++... -+.|.+.+.-.+|+
T Consensus 305 -~Pqlr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 -EPQLREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred -ChHHHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 3444444444443 5666777777766443 23455555544444
No 416
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.60 E-value=59 Score=31.58 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHH
Q 011463 55 LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKM 111 (485)
Q Consensus 55 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 111 (485)
.+...|....+++.|.++++++.+.++. ++.+-..+..+....|.-++|+......
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3334444555555555555555554332 3333333334444445555555544443
No 417
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.97 E-value=1.8e+02 Score=30.95 Aligned_cols=134 Identities=8% Similarity=0.018 Sum_probs=80.2
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
--|..+++.+-+.+-.+.+.++-..++.......|.-+.+++.+.......|.+.+|...+-+-... .........++
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 3466788999999999999999988884322222222446777788888888888887766543321 11234566777
Q ss_pred HHHhccCChh------------hHHH-HHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHH-HHHHHH
Q 011463 93 RGYGRVHRPL------------DAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF-YRHMRE 148 (485)
Q Consensus 93 ~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~ 148 (485)
..+..+|.++ +... +++..-....-.....|+.|-..+...+++.+|-.+ |+...+
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 7777777654 2222 333322222222334456666666677777766554 444333
No 418
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.81 E-value=1.9e+02 Score=28.06 Aligned_cols=55 Identities=5% Similarity=0.053 Sum_probs=31.1
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV-EENQLKLAFRFYRHMR 147 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 147 (485)
....+.|-+..|.++-.-+.+.+..-|+.....+|..|+ +..+++-.+++++...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344556666666666666666543334555555565553 4555666666655553
No 419
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.26 E-value=61 Score=22.32 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=34.8
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHHcCC
Q 011463 73 LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEP-TPKSYITVLAILVEENQ 135 (485)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 135 (485)
++.....+|. |......+...+...|+++.|++.+-.+...+... +...-..++..+.-.|.
T Consensus 11 l~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 11 LEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4444445444 66777777778888888888888777776653222 23344555555544444
No 420
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.82 E-value=1.1e+02 Score=25.31 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=14.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
.....+.|+.++|.+.|.++...+
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344455666666666666666543
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.52 E-value=16 Score=27.17 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=17.0
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011463 204 LGKIYEAKELFKEMETKACSPTVVTYTSLING 235 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 235 (485)
.|.-.+|-.+|++|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34555566666666666666553 4555443
No 422
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.41 E-value=2.4e+02 Score=28.99 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=58.1
Q ss_pred HcCCChHHHHHHHHHHHhCC------CCCChhhHHHHHHHHH---------------hcCCHHHHHHHHHHHhHCCCCCC
Q 011463 272 CKGGCSSQAMELLQMMISKR------HRPNIVTYSTLLNGLC---------------KEGKLQEAVEILDRMKLQGLKPD 330 (485)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~---------------~~~~~~~a~~~~~~~~~~~~~~~ 330 (485)
...|++.+|.+.|+.++-.- ...+..-...++..+. ..+..+.+.++-.-.....+.|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 35789999999998876531 1112233334444331 12334444333333344444443
Q ss_pred H--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 011463 331 A--GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367 (485)
Q Consensus 331 ~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (485)
. -+....+..+.+.+++..|-.+-.++++.+..|...
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 3 345566778899999999999999999877666543
No 423
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.54 E-value=74 Score=22.76 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 104 (485)
....++|..+.+.+. ..+. -...+-...+..+..+|+|++| +..-. ....||...|..|. -.+.|-.+++
T Consensus 19 ~HcH~EA~tIa~wL~---~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~--a~klGL~~~~ 88 (116)
T PF09477_consen 19 HHCHQEANTIADWLE---QEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALC--AWKLGLASAL 88 (116)
T ss_dssp TT-HHHHHHHHHHHH---HTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHH--HHHCT-HHHH
T ss_pred hHHHHHHHHHHHHHH---hCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHH--HHhhccHHHH
Confidence 346677777777777 2222 1222233334566777888777 22111 22235555555544 3366777777
Q ss_pred HHHHHHHHhcC
Q 011463 105 MRVFDKMKEFG 115 (485)
Q Consensus 105 ~~~~~~~~~~~ 115 (485)
...+.++...|
T Consensus 89 e~~l~rla~~g 99 (116)
T PF09477_consen 89 ESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHCT-S
T ss_pred HHHHHHHHhCC
Confidence 77777776554
No 424
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=55.10 E-value=1.5e+02 Score=27.84 Aligned_cols=163 Identities=11% Similarity=0.182 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC------CC---CChhhHHHHHHHH-----
Q 011463 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR------HR---PNIVTYSTLLNGL----- 306 (485)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~---~~~~~~~~l~~~~----- 306 (485)
.+++-+++++.+.+.| .+| ....-+..|.+.+++++|...++.-.+.+ .+ ........++...
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 4677777777777765 233 34455778888888888888888766532 11 0111222222221
Q ss_pred HhcCCHHHHHHHHHHHhHCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHH-------HHHHHCCCCCCcccccchhhhH
Q 011463 307 CKEGKLQEAVEILDRMKLQGLKP---DAGLYGKIISCFCDIGKYQEAANFL-------DEMVLGGITPNRLTWSLHIRIH 376 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
.+.| ...+..+++.+...|+.. ...+|+. -|.+.=-.++++..| ....+.|+..|..+|.
T Consensus 146 vRHG-tpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FG------ 215 (480)
T TIGR01503 146 IRHG-TPDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFG------ 215 (480)
T ss_pred ccCC-CCcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccccc------
Confidence 1112 233455555555554321 1122221 122222333333333 3334567777887776
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH--hCCCccchhhHHHHHHHHHhcCCHH
Q 011463 377 NTVVQGLCKTDPNRAFQVYLSMR--NRSISVDSLTYSSLITCFCKKGDIH 424 (485)
Q Consensus 377 ~~l~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~ 424 (485)
.+...++--...-|..+++.+. ++|++ + +--+|.++|+..
T Consensus 216 -pLtgtLvPPsisiav~ilE~Lla~eqGVk-s------isvgy~Q~Gn~~ 257 (480)
T TIGR01503 216 -PLTGTLVPPSISNAIGIIEGLLAAEQGVK-N------ITVGYGQVGNLT 257 (480)
T ss_pred -CCCCCccChHHHHHHHHHHHHHHHHcCCe-E------EEeccccCCChH
Confidence 3332222224556677777665 45555 1 112456666653
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.83 E-value=70 Score=27.28 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVLD----GC-LPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 469 (485)
...-.+..-|...|++++|.++|+.+... |. .+...+...+..+..+.|+.+..+.+.-+++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 33446778899999999999999998532 32 2334455567777788999998887766554
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.57 E-value=1.8e+02 Score=26.81 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=43.3
Q ss_pred HhHHHHHHHHHHcCCHhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 192 YTYGTLINGLCRLGKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
..+.-+...|..+|+++.|++.|.+.+..- .+.....|..+|..-...|+|........+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456777888888888888888888865431 1123344556666666678888877777776653
No 427
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.14 E-value=2.6e+02 Score=28.69 Aligned_cols=266 Identities=14% Similarity=0.137 Sum_probs=127.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH--HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN--STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
.+=..|...|++++|+++-+.- |+. .++..-+..|.+.+++..|-+++.++.+ .|..+.--
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLK 425 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALK 425 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHH
Confidence 4456788889999888876432 332 2455567788889999999999988743 24444444
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHH-----HHHHH-HcCCHH----HHHHHHHHH--------HHcC-CCCCH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV-----LAILV-EENQLK----LAFRFYRHM--------REIG-IQPCV 155 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~-~~~~~~----~a~~~~~~~--------~~~~-~~~~~ 155 (485)
+....+.+.-..++.+=+++ ++|...+-..+ +..|. +.++.+ ++.+-++.- .... ...+.
T Consensus 426 Fl~~~~~~~L~~~L~KKL~~-lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~ 504 (911)
T KOG2034|consen 426 FLEINQERALRTFLDKKLDR-LTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDE 504 (911)
T ss_pred HHhcCCHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 44455544222333322222 33333332221 22221 122221 222211111 1000 00111
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011463 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235 (485)
Q Consensus 156 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 235 (485)
....+....+... |+.+....+-.-+. .|..++..+...+.+++|++++..-. +...+....-.
T Consensus 505 ~nretv~~l~~~~-~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~ 568 (911)
T KOG2034|consen 505 LNRETVYQLLASH-GRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPE 568 (911)
T ss_pred hhHHHHHHHHHHc-cCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhH
Confidence 1122222222233 66665554433332 25566777788888888888776542 22211111111
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC---CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG---GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (485)
. ....+.+....+....+. .+......++..+.+. .....+..+++-....-...++..++.++..|....+
T Consensus 569 L-i~~~p~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~- 643 (911)
T KOG2034|consen 569 L-ITHSPKETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER- 643 (911)
T ss_pred H-HhcCcHHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc-
Confidence 1 112334444444333332 2333344555555554 3344566666655554444577788888877766433
Q ss_pred HHHHHHHHH
Q 011463 313 QEAVEILDR 321 (485)
Q Consensus 313 ~~a~~~~~~ 321 (485)
+.....++.
T Consensus 644 ~~ll~~le~ 652 (911)
T KOG2034|consen 644 DDLLLYLEI 652 (911)
T ss_pred cchHHHHHH
Confidence 333333333
No 428
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.09 E-value=2.6e+02 Score=28.08 Aligned_cols=338 Identities=9% Similarity=-0.006 Sum_probs=168.8
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 169 (485)
.....+.+.+++...+..+.. .+.+...-.....+....|+.++|....+.+=..|. .....+..++..+.+.
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~- 176 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQS- 176 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHc-
Confidence 344455666777766663211 144566667777778888888777777766654442 3455667777766654
Q ss_pred CChHHHHHHHHhh---hhCCCCCCHHhHHHHHHHH-----------H-HcCCHhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011463 170 GTMDAAFKIFREM---PNRGCTPDSYTYGTLINGL-----------C-RLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234 (485)
Q Consensus 170 ~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~-----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 234 (485)
|.+.... ++.++ ...| +...-..+...+ . -..+...+...+.. ++++...-..++.
T Consensus 177 g~lt~~d-~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~ 247 (644)
T PRK11619 177 GKQDPLA-YLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAV 247 (644)
T ss_pred CCCCHHH-HHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHH
Confidence 4433221 22222 2221 111111121111 0 00112222211111 1122211111111
Q ss_pred HH--HccCCHHHHHHHHHHHHhCC-CCCC--HhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 235 GL--CQSKSVEEAMRLFEEMRSKG-VEPN--VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309 (485)
Q Consensus 235 ~~--~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (485)
++ ....+.+.|..++....... ..+. ......+.......+...++...++...... .+......-+....+.
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHc
Confidence 22 23456788888888875442 2222 1223333333333333667777777654332 2444455556666688
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC--C
Q 011463 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT--D 387 (485)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~ 387 (485)
++++.+...+..|.... .-...-.--+.+++...|+.++|...|+.+.. + .+|. ..+...-... .
T Consensus 326 ~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~----~--~~fY------G~LAa~~Lg~~~~ 392 (644)
T PRK11619 326 GDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ----Q--RGFY------PMVAAQRLGEEYP 392 (644)
T ss_pred cCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc----C--CCcH------HHHHHHHcCCCCC
Confidence 99999988888876532 22344445567777779999999999999743 1 1232 1222111111 1
Q ss_pred hhHH-HHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 011463 388 PNRA-FQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 388 ~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 466 (485)
+... ...-..... . ..-..-+..+...|....|...+..+.+. .+......+.....+.|.++.++....
T Consensus 393 ~~~~~~~~~~~~~~-----~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 393 LKIDKAPKPDSALT-----Q-GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCCCCCCchhhhhc-----c-ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 1000 000000000 0 01122344566778888888888887764 233444445554556777777765554
Q ss_pred H
Q 011463 467 L 467 (485)
Q Consensus 467 ~ 467 (485)
+
T Consensus 464 ~ 464 (644)
T PRK11619 464 A 464 (644)
T ss_pred h
Confidence 3
No 429
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.71 E-value=34 Score=29.76 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011463 407 SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447 (485)
Q Consensus 407 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 447 (485)
...|+..|....+.||+++|+.+++++.+.|+.--..+|..
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 44577889999999999999999999998886654455443
No 430
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.60 E-value=3.2e+02 Score=28.97 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=31.4
Q ss_pred ccccccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhc
Q 011463 5 TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA 63 (485)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 63 (485)
|.-.=..+......+..+...++|.+|+.+.++-.--..--...++..|..-+..+.++
T Consensus 687 NLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~q 745 (928)
T PF04762_consen 687 NLETIYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQ 745 (928)
T ss_pred chhhhccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHh
Confidence 33333344444455667777888888888877543100011134555555555555443
No 431
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.47 E-value=1.8e+02 Score=25.87 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=64.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHH
Q 011463 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210 (485)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 210 (485)
.+..+..+-++.-....+ +.|...+...++.. ....-+.+|.++|++..+.+ ..+|+.- ..+...|..
T Consensus 195 WRERnp~~RI~~A~~ALe--IN~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~----e~~yr~s-qq~qh~~~~--- 262 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALE--INNECATAYVLLAE--EEATTIVDAERLFKQALKAG----ETIYRQS-QQCQHQSPQ--- 262 (556)
T ss_pred HHhcCcHHHHHHHHHHHh--cCchhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHH----HHHHhhH-HHHhhhccc---
Confidence 344444443444444444 33555544444432 11245667888888877652 2233211 111111221
Q ss_pred HHHHHHHHHCCCCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHcCCChHHHHHHHH
Q 011463 211 KELFKEMETKACSPTVVTY--TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF---TYSSLMDGLCKGGCSSQAMELLQ 285 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~ 285 (485)
.+.+.+++ .++.+| ..+..+..+.|+..+|.+.|+++.+. .|-.. ....++.++....-+..+..++-
T Consensus 263 ---~da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 263 ---HEAQLRRD--TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred ---hhhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222332 233333 34555666778888888888877654 12111 12345566655554544444444
Q ss_pred HH
Q 011463 286 MM 287 (485)
Q Consensus 286 ~~ 287 (485)
+.
T Consensus 336 kY 337 (556)
T KOG3807|consen 336 KY 337 (556)
T ss_pred hh
Confidence 43
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.23 E-value=1.1e+02 Score=23.46 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=9.1
Q ss_pred HHHHhccCChhhHHHHHHHHHhc
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
+..+...++.-.|.++++.+.+.
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~ 49 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREE 49 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh
Confidence 33333333334444444444433
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.09 E-value=1.7e+02 Score=25.70 Aligned_cols=70 Identities=17% Similarity=0.324 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----------cCCHHHH
Q 011463 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK----------EGKLQEA 315 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 315 (485)
.++++.+.+.++.|.-..|..+.-.+++.=.+..++.+++.+... +.-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356777777788888888887777778888888888888888763 3336666666653 4566555
Q ss_pred HHHHH
Q 011463 316 VEILD 320 (485)
Q Consensus 316 ~~~~~ 320 (485)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55544
No 434
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.09 E-value=1.6e+02 Score=25.36 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=17.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
++.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5666777777788888887777665
No 435
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.79 E-value=1.6e+02 Score=29.04 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=54.6
Q ss_pred ccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcc------hHHHHHHHHhhcCCC
Q 011463 9 WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR------PAEDLLDRVNKEKCD 82 (485)
Q Consensus 9 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~ 82 (485)
.+.......+..+|..+|++-++.++++..... ..+-+.-...++..++...+.|.++ .|.++++... +.
T Consensus 25 ls~~~~~~sl~eacv~n~~~~rs~~ll~s~~~~-~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln 100 (1117)
T COG5108 25 LSYKSGTASLFEACVYNGDFLRSKQLLKSFIDH-NKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LN 100 (1117)
T ss_pred chhccchHHHHHHHHhcchHHHHHHHHHHHhcC-CcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cC
Confidence 333344457889999999999999999988832 2233333567888899999999775 3555555544 23
Q ss_pred CCHHHHHHHHHH
Q 011463 83 ITEDIFLSICRG 94 (485)
Q Consensus 83 ~~~~~~~~l~~~ 94 (485)
-+..+|..++.+
T Consensus 101 ~d~~t~all~~~ 112 (1117)
T COG5108 101 GDSLTYALLCQA 112 (1117)
T ss_pred CcchHHHHHHHh
Confidence 355556555544
No 436
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=50.51 E-value=61 Score=24.31 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=24.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 439 (485)
|.+..+.++ -+...|+++.|+.+.+.+++.|.+
T Consensus 48 d~Vl~~~mv-W~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 48 DDVLMTVMV-WLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred CchHHhhHh-hhhcccCHHHHHHHHHHHHHcCCC
Confidence 544444444 566889999999999999988754
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.44 E-value=54 Score=28.59 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011463 123 YITVLAILVEENQLKLAFRFYRHMREIGIQ 152 (485)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (485)
|+..|....+.|++++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 456677777777777777777777776643
No 438
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=50.41 E-value=2.9e+02 Score=28.15 Aligned_cols=201 Identities=11% Similarity=0.030 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV---EENQLKLAFRFYRHMREIGIQPCVASLNV 160 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+...+..||..+.+.|++++....-..|.+. .+.++..|..-+.... ..++..++..+|++.+.....++ .|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~--iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVP--IWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccch--HHHH
Confidence 4566777888888888888777777777665 2455666655554332 34667777777777765443222 2222
Q ss_pred HHHHHH------hcCCChHHHHHHHHhhhhC-CCCCC--HHhHHHH---HHHHHHcCCHhHHHHHHHHHHHCCCCCChhh
Q 011463 161 LIKALC------KNSGTMDAAFKIFREMPNR-GCTPD--SYTYGTL---INGLCRLGKIYEAKELFKEMETKACSPTVVT 228 (485)
Q Consensus 161 ll~~~~------~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 228 (485)
.+..+. ...++++....+|.+..+. |...+ ...|... -..|..+-..++...++..-...+ .|..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~~ 266 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDEDT 266 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhhh
Confidence 222222 1225677777777777654 32222 2222222 223333334455566665554443 22222
Q ss_pred HHHHHHHHHc-------cCCHHHHHH-------HHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 229 YTSLINGLCQ-------SKSVEEAMR-------LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 229 ~~~ll~~~~~-------~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
-+.-+.--.+ ..+.+.+.. .|+...+. ..+--..|-.++..+...|++-.-...++++...
T Consensus 267 ~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 267 RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 2111111111 112222222 22222222 1223344566677777788777666666666543
No 439
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.21 E-value=1.1e+02 Score=23.36 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHhhhhCCCCCCHHhHHHH
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREIG-----IQPCVASLNVLIKALCKNSGT-MDAAFKIFREMPNRGCTPDSYTYGTL 197 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (485)
+.++.-....+++.....+++.+.... -..+...++.++..+... .. --.+..+|..+.+.+.+++..-|..+
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnS-sSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNS-SSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccC-hHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455555555555555555555553211 012344566666665444 22 33455566666655556666666666
Q ss_pred HHHHHHc
Q 011463 198 INGLCRL 204 (485)
Q Consensus 198 ~~~~~~~ 204 (485)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665543
No 440
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=50.12 E-value=1.8e+02 Score=25.49 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=40.6
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---C
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN---S 169 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~ 169 (485)
..+++..+...+......+ +......+...|.. ..+..+|.++|+...+.|..+ ....+...+..- .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcc
Confidence 4456667777777666533 22333333333332 334566666666555555221 111122222221 1
Q ss_pred CChHHHHHHHHhhhhCCC
Q 011463 170 GTMDAAFKIFREMPNRGC 187 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~ 187 (485)
.+..+|..+++...+.|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 127 LDLVKALKYYEKAAKLGN 144 (292)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 255566666666655543
No 441
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.06 E-value=33 Score=28.47 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=36.1
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
....+|.+.|.++++++. .-.+.....|-.+...--+.|+++.|.+.+++..+.++
T Consensus 5 ~~~~~D~~aaaely~qal----~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQAL----ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHh----hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 445667777777777766 33344556666666666677777777777777666644
No 442
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.66 E-value=1.1e+02 Score=23.08 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=45.3
Q ss_pred HHHHHHhcC----ChhHHHHHHHHHHh-CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011463 378 TVVQGLCKT----DPNRAFQVYLSMRN-RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG 443 (485)
Q Consensus 378 ~l~~~~~~~----~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 443 (485)
.+..++... +..+.+.+++++.+ ..+.-.....-.|.-++.+.++++.++++.+.+.+. .||..
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~ 105 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNR 105 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcH
Confidence 344444443 67888999999986 333323445556677889999999999999999886 56543
No 443
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.58 E-value=53 Score=19.31 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=7.4
Q ss_pred ChHHHHHHHHhhhhCCCCCC
Q 011463 171 TMDAAFKIFREMPNRGCTPD 190 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~ 190 (485)
-.+++...++.|.+.|+..+
T Consensus 17 lI~~~~~~l~~l~~~g~~is 36 (48)
T PF11848_consen 17 LISEVKPLLDRLQQAGFRIS 36 (48)
T ss_pred ChhhHHHHHHHHHHcCcccC
Confidence 33333333333333333333
No 444
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.50 E-value=1.2e+02 Score=23.29 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011463 195 GTLINGLCRLGKIYEAKELFKEMETKA-----CSPTVVTYTSLINGLCQSKS-VEEAMRLFEEMRSKGVEPNVFTYSSLM 268 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 268 (485)
+.++.-....+++...+.+++.+.... -..+...|..++.+.++... ---+..+|.-+++.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444445555555555555442210 01244556666666655554 334556666666666666777777777
Q ss_pred HHHHcC
Q 011463 269 DGLCKG 274 (485)
Q Consensus 269 ~~~~~~ 274 (485)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 666554
No 445
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.05 E-value=48 Score=27.57 Aligned_cols=54 Identities=13% Similarity=0.037 Sum_probs=27.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.+.|+.+.+.+++.+..+. .+-....|-.+...--+.|+++.|.+.|++.++.+
T Consensus 6 ~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3445555555555555543 12223344444444455555555555555555543
No 446
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.90 E-value=2.3e+02 Score=26.52 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 011463 345 GKYQEAANFLDEMVLGGITP 364 (485)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~ 364 (485)
++.+.|+.++.+|.+.|..|
T Consensus 244 sd~~aal~~l~~~l~~G~d~ 263 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDP 263 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44555555555555544333
No 447
>PRK09857 putative transposase; Provisional
Probab=48.02 E-value=2e+02 Score=25.41 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 410 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
+..++.-....|+.++..++++.+.+. .++......+++.-+.+.|.-+++.+...+|+..|.....+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~I 276 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLADI 276 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 344554445667777777777777665 34444556677777888888888999999999998776544
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.98 E-value=1.2e+02 Score=25.96 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHH
Q 011463 196 TLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 196 ~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555666666666666555
No 449
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.95 E-value=84 Score=29.01 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHH----------------hHHHHHHHHHhcCCcchHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNS----------------TFSLMISKLVSANQFRPAEDLL 73 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~~~a~~~~ 73 (485)
+..|....+++.+...-+-.+..+.++... .+..|+.. +...+++.++-.|++..|++++
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~----~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l 145 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEK----RGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVL 145 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhh----ccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHh
Q ss_pred HHHhhcC-------CCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 011463 74 DRVNKEK-------CDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 74 ~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 112 (485)
+.+.-.. +.-...++-.+.-+|.-.+++.+|.+.|....
T Consensus 146 ~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 146 ENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=47.57 E-value=3e+02 Score=27.49 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=40.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHh---
Q 011463 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCK--- 308 (485)
Q Consensus 233 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--- 308 (485)
...+.-.|.++.|.+.+-. ..+...+..++...+..|.-.+-.+... ..+..... .|.+.-+..++..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445566888988888876 2223456666655555444322222211 22222211 1122557777877765
Q ss_pred cCCHHHHHHHHHHHhHC
Q 011463 309 EGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 309 ~~~~~~a~~~~~~~~~~ 325 (485)
..++.+|...+-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45788888888766654
No 451
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.50 E-value=90 Score=21.36 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=19.1
Q ss_pred hcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 011463 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349 (485)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (485)
..|+.+.|..++..+. .| +..|..++.++...|.-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhh
Confidence 3455566666665555 32 2345555555555554433
No 452
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.72 E-value=51 Score=28.76 Aligned_cols=77 Identities=10% Similarity=0.165 Sum_probs=45.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH-HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHH
Q 011463 46 FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS-ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124 (485)
Q Consensus 46 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 124 (485)
.+.|+..|...+....+.|.+.+...++.++.+.+|. +++.|.. --.-+...++++.+..+|.+-...+ +.++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 3456666666666666666677777777777766654 5665554 2233445566777777776666554 23344443
No 453
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=45.83 E-value=1.1e+02 Score=21.73 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 466 (485)
..++|..+-+-+...+-. ...+--+-+..+.+.|++++|..+.+.. ..||...|.++. -.+.|-.+++...+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHH
Confidence 456666666655554321 2222223345677899999999988776 379999888763 367887777777776
Q ss_pred HHHHcC
Q 011463 467 LELMNK 472 (485)
Q Consensus 467 ~~~~~~ 472 (485)
++-..|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 666654
No 454
>PRK14700 recombination factor protein RarA; Provisional
Probab=45.26 E-value=2.2e+02 Score=25.12 Aligned_cols=179 Identities=13% Similarity=0.084 Sum_probs=93.0
Q ss_pred ChHHHHHHHHHHHhC----C---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHH
Q 011463 276 CSSQAMELLQMMISK----R---HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQ 348 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (485)
..+....++++.... + +..+......++. ...||...|+..++.+.......+. . .+ ..+
T Consensus 40 ~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~--~a~GDaR~aLN~LE~a~~~~~~~~~-~---~i-------t~~ 106 (300)
T PRK14700 40 SLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN--YNEGDCRKILNLLERMFLISTRGDE-I---YL-------NKE 106 (300)
T ss_pred CHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH--hcCCHHHHHHHHHHHHHhhccccCC-C---cc-------CHH
Confidence 355667777777653 1 2344555555554 3468888888888875531100000 0 00 011
Q ss_pred HHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCC-----H
Q 011463 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD-----I 423 (485)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~ 423 (485)
...+.+.+-.-.--......|. +.+++......+|++.|+-++-+|++.|-+|....=..++.+.-.-|. .
T Consensus 107 ~~~~~~~~~~~~yDk~gd~HYd----~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al 182 (300)
T PRK14700 107 LFDQAVGETSRDFHREGKEFYE----QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQAL 182 (300)
T ss_pred HHHHHHhHHHhcccCCcchhHH----HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHH
Confidence 1222221111000011122332 222333333333999999999999999988777777777777776674 3
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHH---HHHHHHHHHHHc
Q 011463 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMR---QAAELLLLELMN 471 (485)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~ 471 (485)
.-|...++.....|.+--...+...+--++.+-+-. .|+.-..+.+++
T Consensus 183 ~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~A~~~v~~ 233 (300)
T PRK14700 183 RVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKS 233 (300)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHh
Confidence 345666666666675444444554444455444444 444444444444
No 455
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.20 E-value=1.9e+02 Score=24.42 Aligned_cols=18 Identities=11% Similarity=0.292 Sum_probs=13.3
Q ss_pred HHccCCHHHHHHHHHHhh
Q 011463 22 IRAEKDVNKALVIFDSAT 39 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~ 39 (485)
+.-.+.+++|-++|.++-
T Consensus 24 fgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA 41 (288)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 455568888888888765
No 456
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=44.95 E-value=2.7e+02 Score=30.10 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=61.9
Q ss_pred HHHhcCCcchHHH------HHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH-------hcCCCCCHhhHHH
Q 011463 59 KLVSANQFRPAED------LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK-------EFGCEPTPKSYIT 125 (485)
Q Consensus 59 ~~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ 125 (485)
.....|.+.++.+ ++...-..-.......|..+...+-+.|+.++|+..-.+.. ..+-+-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444555555555 44433222222345566667777777777777776544331 1121223334544
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh
Q 011463 126 VLAILVEENQLKLAFRFYRHMREI-----G-IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN 184 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 184 (485)
+.-.+...++...|...+.+.... | ..|........+..+....++++.|.++++.+.+
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 544445555666666665555432 1 1233333323333332222566666666666554
No 457
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.72 E-value=1.1e+02 Score=21.52 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 70 EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
.+.++++...+....+.....|.-.|++.|+.+.+.+-|+.-+.. -|...+|
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--FPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--FPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--CccchhH
Confidence 344555554444444445555666666666666666666654432 3444444
No 458
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.64 E-value=84 Score=20.07 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=32.4
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (485)
|....++.++..+++..-.++++..+.++.+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4566777888888877778888888888887763 445555544444443
No 459
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.48 E-value=2.6e+02 Score=25.58 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=37.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 011463 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC-DIGKYQEAANFLDEMVL 359 (485)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 359 (485)
+..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4456677778888887777777654435665566666554 56667666666666543
No 460
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.59 E-value=3.7e+02 Score=27.86 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=15.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHH
Q 011463 448 VMTALWDRRKMRQAAELLLLEL 469 (485)
Q Consensus 448 l~~~~~~~g~~~~A~~~~~~~~ 469 (485)
|..-...+|.++.|.+++++-+
T Consensus 912 L~adhvaAGsf~tA~~lL~dqv 933 (1202)
T KOG0292|consen 912 LAADHVAAGSFETAMRLLHDQV 933 (1202)
T ss_pred chhhhhhcCchHHHHHHHHhhh
Confidence 3444667788888888877643
No 461
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=42.50 E-value=1.5e+02 Score=24.17 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG-TWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
...+.++..|...|+++.|-++|.-+++.. ..|.. .|..-+..+.+.+......++++.+..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 455677778888888888888888887652 23333 355555566666665555566666644
No 462
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.26 E-value=3.1e+02 Score=26.09 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=54.1
Q ss_pred HHccCCHHHHHHHHHHHHh---CCCCCC-----HhhHHHHHHHHHcCCChHHHHHHHHHHHh-------CCCCCCh----
Q 011463 236 LCQSKSVEEAMRLFEEMRS---KGVEPN-----VFTYSSLMDGLCKGGCSSQAMELLQMMIS-------KRHRPNI---- 296 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~---- 296 (485)
+.-.|++..|.+++...-- .|...+ -..+|.+.-.+.+.|.+..+..+|..+++ .|..|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4445677777666644321 111111 11224444445556666666666655543 2333211
Q ss_pred -------hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHH
Q 011463 297 -------VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342 (485)
Q Consensus 297 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (485)
.+|+ ..-.|...|++-.|.+.|...... ++.++..|-.+..+|.
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 1122 233456677777777777766554 3456677777777665
No 463
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=42.17 E-value=2.1e+02 Score=23.98 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=9.0
Q ss_pred HHhccCChhhHHHHHHHH
Q 011463 94 GYGRVHRPLDAMRVFDKM 111 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~ 111 (485)
.....|+.++|++....+
T Consensus 73 ~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 73 RAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHhccHHHHHHHHHHh
Confidence 334455555555555444
No 464
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=41.76 E-value=2.3e+02 Score=26.20 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=29.5
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011463 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (485)
+|+.+.-..+|.-....-..|....|..++..|.+.--.......++...+. .+..++...++.|
T Consensus 362 ng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~qlq~fld~v~qq---~dl~~~rsylkly 426 (525)
T KOG3677|consen 362 NGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVSQQ---ADLPTIRSYLKLY 426 (525)
T ss_pred cCChHHHHHHHHHcCccccCCCCcccccccccccccHHHHHHHHHhHHHhhh---ccchHHHHHHHHH
Confidence 4665555555555444434455555555555554433333322333333332 2444444444444
No 465
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.73 E-value=67 Score=20.50 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=12.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
.++.++..+++..-.++++..+.+....|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444433
No 466
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.67 E-value=2.2e+02 Score=24.09 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=54.3
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC-C-----------CCCChhhHHHHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-R-----------HRPNIVTYSTLL 303 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~ 303 (485)
|.+..+..-..++.+-....+++-+.....+++ +...|+..+|+.-++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444444444555445455555554444444 45677887777777665432 1 135666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCC
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKP 329 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (485)
..|.. +++++|.+++..+.+.|+.|
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCH
Confidence 66554 57888888888888877655
No 467
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=41.49 E-value=1e+02 Score=22.22 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=16.2
Q ss_pred hcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 62 SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
..+..-.|.++++.+.+.++.++..+-...+..+...|
T Consensus 12 ~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 12 ESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred hCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33444444444444444444334443333344443333
No 468
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.21 E-value=5.1e+02 Score=27.96 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHH
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT----PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV----ASL 158 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 158 (485)
-|...++.+-..+-.+.+.++-...++. ++++ ..+++.+.......|.+.+|...+-.- ||. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcL 1057 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHH
Confidence 4566777777777778877777766654 2222 334566666666667666665544321 333 233
Q ss_pred HHHHHHHHhcCCChH------------HHHH-HHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHH
Q 011463 159 NVLIKALCKNSGTMD------------AAFK-IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215 (485)
Q Consensus 159 ~~ll~~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (485)
..++..++.. |.++ +... +++..-+.........|..|-..+...+++.+|-.+.-
T Consensus 1058 RqlvivLfec-g~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1058 RQLVIVLFEC-GELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHHHHhc-cchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 4444444444 4433 3333 22222222222233455555555667778777665443
No 469
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.90 E-value=2.4e+02 Score=24.04 Aligned_cols=102 Identities=9% Similarity=0.126 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH------CCCCCCcccccchhhhHHHHHHHHhcC-----ChhHHHHHHHHHHhCC
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVL------GGITPNRLTWSLHIRIHNTVVQGLCKT-----DPNRAFQVYLSMRNRS 402 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~a~~~~~~~~~~~ 402 (485)
...-..-+.+.|++.+|..-|.+..- ..-.|....|.-+-..-+.++..|+.+ ++-++++.-.+++...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 33334445677777777777666532 122455555542222222333333332 3333444444444443
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
+. +...|---..+.+..=+.++|.+-|....+.
T Consensus 261 ~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 261 PG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred Cc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 33 4444433344444444455555555555543
No 470
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.72 E-value=1.8e+02 Score=23.01 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=8.7
Q ss_pred HcCCHhHHHHHHHHHHHCCC
Q 011463 203 RLGKIYEAKELFKEMETKAC 222 (485)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~ 222 (485)
..++.-.|.++++.+.+.+.
T Consensus 37 ~~~~hlSa~eI~~~L~~~~~ 56 (169)
T PRK11639 37 LQPGAISAYDLLDLLREAEP 56 (169)
T ss_pred hcCCCCCHHHHHHHHHhhCC
Confidence 33334444444444444433
No 471
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=39.45 E-value=3.2e+02 Score=25.36 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (485)
.|+.+.-..+|--....-..|....|..++.-|.+.--.......++...+.. +..++...+..|
T Consensus 362 ng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~qlq~fld~v~qq~---dl~~~rsylkly 426 (525)
T KOG3677|consen 362 NGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVSQQA---DLPTIRSYLKLY 426 (525)
T ss_pred cCChHHHHHHHHHcCccccCCCCcccccccccccccHHHHHHHHHhHHHhhhc---cchHHHHHHHHH
Confidence 47777777777766665556667777777777766554444344444444432 444555555555
No 472
>PRK09857 putative transposase; Provisional
Probab=39.21 E-value=2.6e+02 Score=24.63 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=44.2
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 011463 88 FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC 154 (485)
Q Consensus 88 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (485)
+..++......++.++..++++.+.+. .+.......++..-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555445667777777777777654 333444555666777777777788888999988886544
No 473
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.03 E-value=2.7e+02 Score=27.60 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=58.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHcCCChH------HHHHHHHHHHhCCCCCChhhHHHH
Q 011463 231 SLINGLCQSKSVEEAMRLFEEMRSKG--VEPNVFTYSSLMDGLCKGGCSS------QAMELLQMMISKRHRPNIVTYSTL 302 (485)
Q Consensus 231 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 302 (485)
.++.+|...|++..+..+++.+...+ -..=...+|..++...+.|.++ .+.+++++.. ..-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887652 2223455778888888888754 3334444433 44477788877
Q ss_pred HHHHHhcCCHHHHHHHHHHHhH
Q 011463 303 LNGLCKEGKLQEAVEILDRMKL 324 (485)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~~~ 324 (485)
.++-...-+-....-++..++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765543333334444544443
No 474
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.79 E-value=1e+02 Score=22.57 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 55 LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 55 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
.++..+...+..-.|.++++.+.+.++..+..+.-.-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344555555556666666666666655555555444555555544
No 475
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=38.67 E-value=4.5e+02 Score=26.95 Aligned_cols=82 Identities=13% Similarity=-0.010 Sum_probs=47.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCC--H---HHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD--I---HKSARIVDELVLDGCLPDEGTWSAVMTAL 452 (485)
Q Consensus 378 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 452 (485)
+++......+++.|+..+.+|.+.|.+|....=..++.+.-.-|. . .-|...+.-....|.+--..........+
T Consensus 264 a~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~l 343 (725)
T PRK13341 264 AFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYL 343 (725)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 555555555999999999999999988765554444444444453 2 22444444445557544444444444444
Q ss_pred HhcCcHH
Q 011463 453 WDRRKMR 459 (485)
Q Consensus 453 ~~~g~~~ 459 (485)
+.+-+-.
T Consensus 344 a~apKSn 350 (725)
T PRK13341 344 ATAPKSN 350 (725)
T ss_pred HcCCCcc
Confidence 4443333
No 476
>PRK12798 chemotaxis protein; Reviewed
Probab=38.04 E-value=3.4e+02 Score=25.27 Aligned_cols=192 Identities=13% Similarity=0.048 Sum_probs=104.2
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHH-HcCCHhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCCHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC-RLGKIYEAKELFKEMETKACSPT----VVTYTSLINGLCQSKSVEE 244 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~ 244 (485)
|+.+++.+.+..+.....++....+-.|+.+-. ...++..|+++|+...-. .|- ......-+......|+.++
T Consensus 126 Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 126 GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 888888888888877766777777777766543 456788888888876543 222 2223333445667788777
Q ss_pred HHHHHHHHHhC-CCCCCH-hhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 245 AMRLFEEMRSK-GVEPNV-FTYSSLMDGLCKGGCSSQAMELLQMMISK-RHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321 (485)
Q Consensus 245 a~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (485)
+..+-.+...+ ...|-. ..+..+..++.+.++-..-.. +..++.. ...--...|..+.+.-.-.|+.+.|.-.-++
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66555544433 111111 122233334444443222222 3333332 2222345677777777788888887777777
Q ss_pred HhHCCCCCCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 011463 322 MKLQGLKPDA-----GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366 (485)
Q Consensus 322 ~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 366 (485)
.....-..+. ..|.... -.-..+++++.+.+..+-...+.|.+
T Consensus 283 A~~L~~~~~~~~~ra~LY~aaa--~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 283 ALKLADPDSADAARARLYRGAA--LVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHhccCCCcchHHHHHHHHHH--ccCcccHHHHHHHHhcCChhhCChhh
Confidence 6654311111 1122111 12344577777777766555444443
No 477
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.04 E-value=3.4e+02 Score=26.39 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
+++++.....+...+ ..+.++........+..--.++++.+.+.++......|..++.++...++.+.|.+++.++.+
T Consensus 159 ldiie~~l~~~~d~d--i~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~ 236 (926)
T COG5116 159 LDIIEKYLSDGNDCD--IINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVK 236 (926)
T ss_pred HHHHHHHHhCCCccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHh
Confidence 345555666553333 333344333332112222234444444444322222344566777777888888888888765
Q ss_pred C
Q 011463 220 K 220 (485)
Q Consensus 220 ~ 220 (485)
.
T Consensus 237 e 237 (926)
T COG5116 237 E 237 (926)
T ss_pred h
Confidence 4
No 478
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.00 E-value=3e+02 Score=24.62 Aligned_cols=174 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC-------------CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC-CCCCCHHhHHHHHH
Q 011463 134 NQLKLAFRFYRHMREIGIQP-------------CVASLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLIN 199 (485)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 199 (485)
++.+....++..+++.+..| |...++.+... .. ..+++-.+..+...+. |-.--...+.....
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--ne-eki~eld~~iedaeenlGE~ev~ea~~~kae 112 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NE-EKIKELDEKIEDAEENLGESEVREAMLRKAE 112 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q ss_pred HHHHcCCHhHHHHHHHHHHHC----CCCCChhhHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-
Q 011463 200 GLCRLGKIYEAKELFKEMETK----ACSPTVVTYTSLINGLCQSKS-VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK- 273 (485)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 273 (485)
.|++-||.+.|++.+++..+. |.+.|...+..-+..+....+ ..+-++..+.+.+.|-..+..----.-.+...
T Consensus 113 YycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~m 192 (393)
T KOG0687|consen 113 YYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCM 192 (393)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHH
Q ss_pred -CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011463 274 -GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310 (485)
Q Consensus 274 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (485)
..++.+|-.+|-.....-......+|..++.--.-.|
T Consensus 193 svR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g 230 (393)
T KOG0687|consen 193 SVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITG 230 (393)
T ss_pred HHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHh
No 479
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.99 E-value=1.9e+02 Score=23.61 Aligned_cols=59 Identities=3% Similarity=-0.016 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITE-DIFLSICRGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 112 (485)
...++..+.-.|+++.|.++|.-+++.. ++|. ..|..-+..+.+.+.-....+.++.+.
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 3444455555555555555555544432 1222 234444444444444333334444443
No 480
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.60 E-value=75 Score=17.62 Aligned_cols=27 Identities=15% Similarity=0.067 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
++..+...-...+++++|++-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455667777777888888888887765
No 481
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=36.66 E-value=3.2e+02 Score=24.57 Aligned_cols=128 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHH
Q 011463 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKS 426 (485)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 426 (485)
++++..++++....+. |........+..+.+....-...+......+|+.+... .|++++--.-.-+..+..-...+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHHHHHHhhhHHhH
Q ss_pred HHHHHHHHhC-CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 427 ARIVDELVLD-GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 427 ~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
+.+.+-+... ++.--...+..-...+.+.|+.++|...|++++..-..+.+
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
No 482
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.63 E-value=5.2e+02 Score=27.06 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=39.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhH-----HHH---HHHHHhcCCcchHHHHHHHHhhc
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTF-----SLM---ISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~l---~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
...=+..+.+...+++|+.+-+... .|++... ... +--+..+|++++|.+.|+++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~-------~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILD-------SPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccC-------CCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 4445677778888999998888766 2443321 111 12256789999999999988653
No 483
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=36.12 E-value=5.1e+02 Score=26.77 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011463 242 VEEAMRLFEEMR-SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289 (485)
Q Consensus 242 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (485)
.++....++.+. ..++..+......+.. ...|++..++.++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH
Confidence 455555555544 3455555555544443 336778888887776553
No 484
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.12 E-value=3.2e+02 Score=24.10 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=17.1
Q ss_pred cchhhHHHHHHHHHhcCCHHHHH
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSA 427 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~ 427 (485)
.|+..|..+..+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 37778888888888888766554
No 485
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.87 E-value=3.1e+02 Score=23.98 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 137 KLAFRFYRHMREIG--------IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 137 ~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
+..-.+|.-+.+.| ++.|...+|.++..--.....++++++-.++-. |-.--...+..+...|++-++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc--CCChHHHH
Q 011463 209 EAKELFKEMETK----ACSPTV-VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK--GGCSSQAM 281 (485)
Q Consensus 209 ~a~~~~~~~~~~----~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~ 281 (485)
.+.++..+.... |.+.|. .+-..+.-.|....-.++.++..+.+.+.|...+..----.-.+... ..++.+|-
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011463 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEG 310 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (485)
.++......-.......|...+....-.|
T Consensus 213 ~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 213 ILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHhh
No 486
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.60 E-value=5.1e+02 Score=26.35 Aligned_cols=87 Identities=8% Similarity=0.024 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHh-CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---C----------CCChhhHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRN-RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG---C----------LPDEGTWSAVMTAL 452 (485)
Q Consensus 387 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~----------~p~~~~~~~l~~~~ 452 (485)
..++....+..+.+ .|+..+......++... .|+...++.+++++...| + ..+......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 34444555554443 45555555555555433 477777777776665432 1 11222333344444
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 453 WDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
. .++...++..++++++.|....
T Consensus 257 ~-~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 257 I-NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCHH
Confidence 4 3778888888888888776543
No 487
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.27 E-value=2.2e+02 Score=25.69 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=14.0
Q ss_pred cccCCCChHHHHHHHHccCCHHHHHHHHHH
Q 011463 8 KWSTKITSAQVLQLIRAEKDVNKALVIFDS 37 (485)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 37 (485)
.|+.....-.++..+.+.|-+..|..+.++
T Consensus 112 ~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~ 141 (389)
T KOG0396|consen 112 KWPRNKLDRFVVDHMLRNGYFGAAVLLGKK 141 (389)
T ss_pred HhHHHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 344444444444444444444444444433
No 488
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=33.79 E-value=2.6e+02 Score=22.74 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=12.0
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHh
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRN 400 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~ 400 (485)
.++..|.+. ...++.++++.+.+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 55556655555544
No 489
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.22 E-value=1.6e+02 Score=25.90 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=31.6
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
.+.|+.++|..+|+.+....+. ++.++..+....-..++.-+|-++|-+...
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 4566667777777766666544 555555555555555666666666665554
No 490
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.96 E-value=3.6e+02 Score=24.35 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPD----EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
++.--+...-.---.+++..++..++.. .|+ ...|..++......|.++..+.+|++++..|..|
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
No 491
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.10 E-value=3.2e+02 Score=23.18 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=46.0
Q ss_pred HHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCccccc----chhhhHHHHHHHHhcCChhHHH
Q 011463 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG-GITPNRLTWS----LHIRIHNTVVQGLCKTDPNRAF 392 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~a~ 392 (485)
+.+-....+++-+..-+..++ +...|+..+|+..++.-... |.......|. .+......++..+.+.++++|.
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~ 258 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEAL 258 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhccHHHHH
Confidence 333333334443444444333 44566666666655544332 1111111111 0112222555666666777777
Q ss_pred HHHHHHHhCCCccchhhHHHHHHHHH
Q 011463 393 QVYLSMRNRSISVDSLTYSSLITCFC 418 (485)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (485)
+++.++-+.|..|. ...+.+.+++-
T Consensus 259 ~il~~lw~lgysp~-Dii~~~FRv~K 283 (333)
T KOG0991|consen 259 KILAELWKLGYSPE-DIITTLFRVVK 283 (333)
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHHHH
Confidence 77777777776643 33444455443
No 492
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.10 E-value=6.5e+02 Score=26.84 Aligned_cols=113 Identities=15% Similarity=0.224 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011463 226 VVTYTSLINGLCQSK--SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303 (485)
Q Consensus 226 ~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (485)
..-+..++.+|.+.+ ++++|+....++++. +...-...++..+- +-.+.++|+.++.. -|.. -.++
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDvn~Ly~~ALG~---YDl~--Lal~ 879 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDVNKLYDVALGT---YDLE--LALM 879 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccHHHHHHHHhhh---cCHH--HHHH
Confidence 334566778888877 788888888888765 22222222222211 11233333333321 0111 1223
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (485)
-+--.+.|+.+=+-.++++... ++...- ..|.. ..|++++|++.+.+
T Consensus 880 VAq~SQkDPKEYLPfL~~L~~l--~~~~rr--y~ID~--hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 880 VAQQSQKDPKEYLPFLQELQKL--PPLYRR--YKIDD--HLKRYEKALRHLSA 926 (928)
T ss_pred HHHHhccChHHHHHHHHHHHhC--Chhhee--eeHhh--hhCCHHHHHHHHHh
Confidence 3334456677666667666654 232221 12222 35677777776654
No 493
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=32.08 E-value=1.5e+02 Score=19.42 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhc
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (485)
+.+.|..++..+...... ++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~dekR-sPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKR-SPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhc-ChHHHHHHHHHHHHc
Confidence 667788888877754433 788999888777654
No 494
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.88 E-value=1.4e+02 Score=18.87 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-----HHhcCcHHHHHHHH
Q 011463 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA-----LWDRRKMRQAAELL 465 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~ 465 (485)
+...|++=+|-++++.+-...-.|....+..++.. ..+.|+...|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 45678888888888887754223344445555443 23667777776653
No 495
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=31.82 E-value=74 Score=20.97 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=16.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452 (485)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 452 (485)
.|+.+.+.+++++..+.|..|.......+..++
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455566666666666555555444444343333
No 496
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.61 E-value=1.9e+02 Score=20.43 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011463 391 AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAV 448 (485)
Q Consensus 391 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 448 (485)
-.+.++++...+....+-....|.-.|++.|+.+.|.+-|+.=... -|...+|.-.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--FPES~~fmDF 111 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--FPESGVFMDF 111 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--CccchhHHHH
Confidence 3445666665554445555667777888999999998888876543 5666665543
No 497
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.10 E-value=7.3e+02 Score=27.13 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=81.1
Q ss_pred HHHHHccCCHHHHHH------HHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHH-------hhcCCCCCH
Q 011463 19 LQLIRAEKDVNKALV------IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV-------NKEKCDITE 85 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~ 85 (485)
.+.....|.+.+|.+ +++..- ..--++....|..+...+-+.|+.++|...-... ...+..-+.
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~---~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVM---GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhh---hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 344556777776666 666443 1222455678899999999999999998875543 222222233
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhc-----C--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEF-----G--CEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
..|..+.......++...|+..+.+.... | .||...+++.+-..+...++.+.|.++++.+..
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45555655566667888888877776543 2 244455555555555566888888888888765
No 498
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.99 E-value=1.8e+02 Score=20.94 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011463 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 168 (485)
+..-.|.++++.+.+.+...+..|....|..+...
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~ 48 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEA 48 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Confidence 33344444444444444333444444444444443
No 499
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.18 E-value=3.4e+02 Score=22.99 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=30.9
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE-ENQLKLAFRFYRHMR 147 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 147 (485)
..++..+-..|+++++...+.++...+...+..-.+.+..+|-. -|....+++++..+.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 34455556666667776666666666555555555555555522 344444454444443
No 500
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=29.94 E-value=3.3e+02 Score=22.80 Aligned_cols=97 Identities=14% Similarity=0.027 Sum_probs=59.4
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCC-ccchhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHH--
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSI-SVDSLTY--SSLITCFCKKGDIHKSARIVDELVLDGCLPDE--GTWSAVM-- 449 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~-- 449 (485)
.++--|.-. ++.+|...|..-....+ .++...+ ..-|+.....|+.++|++....+.-.-+.-|. ..+....
T Consensus 31 ~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~l 110 (228)
T KOG2659|consen 31 RLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHL 110 (228)
T ss_pred HHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHH
Confidence 455444444 88887777765443222 2233333 34567778999999999998887543222232 2222212
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 450 TALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
--+.+.|..++|+++.+.-+.....
T Consensus 111 IEliR~~~~eeal~F~q~~LA~~a~ 135 (228)
T KOG2659|consen 111 IELIREGKTEEALEFAQTKLAPFAE 135 (228)
T ss_pred HHHHHhhhHHHHHHHHHHHcccccc
Confidence 2356889999999999877765443
Done!