Query 011463
Match_columns 485
No_of_seqs 662 out of 2777
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 08:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-39 7.1E-44 314.8 42.4 439 15-478 87-586 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.4E-37 1.2E-41 299.2 36.8 425 24-475 65-549 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.4E-30 2.2E-34 234.2 44.5 382 18-456 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-28 3.8E-33 226.0 44.6 367 56-474 5-371 (388)
5 4g26_A Pentatricopeptide repea 100.0 4E-30 1.4E-34 238.7 24.3 204 69-273 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 5.7E-30 2E-34 237.7 24.2 206 103-309 8-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 5.9E-27 2E-31 223.0 35.9 440 15-475 9-482 (514)
8 3fp2_A TPR repeat-containing p 99.9 8E-25 2.7E-29 209.5 35.1 329 15-359 28-406 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 5.6E-24 1.9E-28 198.9 37.9 321 30-366 10-362 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 4.2E-23 1.4E-27 193.0 38.7 313 14-340 28-372 (450)
11 2gw1_A Mitochondrial precursor 99.9 2.4E-23 8.3E-28 198.1 33.3 411 49-476 5-449 (514)
12 3fp2_A TPR repeat-containing p 99.9 1.9E-22 6.6E-27 192.9 28.5 403 49-477 24-497 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.6E-20 5.3E-25 169.8 37.7 298 16-325 7-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3E-20 1E-24 168.0 37.4 306 49-366 2-339 (359)
15 2xm6_A Protein corresponding t 99.9 1.1E-18 3.8E-23 164.3 46.4 397 29-471 24-467 (490)
16 2xm6_A Protein corresponding t 99.9 2.9E-18 1E-22 161.5 46.2 367 67-474 24-435 (490)
17 2ooe_A Cleavage stimulation fa 99.9 5.3E-19 1.8E-23 168.3 41.1 412 47-473 10-494 (530)
18 3hym_B Cell division cycle pro 99.9 5.1E-20 1.7E-24 164.4 30.9 296 45-348 17-322 (330)
19 3hym_B Cell division cycle pro 99.9 1.1E-19 3.9E-24 162.2 30.9 290 13-313 23-322 (330)
20 1fch_A Peroxisomal targeting s 99.9 3.4E-20 1.2E-24 168.3 24.5 310 22-357 35-356 (368)
21 1fch_A Peroxisomal targeting s 99.9 1.1E-19 3.8E-24 164.9 24.4 273 62-360 37-314 (368)
22 2ooe_A Cleavage stimulation fa 99.9 1.1E-17 3.8E-22 159.2 38.9 390 73-477 2-460 (530)
23 4eqf_A PEX5-related protein; a 99.8 1E-18 3.5E-23 158.3 24.6 234 49-289 64-309 (365)
24 4g1t_A Interferon-induced prot 99.8 3.1E-17 1.1E-21 154.1 34.3 390 49-478 50-466 (472)
25 4eqf_A PEX5-related protein; a 99.8 9E-19 3.1E-23 158.7 22.5 266 12-286 65-352 (365)
26 4g1t_A Interferon-induced prot 99.8 2E-17 7E-22 155.3 32.4 351 84-474 50-428 (472)
27 3cv0_A Peroxisome targeting si 99.8 1.9E-18 6.6E-23 153.9 23.9 232 50-289 21-268 (327)
28 1b89_A Protein (clathrin heavy 99.8 1.9E-18 6.5E-23 153.1 22.6 288 20-354 11-305 (449)
29 3cv0_A Peroxisome targeting si 99.8 5.1E-18 1.7E-22 151.2 25.5 267 11-287 20-312 (327)
30 1xi4_A Clathrin heavy chain; a 99.8 1.7E-15 5.8E-20 150.0 43.4 397 15-466 988-1440(1630)
31 3mkr_A Coatomer subunit epsilo 99.8 1.9E-17 6.5E-22 143.8 25.1 249 21-289 8-263 (291)
32 3mkr_A Coatomer subunit epsilo 99.8 6.7E-17 2.3E-21 140.4 26.3 254 57-325 6-264 (291)
33 1b89_A Protein (clathrin heavy 99.8 1.2E-17 3.9E-22 148.1 20.0 239 62-343 15-253 (449)
34 1xi4_A Clathrin heavy chain; a 99.8 1.7E-14 5.7E-19 143.0 41.1 357 48-470 983-1344(1630)
35 3e4b_A ALGK; tetratricopeptide 99.7 3.4E-15 1.2E-19 138.3 29.4 311 16-360 7-351 (452)
36 3e4b_A ALGK; tetratricopeptide 99.7 8.1E-16 2.8E-20 142.5 24.2 379 55-471 8-421 (452)
37 2pl2_A Hypothetical conserved 99.7 8.8E-16 3E-20 127.4 21.3 196 47-250 2-209 (217)
38 2pl2_A Hypothetical conserved 99.7 8.2E-16 2.8E-20 127.6 19.8 196 14-219 7-213 (217)
39 3uq3_A Heat shock protein STI1 99.7 2.5E-15 8.7E-20 128.7 22.8 226 50-290 5-236 (258)
40 4e6h_A MRNA 3'-END-processing 99.7 4.8E-13 1.6E-17 128.0 40.3 441 27-480 47-579 (679)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.5E-16 1.2E-20 135.5 16.5 253 21-284 14-269 (275)
42 2h6f_A Protein farnesyltransfe 99.7 8E-15 2.7E-19 131.5 24.7 216 51-274 98-322 (382)
43 3u4t_A TPR repeat-containing p 99.7 8.3E-15 2.8E-19 126.6 23.6 232 16-255 7-250 (272)
44 3uq3_A Heat shock protein STI1 99.7 1.2E-14 4.2E-19 124.4 24.5 223 122-359 7-235 (258)
45 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-16 4.7E-21 152.8 12.7 160 86-251 128-306 (1134)
46 3u4t_A TPR repeat-containing p 99.7 1.2E-14 4E-19 125.6 23.7 234 50-290 3-250 (272)
47 3spa_A Mtrpol, DNA-directed RN 99.7 4.9E-17 1.7E-21 155.8 9.1 113 156-269 128-244 (1134)
48 2h6f_A Protein farnesyltransfe 99.7 1.7E-14 5.9E-19 129.3 24.5 251 84-343 96-365 (382)
49 1ouv_A Conserved hypothetical 99.7 2.6E-13 8.8E-18 117.2 31.2 224 48-290 4-251 (273)
50 1xnf_A Lipoprotein NLPI; TPR, 99.7 7.9E-15 2.7E-19 126.9 20.1 244 205-465 19-269 (275)
51 2q7f_A YRRB protein; TPR, prot 99.7 1.1E-14 3.9E-19 123.4 20.7 194 17-219 28-221 (243)
52 2ho1_A Type 4 fimbrial biogene 99.7 1.4E-13 4.8E-18 117.4 26.6 201 50-255 37-238 (252)
53 1ouv_A Conserved hypothetical 99.7 6.3E-13 2.1E-17 114.8 30.7 224 84-361 5-252 (273)
54 2vq2_A PILW, putative fimbrial 99.7 9.9E-14 3.4E-18 116.0 24.9 205 47-255 5-211 (225)
55 2ho1_A Type 4 fimbrial biogene 99.6 1E-13 3.5E-18 118.2 24.1 200 13-220 38-238 (252)
56 2q7f_A YRRB protein; TPR, prot 99.6 3.4E-14 1.2E-18 120.4 20.1 201 49-255 22-222 (243)
57 2vq2_A PILW, putative fimbrial 99.6 2.7E-13 9.4E-18 113.2 24.3 200 14-220 10-211 (225)
58 3sf4_A G-protein-signaling mod 99.6 4.9E-14 1.7E-18 129.4 18.6 297 49-347 8-363 (406)
59 4a1s_A PINS, partner of inscut 99.6 5.1E-14 1.7E-18 129.6 17.7 138 333-472 225-373 (411)
60 2ond_A Cleavage stimulation fa 99.6 8E-13 2.7E-17 116.1 24.4 218 29-255 33-270 (308)
61 4e6h_A MRNA 3'-END-processing 99.6 2.1E-11 7.1E-16 116.8 35.8 420 15-450 69-582 (679)
62 4a1s_A PINS, partner of inscut 99.6 7.7E-14 2.6E-18 128.4 18.5 276 51-359 49-371 (411)
63 3sf4_A G-protein-signaling mod 99.6 2E-13 7E-18 125.3 20.3 276 193-471 11-336 (406)
64 3ro2_A PINS homolog, G-protein 99.6 1.5E-13 5.3E-18 122.5 17.8 208 263-472 85-333 (338)
65 3vtx_A MAMA; tetratricopeptide 99.5 1.9E-12 6.6E-17 104.3 21.9 166 49-219 4-169 (184)
66 3nf1_A KLC 1, kinesin light ch 99.5 1.5E-13 5.2E-18 121.1 16.5 247 190-471 26-307 (311)
67 2ond_A Cleavage stimulation fa 99.5 8.2E-12 2.8E-16 109.7 27.4 220 243-474 33-273 (308)
68 3ulq_A Response regulator aspa 99.5 1.3E-12 4.6E-17 118.8 23.0 236 91-359 109-367 (383)
69 3ro2_A PINS homolog, G-protein 99.5 2.2E-13 7.4E-18 121.5 17.2 62 298-359 265-331 (338)
70 3ulq_A Response regulator aspa 99.5 1.3E-12 4.5E-17 118.8 22.0 192 165-357 113-332 (383)
71 3vtx_A MAMA; tetratricopeptide 99.5 1.9E-12 6.4E-17 104.4 20.4 172 190-367 4-175 (184)
72 4abn_A Tetratricopeptide repea 99.5 7.2E-13 2.5E-17 123.5 17.9 216 65-287 83-318 (474)
73 4abn_A Tetratricopeptide repea 99.5 4E-12 1.4E-16 118.5 19.8 217 100-323 83-319 (474)
74 3nf1_A KLC 1, kinesin light ch 99.5 4.1E-13 1.4E-17 118.3 12.0 170 49-219 26-223 (311)
75 1hz4_A MALT regulatory protein 99.4 6.1E-11 2.1E-15 107.4 25.5 273 197-471 20-322 (373)
76 3q15_A PSP28, response regulat 99.4 7.3E-11 2.5E-15 107.0 25.2 231 125-359 106-364 (378)
77 4gyw_A UDP-N-acetylglucosamine 99.4 1E-11 3.5E-16 120.4 20.3 168 47-219 6-173 (723)
78 3q15_A PSP28, response regulat 99.4 5E-11 1.7E-15 108.1 23.1 296 23-324 23-364 (378)
79 1hz4_A MALT regulatory protein 99.4 1.5E-10 5E-15 104.9 26.1 234 54-288 18-280 (373)
80 3as5_A MAMA; tetratricopeptide 99.4 3.9E-11 1.3E-15 96.6 20.0 164 52-220 10-173 (186)
81 3as5_A MAMA; tetratricopeptide 99.4 6.1E-11 2.1E-15 95.5 20.0 161 17-185 13-173 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.4 2.2E-11 7.4E-16 118.2 19.3 163 14-184 11-173 (723)
83 4i17_A Hypothetical protein; T 99.3 3.2E-10 1.1E-14 94.8 21.8 194 48-255 5-209 (228)
84 4i17_A Hypothetical protein; T 99.3 2.3E-10 7.7E-15 95.7 20.0 201 153-367 5-214 (228)
85 3edt_B KLC 2, kinesin light ch 99.3 1E-11 3.6E-16 107.5 11.3 98 262-359 86-197 (283)
86 2uy1_A Cleavage stimulation fa 99.3 7.9E-09 2.7E-13 96.2 30.5 377 25-470 7-412 (493)
87 3edt_B KLC 2, kinesin light ch 99.3 6.7E-11 2.3E-15 102.4 13.6 227 131-359 12-280 (283)
88 1qqe_A Vesicular transport pro 99.2 2.2E-10 7.5E-15 99.6 16.2 213 241-472 32-270 (292)
89 4ga2_A E3 SUMO-protein ligase 99.2 6.1E-11 2.1E-15 91.6 10.9 142 18-167 3-146 (150)
90 3mv2_B Coatomer subunit epsilo 99.2 1.3E-08 4.4E-13 86.6 25.1 244 20-291 21-283 (310)
91 3urz_A Uncharacterized protein 99.2 4.2E-10 1.4E-14 92.3 15.1 159 18-185 10-186 (208)
92 3mv2_B Coatomer subunit epsilo 99.2 5.5E-09 1.9E-13 88.9 21.8 178 175-359 85-281 (310)
93 1qqe_A Vesicular transport pro 99.2 1.3E-09 4.4E-14 94.7 18.4 209 27-254 32-268 (292)
94 2pzi_A Probable serine/threoni 99.2 3.8E-10 1.3E-14 110.0 16.3 175 23-203 402-580 (681)
95 2fo7_A Synthetic consensus TPR 99.2 1.1E-09 3.6E-14 82.8 15.1 128 16-149 5-132 (136)
96 3qky_A Outer membrane assembly 99.2 2E-09 6.8E-14 92.0 18.5 103 47-150 12-127 (261)
97 3urz_A Uncharacterized protein 99.2 2.1E-09 7E-14 88.2 17.7 166 49-220 3-186 (208)
98 3dra_A Protein farnesyltransfe 99.2 3.3E-08 1.1E-12 85.0 25.6 221 25-254 46-286 (306)
99 3qky_A Outer membrane assembly 99.1 4.9E-09 1.7E-13 89.5 19.3 173 295-476 14-229 (261)
100 2pzi_A Probable serine/threoni 99.1 1E-09 3.6E-14 107.0 15.4 172 61-240 402-582 (681)
101 2fo7_A Synthetic consensus TPR 99.1 5.6E-09 1.9E-13 78.7 16.3 127 53-183 4-130 (136)
102 2r5s_A Uncharacterized protein 99.1 1.7E-09 5.7E-14 86.2 13.9 158 17-182 11-170 (176)
103 2r5s_A Uncharacterized protein 99.1 1.8E-09 6.2E-14 85.9 13.8 162 51-218 7-171 (176)
104 3qou_A Protein YBBN; thioredox 99.1 5.9E-09 2E-13 90.2 18.0 165 48-217 115-281 (287)
105 3dra_A Protein farnesyltransfe 99.1 1.3E-07 4.3E-12 81.4 25.5 232 58-324 40-286 (306)
106 3rjv_A Putative SEL1 repeat pr 99.1 2.6E-08 8.9E-13 81.8 20.4 127 85-219 18-157 (212)
107 3rjv_A Putative SEL1 repeat pr 99.1 1.3E-08 4.4E-13 83.6 18.4 176 29-222 3-199 (212)
108 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.8E-08 6.1E-13 83.8 18.5 201 18-256 10-214 (225)
109 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.6E-08 5.5E-13 84.0 18.1 167 14-221 43-214 (225)
110 3qou_A Protein YBBN; thioredox 99.0 5.3E-09 1.8E-13 90.5 15.3 160 16-184 121-283 (287)
111 4ga2_A E3 SUMO-protein ligase 99.0 9.9E-10 3.4E-14 84.7 9.6 143 58-205 5-148 (150)
112 2uy1_A Cleavage stimulation fa 99.0 1.2E-06 4.1E-11 81.6 31.4 312 26-357 28-380 (493)
113 2vsy_A XCC0866; transferase, g 99.0 5.6E-09 1.9E-13 100.1 16.2 154 25-187 2-159 (568)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.5E-08 8.6E-13 82.1 17.7 127 15-150 9-151 (213)
115 2vsy_A XCC0866; transferase, g 99.0 2.3E-08 7.8E-13 95.8 18.2 154 63-221 2-158 (568)
116 3gyz_A Chaperone protein IPGC; 99.0 2.7E-09 9.1E-14 81.8 9.1 106 47-156 33-138 (151)
117 4gco_A Protein STI-1; structur 99.0 1.1E-08 3.9E-13 75.9 12.1 106 50-159 13-118 (126)
118 4gco_A Protein STI-1; structur 99.0 1.3E-08 4.5E-13 75.5 12.4 105 16-126 17-121 (126)
119 2ifu_A Gamma-SNAP; membrane fu 98.9 4.5E-08 1.5E-12 85.6 17.1 84 170-253 129-222 (307)
120 3q7a_A Farnesyltransferase alp 98.9 7.6E-07 2.6E-11 77.4 23.9 178 20-206 62-257 (349)
121 2vgx_A Chaperone SYCD; alterna 98.9 1.1E-08 3.7E-13 78.6 10.0 112 33-150 8-119 (148)
122 2e2e_A Formate-dependent nitri 98.9 1.2E-08 4.1E-13 81.2 10.6 123 22-150 20-145 (177)
123 1a17_A Serine/threonine protei 98.9 5.2E-08 1.8E-12 76.4 14.0 124 17-146 18-143 (166)
124 2lni_A Stress-induced-phosphop 98.8 3.9E-08 1.3E-12 73.9 12.0 102 47-150 13-114 (133)
125 3u3w_A Transcriptional activat 98.8 3.9E-06 1.3E-10 72.7 26.1 167 303-471 82-266 (293)
126 3q7a_A Farnesyltransferase alp 98.8 2.3E-06 7.9E-11 74.4 23.8 176 59-240 63-256 (349)
127 3u3w_A Transcriptional activat 98.8 6.1E-07 2.1E-11 77.9 20.2 208 142-359 33-265 (293)
128 2c2l_A CHIP, carboxy terminus 98.8 1.5E-08 5.1E-13 87.3 9.8 93 17-114 9-101 (281)
129 2ifu_A Gamma-SNAP; membrane fu 98.8 2.3E-07 7.9E-12 81.1 16.7 158 59-218 45-222 (307)
130 4f3v_A ESX-1 secretion system 98.8 6E-07 2.1E-11 75.4 18.2 187 62-255 18-237 (282)
131 2vyi_A SGTA protein; chaperone 98.8 1.2E-07 4E-12 70.9 12.7 99 49-149 11-109 (131)
132 1na0_A Designed protein CTPR3; 98.8 1.7E-07 5.9E-12 69.2 13.2 99 50-150 9-107 (125)
133 2xcb_A PCRH, regulatory protei 98.8 6.3E-08 2.2E-12 73.7 10.9 102 47-150 15-116 (142)
134 3gyz_A Chaperone protein IPGC; 98.8 5.9E-08 2E-12 74.3 10.6 101 14-121 38-138 (151)
135 2c2l_A CHIP, carboxy terminus 98.8 2.6E-07 8.8E-12 79.5 16.0 195 260-472 3-200 (281)
136 2qfc_A PLCR protein; TPR, HTH, 98.8 9.4E-07 3.2E-11 76.6 19.7 171 298-471 77-266 (293)
137 1hh8_A P67PHOX, NCF-2, neutrop 98.8 6.9E-07 2.3E-11 73.3 17.9 126 195-325 10-150 (213)
138 1a17_A Serine/threonine protei 98.8 3.8E-07 1.3E-11 71.4 15.4 128 51-182 14-143 (166)
139 2lni_A Stress-induced-phosphop 98.8 3.8E-07 1.3E-11 68.3 14.6 119 10-134 14-132 (133)
140 2qfc_A PLCR protein; TPR, HTH, 98.7 3.1E-06 1.1E-10 73.3 22.0 168 192-359 76-265 (293)
141 1p5q_A FKBP52, FK506-binding p 98.7 1.8E-07 6.2E-12 82.8 14.0 127 15-147 150-292 (336)
142 3upv_A Heat shock protein STI1 98.7 2.8E-07 9.7E-12 68.4 13.1 96 51-148 5-100 (126)
143 3gw4_A Uncharacterized protein 98.7 1.6E-07 5.6E-12 76.4 12.0 122 23-148 3-135 (203)
144 2vyi_A SGTA protein; chaperone 98.7 4E-07 1.4E-11 67.9 13.2 115 15-135 15-129 (131)
145 1na0_A Designed protein CTPR3; 98.7 9.8E-07 3.4E-11 65.1 15.3 93 17-114 14-106 (125)
146 4f3v_A ESX-1 secretion system 98.7 7.2E-08 2.5E-12 80.9 9.6 189 24-220 18-237 (282)
147 1p5q_A FKBP52, FK506-binding p 98.7 2.7E-08 9.1E-13 88.1 7.2 119 25-148 126-258 (336)
148 2e2e_A Formate-dependent nitri 98.7 3.9E-07 1.3E-11 72.3 13.0 121 61-185 21-144 (177)
149 2xcb_A PCRH, regulatory protei 98.7 2.2E-07 7.6E-12 70.7 10.6 96 15-115 21-116 (142)
150 3upv_A Heat shock protein STI1 98.6 5.4E-07 1.9E-11 66.8 12.4 95 15-114 7-101 (126)
151 4gcn_A Protein STI-1; structur 98.6 7.2E-07 2.5E-11 66.2 12.9 98 51-149 9-112 (127)
152 4gcn_A Protein STI-1; structur 98.6 3E-07 1E-11 68.3 10.5 106 14-125 10-121 (127)
153 1elw_A TPR1-domain of HOP; HOP 98.6 7.3E-07 2.5E-11 65.0 12.5 95 52-148 6-100 (118)
154 1elw_A TPR1-domain of HOP; HOP 98.6 1.4E-06 4.8E-11 63.5 13.9 95 16-115 8-102 (118)
155 2fbn_A 70 kDa peptidylprolyl i 98.6 3.7E-07 1.3E-11 74.0 11.6 117 17-139 43-175 (198)
156 3gw4_A Uncharacterized protein 98.6 4.4E-07 1.5E-11 73.8 12.0 156 61-218 3-174 (203)
157 3dss_A Geranylgeranyl transfer 98.6 7.5E-05 2.6E-09 64.6 26.1 139 61-204 40-192 (331)
158 2vgx_A Chaperone SYCD; alterna 98.6 6.1E-07 2.1E-11 68.6 11.4 110 72-185 9-118 (148)
159 3sz7_A HSC70 cochaperone (SGT) 98.6 1.3E-06 4.4E-11 68.3 13.5 101 48-150 9-109 (164)
160 3q49_B STIP1 homology and U bo 98.6 1.4E-06 4.7E-11 65.7 13.3 101 47-149 6-106 (137)
161 3dss_A Geranylgeranyl transfer 98.6 0.00014 4.7E-09 63.0 27.0 174 22-203 39-239 (331)
162 1hxi_A PEX5, peroxisome target 98.6 5.1E-07 1.8E-11 66.3 10.3 94 53-148 20-113 (121)
163 2fbn_A 70 kDa peptidylprolyl i 98.6 5.4E-08 1.8E-12 79.0 5.5 123 22-149 14-151 (198)
164 2kck_A TPR repeat; tetratricop 98.6 6.1E-07 2.1E-11 64.7 10.6 94 16-113 10-105 (112)
165 3sz7_A HSC70 cochaperone (SGT) 98.6 7E-07 2.4E-11 69.8 11.5 97 14-115 13-109 (164)
166 1hxi_A PEX5, peroxisome target 98.6 3.3E-07 1.1E-11 67.4 8.8 96 14-114 19-114 (121)
167 2dba_A Smooth muscle cell asso 98.5 1.3E-06 4.6E-11 66.7 12.0 112 47-162 25-139 (148)
168 2xev_A YBGF; tetratricopeptide 98.5 2.6E-06 8.8E-11 63.3 13.0 94 16-114 6-105 (129)
169 2dba_A Smooth muscle cell asso 98.5 4.4E-06 1.5E-10 63.8 14.6 95 14-114 30-128 (148)
170 2xev_A YBGF; tetratricopeptide 98.5 3.3E-06 1.1E-10 62.8 13.2 102 53-158 5-112 (129)
171 3q49_B STIP1 homology and U bo 98.5 9.7E-07 3.3E-11 66.5 10.3 98 12-114 9-106 (137)
172 1elr_A TPR2A-domain of HOP; HO 98.5 2.1E-06 7.2E-11 63.9 11.9 98 51-149 5-108 (131)
173 1elr_A TPR2A-domain of HOP; HO 98.5 8E-07 2.8E-11 66.2 8.9 110 15-130 7-122 (131)
174 3k9i_A BH0479 protein; putativ 98.4 3.2E-07 1.1E-11 67.1 6.1 86 25-114 3-90 (117)
175 4b4t_Q 26S proteasome regulato 98.4 1.9E-05 6.5E-10 72.7 19.2 163 18-183 10-202 (434)
176 2kck_A TPR repeat; tetratricop 98.4 4.7E-06 1.6E-10 59.9 12.1 98 261-360 6-106 (112)
177 1wao_1 Serine/threonine protei 98.4 5.4E-07 1.9E-11 83.7 8.3 118 21-144 15-134 (477)
178 4b4t_Q 26S proteasome regulato 98.4 4.2E-05 1.4E-09 70.4 20.3 167 123-289 58-244 (434)
179 3rkv_A Putative peptidylprolyl 98.4 5.9E-06 2E-10 64.3 12.0 99 51-150 12-127 (162)
180 3rkv_A Putative peptidylprolyl 98.3 3.4E-06 1.2E-10 65.7 10.3 100 15-115 14-127 (162)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.6E-06 1.2E-10 77.9 12.1 120 15-140 271-405 (457)
182 1ihg_A Cyclophilin 40; ppiase 98.3 3.1E-06 1.1E-10 75.7 10.9 123 15-139 226-360 (370)
183 3k9i_A BH0479 protein; putativ 98.3 1.7E-06 5.7E-11 63.2 7.1 88 62-150 2-91 (117)
184 2hr2_A Hypothetical protein; a 98.3 4.3E-06 1.5E-10 63.2 9.2 96 16-113 15-130 (159)
185 1wao_1 Serine/threonine protei 98.3 2.9E-06 1E-10 78.8 10.0 123 53-180 9-134 (477)
186 3ro3_A PINS homolog, G-protein 98.3 1E-05 3.5E-10 62.7 11.5 65 407-471 89-158 (164)
187 2if4_A ATFKBP42; FKBP-like, al 98.3 2.1E-06 7E-11 76.0 8.1 110 16-148 183-292 (338)
188 2hr2_A Hypothetical protein; a 98.3 1.5E-05 5E-10 60.3 11.4 98 51-149 12-131 (159)
189 3ro3_A PINS homolog, G-protein 98.2 7.1E-06 2.4E-10 63.6 10.1 134 15-148 12-157 (164)
190 3n71_A Histone lysine methyltr 98.2 8.6E-06 2.9E-10 75.2 11.7 128 21-148 318-463 (490)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.7E-05 9.1E-10 72.0 13.4 88 121-211 318-405 (457)
192 1ihg_A Cyclophilin 40; ppiase 98.1 1.7E-05 5.7E-10 71.0 11.0 97 51-149 224-336 (370)
193 1dce_A Protein (RAB geranylger 98.1 0.00047 1.6E-08 65.3 21.2 175 61-241 39-241 (567)
194 1dce_A Protein (RAB geranylger 98.1 7E-05 2.4E-09 70.9 15.5 177 25-209 42-244 (567)
195 2kat_A Uncharacterized protein 98.1 3.2E-05 1.1E-09 56.0 9.9 83 389-473 2-84 (115)
196 1klx_A Cysteine rich protein B 98.1 7.5E-05 2.6E-09 56.0 11.9 112 25-150 8-127 (138)
197 1zu2_A Mitochondrial import re 98.1 7.1E-06 2.4E-10 61.9 6.1 95 22-123 12-127 (158)
198 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 5.7E-10 70.1 9.0 96 122-220 232-328 (338)
199 2l6j_A TPR repeat-containing p 98.0 4E-06 1.4E-10 60.3 3.7 89 16-109 8-102 (111)
200 1klx_A Cysteine rich protein B 98.0 0.00047 1.6E-08 51.6 15.0 111 240-361 9-127 (138)
201 1na3_A Designed protein CTPR2; 98.0 6.7E-05 2.3E-09 51.4 9.5 81 50-132 9-89 (91)
202 2kat_A Uncharacterized protein 98.0 9.9E-05 3.4E-09 53.3 10.8 79 30-113 3-81 (115)
203 1zu2_A Mitochondrial import re 98.0 2.9E-05 9.8E-10 58.6 7.9 100 61-164 13-133 (158)
204 2l6j_A TPR repeat-containing p 97.9 3.3E-05 1.1E-09 55.3 7.7 65 49-114 3-67 (111)
205 1na3_A Designed protein CTPR2; 97.9 9.1E-05 3.1E-09 50.7 8.6 80 14-98 11-90 (91)
206 3n71_A Histone lysine methyltr 97.8 5.8E-05 2E-09 69.7 9.3 126 235-360 318-464 (490)
207 3ma5_A Tetratricopeptide repea 97.7 0.00013 4.4E-09 51.1 7.9 66 47-113 4-69 (100)
208 3ma5_A Tetratricopeptide repea 97.7 0.0002 7E-09 50.1 8.5 66 406-472 6-71 (100)
209 3bee_A Putative YFRE protein; 97.4 0.0027 9.1E-08 43.4 10.2 68 47-115 3-73 (93)
210 3bee_A Putative YFRE protein; 97.4 0.00063 2.2E-08 46.5 7.0 68 406-474 5-75 (93)
211 3ly7_A Transcriptional activat 97.3 0.0055 1.9E-07 53.3 13.9 72 405-478 275-346 (372)
212 3qww_A SET and MYND domain-con 97.3 0.00079 2.7E-08 61.1 9.0 87 25-111 311-408 (433)
213 2kc7_A BFR218_protein; tetratr 97.3 0.0016 5.5E-08 45.2 8.6 83 17-112 5-88 (99)
214 3qwp_A SET and MYND domain-con 97.2 0.00072 2.4E-08 61.5 7.7 92 57-148 294-399 (429)
215 3ly7_A Transcriptional activat 97.2 0.01 3.5E-07 51.7 14.1 48 47-95 191-243 (372)
216 2kc7_A BFR218_protein; tetratr 97.1 0.0044 1.5E-07 42.8 8.9 59 56-115 6-65 (99)
217 3qww_A SET and MYND domain-con 97.0 0.0025 8.6E-08 57.8 8.7 85 387-471 313-411 (433)
218 1pc2_A Mitochondria fission pr 96.9 0.0077 2.6E-07 44.9 9.2 87 388-476 14-105 (152)
219 3lvg_A Clathrin heavy chain 1; 96.9 3.8E-07 1.3E-11 80.5 -16.0 259 16-315 58-323 (624)
220 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0079 2.7E-07 42.1 8.4 58 378-435 10-74 (104)
221 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0095 3.2E-07 41.7 8.7 69 14-82 7-78 (104)
222 3qwp_A SET and MYND domain-con 96.7 0.014 4.9E-07 52.9 11.4 92 268-359 294-399 (429)
223 3mkq_B Coatomer subunit alpha; 96.7 0.14 4.7E-06 39.3 15.0 130 57-217 12-141 (177)
224 4h7y_A Dual specificity protei 96.6 0.06 2E-06 39.6 11.7 116 47-164 10-137 (161)
225 4h7y_A Dual specificity protei 96.6 0.051 1.8E-06 39.9 11.2 118 328-449 10-135 (161)
226 3mkq_A Coatomer beta'-subunit; 96.5 0.036 1.2E-06 55.4 14.3 151 95-285 609-760 (814)
227 3mkq_A Coatomer beta'-subunit; 96.5 0.075 2.6E-06 53.1 16.4 156 19-217 606-762 (814)
228 1pc2_A Mitochondria fission pr 96.4 0.014 4.9E-07 43.4 7.9 85 26-114 12-100 (152)
229 3lvg_A Clathrin heavy chain 1; 95.9 0.015 5E-07 52.2 6.4 375 11-429 82-534 (624)
230 3u64_A Protein TP_0956; tetrat 95.8 0.72 2.5E-05 38.6 19.2 84 208-293 180-272 (301)
231 1nzn_A CGI-135 protein, fissio 95.8 0.035 1.2E-06 39.7 6.8 89 387-477 16-109 (126)
232 3u64_A Protein TP_0956; tetrat 95.7 0.066 2.2E-06 44.7 9.2 63 52-114 201-269 (301)
233 3mkq_B Coatomer subunit alpha; 95.6 0.57 2E-05 35.9 16.6 129 93-252 13-141 (177)
234 1wy6_A Hypothetical protein ST 95.4 0.49 1.7E-05 34.1 16.9 140 307-475 18-158 (172)
235 3ffl_A Anaphase-promoting comp 94.8 0.18 6E-06 38.0 8.3 72 5-78 13-91 (167)
236 2ff4_A Probable regulatory pro 94.8 0.54 1.9E-05 42.0 13.1 77 87-164 173-254 (388)
237 1nzn_A CGI-135 protein, fissio 94.6 0.14 4.7E-06 36.7 7.0 86 25-114 14-103 (126)
238 1wy6_A Hypothetical protein ST 94.2 1.1 3.6E-05 32.4 15.4 62 229-291 94-155 (172)
239 3o48_A Mitochondria fission 1 93.9 0.26 8.8E-06 35.5 7.2 73 402-476 35-112 (134)
240 1y8m_A FIS1; mitochondria, unk 93.4 0.72 2.5E-05 33.6 8.8 73 404-476 36-111 (144)
241 4fhn_B Nucleoporin NUP120; pro 92.8 1 3.6E-05 46.7 12.7 192 17-218 817-1048(1139)
242 4gns_B Protein CSD3, chitin bi 92.6 0.73 2.5E-05 44.7 10.4 53 304-357 345-397 (754)
243 4gns_B Protein CSD3, chitin bi 92.5 0.83 2.8E-05 44.3 10.7 127 88-218 251-398 (754)
244 2ff4_A Probable regulatory pro 92.5 2.2 7.6E-05 38.0 12.9 78 122-201 173-255 (388)
245 4fhn_B Nucleoporin NUP120; pro 92.0 6 0.00021 41.2 17.0 194 53-254 815-1049(1139)
246 1qsa_A Protein (soluble lytic 92.0 8.7 0.0003 36.6 24.8 119 345-470 228-347 (618)
247 1v54_E Cytochrome C oxidase po 91.6 1.5 5E-05 29.7 7.7 63 387-450 25-87 (109)
248 1y8m_A FIS1; mitochondria, unk 90.9 3.3 0.00011 30.2 9.7 68 47-114 36-106 (144)
249 4b4t_P 26S proteasome regulato 90.6 9.8 0.00033 34.6 16.0 50 205-254 30-84 (445)
250 3o48_A Mitochondria fission 1 88.2 4.4 0.00015 29.2 8.5 59 387-447 58-116 (134)
251 3ffl_A Anaphase-promoting comp 85.8 8.1 0.00028 29.1 9.2 60 88-147 23-90 (167)
252 4b4t_R RPN7, 26S proteasome re 84.6 12 0.00041 33.8 11.9 61 87-147 133-195 (429)
253 2wpv_A GET4, UPF0363 protein Y 84.6 18 0.00061 30.8 18.0 25 225-249 133-157 (312)
254 4b4t_R RPN7, 26S proteasome re 83.1 8.5 0.00029 34.8 10.2 98 193-290 133-237 (429)
255 1zbp_A Hypothetical protein VP 83.0 5.2 0.00018 33.0 7.8 53 60-113 7-59 (273)
256 2y69_E Cytochrome C oxidase su 83.0 11 0.00037 27.2 9.6 60 390-450 71-130 (152)
257 4ady_A RPN2, 26S proteasome re 82.7 42 0.0014 33.7 32.6 153 305-470 499-657 (963)
258 2p58_C Putative type III secre 82.2 9.3 0.00032 25.8 7.4 80 25-115 20-99 (116)
259 1v54_E Cytochrome C oxidase po 81.9 9.8 0.00033 25.8 10.6 62 171-233 25-86 (109)
260 3lpz_A GET4 (YOR164C homolog); 81.2 26 0.00088 30.2 22.1 26 294-319 134-159 (336)
261 2uwj_G Type III export protein 80.5 8.7 0.0003 25.8 6.6 80 25-115 19-98 (115)
262 3txn_A 26S proteasome regulato 79.0 34 0.0012 30.3 25.2 159 196-357 104-281 (394)
263 3esl_A Checkpoint serine/threo 77.0 21 0.0007 28.0 9.0 53 388-440 95-148 (202)
264 2wpv_A GET4, UPF0363 protein Y 76.4 35 0.0012 29.0 23.5 25 295-319 133-157 (312)
265 2y69_E Cytochrome C oxidase su 75.6 20 0.00068 25.9 10.7 63 171-234 68-130 (152)
266 3esl_A Checkpoint serine/threo 74.5 29 0.00099 27.2 9.2 56 274-329 92-148 (202)
267 3kae_A CDC27, possible protein 70.8 23 0.00077 26.8 7.4 34 446-479 118-151 (242)
268 1zbp_A Hypothetical protein VP 68.2 50 0.0017 27.3 13.7 118 93-220 5-129 (273)
269 3txn_A 26S proteasome regulato 66.2 71 0.0024 28.3 26.3 232 231-482 104-354 (394)
270 3lpz_A GET4 (YOR164C homolog); 64.2 70 0.0024 27.5 19.8 23 52-74 37-59 (336)
271 3eiq_C Programmed cell death p 63.9 72 0.0025 27.8 10.5 66 410-476 220-287 (358)
272 3eiq_C Programmed cell death p 63.4 76 0.0026 27.6 11.7 25 334-358 220-244 (358)
273 1wdy_A 2-5A-dependent ribonucl 62.1 64 0.0022 26.4 10.5 13 280-292 198-210 (285)
274 4b4t_P 26S proteasome regulato 61.3 95 0.0033 28.1 27.7 93 231-323 142-245 (445)
275 4a1g_A Mitotic checkpoint seri 59.5 51 0.0018 24.4 9.2 50 280-329 84-134 (152)
276 2wvi_A Mitotic checkpoint seri 59.0 55 0.0019 24.6 8.2 54 102-155 77-131 (164)
277 4ady_A RPN2, 26S proteasome re 58.4 1.6E+02 0.0054 29.7 34.4 251 170-435 388-657 (963)
278 1qsa_A Protein (soluble lytic 57.9 1.3E+02 0.0045 28.6 34.8 54 47-101 99-152 (618)
279 3jxi_A Vanilloid receptor-rela 55.8 26 0.0009 28.6 6.5 53 59-111 11-72 (260)
280 1wdy_A 2-5A-dependent ribonucl 55.2 85 0.0029 25.6 12.7 52 378-430 185-239 (285)
281 2uwj_G Type III export protein 54.6 47 0.0016 22.5 7.7 77 135-220 21-97 (115)
282 2ijq_A Hypothetical protein; s 53.6 68 0.0023 24.0 8.0 55 417-471 42-104 (161)
283 2p58_C Putative type III secre 53.6 49 0.0017 22.4 8.5 45 170-220 54-98 (116)
284 4a1g_A Mitotic checkpoint seri 53.1 67 0.0023 23.8 9.1 54 102-155 82-136 (152)
285 3ltm_A Alpha-REP4; protein eng 53.1 79 0.0027 24.6 21.1 154 47-218 30-183 (211)
286 1bpo_A Protein (clathrin); cla 52.8 1.3E+02 0.0046 27.2 12.1 107 24-138 341-447 (494)
287 2d2s_A Exocyst complex compone 52.1 78 0.0027 25.6 8.3 22 19-40 25-46 (235)
288 3ubw_A 14-3-3E, 14-3-3 protein 51.9 98 0.0034 25.4 11.9 49 424-472 173-229 (261)
289 2r9g_A AAA ATPase, central reg 51.6 84 0.0029 24.5 9.7 94 378-472 20-121 (204)
290 2zu6_B Programmed cell death p 51.3 89 0.003 26.5 8.8 99 378-477 171-280 (307)
291 2wvi_A Mitotic checkpoint seri 50.8 77 0.0026 23.8 8.9 51 280-330 79-130 (164)
292 4aez_C MAD3, mitotic spindle c 50.5 36 0.0012 27.1 5.8 52 424-475 131-183 (223)
293 3bu8_A Telomeric repeat-bindin 49.0 80 0.0027 24.9 7.3 50 387-436 87-143 (235)
294 4b4t_S RPN3, 26S proteasome re 48.7 68 0.0023 29.6 8.1 65 261-325 231-299 (523)
295 3bge_A Predicted ATPase; struc 48.7 93 0.0032 24.2 8.5 94 378-472 13-115 (201)
296 2d2s_A Exocyst complex compone 47.8 1.1E+02 0.0037 24.7 9.2 89 197-288 24-118 (235)
297 3bu8_A Telomeric repeat-bindin 46.6 1.1E+02 0.0036 24.2 9.3 31 9-39 14-46 (235)
298 1bpo_A Protein (clathrin); cla 44.8 1.8E+02 0.006 26.5 9.8 94 84-180 360-453 (494)
299 4ets_A Ferric uptake regulatio 42.6 71 0.0024 24.0 6.3 71 28-101 13-85 (162)
300 3ctd_A Putative ATPase, AAA fa 42.2 1.2E+02 0.0043 23.8 9.1 94 378-472 41-142 (213)
301 3uzd_A 14-3-3 protein gamma; s 42.0 1.4E+02 0.0048 24.3 12.5 48 424-471 148-203 (248)
302 3iqu_A 14-3-3 protein sigma; s 41.8 1.4E+02 0.0047 24.1 13.6 49 423-471 149-205 (236)
303 3mv2_A Coatomer subunit alpha; 41.6 1.7E+02 0.0057 25.0 10.7 49 102-150 187-237 (325)
304 3kea_A K1L; tropism, ANK repea 41.3 1.5E+02 0.0052 24.5 11.1 112 231-356 131-243 (285)
305 3hra_A Ankyrin repeat family p 39.8 1.2E+02 0.0042 23.0 9.7 19 424-442 155-173 (201)
306 2o03_A Probable zinc uptake re 39.7 82 0.0028 22.4 6.1 45 56-100 16-60 (131)
307 2ijq_A Hypothetical protein; s 38.4 1.2E+02 0.0042 22.6 7.1 15 133-147 88-102 (161)
308 2qx5_A Nucleoporin NIC96; mRNA 38.1 2.8E+02 0.0096 26.7 18.9 80 232-322 300-382 (661)
309 3jxi_A Vanilloid receptor-rela 38.1 70 0.0024 25.9 6.4 15 419-433 234-248 (260)
310 2xig_A Ferric uptake regulatio 37.0 1.2E+02 0.0042 22.2 7.3 24 197-220 32-55 (150)
311 1k1a_A B-cell lymphoma 3-encod 36.6 1.6E+02 0.0053 23.3 9.5 182 91-285 12-204 (241)
312 4gq2_M Nucleoporin NUP120; bet 36.6 3.6E+02 0.012 27.4 13.8 112 301-436 815-926 (950)
313 4ets_A Ferric uptake regulatio 36.2 1.1E+02 0.0038 22.9 6.5 43 126-168 38-82 (162)
314 4b4t_S RPN3, 26S proteasome re 36.0 2.7E+02 0.0091 25.8 10.7 66 120-185 231-299 (523)
315 2fe3_A Peroxide operon regulat 35.7 1.2E+02 0.0041 22.1 6.6 15 205-219 35-49 (145)
316 3mwm_A ZUR, putative metal upt 35.5 77 0.0026 23.0 5.4 45 55-99 18-62 (139)
317 3t8k_A Uncharacterized protein 35.1 92 0.0031 23.8 6.2 10 141-150 56-65 (186)
318 3bqo_A Telomeric repeat-bindin 34.8 61 0.0021 25.2 4.7 22 92-113 124-145 (211)
319 3bge_A Predicted ATPase; struc 33.8 1.7E+02 0.0057 22.8 7.8 33 274-306 20-52 (201)
320 4gq2_M Nucleoporin NUP120; bet 33.7 2.7E+02 0.0093 28.3 10.7 46 122-167 899-948 (950)
321 2r9g_A AAA ATPase, central reg 32.9 1.8E+02 0.006 22.8 8.9 55 273-328 26-85 (204)
322 2b7e_A PRE-mRNA processing pro 32.7 54 0.0019 19.6 3.2 29 424-452 3-31 (59)
323 2cos_A Serine/threonine protei 32.6 48 0.0016 19.2 2.9 18 451-468 29-48 (54)
324 2ion_A PDCD4, programmed cell 31.6 1.6E+02 0.0054 21.8 7.1 25 229-253 12-36 (152)
325 2xig_A Ferric uptake regulatio 31.3 1.5E+02 0.0053 21.7 8.2 35 133-167 39-73 (150)
326 3eyy_A Putative iron uptake re 31.3 1.5E+02 0.0052 21.5 6.6 32 136-167 33-64 (145)
327 1mzb_A Ferric uptake regulatio 31.3 1.1E+02 0.0037 22.0 5.6 55 44-99 12-67 (136)
328 2crb_A Nuclear receptor bindin 30.0 94 0.0032 20.5 4.3 23 411-433 19-41 (97)
329 3ctd_A Putative ATPase, AAA fa 29.8 2.1E+02 0.007 22.6 8.2 55 273-327 47-106 (213)
330 2fe3_A Peroxide operon regulat 29.5 1.6E+02 0.0056 21.3 8.3 16 99-114 35-50 (145)
331 3hra_A Ankyrin repeat family p 29.2 1.9E+02 0.0064 21.9 8.7 11 170-180 16-26 (201)
332 2fv2_A RCD1 required for cell 28.8 47 0.0016 27.2 3.4 53 420-472 186-239 (268)
333 2f6m_A Suppressor protein STP2 28.6 1E+02 0.0035 18.8 4.0 42 88-130 5-46 (65)
334 1ya0_A SMG-7 transcript varian 27.8 3.3E+02 0.011 25.1 9.2 79 87-167 154-232 (497)
335 1o9d_A 14-3-3-like protein C; 27.8 2.5E+02 0.0087 23.0 11.5 48 424-471 152-207 (260)
336 1wty_A Hypothetical protein TT 27.5 1.4E+02 0.0049 20.7 5.5 45 388-435 35-80 (119)
337 2w57_A Ferric uptake regulatio 27.5 1.8E+02 0.0062 21.3 7.2 29 138-166 35-63 (150)
338 1mzb_A Ferric uptake regulatio 27.4 1.7E+02 0.0058 20.9 7.3 25 91-115 23-48 (136)
339 2nsz_A Programmed cell death p 27.4 1.7E+02 0.0058 20.8 8.4 24 230-253 11-34 (129)
340 3pvs_A Replication-associated 27.4 3.5E+02 0.012 24.4 13.4 33 274-306 268-300 (447)
341 3kea_A K1L; tropism, ANK repea 26.7 2.7E+02 0.0091 22.9 9.4 13 61-73 39-51 (285)
342 3pvs_A Replication-associated 26.4 3.6E+02 0.012 24.3 14.1 21 344-364 268-288 (447)
343 2yru_A Steroid receptor RNA ac 26.1 1.4E+02 0.0048 20.9 5.0 42 107-148 48-89 (118)
344 3ltj_A Alpharep-4; protein eng 25.7 2.2E+02 0.0076 21.6 20.9 81 48-136 26-106 (201)
345 2br9_A 14-3-3E, 14-3-3 protein 25.1 2.7E+02 0.0092 22.4 12.3 48 424-471 147-202 (234)
346 3ltm_A Alpha-REP4; protein eng 24.9 2.4E+02 0.0081 21.7 20.6 142 83-241 31-172 (211)
347 2w57_A Ferric uptake regulatio 24.9 1.2E+02 0.0042 22.2 5.0 43 57-99 23-66 (150)
348 2pnn_A Transient receptor pote 24.2 2.5E+02 0.0086 22.7 7.5 54 58-111 18-80 (273)
349 2nsz_A Programmed cell death p 24.2 1.9E+02 0.0067 20.5 9.6 100 378-478 12-122 (129)
350 3mwm_A ZUR, putative metal upt 24.0 1.8E+02 0.0062 20.9 5.7 25 91-115 19-43 (139)
351 2ion_A PDCD4, programmed cell 23.9 2.2E+02 0.0075 21.0 8.2 99 378-477 14-123 (152)
352 3eyy_A Putative iron uptake re 23.9 2.1E+02 0.0072 20.8 6.7 54 44-99 13-66 (145)
353 2o03_A Probable zinc uptake re 23.6 1.4E+02 0.0049 21.1 5.0 22 199-220 18-39 (131)
354 1ug3_A EIF4GI, eukaryotic prot 23.1 2.2E+02 0.0076 24.5 7.0 25 299-323 14-38 (339)
355 3t5v_B Nuclear mRNA export pro 22.7 2.1E+02 0.0072 25.9 6.9 63 409-471 178-249 (455)
356 3mv2_A Coatomer subunit alpha; 22.3 3.7E+02 0.013 23.0 12.2 55 408-477 208-262 (325)
357 3ax2_A Mitochondrial import re 21.6 1.6E+02 0.0053 18.5 4.1 23 450-472 25-47 (73)
358 2etb_A Transient receptor pote 21.3 3.1E+02 0.011 21.8 8.7 25 59-83 8-32 (256)
359 3bqo_A Telomeric repeat-bindin 20.7 1.1E+02 0.0037 23.8 3.8 25 412-436 122-146 (211)
360 1ixm_A SPO0B, protein (sporula 20.5 1.4E+02 0.0049 23.1 4.7 70 388-468 15-84 (192)
361 1wgl_A TOLL-interacting protei 20.5 1.5E+02 0.005 17.7 3.9 18 98-115 36-53 (59)
362 3t8k_A Uncharacterized protein 20.4 2.8E+02 0.0097 20.9 10.2 126 340-470 44-178 (186)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-39 Score=314.82 Aligned_cols=439 Identities=9% Similarity=-0.001 Sum_probs=378.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+..++..+.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|++++|..+|+.+... .++..+++.++.+
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLD-----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHh-----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 46788889999999999999999982 3568788999999999999999999999998654 4588999999999
Q ss_pred HhccCChhhHHHHHHHHHhc---------------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEF---------------GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV-ASL 158 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 158 (485)
|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+.+ |+. ..+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHH
Confidence 99999999999999954321 223468899999999999999999999999999865 432 222
Q ss_pred HHH--------------------------------------HHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH
Q 011463 159 NVL--------------------------------------IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200 (485)
Q Consensus 159 ~~l--------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (485)
..+ +..+.+. |++++|.++|+++.+. +++..+++.++.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE-DELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH-HHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc-chHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 222 3333455 8899999999999876 5799999999999
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHH
Q 011463 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280 (485)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 280 (485)
|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999987653 478889999999999999999999999998764 55788999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
.++|+++.+... .+..+|..++.+|.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 393 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999988643 378899999999999999999999999999875 558889999999999999999999999999875
Q ss_pred CCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhC----CCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR----SISVD--SLTYSSLITCFCKKGDIHKSARIVDEL 433 (485)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 433 (485)
. +.+... ++.+...+... ++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++
T Consensus 471 ~-~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 471 F-QYDPLL-------LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp C-CCCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C-CCChHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3 123333 34888888888 999999999999875 55666 689999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 434 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
.+.+ +.+..+|..++.+|.+.|++++|.++++++++.++..+..
T Consensus 543 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 543 LLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp HHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 9874 5578899999999999999999999999999987655443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-37 Score=299.20 Aligned_cols=425 Identities=11% Similarity=0.042 Sum_probs=354.0
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhh
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (485)
..|.+..+...+.... .+++..|..++..+.+.|++++|..+|+++.... |+..++..++.+|.+.|++++
T Consensus 65 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS-------LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccCccCCCCCccccch-------HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHH
Confidence 3444555555544333 4678899999999999999999999999998654 577889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhc
Q 011463 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI---------------GIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~ 168 (485)
|..+|+++... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+++.++..+.+.
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 99999998653 688999999999999999999999999953211 2233578899999999998
Q ss_pred CCChHHHHHHHHhhhhCCCCCCHHhHHHH--------------------------------------HHHHHHcCCHhHH
Q 011463 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTL--------------------------------------INGLCRLGKIYEA 210 (485)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~~~a 210 (485)
|++++|.++|+++.+.+.. +...+..+ +..|.+.|++++|
T Consensus 214 -g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 214 -SNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp -TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 9999999999999987533 34443333 4456678899999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
.++|+++.+. +++..+++.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+...
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 292 EDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9999999875 5799999999999999999999999999999875 447888999999999999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccc
Q 011463 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370 (485)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (485)
. +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...|.
T Consensus 369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 4 4478899999999999999999999999998764 4568899999999999999999999999999864 22344444
Q ss_pred chhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hh
Q 011463 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLPD--EG 443 (485)
Q Consensus 371 ~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~ 443 (485)
.+...+... ++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..
T Consensus 446 -------~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 446 -------FLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp -------HHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 788888888 999999999999987655 7889999999999999999999999999876 66787 67
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
+|..++.+|.+.|++++|.+.++++++.+...
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999987443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.4e-30 Score=234.21 Aligned_cols=382 Identities=14% Similarity=0.113 Sum_probs=271.7
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
++..+.+.|++++|++.++.+.. ..|.++..+..+...+...|++++|...++.+.+..+. +...|..+...+.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 45667888889999888888872 33556777778888888888888888888888887654 77888888888888
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
.|++++|+..|+++.+.. |.+..+|..+..++...|++++|.+.|+++.+.. |+.......+..+....|++++|.+
T Consensus 80 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 888888888888888764 4456678888888888888888888888888754 5544444333333333388888888
Q ss_pred HHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011463 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 257 (485)
.|+++.+..+. +..+|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 157 ~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 157 CYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 88888776422 56777788888888888888888888877653 2245667777777777777777777777776653
Q ss_pred CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHH
Q 011463 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337 (485)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (485)
+.+..++..+..++.+.|++++|.+.++++.+..+. ++.++..+..++.+.|++++|...++++.+.. +.+..++..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 234666677777777777777777777777765332 45666777777777777777777777776653 4566667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHH
Q 011463 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417 (485)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 417 (485)
...+...|++++|...++++.+. .|+ +..++..++.+|
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------------~~~~~~~l~~~~ 349 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEV--FPE----------------------------------------FAAAHSNLASVL 349 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTS--CTT----------------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCC----------------------------------------cHHHHHHHHHHH
Confidence 77777777777777777766542 222 445667777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC
Q 011463 418 CKKGDIHKSARIVDELVLDGCLP-DEGTWSAVMTALWDRR 456 (485)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 456 (485)
.+.|++++|.+.|+++.+. .| +...+..+...+...|
T Consensus 350 ~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 8888888888888887764 34 3445555555555444
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-28 Score=225.97 Aligned_cols=367 Identities=16% Similarity=0.121 Sum_probs=283.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
+...+.+.|++++|.+.++.+.+..|. +...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 355677888888888888888887655 66777778888888888888888888887764 5577888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHH
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (485)
+++|.+.|+++.+.. +.+...+..+...+... |++++|.+.++++.+.++. +...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 888888888888754 22344677777777777 8888888888888776432 45567777778888888888888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 011463 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295 (485)
Q Consensus 216 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (485)
++.+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++++....+. +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 887653 2356777788888888888888888888887764 335667777777888888888888888877775332 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhh
Q 011463 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375 (485)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (485)
..++..+..++...|++++|...++++.+.+ +.+..++..+..++.+.|++++|...++++.+.. |+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------- 303 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PT---------- 303 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TT----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc----------
Confidence 6677777778888888888888888877764 3456677777777778888888877777776521 21
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 376 HNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455 (485)
Q Consensus 376 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 455 (485)
+..++..+...+...|++++|.+.++++.+. .+.+..++..++.++.+.
T Consensus 304 ------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 304 ------------------------------HADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp ------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTT
T ss_pred ------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 5667888999999999999999999999976 244567888999999999
Q ss_pred CcHHHHHHHHHHHHHcCCC
Q 011463 456 RKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~ 474 (485)
|++++|.+.++++++..+.
T Consensus 353 g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHhhCCC
Confidence 9999999999999986543
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4e-30 Score=238.75 Aligned_cols=204 Identities=17% Similarity=0.268 Sum_probs=143.9
Q ss_pred HHHHHHHHhhcCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC---------HHH
Q 011463 69 AEDLLDRVNKEKCDITE-DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ---------LKL 138 (485)
Q Consensus 69 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 138 (485)
+..+.+.+.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|++||..+|+.+|.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555444333 34677777777777777777777777777777777777777777766543 567
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011463 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (485)
|.++|++|.+.|+.||..+|+.++..+++. |++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAK-DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777 7777777777777777777777777777777777777777777777777
Q ss_pred HCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011463 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273 (485)
Q Consensus 219 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (485)
+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.+..|+..||+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777776654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.7e-30 Score=237.72 Aligned_cols=206 Identities=17% Similarity=0.216 Sum_probs=175.0
Q ss_pred hHHHHHHHHHhcCCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC---------h
Q 011463 103 DAMRVFDKMKEFGCEPTPK-SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT---------M 172 (485)
Q Consensus 103 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---------~ 172 (485)
.+..+.+++.+.+..+.+. .++.+|..|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++. +. +
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~-~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA-EAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC-CCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC-CchhhhhhcchH
Confidence 4455666676666655544 57888999999999999999999999999999999999999998765 43 6
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 252 (485)
+.|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309 (485)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (485)
.+.|+.||..||+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.9e-27 Score=223.05 Aligned_cols=440 Identities=10% Similarity=-0.013 Sum_probs=244.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+...+..+.+.|++++|+..|++++.. .|++.+|..++.++...|++++|.+.++++.+.++. +..++..++.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-----CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 345678889999999999999999932 268999999999999999999999999999998765 77899999999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 174 (485)
+.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+......-....... .....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ-ENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc-cCCch
Confidence 999999999999999998875 4455555555555554444444444333222211111111111000000000 01111
Q ss_pred HHHHHHhhhhCC---------CCCCHHhHHHHHHHHHH---cCCHhHHHHHHHHHHH-----CCC--------CCChhhH
Q 011463 175 AFKIFREMPNRG---------CTPDSYTYGTLINGLCR---LGKIYEAKELFKEMET-----KAC--------SPTVVTY 229 (485)
Q Consensus 175 a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 229 (485)
...+...+.... .+.+...+......+.. .|++++|...|+++.+ ... +.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 111111110000 01123333333333333 5666666666666554 210 1123445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309 (485)
Q Consensus 230 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (485)
..+...+...|++++|...++.+.+... +...+..+..++...|++++|...++.+..... .+..++..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHh
Confidence 5555556666666666666666655432 255555556666666666666666666655432 2445555566666666
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-Ch
Q 011463 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388 (485)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 388 (485)
|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. |+.. .++..+...+... ++
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~------~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAP------EVPNFFAEILTDKNDF 388 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCS------HHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCH------HHHHHHHHHHHHCCCH
Confidence 66666666666665543 2344555556666666666666666666655432 2211 1122444444444 66
Q ss_pred hHHHHHHHHHHhCCCcc-c----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHH
Q 011463 389 NRAFQVYLSMRNRSISV-D----SLTYSSLITCFCK---KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 460 (485)
++|...++++....+.. + ...+..+..++.. .|++++|...++++.+.. +.+...+..+..++.+.|++++
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHH
Confidence 66666666655432210 1 2255566666666 666666666666666542 2334455556666666666666
Q ss_pred HHHHHHHHHHcCCCc
Q 011463 461 AAELLLLELMNKCVE 475 (485)
Q Consensus 461 A~~~~~~~~~~~~~~ 475 (485)
|.+.++++++.+...
T Consensus 468 A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 468 AITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHhcccc
Confidence 666666666655433
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=8e-25 Score=209.48 Aligned_cols=329 Identities=16% Similarity=0.105 Sum_probs=186.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+..++..+.+.|++++|+..|+.++. ..|.++.++..++.++...|++++|.+.++++...++. +...+..+..+
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIE----LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 45567788889999999999999883 33567888999999999999999999999999888765 78888889999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHH------
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI------GIQPCVASLNVLI------ 162 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll------ 162 (485)
+...|++++|+..|+.+ .. .|+. ....+..+...+....|...++.+... ...|+.......+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999633 22 1221 222233445555567778887777542 1123322222111
Q ss_pred -----------------------HHHHhc--------CCChHHHHHHHHhhhhCCCCCC-------HHhHHHHHHHHHHc
Q 011463 163 -----------------------KALCKN--------SGTMDAAFKIFREMPNRGCTPD-------SYTYGTLINGLCRL 204 (485)
Q Consensus 163 -----------------------~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 204 (485)
..+... .|++++|..+++.+.+.... + ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 111110 02445555555555544221 1 11334444455555
Q ss_pred CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHH
Q 011463 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (485)
|++++|...|++..+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5555555555555543 2334455555555555555555555555555442 224445555555555555555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+++.+.... +...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+
T Consensus 334 ~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 334 QKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555554222 34445555555555555555555555555442 23344555555555555555555555555544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=5.6e-24 Score=198.90 Aligned_cols=321 Identities=11% Similarity=0.046 Sum_probs=250.1
Q ss_pred HHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 011463 30 KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109 (485)
Q Consensus 30 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 109 (485)
.+...+..+. ...|.++..+..++..+.+.|++++|..+|+.+....+. +...+..++.++...|++++|+..|+
T Consensus 10 ~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 10 GVDLGTENLY----FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccc----cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444555555 233566778888899999999999999999999887654 78888899999999999999999999
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHhcCCChH
Q 011463 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV----ASLNVL------------IKALCKNSGTMD 173 (485)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l------------l~~~~~~~~~~~ 173 (485)
++.+.+ +.+..++..+..++...|++++|.+.|+++.+.. |+. ..+..+ ...+... |+++
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~ 160 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYT 160 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHH
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHH
Confidence 998875 4567888889999999999999999999998754 544 333333 3336666 9999
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
+|...++.+.+... .+...+..+..+|.+.|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...|+.+.
T Consensus 161 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999887643 378889999999999999999999999988753 3467888999999999999999999999998
Q ss_pred hCCCCCCHhhHHHH------------HHHHHcCCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHH
Q 011463 254 SKGVEPNVFTYSSL------------MDGLCKGGCSSQAMELLQMMISKRHRPN----IVTYSTLLNGLCKEGKLQEAVE 317 (485)
Q Consensus 254 ~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 317 (485)
+.. +.+...+..+ ...+.+.|++++|...++.+.+..+. + ...+..+..++.+.|++++|..
T Consensus 239 ~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 763 2244444444 77888899999999999998885332 2 3467788888999999999999
Q ss_pred HHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 011463 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 366 (485)
.++++.... +.+..++..+..+|...|++++|...++++.+. .|+.
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~ 362 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NEND 362 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Ccch
Confidence 999987753 457888999999999999999999999999873 4554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.2e-23 Score=192.96 Aligned_cols=313 Identities=12% Similarity=0.078 Sum_probs=262.6
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..++..+.+.|++++|+..|+.++. ..|.+..++..++.++...|++++|.+.|+++.+.++. +...+..++.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 456678889999999999999999983 34667899999999999999999999999999998765 7889999999
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCH---hhHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTP---KSYITV------------LAILVEENQLKLAFRFYRHMREIGIQPCVASL 158 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (485)
+|.+.|++++|...|+++.+.+ +.+. ..+..+ ...+...|++++|...|+++.+.. +.+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 9999999999999999999864 3334 555555 444889999999999999999865 3466778
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHH------
Q 011463 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL------ 232 (485)
Q Consensus 159 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 232 (485)
..+...+... |++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.... +.+...+..+
T Consensus 181 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 181 ELRAECFIKE-GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHT-TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 8888888887 99999999999998864 3378899999999999999999999999998753 2244444444
Q ss_pred ------HHHHHccCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHH
Q 011463 233 ------INGLCQSKSVEEAMRLFEEMRSKGVEPN-----VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301 (485)
Q Consensus 233 ------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (485)
...+...|++++|...|+.+.+.. |+ ...+..+..++.+.|++++|...++.+.+.. +.+..++..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998863 33 3478888999999999999999999998864 337889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHH
Q 011463 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340 (485)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (485)
+..+|...|++++|...++++.+.. +-+...+..+..+
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 9999999999999999999998864 3356666666533
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-23 Score=198.07 Aligned_cols=411 Identities=10% Similarity=-0.025 Sum_probs=296.3
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
....+...+..+.+.|++++|+..|+++...+ |+...+..++.++.+.|++++|+..++++.+.+ |.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34567888899999999999999999999986 578999999999999999999999999999875 557789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
++...|++++|...|+++.+.+ +++.......+..+... .....+.+.+..+...+..|+......-...........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNK-QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHH-HHHHHHTTC---------------------------CCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999999999876 33444444444444433 233333333322222211111111111111111111111
Q ss_pred HHHHHHHHHHHCCC---------CCChhhHHHHHHHHHc---cCCHHHHHHHHHHHHh-----CCC--------CCCHhh
Q 011463 209 EAKELFKEMETKAC---------SPTVVTYTSLINGLCQ---SKSVEEAMRLFEEMRS-----KGV--------EPNVFT 263 (485)
Q Consensus 209 ~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~ 263 (485)
....+...+..... +.+...+......+.. .|++++|...++++.+ ... +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 11111111111111 1124444445555554 8999999999999987 311 223567
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (485)
+..+...+...|++++|...++.+.+.... ...+..+..++...|++++|...++++.... +.+..++..+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 788888999999999999999999987544 8888899999999999999999999998874 4577889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCC
Q 011463 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422 (485)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (485)
.|++++|...++++.+.. |+.. .++..+...+... ++++|...++++.+..+. +...+..+...+...|+
T Consensus 317 ~~~~~~A~~~~~~~~~~~--~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD--PENI------FPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKND 387 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC--SSCS------HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHhC--hhhH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCC
Confidence 999999999999998854 4321 1233666777777 999999999999886554 67889999999999999
Q ss_pred HHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHh---cCcHHHHHHHHHHHHHcCCCcc
Q 011463 423 IHKSARIVDELVLDGC-LPD----EGTWSAVMTALWD---RRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 423 ~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
+++|...++++.+..- .++ ...+..++.++.. .|++++|.+.++++++.....+
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence 9999999999987521 111 2378888999999 9999999999999999765433
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.9e-22 Score=192.93 Aligned_cols=403 Identities=12% Similarity=0.065 Sum_probs=285.8
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
....+..++..+.+.|++++|.+.|+++....+. +...+..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 3467888899999999999999999999998865 88999999999999999999999999999875 557889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC------CCCCHHh---------
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG------CTPDSYT--------- 193 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~--------- 193 (485)
++...|++++|...|+ ..... |+... ..+..+... +....+...++.+.... ..|+...
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~--~~~~~--~~~~~~~~~-~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLN--GDFDG--ASIEPMLER-NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHH-HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHH-HHhcC--CCCCh--HHHHHHHHH-HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999996 43322 33221 112223333 55567787887775531 1122211
Q ss_pred ---------------------HHHHHHHHHHc--------CCHhHHHHHHHHHHHCCCCCC-------hhhHHHHHHHHH
Q 011463 194 ---------------------YGTLINGLCRL--------GKIYEAKELFKEMETKACSPT-------VVTYTSLINGLC 237 (485)
Q Consensus 194 ---------------------~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~ 237 (485)
...+...+... |++++|..+|+++.+.... + ..++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 12222222111 3678888888888765322 2 224666667788
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011463 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317 (485)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 317 (485)
..|++++|...++.+.+. .|+...+..+...+...|++++|...++.+.+.... +..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 888999999999988876 445777888888888999999999999988876433 67788888888889999999999
Q ss_pred HHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHH
Q 011463 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~ 396 (485)
.++++.+.. +.+...+..+..++...|++++|...++++.+.. |+.. .++..+...+... ++++|...|+
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLP------EVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCT------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh------HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999888764 4456788888888999999999999999888743 4322 1223666666666 8899999998
Q ss_pred HHHhCCCcc-----chhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----Cc
Q 011463 397 SMRNRSISV-----DSLTYSSLITCFCKK----------GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR----RK 457 (485)
Q Consensus 397 ~~~~~~~~~-----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~ 457 (485)
++.+..+.. ....+.....++... |++++|...|+++.+. .|+.. .....+... |+
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~---~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSE---QAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCH---HHHHHHHHHHHHTTC
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCH---HHHHHHHHHHHHhcc
Confidence 887643221 112234445667777 8999999999998875 34432 233333344 78
Q ss_pred HHHHHHHHHHHHHcCCCccc
Q 011463 458 MRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 458 ~~~A~~~~~~~~~~~~~~~~ 477 (485)
+++|.+.++++++.....++
T Consensus 478 ~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 478 IDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHHHHHhCCCcHH
Confidence 88999999999887654443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.6e-20 Score=169.84 Aligned_cols=298 Identities=11% Similarity=0.054 Sum_probs=181.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..++..+...|++++|+..|+.++. ..|.++.++..++..+...|++++|...++++....+. +...+..+...+
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 4566777888888888888888872 33556778888888888888888888888888877654 667788888888
Q ss_pred hccCChhhHHHHHHHHHhcCCC---CCHhhHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCE---PTPKSYITV------------LAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (485)
...|++++|...|+++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 88888888888888887753 2 234444444 355666667777777766666543 234445555
Q ss_pred HHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHH----------
Q 011463 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT---------- 230 (485)
Q Consensus 161 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 230 (485)
+...+... |++++|...++.+.+.. +.+...+..+..++...|++++|...|++..+... .+...+.
T Consensus 160 ~~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKE-GEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHH
Confidence 55555555 66666666666666553 22556666666666666666666666666655421 1222221
Q ss_pred --HHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 231 --SLINGLCQSKSVEEAMRLFEEMRSKGVEPNV----FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304 (485)
Q Consensus 231 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (485)
.+...+.+.|++++|...++.+.+.... +. ..+..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 1234455556666666666555544211 12 112334455555556666666555555542 224455555555
Q ss_pred HHHhcCCHHHHHHHHHHHhHC
Q 011463 305 GLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~ 325 (485)
++...|++++|...++++.+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 555555666665555555554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=3e-20 Score=167.96 Aligned_cols=306 Identities=12% Similarity=0.055 Sum_probs=257.1
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
++..+..++..+...|++++|.+.|+++....+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4567888999999999999999999999998765 78899999999999999999999999998874 457789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC---CH-HHHHHH------------HHHHHhcCCChHHHHHHHHhhhhCCCCCCHH
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQP---CV-ASLNVL------------IKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~-~~~~~l------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (485)
++...|++++|...++++.+.. | +. ..+..+ ...+... |++++|...++.+.+... .+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~ 155 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEVCV-WDAE 155 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC-CchH
Confidence 9999999999999999999854 5 33 333333 3555666 999999999999988753 3788
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH-------
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS------- 265 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 265 (485)
.+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH
Confidence 99999999999999999999999998863 4477889999999999999999999999998763 22333333
Q ss_pred -----HHHHHHHcCCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHH
Q 011463 266 -----SLMDGLCKGGCSSQAMELLQMMISKRHRPNI----VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336 (485)
Q Consensus 266 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (485)
.+...+.+.|++++|...++.+.+.... +. ..+..+..++...|++++|...+++..+.. +.+..++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 2366788999999999999999886433 33 234557788999999999999999998864 557889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNR 366 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 366 (485)
+..++...|++++|...++++.+. .|+.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~--~p~~ 339 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEH--NEND 339 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 999999999999999999999974 4553
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=1.1e-18 Score=164.33 Aligned_cols=397 Identities=13% Similarity=0.078 Sum_probs=312.6
Q ss_pred HHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHh----cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCC
Q 011463 29 NKALVIFDSATAEYANGFRHDNSTFSLMISKLVS----ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR----VHR 100 (485)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 100 (485)
..++..++... . +.++.++..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++
T Consensus 24 ~~~~~~~~~~a---~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 24 NVNLEQLKQKA---E---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp -CCHHHHHHHH---H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred hHHHHHHHHHH---H---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 33456666555 2 3478888888999988 899999999999998863 67788889999988 899
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCCh
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK----NSGTM 172 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~ 172 (485)
+++|.+.|++..+.| ++..+..+...|.. .+++++|...|++..+.| +...+..+...+.. . +++
T Consensus 95 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~-~d~ 167 (490)
T 2xm6_A 95 YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT-RDY 167 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-CCH
Confidence 999999999998865 77888888888888 889999999999999876 45556666666655 4 899
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ----SKSVEE 244 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 244 (485)
++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998875 67888899999988 899999999999998864 56677788888876 789999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHH
Q 011463 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCK----GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE-----GKLQEA 315 (485)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a 315 (485)
|...|++..+.+ +...+..+...|.. .++.++|..+|++..+.+ ++..+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998865 45666777777777 899999999999998764 566777788888877 899999
Q ss_pred HHHHHHHhHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhc----C-C
Q 011463 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIG---KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----T-D 387 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-~ 387 (485)
...+++..+.+ +...+..+...|...| ++++|.++|++..+.+ +.. ++..+...+.. . +
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~-------a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKA-------AQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHH-------HHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHH-------HHHHHHHHHHcCCCCCCC
Confidence 99999999875 5667788888887766 7899999999998864 222 22266666666 4 9
Q ss_pred hhHHHHHHHHHHhCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhcCcHHHH
Q 011463 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCK----KGDIHKSARIVDELVLDGCL-P-DEGTWSAVMTALWDRRKMRQA 461 (485)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A 461 (485)
+++|.+.|++..+.+ ++..+..+...|.. .++.++|...|++..+.+.. | +......+...+. .+.++|
T Consensus 383 ~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a 457 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQA 457 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHH
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHH
Confidence 999999999999875 56788889999988 89999999999999987532 2 2233333333222 234444
Q ss_pred HHHHHHHHHc
Q 011463 462 AELLLLELMN 471 (485)
Q Consensus 462 ~~~~~~~~~~ 471 (485)
.+...+.+++
T Consensus 458 ~~~a~~~~~~ 467 (490)
T 2xm6_A 458 ELLSQQYIEK 467 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=2.9e-18 Score=161.48 Aligned_cols=367 Identities=12% Similarity=0.055 Sum_probs=302.5
Q ss_pred chHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHH
Q 011463 67 RPAEDLLDRVNKEKCDITEDIFLSICRGYGR----VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKL 138 (485)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 138 (485)
..+.+.+....+. .+...+..+...|.. .+++++|+..|++..+.| ++..+..+...|.. .++.++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3445666666554 377888888888888 899999999999998864 77888889999998 999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHH
Q 011463 139 AFRFYRHMREIGIQPCVASLNVLIKALCK----NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR----LGKIYEA 210 (485)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 210 (485)
|.++|++..+.| +...+..+...+.. . +++++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK-VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 999999999876 45556666666665 5 89999999999998875 67788888888887 7899999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCChHHHHH
Q 011463 211 KELFKEMETKACSPTVVTYTSLINGLCQ----SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK----GGCSSQAME 282 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 282 (485)
.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999998864 67788888888887 899999999999999875 56677778888875 889999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhc-----CCHHHHHHH
Q 011463 283 LLQMMISKRHRPNIVTYSTLLNGLCK----EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI-----GKYQEAANF 353 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~ 353 (485)
+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|... +++++|..+
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 999998864 56677777778877 899999999999998765 566778888888877 899999999
Q ss_pred HHHHHHCCCCCCcccccchhhhHHHHHHHHhc---C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh----cCCHHH
Q 011463 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK---T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK----KGDIHK 425 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 425 (485)
+++..+.+.. ..+ ..+...+.. . ++++|.+.|++..+.+ ++..+..+...|.. .+++++
T Consensus 319 ~~~a~~~~~~---~a~-------~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 319 YTKSAEQGDA---TAQ-------ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHTTCH---HHH-------HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHhcCCH---HHH-------HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 9999886521 111 144444443 2 7899999999999874 67888899999988 899999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCC
Q 011463 426 SARIVDELVLDGCLPDEGTWSAVMTALWD----RRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 426 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 474 (485)
|.+.|++..+.| +...+..+...|.. .+++++|.++++++++.+..
T Consensus 386 A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 386 AAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999999875 46677778888887 89999999999999998744
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=5.3e-19 Score=168.28 Aligned_cols=412 Identities=11% Similarity=0.067 Sum_probs=254.3
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.+..+|..++.. .+.|++++|..+|++++...|. +...|..++..+.+.|++++|..+|++..... |+...|..+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 3455555555552 4555566666666665555433 45555555555555566666666666555532 454455444
Q ss_pred HHHH-HHcCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCCChHHHHHHHHhhhhCCCCCC
Q 011463 127 LAIL-VEENQLKLAFR----FYRHMREI-GIQP-CVASLNVLIKALCK---------NSGTMDAAFKIFREMPNRGCTPD 190 (485)
Q Consensus 127 ~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~ 190 (485)
+... ...|+.+.|.+ +|++.... |..| +...|...+..... . |+++.|..+|++..+......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN-QRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH-HHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH-hHHHHHHHHHHHHHhchhhhH
Confidence 4322 23344444333 44444332 3222 23333333333222 2 555666666666555211111
Q ss_pred HHhHHHHHHHH-------------HHcCCHhHHHHHHHHHH------HCC---CCCC--------hhhHHHHHHHHHcc-
Q 011463 191 SYTYGTLINGL-------------CRLGKIYEAKELFKEME------TKA---CSPT--------VVTYTSLINGLCQS- 239 (485)
Q Consensus 191 ~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~ll~~~~~~- 239 (485)
...|....... .+.+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 12222211110 12345666666666532 111 2333 13444444322221
Q ss_pred ---CCH----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-------CCChH-------HHHHHHHHHHhCCCCCChhh
Q 011463 240 ---KSV----EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK-------GGCSS-------QAMELLQMMISKRHRPNIVT 298 (485)
Q Consensus 240 ---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~ 298 (485)
++. ..+..+|++..... +.+...|..++..+.+ .|+++ +|..++++.++.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 222 46778888888763 4467788888887775 79987 89999999987323346888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCC-H-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhH
Q 011463 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD-A-GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376 (485)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
+..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|.++|++..+. .|..... .+.
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~----~~~ 395 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHV----YVT 395 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHH----HHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHH----HHH
Confidence 899999999999999999999999986 443 3 58888888889999999999999999874 3332111 011
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHH
Q 011463 377 NTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-CLPD--EGTWSAVMTALW 453 (485)
Q Consensus 377 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~ 453 (485)
...+......++++|..+|++..+..+. +...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1222222233899999999999886544 67899999999999999999999999999873 2232 337878888888
Q ss_pred hcCcHHHHHHHHHHHHHcCC
Q 011463 454 DRRKMRQAAELLLLELMNKC 473 (485)
Q Consensus 454 ~~g~~~~A~~~~~~~~~~~~ 473 (485)
..|+.+.+..+.+++++.-+
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTH
T ss_pred HcCCHHHHHHHHHHHHHHCc
Confidence 89999999999999988654
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=5.1e-20 Score=164.42 Aligned_cols=296 Identities=11% Similarity=0.024 Sum_probs=218.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHH
Q 011463 45 GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124 (485)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 124 (485)
..+.++..+..++..+...|++++|.++++++....+. +...+..++..+...|++++|...++++.+.. +.+...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 44566677777788888888888888888888877654 55667777777788888888888888887764 44677778
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 125 TVLAILVEEN-QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 125 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
.+...+...| ++++|.+.|+++.+.. +.+...+..+...+... |++++|...++++.+.... +...+..+...+..
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 8888888888 8888888888887754 23355666666677776 8888888888888776433 45566668888888
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHcCC
Q 011463 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG--------VEPNVFTYSSLMDGLCKGG 275 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~ 275 (485)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..++...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 888888888888887753 3356777888888888888888888888876531 1334567788888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHH-HhcCCHH
Q 011463 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF-CDIGKYQ 348 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 348 (485)
++++|...++.+.+.... +...+..+..++...|++++|...+++..+.. +.+...+..+..++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 888888888888876433 67778888888888899999998888887764 44667777777776 4555543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.1e-19 Score=162.17 Aligned_cols=290 Identities=13% Similarity=0.039 Sum_probs=243.4
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
-.....+..+...|++++|+++|+.+.. ..|.+...+..++..+...|++++|...++++.+..+. +...+..+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVME----KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 3455678888999999999999999983 33556777888889999999999999999999998765 778899999
Q ss_pred HHHhccC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 93 RGYGRVH-RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 93 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
..+...| ++++|...|++..+.. +.+...|..+..++...|++++|.+.++++.+.. +.+...+..+...+... |+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT-NN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT-TC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH-hh
Confidence 9999999 9999999999998865 4567889999999999999999999999999865 22345566677777777 99
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC--------CCCChhhHHHHHHHHHccCCHH
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA--------CSPTVVTYTSLINGLCQSKSVE 243 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~ 243 (485)
+++|...++++.+... .+...+..+...+...|++++|...+++..+.. .+.....+..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999998753 378899999999999999999999999987642 1334678899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCCHH
Q 011463 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL-CKEGKLQ 313 (485)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 313 (485)
+|...+++..+.. +.+...+..+..++.+.|++++|.+.++++.+..+ .+...+..+..++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 9999999998874 44678889999999999999999999999988643 3677777777777 4555543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=3.4e-20 Score=168.29 Aligned_cols=310 Identities=13% Similarity=0.029 Sum_probs=171.0
Q ss_pred HHccCCHHHHHH-HHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 22 IRAEKDVNKALV-IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 22 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
+...|++++|+. .|+++..........+...+..++..+...|++++|...|+++.+..+. +...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 334566666666 6665552101111112345666666677777777777777777666544 56666666677777777
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 180 (485)
+++|+..|+++.+.+ +.+..++..+..++...|++++|.+.++++.+.. |+........ +....
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-------~~~~~------ 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-------EEGAG------ 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH-------HHHhh------
Confidence 777777777766654 3456666666667777777777777777766643 3221111000 00000
Q ss_pred hhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011463 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP-TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259 (485)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 259 (485)
. .. ....+..+.. +...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+.. +.
T Consensus 178 -~----~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 00 0000111222 226666667777666666542211 35566666666667777777777776666542 33
Q ss_pred CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC----------C
Q 011463 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK----------P 329 (485)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~ 329 (485)
+..++..+...+...|++++|...++++.+..+ .+..++..+..+|...|++++|...++++.+.... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 456666666777777777777777777666532 25566666777777777777777777766553211 1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 330 DAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
...+|..+..++...|++++|..++++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1566777777777777777777666543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.1e-19 Score=164.88 Aligned_cols=273 Identities=12% Similarity=0.012 Sum_probs=175.4
Q ss_pred hcCCcchHHH-HHHHHhhcCCC---CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHH
Q 011463 62 SANQFRPAED-LLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137 (485)
Q Consensus 62 ~~g~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (485)
..|++++|.+ .+++.....+. .+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 66655443322 123445566666666677777777776666653 345556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
+|...++++.+.. +.+...+..+...+... |++++|...++++.+.... +...+..+... .. .
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 6666666666543 22444455555555554 6666666666665554221 11111111000 00 0
Q ss_pred HHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh
Q 011463 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP-NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296 (485)
Q Consensus 218 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (485)
..+. ..+.. +..+...|++++|...++++.+..... +..++..+...+...|++++|...++++....+ .+.
T Consensus 179 ----~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~ 251 (368)
T 1fch_A 179 ----AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDY 251 (368)
T ss_dssp ------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred ----hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCH
Confidence 0000 01112 233338899999999999998864221 578899999999999999999999999988743 367
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
.++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999998864 557889999999999999999999999999874
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.1e-17 Score=159.18 Aligned_cols=390 Identities=10% Similarity=0.033 Sum_probs=278.6
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011463 73 LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ 152 (485)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (485)
+++.++.+|. +...|..++.. .+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~P~-~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCCC-CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 5566666655 88899999984 78899999999999999863 6678899999999999999999999999999854
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHH----HHHhhhhC-CCCC-CHHhHHHHHHHHHH---------cCCHhHHHHHHHHH
Q 011463 153 PCVASLNVLIKALCKNSGTMDAAFK----IFREMPNR-GCTP-DSYTYGTLINGLCR---------LGKIYEAKELFKEM 217 (485)
Q Consensus 153 ~~~~~~~~ll~~~~~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 217 (485)
|+...|...+.......|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7877777777544333377777665 67766543 4333 56778777776655 68899999999999
Q ss_pred HHCCCCCChhhHHHHHHHH-------------HccCCHHHHHHHHHHHH------hCC---CCCC--------HhhHHHH
Q 011463 218 ETKACSPTVVTYTSLINGL-------------CQSKSVEEAMRLFEEMR------SKG---VEPN--------VFTYSSL 267 (485)
Q Consensus 218 ~~~~~~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l 267 (485)
.+.........|....... ...+++..|..++..+. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111122333222210 12455777777776532 211 2333 2345444
Q ss_pred HHHHHc----CCCh----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHhHC
Q 011463 268 MDGLCK----GGCS----SQAMELLQMMISKRHRPNIVTYSTLLNGLCK-------EGKLQ-------EAVEILDRMKLQ 325 (485)
Q Consensus 268 ~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 325 (485)
+..... .++. ..+..+|++++... +.++..|..++..+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 433322 1233 37788999988863 3377888888888775 78887 899999999863
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCc
Q 011463 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404 (485)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~ 404 (485)
-.+.+...|..++..+.+.|++++|..+|+++.+. .|+..+ .++...+..+.+. +.++|.++|++..+..+.
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT-----LVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCch-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 23556889999999999999999999999999984 454321 1223555555556 899999999999986433
Q ss_pred cchhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 405 VDSLTYSSLITC-FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 405 ~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
+...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|+.+|+++++.+..+++
T Consensus 389 -~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 389 -RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp -CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred -chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 33333333322 346899999999999999862 345778889999999999999999999999998655443
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1e-18 Score=158.31 Aligned_cols=234 Identities=10% Similarity=0.022 Sum_probs=143.0
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+...+..++..+.+.|++++|.+.|+++....+. +..++..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3445777788888888888888888888877655 67788888888888888888888888887764 445777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHH-----------HHHHHHHHHhcCCChHHHHHHHHhhhhCCCC-CCHHhHHH
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVAS-----------LNVLIKALCKNSGTMDAAFKIFREMPNRGCT-PDSYTYGT 196 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 196 (485)
++...|++++|...++++.+.. |+... +..+...+... |++++|...++++.+.... .+..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDS-SVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CC-HHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 8888888888888888887643 32211 11223333343 6666666666666554322 13555555
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCC
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 276 (485)
+..++...|++++|.+.|++..+.. +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|.+.|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 6666666666666666666555442 2244455555555555555555555555555442 2234455555555555555
Q ss_pred hHHHHHHHHHHHh
Q 011463 277 SSQAMELLQMMIS 289 (485)
Q Consensus 277 ~~~a~~~~~~~~~ 289 (485)
+++|...++++.+
T Consensus 297 ~~~A~~~~~~al~ 309 (365)
T 4eqf_A 297 YREAVSNFLTALS 309 (365)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.1e-17 Score=154.08 Aligned_cols=390 Identities=15% Similarity=0.025 Sum_probs=224.4
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhc-------CCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHhc-----C
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKE-------KCDI-TEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-----G 115 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 115 (485)
....|+.+..++...|++++|++.|++..+. ...| ...+|..+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567889999999999999999999887553 1112 4567888999999999999999999887642 1
Q ss_pred --CCCCHhhHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH---HHhcCCChHHHHHHHHhhhhCCC
Q 011463 116 --CEPTPKSYITVLAILVEE--NQLKLAFRFYRHMREIGIQPCVA-SLNVLIKA---LCKNSGTMDAAFKIFREMPNRGC 187 (485)
Q Consensus 116 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~---~~~~~~~~~~a~~~~~~~~~~~~ 187 (485)
......++.....++... +++++|.+.|++..+.. |+.. .+..+... +... ++.++|++.+++..+.+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~-~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNW-PPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHS-CCCCCTHHHHHHHHHHCS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhcCC
Confidence 012345566555555544 46889999999988854 5433 22222222 2334 777888888888877643
Q ss_pred CCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhh
Q 011463 188 TPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263 (485)
Q Consensus 188 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 263 (485)
. +...+..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +.+..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 3 56666666555544 456788899988887653 3466778888889999999999999999888763 335556
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (485)
+..+..+|...+.. ..... ...........+.++.|...++...+.. +.+..++..+...+..
T Consensus 284 ~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 66665554321100 00000 0000001111223566666676666543 3445566667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHH-HhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcC
Q 011463 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG-LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421 (485)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (485)
.|++++|...|++..+....|.... .++..+... .... +.++|+..|++..+..+. ..... +
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~ 410 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQ-----LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------K 410 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------H
T ss_pred hccHHHHHHHHHHHHhcCCCChHHH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------H
Confidence 7777777777777766443322211 011111111 1122 677777777777765332 21111 1
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
....+.+++++..+.+ +.+..+|..++.+|...|++++|++.|+++++.+...|+.
T Consensus 411 ~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 2234455555555542 4456677778888888888888888888888877665554
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=9e-19 Score=158.67 Aligned_cols=266 Identities=11% Similarity=-0.031 Sum_probs=212.7
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
...+..++..+.+.|++++|+..|++++. ..|.+..++..++..+...|++++|.+.|+++....+. +..++..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL----QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMAL 139 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 34477889999999999999999999993 34667899999999999999999999999999998765 78899999
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCCCCCHhhH----------HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY----------ITVLAILVEENQLKLAFRFYRHMREIGIQ-PCVASLNV 160 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 160 (485)
...|...|++++|+..|+++.+.. +.+...+ ..+...+...|++++|.+.++++.+.... ++...+..
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 999999999999999999998753 2222233 34578889999999999999999987521 15778888
Q ss_pred HHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 011463 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240 (485)
Q Consensus 161 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 240 (485)
+...+... |++++|...++++.+... .+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|
T Consensus 219 l~~~~~~~-g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 219 LGVLFHLS-GEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 88888888 999999999999998743 378899999999999999999999999998863 335788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCC-----------CCHhhHHHHHHHHHcCCChHHHHHHHHH
Q 011463 241 SVEEAMRLFEEMRSKGVE-----------PNVFTYSSLMDGLCKGGCSSQAMELLQM 286 (485)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (485)
++++|...|+++.+.... .+...|..+..++...|+.+.+......
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998764211 0245566666667777776666655443
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2e-17 Score=155.33 Aligned_cols=351 Identities=9% Similarity=-0.094 Sum_probs=226.1
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhc--------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEF--------GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG----- 150 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 150 (485)
....|+.+...+...|++++|++.|++..+. .-+....+|..+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567899999999999999999999887542 112345678899999999999999999999876531
Q ss_pred -CCC-CHHHHHHHHHHHHhc-CCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH---HHHcCCHhHHHHHHHHHHHCCCCC
Q 011463 151 -IQP-CVASLNVLIKALCKN-SGTMDAAFKIFREMPNRGCTPDSYTYGTLING---LCRLGKIYEAKELFKEMETKACSP 224 (485)
Q Consensus 151 -~~~-~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 224 (485)
..+ ...++.....++... .+++++|...|++..+..+. ++..+..+..+ +...++.++|++.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 111 233444433333322 25789999999998887433 55566555554 345577788888888887653 22
Q ss_pred ChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHH
Q 011463 225 TVVTYTSLINGLCQ----SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300 (485)
Q Consensus 225 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (485)
+...+..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...++++.+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45555555544443 456778888888887764 446777888888899999999999999998876433 566666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccccchhhhHHHH
Q 011463 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIRIHNTV 379 (485)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 379 (485)
.+..+|...+... .... ...........+.++.|...+++..+.. |+ ...+. .+
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~-------~l 340 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCS-------IL 340 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHH-------HH
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC--Cchhhhhh-------hH
Confidence 6665553321111 1100 0001111112334678999999888743 33 33333 66
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhCCCccchh--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 380 VQGLCKT-DPNRAFQVYLSMRNRSISVDSL--TYSSLIT-CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455 (485)
Q Consensus 380 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 455 (485)
...+... ++++|...|++..+..+.+... .+..+.. .....|++++|+..|++..+. .|+......
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~-------- 410 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK-------- 410 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH--------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH--------
Confidence 6777777 9999999999999876554322 2333332 345789999999999999985 565433322
Q ss_pred CcHHHHHHHHHHHHHcCCC
Q 011463 456 RKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~ 474 (485)
....+.+++++.++.++.
T Consensus 411 -~~~~l~~~~~~~l~~~p~ 428 (472)
T 4g1t_A 411 -MKDKLQKIAKMRLSKNGA 428 (472)
T ss_dssp -HHHHHHHHHHHHHHHCC-
T ss_pred -HHHHHHHHHHHHHHhCCC
Confidence 233445556666665543
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1.9e-18 Score=153.91 Aligned_cols=232 Identities=9% Similarity=-0.013 Sum_probs=126.2
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
...+..++..+...|++++|..+|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344566666677777777777777777666544 56666677777777777777777777776653 3456666777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--------------HH--HHhcCCChHHHHHHHHhhhhCCCCCCHHh
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLI--------------KA--LCKNSGTMDAAFKIFREMPNRGCTPDSYT 193 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--------------~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (485)
+...|++++|.+.++++.+.. |+.......+ .. +... |++++|...++++.+.... +...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP-NEYRECRTLLHAALEMNPN-DAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSH-HHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc-ccHHHHHHHHHHHHhhCCC-CHHH
Confidence 777777777777777776643 3222111111 11 2233 5555555555555544322 4455
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (485)
+..+..++...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 5555555555555555555555554432 1233444444455555555555555555544432 2233444444444444
Q ss_pred CCChHHHHHHHHHHHh
Q 011463 274 GGCSSQAMELLQMMIS 289 (485)
Q Consensus 274 ~~~~~~a~~~~~~~~~ 289 (485)
.|++++|...++++..
T Consensus 253 ~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIY 268 (327)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.9e-18 Score=153.05 Aligned_cols=288 Identities=13% Similarity=0.143 Sum_probs=138.5
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
.++.+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. ++...|..++..+...|
T Consensus 11 ~ll~~~~~ld~A~~fae~~~---------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERCN---------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 44567889999999999876 2358999999999999999999999753 36678999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 011463 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179 (485)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 179 (485)
++++|+..++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..++..+...|... |.+++|..+|
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~-g~yeeA~~~Y 145 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDE-KMYDAAKLLY 145 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC-----------------CTTTHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 999999988877764 4567889999999999999999998885 37778999999999998 9999999999
Q ss_pred HhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011463 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 259 (485)
..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~ 205 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VV 205 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TT
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----Hh
Confidence 977 37999999999999999999999998 27889999999999999999996655442 23
Q ss_pred CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhH-CCCCC------CHH
Q 011463 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL-QGLKP------DAG 332 (485)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~ 332 (485)
.+.....++..|.+.|.+++|..+++..+... +.....|+-+..+|++- ++++..+.++.... .+++| +..
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44445678899999999999999999998775 44677788887777764 45555555544332 23333 456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 011463 333 LYGKIISCFCDIGKYQEAANFL 354 (485)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~ 354 (485)
.|..+...|...++++.|....
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHH
Confidence 7899999999999999887743
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=5.1e-18 Score=151.17 Aligned_cols=267 Identities=8% Similarity=-0.070 Sum_probs=219.9
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
....+...+..+...|++++|+.+|+.+.. ..+.+..++..++..+...|++++|.+.++++....+. +...+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ----AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAA 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHH
Confidence 445566788899999999999999999983 33567889999999999999999999999999998765 7889999
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV--------------LA-ILVEENQLKLAFRFYRHMREIGIQPCV 155 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (485)
+...+...|++++|+..++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+.
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 172 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDA 172 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCH
Confidence 9999999999999999999998864 3334444443 22 3777899999999999999865 3356
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011463 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235 (485)
Q Consensus 156 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 235 (485)
..+..+...+... |++++|...++++.+... .+..++..+..++...|++++|...|+++.+.. +.+...+..+..+
T Consensus 173 ~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 173 QLHASLGVLYNLS-NNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 7777788888887 999999999999988743 368889999999999999999999999998763 3467889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHcCCChHHHHHHHHHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGVEP-----------NVFTYSSLMDGLCKGGCSSQAMELLQMM 287 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 287 (485)
+...|++++|...++++.+..... +...+..+..++.+.|++++|..+++..
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999988753221 4667788888888889988888887654
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=1.7e-15 Score=149.96 Aligned_cols=397 Identities=12% Similarity=0.141 Sum_probs=225.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
.+...+.|...|++.+|+++++++.-+ ...+..+...-+.++.+.++. +..+..++.++.... + ...+...
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 345678889999999999999999932 111223444444455444433 233333333333211 0 1223333
Q ss_pred HhccCChhhHHHHHHHHHhcC---------------------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011463 95 YGRVHRPLDAMRVFDKMKEFG---------------------CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (485)
+...|.+++|..+|++..... -.-++.+|..+..++...|++++|...|.+. -
T Consensus 1059 ai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 334444444444444321000 0023555666666666666666666666442 2
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 011463 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233 (485)
Q Consensus 154 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 233 (485)
+...|..+...+.+. |++++|.++|....+.. +++...+.++.+|++.+++++...+. + .++...+..+.
T Consensus 1133 D~say~eVa~~~~~l-GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 444555555555555 66666666666555442 22222334566666666655433221 1 23444555566
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011463 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313 (485)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (485)
..|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 6666666666666666653 24666666666666666666666655 14566666666666666666
Q ss_pred HHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHH
Q 011463 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ 393 (485)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 393 (485)
.|......+ ..++..+..++..|.+.|.+++|+.+++..+... +.. +.++.-+...+.+..+++-.+
T Consensus 1268 LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH------~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1268 LAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE--RAH------MGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhH------hHHHHHHHHHHHhCCHHHHHH
Confidence 666654432 3356677788999999999999999998876532 221 223335666666666655555
Q ss_pred HHHHHHhCC-Ccc------chhhHHHHHHHHHhcCCHHHHHHH-------------HHHHHhCCCCCChhhHHHHHHHHH
Q 011463 394 VYLSMRNRS-ISV------DSLTYSSLITCFCKKGDIHKSARI-------------VDELVLDGCLPDEGTWSAVMTALW 453 (485)
Q Consensus 394 ~~~~~~~~~-~~~------~~~~~~~l~~~~~~~g~~~~a~~~-------------~~~~~~~~~~p~~~~~~~l~~~~~ 453 (485)
.++....+. +++ +...|..+...|.+.|+++.|... |+..+.. ..+...|...+..|.
T Consensus 1335 hlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1335 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHH
Confidence 544443321 111 567799999999999999999832 2222222 345556666666666
Q ss_pred hcC---------------cHHHHHHHHH
Q 011463 454 DRR---------------KMRQAAELLL 466 (485)
Q Consensus 454 ~~g---------------~~~~A~~~~~ 466 (485)
..+ +++.+++++.
T Consensus 1413 ~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1413 EFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 555 6666666665
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.9e-17 Score=143.79 Aligned_cols=249 Identities=13% Similarity=0.081 Sum_probs=107.8
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
-....|+++.|+..++.+. ...|+ ......+.++|...|+++.|+..++.. ..|+..++..+...+...
T Consensus 8 ~~~~~g~y~~ai~~~~~~~-----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVK-----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSC-----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC
Confidence 3344555555555555444 11121 123344455555555555555444321 122344444455555555
Q ss_pred CChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
|+.++|++.++++...+. |.+...+..+..++...|++++|.+.+++ +.+...+..+...+.+. |++++|.+
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~-g~~~~A~~ 151 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL-DRLDLARK 151 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC-CCHHHHHH
Confidence 555555555555544332 22333444444555555555555555544 23334444444444444 55555555
Q ss_pred HHHhhhhCCCCCCHH-h--HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 178 IFREMPNRGCTPDSY-T--YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
.++.+.+.. |+.. . ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.+
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555544432 1111 0 011112222234444444444444443 222344444444444444444444444444444
Q ss_pred CCCCCCHhhHHHHHHHHHcCCChHH-HHHHHHHHHh
Q 011463 255 KGVEPNVFTYSSLMDGLCKGGCSSQ-AMELLQMMIS 289 (485)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 289 (485)
.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 229 ~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 229 KD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 32 2233444444444444444432 2344444443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=6.7e-17 Score=140.36 Aligned_cols=254 Identities=13% Similarity=0.107 Sum_probs=153.5
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
++.....|++..|+..++......+.........+.++|...|+++.|+..++.. -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 4555667777777777776655433222334455667777777777777655431 245566666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHH
Q 011463 137 KLAFRFYRHMREIGIQPCVASLNV-LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215 (485)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (485)
++|.+.++++...+..|+...+.. +...+... |++++|++.+++ +.+...+..++.++.+.|++++|.+.|+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777776554454433333 33444444 777777777766 2366677777777777777777777777
Q ss_pred HHHHCCCCCChhhH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 011463 216 EMETKACSPTVVTY---TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292 (485)
Q Consensus 216 ~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (485)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++++..+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 776652 332211 112233334466666776666666652 44566666666666666666666666666666533
Q ss_pred CCChhhHHHHHHHHHhcCCHHH-HHHHHHHHhHC
Q 011463 293 RPNIVTYSTLLNGLCKEGKLQE-AVEILDRMKLQ 325 (485)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 325 (485)
. ++.++..++..+...|+.++ +..+++++.+.
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2 55566666666666666644 45566666554
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.2e-17 Score=148.07 Aligned_cols=239 Identities=13% Similarity=0.124 Sum_probs=75.4
Q ss_pred hcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 011463 62 SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (485)
+.|++++|.+.++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 556677777777766 23346777777777777777777777542 455567777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 011463 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221 (485)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (485)
+++..++. .++..+...++.++.+. |+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKT-NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 66655553 24455566666666666 77776665553 245556777777777777777777777655
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHH
Q 011463 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301 (485)
Q Consensus 222 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (485)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 24666666666777777766666665 15666666666666666666664433321 123333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh
Q 011463 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343 (485)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (485)
++..|.+.|.+++|..+++...... +.....|+.+..+|++
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 5566666666666666666665443 3344555555555544
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1.7e-14 Score=143.05 Aligned_cols=357 Identities=16% Similarity=0.242 Sum_probs=261.0
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT 125 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 125 (485)
.++.-....+++|...|.+.+|+++++++...+. .-+....+.++....+. +..+..+...++... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 3555567788999999999999999999985422 12446666677766666 556666666665422 1 334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
+...+...|.+++|..+|++.. -.....+.++. .. +++++|.++.++.. +..+|..+..++...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i-~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HI-GNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HH-hhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 7788889999999999999863 12223344443 33 89999999998762 5788999999999999
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHH
Q 011463 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285 (485)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (485)
++++|++.|.+. .|...|..++.++.+.|++++|.+.+...++.. +++...+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999764 377889999999999999999999999888764 33333445888999999888644442
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011463 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 365 (485)
. .++...+..+...|...|++++|...|... ..|..++.++.+.|++++|.+.+++.. +
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 2 235667778999999999999999999884 479999999999999999999998872 3
Q ss_pred cccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 011463 366 RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444 (485)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 444 (485)
..+|. .+..+|... ++..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....
T Consensus 1250 ~~aWk-------ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1250 TRTWK-------EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred HHHHH-------HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 34554 555566555 66666665443 22256677788888999999999999998887543 223335
Q ss_pred HHHHHHHHH--hcCcHHHHHHHHHHHHH
Q 011463 445 WSAVMTALW--DRRKMRQAAELLLLELM 470 (485)
Q Consensus 445 ~~~l~~~~~--~~g~~~~A~~~~~~~~~ 470 (485)
|..+...+. +-++..++.++|..-++
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 544544444 44566666666654443
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.74 E-value=3.4e-15 Score=138.34 Aligned_cols=311 Identities=13% Similarity=0.030 Sum_probs=150.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCc---chHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF---RPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
..+...+.+.|++++|++.|+++. ..+ ++.++..+...|...|+. ++|.++|++..+. ++..+..+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa---~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg 76 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLA---ELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLG 76 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHT---CCTGGGTCC--------------------------------CHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH---HCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHH
Confidence 456777788888888888888877 233 344555666667777777 7888888877754 445566666
Q ss_pred HHHhccC-----ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011463 93 RGYGRVH-----RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL---KLAFRFYRHMREIGIQPCVASLNVLIKA 164 (485)
Q Consensus 93 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 164 (485)
..+...+ ++++|+..|++..+.| +...+..+...|...+.. .++.+.+......|. ......+...
T Consensus 77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~ 150 (452)
T 3e4b_A 77 RLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLL 150 (452)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHH
T ss_pred HHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHH
Confidence 6444444 6677888888777755 233666666666654432 234444444444442 2223333333
Q ss_pred HHhcCCChHH----HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC---CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011463 165 LCKNSGTMDA----AFKIFREMPNRGCTPDSYTYGTLINGLCRLG---KIYEAKELFKEMETKACSPTVVTYTSLINGLC 237 (485)
Q Consensus 165 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 237 (485)
+... +.++. +..+++..... ++..+..|...|...| +.++|++.|++..+.+. ++...+..+...|.
T Consensus 151 y~~~-~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 151 YRTQ-GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLG 224 (452)
T ss_dssp HHHH-TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHT
T ss_pred HHcC-CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 3333 43333 33333333222 2235566666666666 66666666666665542 23333344555554
Q ss_pred cc----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011463 238 QS----KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG-L--CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310 (485)
Q Consensus 238 ~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (485)
.. +++++|...|+... .| ++..+..+... + ...+++++|.++|++..+.| ++..+..+...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred CCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 43 46666666666655 22 33444444444 2 34556666666666665544 4444555555554 33
Q ss_pred -----CHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 011463 311 -----KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD----IGKYQEAANFLDEMVLG 360 (485)
Q Consensus 311 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 360 (485)
++++|...|++.. . -+...+..+...|.. ..++++|..+|++..+.
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 5666666665554 2 244444445544443 22555555555555443
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=8.1e-16 Score=142.51 Aligned_cols=379 Identities=12% Similarity=0.068 Sum_probs=254.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh---hhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 55 LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP---LDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 55 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.+...+.+.|++++|.++|++..+.+ +...+..+...|...|+. ++|+.+|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35777889999999999999998875 445566677777778888 9999999999863 6667777777555
Q ss_pred HcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh---HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 132 EEN-----QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM---DAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 132 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
..+ ++++|...|++..+.|.. + .+..+...+... +.. ..+.+.+....+.| +......|...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~-~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQY-PHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHC-GGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 555 788999999999997732 2 444444444443 332 44566666665554 45567778888888
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC----CC
Q 011463 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK---SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG----GC 276 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 276 (485)
.+.++++......+.+.-...+...+..+...|...| +.++|+..|+...+.| +++...+..+...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 8866665555433333222234558888999999999 9999999999999987 45666556677777654 79
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcC-----CHH
Q 011463 277 SSQAMELLQMMISKRHRPNIVTYSTLLNG-L--CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG-----KYQ 348 (485)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 348 (485)
+++|..+|++.. . -++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 3 366677777776 4 56899999999999999876 6778888888887 55 999
Q ss_pred HHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhc----C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh----
Q 011463 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK---- 419 (485)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 419 (485)
+|..+|++.. .|. ..... .+...|.. . ++++|..+|++..+.| +......|...|..
T Consensus 305 ~A~~~~~~Aa-~g~---~~A~~-------~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 305 AAEAHFEKAV-GRE---VAADY-------YLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp HHHHHHHTTT-TTC---HHHHH-------HHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTB
T ss_pred HHHHHHHHHh-CCC---HHHHH-------HHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCC
Confidence 9999999987 432 22222 34444443 3 9999999999999876 45567777877764
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
..+..+|...|+...+.|. ++.......+......++..+|.+..++..+.
T Consensus 371 ~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4589999999999998873 33333333333334556788888888877665
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=8.8e-16 Score=127.42 Aligned_cols=196 Identities=13% Similarity=0.065 Sum_probs=101.6
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|+++..+..+...+...|++++|...|+++++..|. +...+..+...+.+.|++++|+..|++..+.+ |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 456667777777777777777777777777777655 67777777777777777777777777777654 3456666777
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhH
Q 011463 127 LAILVEE-----------NQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194 (485)
Q Consensus 127 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 194 (485)
..++... |++++|...+++..+.. |+ ...+..+...+... |++++|...|++..+.. .+...+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALL-GERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcc--cchHHH
Confidence 7666665 44444444444444432 22 22333333333333 44444444444444443 244444
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 011463 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 250 (485)
..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|...++
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444444444444444444444444331 1133334444444444444444444443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=8.2e-16 Score=127.61 Aligned_cols=196 Identities=11% Similarity=0.032 Sum_probs=161.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..+...+.+.|++++|+..|++++ ...|.++..+..+..++.+.|++++|...++++.+..|. +...+..+..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERAL----KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH----TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 45667888999999999999999999 455778999999999999999999999999999999876 7889999999
Q ss_pred HHhcc-----------CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 94 GYGRV-----------HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 94 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
++... |++++|+..|++..+.. |.+...+..+..++...|++++|...|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 99999 99999999999999875 4568889999999999999999999999999987 6778888888
Q ss_pred HHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
..+... |++++|...+++..+..+. +...+..+..++...|++++|...|++...
T Consensus 159 ~~~~~~-g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSM-GRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 888888 9999999999999987533 788899999999999999999999988654
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.5e-15 Score=128.66 Aligned_cols=226 Identities=15% Similarity=0.044 Sum_probs=143.5
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCC--CC----HhhH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE--PT----PKSY 123 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 123 (485)
...+..++..+...|++++|.+.|+++.... .+...+..+...+...|++++|+..+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777776665 46666777777777777777777777776654210 11 4566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
..+..++...|++++|...++++.+.. |+.. .+... |++++|...++.+..... .+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------ILTKL-RNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------HHHHH-HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------HHHHH-hHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHH
Confidence 677777777777777777777776643 4422 23333 666777777777666521 245566666677777
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHH
Q 011463 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (485)
.|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..++.+.|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777777777777766543 2245566666666667777777777776666553 33455566666666666666666666
Q ss_pred HHHHHhC
Q 011463 284 LQMMISK 290 (485)
Q Consensus 284 ~~~~~~~ 290 (485)
++.+.+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
No 40
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.71 E-value=4.8e-13 Score=128.05 Aligned_cols=441 Identities=8% Similarity=0.016 Sum_probs=301.9
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC---hhh
Q 011463 27 DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR---PLD 103 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~ 103 (485)
...+.+..|+..+ ...|.|...|..++..+.+.+.++.+..+|+++...-|. ....|...+..-.+.|+ ++.
T Consensus 47 ~~~d~i~~lE~~l----~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 47 DESDVIGKLNDMI----EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-MANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp CCSCHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC--CCCHHH
T ss_pred CCHHHHHHHHHHH----HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhhCCcchHHH
Confidence 3455666777777 234779999999999999999999999999999998665 78899999999888898 999
Q ss_pred HHHHHHHHHhcC-CCCCHhhHHHHHHHHHHcCCH--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHhc---
Q 011463 104 AMRVFDKMKEFG-CEPTPKSYITVLAILVEENQL--------KLAFRFYRHMRE-IGI-QPC-VASLNVLIKALCKN--- 168 (485)
Q Consensus 104 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~ll~~~~~~--- 168 (485)
+..+|++..... .+|++..|...+....+.++. +...++|+..+. .|. .++ ...|...+......
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 999999998863 138889999888877665543 344577877664 355 454 45677776654321
Q ss_pred -----CCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH-------------cCCHhHHHHHHHHHHHC--CC----C-
Q 011463 169 -----SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR-------------LGKIYEAKELFKEMETK--AC----S- 223 (485)
Q Consensus 169 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~- 223 (485)
.++++.+.++|++++......-..+|......-.. ..++..|...+.++... ++ +
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 14567888999998864222122334322211111 11234444555543221 11 1
Q ss_pred ----------C--C------hhhHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChH
Q 011463 224 ----------P--T------VVTYTSLINGLCQSK-------SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278 (485)
Q Consensus 224 ----------~--~------~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (485)
| + ...|...+.---..+ ..+.+..+|++.... .+-....|-..+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 1 0 122333333222221 134456778888765 3457788888888888889999
Q ss_pred HHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCC---------CCC------------HHhHHH
Q 011463 279 QAM-ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL---------KPD------------AGLYGK 336 (485)
Q Consensus 279 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~ 336 (485)
+|. .+|++.... .+.+...+-..+....+.|+++.|..+|+++..... .|+ ..+|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 997 999999875 344666677788888899999999999999876310 131 236777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITC 416 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 416 (485)
.+....+.|+.+.|..+|.++.+.. |. .++.. -+..+.+......+++.|.++|+...+.-+. +...|...+..
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~--~~-~~~~l--yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~f 513 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLK--KL-VTPDI--YLENAYIEYHISKDTKTACKVLELGLKYFAT-DGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTG--GG-SCTHH--HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc--CC-CChHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 8888888999999999999998751 11 11210 0111222222222689999999999886333 66778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchhc
Q 011463 417 FCKKGDIHKSARIVDELVLDGCLP--DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 480 (485)
....|+.+.|..+|++.+.....+ ....|..++..-.+.|+.+.+.++.+++.+..+.++.+.+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 888999999999999999863211 3456777887778899999999999999998877766654
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=3.5e-16 Score=135.53 Aligned_cols=253 Identities=11% Similarity=-0.040 Sum_probs=174.2
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
.+...|++++|+..|+.+........+.+..++..++..+...|++++|.+.|+++....+. +...+..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccC
Confidence 45667999999999999993100011234678889999999999999999999999998765 78899999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 180 (485)
+++|+..|++..+.. +.+..++..+..++...|++++|...++++.+.. |+.......+..+... |++++|...++
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~-~~~~~A~~~~~ 168 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQK-LDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-HCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 999999999998864 4467888899999999999999999999998854 5555444455555555 88888888887
Q ss_pred hhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011463 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS---PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257 (485)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 257 (485)
....... ++...+ .++..+...++.++|...+.+....... .+...+..+..++...|++++|...|++..+..
T Consensus 169 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 245 (275)
T 1xnf_A 169 QHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN- 245 (275)
T ss_dssp HHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 7766532 233333 3566666777777777777776543211 013455566666666666666666666666542
Q ss_pred CCCHhhHHHHHHHHHcCCChHHHHHHH
Q 011463 258 EPNVFTYSSLMDGLCKGGCSSQAMELL 284 (485)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (485)
|+. +.....++...|++++|++.+
T Consensus 246 -p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CTT--CHHHHHHHHHHHHHHHC----
T ss_pred -chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 211 112233444455555554443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=8e-15 Score=131.54 Aligned_cols=216 Identities=7% Similarity=-0.015 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-hhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR-PLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
.+|..+..++...|++++|++.+++++..++. +..+|..+..++...|+ +++|+..|+++.+.+ +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 34444444444444455555555444444433 44444444444444443 445555444444432 2234444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH-cCCHh
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR-LGKIY 208 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 208 (485)
+...|++++|+..|+++++.. +-+...|..+...+... |++++|+..++++++.... +...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 444444555555544444432 11233333333333333 4445555555444444322 44444444444444 33324
Q ss_pred HH-----HHHHHHHHHCCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011463 209 EA-----KELFKEMETKACSPTVVTYTSLINGLCQSK--SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274 (485)
Q Consensus 209 ~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (485)
+| +..|++..... +-+...|..+..++...| ++++|+..+..+ +. .+.+...+..+..+|.+.
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 44 24444444331 113344444444444444 344444444444 22 122334444444444443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=8.3e-15 Score=126.60 Aligned_cols=232 Identities=8% Similarity=-0.020 Sum_probs=149.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICR 93 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 93 (485)
...+..+...|++++|+..|+.++. ..|.+...+..++..+...|++++|.+.++++......+ ....+..+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEA----KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH----TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3456677778888888888887772 234455677777777888888888888888777732111 2234677777
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
.+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+...+... ++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN-KEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-HHHH
Confidence 7777788888888887777654 3456677777777777777777777777776643 22333343333144444 6777
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC---HhHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHHccCCHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK---IYEAKELFKEMETKA-CSPT------VVTYTSLINGLCQSKSVE 243 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~ll~~~~~~~~~~ 243 (485)
+|.+.++++.+.... +...+..+..++...|+ +++|...|++..+.. ..|+ ...+..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 777777777765322 45666666777776676 666777776665431 1122 134555666666666666
Q ss_pred HHHHHHHHHHhC
Q 011463 244 EAMRLFEEMRSK 255 (485)
Q Consensus 244 ~a~~~~~~~~~~ 255 (485)
+|...+++..+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666666654
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.2e-14 Score=124.37 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCC--CC----HHhHH
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT--PD----SYTYG 195 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 195 (485)
.+..+...+...|++++|...|+++.+.. .+...+..+...+... |++++|...++++.+.... ++ ..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 34444444444455555555554444443 3344444444444444 5555555555444433111 01 35556
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC
Q 011463 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275 (485)
Q Consensus 196 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 275 (485)
.+..++...|++++|...|++.... .|+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666666666553 2221 33445566677777777766652 234555666777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 355 (485)
++++|...++.+.+.... +..++..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777777765332 56677777777777777777777777777653 4456677777777888888888888777
Q ss_pred HHHH
Q 011463 356 EMVL 359 (485)
Q Consensus 356 ~~~~ 359 (485)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 45
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=152.82 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHH---hcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMK---EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
.+|+.+|.+|++.|++++|.++|++|. ..|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 579999999999999999999998875 45789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC-hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC------hhhHHHHHHH
Q 011463 163 KALCKNSGT-MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT------VVTYTSLING 235 (485)
Q Consensus 163 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~ 235 (485)
..+++. |+ .+.|.++|++|.+.|+.||..+|+.++..+.+. .+++..+++ ..+..|+ ..+...|.+.
T Consensus 208 ~glcK~-G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 208 QCMGRQ-DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHH-TCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999998 77 478999999999999999999999988765543 334444444 2233333 4455566677
Q ss_pred HHccC---------CHHHHHHHHHH
Q 011463 236 LCQSK---------SVEEAMRLFEE 251 (485)
Q Consensus 236 ~~~~~---------~~~~a~~~~~~ 251 (485)
|.+.+ ..++-...|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 77655 24555555554
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.2e-14 Score=125.64 Aligned_cols=234 Identities=10% Similarity=0.037 Sum_probs=142.5
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCH----hhHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP----KSYIT 125 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 125 (485)
+..+...+..+...|++++|...++++.+..+. +...+..+...+...|++++|+..+++..+.. ++. .+|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHH
Confidence 344566677777888888888888887777654 55577777777778888888888888777632 222 23677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
+..++...|++++|.+.|++..+.. +.+...+..+...+... |++++|...+++..+.. +.+...+..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT-TCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 7777777777777777777777654 22345555666666665 77777777777776653 225556666663333445
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC---HHHHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHcCC
Q 011463 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS---VEEAMRLFEEMRSKG-VEPN------VFTYSSLMDGLCKGG 275 (485)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~ 275 (485)
++++|.+.|++..+.. +.+...+..+..++...++ +++|...+++..+.. ..|+ ..++..+...|...|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 7777777777766542 2234455555555555555 555555555554321 0112 134444555555555
Q ss_pred ChHHHHHHHHHHHhC
Q 011463 276 CSSQAMELLQMMISK 290 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~ 290 (485)
++++|.+.++++.+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 555555555555554
No 47
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=155.82 Aligned_cols=113 Identities=13% Similarity=0.211 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhhhh---CCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHH
Q 011463 156 ASLNVLIKALCKNSGTMDAAFKIFREMPN---RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232 (485)
Q Consensus 156 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (485)
.+|+++|..|++. |++++|.++|++|.+ .|..||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 128 ~TynaLIdglcK~-G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLT-DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3455555555555 555555555544332 244555555555555555555555555555555555555555555555
Q ss_pred HHHHHccCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011463 233 INGLCQSKS-VEEAMRLFEEMRSKGVEPNVFTYSSLMD 269 (485)
Q Consensus 233 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 269 (485)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 555555554 2445555555555555555555554443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=1.7e-14 Score=129.35 Aligned_cols=251 Identities=9% Similarity=0.004 Sum_probs=175.7
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ-LKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
+..+|..+..++.+.|++++|+..|+++++.+ +.+..+|..+..++...|+ +++|+..|+++++.. +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567777777788888888888888887764 4457778888888888886 888888888888755 22455666666
Q ss_pred HHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCC
Q 011463 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ-SKS 241 (485)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~ 241 (485)
..+... |++++|+..|+++++.... +...|..+..++...|++++|+..|+++++... .+...|+.+..++.. .|.
T Consensus 174 ~~~~~~-g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWL-RDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHH-TCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHc-cCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 666666 8888888888888876543 677888888888888888888888888877643 266777777777777 555
Q ss_pred HHHH-----HHHHHHHHhCCCCCCHhhHHHHHHHHHcCC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----
Q 011463 242 VEEA-----MRLFEEMRSKGVEPNVFTYSSLMDGLCKGG--CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG---- 310 (485)
Q Consensus 242 ~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 310 (485)
.++| +..+++..+.. +-+...|..+..++...| ++++|.+.+..+ +. .+.+...+..+..+|...|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 4666 47777777653 335667777777777777 577888877776 33 2335667777777777653
Q ss_pred -----CHHHHHHHHHHH-hHCCCCCCHHhHHHHHHHHHh
Q 011463 311 -----KLQEAVEILDRM-KLQGLKPDAGLYGKIISCFCD 343 (485)
Q Consensus 311 -----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 343 (485)
..++|..+++++ .+.. +.....|..+...+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 247788888887 5542 3344556666555543
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=2.6e-13 Score=117.22 Aligned_cols=224 Identities=11% Similarity=0.026 Sum_probs=140.3
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR----VHRPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
.++.++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +..++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35566666667777777777777777776662 245566666666666 777777777777776653 56666
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHhhhhCCCCCCHHhHH
Q 011463 124 ITVLAILVE----ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK----NSGTMDAAFKIFREMPNRGCTPDSYTYG 195 (485)
Q Consensus 124 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 195 (485)
..+...+.. .+++++|.+.|++..+.+ +...+..+...+.. . +++++|...+++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT-RDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC-CCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc-cCHHHHHHHHHHHHhcC---cHHHHH
Confidence 666666666 677777777777666654 44455555555555 4 66677777776666654 445555
Q ss_pred HHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011463 196 TLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ----SKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267 (485)
Q Consensus 196 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (485)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 66666666 666666666666666542 34555556666666 666666666666666553 24445555
Q ss_pred HHHHHc----CCChHHHHHHHHHHHhC
Q 011463 268 MDGLCK----GGCSSQAMELLQMMISK 290 (485)
Q Consensus 268 ~~~~~~----~~~~~~a~~~~~~~~~~ 290 (485)
...|.. .+++++|.+.+++..+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 556665 66666666666666554
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=7.9e-15 Score=126.93 Aligned_cols=244 Identities=11% Similarity=-0.062 Sum_probs=127.4
Q ss_pred CCHhHHHHHHHHHHHCCC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHH
Q 011463 205 GKIYEAKELFKEMETKAC---SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 281 (485)
|++++|+..|+++.+... +.+...+..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 344444444444443311 1123334444444445555555555555544432 223444555555555555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011463 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (485)
..++++.+..+. +..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 555555544221 34455555555555555555555555555432 222222223333344566666666665555432
Q ss_pred CCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCcc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011463 362 ITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV---DSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437 (485)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 437 (485)
|+..... .+...+... +.++|...+++.....+.. +...+..+..+|...|++++|...|+++.+.
T Consensus 175 --~~~~~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 244 (275)
T 1xnf_A 175 --DKEQWGW-------NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN- 244 (275)
T ss_dssp --CCCSTHH-------HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred --CcchHHH-------HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 2211111 233333333 5566666666655442211 2577888999999999999999999999976
Q ss_pred CCCChhhHHHHHHHHHhcCcHHHHHHHH
Q 011463 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465 (485)
Q Consensus 438 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 465 (485)
.|+. +.....++...|++++|++.+
T Consensus 245 -~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 -NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred -Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 4533 333455778889999998876
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=1.1e-14 Score=123.38 Aligned_cols=194 Identities=16% Similarity=0.135 Sum_probs=90.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.++..+...|++++|+..|+++. ...+.+...+..++..+...|++++|.+.++++....+. +...+..+...+.
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAI----EENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp --------------CCTTHHHHH----TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHH----HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 34444555555555555555555 222334555555555555555555555555555554433 4455555555555
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+... |++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE-GMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc-CCHHHHH
Confidence 5555555555555555442 2344455555555555555555555555555432 12333444444444444 5555555
Q ss_pred HHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
..++.+.+... .+..++..+..++...|++++|.+.++++.+
T Consensus 180 ~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555544321 1344455555555555555555555555544
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.4e-13 Score=117.37 Aligned_cols=201 Identities=8% Similarity=-0.012 Sum_probs=102.6
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
+..+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 344555556666666666666666666555433 45555556666666666666666666655543 2344555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
+...|++++|.+.++++.+.+..|+ ...+..+...+... |++++|...++++.+.... +...+..+..++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555554212232 22333333344443 5555555555555444211 3444555555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+|...++++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555555544431 123334444444455555555555555555443
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=6.3e-13 Score=114.77 Aligned_cols=224 Identities=10% Similarity=0.017 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKLAFRFYRHMREIGIQPCVASLN 159 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (485)
+..++..+...+...|++++|+..|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555555555555555555555542 234445555555555 555555555555555443 333344
Q ss_pred HHHHHHHh----cCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHH
Q 011463 160 VLIKALCK----NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTS 231 (485)
Q Consensus 160 ~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 231 (485)
.+...+.. . +++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++
T Consensus 79 ~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~--------------- 139 (273)
T 1ouv_A 79 LLGNLYYSGQGVS-QNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTK--------------- 139 (273)
T ss_dssp HHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH---------------
T ss_pred HHHHHHhCCCCcc-cCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHH---------------
Confidence 44444433 3 55555555555544432 34444444444444 4445555544444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011463 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK----GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307 (485)
Q Consensus 232 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (485)
..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.
T Consensus 140 --------------------a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 140 --------------------ACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp --------------------HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred --------------------HHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 44432 23334444444444 455555555555554442 3344444555555
Q ss_pred h----cCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011463 308 K----EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD----IGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 308 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 361 (485)
. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5 555555555555555543 24444455555555 555555555555555543
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=9.9e-14 Score=115.96 Aligned_cols=205 Identities=10% Similarity=0.016 Sum_probs=135.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
+.++..+..++..+...|++++|.+.++.+....+. +...+..+...+...|++++|.+.++++.+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 345666777777777777777887777777776544 56677777777777777777777777777653 3456677777
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc
Q 011463 127 LAILVEE-NQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204 (485)
Q Consensus 127 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (485)
...+... |++++|...++++.+.+..|+ ...+..+...+... |++++|...++++.+.... +...+..+..++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHc
Confidence 7777777 777777777777776222233 34445555555555 7777777777776665322 466666677777777
Q ss_pred CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
|++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777665422134555555666666667777777776666543
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1e-13 Score=118.19 Aligned_cols=200 Identities=8% Similarity=-0.040 Sum_probs=172.1
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
..+..++..+...|++++|++.|+++.. ..+.+..++..++..+...|++++|.+.++++....+. +...+..+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 112 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALE----IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHH
Confidence 3455677888999999999999999983 23567889999999999999999999999999988765 788999999
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
..+...|++++|.+.++++.+.+..| +...+..+..++...|++++|.+.++++.+.. +.+...+..+...+... |+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-g~ 190 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE-RE 190 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-CC
Confidence 99999999999999999998732234 56788889999999999999999999998865 23466777777888887 99
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
+++|...++.+.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999988643 47788889999999999999999999999876
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=3.4e-14 Score=120.44 Aligned_cols=201 Identities=12% Similarity=0.097 Sum_probs=125.6
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
.+..|..++..+...|++++|...|+++....+. +...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4456777777888888888888888888876554 67777778888888888888888888877764 446677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
.+...|++++|.+.++++.+.. +.+...+..+...+... |++++|...++++.+... .+...+..+..++...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL-EQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 7888888888888888777654 23455555566666665 777777777777766532 25666666777777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+|...|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777766542 224555666666666666666666666666654
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=2.7e-13 Score=113.24 Aligned_cols=200 Identities=14% Similarity=0.045 Sum_probs=170.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..++..+...|++++|++.|+.+.. ..+.+...+..++..+...|++++|.+.++++....+. +...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALK----SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 345678889999999999999999983 33567889999999999999999999999999988765 7888999999
Q ss_pred HHhcc-CChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 94 GYGRV-HRPLDAMRVFDKMKEFGCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 94 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
.+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+... |+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA-GQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc-CC
Confidence 99999 99999999999998832223 36788899999999999999999999998865 23467777777788887 99
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
+++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999988754247778888888899999999999999998764
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=4.9e-14 Score=129.44 Aligned_cols=297 Identities=14% Similarity=0.076 Sum_probs=177.7
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC----HHHHHHHHHHHhccCChhhHHHHHHHHHhc----CCC-CC
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT----EDIFLSICRGYGRVHRPLDAMRVFDKMKEF----GCE-PT 119 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 119 (485)
....+......+...|++++|...|+++....+. + ..++..+...+...|++++|...+++.... +-+ ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555566666666666666666666665433 2 234555666666666666666666655332 101 12
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCC--------------------hHH
Q 011463 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQ-PC----VASLNVLIKALCKNSGT--------------------MDA 174 (485)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~--------------------~~~ 174 (485)
..++..+...+...|++++|...+++..+.... ++ ...+..+...+... |+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHH
Confidence 344555666666666666666666665542100 01 22444444455554 66 667
Q ss_pred HHHHHHhhhhC----CC-CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHccCCHHH
Q 011463 175 AFKIFREMPNR----GC-TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS-PT----VVTYTSLINGLCQSKSVEE 244 (485)
Q Consensus 175 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~ 244 (485)
|...+++..+. +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 76666665432 11 112346777788888888888888888877643111 11 2367777888888888888
Q ss_pred HHHHHHHHHhC----CCCC-CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHH
Q 011463 245 AMRLFEEMRSK----GVEP-NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR-PN----IVTYSTLLNGLCKEGKLQE 314 (485)
Q Consensus 245 a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~ 314 (485)
|...+++..+. +..+ ...++..+...|...|++++|...++........ .+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888877643 1111 1456677788888889999998888887653111 11 4567777888888899999
Q ss_pred HHHHHHHHhHC----CCC-CCHHhHHHHHHHHHhcCCH
Q 011463 315 AVEILDRMKLQ----GLK-PDAGLYGKIISCFCDIGKY 347 (485)
Q Consensus 315 a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 347 (485)
|...+++..+. +.. ....++..+...+...|+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 98888876543 111 1133455556666655544
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=5.1e-14 Score=129.59 Aligned_cols=138 Identities=11% Similarity=0.010 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCC-----ccc
Q 011463 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI-----SVD 406 (485)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~-----~~~ 406 (485)
++..+...+...|++++|...+++..+.. ++.........++..+...+... ++++|...+++...... ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIA--REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55556666666666666666666665421 11111011112333455555555 66666666666554211 112
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 407 SLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLP-DEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 407 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
..++..+...|...|++++|...+++..+. +..+ ...++..+..+|.+.|++++|.++++++++..
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788899999999999999999998764 1111 13466778888999999999999999998754
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=8e-13 Score=116.13 Aligned_cols=218 Identities=11% Similarity=0.104 Sum_probs=155.7
Q ss_pred HHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHh-------cCCc-------chHHHHHHHHhh-cCCCCCHHHHHHHHH
Q 011463 29 NKALVIFDSATAEYANGFRHDNSTFSLMISKLVS-------ANQF-------RPAEDLLDRVNK-EKCDITEDIFLSICR 93 (485)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 93 (485)
++|+.+|++++. ..|.++..|..++..+.. .|++ ++|..+|++++. ..+. +...|..++.
T Consensus 33 ~~a~~~~~~al~----~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLL----VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 788899999983 346778888888887763 5776 889999999888 4544 6778888888
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCC-Hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPT-PK-SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
.+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...+...........|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC
Confidence 888889999999999998875 343 33 78888888888888888888888888754 22333333222221121278
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHccCCHHHHHHH
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSP--TVVTYTSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~ 248 (485)
+++|..+|+...+... .+...|..++..+.+.|++++|..+|++..... .+| ....|..++....+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888887776532 256777777777777788888888888777652 233 345666667777777777777777
Q ss_pred HHHHHhC
Q 011463 249 FEEMRSK 255 (485)
Q Consensus 249 ~~~~~~~ 255 (485)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=2.1e-11 Score=116.81 Aligned_cols=420 Identities=11% Similarity=0.084 Sum_probs=279.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCC---cchHHHHHHHHhhcCC-CCCHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ---FRPAEDLLDRVNKEKC-DITEDIFLS 90 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~~~~ 90 (485)
...+++.+.+.++++.+..+|+.++ ..+|.....|...+..-.+.|+ ++.+.++|++.+...+ .|++..|..
T Consensus 69 W~~yi~~~~~~~~~~~aR~vyEraL----~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 69 YVKLLKHHVSLKQWKQVYETFDKLH----DRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 3455666788899999999999999 4567788899999999899999 9999999999998752 368889988
Q ss_pred HHHHHhccCCh--------hhHHHHHHHHHhc-CC-CC-CHhhHHHHHHHHH---------HcCCHHHHHHHHHHHHHcC
Q 011463 91 ICRGYGRVHRP--------LDAMRVFDKMKEF-GC-EP-TPKSYITVLAILV---------EENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 91 l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~ 150 (485)
.+....+.++. +...++|+..... |. .+ +...|...+.... ..++++.+..+|++++...
T Consensus 145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP 224 (679)
T 4e6h_A 145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP 224 (679)
T ss_dssp HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence 88766555543 3345788876643 55 34 4567888876543 3445788899999988531
Q ss_pred CCCCHHHHHHHHHHHHh-c-----------CCChHHHHHHHHhhhhC--CC----C-----------C-----C---HHh
Q 011463 151 IQPCVASLNVLIKALCK-N-----------SGTMDAAFKIFREMPNR--GC----T-----------P-----D---SYT 193 (485)
Q Consensus 151 ~~~~~~~~~~ll~~~~~-~-----------~~~~~~a~~~~~~~~~~--~~----~-----------~-----~---~~~ 193 (485)
...-..+|......--. . ..+++.|...+.++... ++ + | + ...
T Consensus 225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l 304 (679)
T 4e6h_A 225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI 304 (679)
T ss_dssp CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence 11112222211111000 0 02234444455442211 11 1 1 0 134
Q ss_pred HHHHHHHHHHcC-------CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHhhHH
Q 011463 194 YGTLINGLCRLG-------KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM-RLFEEMRSKGVEPNVFTYS 265 (485)
Q Consensus 194 ~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~ 265 (485)
|...+..--..+ ..+.+..+|++.... .+.....|...+..+...|+.++|. .+++..... ++.+...+-
T Consensus 305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl 382 (679)
T 4e6h_A 305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAF 382 (679)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHH
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHH
Confidence 444444322222 123456678888765 4457778888888888889988996 999999875 345666677
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCC---------CCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 011463 266 SLMDGLCKGGCSSQAMELLQMMISKR---------HRP------------NIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324 (485)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (485)
..+....+.|+++.|.++|+.++... ..| ...+|...+....+.|+.+.|..+|.+..+
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888889999999999999988641 012 123577777777888999999999999987
Q ss_pred CCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCC
Q 011463 325 QGLKPDAGLYGKIISCFCDI-GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402 (485)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~ 402 (485)
.........|...+..-.+. ++.+.|.++|+..++. .|+...+ +...+...... +.+.|..+|++.....
T Consensus 463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~------w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEY------INKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHH------HHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHH------HHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 61122334444433333344 4589999999999885 3443332 12444444444 8999999999999875
Q ss_pred Cc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 403 IS--VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 403 ~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+. -....|...+..-.+.|+.+.+.++.+++.+. .|+......++.
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 52 24567888888888999999999999999987 455444444444
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=7.7e-14 Score=128.39 Aligned_cols=276 Identities=15% Similarity=0.062 Sum_probs=148.3
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH----HHHHHHHHHHhccCChhhHHHHHHHHHhc----C-CCCCHh
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE----DIFLSICRGYGRVHRPLDAMRVFDKMKEF----G-CEPTPK 121 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 121 (485)
..+..+...+...|++++|...|+++....+. +. .++..+...|...|++++|+..+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556677788888888888888888887544 33 46777778888888888888888877553 1 122345
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhcCCC-----------------hHHHHHHH
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIG----IQP-CVASLNVLIKALCKNSGT-----------------MDAAFKIF 179 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~~~~-----------------~~~a~~~~ 179 (485)
++..+...+...|++++|...+++..+.. -.+ ....+..+...+... |+ +++|...+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHH
Confidence 66777777788888888888887766531 011 122344444444444 66 55565555
Q ss_pred HhhhhC----CC-CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 180 REMPNR----GC-TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS-PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 180 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
++..+. +. .....++..+...+...|++++|...+++..+.... .+..
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------- 260 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA-------------------------- 260 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH--------------------------
Confidence 554332 10 011234445555555555555555555554332100 0000
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC---
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR-----PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ--- 325 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 325 (485)
.....+..+...|...|++++|...++++...... ....++..+...+...|++++|...+++....
T Consensus 261 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 261 -----AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp -----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00113344444444455555555544444332100 01234444555555555555555555554332
Q ss_pred -C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 326 -G-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 326 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+ ......++..+..+|...|++++|...+++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 001133555566666666666666666666654
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=2e-13 Score=125.27 Aligned_cols=276 Identities=14% Similarity=0.055 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHhh
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPT----VVTYTSLINGLCQSKSVEEAMRLFEEMRSK----GVEP-NVFT 263 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 263 (485)
.+......+...|++++|...|++..+.... + ...+..+...+...|++++|...+++..+. +..| ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344444455555555555555554443111 1 123444445555555555555555443321 1011 1233
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHR-PN----IVTYSTLLNGLCKEGK--------------------LQEAVEI 318 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 318 (485)
+..+...+...|++++|...++++.+.... ++ ..++..+...+...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 444555555556666655555554432100 01 2345555555666666 6666666
Q ss_pred HHHHhHC----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHH
Q 011463 319 LDRMKLQ----GL-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAF 392 (485)
Q Consensus 319 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~ 392 (485)
+.+.... +. +....++..+...+...|++++|...+++..+.. ++...-.....++..+...+... ++++|.
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 6554321 10 1112355666666777777777777777665421 11110011122333555555555 777777
Q ss_pred HHHHHHHhCCCc-----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCcHHHHH
Q 011463 393 QVYLSMRNRSIS-----VDSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLP-DEGTWSAVMTALWDRRKMRQAA 462 (485)
Q Consensus 393 ~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~ 462 (485)
..+++....... ....++..+...|...|++++|...++++.+. +-.+ ...++..+..++...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777766532111 11456777888888888888888888887653 1111 1345667777888888888888
Q ss_pred HHHHHHHHc
Q 011463 463 ELLLLELMN 471 (485)
Q Consensus 463 ~~~~~~~~~ 471 (485)
++++++++.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=1.5e-13 Score=122.49 Aligned_cols=208 Identities=14% Similarity=0.027 Sum_probs=119.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCC--------------------HHHHHH
Q 011463 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPN----IVTYSTLLNGLCKEGK--------------------LQEAVE 317 (485)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 317 (485)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 344444455555555555555555433210 001 2244445555555555 555555
Q ss_pred HHHHHhHC----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHH
Q 011463 318 ILDRMKLQ----GL-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRA 391 (485)
Q Consensus 318 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a 391 (485)
.+++.... +. +....++..+...+...|++++|...+++..+.. +..........++..+...+... ++++|
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55554321 10 1112355666666777777777777777665421 11100001112233445555555 77777
Q ss_pred HHHHHHHHhCCC-----ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCcHHHH
Q 011463 392 FQVYLSMRNRSI-----SVDSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLP-DEGTWSAVMTALWDRRKMRQA 461 (485)
Q Consensus 392 ~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A 461 (485)
...+++...... .....++..+...|...|++++|...++++.+. +-.+ ...++..+..++.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 777776654211 112557788889999999999999999998764 1111 134667788899999999999
Q ss_pred HHHHHHHHHcC
Q 011463 462 AELLLLELMNK 472 (485)
Q Consensus 462 ~~~~~~~~~~~ 472 (485)
.++++++++..
T Consensus 323 ~~~~~~a~~~~ 333 (338)
T 3ro2_A 323 MHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=1.9e-12 Score=104.34 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=95.0
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
++.+|..++..+...|++++|++.|+++++.+|. +..++..+..+|.+.|++++|+..+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4555666666666666666666666666666554 55666666666666666666666666665543 334455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
.+...++++.+.+.+.+..... +.+...+..+...+... |++++|++.|++..+..+. +..++..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 5666666666666666655543 12333444444444444 6666666666655554322 4555555566666666666
Q ss_pred HHHHHHHHHHH
Q 011463 209 EAKELFKEMET 219 (485)
Q Consensus 209 ~a~~~~~~~~~ 219 (485)
+|.+.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666655554
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=1.5e-13 Score=121.15 Aligned_cols=247 Identities=13% Similarity=0.036 Sum_probs=151.4
Q ss_pred CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC------C
Q 011463 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK-------ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK------G 256 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 256 (485)
...++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777777888888888888888877652 22334556777777888888888888888777653 1
Q ss_pred -CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC---
Q 011463 257 -VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK------RH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ--- 325 (485)
Q Consensus 257 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 325 (485)
.+....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223556777888888888888888888887764 11 223456777888888999999999998887664
Q ss_pred ---C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCcccccchhhhHHHHHHHHhcCChhHHHHH
Q 011463 326 ---G-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG-------ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV 394 (485)
Q Consensus 326 ---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 394 (485)
+ .+....++..+..+|...|++++|...++++.+.. ..+...... .
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------~---------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW-------M---------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH-------H----------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH-------H----------------
Confidence 1 12234577888889999999999999999887531 111111110 0
Q ss_pred HHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
....+..+...+...+.+.++...++...... +....++..+..+|.+.|++++|.++++++++.
T Consensus 243 -----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 243 -----------HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -----------HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11122223333444555555666665555431 223345556666666777777777777766653
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=8.2e-12 Score=109.67 Aligned_cols=220 Identities=10% Similarity=0.062 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-------cCCCh-------HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLC-------KGGCS-------SQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308 (485)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (485)
++|..+|+++.+.. +.+...|..++..+. +.|++ ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666542 335555655555544 34665 7777777777763122255567777777777
Q ss_pred cCCHHHHHHHHHHHhHCCCCC-CHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHh--
Q 011463 309 EGKLQEAVEILDRMKLQGLKP-DAG-LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-- 384 (485)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 384 (485)
.|++++|..+|+++.+. .| +.. +|..++..+.+.|++++|..+|++..+.. |+... ++........
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~------~~~~~a~~~~~~ 181 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHH------VYVTAALMEYYC 181 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTH------HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHH------HHHHHHHHHHHH
Confidence 77788888887777764 33 233 67777777777788888888888777643 32211 1112211111
Q ss_pred cCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHhcCcHHHH
Q 011463 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-CLPD--EGTWSAVMTALWDRRKMRQA 461 (485)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A 461 (485)
..++++|..+|+++.+..+. +...|..++..+.+.|++++|..+|+++++.. ++|+ ...|..++..+.+.|+.++|
T Consensus 182 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 23777888888877765444 66778888888888888888888888888752 3443 45677777777888888888
Q ss_pred HHHHHHHHHcCCC
Q 011463 462 AELLLLELMNKCV 474 (485)
Q Consensus 462 ~~~~~~~~~~~~~ 474 (485)
..+++++++..+.
T Consensus 261 ~~~~~~a~~~~p~ 273 (308)
T 2ond_A 261 LKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHccc
Confidence 8888888886654
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=1.3e-12 Score=118.75 Aligned_cols=236 Identities=11% Similarity=0.023 Sum_probs=120.5
Q ss_pred HHHHHhccCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEF----GCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ-PCVASLNVLIKA 164 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~ 164 (485)
....+...|++++|+..|++..+. +-++ ...++..+..++...|++++|...+.+..+.... ++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------- 178 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---------- 178 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----------
Confidence 344455566666666666665442 1001 1234555555555566666665555554432100 00
Q ss_pred HHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHcc
Q 011463 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS-----PTVVTYTSLINGLCQS 239 (485)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~ 239 (485)
. ......+++.+..+|...|++++|...|++..+.... ....++..+..+|...
T Consensus 179 -------~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 179 -------Y--------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp -------T--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -------c--------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 0 0001234455555555555555555555554432100 0112455555666666
Q ss_pred CCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHhcC
Q 011463 240 KSVEEAMRLFEEMRSK----GV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR----HRPNIVTYSTLLNGLCKEG 310 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~ 310 (485)
|++++|...+++..+. +. +....++..+..++.+.|++++|...+++..+.. .+.....+..+...+...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 6666666666655541 11 2234455566666666666666666666654421 1111222455666666666
Q ss_pred C---HHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 311 K---LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 311 ~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+ +++|..++++... .+.....+..+...|...|++++|...+++..+
T Consensus 318 ~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 5566666555421 112234566677777778888888877777764
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=2.2e-13 Score=121.54 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCC----C-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQG----L-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
++..+...+...|++++|...+++..... . .....++..+...|...|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444445555555555555554443220 0 00123455555566666666666666666554
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=1.3e-12 Score=118.81 Aligned_cols=192 Identities=12% Similarity=0.016 Sum_probs=139.9
Q ss_pred HHhcCCChHHHHHHHHhhhhC----CCCC-CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC------CCChhhHHHHH
Q 011463 165 LCKNSGTMDAAFKIFREMPNR----GCTP-DSYTYGTLINGLCRLGKIYEAKELFKEMETKAC------SPTVVTYTSLI 233 (485)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~ll 233 (485)
+... |++++|...+++..+. +..+ ...++..+..+|...|++++|...+.+..+... +....+++.+.
T Consensus 113 ~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 113 ELDQ-REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3344 7777777777776553 1111 345777888888888888888888887765311 11235788899
Q ss_pred HHHHccCCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCCCChhhHHHHH
Q 011463 234 NGLCQSKSVEEAMRLFEEMRSK----GV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS-----KRHRPNIVTYSTLL 303 (485)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 303 (485)
.+|...|++++|...+++..+. +. .....++..+..+|...|++++|...+++..+ ...+....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 9999999999999999988753 11 11124788899999999999999999999887 32133467788899
Q ss_pred HHHHhcCCHHHHHHHHHHHhHC----CCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQ----GLKPDAGLYGKIISCFCDIGK---YQEAANFLDEM 357 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~ 357 (485)
..+...|++++|...+++..+. +.+.....+..+...+...|+ +++|+.++++.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 9999999999999999987653 112223346678888889999 77777777765
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=1.9e-12 Score=104.42 Aligned_cols=172 Identities=14% Similarity=0.061 Sum_probs=136.7
Q ss_pred CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011463 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 269 (485)
+...|..+..+|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56778888888888888888888888887763 2366778888888888888888888888887764 335666777777
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 011463 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349 (485)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (485)
.+...++++.+...+.......+. +...+..+..++...|++++|+..|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888888776433 67778888888888999999999998888764 4567788888888999999999
Q ss_pred HHHHHHHHHHCCCCCCcc
Q 011463 350 AANFLDEMVLGGITPNRL 367 (485)
Q Consensus 350 a~~~~~~~~~~~~~~~~~ 367 (485)
|...|++..+. .|+..
T Consensus 160 A~~~~~~al~~--~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKKA 175 (184)
T ss_dssp HHHHHHHHHHT--THHHH
T ss_pred HHHHHHHHHhC--CccCH
Confidence 99999988874 35443
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=7.2e-13 Score=123.54 Aligned_cols=216 Identities=9% Similarity=-0.049 Sum_probs=154.9
Q ss_pred CcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh-hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 011463 65 QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP-LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143 (485)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (485)
+++++...++......+. +...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV-EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCch-hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356667777766655443 677777777788888888 88888888877764 345777777888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC---------CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc--------CC
Q 011463 144 RHMREIGIQPCVASLNVLIKALCKNS---------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL--------GK 206 (485)
Q Consensus 144 ~~~~~~~~~~~~~~~~~ll~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 206 (485)
++..+.. |+...+..+... .... |++++|...+++..+.... +...|..+..+|... |+
T Consensus 161 ~~al~~~--p~~~~~~~lg~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMV-LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHH-HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhhC--CCHHHHHHHHHH-HHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 8877754 665444444433 3445 7788888888888776433 677788888888877 88
Q ss_pred HhHHHHHHHHHHHCCCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHH
Q 011463 207 IYEAKELFKEMETKACS--PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284 (485)
Q Consensus 207 ~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (485)
+++|+..|++..+.... .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888775321 367778888888888888888888888887764 335666777777888888888887766
Q ss_pred HHH
Q 011463 285 QMM 287 (485)
Q Consensus 285 ~~~ 287 (485)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=4e-12 Score=118.52 Aligned_cols=217 Identities=11% Similarity=-0.011 Sum_probs=182.6
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL-KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
.+++++..++...... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...+..+...+... |++++|...
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~-g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKK-GDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 3577777888776643 45788899999999999999 99999999999865 23467788888888887 999999999
Q ss_pred HHhhhhCCCCCCHHhHHHHHHHHHHc---------CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--------CC
Q 011463 179 FREMPNRGCTPDSYTYGTLINGLCRL---------GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS--------KS 241 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~ 241 (485)
|++..+.. |+...+..+..++... |++++|++.|++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99999874 5678899999999999 99999999999998864 33678889999999988 99
Q ss_pred HHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 242 VEEAMRLFEEMRSKGVE--PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 242 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
+++|+..|++..+.... .+...+..+..+|...|++++|...|+++.+.... +...+..+..++...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986321 47888999999999999999999999999887543 6778888899999999999999877
Q ss_pred HHHh
Q 011463 320 DRMK 323 (485)
Q Consensus 320 ~~~~ 323 (485)
.++.
T Consensus 316 ~~~~ 319 (474)
T 4abn_A 316 GKTK 319 (474)
T ss_dssp TTCC
T ss_pred cccc
Confidence 6553
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=4.1e-13 Score=118.31 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=115.9
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhc-------CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc------C
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKE-------KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF------G 115 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 115 (485)
+..++..++..+...|++++|..+++++.+. .......++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888888888888888888888763 22224566777888888888888888888887653 1
Q ss_pred -CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhC--
Q 011463 116 -CEPTPKSYITVLAILVEENQLKLAFRFYRHMREI------GIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNR-- 185 (485)
Q Consensus 116 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-- 185 (485)
.+....++..+...+...|++++|...++++.+. +..|. ...+..+...+... |++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 1223556777778888888888888888887653 21222 23444555555555 7788877777776653
Q ss_pred ----CCCC-CHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 186 ----GCTP-DSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 186 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
+..| ...++..+..++...|++++|.+.++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 344566777777777777777777777654
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=6.1e-11 Score=107.40 Aligned_cols=273 Identities=14% Similarity=0.038 Sum_probs=171.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HhhHHHH
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKACSPTV----VTYTSLINGLCQSKSVEEAMRLFEEMRSKGV-EPN----VFTYSSL 267 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 267 (485)
....+...|++++|...+++........+. ..+..+...+...|++++|...+++..+... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344455667777777776666554221111 1344555566667777777777766554210 011 1234556
Q ss_pred HHHHHcCCChHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC----CCHHhHHH
Q 011463 268 MDGLCKGGCSSQAMELLQMMISK----RHR--P-NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK----PDAGLYGK 336 (485)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 336 (485)
...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66777788888888888776653 111 1 2334556777788888888888888887654211 12346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc-cccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCcc---chhhHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRL-TWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV---DSLTYS 411 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~---~~~~~~ 411 (485)
+...+...|++++|...+++.......++.. .+. ..........+... ++++|...+++.......+ ....+.
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI--SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH--HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 8888889999999999999887642222211 111 00000122224455 9999999999887654321 123466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLD----GCLPDE-GTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
.+...+...|++++|...++++... |..++. ..+..+..++...|+.++|...++++++.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7788999999999999999988653 222222 25556777888999999999999998764
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=7.3e-11 Score=107.00 Aligned_cols=231 Identities=9% Similarity=0.016 Sum_probs=159.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC----C-CC-CHHh
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREIGI-QPC----VASLNVLIKALCKNSGTMDAAFKIFREMPNRG----C-TP-DSYT 193 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~-~~-~~~~ 193 (485)
.....+...|++++|...|++..+... .++ ...+..+...+... |+++.|...+++..+.. . .+ ...+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 344556678888888888888775311 122 23455555566666 88888888887776531 1 11 2456
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHhh
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETK----ACS-PTVVTYTSLINGLCQSKSVEEAMRLFEEMRS-----KGVEPNVFT 263 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 263 (485)
++.+..+|...|++++|.+.|++..+. +.+ ....++..+..+|...|++++|...+++..+ .. +....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 778888889999999999888887653 111 1234677788888899999999999988876 43 223667
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhHCCCCCCHHhHHH
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISKRH----RPNIVTYSTLLNGLCKEGK---LQEAVEILDRMKLQGLKPDAGLYGK 336 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (485)
+..+..++.+.|++++|...+++..+... +.....+..+...+...++ +.+|...++.... .+.....+..
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~ 341 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHH
Confidence 78888899999999999999999877422 1123345555666667777 7777777765221 1122346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+...|...|++++|...+++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999998865
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=1e-11 Score=120.42 Aligned_cols=168 Identities=11% Similarity=0.081 Sum_probs=130.0
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.++.+|+.+..++.+.|++++|++.|+++++..+. +..++..+..+|.+.|++++|+..|++..+.+ +.+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 445678888888888888888888888888887765 67788888888888888888888888887764 4457788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
..++...|++++|.+.|++..+.. +-+...++.+...+... |++++|+..|++..+.... +...+..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhccc
Confidence 888888888888888888888754 22355666666666666 8888888888888876433 67778888888888888
Q ss_pred HhHHHHHHHHHHH
Q 011463 207 IYEAKELFKEMET 219 (485)
Q Consensus 207 ~~~a~~~~~~~~~ 219 (485)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777643
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=5e-11 Score=108.10 Aligned_cols=296 Identities=10% Similarity=0.015 Sum_probs=204.1
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHH--HHhcCCcchHH---------HHHHHHhhcCCCCCH----
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISK--LVSANQFRPAE---------DLLDRVNKEKCDITE---- 85 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~~~~g~~~~a~---------~~~~~~~~~~~~~~~---- 85 (485)
...+++++|.++++.+.... .....| ...|..++.. ..-.+.+..+. +.++.+.....+.+.
T Consensus 23 i~~~~~~~A~~l~~~i~~~~-~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~ 101 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDI-QQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY 101 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHG-GGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHH
Confidence 67999999999999887432 222233 3334444332 22234444444 777766543211111
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCC-CC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CC-C
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGC-EP----TPKSYITVLAILVEENQLKLAFRFYRHMREIG--I---QP-C 154 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~ 154 (485)
..+......+...|++++|+..|++..+... .+ ...++..+..++...|+++.|...+++..+.. . .+ .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 1233455667889999999999999875411 12 24567888999999999999999999987531 1 11 1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHhhhhC----CCC-CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH-----CCCCC
Q 011463 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMET-----KACSP 224 (485)
Q Consensus 155 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 224 (485)
..+++.+...+... |++++|...+++..+. +.. ....++..+..+|...|++++|.+.|++... .. +.
T Consensus 182 ~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~ 259 (378)
T 3q15_A 182 IQSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DL 259 (378)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GG
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hh
Confidence 34556666677776 9999999999888763 111 1245778899999999999999999999876 32 23
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCC-Ch
Q 011463 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG----VEPNVFTYSSLMDGLCKGGC---SSQAMELLQMMISKRHRP-NI 296 (485)
Q Consensus 225 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~ 296 (485)
...++..+..++.+.|++++|...+++..+.. .+.....+..+...+...++ ..+|+..++. .+..+ ..
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~ 336 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIE 336 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHH
Confidence 36778889999999999999999999987642 12223445666667778888 7777777765 22222 23
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 011463 297 VTYSTLLNGLCKEGKLQEAVEILDRMKL 324 (485)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (485)
..+..+...|...|++++|...|++..+
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566788899999999999999988764
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=1.5e-10 Score=104.85 Aligned_cols=234 Identities=11% Similarity=-0.002 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH----HHHHHHHHHhccCChhhHHHHHHHHHhcCC-CCC----HhhHH
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDITED----IFLSICRGYGRVHRPLDAMRVFDKMKEFGC-EPT----PKSYI 124 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 124 (485)
......+...|++++|...+++.....+..+.. ++..+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556677777777777666554322221 344555566666777777777666544210 011 12244
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCC----CCHHh
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREI----GIQ--PC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT----PDSYT 193 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 193 (485)
.+...+...|++++|...+++..+. +.. |. ...+..+...+... |++++|...+++..+.... ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5555666667777777666665542 111 11 12233333444444 6666666666665543211 12234
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HhhH
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTV-VTYT-----SLINGLCQSKSVEEAMRLFEEMRSKGVEPN---VFTY 264 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 264 (485)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555666666666666666666665432111110 1111 122234455666666666655543321110 1123
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 011463 265 SSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
..+...+...|++++|...++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=3.9e-11 Score=96.60 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=91.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3444555555555555555555555544332 44555555555555566666666665555442 334555555555566
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHH
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 211 (485)
..|++++|.+.++++.+.. +.+...+..+...+... |++++|...++++.+... .+...+..+..++...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNL-GRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655543 22344444444555554 666666666666655432 24556666666666666666666
Q ss_pred HHHHHHHHC
Q 011463 212 ELFKEMETK 220 (485)
Q Consensus 212 ~~~~~~~~~ 220 (485)
+.+++..+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666666543
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=6.1e-11 Score=95.46 Aligned_cols=161 Identities=11% Similarity=0.032 Sum_probs=91.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.++..+...|++++|+..|+.+. ...+.+..++..++..+...|++++|.+.++++....+. +...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 87 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVY----DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTC----CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH----HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 44555556666666666666665 223345555666666666666666666666666555433 4555556666666
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+... |++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQM-GRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHc-CCHHHHH
Confidence 6666666666666665543 3345555556666666666666666666665543 22344455555555554 6666666
Q ss_pred HHHHhhhhC
Q 011463 177 KIFREMPNR 185 (485)
Q Consensus 177 ~~~~~~~~~ 185 (485)
..++.+.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666655543
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=2.2e-11 Score=118.17 Aligned_cols=163 Identities=10% Similarity=0.100 Sum_probs=143.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
++..+..++.++|++++|++.|+++++ -.|.+..+|..+..+|.+.|++++|++.|+++++.++. +...|..+..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALE----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 467789999999999999999999993 33567899999999999999999999999999999876 7899999999
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
++.+.|++++|++.|++..+.+ +.+..+|..+..++...|++++|++.|++.++.. +-+...+..+...+... |+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~-g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIV-CDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhc-ccHH
Confidence 9999999999999999999875 4568899999999999999999999999999865 22456677777777777 9999
Q ss_pred HHHHHHHhhhh
Q 011463 174 AAFKIFREMPN 184 (485)
Q Consensus 174 ~a~~~~~~~~~ 184 (485)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=3.2e-10 Score=94.76 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=120.3
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 127 (485)
.|+..+...+..+...|++++|.+.|+++....+.++...+..+..++...|++++|+..|++..+.+ +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45566777777777777777777777777776653466666667777777777777777777777653 33456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCC---HHhHHH
Q 011463 128 AILVEENQLKLAFRFYRHMREIGIQPC-V-------ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD---SYTYGT 196 (485)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-------~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 196 (485)
.++...|++++|...+++..+.. |+ . ..+..+...+... |++++|...++++.+. .|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQA-GNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 77777777777777777777644 33 2 2344444455555 7778888877777765 232 455666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+..+|...| ...++++...+. .+...+.... ....+.+++|...+++..+.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666665433 233444433321 1223332222 22345577788888877765
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=2.3e-10 Score=95.66 Aligned_cols=201 Identities=16% Similarity=0.077 Sum_probs=138.2
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHH
Q 011463 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232 (485)
Q Consensus 153 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (485)
.++..+......+... |++++|...|+...+...+++...+..+..++...|++++|++.|++..+... .+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNA-KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 3456666666677776 88888888888888875535777777788888888888888888888887632 256677888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--ChhhHHHHH
Q 011463 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNV-------FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP--NIVTYSTLL 303 (485)
Q Consensus 233 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 303 (485)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.++++++.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 888888888888888888888763 2234 446677777788888888888888887752 12 245566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (485)
.+|...| ...++.+...+ ..+...+.... ....+.+++|...+++..+. .|+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 6665433 33445554443 22344444333 23456679999999999874 45543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=1e-11 Score=107.55 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC------C-C
Q 011463 262 FTYSSLMDGLCKGGCSSQAMELLQMMISK------R-HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ------G-L 327 (485)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 327 (485)
.++..+...|...|++++|...++++... . .+....++..+...+...|++++|...+++..+. + .
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445555555555555555555554432 0 1112445556666666667777776666665543 1 1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+....++..+..+|...|++++|...++++.+
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12345677777778888888888888877765
No 86
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.30 E-value=7.9e-09 Score=96.21 Aligned_cols=377 Identities=10% Similarity=0.028 Sum_probs=202.5
Q ss_pred cC-CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-hh
Q 011463 25 EK-DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR-PL 102 (485)
Q Consensus 25 ~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 102 (485)
.| ++..|+.+|+.++... |. |+++.+..+|++.... -|+...|...+....+.+. .+
T Consensus 7 ~~~~i~~aR~vyer~l~~~-----P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~ 65 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY-----MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKF 65 (493)
T ss_dssp -----CCHHHHHHHHHHHH-----HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----
T ss_pred cCcchHHHHHHHHHHHHHC-----CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHH
Confidence 45 3667777777776321 11 6778888888887775 3477777777766655553 35
Q ss_pred hHHHHHHHHHhc-CC-CCCHhhHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCCChHH
Q 011463 103 DAMRVFDKMKEF-GC-EPTPKSYITVLAILV----EENQLKLAFRFYRHMREIGIQPC-V-ASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 103 ~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~~~~~~~ 174 (485)
....+|+..... |. +.+...|...+..+. ..++.+.+..+|++.+.. ++. . ..|..... +... .....
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~-~~~~~ 141 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELE-LNKIT 141 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHH-HCHHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHH-hcccc
Confidence 566677766543 32 235566776666543 345677777788877762 221 1 11111111 1111 11222
Q ss_pred HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--C-----CHHHHHH
Q 011463 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS--K-----SVEEAMR 247 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~-----~~~~a~~ 247 (485)
+.+++.+.. +.+..|..+++.+...-...+...|...+.--... + ..+.+..
T Consensus 142 ~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 142 GKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 222222211 11222222222222110000122333333221111 0 0334556
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC-
Q 011463 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG- 326 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 326 (485)
+|+++.... +.+...|...+..+.+.|+.+.|..++++++.. +.+...+. .|....+.++. ++.+.+.-
T Consensus 201 ~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 201 IHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHH
Confidence 777766642 445666766777777777888888888877776 22322222 12211111111 22221110
Q ss_pred --------C---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHH
Q 011463 327 --------L---KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVY 395 (485)
Q Consensus 327 --------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 395 (485)
. .....+|...+....+.++.+.|..+|+++ + .|. .++. .-+..+.+......+++.|..+|
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~---~~~-~~~~--v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G---NEG-VGPH--VFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T---TSC-CCHH--HHHHHHHHHHHHHCCSHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h---CCC-CChH--HHHHHHHHHHHHCCChHHHHHHH
Confidence 0 011245666666666788899999999998 3 122 1221 11111233333333789999999
Q ss_pred HHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+...+..+. ++..|...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++++
T Consensus 344 e~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 998875433 45566777887888999999999999973 2466788877766788999999999998875
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=6.7e-11 Score=102.43 Aligned_cols=227 Identities=13% Similarity=0.007 Sum_probs=154.0
Q ss_pred HHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC------CC-CCCHHhHHH
Q 011463 131 VEENQLKLAFRFYRHMREI-------GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR------GC-TPDSYTYGT 196 (485)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 196 (485)
...|++++|..++++..+. ..+.....+..+...+... |++++|...++++.+. +. +....++..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3467777777777776652 1122345566677777776 9999999999998764 22 224567888
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCCHh
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKA-------CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK------G-VEPNVF 262 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 262 (485)
+..++...|++++|.+.|++..... .+....++..+...+...|++++|...+++..+. + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999987641 1234567888889999999999999999998764 1 122356
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhC-------CCCCC-hhhHHHHHHHHHhcCCHH------HHHHHHHHHhHCCCC
Q 011463 263 TYSSLMDGLCKGGCSSQAMELLQMMISK-------RHRPN-IVTYSTLLNGLCKEGKLQ------EAVEILDRMKLQGLK 328 (485)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~ 328 (485)
++..+..+|...|++++|...++++.+. ...+. ...+..+...+...+... .+...+..... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7788889999999999999999998763 11222 233333333333333322 22222222111 112
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
....++..+..+|...|++++|..++++..+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345788899999999999999999999875
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=2.2e-10 Score=99.60 Aligned_cols=213 Identities=12% Similarity=-0.011 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHH
Q 011463 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK----RHRP-NIVTYSTLLNGLCKEGKLQEA 315 (485)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 315 (485)
++++|...+.+. ...|...|++++|...|.+.... +.++ ...++..+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 23455667777777777666543 1111 145667777777777888877
Q ss_pred HHHHHHHhHCCC---CC--CHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-Ch
Q 011463 316 VEILDRMKLQGL---KP--DAGLYGKIISCFCDI-GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388 (485)
Q Consensus 316 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 388 (485)
...+++..+... .+ ...++..+..+|... |++++|+..+++..+. .|+.........++..+...+... ++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 777777654310 01 134678888899986 9999999999998863 232111111123444677777777 99
Q ss_pred hHHHHHHHHHHhCCCccchh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHH--h
Q 011463 389 NRAFQVYLSMRNRSISVDSL------TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG------TWSAVMTALW--D 454 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~ 454 (485)
++|...|+++.+..+..... .|..+..++...|++++|+..|++..+. .|+.. .+..++.++. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCC
Confidence 99999999999875543221 5677888899999999999999999864 34322 2344555554 4
Q ss_pred cCcHHHHHHHHHHHHHcC
Q 011463 455 RRKMRQAAELLLLELMNK 472 (485)
Q Consensus 455 ~g~~~~A~~~~~~~~~~~ 472 (485)
.+++++|++.++++++.+
T Consensus 253 ~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp TTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHhccCCccH
Confidence 577999999988776643
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=6.1e-11 Score=91.55 Aligned_cols=142 Identities=10% Similarity=0.070 Sum_probs=112.1
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
|..++...|++++|+..++.+. ...|.++..+..+...|.+.|++++|++.|+++++.++. +..+|..+..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~----~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST----PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS----CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhc----ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4566788899999999999988 333445667888999999999999999999999999876 88999999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCH-HHHHHHHHHHHh
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF-YRHMREIGIQPCV-ASLNVLIKALCK 167 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~-~~~~~ll~~~~~ 167 (485)
.|++++|+..|++..+.+ |.+..++..+..++.+.|+++++.+. +++..+.. |+. ..+......+..
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDC 146 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHH
Confidence 999999999999999875 45688899999999999998776654 58888754 544 444444444333
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=1.3e-08 Score=86.59 Aligned_cols=244 Identities=12% Similarity=0.068 Sum_probs=149.2
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
+-..-.|+++.++.-...+. . .........+.++++..|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~-----~-~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~ 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS-----K-VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS-----C-CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT
T ss_pred HHHHHhhHHHHHHHHHHhcC-----c-cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc
Confidence 33445788888887443332 1 11223344456888888887742 11223333444443333 222
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI-QPCVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
|+..|+++.+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+. |+.+.|.+.
T Consensus 85 ----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~-~r~d~A~k~ 158 (310)
T 3mv2_B 85 ----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN-NNVSTASTI 158 (310)
T ss_dssp ----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred ----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC-CCHHHHHHH
Confidence 677777777654 45566666777888888888888888888766552 12445566666777776 888888888
Q ss_pred HHhhhhCCCCC-----CHHhHHHHHHH--HHHcC--CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 179 FREMPNRGCTP-----DSYTYGTLING--LCRLG--KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 179 ~~~~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
++.|.+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|...+
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 8888765 34 24455555555 33334 788888888887654 334233344445777888888888888
Q ss_pred HHHHhCC---------CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 011463 250 EEMRSKG---------VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291 (485)
Q Consensus 250 ~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (485)
+.+.+.. -+-++.++..++......|+ +|.++++++.+..
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 7665420 02355566455555555665 7778888887764
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.21 E-value=4.2e-10 Score=92.32 Aligned_cols=159 Identities=9% Similarity=-0.017 Sum_probs=84.8
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHH----------------HHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSL----------------MISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
.+..+...|++++|+..|++++. ..|.++..|.. +..++.+.|++++|...|+++++..|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 34556678888888888888772 22334555555 56666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHH
Q 011463 82 DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ--LKLAFRFYRHMREIGIQPCVASLN 159 (485)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 159 (485)
. +...+..+..++...|++++|+..|++..+.+ |.+..++..+..++...|+ ...+...+..... ..|....+.
T Consensus 86 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 86 N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 4 55666666666666666666666666666553 3345555555555544332 2233333433321 111111111
Q ss_pred HHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 160 VLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 160 ~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
.....+... |++++|...|++..+.
T Consensus 162 ~~g~~~~~~-~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 162 RDGLSKLFT-TRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHH-HTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHc-cCHHHHHHHHHHHHHh
Confidence 122222333 5566666666665554
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=5.5e-09 Score=88.87 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=83.1
Q ss_pred HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC-SPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
+...+++..+.+ .++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444433 22333444555555555555555555555544322 1133444455555555555555555555555
Q ss_pred hCCCCC-----CHhhHHHHHHHHH----cCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 011463 254 SKGVEP-----NVFTYSSLMDGLC----KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324 (485)
Q Consensus 254 ~~~~~~-----~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (485)
+. .| +..+...++.++. ..+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 1233333333321 122556666666665443 12222222333355566666666666654433
Q ss_pred CC---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 325 QG---------LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 325 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
.. -+.++.++..++......|+ +|.+++.++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 10 02244445444444444454 55566666655
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=1.3e-09 Score=94.72 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC---CC--CHHHHHHHHHHHhccCCh
Q 011463 27 DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DI--TEDIFLSICRGYGRVHRP 101 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~ 101 (485)
++++|...|+++. ..|...|++++|.+.|++...... .+ ...++..+..+|.+.|++
T Consensus 32 ~~~~A~~~~~~a~------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 93 (292)
T 1qqe_A 32 KFEEAADLCVQAA------------------TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93 (292)
T ss_dssp HHHHHHHHHHHHH------------------HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHH------------------HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCH
Confidence 4777888777663 245677888888888877765421 11 145777888888888888
Q ss_pred hhHHHHHHHHHhcCC---CC--CHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC
Q 011463 102 LDAMRVFDKMKEFGC---EP--TPKSYITVLAILVEE-NQLKLAFRFYRHMREIGIQ-PC----VASLNVLIKALCKNSG 170 (485)
Q Consensus 102 ~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~ 170 (485)
++|+..|++..+... .+ -..++..+..+|... |++++|...|++..+.... .+ ..++..+...+... |
T Consensus 94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g 172 (292)
T 1qqe_A 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-G 172 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-C
Confidence 888888887765310 01 134677778888885 8888888888887763210 01 24566667777776 8
Q ss_pred ChHHHHHHHHhhhhCCCCCCH------HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-C---hhhHHHHHHHHH--c
Q 011463 171 TMDAAFKIFREMPNRGCTPDS------YTYGTLINGLCRLGKIYEAKELFKEMETKACSP-T---VVTYTSLINGLC--Q 238 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~ll~~~~--~ 238 (485)
++++|...|++..+....... ..+..+..++...|++++|...|++..+..... + ...+..++.++. .
T Consensus 173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 888888888888776432221 156677778888888888888888876532110 1 112344555554 4
Q ss_pred cCCHHHHHHHHHHHHh
Q 011463 239 SKSVEEAMRLFEEMRS 254 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~ 254 (485)
.+++++|+..|+.+..
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 5668888888766654
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.19 E-value=3.8e-10 Score=110.04 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=84.2
Q ss_pred HccCCHHHHHHHHHHhhh----hhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 23 RAEKDVNKALVIFDSATA----EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
...|++++|++.|++++. ......+.+...+..+...+...|++++|.+.|+++.+.++. +...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 445555555555555540 000122334445555555555555555555555555555443 445555555555555
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
|++++|+..|++..+.+ +.+...+..+..++...|++++ .+.|++..+.+ +.+...+..+...+... |++++|...
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~-g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAE-GDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 55555555555555543 2234455555555555555555 55555555433 12233444444444444 555555555
Q ss_pred HHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 179 FREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
|+++.+.+.. +...+..+..++..
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHc
Confidence 5555544211 23344444444433
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=1.1e-09 Score=82.85 Aligned_cols=128 Identities=9% Similarity=0.140 Sum_probs=90.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..++..+...|++++|+.+|+.+.. ..+.+...+..++..+...|++++|...++++....+. +...+..+...+
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 79 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALE----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH----cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 3456667777788888888877762 22445667777777777777778888777777766543 566677777777
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777776653 345666777777777777777777777777654
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=2e-09 Score=91.95 Aligned_cols=103 Identities=9% Similarity=0.056 Sum_probs=73.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC---HHHHHHHHHHHhccCChhhHHHHHHHHHhcCC--CCCHh
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT---EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC--EPTPK 121 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 121 (485)
+.++..+..++..+.+.|++++|.+.|+.++...+. + ...+..+..+|.+.|++++|+..|++..+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 445667777777788888888888888888777554 3 56677777788888888888888888777531 11244
Q ss_pred hHHHHHHHHHH--------cCCHHHHHHHHHHHHHcC
Q 011463 122 SYITVLAILVE--------ENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 122 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~ 150 (485)
++..+..++.. .|++++|...|+++.+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 56666777777 778888888888877654
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=2.1e-09 Score=88.18 Aligned_cols=166 Identities=11% Similarity=0.053 Sum_probs=97.5
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH----------------HHHHHhccCChhhHHHHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS----------------ICRGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~ 112 (485)
++..+...+..+...|++++|...|+++....|. +...+.. +..++.+.|++++|+..|++..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555677788899999999999998887544 4555655 6666777777777777777776
Q ss_pred hcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC--hHHHHHHHHhhhhCCCCCC
Q 011463 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT--MDAAFKIFREMPNRGCTPD 190 (485)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 190 (485)
+.+ |.+...+..+..++...|++++|...|++..+.. +.+...+..+...+... |+ ...+...++.... ..|.
T Consensus 82 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~-~~~~~~~~~~~~~~~~~--~~~~ 156 (208)
T 3urz_A 82 QKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT-AEQEKKKLETDYKKLSS--PTKM 156 (208)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-HHHHHHHHHHHHC---C--CCHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhC--CCch
Confidence 654 3456666777777777777777777777776644 12333444444443332 22 2333444433322 1222
Q ss_pred HHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 191 SYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
...+.....++...|++++|...|++..+.
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 223333444555566666666666666553
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.17 E-value=3.3e-08 Score=85.03 Aligned_cols=221 Identities=10% Similarity=0.077 Sum_probs=156.6
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcC--CcchHHHHHHHHhhcCCCCCHHHHHHHHHHH----hcc
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN--QFRPAEDLLDRVNKEKCDITEDIFLSICRGY----GRV 98 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 98 (485)
....++|+.+++.++ .-.|.+..+|+....++...| +++++++.++.++..+|+ +..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L----~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 46 EEYSERALHITELGI----NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp TCCSHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH----HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 334468888888888 233556677888888888888 888888888888888776 666776655555 444
Q ss_pred ---CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC--
Q 011463 99 ---HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK--LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT-- 171 (485)
Q Consensus 99 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-- 171 (485)
+++++++.+++++.+.. +.+..+|+...-++.+.|.++ ++++.++++.+... -+...|+.-...+... +.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l-~~~~ 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSK-KHLA 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSS-GGGC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc-cccc
Confidence 67888888888888765 557778887777777788877 88888888887652 3555666555544444 54
Q ss_pred ----hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHH
Q 011463 172 ----MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE-AKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEE 244 (485)
Q Consensus 172 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~ 244 (485)
++++++.++.+....+. |...|+.+...+.+.|+... +..+..++...+ -+.+...+..+..++.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 77788888877776544 77788877777777777443 445555554432 13356677777777777788888
Q ss_pred HHHHHHHHHh
Q 011463 245 AMRLFEEMRS 254 (485)
Q Consensus 245 a~~~~~~~~~ 254 (485)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887775
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=4.9e-09 Score=89.48 Aligned_cols=173 Identities=14% Similarity=0.075 Sum_probs=124.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccc
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD---AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (485)
+...+..+...+...|++++|...|+++.+.. +.+ ...+..+..+|...|++++|...|++..+.. |+....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~-- 88 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QIDPRV-- 88 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTH--
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCCchh--
Confidence 45556666677777888888888888877753 223 5667777778888888888888888887742 332111
Q ss_pred hhhhHHHHHHHHhc--------C-ChhHHHHHHHHHHhCCCccchhhH-----------------HHHHHHHHhcCCHHH
Q 011463 372 HIRIHNTVVQGLCK--------T-DPNRAFQVYLSMRNRSISVDSLTY-----------------SSLITCFCKKGDIHK 425 (485)
Q Consensus 372 ~~~~~~~l~~~~~~--------~-~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~ 425 (485)
..++..+...+.. . ++++|...|+++.+..+. +.... ..+...|...|++++
T Consensus 89 -~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 89 -PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp -HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 1222245555555 5 899999999999886544 33333 456888999999999
Q ss_pred HHHHHHHHHhCCCCCC----hhhHHHHHHHHHhc----------CcHHHHHHHHHHHHHcCCCcc
Q 011463 426 SARIVDELVLDGCLPD----EGTWSAVMTALWDR----------RKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 426 a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 476 (485)
|+..|+++++. .|+ ...+..+..+|... |++++|+..++++++..+..+
T Consensus 167 A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 167 AAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 99999999986 343 34566777788766 999999999999999876554
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=1e-09 Score=106.98 Aligned_cols=172 Identities=12% Similarity=-0.013 Sum_probs=98.2
Q ss_pred HhcCCcchHHHHHHHHh--------hcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 61 VSANQFRPAEDLLDRVN--------KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
...|++++|++.++++. ...+. +...+..+...+...|++++|+..|++..+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666666666666666 43333 45566666666666666666666666666543 3355666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHH
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 212 (485)
.|++++|.+.|++..+.. +-+...+..+...+... |++++ ...|+++.+.+.. +...+..+..++.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666643 11333444444445554 66666 6666666655322 45566666666666666666666
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHHHccC
Q 011463 213 LFKEMETKACSPT-VVTYTSLINGLCQSK 240 (485)
Q Consensus 213 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 240 (485)
.|++..+. .|+ ...+..+..++...+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 66665543 222 344444455544433
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=5.6e-09 Score=78.73 Aligned_cols=127 Identities=11% Similarity=0.194 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
+..++..+...|++++|..+++++....+. +...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 344444555555555555555555444332 34444444455555555555555555544432 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhh
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 183 (485)
.|++++|.+.++++.+.. +.+...+..+...+... |++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHH-ccHHHHHHHHHHHH
Confidence 444444444444444432 11223333333333333 44444444444433
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.11 E-value=1.7e-09 Score=86.15 Aligned_cols=158 Identities=9% Similarity=0.071 Sum_probs=77.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH-H
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG-Y 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 95 (485)
..+..+...|++++|+..|++++. ..|.++..+..+..++...|++++|...++.+....+ +...+..+... +
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD----ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH----HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 445556666666666666666552 2244555666666666666666666666666655433 33222221111 1
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCChHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP-CVASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~ 174 (485)
...+....|+..+++..+.. |.+...+..+..++...|++++|...|+++.+....+ +...+..+...+... |+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~-g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL-GQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH-CSSCH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh-CCCCc
Confidence 11122233455555555442 2234555555555555555555555555555533111 122344444444444 55555
Q ss_pred HHHHHHhh
Q 011463 175 AFKIFREM 182 (485)
Q Consensus 175 a~~~~~~~ 182 (485)
|...|++.
T Consensus 163 A~~~y~~a 170 (176)
T 2r5s_A 163 IASKYRRQ 170 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=1.8e-09 Score=85.93 Aligned_cols=162 Identities=10% Similarity=0.060 Sum_probs=105.3
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI- 129 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 129 (485)
..+......+...|++++|...|+++....|. +...+..+..++...|++++|+..|++..... |++..+......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 34556677778888888888888888777655 67778888888888888888888888877653 344333322212
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCC-CHHhHHHHHHHHHHcCCH
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP-DSYTYGTLINGLCRLGKI 207 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 207 (485)
+...+....+...+++..+.. |+ ...+..+...+... |++++|...|+++.+..+.+ +...+..+..++...|+.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN--PDNFELACELAVQYNQV-GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHhhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 122223334566777766643 43 45555555555555 77777777777777664332 245666777777777777
Q ss_pred hHHHHHHHHHH
Q 011463 208 YEAKELFKEME 218 (485)
Q Consensus 208 ~~a~~~~~~~~ 218 (485)
++|...|++..
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776654
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=5.9e-09 Score=90.19 Aligned_cols=165 Identities=14% Similarity=0.078 Sum_probs=84.5
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHH-H
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT-V 126 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 126 (485)
.+...+..+...+...|++++|.+.|+++....+. +...+..+...+...|++++|...++++.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 34445555555566666666666666666655544 45555556666666666666666666555432 33322221 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCC-CHHhHHHHHHHHHHcC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP-DSYTYGTLINGLCRLG 205 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 205 (485)
...+...++.+.|...+++..... +.+...+..+...+... |++++|...+.++.+..... +...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 222444455555555555555543 12233344444444444 56666666665555543221 1344555555555555
Q ss_pred CHhHHHHHHHHH
Q 011463 206 KIYEAKELFKEM 217 (485)
Q Consensus 206 ~~~~a~~~~~~~ 217 (485)
+.++|...|++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555555555543
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=1.3e-07 Score=81.43 Aligned_cols=232 Identities=10% Similarity=0.033 Sum_probs=125.9
Q ss_pred HHHHhcCCc-chHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC--ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH----
Q 011463 58 SKLVSANQF-RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH--RPLDAMRVFDKMKEFGCEPTPKSYITVLAIL---- 130 (485)
Q Consensus 58 ~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 130 (485)
++..+.|.+ ++|+++++.++..+|. +..+|+.-..++...| +++++++.++.+...+ |-+..+|+.-..++
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHH
Confidence 333445544 5888888888888776 7778888888887777 8888888888888764 34555665554444
Q ss_pred HHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH--HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 131 VEE---NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD--AAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 131 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
... +++++++++++++.+.. +-+...|+.-.-.+... |.++ ++++.++.+.+.++. |...|+.-..++...+
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l-~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTF-DLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 333 55666666666666544 22344444444333343 5555 666666666655433 5555555444444444
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHH-HHHHH
Q 011463 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ-AMELL 284 (485)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 284 (485)
... ....++++++.++.+.... +-|...|+.....+.+.|+... +..+.
T Consensus 195 ~~~-----------------------------~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 195 HLA-----------------------------TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp GGC-----------------------------CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ccc-----------------------------hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 300 0000444444444444432 2244444444444444444222 33333
Q ss_pred HHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 011463 285 QMMISKR--HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324 (485)
Q Consensus 285 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (485)
..+...+ ...+...+..+...+.+.|+.++|.++++.+.+
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3333221 122445555555555555666666666666554
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=2.6e-08 Score=81.78 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011463 85 EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN----QLKLAFRFYRHMREIGIQPCVASLNV 160 (485)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+..+..+...|...+++++|+..|++..+.| ++.++..+...|.. + ++++|.++|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444444444444444444332 33333333333333 3 4444444444444332 2222222
Q ss_pred HHHHHHh----cCCChHHHHHHHHhhhhCCCC-CCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHH
Q 011463 161 LIKALCK----NSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCR----LGKIYEAKELFKEMET 219 (485)
Q Consensus 161 ll~~~~~----~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 219 (485)
+-..+.. . +++++|..+|++..+.|.. .....+..|..+|.. .+++++|..+|++..+
T Consensus 91 Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 91 LARVLVNRQAGA-TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3222222 2 4444555555444444311 013344444444444 4444555555554444
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=1.3e-08 Score=83.61 Aligned_cols=176 Identities=12% Similarity=0.048 Sum_probs=141.9
Q ss_pred HHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC----ChhhH
Q 011463 29 NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH----RPLDA 104 (485)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a 104 (485)
.+|++.|+++. .. -++.++..+...|...+++++|.++|++..+.+ +...+..+...|.. + ++++|
T Consensus 3 ~eA~~~~~~aa---~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 3 TEPGSQYQQQA---EA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp -CTTHHHHHHH---HT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred chHHHHHHHHH---HC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 35778888887 33 478888999999999999999999999998864 67888888888887 6 89999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh----cCCChH
Q 011463 105 MRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKLAFRFYRHMREIGIQPC---VASLNVLIKALCK----NSGTMD 173 (485)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~----~~~~~~ 173 (485)
+.+|++..+.| ++.++..+...|.. .+++++|.++|++..+.+ |+ ...+..+-..+.. . ++++
T Consensus 73 ~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~-~d~~ 146 (212)
T 3rjv_A 73 RQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGP-EDDV 146 (212)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSS-CCHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCC-CCHH
Confidence 99999998764 77888888888877 889999999999999876 42 5666666666666 5 7899
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc-C-----CHhHHHHHHHHHHHCCC
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRL-G-----KIYEAKELFKEMETKAC 222 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 222 (485)
+|...|++..+. ..+...+..|..+|... | ++++|..+|++..+.|.
T Consensus 147 ~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999886 22445677788887754 3 89999999999887753
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=1.8e-08 Score=83.76 Aligned_cols=201 Identities=9% Similarity=-0.022 Sum_probs=94.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH--HHHHHHHHHH
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE--DIFLSICRGY 95 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 95 (485)
++..+...|++++|+..|+.++.. ....+.....+..++.++.+.|++++|++.|+++.+..|.... ..+..+..++
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 445556666666666666666621 0010111245555566666666666666666666655443111 1233333333
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
...|.. .+ ..|..+...+...|++++|...|+++++.. |+..........+..
T Consensus 89 ~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~-------- 141 (225)
T 2yhc_A 89 MALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF-------- 141 (225)
T ss_dssp HHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH--------
T ss_pred Hhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH--------
Confidence 322110 00 001111122223456666666666666543 332211111000000
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP--TVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
+...+ ......+...|.+.|++++|...|+++.+..... ....+..+..++.+.|++++|...++.+.
T Consensus 142 --~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 142 --LKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp --HHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 00000 0111345666777777777777777776652111 12456667777777777777777777776
Q ss_pred hCC
Q 011463 254 SKG 256 (485)
Q Consensus 254 ~~~ 256 (485)
..+
T Consensus 212 ~~~ 214 (225)
T 2yhc_A 212 ANS 214 (225)
T ss_dssp HCC
T ss_pred hhC
Confidence 653
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=1.6e-08 Score=84.01 Aligned_cols=167 Identities=8% Similarity=-0.021 Sum_probs=96.0
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH---HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN---STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
....++.++...|++++|+..|++++.. .|.++ .++..+..++...|.. . ...+..
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~P~~~~~~~a~~~~g~~~~~~~~~-----~------------~~~~~~ 101 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRL----NPTHPNIDYVMYMRGLTNMALDDS-----A------------LQGFFG 101 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCCcHHHHHHHHHHHHHhhhhh-----h------------hhhhhc
Confidence 4566788999999999999999999942 12222 3566666666654421 1 112233
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 170 (485)
+...+...|++++|+..|+++.+.. |.+...+....... .+...+.. ....+...+.+. |
T Consensus 102 ~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~~--------~~~~~a~~~~~~-~ 161 (225)
T 2yhc_A 102 VDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLAK--------YEYSVAEYYTER-G 161 (225)
T ss_dssp ------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHH-T
T ss_pred cchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHc-C
Confidence 4444556778888888888887753 22333332221110 00011100 112233445565 8
Q ss_pred ChHHHHHHHHhhhhCCCCC--CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 011463 171 TMDAAFKIFREMPNRGCTP--DSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (485)
++++|...|+.+.+..+.. ....+..+..++.+.|++++|.+.++.+...+
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 8888888888887763221 12467778888888888888888888877663
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=5.3e-09 Score=90.45 Aligned_cols=160 Identities=14% Similarity=0.030 Sum_probs=130.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..++..+.+.|++++|+..|++++. ..|.++..+..++..+...|++++|...++++....+. ...........+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~~~l 195 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQ----LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHHHHH
Confidence 4566778899999999999999993 34667889999999999999999999999999887653 223333334456
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCCh
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC---VASLNVLIKALCKNSGTM 172 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~ 172 (485)
...++.+.|+..+++..... |.+...+..+...+...|++++|...|.++.+.. |+ ...+..+...+... |+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~-g~~ 271 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAAL-GTG 271 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHH-CTT
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHc-CCC
Confidence 77888999999999998875 5678899999999999999999999999999865 44 45677777777777 999
Q ss_pred HHHHHHHHhhhh
Q 011463 173 DAAFKIFREMPN 184 (485)
Q Consensus 173 ~~a~~~~~~~~~ 184 (485)
+.|...+++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999988887653
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=9.9e-10 Score=84.67 Aligned_cols=143 Identities=15% Similarity=0.004 Sum_probs=73.9
Q ss_pred HHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHH
Q 011463 58 SKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137 (485)
Q Consensus 58 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (485)
..+...|++++|++.++......+. +...+..+...|.+.|++++|++.|++..+.+ |.+..+|..+..++...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3444555666666666665544322 33344455666666666666666666665543 334556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH-HHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK-IFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
+|...|++..+.. +-+...+..+...+.+. |+++++.+ ++++..+..+. ++.+|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666666666543 11234444444455554 55544433 33555544222 4445554444444444
No 112
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=1.2e-06 Score=81.56 Aligned_cols=312 Identities=11% Similarity=0.007 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCC-cchHHHHHHHHhhc-CCC-CCHHHHHHHHHHHhc----c
Q 011463 26 KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ-FRPAEDLLDRVNKE-KCD-ITEDIFLSICRGYGR----V 98 (485)
Q Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~----~ 98 (485)
|+++.+..+|++++ . ..|++..|...+....+.+. .+....+|+.+... |.. .+...|...+..+.. .
T Consensus 28 ~~~e~~~~iferal----~-~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 28 KDYRSLESLFGRCL----K-KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp TCHHHHHHHHHHHS----T-TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCHHHHHHHHHHHh----c-cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 89999999999999 2 34699999999888877763 46678888887764 322 367888888876542 4
Q ss_pred CChhhHHHHHHHHHhcCCCCC--HhhHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPT--PKSYITVLAILVE-------------ENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 163 (485)
|+.+.+..+|++.+.. |+. ...|......-.. .+.+..|..+++.+...--..+...|...+.
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~ 180 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLID 180 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 6788899999999873 322 2223322221111 1122233333333332100012234444443
Q ss_pred HHHhcC-CC-----hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011463 164 ALCKNS-GT-----MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237 (485)
Q Consensus 164 ~~~~~~-~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 237 (485)
.--... +- .+.+..+|++++... +.+...|...+..+.+.|+.+.|..+|++.... +.+...+.. |.
T Consensus 181 ~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~ 253 (493)
T 2uy1_A 181 LEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YG 253 (493)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HH
T ss_pred HHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HH
Confidence 321110 00 234556677766643 235666777777777777777777777777765 222222211 11
Q ss_pred ccCCHHHHHHHHHHHHhCC---------C---CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011463 238 QSKSVEEAMRLFEEMRSKG---------V---EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305 (485)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (485)
.....++. ++.+.+.- . ......|...+....+.++.+.|..+|+.+ .. ...+...|......
T Consensus 254 ~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~l 328 (493)
T 2uy1_A 254 LVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFI 328 (493)
T ss_dssp HHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHH
T ss_pred hhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHH
Confidence 11110111 11111100 0 001133444444444555566666666666 21 11222333221111
Q ss_pred HHh-cCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 306 LCK-EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 306 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
-.. .++.+.|..+|+...+.. +.++..+...+......|+.+.|..+|+++
T Consensus 329 E~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 329 EYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 224666666666655532 223334444455555566666666666654
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=5.6e-09 Score=100.08 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=112.8
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 104 (485)
.|++++|++.|+++. ...+.+...+..+...+...|++++|.+.+++..+..+. +...+..+...|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAV----RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 478899999999988 334567888999999999999999999999999988765 788899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC---CChHHHHHHHH
Q 011463 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNS---GTMDAAFKIFR 180 (485)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~---~~~~~a~~~~~ 180 (485)
.+.|++..+.. +.+...+..+..++...|++++|.+.+++..+.. |+ ...+..+...+.. . |++++|.+.++
T Consensus 77 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 77 AVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRR-LCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-hhccccHHHHHHHHH
Confidence 99999998875 4567889999999999999999999999998865 44 4445555544443 5 88999999999
Q ss_pred hhhhCCC
Q 011463 181 EMPNRGC 187 (485)
Q Consensus 181 ~~~~~~~ 187 (485)
+..+.+.
T Consensus 153 ~al~~~p 159 (568)
T 2vsy_A 153 AAVAQGV 159 (568)
T ss_dssp HHHHHTC
T ss_pred HHHhcCC
Confidence 9887753
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.01 E-value=2.5e-08 Score=82.09 Aligned_cols=127 Identities=10% Similarity=-0.033 Sum_probs=109.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+..++..+...|++++|+..|++++ +|++.++..++..+...|++++|.+.++++....+. +...+..+..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~ 80 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH
Confidence 3456778889999999999999886 568889999999999999999999999999988765 78889999999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCC----------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPT----------------PKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
+...|++++|+..|++..+.. +.+ ...+..+..++...|++++|.+.|++..+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999998753 222 2678888899999999999999999998854
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.97 E-value=2.3e-08 Score=95.84 Aligned_cols=154 Identities=10% Similarity=-0.009 Sum_probs=117.6
Q ss_pred cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (485)
.|++++|.+.++++.+..+. +...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47899999999999888765 78899999999999999999999999999875 45688899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc---CCHhHHHHHHHHHHH
Q 011463 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL---GKIYEAKELFKEMET 219 (485)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 219 (485)
+++..+.. +.+...+..+...+... |++++|.+.+++..+.... +...+..+..++... |++++|.+.+++..+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999865 23456777777777777 9999999999999887533 678899999999999 999999999999987
Q ss_pred CC
Q 011463 220 KA 221 (485)
Q Consensus 220 ~~ 221 (485)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=2.7e-09 Score=81.80 Aligned_cols=106 Identities=7% Similarity=-0.046 Sum_probs=90.8
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.+...+..+...+.+.|++++|...|+++...+|. +...|..+..++...|++++|+..|++..+.+ |.++..|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 345667888889999999999999999999998776 78889999999999999999999999998875 4567888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVA 156 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 156 (485)
..++...|++++|...|++..+.. |+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 999999999999999999998865 5553
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=1.1e-08 Score=75.89 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=79.3
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
...+...+..+.+.|++++|++.|+++++..+. +...|..+..++.+.|++++|+..|++..+.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 456777777888888888888888888777655 67777778888888888888888888877764 4457777788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPCVASLN 159 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (485)
+...|++++|.+.|++..+.. |+.....
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~--P~~~~a~ 118 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD--PSNEEAR 118 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--cCCHHHH
Confidence 888888888888888887754 5544333
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=1.3e-08 Score=75.54 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=70.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
......+.+.|++++|++.|++++. ..|.++.+|..+..++.+.|++++|++.++++++.++. +...|..+..++
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 3456667777777777777777772 23556677777777777777777777777777776654 566777777777
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
...|++++|++.|++..+.. |.+...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 77777777777777777653 2344444433
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=4.5e-08 Score=85.62 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=41.6
Q ss_pred CChHHHHHHHHhhhhCCC----C-CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC----CCCC-hhhHHHHHHHHHcc
Q 011463 170 GTMDAAFKIFREMPNRGC----T-PDSYTYGTLINGLCRLGKIYEAKELFKEMETKA----CSPT-VVTYTSLINGLCQS 239 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~ll~~~~~~ 239 (485)
|++++|+..+++..+... . ....++..+..+|.+.|++++|+..|++..... ..+. ...+..+..++...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 555555555554443210 0 013445555666666666666666666554321 1011 12344455555555
Q ss_pred CCHHHHHHHHHHHH
Q 011463 240 KSVEEAMRLFEEMR 253 (485)
Q Consensus 240 ~~~~~a~~~~~~~~ 253 (485)
|++++|...|++..
T Consensus 209 g~~~~A~~~~~~al 222 (307)
T 2ifu_A 209 ADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 66666666666665
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.92 E-value=7.6e-07 Score=77.42 Aligned_cols=178 Identities=8% Similarity=0.018 Sum_probs=120.4
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcC-CcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN-QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
..+...+..++|+++++.++ .-.|.+..+|+....++...| .+++++++++.++..+++ +..+|+.-..++.+.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L----~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIV----RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHH----HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh
Confidence 33444556677888888888 233556677777777777777 488888888888888776 777787777666665
Q ss_pred -C-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011463 99 -H-RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK--------LAFRFYRHMREIGIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 99 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 168 (485)
+ ++++++++++++.+.+ +.+..+|+...-++.+.+.++ ++++.++++.+.. +-+...|+.....+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6 7788888888888765 456777766666655555555 7777777777765 23555666655555444
Q ss_pred CCC-------hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 169 SGT-------MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 169 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
+. ++++++.++++....+. |...|+.+-..+.+.|.
T Consensus 215 -~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 -PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp -TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred -cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 44 56677777776665433 66677666666655554
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.89 E-value=1.1e-08 Score=78.55 Aligned_cols=112 Identities=8% Similarity=-0.024 Sum_probs=92.3
Q ss_pred HHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 011463 33 VIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 112 (485)
..|+.++ ...|.+...+..+...+...|++++|...|+.+....+. +...|..+..++...|++++|+..|++..
T Consensus 8 ~~~~~al----~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 8 GTIAMLN----EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp CSHHHHT----TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHH----cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455555 222445677888889999999999999999999888765 78888999999999999999999999998
Q ss_pred hcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..+ |.++..+..+..++...|++++|...|++..+..
T Consensus 83 ~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 83 VMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 865 4567888889999999999999999999988753
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=1.2e-08 Score=81.24 Aligned_cols=123 Identities=6% Similarity=0.141 Sum_probs=97.7
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH-HhccCC
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG-YGRVHR 100 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 100 (485)
+...|++++|+..|+.++. ..+.+...+..+...+...|++++|...|+++....+. +...+..+..+ +...|+
T Consensus 20 ~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR----ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQ 94 (177)
T ss_dssp CC-----CCCCHHHHHHHH----HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred hhhccCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCC
Confidence 4567889999999998883 33567888889999999999999999999998887665 67788888888 778888
Q ss_pred h--hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 101 P--LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 101 ~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
+ ++|+..|++..+.+ +.+...+..+..++...|++++|...|+++.+..
T Consensus 95 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8 99999999988764 4467788888888999999999999999988854
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.87 E-value=5.2e-08 Score=76.45 Aligned_cols=124 Identities=9% Similarity=-0.007 Sum_probs=61.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.++..+...|++++|+..|+.++. ..+.+..++..++..+...|++++|.+.++++....+. +...+..+..++.
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 344455555555555555555552 12334555555555555555555555555555555433 4455555555555
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHH--HHHHHHHcCCHHHHHHHHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYIT--VLAILVEENQLKLAFRFYRHM 146 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 146 (485)
..|++++|...|++..+.. +.+...+.. ....+...|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555555442 223333322 222244445555555555443
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=3.9e-08 Score=73.88 Aligned_cols=102 Identities=10% Similarity=0.066 Sum_probs=71.4
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
+.+...+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|+..+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 344566777777777777777777777777766544 56677777777777777777777777776653 3456667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..++...|++++|.+.+++..+..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC
Confidence 777777777777777777776643
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=3.9e-06 Score=72.73 Aligned_cols=167 Identities=8% Similarity=0.009 Sum_probs=109.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHCCC-CCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH
Q 011463 303 LNGLCKEGKLQEAVEILDRMKLQGL-KPDA----GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377 (485)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..+++..+.....+ .+.....+++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~--~~~~~~~~~~ 159 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQNLYIEN 159 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--CTTHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--cHHHHHHHHH
Confidence 4556667777777777777665321 1111 1233455566666777777777777776322211 1112233455
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHh----C-CC-ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRN----R-SI-SVDSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLPD-EGTW 445 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~----~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~ 445 (485)
.+...+... ++++|...|+++.+ . +. .....++..+..+|.+.|++++|+..+++..+. +..+. ...+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 666666666 77777777777763 1 11 112347888999999999999999999988753 22222 4577
Q ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHHc
Q 011463 446 SAVMTALWDRR-KMRQAAELLLLELMN 471 (485)
Q Consensus 446 ~~l~~~~~~~g-~~~~A~~~~~~~~~~ 471 (485)
..++.++.+.| ++++|.+.++++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88889999999 569999999998764
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.84 E-value=2.3e-06 Score=74.41 Aligned_cols=176 Identities=8% Similarity=-0.037 Sum_probs=117.3
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHc-C-C
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH-RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE-N-Q 135 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 135 (485)
...+.+..++|+++++.++..++. +..+|+.-..++...| .+++++..++.+...+ +-+..+|+.-..++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 334445556899999999998877 7788888888887788 5899999999998875 45677888777777766 6 7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH--------HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC-
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD--------AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK- 206 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 206 (485)
+++++++++++.+.. +-+...|+.-.-.+... |.++ ++++.++++.+..+. |...|+....++.+.+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 888888888888754 23445555433333333 4444 677777777776544 66777776666666654
Q ss_pred ------HhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 011463 207 ------IYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240 (485)
Q Consensus 207 ------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 240 (485)
++++++.+++..... +-|...|+.+-..+.+.|
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 456666666665542 225555555444444433
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=6.1e-07 Score=77.85 Aligned_cols=208 Identities=9% Similarity=0.103 Sum_probs=138.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHH---hHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011463 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY---TYGTLINGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (485)
.+.++......|+..+...+...+... ++. ++..-. ..+.. .+...+..+...|++++|.+.+++..
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~---~~~---~~~~~~----~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIP---IIH---FYEVLI----YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCC---THH---HHHTTT----SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcC---HHH---HhCCCC----CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 344444333457777766666654322 221 222111 11222 23334667888899999999999887
Q ss_pred HCCC-CCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 011463 219 TKAC-SPTV----VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE-PN----VFTYSSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 219 ~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
+... .|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++.+..+|...|++++|...+++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6422 1221 12334666677778999999999998874222 22 2368888899999999999999999987
Q ss_pred hC-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC----CCCCC-HHhHHHHHHHHHhcCC-HHHHHHHHHH
Q 011463 289 SK-----RHRP-NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ----GLKPD-AGLYGKIISCFCDIGK-YQEAANFLDE 356 (485)
Q Consensus 289 ~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~ 356 (485)
+. +..+ ...++..+...|...|++++|...+++..+. +..+. ..+|..+..+|...|+ +++|...+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 42 1111 2346788888999999999999999887643 21222 5688889999999994 6999999998
Q ss_pred HHH
Q 011463 357 MVL 359 (485)
Q Consensus 357 ~~~ 359 (485)
...
T Consensus 263 Al~ 265 (293)
T 3u3w_A 263 ASF 265 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=1.5e-08 Score=87.31 Aligned_cols=93 Identities=6% Similarity=-0.076 Sum_probs=56.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.++..+...|++++|+..|+.++. ..+.+...|..+..++.+.|++++|...++++.+..+. +...+..+..++.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 445556666666666666666662 22345566666666666666666666666666665543 5556666666666
Q ss_pred ccCChhhHHHHHHHHHhc
Q 011463 97 RVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~ 114 (485)
..|++++|+..|++..+.
T Consensus 84 ~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665543
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=2.3e-07 Score=81.08 Aligned_cols=158 Identities=11% Similarity=0.072 Sum_probs=79.9
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCC-----CHHHHHHHHHHHhccCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHH
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDI-----TEDIFLSICRGYGRVHRPLDAMRVFDKMKEF----GCEP-TPKSYITVLA 128 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 128 (485)
.|...|++++|.+.|.++....... -..++..+...|.+.|++++|+..|++..+. |-+. ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445566666666555544432110 1234555556666666666666666655432 1000 1234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC----CCCCC-HHhHHHHH
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQ---P--CVASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCTPD-SYTYGTLI 198 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~ 198 (485)
+|.. |++++|++.|++..+.... + ...++..+...+... |++++|...|++..+. +..+. ...+..+.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 5555 6666666666665542100 0 023444555555555 6666666666665543 11111 12455555
Q ss_pred HHHHHcCCHhHHHHHHHHHH
Q 011463 199 NGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~ 218 (485)
.++...|++++|...|++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 56666666666666666665
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=6e-07 Score=75.37 Aligned_cols=187 Identities=8% Similarity=-0.067 Sum_probs=113.9
Q ss_pred hcCCcchHHHHHHHHhhcCCCCCHHHHHHH-------HHHHhccCChhhHHHHHHHHHhcCCCCC---------------
Q 011463 62 SANQFRPAEDLLDRVNKEKCDITEDIFLSI-------CRGYGRVHRPLDAMRVFDKMKEFGCEPT--------------- 119 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 119 (485)
..++...|.+.|.++....|. ....|..+ ..++...++..+++..+.+-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 467777777777777777665 56667666 45555555555555555554441 111
Q ss_pred -------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCC--
Q 011463 120 -------PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD-- 190 (485)
Q Consensus 120 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 190 (485)
......+...+...|++++|.++|+.+...+ |+......+...+.+. +++++|+..|+...+.. .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHc-CCHHHHHHHHHHhhccC-CcccH
Confidence 2233445666777777777777777766544 4433333333344455 77888887777555431 111
Q ss_pred HHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT--VVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566677777777888888887777764332132 234555666777777777777777777765
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=1.2e-07 Score=70.87 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=56.0
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+...+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3445555555555666666666666665555433 45555555556666666666666666655542 234555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 011463 129 ILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~ 149 (485)
++...|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 666666666666666665554
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=1.7e-07 Score=69.23 Aligned_cols=99 Identities=8% Similarity=0.178 Sum_probs=62.8
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
...+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 445666666666666666666666666665443 45566666666666666666666666666543 3455566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 011463 130 LVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~ 150 (485)
+...|++++|...++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 666677777777766666543
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.77 E-value=6.3e-08 Score=73.74 Aligned_cols=102 Identities=9% Similarity=0.020 Sum_probs=85.2
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.+...+..+...+...|++++|...|+.+...++. +...|..+..++...|++++|+..|++....+ +.++..+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 334566777888888999999999999999888765 78888888899999999999999999988875 4567788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..++...|++++|...|++..+..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888999999999999999887753
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=5.9e-08 Score=74.28 Aligned_cols=101 Identities=14% Similarity=0.022 Sum_probs=89.6
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..+...+.+.|++++|+..|++++. ..|.++..|..+..++...|++++|++.|+++....|. ++..+..+..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 345677889999999999999999993 34678999999999999999999999999999999876 7889999999
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHh
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPK 121 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 121 (485)
+|.+.|++++|+..|++..+.. |+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9999999999999999999864 5543
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=2.6e-07 Score=79.51 Aligned_cols=195 Identities=13% Similarity=0.037 Sum_probs=126.8
Q ss_pred CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHH
Q 011463 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339 (485)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (485)
+...+..+...+.+.|++++|...|+.++..... +...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556677777888888888888888888876433 67778888888888899999999988888764 456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcc-cccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHH
Q 011463 340 CFCDIGKYQEAANFLDEMVLGGITPNRL-TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418 (485)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (485)
++...|++++|...|++..+.. |+.. .+. ..+..... ...+.. +..........+......+...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~-------~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFG-------DDIPSALR--IAKKKR-WNSIEERRIHQESELHSYLTRL-- 146 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCC-------SHHHHHHH--HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHH-------HHHHHHHH--HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--
Confidence 8999999999999998887642 3321 111 11111111 111111 1222222333344444444332
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhc-CcHHHHHHHHHHHHHcC
Q 011463 419 KKGDIHKSARIVDELVLDGCLPDEGTWSA-VMTALWDR-RKMRQAAELLLLELMNK 472 (485)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~-g~~~~A~~~~~~~~~~~ 472 (485)
..|+.++|++.+++..+. .|+...... +...+.+. +.+++|.++|.++.+..
T Consensus 147 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 147 IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 368999999999888865 565544333 33334444 67888999998887643
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=9.4e-07 Score=76.64 Aligned_cols=171 Identities=8% Similarity=-0.013 Sum_probs=117.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccc
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA------GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (485)
.+...+..+...|++++|...+....+.... .. ..+..+...+...|++++|...+++..+...... ....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~ 153 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQ 153 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTTH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chHH
Confidence 3445566777888888888888777665321 21 2234455667778888999988888876432211 1111
Q ss_pred hhhhHHHHHHHHhcC-ChhHHHHHHHHHHh---CCC-cc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 011463 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRN---RSI-SV--DSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLP 440 (485)
Q Consensus 372 ~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p 440 (485)
...+++.+...+... ++++|...|+++.+ ... .+ ...++..+..+|...|++++|+..+++..+. +...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 234555777777777 88899998888762 211 11 2258889999999999999999999998754 1111
Q ss_pred -ChhhHHHHHHHHHhcCcHHHH-HHHHHHHHHc
Q 011463 441 -DEGTWSAVMTALWDRRKMRQA-AELLLLELMN 471 (485)
Q Consensus 441 -~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 471 (485)
-..++..+..++.+.|++++| ..++++++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 145677888999999999999 7878887753
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=6.9e-07 Score=73.35 Aligned_cols=126 Identities=11% Similarity=-0.049 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011463 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (485)
..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344555555666666666665542 3355555666666666666666666666655543 23455555666666666
Q ss_pred CChHHHHHHHHHHHhCCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 275 GCSSQAMELLQMMISKRHRP---------------NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
|++++|...++.+.+..... ....+..+..++...|++++|...+++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666665542210 1255666777777777888887777777765
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=3.8e-07 Score=71.39 Aligned_cols=128 Identities=11% Similarity=0.026 Sum_probs=79.4
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
..+..++..+...|++++|...|+++....+. +...+..+...+...|++++|+..+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44666667777777777777777777776544 56667777777777777777777777776653 34566666677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCChHHHHHHHHhh
Q 011463 131 VEENQLKLAFRFYRHMREIGIQPCVASL--NVLIKALCKNSGTMDAAFKIFREM 182 (485)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~a~~~~~~~ 182 (485)
...|++++|...+++..+... .+...+ ......+... |++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQ-KAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHH-HHHHHHHHcccch
Confidence 777777777777777666431 122222 1122223343 5666666555543
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=3.8e-07 Score=68.31 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=83.4
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
.....+..++..+...|++++|+..|+++. ...+.+...+..+...+...|++++|.+.++++....+. +...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 88 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAI----KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYT 88 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHH----TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHH
Confidence 344445566777777888888888888877 233456777777788888888888888888887777654 667777
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (485)
.+..++...|++++|...|++..+.. +.+...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77778888888888888888777653 234455555555555444
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=3.1e-06 Score=73.35 Aligned_cols=168 Identities=8% Similarity=0.094 Sum_probs=120.4
Q ss_pred HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CCC--H
Q 011463 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPT-----VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV---EPN--V 261 (485)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 261 (485)
..+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888999999998888776532211 12234455667788899999999988875421 111 4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHh---CCCC-C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC----CCC-C
Q 011463 262 FTYSSLMDGLCKGGCSSQAMELLQMMIS---KRHR-P--NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG----LKP-D 330 (485)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 330 (485)
.+++.+...|...|++++|...++++.+ .... + ...++..+..+|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788888899999999999999998873 2111 1 12578888889999999999999998876531 111 1
Q ss_pred HHhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 011463 331 AGLYGKIISCFCDIGKYQEA-ANFLDEMVL 359 (485)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 359 (485)
..+|..+..+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788889999999999999 777877653
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.73 E-value=1.8e-07 Score=82.75 Aligned_cols=127 Identities=9% Similarity=-0.010 Sum_probs=96.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC---------------HHhHHHHHHHHHhcCCcchHHHHHHHHhhc
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD---------------NSTFSLMISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
+..+...+.+.|++++|+..|++++.. .+.+ ..+|..+..++.+.|++++|+..+++++..
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSW----LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH----TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH----hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445677788889999999999888832 2223 467888888888888888888888888887
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 011463 80 KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA-FRFYRHMR 147 (485)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 147 (485)
.+. +...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.+++ ...|+.|.
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 77788888888888888888888888887764 44667777788888888887777 44555554
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=2.8e-07 Score=68.39 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=54.9
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
..+..+...+.+.|++++|.+.|++.+...+. +...+..+..++.+.|++++|+..|++..+.+ +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34555555555666666666666665555443 45555556666666666666666666655543 33455555555566
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 011463 131 VEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~ 148 (485)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666665554
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=1.6e-07 Score=76.43 Aligned_cols=122 Identities=10% Similarity=-0.033 Sum_probs=71.7
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC-----CCCCHHHHHHHHHHHhc
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK-----CDITEDIFLSICRGYGR 97 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 97 (485)
...|++++|.++++.+. ........++..+...+...|++++|.+.+++....- ......++..+...+..
T Consensus 3 ~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL----AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ----CHHHHHHHHHHHH----TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 45678888888555554 1212345667777777788888888888877766521 01123456666667777
Q ss_pred cCChhhHHHHHHHHHhc----CCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 98 VHRPLDAMRVFDKMKEF----GCE--PTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
.|++++|...+++..+. +-. .....+..+...+...|++++|...+++..+
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777777766543 101 1123455566666666777777666666543
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=4e-07 Score=67.88 Aligned_cols=115 Identities=7% Similarity=-0.011 Sum_probs=65.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+..++..+...|++++|+..|+++.. ..+.+...+..++..+...|++++|.+.++.+....+. +...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIE----LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 34455556666666666666666652 12344555666666666666666666666666655433 45556666666
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666665543 2344555555555555444
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=9.8e-07 Score=65.05 Aligned_cols=93 Identities=9% Similarity=0.120 Sum_probs=45.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.++..+...|++++|++.|+++.. ..+.+..++..++..+...|++++|...++++....+. +...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 344445555555555555555541 11233444455555555555555555555555444332 3444445555555
Q ss_pred ccCChhhHHHHHHHHHhc
Q 011463 97 RVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~ 114 (485)
..|++++|...|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=7.2e-08 Score=80.91 Aligned_cols=189 Identities=12% Similarity=-0.044 Sum_probs=142.5
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHH-------HHHHHhcCCcchHHHHHHHHhhcCCC-----CC-------
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDNSTFSLM-------ISKLVSANQFRPAEDLLDRVNKEKCD-----IT------- 84 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~------- 84 (485)
..++++.|++.|.++. ...|.....|..+ ..++.+.++..++...+.......+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~----~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEIT----NYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHH----HhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 5899999999999999 3345668889888 68888888888888888877763211 01
Q ss_pred --------HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--
Q 011463 85 --------EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-- 154 (485)
Q Consensus 85 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 154 (485)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 2344556778889999999999999998754 444466667778999999999999998654421 111
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCC--CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP--DSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 155 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
...+..+-..+... |++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~L-G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANL-ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22444555555666 99999999999998543314 3446677888899999999999999999886
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.68 E-value=2.7e-08 Score=88.11 Aligned_cols=119 Identities=11% Similarity=0.014 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC--------------HHHHHH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT--------------EDIFLS 90 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ 90 (485)
.+++++|+..|+..... .+.+...+..+...+.+.|++++|...|++++...+... ..++..
T Consensus 126 L~~~~~A~~~~~~a~~~----~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE----KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEECCCCGGGCCHHH----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence 34455555555544411 122455666667777777777777777777766654421 344555
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
+..+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555555554443 23444455555555555555555555555544
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=3.9e-07 Score=72.34 Aligned_cols=121 Identities=7% Similarity=0.087 Sum_probs=78.4
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-HHHcCCH--H
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI-LVEENQL--K 137 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 137 (485)
...|++++|...++......+. +...+..+...|...|++++|+..|++..+.+ +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567777777777777776654 66777777777777788888888777776653 3456666666666 6667776 7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+|...++++.+.. +.+...+..+...+... |++++|...++.+.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQ-ANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhh
Confidence 7777777777654 12344455555555555 7777777777777665
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=2.2e-07 Score=70.68 Aligned_cols=96 Identities=9% Similarity=-0.120 Sum_probs=85.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
...+...+...|++++|+..|+.++. ..|.++..|..+..++...|++++|...|+++...++. +...+..+..+
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCM----LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 34567788999999999999999983 34668889999999999999999999999999999876 77889999999
Q ss_pred HhccCChhhHHHHHHHHHhcC
Q 011463 95 YGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~ 115 (485)
+...|++++|+..|++..+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998753
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=5.4e-07 Score=66.84 Aligned_cols=95 Identities=11% Similarity=0.033 Sum_probs=85.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+......+...|++++|+..|++++. ..|.++..|..+..++.+.|++++|+..++++++.++. +...+..+..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 34567788999999999999999993 34667899999999999999999999999999998776 78899999999
Q ss_pred HhccCChhhHHHHHHHHHhc
Q 011463 95 YGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~ 114 (485)
+...|++++|+..|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=7.2e-07 Score=66.19 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=57.9
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCC--CCC----HhhHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC--EPT----PKSYI 124 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 124 (485)
.++..++..+.+.|++++|++.|+++++..|. +...|..+..+|.+.|++++|++.+++..+.+. .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34555666666666666666666666666544 556666666666666666666666666654320 001 12455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
.+..++...|++++|++.|++.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556666666666666666666653
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.63 E-value=3e-07 Score=68.27 Aligned_cols=106 Identities=10% Similarity=0.067 Sum_probs=86.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--C----HHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--T----EDI 87 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~ 87 (485)
.+..+...+.+.|++++|++.|++++. -.|.++.+|..+..+|...|++++|++.++++++..+.. + ..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 355688899999999999999999993 346678899999999999999999999999998764321 1 246
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 011463 88 FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT 125 (485)
Q Consensus 88 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 125 (485)
+..+..++...|++++|++.|++.++. .|++.....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 777888999999999999999998875 467655443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=7.3e-07 Score=65.00 Aligned_cols=95 Identities=16% Similarity=0.027 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.+..++..+...|++++|.+.++.+....+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444444555555555555555444332 34444444455555555555555555544432 223444444555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 011463 132 EENQLKLAFRFYRHMRE 148 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~ 148 (485)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555544
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=1.4e-06 Score=63.46 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=64.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..++..+...|++++|+..|+.+.. ..+.++..+..++..+...|++++|...++++....+. +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3456666777777777777777762 22445666777777777777777777777777766544 566667777777
Q ss_pred hccCChhhHHHHHHHHHhcC
Q 011463 96 GRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~ 115 (485)
...|++++|...+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 77777777777777776643
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.61 E-value=3.7e-07 Score=73.98 Aligned_cols=117 Identities=11% Similarity=0.007 Sum_probs=61.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH----------------HhHHHHHHHHHhcCCcchHHHHHHHHhhcC
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN----------------STFSLMISKLVSANQFRPAEDLLDRVNKEK 80 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 80 (485)
.+...+...|++++|+..|++++.. .+.++ .++..+..++...|++++|+..++.+....
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDF----FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT----TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH----HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455566666666666666666621 11122 455555555556666666666666555554
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 011463 81 CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139 (485)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (485)
+. +...+..+..++...|++++|+..|++..+.. +.+...+..+..++...++..++
T Consensus 119 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 33 45555555555555666666666665555542 22344444444444444444333
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=4.4e-07 Score=73.84 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=88.3
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc----CC-CCCHhhHHHHHHHHHHcCC
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF----GC-EPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 135 (485)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++..+. +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456788888885554433 22235567777777888888888888888777652 11 1224456667777777777
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC----CCC-CCHHhHHHHHHHHHHc
Q 011463 136 LKLAFRFYRHMREI----GIQP--CVASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCT-PDSYTYGTLINGLCRL 204 (485)
Q Consensus 136 ~~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~ 204 (485)
+++|.+.+++..+. +-.+ ....+..+...+... |++++|...+++..+. +.. ....++..+..++...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 77777777776543 1011 122344444455555 7777777666665532 100 0122345555666666
Q ss_pred CCHhHHHHHHHHHH
Q 011463 205 GKIYEAKELFKEME 218 (485)
Q Consensus 205 ~~~~~a~~~~~~~~ 218 (485)
|++++|.+.+++..
T Consensus 161 g~~~~A~~~~~~al 174 (203)
T 3gw4_A 161 KNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 66666666665544
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=7.5e-05 Score=64.64 Aligned_cols=139 Identities=6% Similarity=-0.002 Sum_probs=82.8
Q ss_pred HhcCCcc-hHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 61 VSANQFR-PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR----------PLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 61 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
.+.|.++ +|+++++.++..+|. +..+|+.--..+...+. +++++.+++.+...+ |-+..+|+.-.-+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556655 678888888777665 56666654444433332 456677777776654 4466666666666
Q ss_pred HHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc
Q 011463 130 LVEEN--QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT-MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204 (485)
Q Consensus 130 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (485)
+...+ .+++++.+++++.+.. +-+...|+.-.-.+... |. ++++++.++.+.+..+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l-~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 66666 3667777777777654 23444555444444444 55 46677777777666443 666666655555444
No 158
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=6.1e-07 Score=68.64 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=72.3
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011463 72 LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151 (485)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (485)
.++++....+. +...+..+...+...|++++|+..|++....+ +.+...|..+..++...|++++|...|++.....
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 34555544332 45566667777777777777777777777654 4466677777777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+.+...+..+...+... |++++|...|+...+.
T Consensus 86 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQX-GELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 22344455555555555 7777777777777664
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.58 E-value=1.3e-06 Score=68.31 Aligned_cols=101 Identities=10% Similarity=-0.006 Sum_probs=78.8
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 127 (485)
.+...+..+...+...|++++|++.|++++...+. +...+..+..+|.+.|++++|+..|++..+.+ +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34567777788888888888888888888877655 67778888888888888888888888887764 44577788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 011463 128 AILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
.++...|++++|...|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888888888888888877653
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=1.4e-06 Score=65.69 Aligned_cols=101 Identities=10% Similarity=0.063 Sum_probs=78.0
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
+.++..+..+...+...|++++|...|+.+....+. +...+..+..++...|++++|+..+++..+.+ +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 456777778888888888888888888888777654 67777888888888888888888888887764 4456777778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 011463 127 LAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888877764
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.58 E-value=0.00014 Score=63.03 Aligned_cols=174 Identities=7% Similarity=-0.026 Sum_probs=127.6
Q ss_pred HHccCCHH-HHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCC----------cchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 22 IRAEKDVN-KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ----------FRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 22 ~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
..+.|++. +|+.+++.++ ...|.+..+|+.-..++...+. +++++.+++.++..+|+ +..+|+.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L----~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~h 113 (331)
T 3dss_A 39 KRQAGELDESVLELTSQIL----GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 113 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHH----HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 34556555 7999999999 4445667778777776665554 68899999999999887 8899998
Q ss_pred HHHHHhccCC--hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011463 91 ICRGYGRVHR--PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ-LKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167 (485)
Q Consensus 91 l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 167 (485)
-..++.+.|+ +++++.+++++.+.+ +.|..+|+.-.-++...|. ++++++.+.++++.. +-+...|+.....+..
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 8888888884 899999999999886 5688899888888888888 699999999999876 3456666655444433
Q ss_pred cC-------------CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 168 NS-------------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 168 ~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
.. +.++++++.+.......+. |...|+-+-..+.+
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGA 239 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHS
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 20 2356677777776665433 66666654444443
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.57 E-value=5.1e-07 Score=66.31 Aligned_cols=94 Identities=9% Similarity=-0.016 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
+..+...+.+.|++++|...|+++++..+. +...|..+..++...|++++|+..|++..+.+ |.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344445555555555665555555555443 45555555555555566666665555555543 2344555555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 011463 133 ENQLKLAFRFYRHMRE 148 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~ 148 (485)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555666555555554
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.57 E-value=5.4e-08 Score=79.03 Aligned_cols=123 Identities=9% Similarity=-0.071 Sum_probs=72.8
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC---------------HH
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT---------------ED 86 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~ 86 (485)
....|+++++.+.|+.... ........+..+...+...|++++|.+.|+++....+... ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDE----EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp --------CCCSGGGCCHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHH----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 4456666666666654431 1122345567777777888888888888888777544311 15
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
++..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 56666666666777777777777666653 345566666666666677777777776666654
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=6.1e-07 Score=64.74 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=42.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC-CCHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFLSICRG 94 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 94 (485)
..++..+...|++++|+..|+++.. ..+.+...+..+...+...|++++|.+.++++.+..+. .+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQ----LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3344444445555555555554441 11233444444444444455555555555444443221 023444444444
Q ss_pred Hhcc-CChhhHHHHHHHHHh
Q 011463 95 YGRV-HRPLDAMRVFDKMKE 113 (485)
Q Consensus 95 ~~~~-~~~~~a~~~~~~~~~ 113 (485)
+... |++++|.+.+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 4444 444444444444444
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.56 E-value=7e-07 Score=69.84 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=87.0
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..+...+...|++++|+..|++++. ..+.+...|..+..++...|++++|+..|++++...+. +...|..+..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS----IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 355678889999999999999999993 33567889999999999999999999999999999866 7889999999
Q ss_pred HHhccCChhhHHHHHHHHHhcC
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
++...|++++|+..|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999998864
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.56 E-value=3.3e-07 Score=67.37 Aligned_cols=96 Identities=6% Similarity=-0.052 Sum_probs=85.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
....+...+.+.|++++|+..|++++. ..|.+...|..+..++...|++++|+..|+++.+..+. +...+..+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 455677889999999999999999993 34668899999999999999999999999999999876 7889999999
Q ss_pred HHhccCChhhHHHHHHHHHhc
Q 011463 94 GYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~ 114 (485)
++...|++++|+..|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.3e-06 Score=66.71 Aligned_cols=112 Identities=9% Similarity=-0.062 Sum_probs=76.7
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC---HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT---EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
+.+...+..+...+...|++++|.+.|++.....+. + ...+..+...+...|++++|+..+++..+.. +.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 445667777777777777777777777777766432 2 5667777777777788888887777776653 3456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
..+..++...|++++|...|++..+.. |+.......+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 139 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHH
Confidence 777777777888888888887777644 4433333333
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=2.6e-06 Score=63.34 Aligned_cols=94 Identities=10% Similarity=0.015 Sum_probs=57.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH---HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC---HHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN---STFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT---EDIFL 89 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~ 89 (485)
..++..+...|++++|+..|+.++.. .|.++ ..+..+..++...|++++|...|+.+....+. + ...+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~ 80 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHH
Confidence 34455666667777777777766621 12222 45566666666677777777777666665543 2 45556
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhc
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+..++...|++++|...|+++.+.
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666654
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4.4e-06 Score=63.75 Aligned_cols=95 Identities=8% Similarity=-0.002 Sum_probs=62.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
.+..+...+...|++++|++.|+.+. . . .|+ ...+..+...+...|++++|.+.++.+....+. +...+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~---~-~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL---G-L-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH---T-S-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---H-H-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 34445666667777777777777776 1 1 233 556666677777777777777777777666543 566666
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhc
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6777777777777777777777664
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=3.3e-06 Score=62.75 Aligned_cols=102 Identities=8% Similarity=-0.056 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH---HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC---HhhHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITE---DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT---PKSYITV 126 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 126 (485)
+..++..+...|++++|.+.|+.+....+. +. ..+..+..++.+.|++++|+..|++..+.. +.+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 455677888899999999999998887654 33 577788888999999999999999988764 333 5667888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASL 158 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (485)
..++...|++++|...|+++.+.. |+....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 112 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY--PGSDAA 112 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTSHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCChHH
Confidence 888889999999999999888754 554433
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.49 E-value=9.7e-07 Score=66.54 Aligned_cols=98 Identities=6% Similarity=-0.089 Sum_probs=87.1
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
...+..+...+...|++++|+..|+.++. ..+.++..+..+..++...|++++|...++.+....+. +...+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh----hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 34456778899999999999999999983 33567889999999999999999999999999998766 78899999
Q ss_pred HHHHhccCChhhHHHHHHHHHhc
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
..++...|++++|+..|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999998775
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.49 E-value=2.1e-06 Score=63.87 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=54.3
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCC--CCC----HhhHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC--EPT----PKSYI 124 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 124 (485)
..+..++..+...|++++|...++++....+. +...+..+...+...|++++|...+++...... +++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555555556666666666666665555433 455555555666666666666666665554320 011 44555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
.+..++...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555666666666666666666553
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.45 E-value=8e-07 Score=66.21 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=90.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC--CC----HHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD--IT----EDIF 88 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~ 88 (485)
+..++..+...|++++|+..|+.+.. ..+.++..+..++..+...|++++|...++.+....+. ++ ..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKE----LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45577889999999999999999983 23567888999999999999999999999999887542 12 6788
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
..+...+...|++++|.+.|++..+.. |+......+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 889999999999999999999998864 5666655554443
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.44 E-value=3.2e-07 Score=67.07 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHhhhhhcCC--CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChh
Q 011463 25 EKDVNKALVIFDSATAEYANG--FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (485)
.|++++|+..|++++ ..+ .|.+..++..+..++...|++++|++.|+++.+..+. +...+..+..++...|+++
T Consensus 3 ~g~~~~A~~~~~~al---~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI---ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHH---SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHH---HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHH
Confidence 566777777777776 221 1334556666677777777777777777777766554 5666666667777777777
Q ss_pred hHHHHHHHHHhc
Q 011463 103 DAMRVFDKMKEF 114 (485)
Q Consensus 103 ~a~~~~~~~~~~ 114 (485)
+|+..|++..+.
T Consensus 79 ~A~~~~~~al~~ 90 (117)
T 3k9i_A 79 QGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777766654
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.9e-05 Score=72.71 Aligned_cols=163 Identities=12% Similarity=0.023 Sum_probs=83.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH---------------HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDN---------------STFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 82 (485)
-+..+...|++++|++.|..++...+. ..+. .++..++..|...|++++|.+.+..+......
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSS--QSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCC--SSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--cchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888742111 1110 13556667777777777777777666543211
Q ss_pred CCH-----HHHHHHHHHHhccCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 011463 83 ITE-----DIFLSICRGYGRVHRPLDAMRVFDKMKEF----GCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREIG-- 150 (485)
Q Consensus 83 ~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 150 (485)
.+. .+.+.+...+...|+++.|..+++..... +..+ -..++..+...+...|++++|..+++++...-
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 111 12222333334456666666666655432 1111 13345556666666666666666666554321
Q ss_pred C--CC-CHHHHHHHHHHHHhcCCChHHHHHHHHhhh
Q 011463 151 I--QP-CVASLNVLIKALCKNSGTMDAAFKIFREMP 183 (485)
Q Consensus 151 ~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 183 (485)
. .+ ....+......+... |++++|..+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKL-RNLAKSKASLTAAR 202 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 0 01 112333344444444 55555555554443
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=4.7e-06 Score=59.89 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=58.8
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC--CHHhHHHHH
Q 011463 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP--DAGLYGKII 338 (485)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 338 (485)
...+..+...+...|++++|...++++.+... .+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 34445555556666666666666666655432 245555566666666666666666666666553 23 455666666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHC
Q 011463 339 SCFCDI-GKYQEAANFLDEMVLG 360 (485)
Q Consensus 339 ~~~~~~-~~~~~a~~~~~~~~~~ 360 (485)
.++... |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666676666666653
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=5.4e-07 Score=83.73 Aligned_cols=118 Identities=8% Similarity=-0.010 Sum_probs=89.2
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
.+.+.|++++|++.|+++++ ..+.+..+|..+..++.+.|++++|.+.++++.+..+. +...+..+..+|...|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 36778899999999998883 23556888888889999999999999999998888765 67888888888888999
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHH--HHHcCCHHHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAI--LVEENQLKLAFRFYR 144 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 144 (485)
+++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998888764 3344555555555 777788888888877
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=4.2e-05 Score=70.38 Aligned_cols=167 Identities=9% Similarity=-0.044 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHHHhcCCChHHHHHHHHhhhhC----CCCC-CHHh
Q 011463 123 YITVLAILVEENQLKLAFRFYRHMREIG-IQPC---VASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCTP-DSYT 193 (485)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 193 (485)
+..+...|...|++++|.+.+..+...- ..++ .......+..+....|+++.+..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777777665421 0011 1223334444444457888888887776542 2222 2456
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC--CCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--Hh
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETK--ACS---PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK----GVEPN--VF 262 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~ 262 (485)
+..+...+...|++++|..++++.... +.. .....+..++..|...|++++|...+++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778888899999999999988887543 111 12356778888899999999999998877542 11111 24
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011463 263 TYSSLMDGLCKGGCSSQAMELLQMMIS 289 (485)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (485)
.+..+...+...|++++|...|....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666777888999999888877754
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=5.9e-06 Score=64.29 Aligned_cols=99 Identities=10% Similarity=0.038 Sum_probs=59.0
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhc--------CC---------CCCHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKE--------KC---------DITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
..+...+..+.+.|++++|+..|..++.. .+ +.+...+..+..+|.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34455555555666666666666555543 00 01234566666666667777777777766666
Q ss_pred cCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
.+ +.+...|..+..++...|++++|...|++..+..
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 53 3456666666666777777777777777666643
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.34 E-value=3.4e-06 Score=65.70 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=84.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcC----C----------CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYAN----G----------FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 80 (485)
+......+.+.|++++|+..|+.++..... . .+.+...|..+..++.+.|++++|+..++.++..+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 345678899999999999999999842000 0 12334688999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 011463 81 CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
+. +...|..+..+|...|++++|...|++..+..
T Consensus 94 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Cc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 66 78899999999999999999999999999864
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.34 E-value=3.6e-06 Score=77.88 Aligned_cols=120 Identities=8% Similarity=-0.004 Sum_probs=79.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC---------------HHhHHHHHHHHHhcCCcchHHHHHHHHhhc
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD---------------NSTFSLMISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
+......+.+.|++++|+..|++++.. .+.+ ..+|..+..++.+.|++++|+..+++++..
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 445667778888888888888888732 1222 456777777777777777777777777776
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 011463 80 KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140 (485)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (485)
.+. +...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 654 66677777777777777777777777776653 334556666666666666665554
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=3.1e-06 Score=75.69 Aligned_cols=123 Identities=8% Similarity=-0.034 Sum_probs=78.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcC------------CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYAN------------GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 82 (485)
+..+...+.+.|++++|+..|++++..... ..+.+..+|..+..++.+.|++++|++.++++++..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 445677788888999999998888831000 11223456666677777777777777777777766544
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 011463 83 ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139 (485)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (485)
+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777777777766653 23455555555555555554444
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.30 E-value=1.7e-06 Score=63.18 Aligned_cols=88 Identities=6% Similarity=-0.049 Sum_probs=69.5
Q ss_pred hcCCcchHHHHHHHHhhcCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 011463 62 SANQFRPAEDLLDRVNKEKC--DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (485)
..|++++|+..|+++++.++ +.+...+..+..+|...|++++|+..|++..+.. |.+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46889999999999988741 1255778888899999999999999999998875 45678888899999999999999
Q ss_pred HHHHHHHHHcC
Q 011463 140 FRFYRHMREIG 150 (485)
Q Consensus 140 ~~~~~~~~~~~ 150 (485)
...+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999988754
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.29 E-value=4.3e-06 Score=63.24 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCC----CH-----HhHHHHHHHHHhcCCcchHHHHHHHHhhc-------
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRH----DN-----STFSLMISKLVSANQFRPAEDLLDRVNKE------- 79 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 79 (485)
......+...|++++|+..|++++.-.. ..+. +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p-~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISH-TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCC-CCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3455667778888888888888774311 1100 11 15555566666666666666666655554
Q ss_pred CCCCCHHHH----HHHHHHHhccCChhhHHHHHHHHHh
Q 011463 80 KCDITEDIF----LSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 80 ~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
++. +...| .....++...|++++|+..|++..+
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 332 33444 4455555555555555555555443
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=2.9e-06 Score=78.82 Aligned_cols=123 Identities=12% Similarity=0.072 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
+..+...+.+.|++++|.+.++++.+..+. +...+..+..+|.+.|++++|++.+++..+.. +.+..++..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344455677899999999999999998765 78899999999999999999999999999875 4568889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH--HHhcCCChHHHHHHHH
Q 011463 133 ENQLKLAFRFYRHMREIGIQPC-VASLNVLIKA--LCKNSGTMDAAFKIFR 180 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~--~~~~~~~~~~a~~~~~ 180 (485)
.|++++|.+.|++..+.. |+ ...+..+... +.+. |++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~-g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQ-KAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHH-HHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH-HHHHHHhcccc
Confidence 999999999999998864 33 2233333333 5666 89999999988
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=1e-05 Score=62.71 Aligned_cols=65 Identities=12% Similarity=-0.102 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 407 SLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLP-DEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 407 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
...+..+..++...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.++++++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456777888899999999999999988754 1111 1345667788889999999999999998875
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=2.1e-06 Score=76.01 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=53.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..+...+.+.|++++|+..|++++.. .|+... +...|+++++...+ ....|..+..+|
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAY-----MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHH-----SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-----hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 34566677788888888888887721 222210 01111111111111 011444455555
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554432 23444555555555555555555555555543
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.25 E-value=1.5e-05 Score=60.32 Aligned_cols=98 Identities=10% Similarity=0.038 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC------CH-----HHHHHHHHHHhccCChhhHHHHHHHHHhc-----
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDI------TE-----DIFLSICRGYGRVHRPLDAMRVFDKMKEF----- 114 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 114 (485)
..+......+.+.|++++|++.|+++++..+.. +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 456677888899999999999999999886551 22 27888888888888888888888888775
Q ss_pred --CCCCCHhhH----HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 115 --GCEPTPKSY----ITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 115 --~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
+ |.+...| .....++...|++++|+..|++..+.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 2345677 77888888888888888888887763
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=7.1e-06 Score=63.61 Aligned_cols=134 Identities=8% Similarity=-0.026 Sum_probs=72.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC-CC----HHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-IT----EDI 87 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~ 87 (485)
+..+...+...|++++|+..++++.........+. ..++..+...+...|++++|.+.+++....... .+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34556666677777777777776663211110010 135566666667777777777777665543211 01 234
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhc----CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 88 FLSICRGYGRVHRPLDAMRVFDKMKEF----GCE-PTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 88 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
+..+...+...|++++|...+++..+. +.+ .....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555566666666666666666665432 100 1123445555556666666666666665543
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.23 E-value=8.6e-06 Score=75.19 Aligned_cols=128 Identities=13% Similarity=0.047 Sum_probs=88.6
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHHHhhc-----CCC-C-CHHHHH
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKE-----KCD-I-TEDIFL 89 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 89 (485)
.+..+|++++|+.++++++........++ ..+++.++.+|..+|++++|..++++++.. |+. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678899999988888876544444333 346888888888889998888888876543 222 1 234677
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhc-----CCC-C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEF-----GCE-P-TPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
.|...|...|++++|+.++++..+. |.. | ...+...+..++...+.+++|+.+|.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888877542 311 1 233445566667777788888888887765
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=2.7e-05 Score=72.04 Aligned_cols=88 Identities=7% Similarity=-0.041 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH
Q 011463 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200 (485)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (485)
..|..+..++.+.|++++|+..++++++.. +.+...+..+..++... |++++|...|+++.+.... +...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 455555556666666666666666655543 12344444445555554 6666666666666554322 44455555555
Q ss_pred HHHcCCHhHHH
Q 011463 201 LCRLGKIYEAK 211 (485)
Q Consensus 201 ~~~~~~~~~a~ 211 (485)
+.+.++.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555555544
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.12 E-value=1.7e-05 Score=70.98 Aligned_cols=97 Identities=10% Similarity=-0.007 Sum_probs=58.7
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhc----------------CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKE----------------KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
..+..+...+.+.|++++|++.|+++++. .+. +..+|..+..+|.+.|++++|+..+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-ALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34677788888889999999888888762 111 2344555555555556666666655555554
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
. +.+...+..+..++...|++++|...|++..+.
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 234455555555555555555555555555553
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=0.00047 Score=65.26 Aligned_cols=175 Identities=6% Similarity=-0.008 Sum_probs=124.9
Q ss_pred HhcCCc-chHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 61 VSANQF-RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR----------PLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 61 ~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
.+.|.+ ++|++.++.++..+++ +..+|+.-..++...|+ ++++++.++.+.+.+ +-+..+|..-.-+
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344544 5778999999988876 77788877777777766 888999999888875 4577788888888
Q ss_pred HHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-ChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc--
Q 011463 130 LVEEN--QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG-TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL-- 204 (485)
Q Consensus 130 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 204 (485)
+.+.+ +++++++.++++.+.. +-+...|+.-...+... | .++++++.++++.+..+. +...|+....++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcc
Confidence 88888 6689999999988865 23566666666555565 6 788888888888887544 778888777776663
Q ss_pred ------------CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 011463 205 ------------GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241 (485)
Q Consensus 205 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 241 (485)
+.++++++.+++..... +-+...|...-..+.+.++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666666543 2255566665555555554
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=7e-05 Score=70.92 Aligned_cols=177 Identities=7% Similarity=-0.056 Sum_probs=141.7
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCC----------cchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ----------FRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
....++|++.++.++ ...|.+..+|+....++...|+ ++++++.++.+.+.+++ +..+|..-..+
T Consensus 42 ~~~~eeal~~~~~~l----~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQIL----GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344567899999999 3446677889888888888887 89999999999999887 89999999999
Q ss_pred HhccC--ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 011463 95 YGRVH--RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN-QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN--- 168 (485)
Q Consensus 95 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 168 (485)
+.+.| +++++++.++++.+.+ +.+..+|+....++.+.| .++++++.++++++.. +-+...|+.....+...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccc
Confidence 99999 6699999999999986 568889999888888888 8999999999998865 34566676665555441
Q ss_pred ----------CCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhH
Q 011463 169 ----------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209 (485)
Q Consensus 169 ----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (485)
.+.++++.+.++.+....+. +...|..+-..+.+.++.++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 04468899999888877543 77888888777777776444
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.07 E-value=3.2e-05 Score=55.99 Aligned_cols=83 Identities=8% Similarity=-0.019 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 011463 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 468 (485)
+.+...|++..+..+. +...+..+..+|...|++++|+..|++.++.. +.+...|..+..++...|++++|...++++
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577888888887665 77889999999999999999999999999863 445667888999999999999999999999
Q ss_pred HHcCC
Q 011463 469 LMNKC 473 (485)
Q Consensus 469 ~~~~~ 473 (485)
++...
T Consensus 80 l~~~~ 84 (115)
T 2kat_A 80 LAAAQ 84 (115)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 88643
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.06 E-value=7.5e-05 Score=56.02 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=79.9
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCC
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR----VHR 100 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 100 (485)
.+|+++|++.|+++. ..+ .++. . +...|...+.+++|.++|++..+.+ +...+..+...|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa---~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKAC---ELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHH---HTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC
T ss_pred ccCHHHHHHHHHHHH---cCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCcc
Confidence 356778888888877 334 2222 2 6666666677777888888877763 56677777777776 677
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 150 (485)
+++|+.+|++..+.| ++..+..+...|.. .++.++|.++|++..+.|
T Consensus 77 ~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 77 LRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888888877764 66677777777777 777888888887777765
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.05 E-value=7.1e-06 Score=61.90 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=66.9
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcc----------hHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR----------PAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
..+.+.+++|++.++.++ .-.|.++..|..+..++...++++ +|+..|+++++.++. +..+|..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai----~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTY----KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 456778889999999888 234667888888888888887765 777777777777665 66777777
Q ss_pred HHHHhccC-----------ChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 92 CRGYGRVH-----------RPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 92 ~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
..+|...| ++++|++.|++..+. .|+...|
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 77776654 566666666666554 3444333
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.02 E-value=1.7e-05 Score=70.13 Aligned_cols=96 Identities=18% Similarity=0.072 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH-
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING- 200 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 200 (485)
.|..+..++.+.|++++|...+++.++.. +.+...+..+..++... |++++|...|+++.+.... +...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYAPD-DKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 78889999999999999999999999865 23566777777788777 9999999999999876432 45566666655
Q ss_pred HHHcCCHhHHHHHHHHHHHC
Q 011463 201 LCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~ 220 (485)
....+..+.+...|..|...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 33456778888899988765
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=4e-06 Score=60.30 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=51.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC------HHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT------EDIFL 89 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~ 89 (485)
..+...+...|++++|++.|++++. ..|.++..+..+..++...|++++|++.++++....+. + ...+.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 82 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLIT----AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHH
Confidence 3455566666666666666666662 22445666666666666666666666666666665433 2 34444
Q ss_pred HHHHHHhccCChhhHHHHHH
Q 011463 90 SICRGYGRVHRPLDAMRVFD 109 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~ 109 (485)
.+..++...|+++.|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 55555555555555544443
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.97 E-value=0.00047 Score=51.61 Aligned_cols=111 Identities=10% Similarity=-0.062 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHH
Q 011463 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK----EGKLQEA 315 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 315 (485)
+++++|...|++..+.| .++.. +...|...+..++|.++|++..+.+ ++.....+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666665 22222 5555555566666777777766653 45566666666665 6677777
Q ss_pred HHHHHHHhHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011463 316 VEILDRMKLQGLKPDAGLYGKIISCFCD----IGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 361 (485)
...|++..+.| +...+..+...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776654 45566666666666 667777777777776655
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.97 E-value=6.7e-05 Score=51.36 Aligned_cols=81 Identities=6% Similarity=0.082 Sum_probs=50.8
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
...+..+...+...|++++|...+++.....+. +...+..+..++.+.|++++|...|++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455666666677777777777777777666543 55666666667777777777777777766653 3345555555544
Q ss_pred HHH
Q 011463 130 LVE 132 (485)
Q Consensus 130 ~~~ 132 (485)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=9.9e-05 Score=53.29 Aligned_cols=79 Identities=6% Similarity=-0.120 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 011463 30 KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109 (485)
Q Consensus 30 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 109 (485)
+|+..|+.++ ...|.++..+..+...+...|++++|...|+++....+. +...+..+..++...|++++|...|+
T Consensus 3 ~a~~~~~~al----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAML----AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHH----TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHH----HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555 222344555555555555555555555555555555433 44455555555555555555555555
Q ss_pred HHHh
Q 011463 110 KMKE 113 (485)
Q Consensus 110 ~~~~ 113 (485)
+..+
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.96 E-value=2.9e-05 Score=58.59 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=82.5
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh----------hhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP----------LDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
.+.+.+++|.+.++...+.++. +...|..+..++...+++ ++|+..|++.++.+ |.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4567789999999999999876 889999999998888775 49999999999875 44678899999999
Q ss_pred HHcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011463 131 VEEN-----------QLKLAFRFYRHMREIGIQPCVASLNVLIKA 164 (485)
Q Consensus 131 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 164 (485)
...| ++++|.+.|++.++.. |+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 8774 8999999999999854 877766666554
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=3.3e-05 Score=55.32 Aligned_cols=65 Identities=8% Similarity=0.018 Sum_probs=46.0
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
+...+..+...+...|++++|.+.|+++....+. +...+..+..++.+.|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777776554 5666777777777777777777777777664
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.86 E-value=9.1e-05 Score=50.66 Aligned_cols=80 Identities=5% Similarity=0.012 Sum_probs=66.6
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..+...+...|++++|+..|++++. ..+.+...+..+..++...|++++|...++++....+. +...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 455678889999999999999999983 23567888999999999999999999999999998765 6777777777
Q ss_pred HHhcc
Q 011463 94 GYGRV 98 (485)
Q Consensus 94 ~~~~~ 98 (485)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76544
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.84 E-value=5.8e-05 Score=69.68 Aligned_cols=126 Identities=11% Similarity=0.032 Sum_probs=93.6
Q ss_pred HHHccCCHHHHHHHHHHHHhC---CCCC----CHhhHHHHHHHHHcCCChHHHHHHHHHHHhC-----CC-CC-ChhhHH
Q 011463 235 GLCQSKSVEEAMRLFEEMRSK---GVEP----NVFTYSSLMDGLCKGGCSSQAMELLQMMISK-----RH-RP-NIVTYS 300 (485)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 300 (485)
.+...|++++|+.++++..+. -+.+ ...+++.+..+|...|++++|..++++.+.. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887643 1111 2467888999999999999999999887653 22 12 245688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHC-----CC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 301 TLLNGLCKEGKLQEAVEILDRMKLQ-----GL-KP-DAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
.|...|...|++++|+.++++..+. |. +| ...+...+..++...+.+++|..++.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999886542 31 22 2335566777888899999999999998763
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.75 E-value=0.00013 Score=51.14 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=46.9
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
|.++..+..+...+...|++++|++.|+++++.++. +...|..+..+|...|++++|+..|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445667777777777777777777777777777655 556677777777777777777777777654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.71 E-value=0.0002 Score=50.07 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=52.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
+...+..+..+|...|++++|++.|+++++.. +.+...|..+..+|...|++++|++.++++++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56677788888888888888888888888763 3345567778888888888888888888888654
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.38 E-value=0.0027 Score=43.37 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=55.1
Q ss_pred CCCHHhHHHHHHHHHhcCC---cchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 011463 47 RHDNSTFSLMISKLVSANQ---FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
+.++..+..+..++...++ .++|..++++.+..++. ++.....+...+.+.|++++|+..|+++.+.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5677888888888765554 68888888888888776 78888888888888899999999888888764
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.37 E-value=0.00063 Score=46.52 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 406 DSLTYSSLITCFCKKGD---IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
++..+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44555555555543333 466666666666542 223344444555566666666666666666665544
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.33 E-value=0.0055 Score=53.35 Aligned_cols=72 Identities=13% Similarity=-0.024 Sum_probs=61.2
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
.++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++++..++.+++.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 367788888777777899999999999999874 787777778888899999999999999999988766544
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.32 E-value=0.00079 Score=61.08 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHHHhhc-----CCC-C-CHHHHHHHHH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKE-----KCD-I-TEDIFLSICR 93 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~ 93 (485)
.|++++|+.++++++........|+ ..+++.++.+|..+|++++|..++++++.. |+. | ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3455555555555543322222222 224555555555555555555555544332 111 1 1123444444
Q ss_pred HHhccCChhhHHHHHHHH
Q 011463 94 GYGRVHRPLDAMRVFDKM 111 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~ 111 (485)
.|...|++++|+.++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 444444444444444444
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.28 E-value=0.0016 Score=45.16 Aligned_cols=83 Identities=11% Similarity=0.134 Sum_probs=60.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHH-hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNS-TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..+..+...|++++|+..|+.++. ..+.++. .+..+..++...|++++|.+.|+++....+. +...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~----- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ----TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH-----
Confidence 456778889999999999999883 3355677 8888899999999999999999999888765 3333321
Q ss_pred hccCChhhHHHHHHHHH
Q 011463 96 GRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~ 112 (485)
+.+.++...|++..
T Consensus 75 ---~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDM 88 (99)
T ss_dssp ---HHHHHHHHHHCCTT
T ss_pred ---HHHHHHHHHHHHHh
Confidence 34455555555443
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.23 E-value=0.00072 Score=61.47 Aligned_cols=92 Identities=9% Similarity=0.007 Sum_probs=51.3
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcC---CCC----CHHHHHHHHHHHhccCChhhHHHHHHHHHhc-----C-CCC-CHhh
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEK---CDI----TEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-----G-CEP-TPKS 122 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~ 122 (485)
+..+..+|++++|++++++++... ..+ ...+++.++.+|...|++++|+.++++.++. | -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334445666666666666665432 111 1235566666666666666666666665431 1 011 2344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 123 YITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
++.+...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666667777777777776666553
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.01 Score=51.70 Aligned_cols=48 Identities=8% Similarity=-0.021 Sum_probs=25.5
Q ss_pred CCCHHhHHHHHHHHH--hcC---CcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 47 RHDNSTFSLMISKLV--SAN---QFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
|.++.+|...+++.. ..+ +..+|.++|+++++..|. ....+..+..+|
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 455666666554432 222 235677777777776554 444444444333
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.05 E-value=0.0044 Score=42.83 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=47.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITED-IFLSICRGYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
.+..+...|++++|.+.++.+.+..+. +.. .+..+..++...|++++|++.|++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456677888888888888888887655 666 78888888888888888888888888764
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.97 E-value=0.0025 Score=57.80 Aligned_cols=85 Identities=7% Similarity=0.010 Sum_probs=65.9
Q ss_pred ChhHHHHHHHHHHh---C--CCc-c-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-hhhHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRN---R--SIS-V-DSLTYSSLITCFCKKGDIHKSARIVDELVLD-----G-CLPD-EGTWSAVMTAL 452 (485)
Q Consensus 387 ~~~~a~~~~~~~~~---~--~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~ 452 (485)
++++|..++++.+. . |.. | ...+++.+..+|...|++++|+.++++.++. | -.|+ ..+++.+...|
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 67888888887764 1 211 1 2467889999999999999999999998743 2 1233 34688899999
Q ss_pred HhcCcHHHHHHHHHHHHHc
Q 011463 453 WDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~ 471 (485)
...|++++|..+++++++-
T Consensus 393 ~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHH
Confidence 9999999999999998763
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.90 E-value=0.0077 Score=44.87 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCcHHHHH
Q 011463 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG---DIHKSARIVDELVLDGCLP--DEGTWSAVMTALWDRRKMRQAA 462 (485)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 462 (485)
...+.+.|.+....+. ++..+.-.+..++++.+ +.++++.++++..+.+ .| ....+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3556667777776665 47778788888999988 6679999999999874 35 2445566778899999999999
Q ss_pred HHHHHHHHcCCCcc
Q 011463 463 ELLLLELMNKCVEA 476 (485)
Q Consensus 463 ~~~~~~~~~~~~~~ 476 (485)
++++++++..+...
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999776543
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.90 E-value=3.8e-07 Score=80.50 Aligned_cols=259 Identities=14% Similarity=0.081 Sum_probs=117.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
+.++.+....++..+|++.|=++. |+..|..++.+..+.|.+++-+..+..+.+..- ++.+=+.|+.+|
T Consensus 58 s~LgkAqL~~~~v~eAIdsyIkA~---------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 58 SQLAKAQLQKGMVKEAIDSYIKAD---------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp SSHHHHTTTSSSCTTTTTSSCCCS---------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred HHHHHHHHccCchHHHHHHHHhCC---------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 344444555555555444442222 333344455555555555555555544433311 223333455555
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
++.++..+-.+.+ . .|+..-...+..-|...|.++.|.-+|..+.. |..+...+.+. |++..|
T Consensus 127 Ak~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L-~~yq~A 189 (624)
T 3lvg_A 127 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHL-GEYQAA 189 (624)
T ss_dssp HTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSC-SGGGSS
T ss_pred HhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHH-HHHHHH
Confidence 5555543322221 1 23444444444445555555444444432211 11111112222 333333
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
.+.- .+ .-++.+|..+-.+|...+.+.-|.-.--.+.-. ......++..|-..|.+++.+.+++.....
T Consensus 190 VdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 2211 11 125567777777777777776665443333321 112233455566667777777777666533
Q ss_pred CCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCC------CChhhHHHHHHHHHhcCCHHHH
Q 011463 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-RHR------PNIVTYSTLLNGLCKEGKLQEA 315 (485)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a 315 (485)
. +.....|+.|.-.|++- ++++..+.++..-.+ +++ -....|.-++-.|..-.+++.|
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 2 34556666666666654 244444444432221 111 0233455555555555555544
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.79 E-value=0.0079 Score=42.12 Aligned_cols=58 Identities=10% Similarity=-0.002 Sum_probs=27.6
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCC------CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRS------ISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
.+...+... ++..|...|+.+.+.. ..+...++..+..++.+.|++++|...++++.+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 333334443 5555555555544320 011334455555555555555555555555554
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.78 E-value=0.0095 Score=41.70 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=48.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCC---CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANG---FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 82 (485)
.|..++..+...|++..|..-|+.+....... ..+....+..+..++.+.|+++.|...++++.+..|.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 45677888888888888888888877532221 1234566777777888888888888888877776554
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.69 E-value=0.014 Score=52.92 Aligned_cols=92 Identities=16% Similarity=0.061 Sum_probs=67.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC-----C-CCC-CHHh
Q 011463 268 MDGLCKGGCSSQAMELLQMMISKR---HRP----NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-----G-LKP-DAGL 333 (485)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~ 333 (485)
+..+.+.|++++|..++++.++.. ..| ...+++.+..+|...|++++|+.++++.... | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788999999998887641 111 2356788888899999999999888876532 2 122 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
++.+...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888899999999999999888765
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.14 Score=39.27 Aligned_cols=130 Identities=8% Similarity=0.013 Sum_probs=78.4
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456778888888777655 2567788888888888888888888877653 34455556667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHH
Q 011463 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216 (485)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 216 (485)
++...+-+.....| - ++.....+... |+++++.++|.+.-+. |.. . ......|..+.|.++.++
T Consensus 77 e~L~kla~iA~~~g--~----~n~af~~~l~l-Gdv~~~i~lL~~~~r~---~eA-~-----~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE--D----FGSMLLNTFYN-NSTKERSSIFAEGGSL---PLA-Y-----AVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHTT--C----HHHHHHHHHHH-TCHHHHHHHHHHTTCH---HHH-H-----HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc--c----HHHHHHHHHHc-CCHHHHHHHHHHCCCh---HHH-H-----HHHHHcCcHHHHHHHHHH
Confidence 76666655555544 1 23333333334 7888888777665442 111 1 111224556667776665
Q ss_pred H
Q 011463 217 M 217 (485)
Q Consensus 217 ~ 217 (485)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.61 E-value=0.06 Score=39.58 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=78.3
Q ss_pred CCCHHhHHHHHHHHHhcCCc------chHHHHHHHHhhcCCCCCHHHHHHHHH------HHhccCChhhHHHHHHHHHhc
Q 011463 47 RHDNSTFSLMISKLVSANQF------RPAEDLLDRVNKEKCDITEDIFLSICR------GYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 114 (485)
+.|+++|-..+..+-+.|+. ++..++|+++...-|+.....|...+. .+...++.++|.++|+.+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56788888888888888888 888888888877543211111222111 123347888999999988765
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011463 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164 (485)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 164 (485)
. +.-...|......-.++|+...|.+++.+.+..+..| ...+...+..
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 2 3337777777787888999999999999988876433 4444555544
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.59 E-value=0.051 Score=39.93 Aligned_cols=118 Identities=11% Similarity=0.135 Sum_probs=74.1
Q ss_pred CCCHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCc-ccccchhhhHHHHHHHHhc-CChhHHHHHHHHHH
Q 011463 328 KPDAGLYGKIISCFCDIGKY------QEAANFLDEMVLGGITPNR-LTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMR 399 (485)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~~~ 399 (485)
+-|..+|-..+...-+.|+. ++.+++|++.... ++|+. ..|...+.++-..... .. .++++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 34666777777777666777 7777888877763 44542 2232222222222211 12 28889999999887
Q ss_pred hCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011463 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449 (485)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 449 (485)
+.+-+. ...|......-.+.|+...|.+++.+.+..+.+| ...+...+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 654343 6677777777778999999999999998876443 33334333
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.53 E-value=0.036 Score=55.44 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=86.8
Q ss_pred HhccCChhhHHH-HHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 95 YGRVHRPLDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 95 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
....+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. | ..-+. ..... |+++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-~~~f~----~~l~~-~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-DQKFE----LALKV-GQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-HHHHH----HHHHH-TCHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------c-chhee----hhhhc-CCHH
Confidence 345677777765 44221 1122336666777778888887766531 1 11122 22334 8888
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
.|.++.+.+. +...|..+...+.+.++++.|++.|.++.. |..+...+...++.+...++.+...
T Consensus 670 ~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 8888765542 667888888889999999998888887643 3344455555666665555544444
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHH
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (485)
..|. ++....+|.+.|++++|.+++.
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 4321 1222333444455555544443
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.50 E-value=0.075 Score=53.14 Aligned_cols=156 Identities=12% Similarity=0.175 Sum_probs=94.8
Q ss_pred HHHHHccCCHHHHHH-HHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 19 LQLIRAEKDVNKALV-IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
.......+++++|.+ ++.. + + +......++..+.+.|.++.|.++.+. .. .-......
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-i-------~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~ 664 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-V-------E-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALK 664 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-C-------C-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHH
T ss_pred HhHHHHhCCHHHHHHHHHhc-C-------C-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhh
Confidence 344456788888866 4421 1 1 123347777888888888888876531 11 11334556
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
.|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...+... |+.+...+
T Consensus 665 ~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~-~~~~~~~~ 728 (814)
T 3mkq_A 665 VGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSF-NNKEGLVT 728 (814)
T ss_dssp HTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHT-TCHHHHHH
T ss_pred cCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHc-CCHHHHHH
Confidence 78999888876543 3678899999999999999999999987643 22333333334 66666555
Q ss_pred HHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
+-+.....| -++.-..+|.+.|++++|+++|.++
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 554444432 1223333455566666666655543
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.44 E-value=0.014 Score=43.44 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcC---CcchHHHHHHHHhhcC-CCCCHHHHHHHHHHHhccCCh
Q 011463 26 KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN---QFRPAEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRP 101 (485)
Q Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 101 (485)
.....+.+.|+... ..+ +++..+...+..++++.+ +.++++.+|+.+.+.+ +.-+.+.+..+.-+|.+.|++
T Consensus 12 ~~l~~~~~~y~~e~---~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 12 EDLLKFEKKFQSEK---AAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHH---HTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHH---ccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 34455666666655 223 467777777777777777 5557777887777764 211355666666777777888
Q ss_pred hhHHHHHHHHHhc
Q 011463 102 LDAMRVFDKMKEF 114 (485)
Q Consensus 102 ~~a~~~~~~~~~~ 114 (485)
++|.+.++.+++.
T Consensus 88 ~~A~~y~~~lL~i 100 (152)
T 1pc2_A 88 EKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 8888888777775
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.87 E-value=0.015 Score=52.17 Aligned_cols=375 Identities=11% Similarity=0.090 Sum_probs=210.4
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
.+-.+..++.+..+.|.+++-++.+.-+. +. ..++..=+.++-+|++.++..+..+++. .|+..-...
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaR---k~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~ 149 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMAR---KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ 149 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTS---TT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH---HH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHH
Confidence 45567789999999999999999998877 22 3344455778999999999887655542 356666777
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcC--------------------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFG--------------------CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
+.+-|...|.++.|.-+|..+.... -..++.+|..+-.+|...+++..|.-.--.++-.
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh- 228 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH- 228 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-
T ss_pred HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-
Confidence 7888888888888877776553211 1346788999999999999888776554444421
Q ss_pred CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCC------
Q 011463 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACS------ 223 (485)
Q Consensus 151 ~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------ 223 (485)
|+ .+..++..|-.. |.+++.+.+++.-... -......|+.|.-.|++- ++++..+.++..-.+ +++
T Consensus 229 --ad--eL~elv~~YE~~-G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 229 --AD--ELEELINYYQDR-GYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp --SS--CCSGGGSSSSTT-CCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred --HH--HHHHHHHHHHhC-CCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 21 123344445455 8888888888776643 223566777777777664 444444444332111 111
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHH-------------HHHHhCCCCCCHhhH---------------HHHHHHHHcCC
Q 011463 224 PTVVTYTSLINGLCQSKSVEEAMRLF-------------EEMRSKGVEPNVFTY---------------SSLMDGLCKGG 275 (485)
Q Consensus 224 ~~~~~~~~ll~~~~~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~---------------~~l~~~~~~~~ 275 (485)
-....|..++-.|.+-.+++.|.... .++... ..+...| +-|+.++...=
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prl 379 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRL 379 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTC
T ss_pred HHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccC
Confidence 12344555566666555555543221 000000 1122333 33444444444
Q ss_pred ChHHHHHHHHHHHhC----------CCCCChhhHHHHHHHHHhcCCHHHHHH------------HHHHHhHCCCCCCHHh
Q 011463 276 CSSQAMELLQMMISK----------RHRPNIVTYSTLLNGLCKEGKLQEAVE------------ILDRMKLQGLKPDAGL 333 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~ 333 (485)
|...+.++|++.-.. ....+..+-.++-..|....|++.-.. +-+++.+ ++-...
T Consensus 380 Dh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEk---HeL~eF 456 (624)
T 3lvg_A 380 DHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK---HELIEF 456 (624)
T ss_dssp CSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHT---CSSHHH
T ss_pred ChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhh---CchHHH
Confidence 444444444432110 011123334455555666666554332 2222222 122333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSS 412 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 412 (485)
-......|.+.++|++++.+.++ ...|. -.+.....+ +.+-+.++++-..+.| +...|..
T Consensus 457 RrIAA~LYkkn~rw~qsi~l~Kk---------Dklyk-------DAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a 517 (624)
T 3lvg_A 457 RRIAAYLFKGNNRWKQSVELCKK---------DSLYK-------DAMQYASESKDTELAEELLQWFLQEE---KRECFGA 517 (624)
T ss_dssp HHHHHHHHHTTCHHHHHSSCSST---------TCCTT-------GGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHh---------cccHH-------HHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHH
Confidence 33444556677777777655321 12222 222233334 7777787877777654 4566777
Q ss_pred HHHHHHhcCCHHHHHHH
Q 011463 413 LITCFCKKGDIHKSARI 429 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~ 429 (485)
.+..|...=+++-++++
T Consensus 518 ~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 518 CLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHTSSSSSCHHHHHH
T ss_pred HHHHHhhccChHHHHHH
Confidence 77666666666666554
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.78 E-value=0.72 Score=38.60 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-CCChH
Q 011463 208 YEAKELFKEMETKACSPT---VVTYTSLINGLCQS-----KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK-GGCSS 278 (485)
Q Consensus 208 ~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 278 (485)
..|...+++..+. .|+ ...|..+...|... |+.++|.+.|++..+.+..-+..++......++. .|+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555566666553 344 44677777777773 7788888888887776432235666666777766 37778
Q ss_pred HHHHHHHHHHhCCCC
Q 011463 279 QAMELLQMMISKRHR 293 (485)
Q Consensus 279 ~a~~~~~~~~~~~~~ 293 (485)
.+.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 888888887776544
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.76 E-value=0.035 Score=39.74 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCcHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK---SARIVDELVLDGCLP--DEGTWSAVMTALWDRRKMRQA 461 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 461 (485)
....+.+-|.+....+. ++..+--.+.+++.+..+..+ ++.+++...+.+ .| .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 44555666666655444 466676777888888887665 899999988763 24 233444567789999999999
Q ss_pred HHHHHHHHHcCCCccc
Q 011463 462 AELLLLELMNKCVEAE 477 (485)
Q Consensus 462 ~~~~~~~~~~~~~~~~ 477 (485)
.++++.+++..+....
T Consensus 94 ~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 9999999997765443
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.70 E-value=0.066 Score=44.74 Aligned_cols=63 Identities=5% Similarity=0.077 Sum_probs=29.3
Q ss_pred hHHHHHHHHHh-----cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc-CChhhHHHHHHHHHhc
Q 011463 52 TFSLMISKLVS-----ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV-HRPLDAMRVFDKMKEF 114 (485)
Q Consensus 52 ~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 114 (485)
.|..++..|.. .|+.++|.+.|++.++.++.-+..++......++.. |+.+.+.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 44444444444 245555555555555444332344444444444442 4455555555554443
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.57 Score=35.88 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=78.6
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|... |+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~t-g~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVT-GDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHH-TCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHh-CCH
Confidence 3445678888888877655 2677888888888888888888888876643 22232233334 777
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 252 (485)
+...++-+.....| -++.-..++...|+++++.++|.+.... |.. .......|..+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~---~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSL---PLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCH---HHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCCh---HHH------HHHHHHcCcHHHHHHHHHHh
Confidence 76666555555443 2444555566778888888887665331 111 11112246667777776655
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.39 E-value=0.49 Score=34.08 Aligned_cols=140 Identities=15% Similarity=0.087 Sum_probs=94.3
Q ss_pred HhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC
Q 011463 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (485)
.-.|..++..++..+.... .+..-+|-++--....-+-+-..++++.+-+ ..|.. .+
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis-----------------~C 74 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD-----------------KC 74 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG-----------------GC
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcH-----------------hh
Confidence 4467777777777777663 2455566666555555666666666665533 11111 11
Q ss_pred -ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHH
Q 011463 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465 (485)
Q Consensus 387 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 465 (485)
+......-+-.+ + .+...++..++.+...|.-++..+++..+... -+|+......+..||.+.|+..+|.+++
T Consensus 75 ~NlKrVi~C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 222222222222 1 15677788889999999999999999996543 4788888999999999999999999999
Q ss_pred HHHHHcCCCc
Q 011463 466 LLELMNKCVE 475 (485)
Q Consensus 466 ~~~~~~~~~~ 475 (485)
.++-++|...
T Consensus 149 ~~AC~kG~kE 158 (172)
T 1wy6_A 149 IEACKKGEKE 158 (172)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHhhhHH
Confidence 9999998654
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.82 E-value=0.18 Score=37.97 Aligned_cols=72 Identities=6% Similarity=-0.010 Sum_probs=49.8
Q ss_pred ccccccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH-------HhHHHHHHHHHhcCCcchHHHHHHHHh
Q 011463 5 TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN-------STFSLMISKLVSANQFRPAEDLLDRVN 77 (485)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 77 (485)
..+.-.+.+....-++.+...|.++.|+-+.+.+.... ...++. .++..++.++...|++.+|...|++++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~--~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLS--NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh--cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44556677888888899999999999999999877432 122331 256777889999999999999999865
Q ss_pred h
Q 011463 78 K 78 (485)
Q Consensus 78 ~ 78 (485)
.
T Consensus 91 q 91 (167)
T 3ffl_A 91 Q 91 (167)
T ss_dssp H
T ss_pred H
Confidence 4
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.79 E-value=0.54 Score=41.97 Aligned_cols=77 Identities=9% Similarity=0.070 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-----IGIQPCVASLNVL 161 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 161 (485)
+...++..+...|++.+++..+..+.... |.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45556777778888888888888877654 55777888888888888888888888887653 4788877655444
Q ss_pred HHH
Q 011463 162 IKA 164 (485)
Q Consensus 162 l~~ 164 (485)
-..
T Consensus 252 ~~i 254 (388)
T 2ff4_A 252 ERI 254 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.61 E-value=0.14 Score=36.66 Aligned_cols=86 Identities=19% Similarity=0.092 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcch---HHHHHHHHhhcC-CCCCHHHHHHHHHHHhccCC
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP---AEDLLDRVNKEK-CDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 100 (485)
......+.+-|+... ..+ +++..+--.+..++.+.++... ++.+++.+.+.+ +.-.......+.-++.+.|+
T Consensus 14 ~~~l~~~~~~y~~e~---~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEK---AAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHH---HHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHh---ccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 334444455555444 112 2455555555555555554444 555666555543 11123344445555556666
Q ss_pred hhhHHHHHHHHHhc
Q 011463 101 PLDAMRVFDKMKEF 114 (485)
Q Consensus 101 ~~~a~~~~~~~~~~ 114 (485)
+++|.+.++.+++.
T Consensus 90 Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 90 YEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666553
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.24 E-value=1.1 Score=32.41 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=29.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (485)
+...+......|.-+...+++..+... .+|++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344444444555555555555543222 24444444455555555555555555555554444
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.93 E-value=0.26 Score=35.45 Aligned_cols=73 Identities=5% Similarity=0.004 Sum_probs=54.7
Q ss_pred CCccchhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 402 SISVDSLTYSSLITCFCKKGDI---HKSARIVDELVLDGCLP--DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
+..|+..+--.+.+++.++.+. .+++.+++.+.+.+ | ....+-.+.-++.+.|++++|.++.+.+++..+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 5556666666677788877654 57888999988764 4 234555677789999999999999999999765544
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.37 E-value=0.72 Score=33.65 Aligned_cols=73 Identities=5% Similarity=-0.037 Sum_probs=51.1
Q ss_pred ccchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 404 SVDSLTYSSLITCFCKKGD---IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 404 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
.|+..+--.+.+++.++.+ ..+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+++..+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 4566666667777877765 456888888888753111233444566788999999999999999999765543
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.79 E-value=1 Score=46.72 Aligned_cols=192 Identities=8% Similarity=0.034 Sum_probs=109.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC----C-----------
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK----C----------- 81 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~----------- 81 (485)
.++..+...+.++-|.++..... .++..-..+++++...|++++|.+.|++....- .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~--------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN--------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccc
Confidence 34555666677766666544332 344444556777777888888888776652210 0
Q ss_pred -------CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 82 -------DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP----KSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 82 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..-..-|..++..+.+.|.++.++++-....+..-+.+. ..|..+...+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 001134566777777778888777776666543211111 246777777888888888877777666544
Q ss_pred CCCCHHHHHHHHHHHHhc-----------CCChHHHHHHHHhhhhCC--CCCCHHhHHHHHHHHHHcCCHhHHHH-HHHH
Q 011463 151 IQPCVASLNVLIKALCKN-----------SGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEAKE-LFKE 216 (485)
Q Consensus 151 ~~~~~~~~~~ll~~~~~~-----------~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~ 216 (485)
. -...+..++..++.. .|..++..+++....+.. +...+..|..|-..+...|++..|-. +|+.
T Consensus 969 ~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 2 334455555555533 145566666665433221 11122345555555667777766544 4555
Q ss_pred HH
Q 011463 217 ME 218 (485)
Q Consensus 217 ~~ 218 (485)
+.
T Consensus 1047 ~~ 1048 (1139)
T 4fhn_B 1047 LS 1048 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.62 E-value=0.73 Score=44.72 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
..|...|+++.|+.+-++..... |-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34566788888888888877753 445678888888888888888888887776
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.83 Score=44.34 Aligned_cols=127 Identities=11% Similarity=0.054 Sum_probs=78.1
Q ss_pred HHHHHHHHhccCC-hhhHHHHHHHHHhcCCCCCHhhH--HHHHHHHHHcC-CHHHHHHHHHHHHHc------CCCCC---
Q 011463 88 FLSICRGYGRVHR-PLDAMRVFDKMKEFGCEPTPKSY--ITVLAILVEEN-QLKLAFRFYRHMREI------GIQPC--- 154 (485)
Q Consensus 88 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~~--- 154 (485)
-..++..+...++ .+.|..+|+++.+.. |....+ ..++..+...+ +--+|.+++.+..+. ..++.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555666 477999999988764 433332 22333322222 223455555544321 11111
Q ss_pred --------HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011463 155 --------VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 155 --------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (485)
....+.-...+... |+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K-~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNR-GDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhcc-CcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11233334444555 99999999999988863 3367899999999999999999999888874
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.51 E-value=2.2 Score=37.98 Aligned_cols=78 Identities=10% Similarity=-0.024 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh-----CCCCCCHHhHHH
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN-----RGCTPDSYTYGT 196 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 196 (485)
+...++..+...|++.++...+..+.... +.+...+..++.++.+. |+..+|++.|+...+ .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~-Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLS-DRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 45667788889999999999999988765 45777899999999998 999999999988754 489998876554
Q ss_pred HHHHH
Q 011463 197 LINGL 201 (485)
Q Consensus 197 l~~~~ 201 (485)
.-...
T Consensus 251 ~~~il 255 (388)
T 2ff4_A 251 NERIL 255 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.98 E-value=6 Score=41.16 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=126.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc----C-------------
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF----G------------- 115 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~------------- 115 (485)
...++..+...+.++-+.++...... ++..--.+..++...|++++|.+.|.+.... +
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 44567788899999988887766543 3444455778899999999999999765210 0
Q ss_pred -----CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCChHHHHHHHHhhhhCC
Q 011463 116 -----CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV----ASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186 (485)
Q Consensus 116 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 186 (485)
...-..-|..++..+.+.+.++.+.++-...++...+-+. ..|..+...+... |++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l-~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA-GKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH-CCSGGGGHHHHHHHHSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh-CCHHHHHHHHHhCCCHH
Confidence 0112456788999999999999999998887765322221 2567788888888 99999999998877653
Q ss_pred CCCCHHhHHHHHHHHHHc------------CCHhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHHH-HHHHHH
Q 011463 187 CTPDSYTYGTLINGLCRL------------GKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEEA-MRLFEE 251 (485)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~ 251 (485)
. -..+...|+..++.. |..++..+++..-.... +...+.-|..|-.-+...|++.+| .-+|+.
T Consensus 969 ~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 3 345666666655544 44567777765433221 111122244444445566666554 445555
Q ss_pred HHh
Q 011463 252 MRS 254 (485)
Q Consensus 252 ~~~ 254 (485)
+.+
T Consensus 1047 ~~R 1049 (1139)
T 4fhn_B 1047 LSR 1049 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.96 E-value=8.7 Score=36.56 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCC-hhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCH
Q 011463 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423 (485)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (485)
.+.+.|...+....+... .+..... .+...+........ ..++...+......... .....-.+....+.|++
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~---~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQ---ELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS--TSLIERRVRMALGTGDR 301 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHH---HHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHH---HHHHHHHHHHHHcCCChHHHHHHHhccccCCC--hHHHHHHHHHHHHCCCH
Confidence 367888888877754321 1211111 01112222222223 55666666665543322 22233333444567888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+.|...|+.|.... .....-.--+..++.+.|+.++|..+|+++.+
T Consensus 302 ~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888876531 11122222345667788888888888888765
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.57 E-value=1.5 Score=29.66 Aligned_cols=63 Identities=10% Similarity=0.114 Sum_probs=47.0
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+.-+..+-+..+......|++.+..+.+++|.+.+++.-|+++|+-...+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 33445566666677788889999999999999999999999999888765 3344455766654
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.86 E-value=3.3 Score=30.21 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=44.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcc---hHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 47 RHDNSTFSLMISKLVSANQFR---PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.|++.+--....++.++.+.+ +++.+++.+.+.++.-..+..-.+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 466666556666666666443 56777777776654434455556666777777777777777777764
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.59 E-value=9.8 Score=34.59 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=29.1
Q ss_pred CCHhHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 205 GKIYEAKELFKEMETK-----ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
|+++.|++.+..+.+. ....+......++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5667777666555432 1222344556666777777777776666655543
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.20 E-value=4.4 Score=29.18 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 447 (485)
+..+++.+++.+.+.++.-....+-.+.-++.+.|++++|.+..+.+.+. .|+..-...
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA~~ 116 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 66789999999987664334566677888999999999999999999986 676554443
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.82 E-value=8.1 Score=29.10 Aligned_cols=60 Identities=8% Similarity=0.049 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhcC-CCCC-------HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011463 88 FLSICRGYGRVHRPLDAMRVFDKMKEFG-CEPT-------PKSYITVLAILVEENQLKLAFRFYRHMR 147 (485)
Q Consensus 88 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (485)
+..-+..+...|.++.|+-+.+.+.... ..|+ ..++..+..++...+++..|...|++.+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3334445555566666665555543320 1122 1234555566666777777777766654
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.64 E-value=12 Score=33.84 Aligned_cols=61 Identities=8% Similarity=0.032 Sum_probs=38.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhc--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEF--GCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (485)
+...+...|.+.|+++.|.+.|.++... +...-...+...++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556666777777777777777776543 222234556666666777777777776666654
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.57 E-value=18 Score=30.81 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=14.1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 225 TVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 225 ~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
++.....+...|.+.+++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3444555555666666666665555
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.12 E-value=8.5 Score=34.80 Aligned_cols=98 Identities=11% Similarity=-0.046 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHhh--HH
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKAC--SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK---GVEPNVFT--YS 265 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 265 (485)
+...+...|.+.|+++.|.+.|.++..... ..-...+-..++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566778888888888888888888876422 223445666777888888888888888776532 22222211 01
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 266 SLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
.-...+...+++..|...|-.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122334578888888887776554
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.03 E-value=5.2 Score=32.98 Aligned_cols=53 Identities=15% Similarity=-0.055 Sum_probs=28.4
Q ss_pred HHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 60 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
+.+.|++++|++....-++..|. |...-..+++.+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555555555555555555443 555555555555555555555555555544
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.02 E-value=11 Score=27.15 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+..+-+..+......|++.+....+++|.+.+|+.-|+++|+-...+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34455556666778889999999999999999999999999888765 3444556776654
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.75 E-value=42 Score=33.69 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=71.8
Q ss_pred HHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH--HHH
Q 011463 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS--CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN--TVV 380 (485)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ 380 (485)
.+...|+.+....++..+.+.. +..+...+.. ++...|+.+.+..+++.+... .+.. .+... ++.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~-----vRygaa~alg 567 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESL-----LRYGGAFTIA 567 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHH-----HHHHHHHHHH
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHH-----HHHHHHHHHH
Confidence 3455677776677776665531 3333333333 334567777777777766542 1111 11111 222
Q ss_pred HHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcH-
Q 011463 381 QGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM- 458 (485)
Q Consensus 381 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~- 458 (485)
.+|+.. +.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+..+....|..
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCC
T ss_pred HHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCc
Confidence 233344 4444444666665432 1123322233334444566566666665555432 33333333333333334332
Q ss_pred HHHHHHHHHHHH
Q 011463 459 RQAAELLLLELM 470 (485)
Q Consensus 459 ~~A~~~~~~~~~ 470 (485)
.++++.+.++..
T Consensus 646 ~~aid~L~~L~~ 657 (963)
T 4ady_A 646 QSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc
Confidence 466666666654
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.23 E-value=9.3 Score=25.77 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 104 (485)
....++|..+-+.+. ..+. ...+-..-+..+...|+|++|..+.+... .||...|..+... +.|-.+++
T Consensus 20 ~H~HqEA~tIAdwL~---~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~l 88 (116)
T 2p58_C 20 NHYHEEANCIAEWLH---LKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSAL 88 (116)
T ss_dssp TTCHHHHHHHHHHHH---HTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHH
T ss_pred chHHHHHHHHHHHHH---hCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHH
Confidence 345666777766666 2221 22222222345566777777776665443 3566666555433 55666666
Q ss_pred HHHHHHHHhcC
Q 011463 105 MRVFDKMKEFG 115 (485)
Q Consensus 105 ~~~~~~~~~~~ 115 (485)
...+.++...|
T Consensus 89 e~rL~~la~sg 99 (116)
T 2p58_C 89 ESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhCC
Confidence 66666665554
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.89 E-value=9.8 Score=25.79 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=39.0
Q ss_pred ChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 011463 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 233 (485)
+.=+..+-++.+...+..|++....+.+++|.+.+++..|.++|+.+..+- .+....|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444566666666666677777777777777777777777777777665542 22233455444
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.18 E-value=26 Score=30.16 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=18.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 294 PNIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
-|+.....+...|.+.+++.+|+..|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35666677777777888888777766
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.52 E-value=8.7 Score=25.85 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=44.1
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 104 (485)
....++|..+-+.+. ..+. ...+-..-+..+...|+|++|..+.+... .||...|..+... +.|-.+++
T Consensus 19 ~H~HqEA~tIAdwL~---~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~l 87 (115)
T 2uwj_G 19 QHCHEEALCIAEWLE---RLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAAL 87 (115)
T ss_dssp TTCHHHHHHHHHHHH---HTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHH
T ss_pred chHHHHHHHHHHHHH---hCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHH
Confidence 345667777776666 2221 22222222345567777777776655443 4566666555433 56666666
Q ss_pred HHHHHHHHhcC
Q 011463 105 MRVFDKMKEFG 115 (485)
Q Consensus 105 ~~~~~~~~~~~ 115 (485)
...+.++...|
T Consensus 88 e~rL~~la~sg 98 (115)
T 2uwj_G 88 DRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHHhCC
Confidence 66666666554
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.02 E-value=34 Score=30.31 Aligned_cols=159 Identities=10% Similarity=-0.023 Sum_probs=83.6
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHhhHHHH-
Q 011463 196 TLINGLCRLGKIYEAKELFKEMETKACSPT-----VVTYTSLINGLCQSKSVEEAMRLFEEMRSK--GVEPNVFTYSSL- 267 (485)
Q Consensus 196 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l- 267 (485)
.++..|...|++.+|.+++.++.+.-...| ...+..-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 577888888888888888888765311111 223455566777888888888888776543 222333332211
Q ss_pred ---HHHHH-cCCChHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHH-HHhHCCCCCCHHhHHH
Q 011463 268 ---MDGLC-KGGCSSQAMELLQMMISKRHRPN------IVTYSTLLNGLCKEGKLQEAVEILD-RMKLQGLKPDAGLYGK 336 (485)
Q Consensus 268 ---~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ 336 (485)
...+. ..+++..|...|-+..+.-.... ...|..+. + .-.++..+...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-a-Ll~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-K-IMLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-H-HHTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-H-HHcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 22345 67888888887776643211111 11222221 1 22233222222221 1111112345555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~ 357 (485)
++.+| ..+++.+...+++..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHH-HhCCHHHHHHHHHHH
Confidence 66655 456776666666554
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.99 E-value=21 Score=27.98 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011463 388 PNRAFQVYLSMRNRSISV-DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440 (485)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 440 (485)
..++..+|.-|...++.. -...|......+...|++.+|.++|+.-++.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 557777777777655432 34456666667777777777777777777776666
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.39 E-value=35 Score=29.04 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=16.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
++.....+...|.+.|++.+|+..|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5556666666777777777766655
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.64 E-value=20 Score=25.85 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011463 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 234 (485)
|.=+..+-++.+...++.|++....+-+++|-+.+|+..|.++|+-+..+ ..+....|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34455666666666677777777777777777777777777777777654 2223444555543
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.46 E-value=29 Score=27.16 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=39.2
Q ss_pred CCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC
Q 011463 274 GGCSSQAMELLQMMISKRHRP-NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329 (485)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (485)
.+....+.++|..|...++-. -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444667778888877776543 34456667777777888888888888877776555
No 267
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=70.83 E-value=23 Score=26.83 Aligned_cols=34 Identities=6% Similarity=-0.132 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchh
Q 011463 446 SAVMTALWDRRKMRQAAELLLLELMNKCVEAEVD 479 (485)
Q Consensus 446 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (485)
+.+...|.+.|+.++|+..+.......+.-+.|+
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 3344455566777777766666655555444443
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.19 E-value=50 Score=27.29 Aligned_cols=118 Identities=9% Similarity=0.011 Sum_probs=71.4
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
....+.|+++++++....-++.. |.|...-..++..++-.|+++.|.+-++...+.. |+...-..+...+.+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH----
Confidence 34567888888888888777764 6677788888899999999999999888888754 5544333232322222
Q ss_pred HHHHHHHHhhhhCCCCC-----CHHhHHHHHHHHH--HcCCHhHHHHHHHHHHHC
Q 011463 173 DAAFKIFREMPNRGCTP-----DSYTYGTLINGLC--RLGKIYEAKELFKEMETK 220 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 220 (485)
+..=.+...-+-.| ...-...++.+.. ..|+.++|..+-....+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11122222221111 2223334444433 458888888777776543
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=66.24 E-value=71 Score=28.31 Aligned_cols=232 Identities=10% Similarity=-0.039 Sum_probs=119.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCChhhHHH--
Q 011463 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPN-----VFTYSSLMDGLCKGGCSSQAMELLQMMISK--RHRPNIVTYST-- 301 (485)
Q Consensus 231 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~-- 301 (485)
.++..|...|++.+|..++..+.+.-...| ...+..-+..|...+++.++...+...... .+.+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 577889999999999999988876311112 233555667788899999999999887543 12233333222
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHHhHCCCCCC------HHhHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCcccccc
Q 011463 302 --LLNGLC-KEGKLQEAVEILDRMKLQGLKPD------AGLYGKIISCFCDIGKYQEAANFLD-EMVLGGITPNRLTWSL 371 (485)
Q Consensus 302 --l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ 371 (485)
-...+. ..+++..|...|-+..+.-.... ...|..+. +. -.++..+...++. .....-..|+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aL-l~~~r~el~~~l~~~~~~~~~~pei~---- 257 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KI-MLGQSDDVNQLVSGKLAITYSGRDID---- 257 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HH-HTTCGGGHHHHHHSHHHHTTCSHHHH----
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HH-HcCCHHHHHHHhccccccccCCccHH----
Confidence 123456 78999999888766532100111 11222222 22 2222222222221 111110123222
Q ss_pred hhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011463 372 HIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451 (485)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 451 (485)
.+..++.++...++.....+++..... +..|+.....+ ..+.+ .- -...+.++.+ +-+..++..+...
T Consensus 258 ---~l~~L~~a~~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~-~~L~~-~I---r~~~L~~i~~---pYsrIsl~~iA~~ 325 (394)
T 3txn_A 258 ---AMKSVAEASHKRSLADFQAALKEYKKE-LAEDVIVQAHL-GTLYD-TM---LEQNLCRIIE---PYSRVQVAHVAES 325 (394)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHSTTT-TTTSHHHHHHH-HHHHH-HH---HHHHHHHHHT---TCSEEEHHHHHHH
T ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcChHHHHHH-HHHHH-HH---HHHHHHHHhH---hhceeeHHHHHHH
Confidence 222566666666666666655544321 22233211110 00000 00 0011112221 2355666666655
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCccchhccc
Q 011463 452 LWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482 (485)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 482 (485)
+. . ..+++...+-+|+..|.....++-.|
T Consensus 326 l~-l-s~~evE~~L~~lI~dg~I~a~IDq~~ 354 (394)
T 3txn_A 326 IQ-L-PMPQVEKKLSQMILDKKFSGILDQGE 354 (394)
T ss_dssp HT-C-CHHHHHHHHHHHHHTTSSCEEEETTT
T ss_pred HC-c-CHHHHHHHHHHHHHCCCeeEEEcCCC
Confidence 43 3 67899999999999998776665544
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.21 E-value=70 Score=27.52 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhcCCcchHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLD 74 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~ 74 (485)
.|..+..-|.+++++++|++++-
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~ 59 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA 59 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH
Confidence 34444445556666666666543
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.89 E-value=72 Score=27.79 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCCcc
Q 011463 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR--KMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 410 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~ 476 (485)
.+.++.-|...|+.++|.+.++++..-.+.+ ......+..++-+.+ ..+...+++..+...+..+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4677888888899999999998885211111 122233444444443 23457777777777665543
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.36 E-value=76 Score=27.65 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
...++.-|...|+.++|.+.++++.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc
Confidence 4667778888889999998888874
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.15 E-value=64 Score=26.41 Aligned_cols=13 Identities=0% Similarity=0.220 Sum_probs=5.6
Q ss_pred HHHHHHHHHhCCC
Q 011463 280 AMELLQMMISKRH 292 (485)
Q Consensus 280 a~~~~~~~~~~~~ 292 (485)
..++++.+.+.|.
T Consensus 198 ~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 198 VEAITHLLLDHGA 210 (285)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 3444444444443
No 274
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.28 E-value=95 Score=28.09 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=48.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHcCCChHHHHHHHHHHHh----CCCCCC--hhhH
Q 011463 231 SLINGLCQSKSVEEAMRLFEEMRSK--GVEPN---VFTYSSLMDGLCKGGCSSQAMELLQMMIS----KRHRPN--IVTY 299 (485)
Q Consensus 231 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~ 299 (485)
.|...+...|++.+|..++..+... +.... ...+..-++.|...+++..|..++.++.. ....|+ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3455555666666666666665422 11111 22344455566666677776666666532 111111 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 011463 300 STLLNGLCKEGKLQEAVEILDRMK 323 (485)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~~~ 323 (485)
...+..+...+++.+|...|.++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455556666777777766665553
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.49 E-value=51 Score=24.41 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC
Q 011463 280 AMELLQMMISKRHRPN-IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329 (485)
Q Consensus 280 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (485)
+.++|..|...++-.. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6667777766655332 3445566666666777777777777766665555
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.97 E-value=55 Score=24.62 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 011463 102 LDAMRVFDKMKEFGCEPT-PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155 (485)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (485)
+.+.++|..|...|+-.. +..|......+-..|++.+|.++|..-++.+..|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 457778888888766544 455677777788888888888888888887776643
No 277
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=58.36 E-value=1.6e+02 Score=29.74 Aligned_cols=251 Identities=11% Similarity=0.046 Sum_probs=133.0
Q ss_pred CChHHHHHHHHhhhhCCCCCC--HHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-------CCChhhHHHHHHH--HHc
Q 011463 170 GTMDAAFKIFREMPNRGCTPD--SYTYGTLINGLCRLGKIYEAKELFKEMETKAC-------SPTVVTYTSLING--LCQ 238 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~--~~~ 238 (485)
|+.++++.++......+...+ ...-..+.-+....|...++..++.......- .+....-..+.-+ |.-
T Consensus 388 g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G 467 (963)
T 4ady_A 388 GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG 467 (963)
T ss_dssp SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence 888888888887765321112 23333344445556666677777777654311 0111112222222 333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHH--HHHHHhcCCHHH
Q 011463 239 SKSVEEAMRLFEEMRSKGVEPNVFTYS--SLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL--LNGLCKEGKLQE 314 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~ 314 (485)
.++ +++...+..+.... .+...... ++...+...|+.+....++..+.+.. +..+...+ .-++...|+.+.
T Consensus 468 S~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 468 SAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp CCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGG
T ss_pred CCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHH
Confidence 344 35555555555432 11111122 33344567788888888888877642 22333333 334557899999
Q ss_pred HHHHHHHHhHCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHH
Q 011463 315 AVEILDRMKLQGLKPDAGL--YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRA 391 (485)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a 391 (485)
+..+++.+.... .|.... -..+.-+|+..|+.....+++..+... ++...-. ...+.-++... +.+.+
T Consensus 543 ~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRr-----aAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 543 ADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRR-----AAVIALGFVLLRDYTTV 613 (963)
T ss_dssp GHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHH-----HHHHHHHHHTSSSCSSH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHH-----HHHHHHHhhccCCHHHH
Confidence 999998888642 222221 123445678899988777788888763 2211111 11222223223 55666
Q ss_pred HHHHHHHHhCCCccchhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 011463 392 FQVYLSMRNRSISVDSLTYSSLITCFCKKGDI-HKSARIVDELVL 435 (485)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 435 (485)
.++++.+.+.+ .|....-..+.-+....|.. .+++.++..+..
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 67766555533 33443333344444444543 678888888874
No 278
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=57.90 E-value=1.3e+02 Score=28.63 Aligned_cols=54 Identities=4% Similarity=-0.173 Sum_probs=32.6
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (485)
+.+...-.....+....|+..+|......+-..+.. .+..+..++..+.+.|..
T Consensus 99 p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 445555555666777777776676666666555433 445566666666655544
No 279
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.77 E-value=26 Score=28.56 Aligned_cols=53 Identities=17% Similarity=0.070 Sum_probs=28.6
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCCCHHH-------HHHHHHHHh--ccCChhhHHHHHHHH
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDITEDI-------FLSICRGYG--RVHRPLDAMRVFDKM 111 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 111 (485)
..++.|+.+....+++.+...+..++... ...|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34567777777777776666655444222 222332221 456666665555543
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.21 E-value=85 Score=25.64 Aligned_cols=52 Identities=10% Similarity=0.151 Sum_probs=23.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccchh---hHHHHHHHHHhcCCHHHHHHHH
Q 011463 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSL---TYSSLITCFCKKGDIHKSARIV 430 (485)
Q Consensus 378 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~ 430 (485)
.+..+..........++.+.+.+.|..++.. -.+. +...+..|+.+-+..++
T Consensus 185 ~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH-HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHH
Confidence 3333333334334445555556655544332 2222 33344556655444333
No 281
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=54.57 E-value=47 Score=22.46 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHH
Q 011463 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELF 214 (485)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 214 (485)
..++|..+-+.+...+. ...+-.+-+..+... |++++|..+.+... .||...|.+|. -.+.|-.+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNr-G~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQ-GRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHT-TCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcc-hhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 45555555555554332 111111112223333 66666655544433 44555554443 23555555555555
Q ss_pred HHHHHC
Q 011463 215 KEMETK 220 (485)
Q Consensus 215 ~~~~~~ 220 (485)
.++..+
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 555444
No 282
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=53.60 E-value=68 Score=24.03 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=38.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHH----H--HHhcCcHHHHHHHHHHHHHc
Q 011463 417 FCKKGDIHKSARIVDELVLDGCLP--DEGTWSAVMT----A--LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~----~--~~~~g~~~~A~~~~~~~~~~ 471 (485)
+...|++=+|-++++..-...-.+ +...|..+++ + ..+.|+...|..++.+++..
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344588989988888888764344 4455666666 2 23578888999888888763
No 283
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=53.58 E-value=49 Score=22.40 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=22.6
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
|++++|..+.+... .||...|.+|. -.+.|-.+++...+.++..+
T Consensus 54 G~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 54 GDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp TCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTC
T ss_pred hhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 66666655554443 34555554443 23445555555555454443
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.14 E-value=67 Score=23.80 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 011463 102 LDAMRVFDKMKEFGCEPT-PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV 155 (485)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (485)
+++.++|..|..+|+-.. +..|......+...|++.+|.++|+.-++.+..|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 558899999988876544 556788888888999999999999999988877744
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.09 E-value=79 Score=24.61 Aligned_cols=154 Identities=9% Similarity=-0.025 Sum_probs=72.1
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
.++...-...+..+.+.|.. .+...+..+... ++..+-...+.++.+.++.+. ...+..+.. .++...-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHH
Confidence 34555555566666666653 333333334432 355555566666666665433 333333332 2455555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
+.++.+.++.+. ...+..+.. .++...-...+..+... ++.+ +...+..+.+ .++...-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~-~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 102 AVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEI-GDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHH-CCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHc-CCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 666666655332 233333332 24554545555555554 4432 3333333332 2344444555555555554
Q ss_pred HhHHHHHHHHHH
Q 011463 207 IYEAKELFKEME 218 (485)
Q Consensus 207 ~~~a~~~~~~~~ 218 (485)
..+...+..+.
T Consensus 173 -~~~~~~L~~~l 183 (211)
T 3ltm_A 173 -ERVRAAMEKLA 183 (211)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hhHHHHHHHHH
Confidence 23333333333
No 286
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=52.75 E-value=1.3e+02 Score=27.18 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=59.4
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhh
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (485)
...+.+-|+++-.+ .+.|--...|..-...+...|++++|.++-......-. .+..+.+.+-.+=...|...-
T Consensus 341 ~l~n~~lA~~lA~R------~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giL-Rt~~Ti~rFk~vp~~pgq~sp 413 (494)
T 1bpo_A 341 VLQNPDLALRMAVR------NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGIL-RTPDTIRRFQSVPAQPGQTSP 413 (494)
T ss_dssp TTCCHHHHHHHHHH------TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSS-CSHHHHHHHTTSCCCTTSCCH
T ss_pred ccCCHHHHHHHHHh------cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccc-cCHHHHHHHhcCCCCCCCCCH
Confidence 34556655555543 33444455566666777777777777777666654322 356666555544444555666
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHH
Q 011463 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL 138 (485)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (485)
.+..|..+.+.| ..+..--.-+++.-...|+.+-
T Consensus 414 lL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~l 447 (494)
T 1bpo_A 414 LLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQL 447 (494)
T ss_dssp HHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHH
Confidence 666666666655 3444333444444444555433
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.12 E-value=78 Score=25.58 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=14.4
Q ss_pred HHHHHccCCHHHHHHHHHHhhh
Q 011463 19 LQLIRAEKDVNKALVIFDSATA 40 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~ 40 (485)
+..+..+.++++|.++.++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4566667777777777766553
No 288
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=51.90 E-value=98 Score=25.37 Aligned_cols=49 Identities=8% Similarity=-0.102 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHh---CCCCCChhhHHHHHHHH-----HhcCcHHHHHHHHHHHHHcC
Q 011463 424 HKSARIVDELVL---DGCLPDEGTWSAVMTAL-----WDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 424 ~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~ 472 (485)
+.+.+.|+.+.+ ..++|+..+...++-.+ --.+++++|.++.+++....
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456666666543 24688777665544332 25799999998888776643
No 289
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=51.59 E-value=84 Score=24.50 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=56.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD-----IHKSARIVDELVLDGCLPDEGTWSAVMTAL 452 (485)
Q Consensus 378 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 452 (485)
++......++++.|+-.+-+|++.| +|....=..++.+.-.-|. ..-|...++.....|.+--...+...+.-+
T Consensus 20 Af~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyL 98 (204)
T 2r9g_A 20 AFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDL 98 (204)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4444444449999999999999999 7665555555666655554 234555666666667544444444333333
Q ss_pred H---hcCcHHHHHHHHHHHHHcC
Q 011463 453 W---DRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 453 ~---~~g~~~~A~~~~~~~~~~~ 472 (485)
+ +++-...|+....+.++.+
T Consensus 99 A~aPKSNs~y~A~~~A~~~v~~~ 121 (204)
T 2r9g_A 99 CLSPKSNSAYMALDAALADIREG 121 (204)
T ss_dssp HHSCCCCHHHHHHHHHHHHHHTT
T ss_pred HcCCccHHHHHHHHHHHHHHHhc
Confidence 3 4455556666555656655
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.33 E-value=89 Score=26.52 Aligned_cols=99 Identities=7% Similarity=0.068 Sum_probs=54.9
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD--IHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (485)
.++.-|... +.++|.+.++++...... ...+...+..+.-+.++ .+...+++..+.+.|+-+.......+...+..
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~~ 249 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNE 249 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh
Confidence 555666555 899999988888643222 22334444444444333 45677888888877655554443333333333
Q ss_pred cCc--------HHHHHHHHHHHHHcCCCccc
Q 011463 455 RRK--------MRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 455 ~g~--------~~~A~~~~~~~~~~~~~~~~ 477 (485)
..+ ++--.+++.+++..|..+++
T Consensus 250 l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~ 280 (307)
T 2zu6_B 250 IPDINLDVPHSYSVLERFVEECFQAGIISKQ 280 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHTSSCHH
T ss_pred ccHhhcccccHHHHHHHHHHHHHHCCCCCHH
Confidence 222 22334555666666666543
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.81 E-value=77 Score=23.84 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCC
Q 011463 280 AMELLQMMISKRHRPN-IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330 (485)
Q Consensus 280 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (485)
+.++|..|...++-.. ...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5566777766655332 34455666666667777777777777776665553
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.46 E-value=36 Score=27.15 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 424 HKSARIVDELVLDGCLPDEG-TWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
+++..+|..|...|+--... .|......+-..|++++|.++|+.-++.+..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
No 293
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.97 E-value=80 Score=24.91 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=33.6
Q ss_pred ChhHHHHHHHHHHhCCCccchh-------hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 387 DPNRAFQVYLSMRNRSISVDSL-------TYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
-.+.|+.+|+.+.+...-++.. .-...+-.|.+.|.+++|.+++++....
T Consensus 87 PLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 87 PLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 3577888888777543221111 1123455789999999999999999865
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.74 E-value=68 Score=29.57 Aligned_cols=65 Identities=9% Similarity=0.023 Sum_probs=34.8
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CCCh--hhH-HHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNI--VTY-STLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
...+|.+++.|...+.++.|..+..+..--.. .++. ..| -.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34566677777777777777777776631100 0111 111 11233445566777777766666554
No 295
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=48.70 E-value=93 Score=24.19 Aligned_cols=94 Identities=10% Similarity=0.022 Sum_probs=54.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCChh-hHHHHHHH
Q 011463 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD-----IHKSARIVDELVLDGCLPDEG-TWSAVMTA 451 (485)
Q Consensus 378 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~ 451 (485)
++......++++.|+-.+-+|++.|-+|....=..++.+.-.-|. ..-|...++.....|. |... .+...+.-
T Consensus 13 Af~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~-PE~~i~Laqaviy 91 (201)
T 3bge_A 13 ALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA-YEGERAIAQAIIY 91 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHH
Confidence 444444444999999999999999887665555555556555553 3345666666666664 4333 23322322
Q ss_pred HH---hcCcHHHHHHHHHHHHHcC
Q 011463 452 LW---DRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 452 ~~---~~g~~~~A~~~~~~~~~~~ 472 (485)
++ +++-...|+....+.++.+
T Consensus 92 LA~aPKSNs~y~A~~~A~~~v~~~ 115 (201)
T 3bge_A 92 LSVAPKSNAVYTAFNTAKQQAKDL 115 (201)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHHHS
T ss_pred HHcCCccHHHHHHHHHHHHHHHhc
Confidence 33 4455555655555555554
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.78 E-value=1.1e+02 Score=24.72 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=44.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHC--CCCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011463 197 LINGLCRLGKIYEAKELFKEMETK--ACSP----TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG 270 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (485)
-+..+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 356677777888887777766432 1111 111122222222222222333334444422 3345555566667
Q ss_pred HHcCCChHHHHHHHHHHH
Q 011463 271 LCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~ 288 (485)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777765543
No 297
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.56 E-value=1.1e+02 Score=24.25 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=18.3
Q ss_pred ccCCCChHHHHHHHHc--cCCHHHHHHHHHHhh
Q 011463 9 WSTKITSAQVLQLIRA--EKDVNKALVIFDSAT 39 (485)
Q Consensus 9 ~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~ 39 (485)
|-.-+.+..+..+++. .+++.+-+.+++.++
T Consensus 14 WvlDfyf~~~c~aFR~~r~~dFrq~rdi~eall 46 (235)
T 3bu8_A 14 WVLKFYFHEALRAFRGSRYGDFRQIRDIMQALL 46 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444445555555543 336677777777766
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.81 E-value=1.8e+02 Score=26.46 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 163 (485)
-...|..-.+.+...|++++|.++-...+. |+-.+..+.+.+-..=..-|+..-.+.+|..+.+.| ..+..--..+.+
T Consensus 360 Ad~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r 437 (494)
T 1bpo_A 360 AEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCR 437 (494)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhH
Confidence 444566666667777888888777666543 344566666555444444455555666666666655 344433334444
Q ss_pred HHHhcCCChHHHHHHHH
Q 011463 164 ALCKNSGTMDAAFKIFR 180 (485)
Q Consensus 164 ~~~~~~~~~~~a~~~~~ 180 (485)
..... |+.+-..+.+.
T Consensus 438 ~vL~q-~r~~llekWl~ 453 (494)
T 1bpo_A 438 PVLQQ-GRKQLLEKWLK 453 (494)
T ss_dssp HHHHT-TCHHHHHHHHH
T ss_pred HHHhc-cHHHHHHHHHh
Confidence 44444 55555554443
No 299
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.61 E-value=71 Score=23.96 Aligned_cols=71 Identities=8% Similarity=0.110 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhc--CCCCCHHHHHHHHHHHhccCCh
Q 011463 28 VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKE--KCDITEDIFLSICRGYGRVHRP 101 (485)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 101 (485)
.+.+++-++.... ..|.+.++. -..++..+...++.-.|.++++.+.+. ++..+..+-..-+..+...|-.
T Consensus 13 ~~~~~~~~~~~L~--~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILR--QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHH--HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHH--HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455555555443 345555443 234455555666666777777777665 5555555555555555555543
No 300
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=42.15 E-value=1.2e+02 Score=23.78 Aligned_cols=94 Identities=12% Similarity=0.013 Sum_probs=55.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD-----IHKSARIVDELVLDGCLPDEGTWSAVMTAL 452 (485)
Q Consensus 378 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 452 (485)
++......++++.|+-++-+|++.|-+|....=..++.+.-.-|. ..-|...++.....|.+--...+...+.-+
T Consensus 41 Af~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyL 120 (213)
T 3ctd_A 41 AFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQASLYL 120 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 444444344999999999999999888665555555666655553 334566666666667544444443333333
Q ss_pred H---hcCcHHHHHHHHHHHHHcC
Q 011463 453 W---DRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 453 ~---~~g~~~~A~~~~~~~~~~~ 472 (485)
+ +++-. .|+....+.++.+
T Consensus 121 A~APKSNs~-~A~~~A~~~v~~~ 142 (213)
T 3ctd_A 121 AISPKSNST-KSIFKAMEAIKAT 142 (213)
T ss_dssp HHSCCCCGG-GHHHHHHHHHC--
T ss_pred HcCCccHHH-HHHHHHHHHHHhc
Confidence 3 44555 6666555555554
No 301
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=42.04 E-value=1.4e+02 Score=24.30 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHh---CCCCCChhhHHHHHHH-----HHhcCcHHHHHHHHHHHHHc
Q 011463 424 HKSARIVDELVL---DGCLPDEGTWSAVMTA-----LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 424 ~~a~~~~~~~~~---~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~ 471 (485)
+.+.+.|+.+.+ ..++|+..+...|+-. |--.+++++|.++.+++...
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666543 2468877766554433 22579999999888777664
No 302
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=41.79 E-value=1.4e+02 Score=24.13 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHh---CCCCCChhhHHHHHHH-----HHhcCcHHHHHHHHHHHHHc
Q 011463 423 IHKSARIVDELVL---DGCLPDEGTWSAVMTA-----LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 423 ~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~ 471 (485)
.+.+.+.|+.+.+ ..++|+..+...++-. |--.+++++|.++.+++...
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3556666766543 2468877766554432 22569999999888877654
No 303
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=41.58 E-value=1.7e+02 Score=25.02 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhcCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 102 LDAMRVFDKMKEFGCEPTP--KSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
...+++-.-+...+++|.. -+....+....+.+++..|..+-+++++.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3344444444444444432 234555566667777777777777777655
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.32 E-value=1.5e+02 Score=24.48 Aligned_cols=112 Identities=11% Similarity=0.028 Sum_probs=48.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEP-NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309 (485)
Q Consensus 231 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (485)
..+...+..|+.+-+. .+.+.|..+ +...-.+.+...+..|..+-+.-+++.-...... +..-.+..+...+..
T Consensus 131 t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~ 205 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDN 205 (285)
T ss_dssp SHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHH
T ss_pred CHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHc
Confidence 3444445566655433 333443222 1112233444455667776666666554332221 222222222233344
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356 (485)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (485)
|+.+ +.+.+.+.|..++..... -...|+.+-+.-+++.
T Consensus 206 ~~~~----~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 206 KDIE----MLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIEK 243 (285)
T ss_dssp TCHH----HHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHHH
T ss_pred CCHH----HHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHHc
Confidence 5543 444555666555544321 1335555544444443
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.81 E-value=1.2e+02 Score=23.02 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhCCCCCCh
Q 011463 424 HKSARIVDELVLDGCLPDE 442 (485)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~ 442 (485)
..-.++.+.+.+.|..++.
T Consensus 155 ~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 155 QLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHHHHHTTCCTTC
T ss_pred hhHHHHHHHHHHCCCCCCc
Confidence 3335556666666655543
No 306
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=39.66 E-value=82 Score=22.44 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=28.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
++..+...+..-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555556667777777777776666666665556666655553
No 307
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.37 E-value=1.2e+02 Score=22.64 Aligned_cols=15 Identities=7% Similarity=-0.135 Sum_probs=7.4
Q ss_pred cCCHHHHHHHHHHHH
Q 011463 133 ENQLKLAFRFYRHMR 147 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~ 147 (485)
.|+...|..++.+..
T Consensus 88 rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 88 FEDDDGMRSLFRTSL 102 (161)
T ss_dssp HCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 455555555555443
No 308
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.11 E-value=2.8e+02 Score=26.66 Aligned_cols=80 Identities=14% Similarity=0.029 Sum_probs=35.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---
Q 011463 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK--- 308 (485)
Q Consensus 232 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 308 (485)
....+.-.|+++.|+..+-.. ...+..++...+..|.-.+ .. +.+......-...-+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---ID----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CC----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 334455567777777766543 2334444444443333222 11 111111000012235566666653
Q ss_pred cCCHHHHHHHHHHH
Q 011463 309 EGKLQEAVEILDRM 322 (485)
Q Consensus 309 ~~~~~~a~~~~~~~ 322 (485)
..++..|...|-.+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 45677777766555
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.10 E-value=70 Score=25.90 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=7.1
Q ss_pred hcCCHHHHHHHHHHH
Q 011463 419 KKGDIHKSARIVDEL 433 (485)
Q Consensus 419 ~~g~~~~a~~~~~~~ 433 (485)
..|+.+-+..++++-
T Consensus 234 ~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 234 KTGKIGIFQHIIRRE 248 (260)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhC
Confidence 445555444444443
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.03 E-value=1.2e+02 Score=22.21 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=10.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 197 LINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
++..+...+..-.|.++++.+.+.
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQK 55 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh
Confidence 334444444444455555554443
No 311
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.60 E-value=1.6e+02 Score=23.26 Aligned_cols=182 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHH
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY--ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN--VLIKALC 166 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~ 166 (485)
.+...+..|+.+.+..+++.+.+.|..++.... ...+...+..|+. ++++.+.+.|..++..... ..+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHHH
Q ss_pred hcCCChHHHHHHHHhhh----hCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhh---HHHHHHHHHcc
Q 011463 167 KNSGTMDAAFKIFREMP----NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT---YTSLINGLCQS 239 (485)
Q Consensus 167 ~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~ 239 (485)
.. |+.+.+..+++... ..... +....+.+..+..... .++++.+.+.|..++... ....+...+..
T Consensus 88 ~~-~~~~~~~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 88 EH-RSPTCLRALLDSAAPGTLDLEAR-NYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HT-TCHHHHHHHHHHSCTTSCCTTCC-CTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred Hc-CCHHHHHHHHHcCCCcccccccc-CcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHH
Q 011463 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (485)
|+.+-+..+++. ...+......-.+.+......|..+-+..+++
T Consensus 161 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 161 NSLSMVQLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp TCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.55 E-value=3.6e+02 Score=27.43 Aligned_cols=112 Identities=7% Similarity=-0.025 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHH
Q 011463 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380 (485)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 380 (485)
.++..|...|.++-+.++..- .+.++..--.+..+|...|++++|...|+++- .|+..+.......
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~-------- 880 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL-------- 880 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG--------
T ss_pred HHHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch--------
Confidence 356666777777766554322 23354444567788999999999999998864 3443333222100
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 381 QGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
.....++... +. .......|..++..+-+.+-++.++++.+.+++.
T Consensus 881 --------~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 881 --------REFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp --------HHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred --------hhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0011111111 11 1113347888999999999999999999999875
No 313
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.19 E-value=1.1e+02 Score=22.88 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=20.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhc
Q 011463 126 VLAILVEENQLKLAFRFYRHMREI--GIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~ 168 (485)
++..+...+.+-.|.++++.+.+. +...+..|....|..+...
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~ 82 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEA 82 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Confidence 334444444455555555555544 3333444444444444444
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.98 E-value=2.7e+02 Score=25.79 Aligned_cols=66 Identities=8% Similarity=-0.018 Sum_probs=40.0
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGI-QPC--VASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
...++.+++.|...+.++.|..+..+..-... .++ ...|...+..+....+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45578888888888888888888887642100 011 1233333333222237888888888777665
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.73 E-value=1.2e+02 Score=22.05 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=6.2
Q ss_pred CCHhHHHHHHHHHHH
Q 011463 205 GKIYEAKELFKEMET 219 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~ 219 (485)
+..-.|.++++.+.+
T Consensus 35 ~~~~sa~ei~~~l~~ 49 (145)
T 2fe3_A 35 MAHPTADDIYKALEG 49 (145)
T ss_dssp SSCCCHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHH
Confidence 333344444444433
No 316
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.52 E-value=77 Score=22.96 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 55 LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 55 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
.++..+...++.-.|.++++.+.+.++..+..+....+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334445555556666666666666655555555555555555554
No 317
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=35.07 E-value=92 Score=23.81 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=3.8
Q ss_pred HHHHHHHHcC
Q 011463 141 RFYRHMREIG 150 (485)
Q Consensus 141 ~~~~~~~~~~ 150 (485)
++.+.+++.|
T Consensus 56 ~iv~~Ll~~G 65 (186)
T 3t8k_A 56 KISMFLINKG 65 (186)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 3333333333
No 318
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.75 E-value=61 Score=25.15 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=11.9
Q ss_pred HHHHhccCChhhHHHHHHHHHh
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
+..|.+.|.+++|.++|++...
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHccchHHHHHHHHHHhc
Confidence 3455566666666666665443
No 319
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.78 E-value=1.7e+02 Score=22.81 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=16.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306 (485)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (485)
..+.+.|+-++-+|++.|..|....-..++.+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455666666666666655544433333333333
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.66 E-value=2.7e+02 Score=28.28 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHh
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCV----ASLNVLIKALCK 167 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~ 167 (485)
-|..++..+-+.+.++.+.++-+..++.--.-|. ..++.+.++.+.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 5788899999999999999998888864322222 245555555443
No 321
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.86 E-value=1.8e+02 Score=22.77 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=29.0
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHhHCCCC
Q 011463 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK-----LQEAVEILDRMKLQGLK 328 (485)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 328 (485)
+..+.+.|+-++-+|++.| .|....-..++.+....|. ...|...++.....|.+
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4566677777777777766 4444444444444444443 23344455555555543
No 322
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=32.67 E-value=54 Score=19.55 Aligned_cols=29 Identities=7% Similarity=0.182 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 424 HKSARIVDELVLDGCLPDEGTWSAVMTAL 452 (485)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 452 (485)
++|.+.|.+|++..-.++.-+|...+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666666542233345566555555
No 323
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.59 E-value=48 Score=19.23 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=9.8
Q ss_pred HHHhcCc--HHHHHHHHHHH
Q 011463 451 ALWDRRK--MRQAAELLLLE 468 (485)
Q Consensus 451 ~~~~~g~--~~~A~~~~~~~ 468 (485)
|+.+.|. ++.|.+++++|
T Consensus 29 Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 29 ALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHh
Confidence 3444444 66666666554
No 324
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.57 E-value=1.6e+02 Score=21.80 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=14.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
...++.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445555666666666666665553
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.30 E-value=1.5e+02 Score=21.66 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 167 (485)
.+.+-.|.++++.+.+.+...+..|....|..+..
T Consensus 39 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 73 (150)
T 2xig_A 39 SGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK 73 (150)
T ss_dssp CSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 33344444444444443333334444444444443
No 326
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.28 E-value=1.5e+02 Score=21.54 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 167 (485)
.-.|.++++.+.+.+...+..|....|..+..
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 33444444444443333333333333333333
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.27 E-value=1.1e+02 Score=22.02 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=26.7
Q ss_pred CCCCCCHHhHHHHHHHHHhcC-CcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 44 NGFRHDNSTFSLMISKLVSAN-QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
.|.+.++.- ..++..+...+ ..-.|.++++.+.+.++..+..+...-+..+...|
T Consensus 12 ~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 12 AGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp TTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344444332 22334444444 55566666666666555555555444444444444
No 328
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.02 E-value=94 Score=20.55 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 011463 411 SSLITCFCKKGDIHKSARIVDEL 433 (485)
Q Consensus 411 ~~l~~~~~~~g~~~~a~~~~~~~ 433 (485)
.-....+.+.|++++|++..++.
T Consensus 19 ~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHH
Confidence 34455566666666666665554
No 329
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.79 E-value=2.1e+02 Score=22.59 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=27.8
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHhHCCC
Q 011463 273 KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK-----LQEAVEILDRMKLQGL 327 (485)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 327 (485)
+..+.+.|+-++-+|++.|..|....-..++.+....|. ...|...++.....|.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 345666666666666666655444444444444433332 2334444444444453
No 330
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.47 E-value=1.6e+02 Score=21.34 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=6.7
Q ss_pred CChhhHHHHHHHHHhc
Q 011463 99 HRPLDAMRVFDKMKEF 114 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~ 114 (485)
+..-.|.++++.+.+.
T Consensus 35 ~~~~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 35 MAHPTADDIYKALEGK 50 (145)
T ss_dssp SSCCCHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHh
Confidence 3334444444444433
No 331
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.25 E-value=1.9e+02 Score=21.94 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=5.6
Q ss_pred CChHHHHHHHH
Q 011463 170 GTMDAAFKIFR 180 (485)
Q Consensus 170 ~~~~~a~~~~~ 180 (485)
|+.+....++.
T Consensus 16 g~~~~v~~ll~ 26 (201)
T 3hra_A 16 RDTKKVKEILQ 26 (201)
T ss_dssp TCHHHHHHHHT
T ss_pred ccHHHHHHHHH
Confidence 55555555443
No 332
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=28.81 E-value=47 Score=27.18 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 420 KGDIHKSARIVDELVLD-GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 420 ~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
..++.....++..|+.. .-.|+.....+++++|.+..+...|.+.+...+-..
T Consensus 186 ~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~ 239 (268)
T 2fv2_A 186 YERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQ 239 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHH
Confidence 33444444444444432 123444555555555555555555555555444333
No 333
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=28.58 E-value=1e+02 Score=18.83 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=18.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 88 FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 88 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
++.++..+++..-.++++-.+++..+.| ..+...|..-.+.+
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~L 46 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3344444444444444555555554444 33444444333333
No 334
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.83 E-value=3.3e+02 Score=25.07 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=45.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 166 (485)
.+..|++...-...++.|...|.+..... |.+...|+.+.-.....|+.-.|.-.|-+..... .|-......+...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Confidence 34445555555566677777777776653 4455667777666666666666655555544432 355555555555544
Q ss_pred h
Q 011463 167 K 167 (485)
Q Consensus 167 ~ 167 (485)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 335
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=27.75 E-value=2.5e+02 Score=23.02 Aligned_cols=48 Identities=6% Similarity=-0.143 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhC---CCCCChhhHHHHHHH-----HHhcCcHHHHHHHHHHHHHc
Q 011463 424 HKSARIVDELVLD---GCLPDEGTWSAVMTA-----LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 424 ~~a~~~~~~~~~~---~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~ 471 (485)
+.+.+.|+.+.+. .++|+..+...|+-. |--.+++++|..+.+++...
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566666665532 367877666554432 22568999998888877654
No 336
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=27.54 E-value=1.4e+02 Score=20.74 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHh-CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 388 PNRAFQVYLSMRN-RSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 388 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
++.++++.+...+ .|. .+.++...++...+.|-.++. +.|..|..
T Consensus 35 ~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~~m~~ 80 (119)
T 1wty_A 35 FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWLEMLE 80 (119)
T ss_dssp HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHHHHHH
Confidence 4444555444443 233 345555666666666655444 44555543
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.46 E-value=1.8e+02 Score=21.26 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011463 138 LAFRFYRHMREIGIQPCVASLNVLIKALC 166 (485)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 166 (485)
.|.++++.+.+.+...+..|....|..+.
T Consensus 35 sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 63 (150)
T 2w57_A 35 SAEELYKKLIDLGEEIGLATVYRVLNQFD 63 (150)
T ss_dssp EHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 34444444443332333333333333333
No 338
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.43 E-value=1.7e+02 Score=20.91 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=10.9
Q ss_pred HHHHHhccC-ChhhHHHHHHHHHhcC
Q 011463 91 ICRGYGRVH-RPLDAMRVFDKMKEFG 115 (485)
Q Consensus 91 l~~~~~~~~-~~~~a~~~~~~~~~~~ 115 (485)
++..+...+ ..-.|.++++.+.+.+
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAG 48 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhC
Confidence 333333333 4445555555554443
No 339
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.38 E-value=1.7e+02 Score=20.82 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=13.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 011463 230 TSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 230 ~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445555555566666655555553
No 340
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.36 E-value=3.5e+02 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=17.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306 (485)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (485)
.++.+.|+.++.+|++.|..|....-..+..+.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455666666666666665554433333333333
No 341
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.68 E-value=2.7e+02 Score=22.91 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=5.9
Q ss_pred HhcCCcchHHHHH
Q 011463 61 VSANQFRPAEDLL 73 (485)
Q Consensus 61 ~~~g~~~~a~~~~ 73 (485)
+..|+.+-+..++
T Consensus 39 ~~~g~~~~v~~Ll 51 (285)
T 3kea_A 39 IADNNVRLVCTLL 51 (285)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3455554444333
No 342
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.38 E-value=3.6e+02 Score=24.32 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=11.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 011463 344 IGKYQEAANFLDEMVLGGITP 364 (485)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~ 364 (485)
.++.+.|+.++.+|.+.|..|
T Consensus 268 gsd~daAl~~la~ml~~Gedp 288 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDP 288 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 345555555555555555443
No 343
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.06 E-value=1.4e+02 Score=20.94 Aligned_cols=42 Identities=12% Similarity=-0.025 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 107 VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
+|+.+....+.|+...-..-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444434433333333333334455666666666655554
No 344
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.72 E-value=2.2e+02 Score=21.65 Aligned_cols=81 Identities=11% Similarity=-0.011 Sum_probs=36.5
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 127 (485)
++...-...+..+...|..+....+. .+.. .++..+-...+.++...|..+. ...+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 44554455555555555433333333 3332 2344455555555555554432 233333332 24555555555
Q ss_pred HHHHHcCCH
Q 011463 128 AILVEENQL 136 (485)
Q Consensus 128 ~~~~~~~~~ 136 (485)
.++...++.
T Consensus 98 ~aL~~~~~~ 106 (201)
T 3ltj_A 98 VALGQIGDE 106 (201)
T ss_dssp HHHHHHCCG
T ss_pred HHHHHhCcH
Confidence 555555543
No 345
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=25.08 E-value=2.7e+02 Score=22.42 Aligned_cols=48 Identities=8% Similarity=-0.141 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhC---CCCCChhhHHHHHHH-----HHhcCcHHHHHHHHHHHHHc
Q 011463 424 HKSARIVDELVLD---GCLPDEGTWSAVMTA-----LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 424 ~~a~~~~~~~~~~---~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~ 471 (485)
+.|.+.|+.+.+. .++|+..+...++-. |--.|++++|.++.++++..
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555544422 356766655444332 22468888888777776654
No 346
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.90 E-value=2.4e+02 Score=21.70 Aligned_cols=142 Identities=11% Similarity=-0.057 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 83 ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
++...-...+..+.+.|..+ +...+..+.. .++...-...+.++...++.+. ...+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 45666666666666666643 3333333333 2466666666666666665433 333333332 25555555566
Q ss_pred HHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 011463 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241 (485)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 241 (485)
..+... ++.+ +...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.+.
T Consensus 103 ~aL~~~-~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQI-GDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHH-CCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHh-CcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 666655 5543 3333333333 245555556666666666543 3333333332 2344444455555555554
No 347
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.90 E-value=1.2e+02 Score=22.23 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=22.0
Q ss_pred HHHHHhcC-CcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 57 ISKLVSAN-QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 57 ~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
+..+...+ ..-.|.++++.+.+.++..+..+....+..+...|
T Consensus 23 l~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 23 LEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33333343 45556666666655555555555444455554444
No 348
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.24 E-value=2.5e+02 Score=22.70 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=29.5
Q ss_pred HHHHhcCCcchHHHHHHHHhhcCCCC-------CHHHHHHHHHHHh--ccCChhhHHHHHHHH
Q 011463 58 SKLVSANQFRPAEDLLDRVNKEKCDI-------TEDIFLSICRGYG--RVHRPLDAMRVFDKM 111 (485)
Q Consensus 58 ~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 111 (485)
...++.|+.+....+++.....+... +..-++.|..+.. +.|+.+-+..+++.-
T Consensus 18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 33457788888888888766554332 1222333333332 346666665555553
No 349
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.23 E-value=1.9e+02 Score=20.48 Aligned_cols=100 Identities=6% Similarity=0.067 Sum_probs=57.7
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD--IHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (485)
.++.-|... +.++|.+.++++...... ...+...+..++-+.++ .+....++..+...|+-+.......+...+..
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~ 90 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNE 90 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhh
Confidence 556666666 899999999887532222 23344445555555442 46678888888877765554443333333333
Q ss_pred cCc--------HHHHHHHHHHHHHcCCCccch
Q 011463 455 RRK--------MRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 455 ~g~--------~~~A~~~~~~~~~~~~~~~~~ 478 (485)
..+ ++--.+++.+++..|+.+.+.
T Consensus 91 l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~ 122 (129)
T 2nsz_A 91 IPDINLDVPHSYSVLERFVEECFQAGIISKQL 122 (129)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHH
T ss_pred ChHhhcCccchHHHHHHHHHHHHHCCCCCHHH
Confidence 222 233445666777777666543
No 350
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.98 E-value=1.8e+02 Score=20.90 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=11.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcC
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
++..+...+..-.|.++++.+.+.+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~ 43 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKG 43 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 3333334344444555555554443
No 351
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.93 E-value=2.2e+02 Score=20.99 Aligned_cols=99 Identities=6% Similarity=0.062 Sum_probs=55.4
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD--IHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (485)
.++.-|... +.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-+.......+...+..
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ 92 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNE 92 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHh
Confidence 566666666 899999999887532222 23344444555555333 45677888888877655544443333333332
Q ss_pred cCc--------HHHHHHHHHHHHHcCCCccc
Q 011463 455 RRK--------MRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 455 ~g~--------~~~A~~~~~~~~~~~~~~~~ 477 (485)
..+ ++-..+++.+++..|..+.+
T Consensus 93 ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~ 123 (152)
T 2ion_A 93 IPDINLDVPHSYSVLERFVEECFQAGIISKQ 123 (152)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTTCSCHH
T ss_pred ChHhccCccchHHHHHHHHHHHHHCCCCCHH
Confidence 222 22344556666666666543
No 352
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.93 E-value=2.1e+02 Score=20.76 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=28.9
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 44 NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
.|.++++.- ..++..+...+ .-.|.++++.+.+.++..+..+....+..+...|
T Consensus 13 ~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 13 RGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp TTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 455544432 22334444444 5667777777766665555555555555555544
No 353
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.61 E-value=1.4e+02 Score=21.13 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=9.3
Q ss_pred HHHHHcCCHhHHHHHHHHHHHC
Q 011463 199 NGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
..+...+..-.|.++++.+.+.
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~ 39 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRR 39 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHT
T ss_pred HHHHhCCCCCCHHHHHHHHHHh
Confidence 3333333344444444444443
No 354
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.12 E-value=2.2e+02 Score=24.47 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 011463 299 YSTLLNGLCKEGKLQEAVEILDRMK 323 (485)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (485)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888899999888887764
No 355
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.74 E-value=2.1e+02 Score=25.93 Aligned_cols=63 Identities=6% Similarity=-0.001 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------hhhHHH-HHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPD--------EGTWSA-VMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--------~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
..+.+...|.+.|+.+-+..+++.+...+..|+ ..+|.- ++..+...+++.+|.+.+..+.++
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 456677788888888888888877766544222 234443 344556778888888888887776
No 356
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.32 E-value=3.7e+02 Score=22.96 Aligned_cols=55 Identities=7% Similarity=-0.052 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
.++...+..+.+.+++..|..+.+++++.+ |+ ....++|.+++..+-++.-...+
T Consensus 208 LaLr~AM~~a~K~KNy~tAa~fArrLLel~--p~-------------~~~a~qArkil~~ce~~~~Da~e 262 (325)
T 3mv2_A 208 NALQVAMSQHFKHKNFLQASYFAGEFLKII--SS-------------GPRAEQARKIKNKADSMASDAIP 262 (325)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CS-------------SHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CC-------------HHHHHHHHHHHHHHhcCCCCccc
Confidence 345566777889999999999999999874 32 12345677777777665443333
No 357
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=21.61 E-value=1.6e+02 Score=18.55 Aligned_cols=23 Identities=9% Similarity=0.058 Sum_probs=10.2
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcC
Q 011463 450 TALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
..+...|+.++|...|-+++.-.
T Consensus 25 E~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 25 EELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHc
Confidence 33444444444444444444433
No 358
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.26 E-value=3.1e+02 Score=21.78 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=14.8
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCC
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDI 83 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~ 83 (485)
..+..|+.+....+++.+...+..+
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3456677776666666665555443
No 359
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.75 E-value=1.1e+02 Score=23.84 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
..+..|.+.|.+++|.+++++....
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHccchHHHHHHHHHHhcC
Confidence 3456789999999999999997654
No 360
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=20.51 E-value=1.4e+02 Score=23.10 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHH
Q 011463 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467 (485)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 467 (485)
.....++.+.+.... .+-.-.-.+|.++.+.|++++|.++..++... +..... ..+.+++.-|.-++-+
T Consensus 15 l~~~~~~~~~LR~qr--Hdf~NkLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~K 83 (192)
T 1ixm_A 15 TALTNELIHLLGHSR--HDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLTF 83 (192)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHHH
Confidence 334444555544331 13333346788889999999999998888753 112222 5566777666655544
Q ss_pred H
Q 011463 468 E 468 (485)
Q Consensus 468 ~ 468 (485)
.
T Consensus 84 ~ 84 (192)
T 1ixm_A 84 N 84 (192)
T ss_dssp G
T ss_pred H
Confidence 3
No 361
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.50 E-value=1.5e+02 Score=17.67 Aligned_cols=18 Identities=17% Similarity=-0.053 Sum_probs=9.9
Q ss_pred cCChhhHHHHHHHHHhcC
Q 011463 98 VHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~ 115 (485)
.|+.+.|+..+-.|...+
T Consensus 36 ~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp TTCHHHHHHHHHHSSCCC
T ss_pred CCCHHHHHHHHHcCcCCC
Confidence 456666666665554433
No 362
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.35 E-value=2.8e+02 Score=20.94 Aligned_cols=126 Identities=6% Similarity=-0.137 Sum_probs=59.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhc-C-ChhHHHHHHHHHHhCCCccchhh---HHHHH
Q 011463 340 CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK-T-DPNRAFQVYLSMRNRSISVDSLT---YSSLI 414 (485)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~---~~~l~ 414 (485)
..+..|+.+.-.++.+-+++.|..++...-.-.. .+..++.. . +.....++.+.+.+.|..++... .+..+
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~T----pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpL 119 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIKSRTKEGTT----LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCC----THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTT
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCc----HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHH
Confidence 3445566655556666667777666543322111 22222222 2 44455666666776666554322 10122
Q ss_pred HHHHhcCCH-HHHHHHHHHHHh-CCCCCChhhHH--HHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 415 TCFCKKGDI-HKSARIVDELVL-DGCLPDEGTWS--AVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 415 ~~~~~~g~~-~~a~~~~~~~~~-~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
...+..|.. ..-..+++.+.+ .|..++..... +-+....+.|.. +++++++...+
T Consensus 120 h~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~-~~v~~L~~~~~ 178 (186)
T 3t8k_A 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP-IALKMMEDYIK 178 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCH-HHHHHHHHHHH
T ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCH-HHHHHHHHHHH
Confidence 222223322 345567777777 67665443211 122333455555 45555555444
Done!